Query 002876
Match_columns 872
No_of_seqs 275 out of 2540
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 05:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpt_A Importin beta-1 subunit 100.0 5.1E-71 1.8E-75 659.1 94.6 843 3-871 4-860 (861)
2 1qgr_A Protein (importin beta 100.0 1.5E-68 5.2E-73 639.0 87.6 848 3-869 1-872 (876)
3 4fdd_A Transportin-1; heat rep 100.0 2.8E-63 9.5E-68 586.5 73.7 741 3-833 13-793 (852)
4 1wa5_C Importin alpha RE-expor 100.0 1.3E-45 4.6E-50 438.9 66.1 680 4-746 6-773 (960)
5 2x19_B Importin-13; nuclear tr 100.0 8.1E-42 2.8E-46 410.0 67.0 758 4-828 25-898 (963)
6 2x1g_F Cadmus; transport prote 100.0 2.2E-43 7.4E-48 422.8 46.5 763 4-835 8-917 (971)
7 1ibr_B P95, importin beta-1 su 100.0 5.5E-43 1.9E-47 385.5 45.2 456 3-468 1-461 (462)
8 3m1i_C Exportin-1; heat repeat 100.0 9.1E-41 3.1E-45 400.6 60.1 753 4-824 17-929 (1049)
9 4fdd_A Transportin-1; heat rep 100.0 2.9E-40 1E-44 390.0 60.1 724 6-827 51-827 (852)
10 4hat_C Exportin-1; heat repeat 100.0 1.5E-37 5.1E-42 361.4 64.6 737 4-827 17-881 (1023)
11 3ibv_A Exportin-T; karyopherin 100.0 6.9E-38 2.3E-42 364.7 60.6 733 4-836 7-887 (980)
12 1u6g_C TIP120 protein, CAND1; 100.0 5.2E-39 1.8E-43 394.8 50.5 661 3-746 6-745 (1230)
13 1qgr_A Protein (importin beta 100.0 1.7E-37 5.7E-42 370.7 55.5 709 51-871 13-830 (876)
14 2bpt_A Importin beta-1 subunit 100.0 7.6E-36 2.6E-40 355.7 66.4 719 15-827 53-860 (861)
15 3gjx_A Exportin-1; transport, 100.0 2.1E-34 7.1E-39 332.0 58.1 748 4-827 29-907 (1073)
16 1u6g_C TIP120 protein, CAND1; 100.0 4.5E-33 1.5E-37 342.1 58.7 695 38-824 7-764 (1230)
17 1b3u_A Protein (protein phosph 100.0 1E-32 3.5E-37 313.6 41.7 572 94-774 12-585 (588)
18 1b3u_A Protein (protein phosph 100.0 7.1E-31 2.4E-35 298.5 41.2 571 39-720 12-585 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 4.2E-28 1.4E-32 290.9 53.2 508 2-559 10-682 (1204)
20 2x1g_F Cadmus; transport prote 99.9 6.1E-22 2.1E-26 237.1 43.4 652 140-847 16-743 (971)
21 1wa5_C Importin alpha RE-expor 99.9 3.4E-18 1.2E-22 203.4 61.8 644 96-829 39-796 (960)
22 2x19_B Importin-13; nuclear tr 99.9 6.9E-19 2.3E-23 211.1 48.9 646 140-849 34-737 (963)
23 1ibr_B P95, importin beta-1 su 99.8 1.8E-18 6E-23 189.8 32.2 417 228-701 10-461 (462)
24 3now_A UNC-45 protein, SD10334 99.8 1.3E-15 4.6E-20 169.6 44.6 685 5-776 8-782 (810)
25 2vgl_B AP-2 complex subunit be 99.8 1.4E-16 4.8E-21 178.0 35.1 511 3-635 13-530 (591)
26 3now_A UNC-45 protein, SD10334 99.8 7.7E-15 2.6E-19 163.5 46.4 650 143-868 20-737 (810)
27 2vgl_B AP-2 complex subunit be 99.8 4E-15 1.4E-19 166.2 40.9 440 4-542 50-499 (591)
28 3m1i_C Exportin-1; heat repeat 99.8 1.9E-13 6.4E-18 164.1 56.7 677 16-746 113-911 (1049)
29 4hat_C Exportin-1; heat repeat 99.7 7.1E-13 2.4E-17 154.7 57.7 673 17-746 114-911 (1023)
30 2z6g_A B-catenin; FULL-length, 99.7 4.4E-15 1.5E-19 170.9 33.1 525 95-682 118-666 (780)
31 2jdq_A Importin alpha-1 subuni 99.7 2E-15 6.9E-20 164.6 26.4 399 94-535 22-442 (450)
32 2jdq_A Importin alpha-1 subuni 99.7 1.8E-15 6.1E-20 165.1 25.3 365 127-539 13-393 (450)
33 4b8j_A Importin subunit alpha- 99.7 4E-16 1.4E-20 173.4 19.6 404 369-825 76-497 (528)
34 3ibv_A Exportin-T; karyopherin 99.7 2.8E-12 9.6E-17 149.8 50.9 674 4-743 89-896 (980)
35 1wa5_B Importin alpha subunit; 99.7 8E-16 2.7E-20 170.8 18.6 405 366-825 86-511 (530)
36 1wa5_B Importin alpha subunit; 99.7 6E-15 2.1E-19 163.7 24.3 401 94-537 89-511 (530)
37 1w63_A Adapter-related protein 99.7 3.2E-13 1.1E-17 151.3 37.2 446 5-536 72-577 (618)
38 2z6g_A B-catenin; FULL-length, 99.6 1E-13 3.5E-18 159.6 32.5 511 129-729 113-670 (780)
39 1w63_A Adapter-related protein 99.6 1.6E-12 5.5E-17 145.6 39.4 468 51-636 82-576 (618)
40 2z6h_A Catenin beta-1, beta-ca 99.6 1.7E-13 5.9E-18 155.5 31.7 504 130-726 13-531 (644)
41 4b8j_A Importin subunit alpha- 99.6 3.2E-13 1.1E-17 149.9 29.5 401 176-679 76-496 (528)
42 3gjx_A Exportin-1; transport, 99.6 2.1E-09 7.2E-14 124.8 61.2 681 16-746 125-935 (1073)
43 2vgl_A Adaptor protein complex 99.6 4.2E-11 1.4E-15 133.3 45.0 488 95-677 77-587 (621)
44 1jdh_A Beta-catenin; beta-cate 99.6 1.5E-12 5E-17 145.2 33.6 471 6-534 20-528 (529)
45 2z6h_A Catenin beta-1, beta-ca 99.6 2.4E-12 8.2E-17 146.1 34.7 467 6-539 17-530 (644)
46 1jdh_A Beta-catenin; beta-cate 99.5 9.8E-12 3.3E-16 138.5 34.7 487 130-677 16-528 (529)
47 2qk1_A Protein STU2; STU2P, XM 99.5 5.6E-13 1.9E-17 129.4 19.9 207 371-650 20-234 (249)
48 2vgl_A Adaptor protein complex 99.5 6.7E-11 2.3E-15 131.7 37.3 477 41-635 78-587 (621)
49 3ul1_B Importin subunit alpha- 99.5 1.3E-12 4.4E-17 143.2 19.4 403 369-822 59-476 (510)
50 3tpo_A Importin subunit alpha- 99.5 2.8E-12 9.5E-17 141.6 22.1 406 367-822 76-495 (529)
51 2qk2_A LP04448P; mini spindles 99.5 1.8E-12 6.1E-17 126.9 17.9 206 363-650 11-219 (242)
52 3ul1_B Importin subunit alpha- 99.4 6.9E-11 2.3E-15 129.5 31.5 385 4-439 58-478 (510)
53 3tpo_A Importin subunit alpha- 99.4 1.5E-10 5.2E-15 127.6 31.0 391 4-439 77-497 (529)
54 2qk2_A LP04448P; mini spindles 99.4 4E-12 1.4E-16 124.4 16.3 200 611-836 18-218 (242)
55 2qk1_A Protein STU2; STU2P, XM 99.4 2.4E-11 8.2E-16 117.9 21.0 203 414-692 21-234 (249)
56 1oyz_A Hypothetical protein YI 99.3 6.5E-10 2.2E-14 111.7 24.4 252 176-531 25-277 (280)
57 3a6p_A Exportin-5; exportin-5, 99.2 1.8E-07 6E-12 112.8 43.6 596 144-827 26-700 (1204)
58 3opb_A SWI5-dependent HO expre 99.2 6.4E-07 2.2E-11 98.1 41.1 581 131-805 132-759 (778)
59 3opb_A SWI5-dependent HO expre 99.1 5.5E-07 1.9E-11 98.6 39.1 543 93-708 133-764 (778)
60 1oyz_A Hypothetical protein YI 99.1 1.2E-08 4.2E-13 102.3 23.2 224 5-288 25-249 (280)
61 4ady_A RPN2, 26S proteasome re 99.1 2.4E-06 8.1E-11 95.8 41.5 295 368-746 393-700 (963)
62 4hxt_A De novo protein OR329; 99.0 1.9E-08 6.5E-13 99.3 20.1 233 4-253 3-246 (252)
63 1xm9_A Plakophilin 1; armadill 99.0 1.2E-08 4E-13 109.8 19.1 346 369-746 4-431 (457)
64 1xm9_A Plakophilin 1; armadill 99.0 1.9E-07 6.4E-12 100.4 27.9 352 133-535 4-448 (457)
65 4db8_A Armadillo-repeat protei 98.9 8E-09 2.7E-13 101.9 13.8 228 221-485 14-250 (252)
66 2iw3_A Elongation factor 3A; a 98.9 7.7E-07 2.6E-11 101.1 31.3 307 367-722 54-375 (986)
67 2iw3_A Elongation factor 3A; a 98.9 3.5E-06 1.2E-10 95.8 36.3 302 97-488 19-326 (986)
68 4hxt_A De novo protein OR329; 98.9 4.9E-08 1.7E-12 96.3 18.7 235 38-289 3-241 (252)
69 3l6x_A Catenin delta-1; cateni 98.9 1.1E-07 3.7E-12 102.7 22.2 374 366-776 47-476 (584)
70 3ltm_A Alpha-REP4; protein eng 98.9 1.1E-07 3.8E-12 90.6 19.9 186 5-251 21-206 (211)
71 3l6x_A Catenin delta-1; cateni 98.9 7.3E-07 2.5E-11 96.2 27.9 366 127-537 43-477 (584)
72 3ltj_A Alpharep-4; protein eng 98.9 1.9E-07 6.7E-12 88.0 20.4 181 5-246 16-196 (201)
73 4db8_A Armadillo-repeat protei 98.9 9.3E-09 3.2E-13 101.5 11.5 236 36-288 11-250 (252)
74 3ltj_A Alpharep-4; protein eng 98.9 8.5E-08 2.9E-12 90.5 17.5 188 172-440 12-199 (201)
75 3ltm_A Alpha-REP4; protein eng 98.9 5E-08 1.7E-12 93.0 15.9 188 174-442 19-206 (211)
76 3nmz_A APC variant protein; pr 98.8 7.1E-08 2.4E-12 101.6 16.2 326 363-727 70-455 (458)
77 2db0_A 253AA long hypothetical 98.7 5.5E-06 1.9E-10 70.8 22.5 215 218-486 31-246 (253)
78 4db6_A Armadillo repeat protei 98.7 1.9E-07 6.5E-12 88.9 14.6 193 92-288 12-208 (210)
79 3nmz_A APC variant protein; pr 98.7 2.2E-06 7.5E-11 90.3 22.1 220 232-487 213-451 (458)
80 4ady_A RPN2, 26S proteasome re 98.6 1.1E-05 3.9E-10 90.4 27.9 315 130-532 391-715 (963)
81 1vsy_5 Proteasome activator BL 98.6 0.00012 4.1E-09 84.7 37.3 741 5-831 135-973 (997)
82 4db6_A Armadillo repeat protei 98.6 4.1E-07 1.4E-11 86.6 14.2 197 35-248 10-209 (210)
83 1xqr_A HSPBP1 protein; armadil 98.5 2.3E-06 7.9E-11 84.7 17.1 245 24-286 13-284 (296)
84 2of3_A ZYG-9; multifunctional 98.5 5.4E-06 1.9E-10 78.9 17.1 182 228-442 55-239 (266)
85 2db0_A 253AA long hypothetical 98.5 4.4E-05 1.5E-09 65.4 20.3 200 130-380 31-230 (253)
86 4ffb_C Protein STU2; tubulin f 98.5 1E-06 3.4E-11 87.7 12.3 199 372-643 14-218 (278)
87 1xqr_A HSPBP1 protein; armadil 98.5 2.7E-06 9.2E-11 84.2 15.1 200 609-823 82-286 (296)
88 3b2a_A TON_1937, putative unch 98.4 0.00023 7.8E-09 64.3 24.0 149 129-289 31-179 (265)
89 3tjz_B Coatomer subunit gamma; 98.4 7.6E-06 2.6E-10 82.1 16.4 313 90-477 24-344 (355)
90 3b2a_A TON_1937, putative unch 98.4 5E-05 1.7E-09 68.5 19.3 217 218-479 32-254 (265)
91 3nmw_A APC variant protein; AR 98.3 2.9E-06 1E-10 86.5 11.6 229 470-727 97-339 (354)
92 4ffb_C Protein STU2; tubulin f 98.3 1.6E-05 5.5E-10 78.9 16.5 182 341-541 21-217 (278)
93 3nmw_A APC variant protein; AR 98.1 4.7E-05 1.6E-09 77.6 16.5 255 18-289 47-334 (354)
94 2of3_A ZYG-9; multifunctional 98.1 0.00026 8.9E-09 67.4 20.0 178 9-208 52-239 (266)
95 3tjz_B Coatomer subunit gamma; 98.1 5.6E-05 1.9E-09 75.9 14.5 288 84-433 60-347 (355)
96 3oc3_A Helicase MOT1, MOT1; re 98.0 0.00012 4.2E-09 74.8 15.5 224 35-288 172-403 (800)
97 1te4_A Conserved protein MTH18 98.0 4.2E-06 1.4E-10 72.1 4.2 121 364-533 9-130 (131)
98 3grl_A General vesicular trans 98.0 0.003 1E-07 67.6 26.5 324 128-487 18-395 (651)
99 3oc3_A Helicase MOT1, MOT1; re 98.0 0.00049 1.7E-08 70.6 19.3 252 127-435 169-432 (800)
100 1vsy_5 Proteasome activator BL 98.0 0.00044 1.5E-08 80.1 21.5 410 90-540 506-970 (997)
101 4gmo_A Putative uncharacterize 97.8 0.00099 3.4E-08 75.2 20.3 71 367-441 35-107 (684)
102 1te4_A Conserved protein MTH18 97.6 0.00016 5.6E-09 61.9 7.9 104 343-483 26-130 (131)
103 4gmo_A Putative uncharacterize 97.6 0.055 1.9E-06 61.0 30.6 155 132-291 36-216 (684)
104 3l9t_A Putative uncharacterize 97.0 0.026 8.8E-07 51.8 15.2 148 90-258 69-217 (240)
105 3u0r_A Apoptosis inhibitor 5; 97.0 0.43 1.5E-05 48.8 26.2 47 94-144 67-113 (507)
106 1lrv_A LRV, leucine-rich repea 96.8 0.00021 7.3E-09 67.7 0.0 186 99-435 57-242 (244)
107 3l9t_A Putative uncharacterize 96.8 0.02 6.8E-07 52.5 12.8 141 258-442 69-210 (240)
108 3grl_A General vesicular trans 96.7 0.95 3.2E-05 48.7 30.0 337 35-441 19-396 (651)
109 3tt9_A Plakophilin-2; cell adh 96.6 0.012 4.2E-07 55.2 10.6 179 367-561 8-207 (233)
110 3fga_B Serine/threonine-protei 96.3 0.27 9.2E-06 49.6 18.7 231 410-679 130-366 (403)
111 1w9c_A CRM1 protein, exportin 96.2 0.64 2.2E-05 45.3 20.4 165 577-746 45-227 (321)
112 2npp_B PP2A, B subunit, serine 96.2 0.32 1.1E-05 50.1 19.2 261 379-678 129-398 (449)
113 1vsy_4 Proteasome activator BL 96.2 2.3 7.8E-05 48.1 38.5 335 453-826 334-689 (799)
114 3tt9_A Plakophilin-2; cell adh 96.2 0.026 8.9E-07 53.0 10.4 177 344-535 25-228 (233)
115 3gs3_A Symplekin, LD45768P; he 95.9 1.2 4.2E-05 42.1 21.6 186 2-205 14-243 (257)
116 1w9c_A CRM1 protein, exportin 95.9 0.79 2.7E-05 44.7 19.1 167 522-704 44-228 (321)
117 3gs3_A Symplekin, LD45768P; he 95.6 1.3 4.4E-05 42.0 19.2 164 86-254 47-249 (257)
118 3u0r_A Apoptosis inhibitor 5; 95.5 2.6 8.8E-05 43.3 33.7 276 176-517 31-325 (507)
119 4atg_A TAF6; transcription, TF 94.8 0.29 1E-05 43.8 11.4 78 627-704 65-144 (196)
120 3o2t_A Symplekin; heat repeat, 94.7 4.1 0.00014 41.1 23.8 201 3-227 25-272 (386)
121 4atg_A TAF6; transcription, TF 94.4 2.7 9.3E-05 37.6 17.8 87 521-623 60-146 (196)
122 1lrv_A LRV, leucine-rich repea 94.2 0.0073 2.5E-07 57.2 -0.3 202 23-391 40-241 (244)
123 1vsy_4 Proteasome activator BL 93.9 10 0.00036 42.7 47.2 361 84-488 16-457 (799)
124 3o2t_A Symplekin; heat repeat, 92.5 10 0.00034 38.3 24.4 116 125-249 58-184 (386)
125 1lsh_A Lipovitellin (LV-1N, LV 92.2 13 0.00043 44.1 22.8 169 663-863 408-590 (1056)
126 2jak_A Serine/threonine-protei 92.0 1.7 5.7E-05 43.8 12.6 186 409-633 174-363 (392)
127 1lsh_A Lipovitellin (LV-1N, LV 91.8 16 0.00055 43.2 23.0 165 96-289 395-576 (1056)
128 1upk_A MO25 protein; transfera 89.6 16 0.00055 35.6 22.5 185 96-289 82-283 (341)
129 1upk_A MO25 protein; transfera 89.4 17 0.00058 35.5 16.7 188 50-249 89-284 (341)
130 3dad_A FH1/FH2 domain-containi 88.4 15 0.00051 35.9 15.4 108 136-251 123-234 (339)
131 2npp_B PP2A, B subunit, serine 86.4 32 0.0011 35.4 24.7 228 93-359 163-400 (449)
132 1ho8_A Vacuolar ATP synthase s 82.3 50 0.0017 34.2 16.9 61 188-249 417-477 (480)
133 3fga_B Serine/threonine-protei 82.1 46 0.0016 33.7 23.7 96 239-361 271-369 (403)
134 1x5b_A Signal transducing adap 81.6 9.8 0.00033 33.0 9.7 76 608-683 52-129 (163)
135 3g2s_A C-terminal fragment of 80.6 25 0.00084 29.9 11.6 77 607-683 47-130 (149)
136 2fv2_A RCD1 required for cell 77.6 46 0.0016 31.0 15.3 58 145-204 116-173 (268)
137 1juq_A ADP-ribosylation factor 77.5 16 0.00056 31.9 9.9 76 608-683 50-132 (171)
138 1mhq_A ADP-ribosylation factor 75.7 21 0.00072 30.3 9.8 76 608-683 38-120 (148)
139 3zyq_A Hepatocyte growth facto 72.5 19 0.00065 33.3 9.5 77 607-683 44-122 (226)
140 3ldz_A STAM-1, signal transduc 72.3 42 0.0014 28.1 12.5 76 607-683 41-118 (140)
141 3g2s_A C-terminal fragment of 70.8 47 0.0016 28.2 10.7 77 174-252 48-130 (149)
142 1dvp_A HRS, hepatocyte growth 70.2 24 0.00082 32.5 9.7 77 607-683 41-119 (220)
143 3ldz_A STAM-1, signal transduc 67.0 23 0.00078 29.7 8.0 76 174-251 42-117 (140)
144 3s4w_B Protein FACD2, fanconi 65.4 1.9E+02 0.0064 34.6 17.6 176 52-247 358-548 (1323)
145 1vdy_A Hypothetical protein (R 65.1 18 0.0006 30.2 6.7 79 361-440 43-131 (140)
146 1juq_A ADP-ribosylation factor 63.1 41 0.0014 29.4 9.1 77 174-252 50-132 (171)
147 1mhq_A ADP-ribosylation factor 60.6 55 0.0019 27.7 9.2 74 176-251 40-119 (148)
148 1sz9_A PCF11 protein; RNA poly 60.1 77 0.0026 26.6 10.1 88 115-207 29-116 (144)
149 1x5b_A Signal transducing adap 58.3 29 0.00099 30.0 7.3 76 174-251 52-128 (163)
150 2jak_A Serine/threonine-protei 57.3 1.6E+02 0.0056 29.6 17.8 185 93-286 175-364 (392)
151 1t06_A Hypothetical protein; s 57.1 44 0.0015 31.1 8.9 73 366-442 107-183 (235)
152 2b6c_A Hypothetical protein EF 54.0 36 0.0012 31.3 7.7 89 341-442 102-191 (220)
153 3dad_A FH1/FH2 domain-containi 52.3 1.8E+02 0.0061 28.5 15.3 145 4-162 119-288 (339)
154 1elk_A Target of MYB1; superhe 51.7 1E+02 0.0034 26.4 9.6 75 608-682 53-133 (157)
155 3qml_C Protein SLS1, nucleotid 51.2 97 0.0033 29.8 10.0 67 17-86 42-116 (315)
156 1sz9_A PCF11 protein; RNA poly 49.0 1.2E+02 0.0041 25.5 10.8 98 604-702 39-137 (144)
157 3rru_A TOM1L1 protein; structu 48.6 22 0.00077 30.2 4.9 79 648-726 52-134 (152)
158 3jxy_A Alkylpurine DNA glycosy 47.8 1.7E+02 0.0058 27.0 14.6 122 51-205 73-195 (232)
159 1vdy_A Hypothetical protein (R 44.0 48 0.0016 27.6 6.0 98 673-776 31-130 (140)
160 4f52_E Glomulin; cullin-ring E 42.0 2.9E+02 0.01 29.8 13.5 107 133-247 319-430 (596)
161 3ebb_A Phospholipase A2-activa 38.2 2.2E+02 0.0077 27.5 10.8 117 409-537 147-264 (304)
162 1ho8_A Vacuolar ATP synthase s 37.6 3.7E+02 0.013 27.9 20.7 70 608-679 395-476 (480)
163 3zyq_A Hepatocyte growth facto 36.9 1.2E+02 0.0041 27.8 8.3 75 792-868 44-118 (226)
164 3jxy_A Alkylpurine DNA glycosy 35.7 2.6E+02 0.009 25.6 13.4 137 99-259 68-206 (232)
165 1elk_A Target of MYB1; superhe 34.7 1.5E+02 0.005 25.3 7.9 76 792-868 52-130 (157)
166 2fv2_A RCD1 required for cell 33.4 16 0.00055 34.0 1.7 58 808-866 115-172 (268)
167 2b6c_A Hypothetical protein EF 33.2 2.8E+02 0.0095 25.2 15.1 129 42-205 59-188 (220)
168 3d9j_A RNA-binding protein 16; 32.9 1.7E+02 0.0059 24.5 7.9 103 95-203 8-117 (145)
169 1dvp_A HRS, hepatocyte growth 32.3 1.3E+02 0.0046 27.4 7.8 73 793-867 42-114 (220)
170 3ut4_A CTHE_2751, putative unc 30.9 2.2E+02 0.0076 23.4 9.5 105 604-727 27-131 (134)
171 3s4w_B Protein FACD2, fanconi 23.6 1E+03 0.035 28.6 27.2 159 683-869 392-550 (1323)
172 4fu3_A Regulation of nuclear P 21.1 1.5E+02 0.0051 24.4 5.4 73 603-675 34-109 (135)
173 3rru_A TOM1L1 protein; structu 20.8 2.3E+02 0.0079 24.0 6.5 75 608-682 53-133 (152)
174 4flb_A Regulation of nuclear P 20.7 3.4E+02 0.012 22.0 11.9 66 407-489 6-72 (132)
No 1
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=5.1e-71 Score=659.09 Aligned_cols=843 Identities=32% Similarity=0.558 Sum_probs=721.4
Q ss_pred hHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 3 AEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 3 ~~l~~~l~~~-~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
|++.++|.++ .++|+++|++|+++|++++++++|+|+..|++++.+++.+.++|++|++.|||.++++|+.........
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 5799999999 999999999999999999987889999999999988667899999999999999999999887777788
Q ss_pred ccC-CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC-ChhHHHHHHHHHHHhh
Q 002876 82 WLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYIC 159 (872)
Q Consensus 82 ~~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~ 159 (872)
|.. ++++.+..+|+.+++.|.++++.+|+.++.+++.++.+++|...|+++++.+.+.+.++ ++.+|++++.+++.++
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~ 163 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 997 99999999999999999999999999999999999999988559999999999999988 8999999999999999
Q ss_pred hhccccc--cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHH
Q 002876 160 EEVSSDA--VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (872)
Q Consensus 160 ~~~~~~~--l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~ 237 (872)
+.+.++. + .++...+++.+.+.+.+.+++..||..|++++..++.++...+.....++.+++.+...+.++++++|.
T Consensus 164 ~~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~ 242 (861)
T 2bpt_A 164 ESADPQSQAL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242 (861)
T ss_dssp HTSSTTSSTT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HcCChhhhHH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHH
Confidence 9874432 4 578899999999999832238999999999999988777665544444567889988888899999999
Q ss_pred HHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHh
Q 002876 238 AAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKH 316 (872)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (872)
.++++|..++..+++.+.+++. .+++.++..+.+.+++++..++++|..+++...........+ +.+...+.++..+
T Consensus 243 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 320 (861)
T 2bpt_A 243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF--PQSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc--cCCchhhHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999988653321110000 0000002245667
Q ss_pred hhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhC
Q 002876 317 ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILE 396 (872)
Q Consensus 317 ~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~ 396 (872)
++..++|.++..+.+.++|+ +++.|++|.++..+++.++..+|+.+++.+++++.+.+.+++|..|++++.+++.+++
T Consensus 321 ~~~~il~~ll~~l~~~~~d~--~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNEDP--EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC---CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhccccc--ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 78889999999887654432 3456999999999999999999988999999999999999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHH
Q 002876 397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK 476 (872)
Q Consensus 397 ~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~ 476 (872)
++.++.+.++++.+++.+...+ .|+++.||.++++++++++...+.. .....+++.+++.+++.++++++||..
T Consensus 399 ~~~~~~~~~~l~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~l~~l~~~l~~~~~v~~~ 472 (861)
T 2bpt_A 399 GPDKVQRTYYVHQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAES-----IDPQQHLPGVVQACLIGLQDHPKVATN 472 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGG-----SCTTTTHHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhh-----cCCHHHHHHHHHHHHHHhccChHHHHH
Confidence 8754567788899999999999 9999999999999999999987521 113578999999999999888999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHH
Q 002876 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMME 556 (872)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 556 (872)
|++++..+++.+++ ..+..+.||++.+++.++..+.+.+. ++.+|..++++++.++...+....+++..++|.+++.
T Consensus 473 a~~al~~l~~~~~~--~~~~~l~~~~~~il~~L~~~l~~~d~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~ 549 (861)
T 2bpt_A 473 CSWTIINLVEQLAE--ATPSPIYNFYPALVDGLIGAANRIDN-EFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549 (861)
T ss_dssp HHHHHHHHHHHHSS--SSSCGGGGGHHHHHHHHHHHHTCSCC-GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHHhCcCc-chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHH
Confidence 99999999998742 01366889999999999999986543 4789999999999999999998999999999999999
Q ss_pred HHHHHh--hhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcccc-chhhHHHHHHH
Q 002876 557 LHQTLE--AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA-TAHEEAMLAIG 633 (872)
Q Consensus 557 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~a~~~l~ 633 (872)
|..... ....++++++....++..++.++..++..++.. +.++.+.+++.+...+++.+. .+++.++.+++
T Consensus 550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~ 623 (861)
T 2bpt_A 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS------VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623 (861)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH
Confidence 876521 011223343444467788999999999999875 889999999999999998876 89999999999
Q ss_pred HHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhH
Q 002876 634 ALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPI 713 (872)
Q Consensus 634 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~ 713 (872)
.++...|..+.+|++.++|.+...+++ +++.+|..++.+++.+++.++..+.||++.+++.++..+.+++.+.++|..+
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~ 702 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAV 702 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHH
Confidence 999999999999999999999999964 4568999999999999999999999999999999999998874458899999
Q ss_pred HHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHH
Q 002876 714 FSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPH 793 (872)
Q Consensus 714 ~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 793 (872)
+.++|.++...|+.|.+|++.++|.+...++...+. +|+|..++...+|.++++++.+++..++.. +..+.||++.
T Consensus 703 ~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~--~~~~~~~~~~ 778 (861)
T 2bpt_A 703 LSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPEN--GTLEALDYQIKVLEAVLDAYVGIVAGLHDK--PEALFPYVGT 778 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSS--SSHHHHHHHHHHHHHHHHHHHHHHHHTTTC--HHHHGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHH
Confidence 999999999999999999999999999988754322 345556777899999999999999886642 3678999999
Q ss_pred HHHHHHHHhcCCC-C-CHHHHHHHHHHHHHHHHHh-cCCccccccCchHHHHHHHHHh--cCCChhHHHHHHHHHHHHHH
Q 002876 794 ILQFLDSLYMEKD-M-DDVVTKTAIGVLGDLADTL-GSNAGPLIQQSVSSKDFLNECL--SSDDHMIKESAEWAKLAISK 868 (872)
Q Consensus 794 i~~~l~~~l~~~~-~-~~~v~~~a~~~l~~i~~~~-g~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 868 (872)
+++.+...+.+.+ . ++.+|..|+.+++.++..+ |+.+.++++.. +++.+++.+. .+.+...++.|.||++++.+
T Consensus 779 i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 779 IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQD-WVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCH-HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcH-HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 9999998887521 1 7899999999999999999 89999999943 8999999988 46778999999999999998
Q ss_pred Hhc
Q 002876 869 AIS 871 (872)
Q Consensus 869 ~~~ 871 (872)
.++
T Consensus 858 ~~~ 860 (861)
T 2bpt_A 858 QLS 860 (861)
T ss_dssp HHT
T ss_pred HhC
Confidence 765
No 2
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.5e-68 Score=638.99 Aligned_cols=848 Identities=40% Similarity=0.680 Sum_probs=712.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (872)
|++.++|+++.++|+++|++|+++|+++..+++++|+..|++++.+++.+..+|++|++.||+.+...|..........|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 58999999999999999999999999998877899999999999986568999999999999999888876666666789
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC--ChhHHHHHHHHHHHhhh
Q 002876 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICE 160 (872)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~al~~l~~i~~ 160 (872)
..++++.+..+|+.+++.+.++++.+ +.++.+++.++.+++|...|+++++.+.+.+.++ ++.+|.+++.+++.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888 9999999999999887679999999999999998 88999999999999998
Q ss_pred hccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 002876 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (872)
Q Consensus 161 ~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~ 240 (872)
.+.++.+ ..+.+.+++.+.+.+.+.+++..+|..|++++..++.+++..+.....++.+++.+...+.++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~ 238 (876)
T 1qgr_A 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (876)
T ss_dssp HSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8645555 678899999999998842237999999999999988776655544333456888888888888999999999
Q ss_pred HHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCC-CchHhHHHhh
Q 002876 241 ECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG-DFSGDSD-IPCFYFIKHA 317 (872)
Q Consensus 241 ~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 317 (872)
++|..++..+++.+.+++. .+++.++..+.+.+++++..++++|..+++....+..+... ..++... .+...+.+++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 9999999999999999998 99999999998889999999999999999765332111000 0000000 1123456667
Q ss_pred hhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCC
Q 002876 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (872)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~ 397 (872)
+..++|.++..+...++|+ +++.|++|.+|..+++.++..+|+.+++.+++.+.+.+.+++|++|++++.+++.++++
T Consensus 319 ~~~ll~~ll~~l~~~~~d~--~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDEND--DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSC--CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHhHHHHHHhhcccccc--cccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 7888999999887654432 34569999999999999999999888999999999999999999999999999999988
Q ss_pred CCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHH
Q 002876 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKA 477 (872)
Q Consensus 398 ~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a 477 (872)
..++.+.++++.+++.+...+ +|+++.||.+|+++++++++..+.. .....+++.+++.++..+.++++|+..+
T Consensus 397 ~~~~~~~~~~~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~~~v~~~a 470 (876)
T 1qgr_A 397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLSAEPRVASNV 470 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGG-----TSSTTTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCchh-----cccHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 753556678899999999999 9999999999999999999987521 1145789999999999998889999999
Q ss_pred HHHHHHHHHhcccC--------CCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHH
Q 002876 478 CGALYFLAQGFEDA--------ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQL 549 (872)
Q Consensus 478 ~~al~~l~~~~~~~--------~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l 549 (872)
++++..+++.+++. ...+..+.||++.+++.+...+.+.+..+..+|..++++++.++...+....+++..+
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l 550 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT 550 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 99999999886410 0013568899999999999999775422457888999999999999999899999999
Q ss_pred HHHHHHHHHHHHh--hhcCChhHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhhHhhHhHHHHHHHHHHHHhccc--cch
Q 002876 550 VPLIMMELHQTLE--AQKLSSDEREKQNEIQGLLCGCLQVIIQKLG-SSEQTKYVFMQYADQMMGLFLRVFAIRS--ATA 624 (872)
Q Consensus 550 ~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~ 624 (872)
++.+++.+..... ....+.+|++.+..++..++.+++.++..++ .. +.+|.+.+++.++..+++.+ ..+
T Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD------ALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH------HHTTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh------hhHHHHHHHHHHHHHHHhccCCCCc
Confidence 9999999876532 1112345655555677889999999998887 54 88999999999999998875 468
Q ss_pred hhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCC
Q 002876 625 HEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQ 704 (872)
Q Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 704 (872)
++.++.+++.++...|..+.||++.++|.+...+.+.++..+|..++.+++.+++..+..+.||++.+++.++..+.+++
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999998765678999999999999999999999999999999999998753
Q ss_pred CCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCC--
Q 002876 705 LHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSP-- 782 (872)
Q Consensus 705 ~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 782 (872)
.+.++|..++.++|.++..+|+.|.+|++.++|.+.+.++...+ .+|+|..+|...+|+.+++++.+++..++...
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~--~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~ 782 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD--KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN 782 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 36789999999999999999999999999999999998865532 23555677778999999999999988765421
Q ss_pred ---cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcC-CccccccCchHHHHHHHHHhcCCChhHHHH
Q 002876 783 ---KTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGS-NAGPLIQQSVSSKDFLNECLSSDDHMIKES 858 (872)
Q Consensus 783 ---~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~-~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ 858 (872)
....+.||++.+++++.....++..+..+|..|+.++|+++..+|+ .+.+++... ++++++..+.++.++.+|+.
T Consensus 783 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~i~~ll~~~l~~~~~~~r~~ 861 (876)
T 1qgr_A 783 VHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARP-MIHELLTEGRRSKTNKAKTL 861 (876)
T ss_dssp CCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSH-HHHHHHHHHHHCSCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcH-HHHHHHHHHhhcCCHhHHHH
Confidence 1257889999999999887765333789999999999999999998 888886543 89999997778889999999
Q ss_pred HHHHHHHHHHH
Q 002876 859 AEWAKLAISKA 869 (872)
Q Consensus 859 ~~~~~~~~~~~ 869 (872)
|.|+++.+.+.
T Consensus 862 a~~a~~~~~~~ 872 (876)
T 1qgr_A 862 ARWATKELRKL 872 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.8e-63 Score=586.52 Aligned_cols=741 Identities=19% Similarity=0.313 Sum_probs=630.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhc-CCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN-DEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
+++.++|++++|+|+++|++|+++|++++.+ |+|+..|..++.+ .+.+..+|++|++.|||.+.++
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~--p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~----------- 79 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQY--PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH----------- 79 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-----------
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhC--CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc-----------
Confidence 3689999999999999999999999999887 9999999999985 4679999999999999999855
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 161 (872)
|..++++.+..+|+.+++.|.++++.+|+.++.+++.+++++++ ..||++++.+.+.+.++++.+|++++.+++.+++.
T Consensus 80 w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 80 FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED 158 (852)
T ss_dssp GGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999999999999966 79999999999999999999999999999999998
Q ss_pred ccccccc----hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHH
Q 002876 162 VSSDAVE----QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ 237 (872)
Q Consensus 162 ~~~~~l~----~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~ 237 (872)
. ++.+. ...+..+++.+.+.+. ++++.+|..|++++..++...+..+. ...+.+++.++..++++++++|.
T Consensus 159 ~-~~~~~~~~~~~~~~~il~~l~~~l~--~~~~~vR~~A~~aL~~~~~~~~~~~~--~~~~~~l~~l~~~~~d~~~~vr~ 233 (852)
T 4fdd_A 159 S-AEILDSDVLDRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRTQALM--LHIDSFIENLFALAGDEEPEVRK 233 (852)
T ss_dssp H-TTHHHHCSSSSCHHHHHHHHTTTTT--CSSHHHHHHHHHHHHTTTTTTCHHHH--TSHHHHHHHHHHHHTCCCHHHHH
T ss_pred h-HHHhchhhhcchHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHcCCCCHHHHH
Confidence 7 54432 2347889999999998 88999999999999987653322211 11257888889989999999999
Q ss_pred HHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhh
Q 002876 238 AAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (872)
Q Consensus 238 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (872)
.++++|..+++.+++.+.+|++.+++.++..+.+.++++|..|+++|..+++.. .++++++++
T Consensus 234 ~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-----------------~~~~~~~~~ 296 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-----------------ICKDVLVRH 296 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-----------------THHHHHTTT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-----------------hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988521 133567788
Q ss_pred hhhHHHHHHHHHhcc---------c--CCcccCC--ccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhh
Q 002876 318 LPVLVPLLLETLLKQ---------E--EDQDQDE--GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQR 384 (872)
Q Consensus 318 l~~l~~~l~~~l~~~---------~--~d~~~~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r 384 (872)
++.++|.++..+.+. + +|+++|+ ..|++|++|..+++.++...|+.+++.+++++.+.+.+++|.+|
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R 376 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 376 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHH
Confidence 889999999887421 1 2221111 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHH
Q 002876 385 EAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLL 464 (872)
Q Consensus 385 ~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~ 464 (872)
++|+.+++.+++++. +.+.++++.+++.+...+ +|+++.||.++++++|+++++.+. .....++..+++.++
T Consensus 377 ~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 377 ESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVS------QPPDTYLKPLMTELL 448 (852)
T ss_dssp HHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHH------SCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHH
Confidence 999999999999884 566788899999999999 999999999999999999998752 235678999999999
Q ss_pred HhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCc-
Q 002876 465 QSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET- 542 (872)
Q Consensus 465 ~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~- 542 (872)
+.+.| +++||..|++++.++++.++ ..+.||++.+++.++..+.+.+ ......++++++.++...+...
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~~------~~l~~~l~~ll~~L~~~l~~~~---~~~~~~~~~ai~~l~~~~~~~~~ 519 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEAC------TELVPYLAYILDTLVFAFSKYQ---HKNLLILYDAIGTLADSVGHHLN 519 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHG------GGGGGGHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhh------HhhHhHHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhhhhhc
Confidence 99986 78999999999999999874 4589999999999999998764 2333468899999998887643
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc-
Q 002876 543 -APMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR- 620 (872)
Q Consensus 543 -~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~- 620 (872)
.+|+..++|.+++.|.... +++++ ++ .++++++.++..+|.. +.+|++++++.++..+...
T Consensus 520 ~~~~~~~l~p~l~~~~~~l~------d~~~~----~~-~~~~~l~~i~~~~g~~------~~~~~~~i~~~~~~~l~~~l 582 (852)
T 4fdd_A 520 KPEYIQMLMPPLIQKWNMLK------DEDKD----LF-PLLECLSSVATALQSG------FLPYCEPVYQRCVNLVQKTL 582 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHSC------TTCTT----HH-HHHHHHHHHHHHHGGG------GHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcc------cccHH----HH-HHHHHHHHHHHHHhHh------HHHHHHHHHHHHHHHHHHHH
Confidence 5699999999998876532 22332 22 4889999999999876 8899999888877776532
Q ss_pred ----------------ccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 621 ----------------SATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 621 ----------------~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
+.+++..++.+++.++..+|..+.+|+ +.+++.+...+++. ...+|..++.+++.++..++
T Consensus 583 ~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~ 661 (852)
T 4fdd_A 583 AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACF 661 (852)
T ss_dssp HHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHHhh
Confidence 344677889999999999999999998 78999999999764 46899999999999999999
Q ss_pred ccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHH
Q 002876 683 DKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNS 762 (872)
Q Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~ 762 (872)
..+.+|++.+++.+.+.+..+ +.+++.++++++|.++...|+++.||++.+++.|...+++.. ....
T Consensus 662 ~~~~~~l~~~lp~l~~~l~~~--~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~-----------~~~~ 728 (852)
T 4fdd_A 662 QHVKPCIADFMPILGTNLNPE--FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-----------TPKT 728 (852)
T ss_dssp GGTGGGHHHHHHHHHHTCCTT--SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS-----------CCHH
T ss_pred HHHHHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC-----------CCch
Confidence 999999999999999999665 567899999999999999999999999999999999997541 1246
Q ss_pred HHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCcccc
Q 002876 763 LRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPL 833 (872)
Q Consensus 763 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~ 833 (872)
++++++.+++.+... .++.+.||++.+++.+...+.+ ..+.+-|..++..++.+....+....+.
T Consensus 729 ~~~~a~~~igrl~~~-----~~~~~~~~l~~~~~~~~~~l~~-~~d~~e~~~a~~~l~~li~~~p~~~~~~ 793 (852)
T 4fdd_A 729 LLENTAITIGRLGYV-----CPQEVAPMLQQFIRPWCTSLRN-IRDNEEKDSAFRGICTMISVNPSGVIQD 793 (852)
T ss_dssp HHHHHHHHHHHHHHH-----CHHHHGGGHHHHHHHHHHHHHT-SCSSHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HHHHHHHHHHHHHHh-----CHHHhCccHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHHhChHhHHHH
Confidence 888999999998876 5567889999999999888875 3566779999999999999987654443
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=1.3e-45 Score=438.88 Aligned_cols=680 Identities=14% Similarity=0.154 Sum_probs=504.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhcc
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (872)
++.++|.++++||+++| |+++|++++++ |+|+..|++++.+.+.+.++|++|++.|||.++++|+... ...
T Consensus 6 ~l~~~L~~~~spd~~~r--Ae~~L~~~~~~--p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~-----~~~ 76 (960)
T 1wa5_C 6 TVAKFLAESVIASTAKT--SERNLRQLETQ--DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN-----GNH 76 (960)
T ss_dssp HHHHHHHHTTSGGGHHH--HHHHHHHHHTS--TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS-----SCB
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHhhcC--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcc-----cCC
Confidence 78999999999999998 99999999887 9999999999988777899999999999999998886431 124
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 002876 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (872)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 163 (872)
.++++.+..||+.+++.+.+++..+|++++.+++.|+++++| +.||++++.|.+.+++++...+++++.++..+++.+.
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999988899999999999999999999 7999999999999998888899999999999998762
Q ss_pred ccccc------------hhhHHHHHHHH---HhcccCCCCC-------HHHHHHHHHHHHHhHhh-chhhccChhhHHHH
Q 002876 164 SDAVE------------QDHVNKILTAV---VQGMNASESN-------NDVRLAATRALYNALGF-AQANFSNDMERDYI 220 (872)
Q Consensus 164 ~~~l~------------~~~~~~i~~~l---~~~l~~~~~~-------~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~i 220 (872)
. .+. ....+.+++.+ .+.+.+...+ ..++..+++++..+... .+..+. .....+
T Consensus 156 ~-~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~--~~~~~~ 232 (960)
T 1wa5_C 156 P-LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVG 232 (960)
T ss_dssp T-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHH
T ss_pred H-hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH--HHHHHH
Confidence 1 110 11222222222 2334421122 13334466666654321 111111 111233
Q ss_pred HHHHHHhhcC------CC---------HHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHh-----cCChhhHHHH
Q 002876 221 MRVVCEATLS------PE---------VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVR-----EDEEPVALQA 280 (872)
Q Consensus 221 l~~l~~~~~~------~~---------~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~v~~~a 280 (872)
++.+...+.. .+ +.+|+.+++++..+++.+++.+.++++.+++.++..+. ..++.++..+
T Consensus 233 ~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 312 (960)
T 1wa5_C 233 MGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKS 312 (960)
T ss_dssp HHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHH
T ss_pred HHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 4443433321 11 35789999999999999999999999999999998885 3456899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHH--hhhhhHH-HHHHHHHhcccCCcc--------------cCCccc
Q 002876 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK--HALPVLV-PLLLETLLKQEEDQD--------------QDEGAW 343 (872)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~-~~l~~~l~~~~~d~~--------------~~~~~~ 343 (872)
++||..+++... .+..++ ++++.++ +.++..|...++|.+ ++++.|
T Consensus 313 l~fl~~~~~~~~-----------------~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~ 375 (960)
T 1wa5_C 313 LSFLTAVTRIPK-----------------YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTD 375 (960)
T ss_dssp HHHHHHHHTSHH-----------------HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----
T ss_pred HHHHHHHhCcHh-----------------HHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCccccc
Confidence 999999876331 112222 6677777 677777754322210 134567
Q ss_pred hHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhc------CcchhhhHHHHHHHHHhhCCCC-CC-cch------HHHHH
Q 002876 344 NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT------KQEWRQREAATYAFGSILEGPS-PE-KLV------PLVNI 409 (872)
Q Consensus 344 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~------~~~~~~r~aal~~l~~l~~~~~-~~-~~~------~~~~~ 409 (872)
++|.+|..+|+.++..+++.+++.+++++.+.+. +++|+.|++|++++++++++.. .. ... ...+-
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 9999999999999999998888899998887776 6789999999999999986531 11 111 22222
Q ss_pred HHHHHHHHhccCC---cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 410 ALNFMLTALMQDP---NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 410 i~~~l~~~l~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
+...+...+ +|+ ++.||.+|+|++|+++++++ ++++..+++.+++.+.+ +++|+.+||++|.+|+
T Consensus 456 l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~----------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 456 FTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLT----------KAQLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSC----------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 345567777 777 99999999999999999762 46789999999999987 5899999999999999
Q ss_pred Hhccc-----CCCCCCCCchhHHHHHHHHHHhhccCCc--hhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHH
Q 002876 486 QGFED-----AISPSSPLTPFFQEIVQALLTVTHREDA--GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELH 558 (872)
Q Consensus 486 ~~~~~-----~~~~~~~l~~~l~~i~~~l~~~l~~~~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 558 (872)
+.... ....+..+.||++.+++.++..+..... ........++++++.++...++.+.||+..+++.+...+.
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 85320 0012466899999999999999876410 0111235789999999999999999999999999999887
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 002876 559 QTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYA 638 (872)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 638 (872)
.... +++++. ++..++++++.++...++. .+.++.+.+++.+...++....+..++++..++.+...
T Consensus 605 ~~~~----~~~~~~----~~~~~~e~l~~l~~~~~~~-----~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 605 IMAK----NPSNPR----FTHYTFESIGAILNYTQRQ-----NLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHTT----SCCCHH----HHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHh----CCCCcH----HHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 7532 233332 3455889999998874433 27788899999999999887777889999999999887
Q ss_pred hhhhhHhhhHHHHHHHH--hhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHH
Q 002876 639 TGQDFLKYMPEFYKYVE--MGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC 716 (872)
Q Consensus 639 ~~~~~~~~~~~i~~~l~--~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~ 716 (872)
. ..+.+++..++|.+. ..++.. . .......++..++...++.+.. +..++..+.+++.+.. .+..++.+
T Consensus 672 ~-~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~----~~~~a~~l 742 (960)
T 1wa5_C 672 S-ATIPESIKPLAQPLLAPNVWELK-G--NIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASKA----YEVHGFDL 742 (960)
T ss_dssp C-SSCCTTTGGGHHHHTSGGGGCCT-T--THHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTT----THHHHHHH
T ss_pred c-cCCCHHHHHHHHHHcCHHHhcCC-C--CchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCCc----ccchHHHH
Confidence 7 778899999999998 767644 2 2334556677766666555544 3455555555555442 24789999
Q ss_pred HHHHHHHhccc-hHHhHHHHHHHHHHHHhhc
Q 002876 717 FGDIALAIGEN-FEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 717 l~~i~~~~~~~-~~~~l~~il~~l~~~l~~~ 746 (872)
++.++..++.. |.+|++.+++.+...++..
T Consensus 743 l~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 743 LEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp HHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999988 9999999999999988654
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=8.1e-42 Score=409.98 Aligned_cols=758 Identities=13% Similarity=0.142 Sum_probs=542.9
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc
Q 002876 4 EVTQILLN-AQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (872)
Q Consensus 4 ~l~~~l~~-~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (872)
++.+++.. ..++|++.|++|+++|++++++ |++|..+..++.+ +.+.++|++|+++||+.+++ .|
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~-----------~w 90 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQAWHFSWQLLQP-DKVPEIQYFGASALHIKISR-----------YW 90 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHH-----------CG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHh-----------CH
Confidence 47788888 4568999999999999999998 9999999999876 67899999999999999975 45
Q ss_pred cCCChHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcC-----CChhHHHHHHHH
Q 002876 83 LSLDSSVKAQIKSFILKTLSS---PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQ-----LPPHTKQATLET 154 (872)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~r~~al~~ 154 (872)
..++++.+..+|+.+++.+.+ .+..||++++.+++.|+++++| ..||++++.+.+.+++ +++..+..++.+
T Consensus 91 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~i 169 (963)
T 2x19_B 91 SDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLEL 169 (963)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 679999999999999999876 3589999999999999999999 6899999999999876 356678899999
Q ss_pred HHHhhhhcc------------ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhcc----------
Q 002876 155 LGYICEEVS------------SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFS---------- 212 (872)
Q Consensus 155 l~~i~~~~~------------~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~---------- 212 (872)
+..++++.. .+.+ ...++.+++.+.+.+.+.+.+..++..+++|+..++. .+..+.
T Consensus 170 L~~l~ee~~~~~~~~~~r~~~~~~l-~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~ 247 (963)
T 2x19_B 170 LTVLPEEFQTSRLPQYRKGLVRTSL-AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAF 247 (963)
T ss_dssp HHHHHHHHTTCCC---------CCS-GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHH
T ss_pred HHhCHHHHhcccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHH
Confidence 999887541 1122 3567778887777776422233477778887766543 111000
Q ss_pred ----Ch-----------------------hhHHHHHHHHHH-------hhcCCCHHHHHHHHHHHHHHHHHhHHhhH---
Q 002876 213 ----ND-----------------------MERDYIMRVVCE-------ATLSPEVKIRQAAFECLVAISSTYYEKLA--- 255 (872)
Q Consensus 213 ----~~-----------------------~~~~~il~~l~~-------~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--- 255 (872)
.. .....+++.+.. .....+.+.....++.+..+++.++..+.
T Consensus 248 ~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 248 AALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp HHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 00 000111121111 11233445556667777777766665554
Q ss_pred ---hhHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHH
Q 002876 256 ---PYIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLE 327 (872)
Q Consensus 256 ---~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 327 (872)
+++..+++.++..... .++++...++++|..+++....+..+. .-......++++..+++.++.
T Consensus 328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~--------~~~~~~~~~~~l~~l~~~ll~ 399 (963)
T 2x19_B 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK--------QAVYQQVYRPVYFQLVDVLLH 399 (963)
T ss_dssp GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh--------hHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777766654 466789999999999987431100000 001234567888899999999
Q ss_pred HHhcccCCc-----ccCCccc-hHhHHHHHHHHHHHHHcCCcchhchHHHHHhhh----cCcchhhhHHHHHHHHHhhCC
Q 002876 328 TLLKQEEDQ-----DQDEGAW-NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI----TKQEWRQREAATYAFGSILEG 397 (872)
Q Consensus 328 ~l~~~~~d~-----~~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~----~~~~~~~r~aal~~l~~l~~~ 397 (872)
.+.+.++++ +++++.| +.|+++.+++..++...|+.+++.+.+.+.+.+ .+.+|+.|+++++++++++++
T Consensus 400 ~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~ 479 (963)
T 2x19_B 400 KAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 (963)
T ss_dssp HHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhh
Confidence 886533221 1112234 568899999999999999888888888888877 667899999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHH
Q 002876 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKA 477 (872)
Q Consensus 398 ~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a 477 (872)
+. +...++++.+++.+. .+ .++++.||.++++++|++++++.. ...+++.+++.++..+.+ ++|+..|
T Consensus 480 ~~-~~~~~~l~~l~~~l~-~l-~~~~~~vr~~~~~~l~~~~~~l~~--------~~~~l~~vl~~l~~~l~~-~~V~~~A 547 (963)
T 2x19_B 480 ID-VNYSDVVPGLIGLIP-RI-SISNVQLADTVMFTIGALSEWLAD--------HPVMINSVLPLVLHALGN-PELSVSS 547 (963)
T ss_dssp CC-SSCCSHHHHHHHHGG-GS-CCCSHHHHHHHHHHHHHTHHHHHH--------CHHHHTTTHHHHHHHTTC-GGGHHHH
T ss_pred cC-chhhHHHHHHHHHHH-hC-CCCcHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHhCC-chHHHHH
Confidence 85 445567788888544 45 567899999999999999998752 347888999999999965 8999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccc-cCcHHHHHHHHHHHHHH
Q 002876 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST-DETAPMVMQLVPLIMME 556 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~ 556 (872)
|+++.++++.+ +..+.||++.+++.+...+.+.+. +...+..++++++.++...+ +...+|+..+++.+.+.
T Consensus 548 ~~al~~l~~~~------~~~l~p~~~~il~~l~~~l~~~~~-~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 548 VSTLKKICREC------KYDLPPYAANIVAVSQDVLMKQIH-KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp HHHHHHHHHHT------GGGCTTTHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHhhHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999886 456889999999999998875432 35678899999999998886 67889999999999999
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------hhhHhhHhHHHHHHHHHHHHhcc
Q 002876 557 LHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ----------------TKYVFMQYADQMMGLFLRVFAIR 620 (872)
Q Consensus 557 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~----------------~~~~~~~~~~~i~~~l~~~l~~~ 620 (872)
|......+ .+++.+ ..+...+++|+.++..++.... ....+.++.+.+++.+..++...
T Consensus 621 l~~~~~~~-~~~~~~----~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 695 (963)
T 2x19_B 621 LEKLAEEI-PNPSNK----LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695 (963)
T ss_dssp HHHHHSSC-SCHHHH----HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCHHHH----HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 98764311 112211 2344678889888888874210 11235567788888888877653
Q ss_pred --ccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh--ccccccHHHHHHHH
Q 002876 621 --SATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE--DKILPYCDGIMTQL 696 (872)
Q Consensus 621 --~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l 696 (872)
+..+.+.++.+++.++..+|+.+.||++.+++.+......... ...+.+++.++..++ +...+++..+++.+
T Consensus 696 ~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~ 771 (963)
T 2x19_B 696 LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLV 771 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 4578899999999999999999999999999998877764322 246778888888444 33556666655554
Q ss_pred HH----Hcc-CCCCCCCCchhHHHHHHHHHHHhccchH--Hh-HHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHH
Q 002876 697 LK----DLS-SNQLHRSVKPPIFSCFGDIALAIGENFE--KY-LMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGIL 768 (872)
Q Consensus 697 ~~----~l~-~~~~~~~v~~~~~~~l~~i~~~~~~~~~--~~-l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~ 768 (872)
+. +++ +....++++...+..++++....+..+. +. ++.+++.+...++.. + ..+.++++
T Consensus 772 ~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~------~-------~~~~~~~l 838 (963)
T 2x19_B 772 TSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFP------E-------APTVKASC 838 (963)
T ss_dssp HHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCS------C-------HHHHHHHH
T ss_pred HHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC------C-------HHHHHHHH
Confidence 44 343 2222567889999999999998876653 44 888888888887643 2 24556678
Q ss_pred HHHHHHhhcccCCCc-ccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcC
Q 002876 769 EAFSGIFQGFKGSPK-TQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGS 828 (872)
Q Consensus 769 ~~~~~l~~~~~~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~ 828 (872)
+.+..++........ .+-+.+|...++..+...+.+......+ .....++..+....+.
T Consensus 839 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~il~~l~~~~~~ 898 (963)
T 2x19_B 839 GFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLM-DCFADILFALNKHCFS 898 (963)
T ss_dssp HHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGH-HHHHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHH-HHHHHHHHHHHHHChH
Confidence 888888765432111 1224577778888777777653333333 3444445555555444
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-43 Score=422.78 Aligned_cols=763 Identities=13% Similarity=0.136 Sum_probs=524.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhcc
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (872)
++.+++..++++|++.|++|+++|++++++ |++|..+.+++.. +.+.++|++|+++||+.+++ .|.
T Consensus 8 ~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~--p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~-----------~w~ 73 (971)
T 2x1g_F 8 RLEEAVVSFYRSNSQNQAITHEWLTDAEAS--PQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMK-----------HWH 73 (971)
T ss_dssp ---CTHHHHHTSTTTC----CHHHHHTTTS--THHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHH-----------CGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHc-----------cHh
Confidence 477888889999999999999999999998 9999999999976 56899999999999999975 466
Q ss_pred CCChHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC------ChhHHHHHHHH
Q 002876 84 SLDSSVKAQIKSFILKTLSSP---AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL------PPHTKQATLET 154 (872)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~---~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~------~~~~r~~al~~ 154 (872)
.++++.+..+|+.+++.+.+. +..||++++.+++.++.+++| .|+++++.+.+.++++ ++..+..++.+
T Consensus 74 ~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i 151 (971)
T 2x1g_F 74 EVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEV 151 (971)
T ss_dssp GCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHH
Confidence 799999999999999998752 589999999999999999998 9999999999998775 46788899999
Q ss_pred HHHhhhhcc-c----------cccchhhHHHHHHHHHhcccCCCCC------HHHHHHHHHHHHHhHhh--chhh-----
Q 002876 155 LGYICEEVS-S----------DAVEQDHVNKILTAVVQGMNASESN------NDVRLAATRALYNALGF--AQAN----- 210 (872)
Q Consensus 155 l~~i~~~~~-~----------~~l~~~~~~~i~~~l~~~l~~~~~~------~~vr~~al~~l~~~~~~--~~~~----- 210 (872)
+..++++.. . +.+ ...++.+++.+.+.+...+.+ ..++..+++|+..++.+ .+..
T Consensus 152 L~~l~EEi~~~~~~~~r~~~~~~l-~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~l 230 (971)
T 2x1g_F 152 LTAIPEEAQVIHTSVKRVVLRAEI-AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTI 230 (971)
T ss_dssp HHHHHHHHHHCCCSSCHHHHHHHH-HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred HHHhHHHHhccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccH
Confidence 998887531 1 112 235667777776666421111 27899999999887662 2211
Q ss_pred ----c--------------------cChhh-----------------------HHHHHHHHHH-------hhcCCC---H
Q 002876 211 ----F--------------------SNDME-----------------------RDYIMRVVCE-------ATLSPE---V 233 (872)
Q Consensus 211 ----~--------------------~~~~~-----------------------~~~il~~l~~-------~~~~~~---~ 233 (872)
+ ..... ...+++.+.. ...+.+ .
T Consensus 231 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~ 310 (971)
T 2x1g_F 231 TAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNE 310 (971)
T ss_dssp HHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCS
T ss_pred HHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccch
Confidence 0 00000 0011111111 123334 2
Q ss_pred HHHHHHHHHHHHHHHHhHHhhH-----------hhHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHHHHHHHHHHh
Q 002876 234 KIRQAAFECLVAISSTYYEKLA-----------PYIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEEIDILEE 297 (872)
Q Consensus 234 ~~r~~~~~~l~~l~~~~~~~~~-----------~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (872)
+.....++.+..+.+.++..+. +++..+++.++..+.. .++++...+++||..+++...+....
T Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~ 390 (971)
T 2x1g_F 311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSND 390 (971)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccc
Confidence 6677778888887776665443 4566777777776543 47789999999999998743211100
Q ss_pred cCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCc------ccCCccchHhHHHHHHHHHHHHHcCCcchhchHHH
Q 002876 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQ------DQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPF 371 (872)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~------~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 371 (872)
..........++++..+++.++..+...++++ +++++..+.|+++.+++..++...|+.+++.+.++
T Consensus 391 -------~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~ 463 (971)
T 2x1g_F 391 -------EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAM 463 (971)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred -------cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 00001335667888899999998886433211 01111236789999999999998898889999988
Q ss_pred HHhhhcC-----cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHhhhhccCC
Q 002876 372 VEENITK-----QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ--DPNNHVKDTTAWTLGRMFEFLHGS 444 (872)
Q Consensus 372 l~~~~~~-----~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~--d~~~~vr~~a~~~l~~l~~~~~~~ 444 (872)
+.+.+.+ .+|+.|++++++++++++++. +...++++.+++ ++..+ . |+++.||.++++++|++++++..
T Consensus 464 l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~-~~~~~~l~~l~~-~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~- 539 (971)
T 2x1g_F 464 LDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG-GEEKRQIPRLMR-VLAEI-PYEKLNVKLLGTALETMGSYCNWLME- 539 (971)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC--
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHH-HHHhc-CccccCHHHHHHHHHHHHHHHHHHhc-
Confidence 8877754 689999999999999999985 444567788888 55566 5 57999999999999999999852
Q ss_pred CCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhH
Q 002876 445 TLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLR 524 (872)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~ 524 (872)
...+++.+++.++.++ + ++|+..|++++.++++.++ ..+.||++.+++.+...+.+... +...+
T Consensus 540 -------~~~~l~~vl~~l~~~l-~-~~v~~~A~~al~~l~~~~~------~~l~p~~~~ll~~l~~~l~~~~~-~~~~~ 603 (971)
T 2x1g_F 540 -------NPAYIPPAINLLVRGL-N-SSMSAQATLGLKELCRDCQ------LQLKPYADPLLNACHASLNTGRM-KNSDS 603 (971)
T ss_dssp ----------CHHHHHHHHHHHH-H-SSCHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHSTTS-CHHHH
T ss_pred -------CHHHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHcCCCC-ChHHH
Confidence 3479999999999999 4 8999999999999999873 56889999999999999987432 45678
Q ss_pred HHHHHHHHHHHHccc-cCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcc--h---
Q 002876 525 TAAYETLNEVVRCST-DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQ--T--- 598 (872)
Q Consensus 525 ~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~--- 598 (872)
..++++++.++...+ +...+++..+++++++.|.........++++.. -...++++|+.++..++.... .
T Consensus 604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~----~~~~~l~~L~~~~~~l~~~~~~~~~~~ 679 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARI----RTIFRLNMISTLFSSLNTDVDEQATDQ 679 (971)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHH----HHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHH----HHHHHHHHHHHHHhhcCCCcCcccccc
Confidence 899999999998876 667889999999999999876542211122221 122366677777776654200 0
Q ss_pred --hhHhhHhHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002876 599 --KYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVV 674 (872)
Q Consensus 599 --~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l 674 (872)
...+.++.+.+++.+..+++.. +..+.+.++.++++++..+|+.+.||++.+++.+...+++... ..+++++
T Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~----~~~l~l~ 755 (971)
T 2x1g_F 680 PIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC----APTLEIS 755 (971)
T ss_dssp ----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC----HHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc----hHHHHHH
Confidence 1237788899999999888753 4578999999999999999999999999999999988876432 3588999
Q ss_pred HHHHHHHhcc--cc----ccHHHHHHHHHHHccCC-----CCCCCCchhHHHHHHHHHHHhccchH--Hh-HHHHHHHHH
Q 002876 675 GDLCRALEDK--IL----PYCDGIMTQLLKDLSSN-----QLHRSVKPPIFSCFGDIALAIGENFE--KY-LMYAMPMLQ 740 (872)
Q Consensus 675 ~~l~~~~~~~--~~----~~~~~i~~~l~~~l~~~-----~~~~~v~~~~~~~l~~i~~~~~~~~~--~~-l~~il~~l~ 740 (872)
+.+++.++.+ .. +.+..+...++..+... ..+++++...+..++++....+..+. +. ++.+++...
T Consensus 756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~ 835 (971)
T 2x1g_F 756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ 835 (971)
T ss_dssp HHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 9999888753 33 33444445555555442 11456888889999999988877665 67 888999888
Q ss_pred HHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccch----HHHHHHHHHHhcCCCCCHHHHHHHH
Q 002876 741 SAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYA----PHILQFLDSLYMEKDMDDVVTKTAI 816 (872)
Q Consensus 741 ~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~i~~~l~~~l~~~~~~~~v~~~a~ 816 (872)
..+... +. ...+++++.+..++.. +. ....+.+++ +.++..+...+.+ ....+....+.
T Consensus 836 ~~l~~~------~~-------~~~~s~~~fl~~~i~~-~~--~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~s~~~~~a 898 (971)
T 2x1g_F 836 RGMTLP------ES-------GAIRNSIQFLTHFVMQ-SR--NHAHVTEVVLATGEQTLYTAMMCVGY-LTPRSQVDKFA 898 (971)
T ss_dssp HHHTSS------CS-------SHHHHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHHHHHHHHHHHT-TSCGGGGGGGH
T ss_pred HHcCCC------CH-------HHHHHHHHHHHHHHhc-CC--chHHHHHHHHHhHHHHHHHHHHHhcc-cCChhHHHHHH
Confidence 888643 11 1223455556555443 11 122233444 3344444333333 23455556667
Q ss_pred HHHHHHHHHhcCCcccccc
Q 002876 817 GVLGDLADTLGSNAGPLIQ 835 (872)
Q Consensus 817 ~~l~~i~~~~g~~~~~~~~ 835 (872)
.+++.+...+|+.+.+|+.
T Consensus 899 ~~l~~l~~~~~~~~~~~l~ 917 (971)
T 2x1g_F 899 DILLAMNRKYAAEMAVWMK 917 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHH
Confidence 7788888887766666543
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=5.5e-43 Score=385.46 Aligned_cols=456 Identities=42% Similarity=0.717 Sum_probs=385.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW 82 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~ 82 (872)
|++.++|.+++++|+++|++|+++|+++++++.|+|+..|++++.+.+.+..+|++|+++|||.++++|+.........|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 57999999999999999999999999998866699999999999986678999999999999999999988766666789
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC--ChhHHHHHHHHHHHhhh
Q 002876 83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL--PPHTKQATLETLGYICE 160 (872)
Q Consensus 83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~al~~l~~i~~ 160 (872)
..++++.+..+|+.+++.+.++++.+ +.++.+++.++.+++|...|+++++.+.+.+.++ ++.+|++++.+++.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999889 9999999999999988569999999999999988 88999999999999999
Q ss_pred hccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 002876 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240 (872)
Q Consensus 161 ~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~ 240 (872)
...++.+ .++.+.+++.+.+.+.+.++++.||..|+++++.++.++.+.+......+.+++.+...+.++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8745555 678889999999999842228999999999999988766654443333456788888888889999999999
Q ss_pred HHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCC-CchHhHHHhh
Q 002876 241 ECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG-DFSGDSD-IPCFYFIKHA 317 (872)
Q Consensus 241 ~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 317 (872)
++|..++..+++.+.++++ .+++.++..+.+.+++++..++++|..+++........... ..++.+. .+...+++++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999865333211111 1111110 1233567778
Q ss_pred hhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCC
Q 002876 318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG 397 (872)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~ 397 (872)
++.++|.++..+...++| ++++.|++|.+|..+|+.++..+|+.+++.+++++.+.+.+++|++|++++.+++.++++
T Consensus 319 ~~~l~p~l~~~l~~~d~d--~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDEN--DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTTCCCSS--CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred hhhccHHHHHHHHhcccc--cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 889999999988764433 334679999999999999999999889999999999999999999999999999999998
Q ss_pred CCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc
Q 002876 398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (872)
Q Consensus 398 ~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (872)
+.++.+.++++.++|.+...+ +|+++.||.+|+++++++++..+.. .....+++++++.+++.|+
T Consensus 397 ~~~~~~~~~l~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SCTTTTCTTTTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHGGGG-----CCSTTTHHHHHHHHHCC--
T ss_pred CcHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHhc
Confidence 754556777889999999999 9999999999999999999988631 1245799999999988764
No 8
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=9.1e-41 Score=400.60 Aligned_cols=753 Identities=14% Similarity=0.155 Sum_probs=524.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhcc
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (872)
++.++|+.+++|++++|++|+++|++++++ |++|..+.+++.+ +.+..+|++|+++||+.+++ .|.
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~-----------~W~ 82 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLITR-----------KWK 82 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--TTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHH-----------TGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHh-----------hCc
Confidence 688999999999999999999999999998 8999999999977 56899999999999999975 466
Q ss_pred CCChHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHH
Q 002876 84 SLDSSVKAQIKSFILKTLSSP---------AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLET 154 (872)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~---------~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~ 154 (872)
.++++.+..+|+.+++.+.+. +..+|++++.+++.++++++| ..||++++.+.+.++ .++..+..++.+
T Consensus 83 ~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIV 160 (1049)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHH
Confidence 799999999999999998753 378999999999999999999 799999999999997 556678888999
Q ss_pred HHHhhhhcc---c------------cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHH
Q 002876 155 LGYICEEVS---S------------DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDY 219 (872)
Q Consensus 155 l~~i~~~~~---~------------~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 219 (872)
|..+++++. . +.+ ..+++.+++.+.+.+.+ ..+..++..+++|+..++.+.+...... +.
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l-~~~~~~i~~~~~~~l~~-~~~~~~~~~aL~~l~~~l~wi~~~~~~~---~~ 235 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSM-SKEFEQIFKLCFQVLEQ-GSSSSLIVATLESLLRYLHWIPYRYIYE---TN 235 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTHHHHS---SS
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhCCHHHHhh---hh
Confidence 998887652 1 112 34567778888877764 4568899999999998877654221000 11
Q ss_pred HHHHHHH-hh-------------------------------------------------------------cCCCHHHHH
Q 002876 220 IMRVVCE-AT-------------------------------------------------------------LSPEVKIRQ 237 (872)
Q Consensus 220 il~~l~~-~~-------------------------------------------------------------~~~~~~~r~ 237 (872)
+++.+++ ++ .+.+.+...
T Consensus 236 ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~ 315 (1049)
T 3m1i_C 236 ILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQ 315 (1049)
T ss_dssp HHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHH
T ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHH
Confidence 2222221 11 111222333
Q ss_pred HHHHHHHHHHHHhHHh------hHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchH
Q 002876 238 AAFECLVAISSTYYEK------LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCF 311 (872)
Q Consensus 238 ~~~~~l~~l~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (872)
..++.+..++..+... +.+++..+++.++.....+++++...++++|..+++.... .+ ...
T Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~--~~-----------~~~ 382 (1049)
T 3m1i_C 316 DLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY--EP-----------LKK 382 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH--ST-----------TCG
T ss_pred HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--ch-----------hHH
Confidence 3444444443333222 2334556677777766777888999999999999874211 00 122
Q ss_pred hHHHhhhhhHHHHHHHHHhcccCCc-------------ccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcC
Q 002876 312 YFIKHALPVLVPLLLETLLKQEEDQ-------------DQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITK 378 (872)
Q Consensus 312 ~~~~~~l~~l~~~l~~~l~~~~~d~-------------~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~ 378 (872)
...+++++.+++.++..|.+.++++ .+|++.|+.|+++.++|..++...+..+++.+.+.+.+.+.+
T Consensus 383 ~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~ 462 (1049)
T 3m1i_C 383 HIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG 462 (1049)
T ss_dssp GGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCC
Confidence 4557888899999999887643221 012346788999999999999888888889999999888753
Q ss_pred --cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhcc-----CCcHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 002876 379 --QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-----DPNNHVKDTTAWTLGRMFEFLHGSTLETPII 451 (872)
Q Consensus 379 --~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 451 (872)
.+|+.|++++++++++++.+.......+++.+++.+.... . |+++.+|..+++++|++++++..
T Consensus 463 ~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~-~~~~~~~~~~~v~~~~~~~lgry~~~~~~-------- 533 (1049)
T 3m1i_C 463 SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT-VKKRGKDNKAVVASDIMYVVGQYPRFLKA-------- 533 (1049)
T ss_dssp SSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT-TSSCSHHHHHHHHHHHHHHHHHCHHHHHH--------
T ss_pred CCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH-hhhccccchHHHHHHHHHHHHHHHHHHHh--------
Confidence 6799999999999999987742222345788888877644 2 46788888899999999998752
Q ss_pred CccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCC--CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHH
Q 002876 452 NQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI--SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAY 528 (872)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~--~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~ 528 (872)
+..+++.+++.++.++.+ +++|+..||+++.++++.++... ..+..+.||++.+++.+...+...+ ..-...++
T Consensus 534 ~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~---~~~~~~~~ 610 (1049)
T 3m1i_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ---PQQVHTFY 610 (1049)
T ss_dssp CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence 467899999999999987 79999999999999999875320 1244556999999999999888754 22345789
Q ss_pred HHHHHHHHcccc--CcHHHHHHHHHHHHHHHHHHHhhhcCChh---HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhh
Q 002876 529 ETLNEVVRCSTD--ETAPMVMQLVPLIMMELHQTLEAQKLSSD---EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFM 603 (872)
Q Consensus 529 ~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 603 (872)
++++.++...+. ...+++..+++.+++.|.........+.+ +.+....+ ..++.++..++..+|.. +.
T Consensus 611 eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~l~~~~~~~~~l~~~------f~ 683 (1049)
T 3m1i_C 611 KACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII-ANIIKTNVAVCTSMGAD------FY 683 (1049)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHH-HHHHHHHHHHHHHHGGG------GH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHH-HHHHHHHHHHHHHhhHH------HH
Confidence 999999998883 47889999999999998876542211111 22222222 35678889999999977 88
Q ss_pred HhHHHHHHHHHHHHhccc-----------c-c-------hhhHHHHHHHHHHHHh-------hhhhHhhhHHHHHHHHhh
Q 002876 604 QYADQMMGLFLRVFAIRS-----------A-T-------AHEEAMLAIGALAYAT-------GQDFLKYMPEFYKYVEMG 657 (872)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~-----------~-~-------~~~~a~~~l~~l~~~~-------~~~~~~~~~~i~~~l~~~ 657 (872)
|+++.++..++.+++... . . ........+.+++... +..+.|+++.++..++..
T Consensus 684 p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 763 (1049)
T 3m1i_C 684 PQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLED 763 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 888877776665544310 0 0 0112222222333222 223446666666666655
Q ss_pred hcCCChhhHH-HHHHHHHHHHHHHHhccccccHHHHHHHHHHHc-----cCCCCCCCCchhHHHHHHHHHHHhccchHH-
Q 002876 658 LQNFEDYQVC-AITVGVVGDLCRALEDKILPYCDGIMTQLLKDL-----SSNQLHRSVKPPIFSCFGDIALAIGENFEK- 730 (872)
Q Consensus 658 l~~~~~~~v~-~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l-----~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~- 730 (872)
.+... ...| ..++.+++.++..++..+.||++.+++.++... ++....++++...+..+++++......+.+
T Consensus 764 ~~~~~-~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~ 842 (1049)
T 3m1i_C 764 YMNNV-PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL 842 (1049)
T ss_dssp HHHSC-GGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHS
T ss_pred HHhCC-cccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcC
Confidence 43211 1111 357889999999999889999999888887764 332226779999999999999887776653
Q ss_pred ---hHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCc---c-cccccchHHHHHHHHHHhc
Q 002876 731 ---YLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPK---T-QLLMPYAPHILQFLDSLYM 803 (872)
Q Consensus 731 ---~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~i~~~l~~~l~ 803 (872)
.+..++.....+++.. + ..+.+++++.+..++........ . .-+..|...++..+...+.
T Consensus 843 ~~~~~~~v~~~~~~al~~~------~-------~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~ 909 (1049)
T 3m1i_C 843 PPAAFKLFVDAICWAFKHN------N-------RDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLT 909 (1049)
T ss_dssp CHHHHHHHHHHHHHHHTCC------S-------HHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC------C-------chHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2455555566566443 1 34566777778887776442101 1 1133455567777777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 002876 804 EKDMDDVVTKTAIGVLGDLAD 824 (872)
Q Consensus 804 ~~~~~~~v~~~a~~~l~~i~~ 824 (872)
+.. +.+--.....++..+..
T Consensus 910 ~~~-h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 910 DSD-HKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp STT-CGGGHHHHHHHHHHHHH
T ss_pred cch-HhhhHHHHHHHHHHHHH
Confidence 643 34333334455555443
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.9e-40 Score=390.02 Aligned_cols=724 Identities=12% Similarity=0.153 Sum_probs=553.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHH
Q 002876 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNL--------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (872)
Q Consensus 6 ~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~--------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (872)
..++....+.+..+|..|...|+..-..+. ...-..+++.+.+ .+..+|..++..+.......+.
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~--~~~~vr~~~a~~i~~ia~~~~~----- 123 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD--SSPLIRATVGILITTIASKGEL----- 123 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCc-----
Confidence 344554456788999999999986543311 2233445555553 4789999999999887764332
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcC-------CCCchhHHHHHHHhhcCCChhHHHH
Q 002876 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP-------HKQWPELIGALLSNIHQLPPHTKQA 150 (872)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-------~~~~~~l~~~l~~~l~~~~~~~r~~ 150 (872)
..|.. +.+.+++.+.++++.+|..+..+++.++....+ ...+..+++.+.+.++++++.+|..
T Consensus 124 --~~wp~--------ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~ 193 (852)
T 4fdd_A 124 --QNWPD--------LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSH 193 (852)
T ss_dssp --TTCTT--------HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHH
T ss_pred --cccHH--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHH
Confidence 35643 456678888999999999999999999876522 1236789999999999999999999
Q ss_pred HHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcC
Q 002876 151 TLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS 230 (872)
Q Consensus 151 al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 230 (872)
|+.++..++... ++.+ ...++.+++.+.+.+. ++++.+|..|++++..++...++.+.. ..+.+++.+...+.+
T Consensus 194 A~~aL~~~~~~~-~~~~-~~~~~~~l~~l~~~~~--d~~~~vr~~a~~~L~~l~~~~~~~~~~--~l~~l~~~l~~~~~~ 267 (852)
T 4fdd_A 194 AVACVNQFIISR-TQAL-MLHIDSFIENLFALAG--DEEPEVRKNVCRALVMLLEVRMDRLLP--HMHNIVEYMLQRTQD 267 (852)
T ss_dssp HHHHHHTTTTTT-CHHH-HTSHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHCHHHHGG--GHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcc-cHHH-HHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCHHHHHH--HHHHHHHHHHHHccC
Confidence 999998877654 3333 4567788888888887 889999999999999998766655442 235688888888889
Q ss_pred CCHHHHHHHHHHHHHHHHH--hHHhhHhhHHHHHHHHHHHHh-----------c-----------CChhhHHHHHHHHHH
Q 002876 231 PEVKIRQAAFECLVAISST--YYEKLAPYIQDIFNITAKAVR-----------E-----------DEEPVALQAIEFWSS 286 (872)
Q Consensus 231 ~~~~~r~~~~~~l~~l~~~--~~~~~~~~~~~l~~~~~~~~~-----------~-----------~~~~v~~~a~~~~~~ 286 (872)
.++++|..++++|..+++. ....+.++++.+++.++..+. + .+..+|..+..++..
T Consensus 268 ~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 9999999999999998763 344567888899998888762 2 112367777777777
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC---c
Q 002876 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---D 363 (872)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~ 363 (872)
++... -...++.++|.+.+.+.. ..|.+|.+|..+++.++...++ .
T Consensus 348 la~~~----------------------~~~~~~~l~~~l~~~l~~---------~~~~~R~aa~~alg~i~~~~~~~~~~ 396 (852)
T 4fdd_A 348 LANVY----------------------RDELLPHILPLLKELLFH---------HEWVVKESGILVLGAIAEGCMQGMIP 396 (852)
T ss_dssp HHHHH----------------------GGGGHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred HHHhc----------------------cHHHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcchHHHHH
Confidence 77532 123445567777666542 2499999999999998875532 3
Q ss_pred chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccC
Q 002876 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (872)
Q Consensus 364 ~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
.++.+++.+...+.|+++.+|.+++.+++.+++.........++..+++.++..+ .|+++.||.+|+++++.+++..+.
T Consensus 397 ~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhH
Confidence 5677888888999999999999999999998875533345667889999999999 999999999999999999998752
Q ss_pred CCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhh
Q 002876 444 STLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESR 522 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~ 522 (872)
....|++.+++.++..+++ +.+....+..+++.+++..++. -.-.+|++.+++.+++.+..-...++.
T Consensus 476 -------~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~----~~~~~~~~~l~p~l~~~~~~l~d~~~~ 544 (852)
T 4fdd_A 476 -------ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH----LNKPEYIQMLMPPLIQKWNMLKDEDKD 544 (852)
T ss_dssp -------GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG----GCCHHHHHHHHHHHHHHHHHSCTTCTT
T ss_pred -------hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh----hccHHHHHHHHHHHHHHHHhcccccHH
Confidence 2456899999999999875 4455556777888888766432 122458899999888644322111455
Q ss_pred hHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhh--------cCChhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 002876 523 LRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ--------KLSSDEREKQNEIQGLLCGCLQVIIQKLGS 594 (872)
Q Consensus 523 v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 594 (872)
++ .++++++.++...|..+.+|++.+++.+++.+....... .....+. .++..++.+++.++..++.
T Consensus 545 ~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~----~~~~~~l~~l~~l~~~l~~ 619 (852)
T 4fdd_A 545 LF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK----DFMIVALDLLSGLAEGLGG 619 (852)
T ss_dssp HH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT----HHHHHHHHHHHHHHHHHGG
T ss_pred HH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc----hHHHHHHHHHHHHHHHHhH
Confidence 65 789999999999999999999999999888887654210 0011122 3566789999999999987
Q ss_pred CcchhhHhhHhH--HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHH
Q 002876 595 SEQTKYVFMQYA--DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVG 672 (872)
Q Consensus 595 ~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~ 672 (872)
. +.+++ +.+++.++.++++++..+|+.++.+++.++..++..+.+|++.++|.+.+.+. .+++.+|..|++
T Consensus 620 ~------~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~-~~~~~v~~~a~~ 692 (852)
T 4fdd_A 620 N------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN-PEFISVCNNATW 692 (852)
T ss_dssp G------GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC-TTSHHHHHHHHH
T ss_pred h------HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-ccchHHHHHHHH
Confidence 6 88887 68999999999998899999999999999999999999999999999999996 446799999999
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCC
Q 002876 673 VVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGV 752 (872)
Q Consensus 673 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~ 752 (872)
++|.++..++..+.||++.+++.++.+++++..+..++++++.++|+++...++.+.|+++++++.+...+....
T Consensus 693 alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~----- 767 (852)
T 4fdd_A 693 AIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR----- 767 (852)
T ss_dssp HHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcccc-----
Confidence 999999999999999999999999999998765667899999999999999877778999999999999997652
Q ss_pred CccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 002876 753 DDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 753 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g 827 (872)
|. ..|+.+...+..++.. .++.+.+.+..++..+. .....+.+++.....++...-..+|
T Consensus 768 d~-------~e~~~a~~~l~~li~~-----~p~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~~~~~~ 827 (852)
T 4fdd_A 768 DN-------EEKDSAFRGICTMISV-----NPSGVIQDFIFFCDAVA---SWINPKDDLRDMFCKILHGFKNQVG 827 (852)
T ss_dssp SS-------HHHHHHHHHHHHHHHH-----CGGGTGGGHHHHHHHHH---TCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-------HHHHHHHHHHHHHHHh-----ChHhHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 32 2356688888888876 55555565555555443 3334567777776666655555554
No 10
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.5e-37 Score=361.39 Aligned_cols=737 Identities=15% Similarity=0.230 Sum_probs=501.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhcc
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (872)
++.+++..+++|+++.|++|+++|++++++ |++|..+..++.+ +.++++|++|+++|++.+++ .|.
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~-----------~W~ 82 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLITR-----------KWK 82 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHH-----------HGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--ccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh-----------hhh
Confidence 678899999999989999999999999998 8999999899876 55899999999999999985 566
Q ss_pred CCChHHHHHHHHHHHHhcCC----C-----ChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHH
Q 002876 84 SLDSSVKAQIKSFILKTLSS----P-----AHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLET 154 (872)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~----~-----~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~ 154 (872)
.++++.+..+|+.+++.+.. + ...++++++.+++.++.+++| ..||++++.+.+.+++ ++..+..++.+
T Consensus 83 ~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~i 160 (1023)
T 4hat_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIV 160 (1023)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 79999999999999998754 1 357888999999999999999 6999999999999875 45667888999
Q ss_pred HHHhhhhcc---ccccc-----------hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHH
Q 002876 155 LGYICEEVS---SDAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (872)
Q Consensus 155 l~~i~~~~~---~~~l~-----------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (872)
|..+.+++. .+.+. ...++.+++.+.+.+.. ..++.+...+++|++.++.+++-.... ...+
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~-~~~~~l~~~~L~~l~s~l~WI~i~~i~---~~~l 236 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ-GASSSLIVATLESLLRYLHWIPYRYIY---ETNI 236 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTTSCTHHHH---SSSH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCCHHHhc---chhH
Confidence 988888741 12221 23567777777777764 457788899999999988876532210 0235
Q ss_pred HHHHH-HhhcCCCHHHHHHHHHHHHHHHHH--------hHHhhHhhHH--------------------------------
Q 002876 221 MRVVC-EATLSPEVKIRQAAFECLVAISST--------YYEKLAPYIQ-------------------------------- 259 (872)
Q Consensus 221 l~~l~-~~~~~~~~~~r~~~~~~l~~l~~~--------~~~~~~~~~~-------------------------------- 259 (872)
++.++ ..+ ++++.|..|++||..++.. +.+.+...++
T Consensus 237 l~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~ 314 (1023)
T 4hat_C 237 LELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFL 314 (1023)
T ss_dssp HHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHH
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHH
Confidence 55555 544 2456777777777776652 1101110000
Q ss_pred -------------------------HHH----HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCch
Q 002876 260 -------------------------DIF----NITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPC 310 (872)
Q Consensus 260 -------------------------~l~----~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (872)
.++ ..++.....++.++...++++|..+++.. |. ++ .+
T Consensus 315 ~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l------~~---e~----~~ 381 (1023)
T 4hat_C 315 QDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADL------FY---EP----LK 381 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH------TT---ST----TT
T ss_pred HHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH------Hh---ch----HH
Confidence 111 11111112344556677888888887632 11 00 12
Q ss_pred HhHHHhhhhhHHHHHHHHHhcccCCc--ccCCccc-----------hHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhc
Q 002876 311 FYFIKHALPVLVPLLLETLLKQEEDQ--DQDEGAW-----------NIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT 377 (872)
Q Consensus 311 ~~~~~~~l~~l~~~l~~~l~~~~~d~--~~~~~~~-----------~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~ 377 (872)
....++++..+++.++..+.+.++.. +++++.| +..+...++|..++...+.++++.+.+.+.+.+.
T Consensus 382 ~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~ 461 (1023)
T 4hat_C 382 KHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1023)
T ss_dssp GGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 34567888899999999988765320 0111112 2222334888888888888888889999888776
Q ss_pred C--cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhcc-----CCcHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 002876 378 K--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-----DPNNHVKDTTAWTLGRMFEFLHGSTLETPI 450 (872)
Q Consensus 378 ~--~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
+ .+|..|+|+++++|+++++..++...++++.+++.++..+ . |+...||.+++|++|++++++.
T Consensus 462 ~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~-~~~~~~d~k~~v~~t~~~~lGry~~wl~-------- 532 (1023)
T 4hat_C 462 GSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC-VKKRGKDNKAVVASDIMYVVGQYPRFLK-------- 532 (1023)
T ss_dssp STTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHHHHTCHHHHH--------
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh-hccccCcchHHHHHHHHHHHHHHHHHHh--------
Confidence 5 5799999999999999998865557788999999999887 5 4778899999999999999985
Q ss_pred cCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCC--CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHH
Q 002876 451 INQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI--SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAA 527 (872)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~--~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~ 527 (872)
.+..+++++++.+++++.+ +++|+..||+++.++|+.|.... ..+....||++.+++.+.....+.+ +.-+..+
T Consensus 533 ~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~---~~~~~~l 609 (1023)
T 4hat_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ---PQQVHTF 609 (1023)
T ss_dssp HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC---HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC---HHHHHHH
Confidence 3578999999999999975 68999999999999999875421 2345668999999999999887654 4445689
Q ss_pred HHHHHHHHHccccC--cHHHHHHHHHHHHHHHHHHHhhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHh
Q 002876 528 YETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSS---DEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF 602 (872)
Q Consensus 528 ~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 602 (872)
+++++.+++..+.. ...++..+++.+...|..........+ .|++.. .....++++++.++..+|.. +
T Consensus 610 yeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~-~~l~~il~~~~~v~~~lg~~------f 682 (1023)
T 4hat_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV-KIIANIIKTNVAVCTSMGAD------F 682 (1023)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHH-HHHHHHHHHHHHHHHHHGGG------G
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHH-HHHHHHHHHHHHHHHHhcHH------H
Confidence 99999999999853 566889999999999988764211111 112222 22346788999999999987 8
Q ss_pred hHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 603 MQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 603 ~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
.+++..+++.++++.+.-+. .+...+...|....+. | ..+.++ .+++..+.++...+....
T Consensus 683 ~~~~~~i~~~~l~~y~~~s~--------~i~~~~~~~g~~~~~~-----~-~~r~~r-----~ik~~il~l~~~~i~~~~ 743 (1023)
T 4hat_C 683 YPQLGHIYYNMLQLYRAVSS--------MISAQVAAEGLIATKT-----P-KVRGLR-----TIKKEILKLVETYISKAR 743 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHCGGGGGS-----H-HHHHHH-----HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHhCCchhhcc-----H-HHHHHH-----HHHHHHHHHHHHHHhcCC
Confidence 89999999998876664322 1222222223221110 0 111111 244455555555554442
Q ss_pred c--c-ccccHHHHHHHHHHHccCCCCCCCCc-hhHHHHHHHHHHHhccchHHhHHHHHHHHHHH-HhhccCCCCCC-ccH
Q 002876 683 D--K-ILPYCDGIMTQLLKDLSSNQLHRSVK-PPIFSCFGDIALAIGENFEKYLMYAMPMLQSA-AELSVHTSGVD-DDM 756 (872)
Q Consensus 683 ~--~-~~~~~~~i~~~l~~~l~~~~~~~~v~-~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~-l~~~~~~~~~d-~~~ 756 (872)
+ . ...+++.+++.++.-+.+. .+..| ..++.+.+.++..+|..+.+.++.++..+... ++.-.+ +.++ +|.
T Consensus 744 ~~~~~~~~~~~~l~~~vl~dY~~~--~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~-~~~~~Pe~ 820 (1023)
T 4hat_C 744 NLDDVVKVLVEPLLNAVLEDYMNN--VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK-DFTEYPEH 820 (1023)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHS--CGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS-CSSSSHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHhC--ChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-ccccChHH
Confidence 1 0 1223556666666655554 34444 56889999999999999899999888888753 222211 1111 111
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 002876 757 -TEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 757 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g 827 (872)
.++..-++.-.-.|+..++.. .+ +.+..+++.+.-.++. .++++-..++.++.++...+.
T Consensus 821 r~~ff~ll~~~~~~~f~~~~~~-----~~----~~~~~~~~~~~~a~~h--~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 821 RVEFYKLLKVINEKSFAAFLEL-----PP----AAFKLFVDAICWAFKH--NNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHHHHHHHHHHHHCTHHHHTS-----CH----HHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHcC-----CH----HHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHH
Confidence 122222233233333333321 11 2445555555555553 578888888888888877665
No 11
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=6.9e-38 Score=364.66 Aligned_cols=733 Identities=11% Similarity=0.089 Sum_probs=495.1
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCC-ChhHHHHHHHHHhcccccchhhhHHHhhh
Q 002876 4 EVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEK-PVESRKLAGLILKNALDAKEQHRKFELVQ 80 (872)
Q Consensus 4 ~l~~~l~~~~s~--~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~-~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
++.++++.+++| |++.|++|+++|++++++ |++|..+..++.++.. +.++|++|+++|++.++
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~------------ 72 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRSS--STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR------------ 72 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH------------
Confidence 688899888887 689999999999999998 8999999999987443 89999999999999885
Q ss_pred hccCCChH----HHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCCh-hHHHH
Q 002876 81 RWLSLDSS----VKAQIKSFILKTLSS-----PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQA 150 (872)
Q Consensus 81 ~~~~l~~~----~~~~i~~~ll~~l~~-----~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~r~~ 150 (872)
.++++ .+..+|+.++..+.. ....+|++++.+++.++.+++| ..||++++.+++.+.+++. .....
T Consensus 73 ---~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~ 148 (980)
T 3ibv_A 73 ---EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNF 148 (980)
T ss_dssp ---HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHH
T ss_pred ---hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHH
Confidence 36788 899999999998763 3578999999999999999999 7999999999999976544 34455
Q ss_pred HHHHHHHhhhhccccccc-----------------hhhHHHHHHHHHhcccC--CCCCHHHHHHHHHHHHHhHhhchhhc
Q 002876 151 TLETLGYICEEVSSDAVE-----------------QDHVNKILTAVVQGMNA--SESNNDVRLAATRALYNALGFAQANF 211 (872)
Q Consensus 151 al~~l~~i~~~~~~~~l~-----------------~~~~~~i~~~l~~~l~~--~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (872)
.++++..+.+++....+. ...++.+++.+.+.+.. ...++.++..+++|++.++.+++-..
T Consensus 149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~ 228 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININL 228 (980)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHh
Confidence 667777666765211110 01234445555544431 03578899999999999998765432
Q ss_pred cChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH----------------------------H-----------
Q 002876 212 SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY----------------------------E----------- 252 (872)
Q Consensus 212 ~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----------------------------~----------- 252 (872)
.. .+.+++.++..+.+ +++|..|++||..++.... +
T Consensus 229 i~---~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~ 303 (980)
T 3ibv_A 229 IV---NEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINA 303 (980)
T ss_dssp HH---CHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHH
T ss_pred hh---cchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 21 14567777776643 6677777777766553211 0
Q ss_pred ---------------------hhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchH
Q 002876 253 ---------------------KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCF 311 (872)
Q Consensus 253 ---------------------~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (872)
...+++..+++.++..+.++++++...+++||..+.......... . +..
T Consensus 304 ~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~--------~--~~~ 373 (980)
T 3ibv_A 304 QGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSS--------K--ELS 373 (980)
T ss_dssp HHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTS--------C--CCC
T ss_pred HHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccc--------c--ccc
Confidence 001334456777777777788888889999999887653221100 0 012
Q ss_pred hHHHhhhhhHHHHHHHHHhcccCCcc------cCCcc-chHhHHHHHHHHHHHHHcCCcchh----chHHHHHhhhc---
Q 002876 312 YFIKHALPVLVPLLLETLLKQEEDQD------QDEGA-WNIAMAGGTCLGLVARTVGDDIVP----LVMPFVEENIT--- 377 (872)
Q Consensus 312 ~~~~~~l~~l~~~l~~~l~~~~~d~~------~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~----~l~~~l~~~~~--- 377 (872)
...+++++.+++.++..+.+.++++. +|++. -..|+.....++.++...++.+++ .+.+.+.+.+.
T Consensus 374 ~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~ 453 (980)
T 3ibv_A 374 ASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSP 453 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC
Confidence 45678888999999999887544221 11112 256777664444444444556666 66666666653
Q ss_pred CcchhhhHHHHHHHHHhhCCCCCC-----cchHHHHHHHHHHHHHhcc-----CCcHHHHHHHHHHHHHhhhhccCCCCC
Q 002876 378 KQEWRQREAATYAFGSILEGPSPE-----KLVPLVNIALNFMLTALMQ-----DPNNHVKDTTAWTLGRMFEFLHGSTLE 447 (872)
Q Consensus 378 ~~~~~~r~aal~~l~~l~~~~~~~-----~~~~~~~~i~~~l~~~l~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
+.+|+.+|+++++++.+++++... ...++++.+++.+...+ + ++||.||.++++++|++++++.
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll-~s~i~~~~hp~V~~~~~~~l~rys~~~~----- 527 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT-TSQVCRHPHPLVQLLYMEILVRYASFFD----- 527 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH-HSSTTTCCCHHHHHHHHHHHHHTGGGGG-----
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHHHHHHHHh-----
Confidence 456999999999999999987421 11234456667776665 4 8999999999999999999985
Q ss_pred CcccCccchHHHHHHHHH--hccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCC---c-hh
Q 002876 448 TPIINQGNCQQIISVLLQ--SMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED---A-GE 520 (872)
Q Consensus 448 ~~~~~~~~~~~il~~l~~--~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~---~-~~ 520 (872)
.++++++.+++.++. ++.+ +++|+.+|+.++.+||+.+ +..+.||++.|++.+...+.... . .+
T Consensus 528 ---~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~------~~~L~~~~~~il~~l~~lL~~~~~~~~~~~ 598 (980)
T 3ibv_A 528 ---YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI------KKQVVNYTESSLAMLGDLLNISVSPVTDMD 598 (980)
T ss_dssp ---TCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT------TTTCSSSHHHHHHHTTGGGCCCCCCCCC--
T ss_pred ---cCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh------hHHhhhHHHHHHHHHHHhhcCcCCCCCccc
Confidence 356899999999999 8876 6899999999999999987 56788999999999988776311 0 00
Q ss_pred --------------hhhHHHHHHHHHHHHHcccc---CcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 002876 521 --------------SRLRTAAYETLNEVVRCSTD---ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCG 583 (872)
Q Consensus 521 --------------~~v~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (872)
.+-+...+++++.++...+. ....++..+++++++.+...+.....++++.- .....+.
T Consensus 599 ~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~----~i~~~i~ 674 (980)
T 3ibv_A 599 APVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENII----SVYCSLM 674 (980)
T ss_dssp CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHH----HHHHHHH
T ss_pred ccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHH----HHHHHHH
Confidence 11245689999999988653 46778999999999999887653221111111 1123455
Q ss_pred HHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcC-CC
Q 002876 584 CLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQN-FE 662 (872)
Q Consensus 584 ~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~ 662 (872)
+++.+...+.... ... ..+...+.++++.+...++. ..
T Consensus 675 al~~lakgf~~~~-------------------------~~~----------------~p~~~~f~~~~~~il~~l~~~~~ 713 (980)
T 3ibv_A 675 AIGNFAKGFPARG-------------------------SEE----------------VAWLASFNKASDEIFLILDRMGF 713 (980)
T ss_dssp HHHHHHHTSCSCC--------------------------CC----------------CSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhccCCccc-------------------------CCC----------------CcHHHHHHHHHHHHHHHHHhcCC
Confidence 5566555443210 000 00222233344444333331 12
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHH
Q 002876 663 DYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSA 742 (872)
Q Consensus 663 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~ 742 (872)
+..+|..+..++..++..+|..+.|+++.+++.++..++..+ -...++.++.++..+|.++.++++.+++.+...
T Consensus 714 ~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e-----~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~ 788 (980)
T 3ibv_A 714 NEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE-----LVDVLSFISQLIHIYKDNMMEITNRMLPTLLMR 788 (980)
T ss_dssp SHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT-----HHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888888999998888886554332 256788999999999988888888887777664
Q ss_pred HhhccC-CCCCCccHHHHHHHHHHHHHHHHHHHhhcc-cCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002876 743 AELSVH-TSGVDDDMTEYTNSLRNGILEAFSGIFQGF-KGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLG 820 (872)
Q Consensus 743 l~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~ 820 (872)
.-.--. +..++ |...-...+|++-+..+..++..- ..-...+.-+++++.++..+.....+ -.+...++.|+.++.
T Consensus 789 if~~l~~~~~~t-d~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~-~~d~~~~K~a~~~l~ 866 (980)
T 3ibv_A 789 IFSSLSAAPQGT-DDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANL-VGEPATQKSSIALVS 866 (980)
T ss_dssp HHHHTTC----C-CHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred HHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHH
Confidence 322111 11222 222234567888777777777642 11111122356788888877765554 357789999999999
Q ss_pred HHHHHhcCC-----ccccccC
Q 002876 821 DLADTLGSN-----AGPLIQQ 836 (872)
Q Consensus 821 ~i~~~~g~~-----~~~~~~~ 836 (872)
.++..+|+. |..|+.+
T Consensus 867 ~~v~~~~~~~~~~gf~~f~~~ 887 (980)
T 3ibv_A 867 KMVSLWGGKDGIAGFENFTLS 887 (980)
T ss_dssp HHHHC-------CCHHHHHHH
T ss_pred HHHHHHCCCCcchHHHHHHHH
Confidence 999999742 4555554
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=5.2e-39 Score=394.78 Aligned_cols=661 Identities=15% Similarity=0.176 Sum_probs=512.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--------hhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhh
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~--------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (872)
.++.++|+.+.|+|+++|.+|...|.+.-+.+ .+.++..|++.+.+ .++.+|..|+..|.+.+.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~------ 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVS------ 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH------
Confidence 57999999999999999999999998764432 23577778888764 489999999999988664
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC--------CchhHHHHHHHhhc-CCCh
Q 002876 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK--------QWPELIGALLSNIH-QLPP 145 (872)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~--------~~~~l~~~l~~~l~-~~~~ 145 (872)
.++++....+++.++..+.++++.+|..++.+++.++....+.. .|++++|.+.+.+. ++++
T Consensus 78 ---------~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~ 148 (1230)
T 1u6g_C 78 ---------KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV 148 (1230)
T ss_dssp ---------TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH
T ss_pred ---------hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch
Confidence 24567788899999999999999999999999999998764421 49999999999998 4788
Q ss_pred hHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHH
Q 002876 146 HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVC 225 (872)
Q Consensus 146 ~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~ 225 (872)
.+|.+|+.++..+++.. ++.+ .++.+.+++.+...+. ++++.+|..|+.+++.++...+..+. +.+++.+.
T Consensus 149 ~~~~~al~~l~~~~~~~-~~~l-~~~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~-----~~~l~~l~ 219 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQ-GGLL-VNFHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEHLL 219 (1230)
T ss_dssp HHHHHHHHHHHHHHHHT-CSSC-TTTHHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----C-----TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-HhHH-HHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHH
Confidence 99999999999999877 5556 5788999999999998 78899999999999998876654332 22344443
Q ss_pred Hhhc-CCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002876 226 EATL-SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSG 304 (872)
Q Consensus 226 ~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~ 304 (872)
..+. +.++.+|..+++++..++...++.+.+|++.+++.++..+.+.++++|..+++++..++...
T Consensus 220 ~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~------------- 286 (1230)
T 1u6g_C 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC------------- 286 (1230)
T ss_dssp HHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT-------------
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC-------------
Confidence 3332 23357888999999999999888889999999999999999988999999999988887621
Q ss_pred CCCCchHhHHHhhhhhHHHHHHHHHhccc--------------------CCc--------ccCCccchHhHHHHHHHHHH
Q 002876 305 DSDIPCFYFIKHALPVLVPLLLETLLKQE--------------------EDQ--------DQDEGAWNIAMAGGTCLGLV 356 (872)
Q Consensus 305 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~--------------------~d~--------~~~~~~~~~r~~a~~~l~~l 356 (872)
..-+.++++.++|.++..+...+ +++ ++++..|.+|.+|..+++.+
T Consensus 287 ------~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l 360 (1230)
T 1u6g_C 287 ------PKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360 (1230)
T ss_dssp ------TCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred ------hHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHH
Confidence 12235677888888877664210 000 01123589999999999999
Q ss_pred HHHcCC---cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCC------------------CCcchHHHHHHHHHHH
Q 002876 357 ARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS------------------PEKLVPLVNIALNFML 415 (872)
Q Consensus 357 ~~~~~~---~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~------------------~~~~~~~~~~i~~~l~ 415 (872)
+...|+ ..++.++|.+...+.+.+..+|.+++.+++.++...+ ...+..+++.+++.+.
T Consensus 361 ~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 440 (1230)
T 1u6g_C 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440 (1230)
T ss_dssp HTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHH
Confidence 987664 3456778888888888889999999988887765321 1223456678888888
Q ss_pred HHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHhcccCC
Q 002876 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDV---PNVAEKACGALYFLAQGFEDAI 492 (872)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~---~~v~~~a~~al~~l~~~~~~~~ 492 (872)
..+ +|+++.+|.+++.+++.++...+. ....+++.+++.++..+.|. ..++..++.++..+++..+
T Consensus 441 ~~l-~~~~~~vr~~~~~~L~~l~~~~~~-------~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~--- 509 (1230)
T 1u6g_C 441 KQM-KEKSVKTRQCCFNMLTELVNVLPG-------ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS--- 509 (1230)
T ss_dssp HHT-TCSCHHHHHHHHHHHHHHHHHSTT-------TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC---
T ss_pred HHh-ccCCHHHHHHHHHHHHHHHHHchh-------hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC---
Confidence 889 999999999999999999998642 23568999999999999974 3889999999999887653
Q ss_pred CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc-------CcHHHHHHHHHHHHHHHHHHHhhhc
Q 002876 493 SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-------ETAPMVMQLVPLIMMELHQTLEAQK 565 (872)
Q Consensus 493 ~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (872)
+..+.||++.+++.++..+.+. ++.++..++.+++.+++..+. .+.+|+..++|.++..+...
T Consensus 510 --~~~~~~~l~~llp~L~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~----- 579 (1230)
T 1u6g_C 510 --PQVFHPHVQALVPPVVACVGDP---FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA----- 579 (1230)
T ss_dssp --GGGGHHHHTTTHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS-----
T ss_pred --HHHHHhHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc-----
Confidence 4557889999999999988775 467888899999999988765 67899999999998877321
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh-hhhH
Q 002876 566 LSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-QDFL 644 (872)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~ 644 (872)
+.++ .+|..++.+++.++...|.. +.++++.+++.+.+.+.++ ..|..++.+++.++...+ ..+.
T Consensus 580 --d~~~----~vr~~a~~~lg~L~~~~g~~------~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~ 645 (1230)
T 1u6g_C 580 --DIDQ----EVKERAISCMGQIICNLGDN------LGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLR 645 (1230)
T ss_dssp --SSCH----HHHHHHHHHHHHHHHHTGGG------CCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCH
T ss_pred --CCCH----HHHHHHHHHHHHHHHHhCch------hhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchH
Confidence 1222 46677889999999998876 7788899999888887743 467788888888876433 3677
Q ss_pred hhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHH
Q 002876 645 KYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKIL-PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALA 723 (872)
Q Consensus 645 ~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~ 723 (872)
++++.++|.+...+.+. +..+|..++.+++.++...+..+. +++..++..+..++.++ +..++..++.+++.++..
T Consensus 646 ~~~~~i~~~L~~~l~~~-~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~--D~~~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 646 PVLGEGVPILASFLRKN-QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES--DMHVSQMAISFLTTLAKV 722 (1230)
T ss_dssp HHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTT--CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcc--hHHHHHHHHHHHHHHHHh
Confidence 99999999999999854 568999999999999999875542 22222333323333333 556778899999999988
Q ss_pred hccchHHhHHHHHHHHHHHHhhc
Q 002876 724 IGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 724 ~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
.++.+.++.+.++|.+...+...
T Consensus 723 ~~~~~~~~~~~~l~~~~~~l~~~ 745 (1230)
T 1u6g_C 723 YPSSLSKISGSILNELIGLVRSP 745 (1230)
T ss_dssp CGGGGGGTTTTTHHHHHHHHTCT
T ss_pred CchhHHHhHHhHHHHHHHHHcCc
Confidence 88777778888888888877543
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.7e-37 Score=370.74 Aligned_cols=709 Identities=13% Similarity=0.137 Sum_probs=532.3
Q ss_pred CChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHhh-----
Q 002876 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP--AHDARSTASQVVAKVAGIE----- 123 (872)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~l~~i~~~~----- 123 (872)
.+.++|+.|...|++.-. +....+...+++.+.++ +..+|..++.++.......
T Consensus 13 ~d~~~r~~A~~~L~~~~~-------------------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (876)
T 1qgr_A 13 PDRLELEAAQKFLERAAV-------------------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp SCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-------------------cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhH
Confidence 478999999999977321 12345666788887764 5899999999999876421
Q ss_pred --cCCCCchhH--------HHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCC--CHH
Q 002876 124 --LPHKQWPEL--------IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASES--NND 191 (872)
Q Consensus 124 --~~~~~~~~l--------~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~--~~~ 191 (872)
.+ ..|+.+ .+.+++.+.++++.+ ..+..+++.++....+ ..+++.+++.+.+.+. ++ ++.
T Consensus 74 ~~~~-~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~----~~~w~~ll~~l~~~l~--~~~~~~~ 145 (876)
T 1qgr_A 74 AQYQ-QRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP----VNQWPELIPQLVANVT--NPNSTEH 145 (876)
T ss_dssp HHHH-HHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG----GTCCTTHHHHHHHHHH--CTTCCHH
T ss_pred HHHH-hhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc----ccccHHHHHHHHHHHh--CCCCCHH
Confidence 11 245443 334788888877777 8899999988876422 2457788888888888 56 899
Q ss_pred HHHHHHHHHHHhHhhc-hhhccChhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhHHhhHhhH--HHHHHHHH
Q 002876 192 VRLAATRALYNALGFA-QANFSNDMERDYIMRVVCEATLSP--EVKIRQAAFECLVAISSTYYEKLAPYI--QDIFNITA 266 (872)
Q Consensus 192 vr~~al~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~~--~~l~~~~~ 266 (872)
+|..+++++..++... ++.+. ...+.+++.+...+.++ ++.+|..+++++..++...+..+.... +.+++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~--~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQ--DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHG--GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHhhHH--hHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999988654 22222 22367788888888776 689999999999998875443332211 24677777
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhh-hHHHHHHHHHhcccCCcccCCccchH
Q 002876 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALP-VLVPLLLETLLKQEEDQDQDEGAWNI 345 (872)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~~~~~~~~ 345 (872)
..+.+.+++++..+++++..+++.. +..+.+++. .+++.++..+.. ++ ..+
T Consensus 224 ~~~~~~~~~vr~~a~~~l~~l~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~--~~-------~~v 275 (876)
T 1qgr_A 224 EATQCPDTRVRVAALQNLVKIMSLY-------------------YQYMETYMGPALFAITIEAMKS--DI-------DEV 275 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHS-------------------GGGCHHHHTTTHHHHHHHHHTC--SS-------HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHhcC--Cc-------hHH
Confidence 7777888899999999999988742 133456666 788888776532 11 267
Q ss_pred hHHHHHHHHHHHHHc-------------C----C---c----chhchHHHHHhhhc-------CcchhhhHHHHHHHHHh
Q 002876 346 AMAGGTCLGLVARTV-------------G----D---D----IVPLVMPFVEENIT-------KQEWRQREAATYAFGSI 394 (872)
Q Consensus 346 r~~a~~~l~~l~~~~-------------~----~---~----~~~~l~~~l~~~~~-------~~~~~~r~aal~~l~~l 394 (872)
|..+.+++..++... + . . .++.+++.+.+.+. +++|.+|.++..+++.+
T Consensus 276 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 777777777776532 0 0 1 12344554444442 45799999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhH
Q 002876 395 LEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNV 473 (872)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v 473 (872)
+.... + ..++.+++.+...+ .|++|++|.+++++++.+++... +.....+++.+++.++..+.| ++.|
T Consensus 356 ~~~~~-~---~~~~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~------~~~~~~~~~~~l~~l~~~l~d~~~~v 424 (876)
T 1qgr_A 356 ATCCE-D---DIVPHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPE------PSQLKPLVIQAMPTLIELMKDPSVVV 424 (876)
T ss_dssp HHHHG-G---GGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSC------HHHHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHCc-H---hhHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 88763 2 34678889999999 99999999999999999998653 112235788899999999987 6899
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccc--------------
Q 002876 474 AEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST-------------- 539 (872)
Q Consensus 474 ~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~-------------- 539 (872)
|..|+++++.+++.+... ....++++.+++.++..+.+ ++.++..++.+++.++...+
T Consensus 425 r~~a~~~l~~~~~~~~~~----~~~~~~l~~~l~~l~~~l~~----~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 496 (876)
T 1qgr_A 425 RDTAAWTVGRICELLPEA----AINDVYLAPLLQCLIEGLSA----EPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496 (876)
T ss_dssp HHHHHHHHHHHHHHCGGG----TSSTTTHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred HHHHHHHHHHHHHhCchh----cccHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 999999999999986431 12468999999999999876 36789999999999998765
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc
Q 002876 540 DETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI 619 (872)
Q Consensus 540 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~ 619 (872)
..+.+|+..++|.++..+.... .+++ .++..++++++.++...+.. +.++...+++.+++.+..
T Consensus 497 ~~l~~~~~~il~~L~~~l~~~~------~~~~----~~r~~~~~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~ 560 (876)
T 1qgr_A 497 YCLSSSFELIVQKLLETTDRPD------GHQN----NLRSSAYESLMEIVKNSAKD------CYPAVQKTTLVIMERLQQ 560 (876)
T ss_dssp CSSTTTHHHHHHHHHHHTTSCS------SCST----THHHHHHHHHHHHHHTCCST------THHHHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHhCcC------cchh----hHHHHHHHHHHHHHHHCchh------hHHHHHHHHHHHHHHHHH
Confidence 3467888888888887764310 0111 35566899999999988865 778888888888877764
Q ss_pred c-----------c----cchhhHHHHHHHHHHHHhh-hhhHhhhHHHHHHHHhhhcCCCh-hhHHHHHHHHHHHHHHHHh
Q 002876 620 R-----------S----ATAHEEAMLAIGALAYATG-QDFLKYMPEFYKYVEMGLQNFED-YQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 620 ~-----------~----~~~~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~ 682 (872)
. + ..++..++.+++.++..+| ..+.||++.++|.+...+++..+ ..++..++.+++.++..++
T Consensus 561 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~ 640 (876)
T 1qgr_A 561 VLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp HHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence 1 1 3356788899999999999 89999999999999999986532 3688999999999999999
Q ss_pred ccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHH
Q 002876 683 DKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNS 762 (872)
Q Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~ 762 (872)
..+.||++.+++.+...+.+.. +..+|..++.+++.++...|+.+.+|++.+++.+.+.++... .+ ..
T Consensus 641 ~~~~~~~~~~~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~----~~-------~~ 708 (876)
T 1qgr_A 641 GEFLKYMEAFKPFLGIGLKNYA-EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN----VH-------RS 708 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT----SC-------GG
T ss_pred hhHHHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc----cc-------HH
Confidence 9999999999999999998753 567899999999999999999999999999999999986520 01 24
Q ss_pred HHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCC--CC-------HHHHHHHHHHHHHHHHHhcC-----
Q 002876 763 LRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKD--MD-------DVVTKTAIGVLGDLADTLGS----- 828 (872)
Q Consensus 763 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~-------~~v~~~a~~~l~~i~~~~g~----- 828 (872)
+|..++.+++.+...+ +..+.+|++.+++.+...+..+. .+ .++|..++.+++.++..+|+
T Consensus 709 ~~~~~~~~l~~i~~~~-----g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 709 VKPQILSVFGDIALAI-----GGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp GHHHHHHHHHHHHHHH-----GGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred hhHHHHHHHHHHHHHh-----chhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 6777888888887763 34588999999999988876421 12 27899999999999999875
Q ss_pred -----CccccccCchHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHhc
Q 002876 829 -----NAGPLIQQSVSSKDFLNECLSSD--DHMIKESAEWAKLAISKAIS 871 (872)
Q Consensus 829 -----~~~~~~~~~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 871 (872)
.+.+|++. +..++.....+. ++.+|..|..+.+.+.+..|
T Consensus 784 ~~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~ 830 (876)
T 1qgr_A 784 HPDVMLVQPRVEF---ILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFG 830 (876)
T ss_dssp CGGGGGSGGGHHH---HHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 35666665 446666665555 78999999999999988765
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=7.6e-36 Score=355.68 Aligned_cols=719 Identities=14% Similarity=0.154 Sum_probs=548.1
Q ss_pred CCHHHHHHHHHHHHHHHhc--------------------ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhh
Q 002876 15 VDGTVRKQAEESLKQYQEQ--------------------NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (872)
Q Consensus 15 ~~~~~r~~a~~~L~~~~~~--------------------~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (872)
.+.++|..|-..|+..-+. .....-..|++.+.+ .+..+|..++..+.......|+.
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~--~~~~vr~~~~~~l~~i~~~~~p~- 129 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS--IEPRIANAAAQLIAAIADIELPH- 129 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHGGG-
T ss_pred CChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHHHHHhhCcc-
Confidence 3678999999888764211 112344456666665 36889999999998877654321
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhhcCC-----CCchhHHHHHHHhhcCC--Chh
Q 002876 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSP-AHDARSTASQVVAKVAGIELPH-----KQWPELIGALLSNIHQL--PPH 146 (872)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~-----~~~~~l~~~l~~~l~~~--~~~ 146 (872)
..|. .+.+.+++.+.++ ++.+|..+..++..++....+. ...+.+++.+.+.+.++ ++.
T Consensus 130 -----~~w~--------~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 196 (861)
T 2bpt_A 130 -----GAWP--------ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKA 196 (861)
T ss_dssp -----TCCH--------HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred -----cccH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 2452 3566788888888 8999999999999999754331 13456788888888887 789
Q ss_pred HHHHHHHHHHHhhhhccccccc-hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHH-HHHHHH
Q 002876 147 TKQATLETLGYICEEVSSDAVE-QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERD-YIMRVV 224 (872)
Q Consensus 147 ~r~~al~~l~~i~~~~~~~~l~-~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~-~il~~l 224 (872)
+|..+++++..++... .+.+. ......+++.+...+. +.++.+|..+++++..++...++.+.. ... .+++.+
T Consensus 197 vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~--~l~~~l~~~~ 271 (861)
T 2bpt_A 197 VRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKP--YMEQALYALT 271 (861)
T ss_dssp HHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHH--HHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 9999999999876544 21121 1123457777777776 789999999999999988765544431 223 677777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhH-----------------HhhHhhHHHHHHHHHHHHhcC-------ChhhHHHH
Q 002876 225 CEATLSPEVKIRQAAFECLVAISSTYY-----------------EKLAPYIQDIFNITAKAVRED-------EEPVALQA 280 (872)
Q Consensus 225 ~~~~~~~~~~~r~~~~~~l~~l~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~-------~~~v~~~a 280 (872)
...+.+.++++|..+++.|..++.... ..+.+++..+++.++..+.+. +..+|..+
T Consensus 272 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 778888999999999999999887642 134556678888888887642 23588888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc
Q 002876 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360 (872)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~ 360 (872)
..++..++... -...++.+++.+.+.+.. ..|..|.+|..+++.++...
T Consensus 352 ~~~L~~l~~~~----------------------~~~~~~~l~~~l~~~l~~---------~~~~~r~~a~~~l~~i~~~~ 400 (861)
T 2bpt_A 352 GACLQLFAQNC----------------------GNHILEPVLEFVEQNITA---------DNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHHHH----------------------GGGGHHHHHHHHHHHTTC---------SSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHc----------------------cHhHHHHHHHHHHHHcCC---------CChhHHHHHHHHHHHHHcCC
Confidence 88888887632 133455667777666541 34999999999998887654
Q ss_pred C-C---cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCc-chHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 002876 361 G-D---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK-LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLG 435 (872)
Q Consensus 361 ~-~---~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (872)
+ + ..++.+++.+...+.++++.+|.+++.+++.++....... ..++++.+++.++..+ +|+ +.||.+++++++
T Consensus 401 ~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~ 478 (861)
T 2bpt_A 401 DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTII 478 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHH
Confidence 3 2 2345677888888889999999999999999887653211 2456888999999999 887 999999999999
Q ss_pred HhhhhccCCCCCCcccCccchHHHHHHHHHhcc--C-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHh
Q 002876 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMK--D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTV 512 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~ 512 (872)
.+++..... .+.....|++.+++.+++.+. | ++.+|..++.+++.++... +....+|++.+++.++..
T Consensus 479 ~l~~~~~~~---~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~------~~~~~~~~~~l~~~l~~~ 549 (861)
T 2bpt_A 479 NLVEQLAEA---TPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA------TDTVAETSASISTFVMDK 549 (861)
T ss_dssp HHHHHHSSS---SSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC------CGGGHHHHHHHHHHHHHH
T ss_pred HHHHhcccc---cchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc------chhhHHHHHHHHHHHHHH
Confidence 999976410 012345788999999999997 3 3789999999999999876 345678888888888877
Q ss_pred hccC--------C----chhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 002876 513 THRE--------D----AGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGL 580 (872)
Q Consensus 513 l~~~--------~----~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 580 (872)
+.+. . .....++..++.+++.+++..|..+.++...+++.++..+... ..+ .++..
T Consensus 550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~-----~v~~~ 617 (861)
T 2bpt_A 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK-------DSA-----FIEDD 617 (861)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST-------TGG-----GTHHH
T ss_pred HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC-------CCC-----cHHHH
Confidence 6532 0 1134577889999999999999888899999999988877542 110 23455
Q ss_pred HHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcC
Q 002876 581 LCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQN 660 (872)
Q Consensus 581 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 660 (872)
++.+++.++...+.. +.+|.+.+++.+...+++++..+|..++.+++.++..+|..+.+|++.++|.+...+++
T Consensus 618 ~~~~l~~l~~~~~~~------~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 691 (861)
T 2bpt_A 618 VFYAISALAASLGKG------FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691 (861)
T ss_dssp HHHHHHHHHHHHGGG------GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCC
Confidence 788889998888876 88999999999999998888889999999999999999999999999999999999986
Q ss_pred CC-hhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCC---------CCCCchhHHHHHHHHHHHhc---cc
Q 002876 661 FE-DYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQL---------HRSVKPPIFSCFGDIALAIG---EN 727 (872)
Q Consensus 661 ~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~---------~~~v~~~~~~~l~~i~~~~~---~~ 727 (872)
.+ +.++|..++.+++.++..+++.+.||++.+++.++..+..... ...+|..++.+++.++..+| ..
T Consensus 692 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~ 771 (861)
T 2bpt_A 692 PNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEA 771 (861)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 52 4689999999999999999999999999999999998875310 02478899999999999988 56
Q ss_pred hHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchH-HHHHHHHHHhcC-C
Q 002876 728 FEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAP-HILQFLDSLYME-K 805 (872)
Q Consensus 728 ~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~l~~~l~~-~ 805 (872)
+.+|++.+++.+...+.+. + .+|...+|..++.++..+...++ +..+.+|+. .+++.+.+.+.. +
T Consensus 772 ~~~~~~~i~~~l~~~~~d~------~---~~~~~~vr~~a~~~l~~l~~~~~----g~~~~~~~~~~~~~~ll~~l~~~~ 838 (861)
T 2bpt_A 772 LFPYVGTIFQFIAQVAEDP------Q---LYSEDATSRAAVGLIGDIAAMFP----DGSIKQFYGQDWVIDYIKRTRSGQ 838 (861)
T ss_dssp HGGGHHHHHHHHHHHHHCH------H---HHTSHHHHHHHHHHHHHHHHHCT----TSTTGGGTTCHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHcCc------c---cCCcHHHHHHHHHHHHHHHHHcC----CchHHHHHhcHHHHHHHHHHhhcc
Confidence 8899999999999887431 0 01135799999999999998752 345788998 889988877773 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc
Q 002876 806 DMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 806 ~~~~~v~~~a~~~l~~i~~~~g 827 (872)
+.+..++..+-.+++.+.+.++
T Consensus 839 ~~~~~~~~~~~wa~~~~~~~~~ 860 (861)
T 2bpt_A 839 LFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhC
Confidence 5678899999999999987653
No 15
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=2.1e-34 Score=331.98 Aligned_cols=748 Identities=15% Similarity=0.203 Sum_probs=491.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhcc
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWL 83 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~ 83 (872)
++.+++..+++|+++.|++|+++|++++++ |++|..+..++.+ +.++++|++|+++|++.+++ .|.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s--p~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~-----------~W~ 94 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH--PDAWTRVDTILEF-SQNMNTKYYGLQILENVIKT-----------RWK 94 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC--SCHHHHHTCC----CCSHHHHHHHHHHHHHHHHH-----------TGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--chHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh-----------hhh
Confidence 578899999999999999999999999988 8999988888866 56899999999999999985 466
Q ss_pred CCChHHHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHH
Q 002876 84 SLDSSVKAQIKSFILKTLSS---------PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLET 154 (872)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~---------~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~ 154 (872)
.++++.+..+|+.+++.+.. .++.++++++.+++.++++++| ..||++++.+++.+++ ++..+..++.+
T Consensus 95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 79999999999999998753 2467889999999999999999 6999999999998864 45677889999
Q ss_pred HHHhhhhccc---cccc-----------hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHH
Q 002876 155 LGYICEEVSS---DAVE-----------QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (872)
Q Consensus 155 l~~i~~~~~~---~~l~-----------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (872)
|..+.+++.. ..+. ...++.+++.+...+.. ..++.+...++++++.++.|++-.... .+.+
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~-~~~~~lv~~~L~~L~~~~sWI~i~~i~---~~~l 248 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN-SQNAPLVHATLETLLRFLNWIPLGYIF---ETKL 248 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTHHHH---SSSH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHhcCHHHhc---cchH
Confidence 9999887511 1011 23456677777776754 567888889999999988876532210 0235
Q ss_pred HHHH-HHhhcCCCHHHHHHHHHHHHHHHHHh----HHhhHhhH-------------------------------------
Q 002876 221 MRVV-CEATLSPEVKIRQAAFECLVAISSTY----YEKLAPYI------------------------------------- 258 (872)
Q Consensus 221 l~~l-~~~~~~~~~~~r~~~~~~l~~l~~~~----~~~~~~~~------------------------------------- 258 (872)
++.+ +..+ ++++.|..|++||..++... .+.+...+
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~ 326 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSL 326 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHH
Confidence 6655 4555 45677888888888877531 11100000
Q ss_pred -----------------------HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCC----C--CCCC-
Q 002876 259 -----------------------QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFS----G--DSDI- 308 (872)
Q Consensus 259 -----------------------~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~----~--~~~~- 308 (872)
...+..++.....++.++...++++|..+.+.-..-. ++..+.. + ....
T Consensus 327 ~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~-~~~~~~~~~~~~~~~~~~~ 405 (1073)
T 3gjx_A 327 FLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRES-PFSTSASPLLSGSQHFDIP 405 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHC-CSCCCCSSCTTSSCCSCSC
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhc-cccccccccccccccccch
Confidence 0011111111123456677888889988887533211 0000000 0 0011
Q ss_pred chHhHHHhhhhhHHHHHHHHHhcccCC----cccCC---------ccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhh
Q 002876 309 PCFYFIKHALPVLVPLLLETLLKQEED----QDQDE---------GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEEN 375 (872)
Q Consensus 309 ~~~~~~~~~l~~l~~~l~~~l~~~~~d----~~~~~---------~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~ 375 (872)
..++...+++..+..++...|.+.+|. .|+++ +.-+.++...++|..++...+......+.+.+.+.
T Consensus 406 ~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~ 485 (1073)
T 3gjx_A 406 PRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQ 485 (1073)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 133445777888888888888765431 11111 11234556677887777666677777888888776
Q ss_pred hcC--cchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCC-----cHHHHHHHHHHHHHhhhhccCCCCCC
Q 002876 376 ITK--QEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP-----NNHVKDTTAWTLGRMFEFLHGSTLET 448 (872)
Q Consensus 376 ~~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
+++ .+|..++++++++|+++....++...++++.+++.++... ..+ .+.++...++++|++.+|+.
T Consensus 486 ~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~-e~~~~kd~k~~vas~i~~vlgrY~~wl~------ 558 (1073)
T 3gjx_A 486 VNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC-EQKRGKDNKAIIASNIMYIVGQYPRFLR------ 558 (1073)
T ss_dssp HTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH-HHSCSHHHHHHHHHHHHHHHHHCHHHHH------
T ss_pred hcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc-ccccccchhHHHHHHHHHHHhhhHHHHH------
Confidence 654 4599999999999999865532335578899999998877 544 45677778899999999985
Q ss_pred cccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCC--CCCCCCchhHHHHHHHHHHhhccCCchhhhhHH
Q 002876 449 PIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAI--SPSSPLTPFFQEIVQALLTVTHREDAGESRLRT 525 (872)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~--~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~ 525 (872)
.+..++..++..+++.+.+ ++.|+..||.++..+|+.|+... .......||+..|++.+.....+.+ ++-..
T Consensus 559 --~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~---~~~~~ 633 (1073)
T 3gjx_A 559 --AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ---PQQVH 633 (1073)
T ss_dssp --HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC---HHHHH
T ss_pred --hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC---HHHHH
Confidence 3678999999999999986 79999999999999999987541 1234567899999999988877764 33345
Q ss_pred HHHHHHHHHHHccccC--cHHHHHHHHHHHHHHHHHHHhhhc---CChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Q 002876 526 AAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQK---LSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (872)
Q Consensus 526 ~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 600 (872)
..+++++.++...|.. ...++..++++..+.|........ ..-.|++...+ ...++++...++..+|..
T Consensus 634 ~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~-l~~il~~n~~v~~~~g~~----- 707 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQ-LGSILKTNVRACKAVGHP----- 707 (1073)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHH-HHHHHHHHHHHHHHHCGG-----
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHH-HHHHHhhhHHHHhhcchh-----
Confidence 8899999999999974 477889999999999988764111 01112332222 345778888899999987
Q ss_pred HhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
+.+++..+++.+++..+.- -..++..+...|...... ...+.++ .+|+..+.++...+.+
T Consensus 708 -f~~~~~~i~~~~l~~y~~~--------s~~i~~~v~~~g~~~~~~------~~~~~~r-----~ik~eil~l~~~~i~~ 767 (1073)
T 3gjx_A 708 -FVIQLGRIYLDMLNVYKCL--------SENISAAIQANGEMVTKQ------PLIRSMR-----TVKRETLKLISGWVSR 767 (1073)
T ss_dssp -GHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCGGGGSS------HHHHHHH-----HHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhCCchhhcc------HHHHHHH-----HHHHHHHHHHHHHHhc
Confidence 8888888888777654421 111222222222211110 0111111 2344444555444433
Q ss_pred Hhcc---ccccHHHHHHHHHHHccCCCCCCCCc-hhHHHHHHHHHHHhccchHHhHHHHHHHHHHH-HhhccCCCCCCcc
Q 002876 681 LEDK---ILPYCDGIMTQLLKDLSSNQLHRSVK-PPIFSCFGDIALAIGENFEKYLMYAMPMLQSA-AELSVHTSGVDDD 755 (872)
Q Consensus 681 ~~~~---~~~~~~~i~~~l~~~l~~~~~~~~v~-~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~-l~~~~~~~~~d~~ 755 (872)
..+. ...+++.+++.++.-..+. .+..| +.++.+++.++..+|..+.+.++.++..+.+. ++.-.+ +.++
T Consensus 768 ~~~~~~v~~~~i~pl~~~vl~dY~~~--~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~-~f~~-- 842 (1073)
T 3gjx_A 768 SNDPQMVAENFVPPLLDAVLIDYQRN--VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK-DFEE-- 842 (1073)
T ss_dssp CSCHHHHHHHTSHHHHHHTHHHHHHS--CGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSS-CSSS--
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHhcC--CcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhC-Cccc--
Confidence 2110 1123455566655555543 33444 46899999999999999999999999888763 222211 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCC---CcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 002876 756 MTEYTNSLRNGILEAFSGIFQGFKGS---PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g 827 (872)
| .+.|..-.+.+..+....-.. ..+ +.+..+++.+.=.++. .++++-..++.++.++...+.
T Consensus 843 ---~-Pe~r~~ff~ll~~~~~~~f~~l~~l~~----~~~~~~i~~i~wa~kh--~~r~i~~~~l~~~~~ll~~~~ 907 (1073)
T 3gjx_A 843 ---Y-PEHRTNFFLLLQAVNSHCFPAFLAIPP----AQFKLVLDSIIWAFKH--TMRNVADTGLQILFTLLQNVA 907 (1073)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHCGGGTTTSCH----HHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHT
T ss_pred ---C-cHHHHHHHHHHHHHHHHHhHHHHcCCH----HHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHHHhh
Confidence 1 233333333344333321100 011 2334455555444443 477888888888888877764
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=4.5e-33 Score=342.08 Aligned_cols=695 Identities=14% Similarity=0.147 Sum_probs=510.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002876 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVA 117 (872)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~ 117 (872)
-+..|+.-+.+ .|..+|+.|..-|.+.+... ...+++.....+...+++.+.++++.+|..++.+++
T Consensus 7 ~l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~-----------~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 7 HISNLLEKMTS--SDKDFRFMATNDLMTELQKD-----------SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp HHHHHHHHTTC--SSHHHHHHHHHHHHHHTSSS-----------CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CCHhHHHHHHHHHHHHHccc-----------ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34445555554 48999999998888877632 223456667788888999999999999999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccc----cchhhHHHHHHHHHhcccCCCCCHHHH
Q 002876 118 KVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDA----VEQDHVNKILTAVVQGMNASESNNDVR 193 (872)
Q Consensus 118 ~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~----l~~~~~~~i~~~l~~~l~~~~~~~~vr 193 (872)
.++....+ ..++.+++.+++.+.++++.+|.++..+++.++....++. +...+.+.++|.+...+.+ ++++.+|
T Consensus 74 ~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~ 151 (1230)
T 1u6g_C 74 PLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQ 151 (1230)
T ss_dssp HHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHH
T ss_pred HHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHH
Confidence 99976533 4678899999999999888999999999999998874321 1145789999999999873 4788999
Q ss_pred HHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcC-
Q 002876 194 LAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED- 272 (872)
Q Consensus 194 ~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~- 272 (872)
..|+.++..++...+..+.. ..+.+++.+...+.++++.+|..++.++..++...++.+ ++.+++.++..+.+.
T Consensus 152 ~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKND 226 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCC
Confidence 99999999988655444432 347788999999999999999999999999998765433 233444454444433
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHH
Q 002876 273 EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTC 352 (872)
Q Consensus 273 ~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~ 352 (872)
+..++..++++|..++...+ ..+.++++.++|.++..+.. + ...+|..+..+
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~-------------------~~~~~~l~~l~~~ll~~l~d--~-------~~~vR~~a~~~ 278 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAG-------------------HRIGEYLEKIIPLVVKFCNV--D-------DDELREYCIQA 278 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSS-------------------GGGTTSCTTHHHHHHHHHSS--C-------CTTTHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhH-------------------HHHHHHHHHHHHHHHHHhcC--C-------CHHHHHHHHHH
Confidence 34678888999998886421 23457788899999988752 1 13678899999
Q ss_pred HHHHHHHcCCcc---hhchHHHHHhhhc-------------------------------------CcchhhhHHHHHHHH
Q 002876 353 LGLVARTVGDDI---VPLVMPFVEENIT-------------------------------------KQEWRQREAATYAFG 392 (872)
Q Consensus 353 l~~l~~~~~~~~---~~~l~~~l~~~~~-------------------------------------~~~~~~r~aal~~l~ 392 (872)
+..++..+++.+ ++.++|.+.+.+. +..|++|.+|+.+++
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence 999999887764 4455555543321 124899999999999
Q ss_pred HhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCC------------CCcccCccchHHHH
Q 002876 393 SILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL------------ETPIINQGNCQQII 460 (872)
Q Consensus 393 ~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~~~~~~~~~il 460 (872)
.++... ++.+.++++.+++.+...+ .|.++.||.++..+++.++........ .+......+++.++
T Consensus 359 ~l~~~~-~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 436 (1230)
T 1u6g_C 359 AVVSTR-HEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 436 (1230)
T ss_dssp HHHTTC-CTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred HHHHhc-hhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence 999855 3567888899999999999 999999999999999988875431000 00001134667778
Q ss_pred HHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccc
Q 002876 461 SVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCST 539 (872)
Q Consensus 461 ~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~ 539 (872)
+.+.+.+.+ ++++|..++.+++.++..+ +..+.+|++.+++.++..+.+... ...++..++.++..++...+
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~~------~~~l~~~l~~ll~~l~~~L~d~~~-~~~v~~~a~~~l~~~~~~~~ 509 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVNVL------PGALTQHIPVLVPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHS 509 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHS------TTTTGGGHHHHHHHHHHHTTCSSS-CHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHc------hhhhHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHHHhCC
Confidence 888887886 6899999999999999875 456789999999999999987642 24788888999998888776
Q ss_pred cC-cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhhHhhHhHHHHHHHHHHHH
Q 002876 540 DE-TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSE-QTKYVFMQYADQMMGLFLRVF 617 (872)
Q Consensus 540 ~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~~~~~~i~~~l~~~l 617 (872)
.. +.+|+..++|.++..+.. .. ..++..++.++..++..++... .....+.+|.+.+++.++..+
T Consensus 510 ~~~~~~~l~~llp~L~~~l~d---------~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 576 (1230)
T 1u6g_C 510 PQVFHPHVQALVPPVVACVGD---------PF----YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRL 576 (1230)
T ss_dssp GGGGHHHHTTTHHHHHHHHTC---------SS----HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHcc---------cc----hHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHH
Confidence 54 788999999988876522 11 1345567888999998887600 000117899999999999999
Q ss_pred --hccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH-hccccccHHHHHH
Q 002876 618 --AIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRAL-EDKILPYCDGIMT 694 (872)
Q Consensus 618 --~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~i~~ 694 (872)
.+.+..+|..++.++|.++...|..+.++++.++|.+...+.+. ..|..++.+++.++... +.++.+|++.+++
T Consensus 577 ~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e---~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~ 653 (1230)
T 1u6g_C 577 KAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE---ITRLTTVKALTLIAGSPLKIDLRPVLGEGVP 653 (1230)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS---SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc---hhHHHHHHHHHHHHhCccccchHHHHHHHHH
Confidence 55677899999999999999999999999999999999988754 46788888888877543 2356789999999
Q ss_pred HHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002876 695 QLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGI 774 (872)
Q Consensus 695 ~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l 774 (872)
.+...+.++ ++.+|.+++.+++.++...+..+. .+.+.+.+...+..-. ..|. .++..+++++..+
T Consensus 654 ~L~~~l~~~--~~~~r~~a~~al~~l~~~~~~~~~--~~~v~~~l~~ll~ll~---~~D~-------~~~~~~~~~L~~l 719 (1230)
T 1u6g_C 654 ILASFLRKN--QRALKLGTLSALDILIKNYSDSLT--AAMIDAVLDELPPLIS---ESDM-------HVSQMAISFLTTL 719 (1230)
T ss_dssp HHHHHTTSC--CHHHHHHHHHHHHHHHHHCCTTCC--HHHHHHHHTTCGGGSC---TTCH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CHHHHHHHHHHHHHHHhcccccCC--HHHHHHHHHHHHhhcC---cchH-------HHHHHHHHHHHHH
Confidence 999999887 778999999999999999886542 2344444433222210 0121 2345677788888
Q ss_pred hhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 002876 775 FQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLAD 824 (872)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~ 824 (872)
+.. .+..+.++.+.+++.+...+.............+.++..+..
T Consensus 720 ~~~-----~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 764 (1230)
T 1u6g_C 720 AKV-----YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764 (1230)
T ss_dssp TTS-----CGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHh-----CchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHh
Confidence 764 344566778888888888776533244444444444444443
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1e-32 Score=313.64 Aligned_cols=572 Identities=13% Similarity=0.107 Sum_probs=442.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHH
Q 002876 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN 173 (872)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~ 173 (872)
...++..+.++++.+|..++..++.++....+...|+++++.+.+.. ++++.+|..+..+++.+....++ ..+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~----~~~~~ 86 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGG----PEYVH 86 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTS----GGGGG
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCc----HHHHH
Confidence 44688899999999999999999999876544346889999998876 66788999999999877765422 23567
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 253 (872)
.+++.+...+. +++..+|..|++++..+....+.. ..++.+++.+..+.+++++..|..++.++..+....+.
T Consensus 87 ~ll~~L~~l~~--~~~~~vR~~a~~~L~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~- 159 (588)
T 1b3u_A 87 CLLPPLESLAT--VEETVVRDKAVESLRAISHEHSPS----DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS- 159 (588)
T ss_dssp GGHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTSCHH----HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-
T ss_pred HHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-
Confidence 77888777666 789999999999999988654431 22356788888888888999999999999987766543
Q ss_pred hHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhccc
Q 002876 254 LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (872)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (872)
...+.+++.+...+.|+++.+|..+++.+..+++.. + -..+.+.++|.+...+..
T Consensus 160 --~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~-----------------~----~~~~~~~l~~~l~~~~~d-- 214 (588)
T 1b3u_A 160 --AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL-----------------E----LDNVKSEIIPMFSNLASD-- 214 (588)
T ss_dssp --HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS-----------------C----HHHHHHTHHHHHHHHHTC--
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-----------------c----HHhHHHHHHHHHHHHhcC--
Confidence 235678888888889999999999999999887521 0 023345677777765531
Q ss_pred CCcccCCccchHhHHHHHHHHHHHHHcCC-cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 002876 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (872)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~ 412 (872)
+.|.+|..|..++..++...+. ...+.++|.+.+.+.+++|.+|.+++.+++.++...++ ..+.+.+++
T Consensus 215 -------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~ 284 (588)
T 1b3u_A 215 -------EQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVP 284 (588)
T ss_dssp -------SCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHH
T ss_pred -------CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHH
Confidence 2368999999999999988764 34567888888888999999999999999999876532 223467889
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccC
Q 002876 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA 491 (872)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (872)
.+...+ +|+++.||.+++++++.++...+.+ .....+.+.++|.+...++| ++.||..+++++..++..++..
T Consensus 285 ~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 285 AFQNLM-KDCEAEVRAAASHKVKEFCENLSAD-----CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTT-----THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred HHHHHh-CCCcHHHHHHHHHHHHHHHHHhChh-----hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 999999 9999999999999999999977421 00114677888988888887 6899999999999998876421
Q ss_pred CCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHH
Q 002876 492 ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDER 571 (872)
Q Consensus 492 ~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 571 (872)
...+.+++.+...+.+. ++.+|..++.+++.+....+.. .+...++|.+...+. +.+
T Consensus 359 --------~~~~~l~p~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~---------d~~- 415 (588)
T 1b3u_A 359 --------NTIEHLLPLFLAQLKDE---CPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAE---------DAK- 415 (588)
T ss_dssp --------HHHHHTHHHHHHHHTCS---CHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHT---------CSS-
T ss_pred --------HHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhc---------CCC-
Confidence 13466777778888765 5789999999999999877642 234556666655431 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHH
Q 002876 572 EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFY 651 (872)
Q Consensus 572 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~ 651 (872)
++++..++.++..++..++.. + +.+.+++.+...+++++..+|+.++.+++.++..+|..+ +++.++
T Consensus 416 ---~~vr~~~~~~l~~l~~~~~~~------~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~ll 482 (588)
T 1b3u_A 416 ---WRVRLAIIEYMPLLAGQLGVE------F--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATII 482 (588)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCGG------G--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTH
T ss_pred ---chHHHHHHHHHHHHHHHcCHH------H--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHH
Confidence 256777899999999888764 1 235688888899999999999999999999999998754 467899
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHh
Q 002876 652 KYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKY 731 (872)
Q Consensus 652 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~ 731 (872)
|.+...+++ .++.+|..++.+++.++..++.. .|.+.+++.+.+.+.++ ++++|..++.+++.++..+|..+.
T Consensus 483 p~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~-- 555 (588)
T 1b3u_A 483 PKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDNSTL-- 555 (588)
T ss_dssp HHHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCHHHH--
T ss_pred HHHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhchhhh--
Confidence 998877664 46799999999999999988754 37889999999999888 788999999999999998887643
Q ss_pred HHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 002876 732 LMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGI 774 (872)
Q Consensus 732 l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l 774 (872)
-+.++|.+...+++. | ..+|..+.+++..+
T Consensus 556 ~~~~~p~l~~l~~d~------d-------~~vr~~a~~al~~l 585 (588)
T 1b3u_A 556 QSEVKPILEKLTQDQ------D-------VDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHTTCS------S-------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCC------c-------hhHHHHHHHHHHHh
Confidence 257777777754322 2 36888888887665
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=7.1e-31 Score=298.51 Aligned_cols=571 Identities=15% Similarity=0.107 Sum_probs=430.5
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002876 39 LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAK 118 (872)
Q Consensus 39 ~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~ 118 (872)
+..|+..+.+ .+..+|..|+..+....... -+......+.+.+...+ ++++.+|..++.+++.
T Consensus 12 i~~l~~~l~s--~~~~~R~~A~~~l~~i~~~~--------------~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~ 74 (588)
T 1b3u_A 12 IAVLIDELRN--EDVQLRLNSIKKLSTIALAL--------------GVERTRSELLPFLTDTI-YDEDEVLLALAEQLGT 74 (588)
T ss_dssp HHHHHHHTTC--SCHHHHHHHHHTHHHHHHHS--------------CHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhc--ccHHHHHHHHHhHHHHHHHh--------------CHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHH
Confidence 4445556654 37888888888876644210 11223344555555555 6788999999999988
Q ss_pred HHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHH
Q 002876 119 VAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATR 198 (872)
Q Consensus 119 i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~ 198 (872)
+.....+...++.+++.+...+.++++.+|..|..++..++....++ .....+++.+..... +.++.+|..|+.
T Consensus 75 ~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~----~~~~~l~~~l~~l~~--~~~~~~R~~a~~ 148 (588)
T 1b3u_A 75 FTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS----DLEAHFVPLVKRLAG--GDWFTSRTSACG 148 (588)
T ss_dssp CSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH----HHHHTHHHHHHHHHT--CSSHHHHHHHGG
T ss_pred HHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 77654332467889999988888889999999999999998876222 223456666666555 668899999999
Q ss_pred HHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHH
Q 002876 199 ALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVAL 278 (872)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 278 (872)
+++.+....+. ..++.+++.+..+++++++.+|..++++|..++...+.. .+.+.+++.+...++++++.+|.
T Consensus 149 ~l~~~~~~~~~-----~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~ 221 (588)
T 1b3u_A 149 LFSVCYPRVSS-----AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRL 221 (588)
T ss_dssp GHHHHTTTSCH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHT
T ss_pred HHHHHHHhcCH-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHH
Confidence 99987655432 235678888888999999999999999999998876542 34567788888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHH
Q 002876 279 QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358 (872)
Q Consensus 279 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~ 358 (872)
.|++.+..+++..+ -....+.++|.+...+. +..|.+|.++..+++.++.
T Consensus 222 ~a~~~l~~l~~~~~---------------------~~~~~~~~~~~l~~~~~---------d~~~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 222 LAVEACVNIAQLLP---------------------QEDLEALVMPTLRQAAE---------DKSWRVRYMVADKFTELQK 271 (588)
T ss_dssp THHHHHHHHHHHSC---------------------HHHHHHHTHHHHHHHHT---------CSSHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhCC---------------------HHHHHHHHHHHHHHHcc---------CCCHHHHHHHHHHHHHHHH
Confidence 99999998886321 01223445666665542 2349999999999999998
Q ss_pred HcCCc-chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcc-hHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 002876 359 TVGDD-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL-VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGR 436 (872)
Q Consensus 359 ~~~~~-~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~-~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~ 436 (872)
..|.. ..+.+++.+.+.+.+++|.+|.++..+++.++........ ..+.+.++|.+...+ +|++|.||.+++++++.
T Consensus 272 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~ 350 (588)
T 1b3u_A 272 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMG 350 (588)
T ss_dssp HHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGG
T ss_pred HhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 87643 3467888888888999999999999999999988753211 156788899999999 99999999999999999
Q ss_pred hhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhcc
Q 002876 437 MFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR 515 (872)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~ 515 (872)
++...+. ....+.++|.+...+.| ++.||..++.++..++...+. ..+.+.+++.+...+.+
T Consensus 351 l~~~~~~---------~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--------~~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 351 LSPILGK---------DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--------RQLSQSLLPAIVELAED 413 (588)
T ss_dssp GHHHHCH---------HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--------HHHHHHHHHHHHHHHTC
T ss_pred HHHHhhH---------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHhcC
Confidence 9987742 22356788888888887 689999999999999886532 12456778888887765
Q ss_pred CCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 002876 516 EDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (872)
Q Consensus 516 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 595 (872)
. ++.+|..++.+++.++...+..+. .+.++|.++..+. +.+. .+|..++.++..++..++..
T Consensus 414 ~---~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~---------d~~~----~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 414 A---KWRVRLAIIEYMPLLAGQLGVEFF--DEKLNSLCMAWLV---------DHVY----AIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHCGGGC--CHHHHHHHHHGGG---------CSSH----HHHHHHHHHHHHHHHHHCHH
T ss_pred C---CchHHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHhc---------CCcH----HHHHHHHHHHHHHHHHhCch
Confidence 4 578999999999999988876432 2345566555432 1222 46777899999998887743
Q ss_pred cchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002876 596 EQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVG 675 (872)
Q Consensus 596 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 675 (872)
.+.+.+++.+...+++++..+|..++.+++.++..+|... +.+.++|.+.+.+++. ++++|..++.+++
T Consensus 476 --------~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 476 --------WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDP-VANVRFNVAKSLQ 544 (588)
T ss_dssp --------HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCC-CchHHHHHHHHHH
Confidence 2456778888888888888999999999999999888653 7889999999999865 5689999999999
Q ss_pred HHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHH
Q 002876 676 DLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720 (872)
Q Consensus 676 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i 720 (872)
.++..++..+. .+.+++.+..++.++ +.++|..+..+++.+
T Consensus 545 ~l~~~~~~~~~--~~~~~p~l~~l~~d~--d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 545 KIGPILDNSTL--QSEVKPILEKLTQDQ--DVDVKYFAQEALTVL 585 (588)
T ss_dssp HHGGGSCHHHH--HHHHHHHHHHHTTCS--SHHHHHHHHHHHHHT
T ss_pred HHHHHhchhhh--HHHHHHHHHHHcCCC--chhHHHHHHHHHHHh
Confidence 99887765432 256777777766666 788999999998865
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.97 E-value=4.2e-28 Score=290.86 Aligned_cols=508 Identities=14% Similarity=0.188 Sum_probs=348.7
Q ss_pred hhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhh
Q 002876 2 SAEVTQILLNAQSV--DGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELV 79 (872)
Q Consensus 2 ~~~l~~~l~~~~s~--~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 79 (872)
-.++.++++.+++| ++++|++|+++|++++++ |+++..+..++.+.+.+..+|++|+++||+.+++
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~---------- 77 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKF---------- 77 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH----------
Confidence 34688999999998 677899999999999988 6666666676665567899999999999999974
Q ss_pred hhccCCChHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHH
Q 002876 80 QRWLSLDSSVKAQIKSFILKTLSS-------PAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATL 152 (872)
Q Consensus 80 ~~~~~l~~~~~~~i~~~ll~~l~~-------~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al 152 (872)
.|..++++.+..||+.+++.+.+ ++..||++++.+++.|+++++| ..||++++.+.+.+++ ++..++.++
T Consensus 78 -~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L 154 (1204)
T 3a6p_A 78 -RWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVM 154 (1204)
T ss_dssp -SGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHH
T ss_pred -hcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHH
Confidence 46679999999999999999763 3589999999999999999999 7999999999999876 567789999
Q ss_pred HHHHHhhhhcc-ccccc-----------hhhHHHHHHHHHhcccCC-----------------CCCHHHHHHHHHHHHHh
Q 002876 153 ETLGYICEEVS-SDAVE-----------QDHVNKILTAVVQGMNAS-----------------ESNNDVRLAATRALYNA 203 (872)
Q Consensus 153 ~~l~~i~~~~~-~~~l~-----------~~~~~~i~~~l~~~l~~~-----------------~~~~~vr~~al~~l~~~ 203 (872)
.+|..++++.. .+... ...++.|++.+.+.+... ..+..++..+++++.++
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 99999988741 11110 123556777766665420 12346788999999988
Q ss_pred HhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH--Hhh---------------------------
Q 002876 204 LGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY--EKL--------------------------- 254 (872)
Q Consensus 204 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~--~~~--------------------------- 254 (872)
+.+.+-.+.... .+.+++.++..+. ++++|..|++||..++.... +..
T Consensus 235 l~Wi~~~~i~~~-~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~ 311 (1204)
T 3a6p_A 235 IDWVSMSHITAE-NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGL 311 (1204)
T ss_dssp TTTSCHHHHHTT-TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSC
T ss_pred HhccCHHHHHhc-cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCC
Confidence 877653221110 1235666665543 35566677777776665331 110
Q ss_pred ----------------------------------HhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002876 255 ----------------------------------APYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG 300 (872)
Q Consensus 255 ----------------------------------~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~ 300 (872)
.+++..+++.++..+.+++.++...++++|..+.+...
T Consensus 312 ~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~-------- 383 (1204)
T 3a6p_A 312 VEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEI-------- 383 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTT--------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccc--------
Confidence 01122334444444444444555555666655443210
Q ss_pred CCCCCCCCchHhHHHhhhhhHHHHHHH---HHhcccCCc-----------ccC----CccchHhHHHHHHHHHHHHHcCC
Q 002876 301 DFSGDSDIPCFYFIKHALPVLVPLLLE---TLLKQEEDQ-----------DQD----EGAWNIAMAGGTCLGLVARTVGD 362 (872)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~l~~~l~~---~l~~~~~d~-----------~~~----~~~~~~r~~a~~~l~~l~~~~~~ 362 (872)
+.......++++.|++.+.. .+.+.+++. |++ +..|+.|+...+.+..++...+.
T Consensus 384 -------~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~ 456 (1204)
T 3a6p_A 384 -------LSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK 456 (1204)
T ss_dssp -------TTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred -------ccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 00112356777888888843 343322111 101 13468899999999999998887
Q ss_pred cchhchHHHHHhhhc-------------------------CcchhhhHHHHHHHHHhhCCCC----CCcch-HHHHHHHH
Q 002876 363 DIVPLVMPFVEENIT-------------------------KQEWRQREAATYAFGSILEGPS----PEKLV-PLVNIALN 412 (872)
Q Consensus 363 ~~~~~l~~~l~~~~~-------------------------~~~~~~r~aal~~l~~l~~~~~----~~~~~-~~~~~i~~ 412 (872)
..++.+.+.+.+.+. ++.|...++...++.++++++. ..... ...+.+++
T Consensus 457 ~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~ 536 (1204)
T 3a6p_A 457 TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ 536 (1204)
T ss_dssp HHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 777666666643322 3457888888888887766541 01111 23455555
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-------------ChhHHHHHHH
Q 002876 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-------------VPNVAEKACG 479 (872)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-------------~~~v~~~a~~ 479 (872)
.+.. + +..+|.+|..++.+++++.+++. .++++++.+++.++..+.+ +.++|.+|+.
T Consensus 537 ~ll~-~-~~~~p~l~~~~i~~l~~l~~~~~--------~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~ 606 (1204)
T 3a6p_A 537 MVLN-F-DTKDPLILSCVLTNVSALFPFVT--------YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACS 606 (1204)
T ss_dssp HHHH-C-CCSCHHHHHHHHHHHHHHGGGGG--------TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHH
T ss_pred HHHh-C-CCCChHHHHHHHHHHHHHHHHHh--------cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHH
Confidence 4333 2 34689999999999999999875 3568999999999988754 1379999999
Q ss_pred HHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCC-chhhhhHHHHHHHHHHHHHcccc--CcHHHHHHHHHHHHHH
Q 002876 480 ALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED-AGESRLRTAAYETLNEVVRCSTD--ETAPMVMQLVPLIMME 556 (872)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~-~~~~~v~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~ 556 (872)
++..++..+ +..+.||++.|...+...+.... . ...-+...++++..+....+. ....++..+++++++.
T Consensus 607 al~~L~~~~------~~~L~p~~~~i~~~~~~~l~~~~~l-~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~ 679 (1204)
T 3a6p_A 607 SIIKMCRDY------PQLVLPNFDMLYNHVKQLLSNELLL-TQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASI 679 (1204)
T ss_dssp HHHHHHHHC------HHHHGGGHHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------hHHHHHHHHHHHHHHHHHHhCcccc-cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999987 46789999999999988776443 2 233345678888888655432 3556789999999988
Q ss_pred HHH
Q 002876 557 LHQ 559 (872)
Q Consensus 557 l~~ 559 (872)
|..
T Consensus 680 w~~ 682 (1204)
T 3a6p_A 680 WLS 682 (1204)
T ss_dssp HSC
T ss_pred Hcc
Confidence 874
No 20
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.92 E-value=6.1e-22 Score=237.14 Aligned_cols=652 Identities=11% Similarity=0.068 Sum_probs=399.3
Q ss_pred hcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccCh---hh
Q 002876 140 IHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND---ME 216 (872)
Q Consensus 140 l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~ 216 (872)
+.+++...|..|-..|..+-+. |+ ..+.+...+.. +.+..+|..|+.+|.+.+......+..+ ..
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~--p~---------~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEAS--PQ---------AWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTS--TH---------HHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcC--HH---------HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 3345666777777777654321 22 11223333433 5689999999999999886533333221 22
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcC------ChhhHHHHHHHHHHHHHH
Q 002876 217 RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED------EEPVALQAIEFWSSVCDE 290 (872)
Q Consensus 217 ~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~v~~~a~~~~~~l~~~ 290 (872)
++.+++.+..... ....+|..++.++..++...+. .++.+++.+...+++. ++.....++++|..+++.
T Consensus 84 r~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EE 158 (971)
T 2x1g_F 84 KQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLG----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEE 158 (971)
T ss_dssp HHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccc----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHH
Confidence 4566777666543 3588999999999999998653 4556666666666553 456788899999999874
Q ss_pred HHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHH--cCCcchhch
Q 002876 291 EIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART--VGDDIVPLV 368 (872)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~--~~~~~~~~l 368 (872)
... +. +...+......+...++.+++.+...+.....+. .+++.|+++..+..|+...... .+....+.+
T Consensus 159 i~~----~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~-~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~l 230 (971)
T 2x1g_F 159 AQV----IH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRV-WDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTI 230 (971)
T ss_dssp HHH----CC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred Hhc----cC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCccchhHHHHHHHHHHHHHhhCCcCccccccH
Confidence 321 11 0000001124455666777777777665432221 1123468888888998877763 343344556
Q ss_pred HHHHHhhh----------------cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHH-------HhccCCc--
Q 002876 369 MPFVEENI----------------TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT-------ALMQDPN-- 423 (872)
Q Consensus 369 ~~~l~~~~----------------~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~-------~l~~d~~-- 423 (872)
++.+.. + .+++...|++++.++..+.+........+.+..+++.+.. .+ .+.+
T Consensus 231 l~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~d~~ 308 (971)
T 2x1g_F 231 TAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTE-WKREND 308 (971)
T ss_dssp HHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHH-SSSSCS
T ss_pred HHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHH-hccccc
Confidence 665554 3 1134678999999999998764222333444445544433 23 3333
Q ss_pred -HHHHHHHHHHHHHhhhhccCCCC----CCcccCccchHHHHHHHHHhcc------CChhHHHHHHHHHHHHHHhcccC-
Q 002876 424 -NHVKDTTAWTLGRMFEFLHGSTL----ETPIINQGNCQQIISVLLQSMK------DVPNVAEKACGALYFLAQGFEDA- 491 (872)
Q Consensus 424 -~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~~~~~~il~~l~~~l~------d~~~v~~~a~~al~~l~~~~~~~- 491 (872)
..+....+..+..+++....... ........++..+++.++.... ++..+...++..+..+++.....
T Consensus 309 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~ 388 (971)
T 2x1g_F 309 NEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS 388 (971)
T ss_dssp CSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 25666667777777754321000 0000012466678888887552 35788889999888887733110
Q ss_pred -----CCCCCCCchhHHHHHHHHHHhhccCCch------------hhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHH
Q 002876 492 -----ISPSSPLTPFFQEIVQALLTVTHREDAG------------ESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIM 554 (872)
Q Consensus 492 -----~~~~~~l~~~l~~i~~~l~~~l~~~~~~------------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 554 (872)
......+.|++..+++.++..+..++.. -...|..+.+++..+....++.. +..+++.+-
T Consensus 389 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~---l~~~~~~l~ 465 (971)
T 2x1g_F 389 NDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYI---LEILAAMLD 465 (971)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHH---HHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHH
Confidence 0001234578888888888877433210 02456677778877777766433 333333333
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHh--ccccchhhHHHHHH
Q 002876 555 MELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA--IRSATAHEEAMLAI 632 (872)
Q Consensus 555 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~~~a~~~l 632 (872)
+.+..... ++..| ..+..++.+++.++..+... ..++++.+++.+ ..+. +.++.+|..++.++
T Consensus 466 ~~l~~~~~-------~~~~w-~~~eaal~~l~~iae~~~~~------~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l 530 (971)
T 2x1g_F 466 EAIADLQR-------HPTHW-TKLEACIYSFQSVAEHFGGE------EKRQIPRLMRVL-AEIPYEKLNVKLLGTALETM 530 (971)
T ss_dssp HHHHHHHH-------CTTCC-HHHHHHHHHHHHTTTC------------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHH
T ss_pred HHHHhccC-------CCCcH-HHHHHHHHHHHHHHhhcChh------hhHHHHHHHHHH-HhcCccccCHHHHHHHHHHH
Confidence 33322110 01112 23345666777776555443 345677777733 3334 34677999999999
Q ss_pred HHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchh
Q 002876 633 GALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPP 712 (872)
Q Consensus 633 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~ 712 (872)
|+++..++... .|++.++|.++..+. +.++..|+.++..+++.++..+.||++.++..+..++.++..+...+..
T Consensus 531 ~~~~~~l~~~~-~~l~~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~ 605 (971)
T 2x1g_F 531 GSYCNWLMENP-AYIPPAINLLVRGLN----SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVR 605 (971)
T ss_dssp HHTHHHHC-----CHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHH
Confidence 99998887654 789999999999883 4789999999999999999999999999999999999986556678889
Q ss_pred HHHHHHHHHHHhc-cchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCc--------
Q 002876 713 IFSCFGDIALAIG-ENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPK-------- 783 (872)
Q Consensus 713 ~~~~l~~i~~~~~-~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 783 (872)
++.+++.++...+ +.+.+|+..+++.+...++...+....+++.. .-....++.+++++..+.....
T Consensus 606 ~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~----~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~ 681 (971)
T 2x1g_F 606 LMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAAR----IRTIFRLNMISTLFSSLNTDVDEQATDQPI 681 (971)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHH----HHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhH----HHHHHHHHHHHHHHhhcCCCcCcccccccC
Confidence 9999999998775 67788888888888877664321110011111 1122355666666665543210
Q ss_pred ccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHH
Q 002876 784 TQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNEC 847 (872)
Q Consensus 784 ~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~ 847 (872)
.+.+.+|.+.+++.+..++.....+.++.+.++.+++.++..+|+++.|++++ +++.++...
T Consensus 682 ~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~--~~~~l~~~~ 743 (971)
T 2x1g_F 682 VQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD--LCLFIVASF 743 (971)
T ss_dssp --CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH--HHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH--HHHHHHHHH
Confidence 34578899999999988887534578999999999999999999999999887 565555443
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.90 E-value=3.4e-18 Score=203.40 Aligned_cols=644 Identities=13% Similarity=0.095 Sum_probs=402.5
Q ss_pred HHHHhcCCC--ChHHHHHHHHHHHHHHHhhcCCC----Cc-----hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccc
Q 002876 96 FILKTLSSP--AHDARSTASQVVAKVAGIELPHK----QW-----PELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (872)
Q Consensus 96 ~ll~~l~~~--~~~vr~~~a~~l~~i~~~~~~~~----~~-----~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~ 164 (872)
.+++.+.++ +..+|..|+..+.......+... .. ..+-..+++.+.+++..+|.....++..|+....|
T Consensus 39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p 118 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118 (960)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc
Confidence 466666543 57899999999999987765311 12 23445666766666688898888999988875313
Q ss_pred cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhH-----------HHHHHHH---HHhhcC
Q 002876 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMER-----------DYIMRVV---CEATLS 230 (872)
Q Consensus 165 ~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-----------~~il~~l---~~~~~~ 230 (872)
..++.+++.+.+.+. +++...+..++.++..++......+.....+ +.+++.+ ...+++
T Consensus 119 -----~~Wp~ll~~L~~~l~--s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~ 191 (960)
T 1wa5_C 119 -----DRWPTLLSDLASRLS--NDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITA 191 (960)
T ss_dssp -----TTCTTHHHHHHTTCC--SSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -----cchhHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999988 4566788999999999876443222221111 1122222 222443
Q ss_pred CCH---HHH------HHHHHHHHHHHH-HhHHhhHhhHHHHHHHHHHHHhcC--------C-------hhhHHHHHHHHH
Q 002876 231 PEV---KIR------QAAFECLVAISS-TYYEKLAPYIQDIFNITAKAVRED--------E-------EPVALQAIEFWS 285 (872)
Q Consensus 231 ~~~---~~r------~~~~~~l~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~--------~-------~~v~~~a~~~~~ 285 (872)
+.. .++ ..+++++..+.. ..++.+..++..+++.+...+... + +.++..+++.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~ 271 (960)
T 1wa5_C 192 NENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQ 271 (960)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHH
Confidence 322 122 223333333221 124445556666667666655321 1 135677788777
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHH------
Q 002876 286 SVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART------ 359 (872)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~------ 359 (872)
.+.+..+ ..+.++++.+++.+++.+....... .++ .++..+.+.+..+++.
T Consensus 272 ~l~~~~~-------------------~~f~~~~~~~~~~~~~~l~~~~~~~-~~~---~~~~~al~fl~~~~~~~~~~~~ 328 (960)
T 1wa5_C 272 LYTTRYE-------------------DVFGPMINEFIQITWNLLTSISNQP-KYD---ILVSKSLSFLTAVTRIPKYFEI 328 (960)
T ss_dssp HHHHHCH-------------------HHHHHHHHHHHHHHHHHHHHCCSCT-TSH---HHHHHHHHHHHHHHTSHHHHGG
T ss_pred HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhcCCCc-CcH---HHHHHHHHHHHHHhCcHhHHHH
Confidence 7776432 3446677777887777665322111 111 4566666666665431
Q ss_pred cC-Ccchhc-----hHHHHH---h---------------hh-cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 002876 360 VG-DDIVPL-----VMPFVE---E---------------NI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (872)
Q Consensus 360 ~~-~~~~~~-----l~~~l~---~---------------~~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l 414 (872)
+. ...++. +++.+. + .. .+..|..|.+|..++..++.... ...++.+++.+
T Consensus 329 ~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~----~~v~~~~l~~i 404 (960)
T 1wa5_C 329 FNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE----VLVTNIFLAHM 404 (960)
T ss_dssp GCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH----HHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc----hhHHHHHHHHH
Confidence 11 122222 223221 0 01 12236789999999999887652 34456667777
Q ss_pred HHHhcc------CCcHHHHHHHHHHHHHhhhhccCCCCCCccc---CccchHHH-HHHHHHhccC----ChhHHHHHHHH
Q 002876 415 LTALMQ------DPNNHVKDTTAWTLGRMFEFLHGSTLETPII---NQGNCQQI-ISVLLQSMKD----VPNVAEKACGA 480 (872)
Q Consensus 415 ~~~l~~------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~~~i-l~~l~~~l~d----~~~v~~~a~~a 480 (872)
...+ + +++|+.|++|+.++|.+++....... +.. ....+..+ ...++..+.+ ++.||.+|||+
T Consensus 405 ~~~l-~~~~~~~~~~w~~reaal~algaia~~~~~~~~--~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~ 481 (960)
T 1wa5_C 405 KGFV-DQYMSDPSKNWKFKDLYIYLFTALAINGNITNA--GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKY 481 (960)
T ss_dssp HHHH-HHHHC----CHHHHHHHHHHHHHHHBSSCCBTT--BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHH
T ss_pred HHHH-HHhccCcchhHHHHHHHHHHHHHHHHHhccccC--CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHH
Confidence 6666 5 67899999999999999875311000 000 00023332 2334444442 68999999999
Q ss_pred HHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcc-----------ccCcHHHHHHH
Q 002876 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCS-----------TDETAPMVMQL 549 (872)
Q Consensus 481 l~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~-----------~~~~~~~~~~l 549 (872)
++.+++.+. ..++..+++.++..+.+. ++.|+..|+.++..++... +....||+..+
T Consensus 482 lg~~~~~~~---------~~~l~~~l~~l~~~L~d~---~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~l 549 (960)
T 1wa5_C 482 IYTFRNQLT---------KAQLIELMPILATFLQTD---EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEIL 549 (960)
T ss_dssp HHHTGGGSC---------HHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHH
T ss_pred HHHHHhhCC---------HHHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHH
Confidence 999987541 248999999999998764 5779999999999998742 23467888888
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc-----ccch
Q 002876 550 VPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR-----SATA 624 (872)
Q Consensus 550 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~-----~~~~ 624 (872)
++.++..+..... ++... .....+++++..++..++.. +.||++.+++.+...+... +...
T Consensus 550 l~~L~~ll~~~~~----~~~~~----~~~e~l~~al~~vv~~~~~~------~~p~~~~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 550 LKNLIALILKHGS----SPEKL----AENEFLMRSIFRVLQTSEDS------IQPLFPQLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp HHHHHHHHHTTCC----CHHHH----TSCHHHHHHHHHHHHHHTTT------TGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHhccC----CCCcc----cccHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 8888877754200 00000 01124788999999998876 8899999999998887652 3346
Q ss_pred hhHHHHHHHHHHHHhh-hhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--HHcc
Q 002876 625 HEEAMLAIGALAYATG-QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLL--KDLS 701 (872)
Q Consensus 625 ~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~--~~l~ 701 (872)
+..++.+++.++...+ +.+.++.+.++|.+...+++.. .+....++.+++.+.... ..+.+|+..+++.+. ..++
T Consensus 616 ~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~ 693 (960)
T 1wa5_C 616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWE 693 (960)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhc
Confidence 6678999999998754 4677888899999999887543 356777888888888776 678888888888887 6665
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCC
Q 002876 702 SNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGS 781 (872)
Q Consensus 702 ~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 781 (872)
.. ..-..+..++...+...++.+.. ++.++..+.+.+..+ .. +..++.++..++..+
T Consensus 694 ~~----~~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~------~~---------~~~a~~ll~~i~~~~--- 750 (960)
T 1wa5_C 694 LK----GNIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK------AY---------EVHGFDLLEHIMLLI--- 750 (960)
T ss_dssp CT----TTHHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT------TT---------HHHHHHHHHHHHHHS---
T ss_pred CC----CCchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCC------cc---------cchHHHHHHHHHHHC---
Confidence 43 12244555565555544443332 244454444444332 11 133556666666652
Q ss_pred CcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 002876 782 PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN 829 (872)
Q Consensus 782 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~ 829 (872)
.+..+.||++.+++.+.+.+.. ...++++...+..++.++..+|.+
T Consensus 751 -~~~~~~~yl~~i~~~l~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~~ 796 (960)
T 1wa5_C 751 -DMNRLRPYIKQIAVLLLQRLQN-SKTERYVKKLTVFFGLISNKLGSD 796 (960)
T ss_dssp -CHHHHGGGHHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHhh-CCcHhHHHHHHHHHHHHHHHcCHH
Confidence 2233899999999999999886 356788877787888777766654
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.88 E-value=6.9e-19 Score=211.08 Aligned_cols=646 Identities=13% Similarity=0.090 Sum_probs=401.0
Q ss_pred hcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccCh---hh
Q 002876 140 IHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSND---ME 216 (872)
Q Consensus 140 l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~ 216 (872)
..++++..|..|-..|..+-+. |+.. . .+...+.. +.+..+|..|+.+|.+.+...-..+..+ ..
T Consensus 34 ~~~~~~~~r~~A~~~L~~~~~~--p~~~-----~----~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 101 (963)
T 2x19_B 34 YYDPNIENKNLAQKWLMQAQVS--PQAW-----H----FSWQLLQP-DKVPEIQYFGASALHIKISRYWSDIPTDQYESL 101 (963)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHS--TTHH-----H----HHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhcC--HHHH-----H----HHHHHhcC-CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH
Confidence 4456778888888888765432 3322 1 22222332 5789999999999999886433333221 12
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHHHHH
Q 002876 217 RDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE-----DEEPVALQAIEFWSSVCDEE 291 (872)
Q Consensus 217 ~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~~~~l~~~~ 291 (872)
++.+++.+.... +....+|...+.++..++..... ..++.+++.+...+++ .++.....++.+|..+++..
T Consensus 102 r~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p---~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~ 177 (963)
T 2x19_B 102 KAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMP---DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEF 177 (963)
T ss_dssp HHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTT---TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCc---cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHH
Confidence 355666665532 23588999999999999987542 1245566666666554 25557788899999888643
Q ss_pred HHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcch--hchH
Q 002876 292 IDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV--PLVM 369 (872)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l~ 369 (872)
.+. .. +...+......+...++.+++.+...+..... .. .++..+.+|+..... .+.... +.++
T Consensus 178 ~~~----~~--~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~------~~-~~~~~~l~~l~~wi~-~~~~~~~~~~ll 243 (963)
T 2x19_B 178 QTS----RL--PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS------PS-CVRQKVLKCFSSWVQ-LEVPLQDCEALI 243 (963)
T ss_dssp TTC----CC-----------CCSGGGHHHHHHHHHHHHSCTTC------CH-HHHHHHHHHHHHHHT-SSCCGGGTHHHH
T ss_pred hcc----cC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------ch-HHHHHHHHHHHHHHc-CCCCcccchHHH
Confidence 110 00 00000001122345566677777776643211 11 256666677655444 333332 5567
Q ss_pred HHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHH-------HhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 370 PFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT-------ALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 370 ~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~-------~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
+.+.+.+. +|..|.+++.++..+.....+....+.+..+++.+.. .+ .+.+.......+.++..+++..+
T Consensus 244 ~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~d~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 244 QAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAV-QNGDMETSHGICRIAVALGENHS 320 (963)
T ss_dssp HHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhH
Confidence 76666663 5889999999999998864322334445555544432 23 33334455566677777665432
Q ss_pred CCCCCCcccCccchHHHHHHHHHhccC------ChhHHHHHHHHHHHHHHhcccC-----CCCCCCCchhHHHHHHHHHH
Q 002876 443 GSTLETPIINQGNCQQIISVLLQSMKD------VPNVAEKACGALYFLAQGFEDA-----ISPSSPLTPFFQEIVQALLT 511 (872)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~d------~~~v~~~a~~al~~l~~~~~~~-----~~~~~~l~~~l~~i~~~l~~ 511 (872)
..... .......+..+++.++..... +..+...++..+..+++..... ......+.|++..+++.++.
T Consensus 321 ~~l~~-~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 399 (963)
T 2x19_B 321 RALLD-QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLH 399 (963)
T ss_dssp HHHHH-CGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 10000 000234556777777765542 3455666666666666632100 00022345788888888888
Q ss_pred hhccCCchh------------hhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 002876 512 VTHREDAGE------------SRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQG 579 (872)
Q Consensus 512 ~l~~~~~~~------------~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 579 (872)
.+..++..+ ...|..+.+++..+....+. .+++.+++.+...++... +.. .| ..+.
T Consensus 400 ~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~-------~~l~~~~~~l~~~l~~~~-~~~---~w-~~~e 467 (963)
T 2x19_B 400 KAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA-------ELLSNLYDKLGRLLTSSE-EPY---SW-QHTE 467 (963)
T ss_dssp HHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHTCC-CSC---CH-HHHH
T ss_pred HHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH-------HHHHHHHHHHHHHHHhcC-CCC---ch-HHHH
Confidence 775433110 12344555666666555442 233333333333321110 011 12 3345
Q ss_pred HHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhc
Q 002876 580 LLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQ 659 (872)
Q Consensus 580 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 659 (872)
.++.+++.++..+... ..++++.+++.+.. +.++++.+|..++.++|+++..++... ++++.+++.++..+.
T Consensus 468 aal~al~~i~~~~~~~------~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~ 539 (963)
T 2x19_B 468 ALLYGFQSIAETIDVN------YSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHP-VMINSVLPLVLHALG 539 (963)
T ss_dssp HHHHHHHHHTTSCCSS------CCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHTTTHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCch------hhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHhC
Confidence 6788888887766543 34566666664433 233456699999999999998777543 789999999999996
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc-cchHHhHHHHHHH
Q 002876 660 NFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG-ENFEKYLMYAMPM 738 (872)
Q Consensus 660 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~-~~~~~~l~~il~~ 738 (872)
+ +.++..|+.++..+++.++..+.||++.+++.+..++.....+...+..++.++|.++...+ +.+.+|++.+++.
T Consensus 540 ~---~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~ 616 (963)
T 2x19_B 540 N---PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISP 616 (963)
T ss_dssp C---GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred C---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4 58999999999999999999999999999999999998654455678889999999998886 7899999999999
Q ss_pred HHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCC-----------------cccccccchHHHHHHHHHH
Q 002876 739 LQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSP-----------------KTQLLMPYAPHILQFLDSL 801 (872)
Q Consensus 739 l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~i~~~l~~~ 801 (872)
+...++...+.. .++ +. ...+...++++..++..+.... ....+.++...+++.+..+
T Consensus 617 l~~~l~~~~~~~-~~~---~~-~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (963)
T 2x19_B 617 YIQQLEKLAEEI-PNP---SN-KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKV 691 (963)
T ss_dssp HHHHHHHHHSSC-SCH---HH-HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCH---HH-HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 998876532110 121 11 1233456777888887765421 1122556788888888877
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhc
Q 002876 802 YMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLS 849 (872)
Q Consensus 802 l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~ 849 (872)
+.....+.++++.++.+++.++..+|+.+.+++++ ++..++.....
T Consensus 692 l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~--~~~~l~~~~~~ 737 (963)
T 2x19_B 692 LSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ--LCEMLGRMYST 737 (963)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHH--HHHHHHHHHHH
T ss_pred HHhccCchHHHHHHHHHHHHHHHhhcccccccHHH--HHHHHHHHHHc
Confidence 76434577999999999999999999999999887 67766665554
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.84 E-value=1.8e-18 Score=189.77 Aligned_cols=417 Identities=15% Similarity=0.150 Sum_probs=290.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHH-HHHhcCCCCCC
Q 002876 228 TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRE--DEEPVALQAIEFWSSVCDEEID-ILEEYGGDFSG 304 (872)
Q Consensus 228 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~a~~~~~~l~~~~~~-~~~~~~~~~~~ 304 (872)
+.+++.++|+.|-+.|..+-.... +.++..++..+.+ .+..+|..|.-.+..+....-. ......
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~~~~~-------~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~----- 77 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAAVENL-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ----- 77 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH-----
T ss_pred hcCCCHHHHHHHHHHHHHHHhhCh-------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH-----
Confidence 457889999999999988554311 2223333333333 3567888888777776521000 000000
Q ss_pred CCCCchH-hHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc-CCcchhchHHHHHhhhcCc--c
Q 002876 305 DSDIPCF-YFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-GDDIVPLVMPFVEENITKQ--E 380 (872)
Q Consensus 305 ~~~~~~~-~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~~~~~--~ 380 (872)
..+ ..-......+...++..+.. ++ ..+ ..++.++..++... +...+|.++|.+.+.+.++ +
T Consensus 78 ----~~~~~l~~~~~~~ik~~ll~~l~~--~~-------~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~ 143 (462)
T 1ibr_B 78 ----QRWLAIDANARREVKNYVLQTLGT--ET-------YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST 143 (462)
T ss_dssp ----HHHHTSCHHHHHHHHHHHHHHTTC--CC-------SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCC
T ss_pred ----hhhhcCCHHHHHHHHHHHHHHhCC--CC-------chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCC
Confidence 000 00011122334445555542 11 134 56778898888875 4457899999999999888 8
Q ss_pred hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCC--cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHH
Q 002876 381 WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQ 458 (872)
Q Consensus 381 ~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (872)
+..|++++.+++.+++...++.+.++.+.+++.+...+ +|+ ++.||..|+++++.+....... .....+...
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~~~~ 217 (462)
T 1ibr_B 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKAN-----FDKESERHF 217 (462)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHTTTTHHH-----HTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHh-----hhhhHHHHH
Confidence 99999999999999876534556788899999999999 888 7999999999999977654310 000111223
Q ss_pred HHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHH-HHHHHHHHhhccCCchhhhhHHHHHHHHHHHHH
Q 002876 459 IISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ-EIVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (872)
Q Consensus 459 il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~-~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~ 536 (872)
+++.+...+.+ ++.+|..++.++..+++.+ +..+.+|++ .+++.++..+.+. ++.+|..+++.+..+++
T Consensus 218 l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~------~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLY------YQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC------GGGCTTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHHH
Confidence 56666666665 6899999999999999876 355677888 8888888877664 56789899999988876
Q ss_pred cc---------------------ccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 002876 537 CS---------------------TDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (872)
Q Consensus 537 ~~---------------------~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 595 (872)
.. .....+++..++|.+++.+... ..+++.+. +..+..+..++..++..++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~-----d~d~~~~~-~~~r~~a~~~L~~l~~~~~~~ 362 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ-----DENDDDDD-WNPCKAAGVCLMLLATCCEDD 362 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC-----CSSCCTTC-CSHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc-----cccccccc-chHHHHHHHHHHHHHHhccHH
Confidence 53 0112345567777776655321 00000111 145667889999999988743
Q ss_pred cchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh-hhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002876 596 EQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG-QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVV 674 (872)
Q Consensus 596 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l 674 (872)
..+.+++.+.+.++++++.+|+.++.++|.++...+ ..+.++++.++|.+...++++ ++.+|..|++++
T Consensus 363 ---------~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l 432 (462)
T 1ibr_B 363 ---------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTV 432 (462)
T ss_dssp ---------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 456788888889999999999999999999998665 456788999999999999865 579999999999
Q ss_pred HHHHHHHhccc--cccHHHHHHHHHHHcc
Q 002876 675 GDLCRALEDKI--LPYCDGIMTQLLKDLS 701 (872)
Q Consensus 675 ~~l~~~~~~~~--~~~~~~i~~~l~~~l~ 701 (872)
+.++..++..+ .+|++.+++.++..++
T Consensus 433 ~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 433 GRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999998765 5899999999887664
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.80 E-value=1.3e-15 Score=169.57 Aligned_cols=685 Identities=12% Similarity=0.051 Sum_probs=424.1
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcCh-------hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhH
Q 002876 5 VTQILLNAQ--SVDGTVRKQAEESLKQYQEQNL-------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRK 75 (872)
Q Consensus 5 l~~~l~~~~--s~~~~~r~~a~~~L~~~~~~~~-------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~ 75 (872)
+.+++..+. +.+.+.|++|..-|-=+..++. .+.+..|..++.+ ..++++...|..+|......+-+.-.
T Consensus 8 v~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~r~~~~~~~~~~~r~~ 86 (810)
T 3now_A 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV-EKDQDIYVNMVHLVAALCENSVERTK 86 (810)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhc-cCchhHHHHHHHHHHHHHhccHHHHH
Confidence 556666664 4677899999888864433311 2234455566654 46889999999888887765421110
Q ss_pred HHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcC--CCC---------------chhHHHHHHH
Q 002876 76 FELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP--HKQ---------------WPELIGALLS 138 (872)
Q Consensus 76 ~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~--~~~---------------~~~l~~~l~~ 138 (872)
..|..+. .+.+.+.+.++++.+...++.++..+.....+ ... ...++..|+.
T Consensus 87 ----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (810)
T 3now_A 87 ----GVLTELG-------VPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVY 155 (810)
T ss_dssp ----HHHHHSC-------HHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred ----HHHHHcC-------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHH
Confidence 1222222 23588888899999999999999998875432 111 1346667777
Q ss_pred hhcCC--ChhHHHHHHHHHHHhhhhcccc---ccc-hhhHHHHHHHHHhccc----C-CCCCHHHHHHHHHHHHHhHhhc
Q 002876 139 NIHQL--PPHTKQATLETLGYICEEVSSD---AVE-QDHVNKILTAVVQGMN----A-SESNNDVRLAATRALYNALGFA 207 (872)
Q Consensus 139 ~l~~~--~~~~r~~al~~l~~i~~~~~~~---~l~-~~~~~~i~~~l~~~l~----~-~~~~~~vr~~al~~l~~~~~~~ 207 (872)
.+.+. +...|..+++.+.+.+...+.+ .+. ..-+..++....+.-. + -....+.|..+.-++..+.+-+
T Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~ 235 (810)
T 3now_A 156 SITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENM 235 (810)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTC
T ss_pred HhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHh
Confidence 77776 4578999999998766432111 110 0122223322221110 0 0125688999999999877543
Q ss_pred hhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH--HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 002876 208 QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI--QDIFNITAKAVREDEEPVALQAIEFWS 285 (872)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~a~~~~~ 285 (872)
...-..+.....+-+.+...+..++.+-+..++.++..++...++.-...+ +..++.++..+.++++.++..|++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~ 315 (810)
T 3now_A 236 YYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLI 315 (810)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 311111111122333344445567777788888899888876555422222 267788888889999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcC----
Q 002876 286 SVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG---- 361 (872)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~---- 361 (872)
..+.... +..++... -+|.+...+.. ++ ..+|..|..+|..++...+
T Consensus 316 ~aa~~~~-----------------~R~~I~~~---gv~~L~~Ll~s--~~-------~~vr~~Al~~L~kl~s~~~~d~~ 366 (810)
T 3now_A 316 AASSKKD-----------------KAKALCEQ---GVDILKRLYHS--KN-------DGIRVRALVGLCKLGSYGGQDAA 366 (810)
T ss_dssp HHTTSHH-----------------HHHTTHHH---HHHHHHHHTTC--SC-------HHHHHHHHHHHHHHHTTTTTTTS
T ss_pred HHcCCcH-----------------HHHHHHHc---CcHHHHHHHcC--CC-------HHHHHHHHHHHHHhccccccCcc
Confidence 8775321 11222221 12666665542 11 1557777778877764322
Q ss_pred -----CcchhchHHHHHhhhcCc--chhhhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHHhccCCcHHHHHHHHH
Q 002876 362 -----DDIVPLVMPFVEENITKQ--EWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAW 432 (872)
Q Consensus 362 -----~~~~~~l~~~l~~~~~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~ 432 (872)
+..+..+++.+.+.+.++ +..+|+.++.+|+.++... ..-.... ..++|.++..+ .++++.++..+++
T Consensus 367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~ 443 (810)
T 3now_A 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVT 443 (810)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHH
T ss_pred ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHh-CCCChHHHHHHHH
Confidence 112345677777777776 7889999999999998754 2222222 56889999999 8889999999999
Q ss_pred HHHHhhhhccCCCC-----------------CCcccCccchH---------HHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 433 TLGRMFEFLHGSTL-----------------ETPIINQGNCQ---------QIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 433 ~l~~l~~~~~~~~~-----------------~~~~~~~~~~~---------~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
+++++......... +.+....++.. ..+|.|+..+.. ++.++..|+|+|.+++
T Consensus 444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA 523 (810)
T 3now_A 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523 (810)
T ss_dssp HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 99999984311000 00000001111 467888888875 6899999999999997
Q ss_pred HhcccCCCCCCCCchhH--HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC--cH-HHHHHHHHHHHHHHHHH
Q 002876 486 QGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE--TA-PMVMQLVPLIMMELHQT 560 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~l--~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~--~~-~~~~~l~~~l~~~l~~~ 560 (872)
..- . ....+ ...++.|+..+.+. ++..+..+.++|..+....... +. ......+|++++.+..
T Consensus 524 ~d~-------~-~r~~Vv~~Gaip~Lv~LL~s~---~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~- 591 (810)
T 3now_A 524 GLK-------E-LRGKVVQEGGVKALLRMALEG---TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ- 591 (810)
T ss_dssp TSH-------H-HHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST-
T ss_pred CCH-------H-HHHHHHHCCCHHHHHHHHccC---CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC-
Confidence 531 1 11111 13567777777665 4567889999999988654321 11 1123467777766531
Q ss_pred HhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 002876 561 LEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640 (872)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 640 (872)
+.+.. .+..++.+|..++.. .+.....+. -...++.+..++.+.+..++..|..++++++..-.
T Consensus 592 -------~~~~l----~~~eAl~AL~NLa~~---~d~~~~~Ii--~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 592 -------DCTAL----ENFESLMALTNLASM---NESVRQRII--KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp -------TSCHH----HHHHHHHHHHHHTTS---CHHHHHHHH--HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred -------CCcHH----HHHHHHHHHHHHhcC---CHHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence 11111 112356666666432 111111111 12467888889999999999999999999986332
Q ss_pred hhhHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccH--HHHHHHHHHHccCCCCCCCCchhHHHH
Q 002876 641 QDFLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSC 716 (872)
Q Consensus 641 ~~~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~ 716 (872)
....+. ...+|.|...++.. +..++..|+++|+.++...+......+ ...++.|+.++.++ +.+++..++++
T Consensus 656 -~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~--d~~vq~~A~~a 731 (810)
T 3now_A 656 -VIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP--SPAVQHRGIVI 731 (810)
T ss_dssp -HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS--SHHHHHHHHHH
T ss_pred -HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC--CHHHHHHHHHH
Confidence 233333 25889999988864 568999999999999875333222223 35788999999887 78899999999
Q ss_pred HHHHHHHhccchHHhHH--HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhh
Q 002876 717 FGDIALAIGENFEKYLM--YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQ 776 (872)
Q Consensus 717 l~~i~~~~~~~~~~~l~--~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 776 (872)
++.++... .....++- ..++.|...++.. |. ....+.+.+++++..++.
T Consensus 732 L~NL~~~s-~e~~~~l~e~G~i~~L~~LL~~~------d~----~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 732 ILNMINAG-EEIAKKLFETDIMELLSGLGQLP------DD----TRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHTTC-HHHHHHHHTSTHHHHHTTSCCCT------TS----TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-HHHHHHHHHCCCHHHHHHHHhCc------cc----CcHHHHHHHHHHHHHHHh
Confidence 99998743 33333333 3677777666433 10 013566667777777765
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.79 E-value=1.4e-16 Score=178.03 Aligned_cols=511 Identities=13% Similarity=0.101 Sum_probs=338.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhh
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~--~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
.++.++-+.+.++|...|+.|-..+--+... +.+.+...+...+. +.+..+|+++...+.++.+.
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~----------- 79 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQ--TDNLELKKLVYLYLMNYAKS----------- 79 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTS--SSCHHHHHHHHHHHHHHHHH-----------
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccc-----------
Confidence 4677777788889988888888888654433 44555666667655 44799999999888876541
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002876 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (872)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~ 160 (872)
.++....+.+.+.+.|.++|+.+|..|..+++.+. .+ ..++.+++.+.+++.++++.+|..|..++..++.
T Consensus 80 -----~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~-~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~ 150 (591)
T 2vgl_B 80 -----QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD-KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD 150 (591)
T ss_dssp -----SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG-GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred -----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 24444455678888899999999988877776664 23 4778899999999999999999999999999998
Q ss_pred hccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhh--ccChhhHHHHHHHHHHhhcCCCHHHHHH
Q 002876 161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN--FSNDMERDYIMRVVCEATLSPEVKIRQA 238 (872)
Q Consensus 161 ~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~r~~ 238 (872)
.. |+.+ . . ..+++.+...+. |+++.|+..|+.+++.+....++. +.. ....+..+...+.+.++..+..
T Consensus 151 ~~-p~~~-~-~-~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~~~~~~~~~~l---~~~~~~~Ll~~l~~~~~~~q~~ 221 (591)
T 2vgl_B 151 IN-AQMV-E-D-QGFLDSLRDLIA--DSNPMVVANAVAALSEISESHPNSNLLDL---NPQNINKLLTALNECTEWGQIF 221 (591)
T ss_dssp SS-CCCH-H-H-HHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTTSCCSCCSCCC---HHHHHHHHHHHHHHCCHHHHHH
T ss_pred hC-hhhc-c-c-ccHHHHHHHHhC--CCChhHHHHHHHHHHHHHhhCCCccchhc---cHHHHHHHHHcCCCCCchHHHH
Confidence 65 6655 1 1 467888888888 899999999999999976543322 111 1233444444455567777777
Q ss_pred HHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhh
Q 002876 239 AFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL 318 (872)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (872)
+++.+..+....+ +....+++.+...+++.++.++..|+.++..+.... + .....++...
T Consensus 222 il~~l~~l~~~~~----~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~------------~----~~~~~~~~~~ 281 (591)
T 2vgl_B 222 ILDCLSNYNPKDD----REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL------------P----KDSDYYNMLL 281 (591)
T ss_dssp HHHHHHTSCCCSH----HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC------------C----BTTBSHHHHH
T ss_pred HHHHHHHhCCCCh----HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc------------C----CCHHHHHHHH
Confidence 7776654432211 234567777777778888899999998887764200 0 0012233334
Q ss_pred hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCC
Q 002876 319 PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGP 398 (872)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~ 398 (872)
..+.+.++..+. .+ .++|..|..++..+....++.+.+++..++ ... ++++.+|..++..+..++...
T Consensus 282 ~~~~~~L~~L~~---~d-------~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-~~~-~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 282 KKLAPPLVTLLS---GE-------PEVQYVALRNINLIVQKRPEILKQEIKVFF-VKY-NDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp HHTHHHHHHHTT---SC-------HHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-CCT-TSCHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHhc---CC-------ccHHHHHHHHHHHHHHhChHHHHHHHHhhe-ecc-CChHHHHHHHHHHHHHHCChh
Confidence 455555554332 11 378999999999998877665544443322 122 334899999998888877543
Q ss_pred CCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHH
Q 002876 399 SPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKA 477 (872)
Q Consensus 399 ~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a 477 (872)
+ +..+++.+...+ .+.++.+|..++++++.++..++ .....+++.+++.+.+ ...++..+
T Consensus 350 n-------v~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~-----------~~~~~~v~~Ll~ll~~~~~~v~~e~ 410 (591)
T 2vgl_B 350 N-------IAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVE-----------QSAERCVSTLLDLIQTKVNYVVQEA 410 (591)
T ss_dssp T-------HHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred h-------HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhCh-----------hHHHHHHHHHHHHHcccchHHHHHH
Confidence 2 456778888888 99999999999999999998763 2345677888888876 57788888
Q ss_pred HHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHH
Q 002876 478 CGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL 557 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 557 (872)
..++..++...+ ... ..+++.+...+.+.. ++.++..+++++|......+. ...++..+++.+
T Consensus 411 i~~l~~ii~~~p------~~~----~~~v~~L~~~l~~~~--~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~ 473 (591)
T 2vgl_B 411 IVVIRDIFRKYP------NKY----ESIIATLCENLDSLD--EPDARAAMIWIVGEYAERIDN-----ADELLESFLEGF 473 (591)
T ss_dssp HHHHHHHHHHSC------SSC----CTTHHHHHHTTTTCC--SHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTC
T ss_pred HHHHHHHHHHCc------chH----HHHHHHHHHHHHhcc--CHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhh
Confidence 888888887653 211 233455566665443 567788888888876555432 122233332221
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHH-hc-cccchhhHHHHHHHHH
Q 002876 558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVF-AI-RSATAHEEAMLAIGAL 635 (872)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l-~~-~~~~~~~~a~~~l~~l 635 (872)
. .+++ .++..++.++..+....+.. . .+.+..+++.. .+ .+.++|+.|...+.-+
T Consensus 474 ~---------~~~~----~vr~~~l~a~~Kl~~~~p~~------~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 474 H---------DEST----QVQLTLLTAIVKLFLKKPSE------T----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp S---------SSCH----HHHHHHHHHHHHHHTTCCST------T----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred c---------cCCH----HHHHHHHHHHHHHHhcCchH------H----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 1 1122 35556777777766544322 1 23444444443 33 5668998887655443
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.78 E-value=7.7e-15 Score=163.55 Aligned_cols=650 Identities=9% Similarity=0.059 Sum_probs=399.3
Q ss_pred CChhHHHHHHHHHHHhhhhcc-cc-ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHH
Q 002876 143 LPPHTKQATLETLGYICEEVS-SD-AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (872)
Q Consensus 143 ~~~~~r~~al~~l~~i~~~~~-~~-~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (872)
.+...|+.|++=|-.++++-. .+ .+ +... +..+.+.+.+ ..++++..+|++++..++..-..-... .....=
T Consensus 20 ~~~~~~~~a~~nl~vl~re~aga~~i~-~~~~---~~~~~~l~~~-~~~~~~~~~~~r~~~~~~~~~~~r~~~-~~~~~~ 93 (810)
T 3now_A 20 TPIDKRRAAANNLVVLAKEQTGAELLY-KDHC---IAKVASLTKV-EKDQDIYVNMVHLVAALCENSVERTKG-VLTELG 93 (810)
T ss_dssp CSSHHHHHHHHHHHHHSSCHHHHHHHH-HTTH---HHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCHHHHHH-HHHHSC
T ss_pred cCHHHHHHHHhhceeeeccccchHHHH-hCch---HHHHHHHHhc-cCchhHHHHHHHHHHHHHhccHHHHHH-HHHHcC
Confidence 355778888888877776531 11 22 2222 2344444442 478999999999999987532111000 000000
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh------------hH---hhHHHHHHHHHHHHhcC--ChhhHHHHHHH
Q 002876 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEK------------LA---PYIQDIFNITAKAVRED--EEPVALQAIEF 283 (872)
Q Consensus 221 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~------------~~---~~~~~l~~~~~~~~~~~--~~~v~~~a~~~ 283 (872)
.+.+...+..++++.-.+++.++..++.....- +. ..+..++..++..+.+. ....|..++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~ 173 (810)
T 3now_A 94 VPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIEL 173 (810)
T ss_dssp HHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHH
Confidence 234455566678888888888888888765411 11 22456677777777653 34577888887
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCchH-hHHH-hhhhhHHHHHHHHHhcccCC--cccCCccchHhHHHHHHHHHHHHH
Q 002876 284 WSSVCDEEIDILEEYGGDFSGDSDIPCF-YFIK-HALPVLVPLLLETLLKQEED--QDQDEGAWNIAMAGGTCLGLVART 359 (872)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~~l~~~l~~~l~~~~~d--~~~~~~~~~~r~~a~~~l~~l~~~ 359 (872)
+...+... +.... .+.. .-+..+ +..-+...+- +..-.-.-+.|..+.-|+.++-+.
T Consensus 174 ~~~~~~~~---------------~~~~~~~~~~~~g~~~~----l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~ 234 (810)
T 3now_A 174 ITRNVHYT---------------ALEWAERLVEIRGLCRL----LDVCSELEDYKYESAMDITGSSSTIASVCLARIYEN 234 (810)
T ss_dssp HHHHTTCT---------------TTTHHHHHHHTTHHHHH----HHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhCCcc---------------ccccccchhhHhhHHHH----HHHHhcCccccccccCCCChhHHHHHHHHHHHHHHH
Confidence 66554210 00000 1111 112222 2222222221 111112337788888999988887
Q ss_pred cC-----CcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHHhccCCcHHHHHHHHH
Q 002876 360 VG-----DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAW 432 (872)
Q Consensus 360 ~~-----~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~ 432 (872)
.+ +.+...+-.++...+...+...+--+..++..+..+.. +.....+ ...++.++..+ .++++.++..|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~-~~~~~~~~~~G~v~~li~Ll-~s~~~~~q~~A~~ 312 (810)
T 3now_A 235 MYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPL-DVGNQVVAREGILQMILAMA-TTDDELQQRVACE 312 (810)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSH-HHHHHHHHTTTHHHHHHHHH-HSSCHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCH-HHHHHHHhccchHHHHHHHh-CCCCHHHHHHHHH
Confidence 65 33344455666666766666666777889999988863 3222222 46788899999 9999999999999
Q ss_pred HHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCc-hhHHHHHHHHH
Q 002876 433 TLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLT-PFFQEIVQALL 510 (872)
Q Consensus 433 ~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~l~~i~~~l~ 510 (872)
+++..+..-. ........-++.|...+.+ ++.+|..|.++|.++....... .....+. .-+..+++.+.
T Consensus 313 al~~aa~~~~--------~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d-~~~~~~~~g~i~~Lv~~l~ 383 (810)
T 3now_A 313 CLIAASSKKD--------KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQD-AAIRPFGDGAALKLAEACR 383 (810)
T ss_dssp HHHHHTTSHH--------HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTT-TSCCSSTTTHHHHHHHHHH
T ss_pred HHHHHcCCcH--------HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccC-ccccchhhccHHHHHHHHH
Confidence 9999877531 1223333334778887765 5788888888888886432211 0112222 23678888898
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHH-HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 002876 511 TVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVII 589 (872)
Q Consensus 511 ~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 589 (872)
+.+.++.. ++.++..++++|.++.........-.. ...+|.+++.+.. +++ .++..+..+|..++
T Consensus 384 ~lL~~~~~-d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s---------~d~----~i~~~al~~L~NLt 449 (810)
T 3now_A 384 RFLIKPGK-DKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG---------GNQ----SCLYGVVTTFVNLC 449 (810)
T ss_dssp HHHHCSSC-CSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT---------TCG----GGHHHHHHHHHHHT
T ss_pred HHhcCCCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC---------CCh----HHHHHHHHHHHHHc
Confidence 88877622 467888999999999776543221111 4677888877753 111 23345677777776
Q ss_pred HHhCCCc----------------------chhhHhh----HhH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhh
Q 002876 590 QKLGSSE----------------------QTKYVFM----QYA-DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQD 642 (872)
Q Consensus 590 ~~l~~~~----------------------~~~~~~~----~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 642 (872)
......+ ...+... ..+ ...++.+.+++.++++.+++.|..+|++++.. ..
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d--~~ 527 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL--KE 527 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS--HH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HH
Confidence 5221000 0000011 111 14688899999999999999999999999843 22
Q ss_pred hHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccc-c-c-cHHHHHHHHHHHccCCCCCCCCchhHHHHH
Q 002876 643 FLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKI-L-P-YCDGIMTQLLKDLSSNQLHRSVKPPIFSCF 717 (872)
Q Consensus 643 ~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~-~-~-~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l 717 (872)
....+ ...+|.|+..+.+. +...+..|.++|+.++....+.. . . .....++.|+.++..+. +...+..+++++
T Consensus 528 ~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~~~eAl~AL 605 (810)
T 3now_A 528 LRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC-TALENFESLMAL 605 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC-cHHHHHHHHHHH
Confidence 33333 24788999988765 44789999999999987643221 1 1 12457899999987542 222345689999
Q ss_pred HHHHHHhccchHHhHH-HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccch--HHH
Q 002876 718 GDIALAIGENFEKYLM-YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYA--PHI 794 (872)
Q Consensus 718 ~~i~~~~~~~~~~~l~-~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~i 794 (872)
+.++....+.-...++ ..+|.|...+... + ..+|+.++.++..+... ++....+. ...
T Consensus 606 ~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~------~-------~~Vq~~A~~~L~NLa~~------~~~~~~~v~~~g~ 666 (810)
T 3now_A 606 TNLASMNESVRQRIIKEQGVSKIEYYLMED------H-------LYLTRAAAQCLCNLVMS------EDVIKMFEGNNDR 666 (810)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSC------C-------TTHHHHHHHHHHHHTTS------HHHHHHHHSSSSH
T ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHcCC------C-------HHHHHHHHHHHHHHhCC------hHHHHHHHhccCc
Confidence 9988643222112222 3567777776544 1 25778888888888753 12222333 247
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002876 795 LQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868 (872)
Q Consensus 795 ~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 868 (872)
++.+..++.. .+.+++..|..+++.++..........+....+++.++. +..+.++++++.|.|+..-+..
T Consensus 667 l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~-LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 667 VKFLALLCED--EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT-LIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHGGGC--SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH-HHCCCCHHHHHHHHHHHHHHHh
Confidence 7888888875 588999999999999998543444444442336777776 4557899999999999987754
No 27
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.76 E-value=4e-15 Score=166.22 Aligned_cols=440 Identities=14% Similarity=0.127 Sum_probs=310.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhc--CCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVN--DEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
-+..++..+.++|..+|+.+.-.+..+.+.+ ++......+.+.. .+.++.+|..|+..|.+..
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------------- 114 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------------- 114 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--------------
Confidence 3566777778899999999999999887754 4444434444321 1458899999988887643
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCch--hHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP--ELIGALLSNIHQLPPHTKQATLETLGYIC 159 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~--~l~~~l~~~l~~~~~~~r~~al~~l~~i~ 159 (872)
+++....+.+.+.+++.|+++.||+.|+.++..++... | +.++ ++++.+.+.+.++++.++.+|+.++..++
T Consensus 115 ----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 115 ----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-A-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp ----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-C-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-h-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 35566677888999999999999999999999999865 5 4665 58999999999999999999999999998
Q ss_pred hhccccc-cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHH
Q 002876 160 EEVSSDA-VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQA 238 (872)
Q Consensus 160 ~~~~~~~-l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~ 238 (872)
... ++. . .......+..+++.+. +.++-.+...++++..+. +. .......+++.+...+++.++.++..
T Consensus 189 ~~~-~~~~~-~~l~~~~~~~Ll~~l~--~~~~~~q~~il~~l~~l~---~~---~~~~~~~~l~~l~~~l~~~~~~V~~e 258 (591)
T 2vgl_B 189 ESH-PNSNL-LDLNPQNINKLLTALN--ECTEWGQIFILDCLSNYN---PK---DDREAQSICERVTPRLSHANSAVVLS 258 (591)
T ss_dssp TSC-CSCCS-CCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHHTSC---CC---SHHHHHHHHHHHTTCSCSSTTHHHHH
T ss_pred hhC-CCccc-hhccHHHHHHHHHcCC--CCCchHHHHHHHHHHHhC---CC---ChHHHHHHHHHHHHHHcCCChHHHHH
Confidence 875 433 1 1233444555555555 567778888888776643 21 11223568888888889999999999
Q ss_pred HHHHHHHHHHH---hHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHH
Q 002876 239 AFECLVAISST---YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK 315 (872)
Q Consensus 239 ~~~~l~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (872)
|+.++..+... .++.+......+.+.+.... +.+.++|..++..+..++...+ ..+.
T Consensus 259 a~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-------------------~~~~ 318 (591)
T 2vgl_B 259 AVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-------------------EILK 318 (591)
T ss_dssp HHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-------------------STTT
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-------------------HHHH
Confidence 99999887642 23333333445555554433 4778999999999888876321 1111
Q ss_pred hhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhh
Q 002876 316 HALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSIL 395 (872)
Q Consensus 316 ~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~ 395 (872)
+++..+ ++. .+ ++ +++|..+.+.+..+ ..+.-+..+++.+.+++.+.++..|..++.+++.++
T Consensus 319 ~~~~~~-------~~~-~~-----d~-~~Ir~~al~~L~~l---~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la 381 (591)
T 2vgl_B 319 QEIKVF-------FVK-YN-----DP-IYVKLEKLDIMIRL---ASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCA 381 (591)
T ss_dssp TCTTTT-------SCC-TT-----SC-HHHHHHHHHHHHHT---CCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhh-------eec-cC-----Ch-HHHHHHHHHHHHHH---CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 111111 111 01 11 68887666555443 344456677888888888889999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--ChhH
Q 002876 396 EGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNV 473 (872)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v 473 (872)
... .+....+++.+...+ .+....++..+..+++.+....+. .. ..+++.+...+.+ .+.+
T Consensus 382 ~~~-----~~~~~~~v~~Ll~ll-~~~~~~v~~e~i~~l~~ii~~~p~-------~~----~~~v~~L~~~l~~~~~~~~ 444 (591)
T 2vgl_B 382 IKV-----EQSAERCVSTLLDLI-QTKVNYVVQEAIVVIRDIFRKYPN-------KY----ESIIATLCENLDSLDEPDA 444 (591)
T ss_dssp TTC-----HHHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHSCS-------SC----CTTHHHHHHTTTTCCSHHH
T ss_pred HhC-----hhHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHCcc-------hH----HHHHHHHHHHHHhccCHHH
Confidence 764 344577888889999 999999999999999998887642 22 2455666777764 5889
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCc
Q 002876 474 AEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDET 542 (872)
Q Consensus 474 ~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~ 542 (872)
+..++|+++.++... +..+.+++.+++.+... ++.+|..++.++..+....+...
T Consensus 445 ~~~~~wilGey~~~~-----------~~~~~~l~~l~~~~~~~---~~~vr~~~l~a~~Kl~~~~p~~~ 499 (591)
T 2vgl_B 445 RAAMIWIVGEYAERI-----------DNADELLESFLEGFHDE---STQVQLTLLTAIVKLFLKKPSET 499 (591)
T ss_dssp HHHHHHHHHTTCTTC-----------TTHHHHHHHHSTTCSSS---CHHHHHHHHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHcccccc-----------cCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhcCchHH
Confidence 999999999885432 12456666666655543 56789899999988888776543
No 28
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.76 E-value=1.9e-13 Score=164.12 Aligned_cols=677 Identities=11% Similarity=0.060 Sum_probs=395.3
Q ss_pred CHHHHHHHHHHHHHHHhc----ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCCh----
Q 002876 16 DGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDS---- 87 (872)
Q Consensus 16 ~~~~r~~a~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~---- 87 (872)
+..+|++....+..+... +.|+++..|.+.+.. +...+..+..+|+..-.--. ......++.
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L~~l~eev~-------~~~~~~~~~~r~~ 182 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLSEEVF-------DFSAEQMTQAKAL 182 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHH-------TSCTTTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHHHH-------HhcchhhhhHHHH
Confidence 467888888888877655 456788888877742 45556666666655331000 000000111
Q ss_pred -------HHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhcCCC--CchhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002876 88 -------SVKAQIKSFILKTLSS-PAHDARSTASQVVAKVAGIELPHK--QWPELIGALLSNIHQLPPHTKQATLETLGY 157 (872)
Q Consensus 88 -------~~~~~i~~~ll~~l~~-~~~~vr~~~a~~l~~i~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~al~~l~~ 157 (872)
+....+.+.+.+++.+ ++..++..+..++..+.... +.+ .-+.+++.+.+.+. .++..|..|+.|+..
T Consensus 183 ~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi-~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~ 260 (1049)
T 3m1i_C 183 HLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI-PYRYIYETNILELLSTKFM-TSPDTRAITLKCLTE 260 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC-CHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHH
Confidence 1122333334444543 35678888887777654321 100 01345666654332 267889999999999
Q ss_pred hhhhccccc---cchhhHHHHHHHHHhcc----------------cCCCCCHHHHHHHHHHHHHhHhhchhhccC----h
Q 002876 158 ICEEVSSDA---VEQDHVNKILTAVVQGM----------------NASESNNDVRLAATRALYNALGFAQANFSN----D 214 (872)
Q Consensus 158 i~~~~~~~~---l~~~~~~~i~~~l~~~l----------------~~~~~~~~vr~~al~~l~~~~~~~~~~~~~----~ 214 (872)
++..--++. + ...+..+++.++..+ ...+.+.+.....++.+..+.......+.. .
T Consensus 261 i~~~~~~~~~~~~-~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 339 (1049)
T 3m1i_C 261 VSNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLR 339 (1049)
T ss_dssp HHHCCCCTTCHHH-HHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHhCCCCcchhhH-HHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhH
Confidence 887521221 1 122222222222211 111345556666666666554432222211 1
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh------HHhhHhhHHHHHHHHHHHHhcCCh--------------
Q 002876 215 MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY------YEKLAPYIQDIFNITAKAVREDEE-------------- 274 (872)
Q Consensus 215 ~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~------~~~~~~~~~~l~~~~~~~~~~~~~-------------- 274 (872)
.....+++.+......++.++...+++.|..+++.. ...+.+++..+++.++..+.-+++
T Consensus 340 ~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~ 419 (1049)
T 3m1i_C 340 ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1049)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHh
Confidence 112346677777666778899999999999988832 244567788888888876632110
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHh
Q 002876 275 --------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (872)
Q Consensus 275 --------~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (872)
..+..+.+++..++.. .-...++.+.+.+-+.+.. ....|..+
T Consensus 420 ~~~d~d~~~~~~~~~~~L~~l~~~----------------------~~~~~l~~v~~~l~~~l~~-------~~~~W~~~ 470 (1049)
T 3m1i_C 420 FVKESDTIQLYKSEREVLVYLTHL----------------------NVIDTEEIMISKLARQIDG-------SEWSWHNI 470 (1049)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH----------------------CHHHHHHHHHHHHHHHHTS-------SSCCHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHHHHhCC-------CCCCHHHH
Confidence 1122333344443321 1122233333444333321 12359999
Q ss_pred HHHHHHHHHHHHHcCC----cchhchHHHHHhhhc-----CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 002876 347 MAGGTCLGLVARTVGD----DIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTA 417 (872)
Q Consensus 347 ~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~~~-----~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~ 417 (872)
.++.-+++.++...++ ..++.+++.+..... ++...+|..++.+++.+++... .-.++++.+++.++..
T Consensus 471 eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~--~~~~~l~~vl~~ll~~ 548 (1049)
T 3m1i_C 471 NTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVILKLFEF 548 (1049)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH--HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence 9988888888765432 236667776655332 2345556567888887765432 1246789999999999
Q ss_pred hccCCcHHHHHHHHHHHHHhhhhccCCCC-CCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCC
Q 002876 418 LMQDPNNHVKDTTAWTLGRMFEFLHGSTL-ETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPS 495 (872)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~ 495 (872)
+ .|++++|+..|++++.++++..+.... ..+.....|++.++..+...+.+ +..-......+++.++...++ .
T Consensus 549 l-~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~----~ 623 (1049)
T 3m1i_C 549 M-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS----V 623 (1049)
T ss_dssp T-TSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS----H
T ss_pred h-cCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC----H
Confidence 9 999999999999999999997642100 00011137888888888877765 444456777888888876421 1
Q ss_pred CCCchhHHHHHHHHHHhhcc--------CCc-hhh-hhH--HHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHh-
Q 002876 496 SPLTPFFQEIVQALLTVTHR--------EDA-GES-RLR--TAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE- 562 (872)
Q Consensus 496 ~~l~~~l~~i~~~l~~~l~~--------~~~-~~~-~v~--~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~- 562 (872)
....+|+..+++.+...+.. .+. .++ .++ ...+.++..++...|..+.|++..+++.++..+.....
T Consensus 624 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~~ 703 (1049)
T 3m1i_C 624 AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSM 703 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556776666655433221 100 011 112 24567788888999999999888888777655443211
Q ss_pred ------hhcC-ChhHHHH--HHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchh-hHHHHHH
Q 002876 563 ------AQKL-SSDEREK--QNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAH-EEAMLAI 632 (872)
Q Consensus 563 ------~~~~-~~~~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~-~~a~~~l 632 (872)
..+. ....+.. ...+...+...+..+..... .....+.++.+++++.++..++......| ..++.++
T Consensus 704 ~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~---~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~ 780 (1049)
T 3m1i_C 704 ISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR---NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCM 780 (1049)
T ss_dssp HHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS---CHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHH
T ss_pred HHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHH
Confidence 0000 0001111 11222233344444444331 11123457778888888777664322212 4688999
Q ss_pred HHHHHHhhhhhHhhhHHHHHHHHhhh----c--CCChhhHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHHHHccC
Q 002876 633 GALAYATGQDFLKYMPEFYKYVEMGL----Q--NFEDYQVCAITVGVVGDLCRALEDKILP----YCDGIMTQLLKDLSS 702 (872)
Q Consensus 633 ~~l~~~~~~~~~~~~~~i~~~l~~~l----~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~~~l~~ 702 (872)
+.++..+|..+.+|++.+++.+.... + -.+.+++|...+.+++.++.+++..+.+ .+..+++..+..+..
T Consensus 781 ~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~ 860 (1049)
T 3m1i_C 781 TTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKH 860 (1049)
T ss_dssp HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999998888777653 2 1346799999999999999988765543 245677777778877
Q ss_pred CCCCCCCchhHHHHHHHHHHHhcc----c-----hHHhHHHHHHHHHHHHhhc
Q 002876 703 NQLHRSVKPPIFSCFGDIALAIGE----N-----FEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 703 ~~~~~~v~~~~~~~l~~i~~~~~~----~-----~~~~l~~il~~l~~~l~~~ 746 (872)
+ ++.+...++.++..+....+. . +..|...++..++..+.+.
T Consensus 861 ~--~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~ 911 (1049)
T 3m1i_C 861 N--NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDS 911 (1049)
T ss_dssp C--SHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred C--CchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6 677888889988888775431 1 2345566666666666554
No 29
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.75 E-value=7.1e-13 Score=154.74 Aligned_cols=673 Identities=11% Similarity=0.087 Sum_probs=396.8
Q ss_pred HHHHHHHHHHHHHHHhc----ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc--cCCChHHH
Q 002876 17 GTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW--LSLDSSVK 90 (872)
Q Consensus 17 ~~~r~~a~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~--~~l~~~~~ 90 (872)
.-+|++..+.+..+... +.|+++..+.+.+.+ ++..+..+..+|+....-- ..+ ..++..-+
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~EEV---------~~~~~~~l~~~r~ 181 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLSEEV---------FDFSAEQMTQAKA 181 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHH---------HTSCTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHH---------HHhhhccchHHHH
Confidence 44666677777766554 456788878777654 3455666666665533210 001 11222222
Q ss_pred HH-----------HHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhcCCC--CchhHHHHHH-HhhcCCChhHHHHHHHHH
Q 002876 91 AQ-----------IKSFILKTLSS-PAHDARSTASQVVAKVAGIELPHK--QWPELIGALL-SNIHQLPPHTKQATLETL 155 (872)
Q Consensus 91 ~~-----------i~~~ll~~l~~-~~~~vr~~~a~~l~~i~~~~~~~~--~~~~l~~~l~-~~l~~~~~~~r~~al~~l 155 (872)
.. +.+.+.+.+.+ .++.+...+-+++.....-. |-+ .-+.+++.++ ..+. ++..|..|+.|+
T Consensus 182 ~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI-~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL 258 (1023)
T 4hat_C 182 LHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI-PYRYIYETNILELLSTKFMT--SPDTRAITLKCL 258 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC-CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 22 22333334433 35666666667766655311 200 0145788888 6664 467999999999
Q ss_pred HHhhhh-cccc--ccchhhHHHHHHHHHhcc---------------c-CCCCCHHHHHHHHHHHHHhHhhchhhccChhh
Q 002876 156 GYICEE-VSSD--AVEQDHVNKILTAVVQGM---------------N-ASESNNDVRLAATRALYNALGFAQANFSNDME 216 (872)
Q Consensus 156 ~~i~~~-~~~~--~l~~~~~~~i~~~l~~~l---------------~-~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 216 (872)
..++.. ..++ .+ ...+..+++.++..+ . .++.+.+....-.+.+..+.+.....+.....
T Consensus 259 ~eIv~~~~~~~~~~~-~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~ 337 (1023)
T 4hat_C 259 TEVSNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDES 337 (1023)
T ss_dssp HHHHTSCCCSSCHHH-HHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGG
T ss_pred HHHHccccCCchHHH-HHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999873 2112 12 222333333222111 1 11234555555555555554432222222111
Q ss_pred -HH---HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH------HhhHhhHHHHHHHHHHHHhcCCh---------hh-
Q 002876 217 -RD---YIMRVVCEATLSPEVKIRQAAFECLVAISSTYY------EKLAPYIQDIFNITAKAVREDEE---------PV- 276 (872)
Q Consensus 217 -~~---~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~------~~~~~~~~~l~~~~~~~~~~~~~---------~v- 276 (872)
.+ ..+..+......++.++-..+++.|..+.+..+ ..+.+++..+++.++..+.-+++ +.
T Consensus 338 ~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~ 417 (1023)
T 4hat_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIV 417 (1023)
T ss_dssp GHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEE
T ss_pred hhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHH
Confidence 22 224466666667789999999999999987543 23567777888888877654331 00
Q ss_pred -----------HHHHH-HHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccch
Q 002876 277 -----------ALQAI-EFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWN 344 (872)
Q Consensus 277 -----------~~~a~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~ 344 (872)
....+ +++..++.- .-...++.+++.+.+.+.. .+..|.
T Consensus 418 ~e~~~d~d~~~~f~~~Rd~L~~l~~l----------------------~~~~~~~~~~~~l~~~l~~-------~~~~W~ 468 (1023)
T 4hat_C 418 REFVKESDTIQLYKSEREVLVYLTHL----------------------NVIDTEEIMISKLARQIDG-------SEWSWH 468 (1023)
T ss_dssp ECSSCCGGGHHHHHHHHHHHHHHHHH----------------------CHHHHHHHHHHHHHHHHSS-------TTCCHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHhcc----------------------CHHHHHHHHHHHHHHHhcC-------CCCCHH
Confidence 00000 111111110 0012222233333333221 123599
Q ss_pred HhHHHHHHHHHHHHHcC----CcchhchHHHHHhhhc-----CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 002876 345 IAMAGGTCLGLVARTVG----DDIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFML 415 (872)
Q Consensus 345 ~r~~a~~~l~~l~~~~~----~~~~~~l~~~l~~~~~-----~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~ 415 (872)
.+.++.-+++.++.... +..+|.+++.+..... ++...+|.++++++|.+++.. ..-.++++.++..++
T Consensus 469 ~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl--~~~~~~L~~vl~~L~ 546 (1023)
T 4hat_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL--KAHWNFLRTVILKLF 546 (1023)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH--HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHH
Confidence 99999999999887653 2456777777766554 244567778889999877654 223567899999999
Q ss_pred HHhccCCcHHHHHHHHHHHHHhhhhccCCCCC-CcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCC
Q 002876 416 TALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE-TPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAIS 493 (872)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~ 493 (872)
.++ .+++++|..+|++++..+++.+...... .+.-...|++.++..+.+.+.. ++.-+..+..+++.++...+.
T Consensus 547 ~~l-~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~--- 622 (1023)
T 4hat_C 547 EFM-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS--- 622 (1023)
T ss_dssp HHT-TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS---
T ss_pred HHh-hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC---
Confidence 999 9999999999999999999976421100 0111246888888888887765 566677889999999987532
Q ss_pred CCCCCchhHHHHHHHHHHhhcc--------CCc----hhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHH
Q 002876 494 PSSPLTPFFQEIVQALLTVTHR--------EDA----GESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTL 561 (872)
Q Consensus 494 ~~~~l~~~l~~i~~~l~~~l~~--------~~~----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 561 (872)
......++..+++.+...++. +.. ...+.-...++++..++...|..+.+++..+++.+++......
T Consensus 623 -~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s 701 (1023)
T 4hat_C 623 -VAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS 701 (1023)
T ss_dssp -HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333555554444333221 100 0112223677888889999999999999999999988765542
Q ss_pred hh-------hcCChh-HH--HHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhh-HHHH
Q 002876 562 EA-------QKLSSD-ER--EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHE-EAML 630 (872)
Q Consensus 562 ~~-------~~~~~~-~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-~a~~ 630 (872)
+. .+.... .+ .....++..++..+...+.+... ...+...+++++++.++.-.....+..|+ .++.
T Consensus 702 ~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~---~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~ 778 (1023)
T 4hat_C 702 SMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARN---LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLN 778 (1023)
T ss_dssp HHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSC---HHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHH
T ss_pred HHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHH
Confidence 20 010000 01 11223344455555655554432 22334456777777777666655555554 5677
Q ss_pred HHHHHHHHhhhhhHhhhHHHHHHHHh----hhcC--CChhhHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHHHHc
Q 002876 631 AIGALAYATGQDFLKYMPEFYKYVEM----GLQN--FEDYQVCAITVGVVGDLCRALEDKILP----YCDGIMTQLLKDL 700 (872)
Q Consensus 631 ~l~~l~~~~~~~~~~~~~~i~~~l~~----~l~~--~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~~~l 700 (872)
+.+.++..+|..+.+.++.++..+.. ++++ .+.|+.|..-+.++..+...+...+.. ....+++.++-.+
T Consensus 779 l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~ 858 (1023)
T 4hat_C 779 CMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAF 858 (1023)
T ss_dssp HHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHc
Confidence 88889999998888888887776542 3332 345789999999999999888654433 4556777777788
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHhcc----ch-----HHhHHHHHHHHHHHHhhc
Q 002876 701 SSNQLHRSVKPPIFSCFGDIALAIGE----NF-----EKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 701 ~~~~~~~~v~~~~~~~l~~i~~~~~~----~~-----~~~l~~il~~l~~~l~~~ 746 (872)
+.+ ++++-..++..+..+...... .+ ..|.-.++.-++..+.+.
T Consensus 859 ~h~--~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 859 KHN--NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDS 911 (1023)
T ss_dssp TCC--CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCC--chHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 877 778888888888888765432 22 245555666666666554
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.72 E-value=4.4e-15 Score=170.91 Aligned_cols=525 Identities=11% Similarity=0.058 Sum_probs=323.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHH
Q 002876 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNK 174 (872)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~ 174 (872)
..+++.|.+++..+|..++..+......... ...++.|..++.++++.+|..|+.+|..++........ ....+.
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~-i~~~~~ 192 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-IMRSPQ 192 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHH-HTTCHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHH-HHhccC
Confidence 5678888899999999999888766443322 55777788888888899999999999999875311100 011235
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhh
Q 002876 175 ILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
+++.++..+.+ +.++.+|..|+.+|.++... ... .........++.+..+++++++.++..++.+|..++...+..-
T Consensus 193 ~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~-~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 193 MVSAIVRTMQN-TNDVETARCTSGTLHNLSHH-REG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTS-HHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred hHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCC-chh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 67777777763 45899999999999986532 111 1001113467888899999999999999999999998754432
Q ss_pred HhhH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhccc
Q 002876 255 APYI-QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (872)
Q Consensus 255 ~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (872)
.... ...++.++..+.+.+.+++..++.++..++....+. ...+.. ...++.++..+...+
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~---------------~~~i~~---~~~i~~Lv~lL~~~~ 331 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES---------------KLIILA---SGGPQALVNIMRTYT 331 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH---------------HHHHHT---TTHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH---------------HHHHHH---cCCHHHHHHHHhcCC
Confidence 2222 367888888888888788877777666555210000 001111 123566666554311
Q ss_pred CCcccCCccchHhHHHHHHHHHHHHHcC--Ccc-hhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 002876 334 EDQDQDEGAWNIAMAGGTCLGLVARTVG--DDI-VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIA 410 (872)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~-~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i 410 (872)
. ...+..+..++..++..-. ..+ -...++.+...+.+.+...+..++.++..++...... .....+
T Consensus 332 ~--------~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~ 400 (780)
T 2z6g_A 332 Y--------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGL 400 (780)
T ss_dssp C--------HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHH
T ss_pred H--------HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhH
Confidence 0 1334455666666664211 111 1234567777777777788888899999998765321 113568
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--C-hhHHHHHHHHHHHHHHh
Q 002876 411 LNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--V-PNVAEKACGALYFLAQG 487 (872)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~al~~l~~~ 487 (872)
++.+...+ .++++.+|..|+++++.++..... ....-.-...++.+++.+.+ + ..++..|+++|++++..
T Consensus 401 i~~Lv~lL-~~~d~~vr~~A~~aL~~L~~~~~~------~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 401 LGTLVQLL-GSDDINVVTCAAGILSNLTCNNYK------NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHH------HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHH------HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 88999999 999999999999999999874320 00000012356777777753 2 48999999999998642
Q ss_pred cccCCCCCCCCchh--HHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHH-HHHHHHHHHHHHHHHhhh
Q 002876 488 FEDAISPSSPLTPF--FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEAQ 564 (872)
Q Consensus 488 ~~~~~~~~~~l~~~--l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~ 564 (872)
... ....... -...++.|+..+...+ .+.++..++++|+.+....... .... ..+++.+++.+.......
T Consensus 474 ~~~----~~~~~~~v~~~~~l~~L~~lL~~~~--~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 474 HQD----AEMAQNAVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp STT----HHHHHHHHHHTTCHHHHHHTTSTTC--CHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred Cch----HHHHHHHHHHcCCHHHHHHHhcCCC--hHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhH
Confidence 110 0000000 1134677788887654 4578999999999998532221 2222 246677777665421100
Q ss_pred ------------cCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHH
Q 002876 565 ------------KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAI 632 (872)
Q Consensus 565 ------------~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l 632 (872)
....... ..++..++.+|..+.. .......+. -...++.+.+++.+.+..++..+..+|
T Consensus 547 ~~~aa~al~nq~~~~~~~~---~~v~~~a~~aL~~La~----~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~a~~aL 617 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRM---EEIVEACTGALHILAR----DIHNRIVIR--GLNTIPLFVQLLYSPIENIQRVAAGVL 617 (780)
T ss_dssp HHTTC------CCSTTCCH---HHHHHHHHHHHHHHTT----SHHHHHHHH--HTCCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHhhccccchhhcccCh---HHHHHHHHHHHHHHhc----ChhhHHHHH--HCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0000001 1344556677766642 110000011 123577888899998889999999999
Q ss_pred HHHHHHhhhhhHhhhHH--HHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 633 GALAYATGQDFLKYMPE--FYKYVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 633 ~~l~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
+.++.. ......+.. .++.|.+.+.+. +.++|..|.++|..++..-+
T Consensus 618 ~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~-~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 618 CELAQD--KEAAEAIEAEGATAPLTELLHSR-NEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHTS--HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcC--HHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCh
Confidence 988632 233334433 678888887754 56999999999999876443
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.70 E-value=2e-15 Score=164.59 Aligned_cols=399 Identities=12% Similarity=0.071 Sum_probs=270.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCc------hhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhccccc
Q 002876 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW------PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDA 166 (872)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~------~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~ 166 (872)
.+.+++.+.++++.+|..++.++..++..... ... +.+++.+++.++++ ++.+|..|+.++..++... ++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPN-PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQ 99 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSS-CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHH
Confidence 34577788889999999999999998763211 111 26899999999988 7899999999999988643 221
Q ss_pred cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 002876 167 VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVA 245 (872)
Q Consensus 167 l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~r~~~~~~l~~ 245 (872)
...-.-...++.+.+.+. ++++.+|..|+.+|.++....+..-. ......+++.+..++.+ +++.+|..++.+|..
T Consensus 100 ~~~~~~~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHHHHH-HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 100112457888888888 78999999999999997753221100 00012356777777774 789999999999999
Q ss_pred HHHHh-HHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHH
Q 002876 246 ISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL 324 (872)
Q Consensus 246 l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 324 (872)
++... +..-......+++.+...+.+.+++++..++.++..++....+. ...+ .-..++|.
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~----------------~~~~--~~~~~i~~ 238 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK----------------IQAV--IDAGVCRR 238 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH----------------HHHH--HHTTTHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH----------------HHHH--HHcCcHHH
Confidence 98654 32212233566777777788888899999998888887521110 0001 11235677
Q ss_pred HHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC---cch-hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCC
Q 002876 325 LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSP 400 (872)
Q Consensus 325 l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~ 400 (872)
++..+.. .++.++..|..+|..++...+. .++ ..+++.+.+.+.++++.+|..++.+++.++.+..
T Consensus 239 L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~- 308 (450)
T 2jdq_A 239 LVELLMH---------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR- 308 (450)
T ss_dssp HHHHTTC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHHHCC---------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-
Confidence 7776642 1257888888888887653211 111 2466777788888899999999999999997642
Q ss_pred CcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccc-hHHHHHHHHHhccC-ChhHHHHH
Q 002876 401 EKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN-CQQIISVLLQSMKD-VPNVAEKA 477 (872)
Q Consensus 401 ~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d-~~~v~~~a 477 (872)
......+ ..+++.++..+ .++++.+|..+++++++++.... +...... -..+++.++..+.+ +++++..+
T Consensus 309 ~~~~~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 381 (450)
T 2jdq_A 309 AQIQTVIDANIFPALISIL-QTAEFRTRKEAAWAITNATSGGS------AEQIKYLVELGCIKPLCDLLTVMDSKIVQVA 381 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCC------HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 3333333 36788999999 99999999999999999987531 0011111 13478888888886 68999999
Q ss_pred HHHHHHHHHhcccCC-CCCCCCchhHHHH-----HHHHHHhhccCCchhhhhHHHHHHHHHHHH
Q 002876 478 CGALYFLAQGFEDAI-SPSSPLTPFFQEI-----VQALLTVTHREDAGESRLRTAAYETLNEVV 535 (872)
Q Consensus 478 ~~al~~l~~~~~~~~-~~~~~l~~~l~~i-----~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~ 535 (872)
+++|.+++...+... .....+.+|...+ ++.+.....++ ++.++..++.++..+.
T Consensus 382 ~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~---~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 382 LNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE---NQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHC
Confidence 999999987643100 0012345666665 45555544433 5667777777776655
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.70 E-value=1.8e-15 Score=165.07 Aligned_cols=365 Identities=13% Similarity=0.132 Sum_probs=247.4
Q ss_pred CCchhH---HHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHH--HHHHHHHhcccCCCC-CHHHHHHHHHHH
Q 002876 127 KQWPEL---IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVN--KILTAVVQGMNASES-NNDVRLAATRAL 200 (872)
Q Consensus 127 ~~~~~l---~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~--~i~~~l~~~l~~~~~-~~~vr~~al~~l 200 (872)
..|++. ++.+++.++++++.+|..|+..+..++........ ..... .+++.+++.+. +. ++.+|..|+.++
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~--~~~~~~v~~~a~~~L 89 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLK--RKENCTLQFESAWVL 89 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHT--CTTCHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHC--CCCCHHHHHHHHHHH
Confidence 589888 99999999999999999999999988652212222 22222 57888888888 45 899999999999
Q ss_pred HHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH-HHHHHHHHHHHhc-CChhhHH
Q 002876 201 YNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVRE-DEEPVAL 278 (872)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~-~~~~v~~ 278 (872)
..+....+.... .......++.+..+++++++.+|..++.+|..++...+..-...+ ..+++.+...+.+ .+.+++.
T Consensus 90 ~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~ 168 (450)
T 2jdq_A 90 TNIASGNSLQTR-IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTR 168 (450)
T ss_dssp HHHHSSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHH
T ss_pred HHHhcCCHHHHH-HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHH
Confidence 997753221110 001134788888899999999999999999999886543222222 2467777777775 6789999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHH
Q 002876 279 QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358 (872)
Q Consensus 279 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~ 358 (872)
.++.++..++... ... .. ......++|.++..+.. + +..++..+..+|..++.
T Consensus 169 ~a~~~L~~l~~~~-----------~~~---~~----~~~~~~~l~~L~~~l~~--~-------~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 169 NAVWALSNLCRGK-----------SPP---PE----FAKVSPCLNVLSWLLFV--S-------DTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHHHHHHCCS-----------SSC---CC----GGGTGGGHHHHHHHTTC--C-------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCC-----------CCC---CC----HHHHHHHHHHHHHHHcc--C-------CHHHHHHHHHHHHHHHC
Confidence 9999998887411 000 00 12234567777776642 1 13677777888877765
Q ss_pred HcCC---c-chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHH
Q 002876 359 TVGD---D-IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWT 433 (872)
Q Consensus 359 ~~~~---~-~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~ 433 (872)
..++ . ....+++.+.+.+.+++|.+|..++.+++.++.+.. ......+ ..+++.+...+ .++++.+|..|+++
T Consensus 222 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 222 GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD-IQTQVILNCSALQSLLHLL-SSPKESIKKEACWT 299 (450)
T ss_dssp SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh-HHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHH
Confidence 3211 0 112356666677778899999999999999987652 2111122 35788999999 99999999999999
Q ss_pred HHHhhhhccCCCCCCcccCccch-HHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH-HHHHHHHH
Q 002876 434 LGRMFEFLHGSTLETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF-QEIVQALL 510 (872)
Q Consensus 434 l~~l~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l-~~i~~~l~ 510 (872)
+++++...+. .....+ ..+++.++..+.+ ++.+|..|+++|.+++.... +......+ ..+++.++
T Consensus 300 L~~l~~~~~~-------~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~l~~~~~i~~L~ 367 (450)
T 2jdq_A 300 ISNITAGNRA-------QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS-----AEQIKYLVELGCIKPLC 367 (450)
T ss_dssp HHHHTTSCHH-------HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCHH-------HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHCCCHHHHH
Confidence 9999874321 111122 2577888888875 68999999999999987521 11111122 24788888
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHHccc
Q 002876 511 TVTHREDAGESRLRTAAYETLNEVVRCST 539 (872)
Q Consensus 511 ~~l~~~~~~~~~v~~~~~~~l~~l~~~~~ 539 (872)
..+.+. ++.++..+++++..++...+
T Consensus 368 ~ll~~~---~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 368 DLLTVM---DSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HGGGSS---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHhch
Confidence 888765 57899999999999987654
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.69 E-value=4e-16 Score=173.38 Aligned_cols=404 Identities=12% Similarity=0.100 Sum_probs=272.4
Q ss_pred HHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCc-HHHHHHHHHHHHHhhhhccCCCC
Q 002876 369 MPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPN-NHVKDTTAWTLGRMFEFLHGSTL 446 (872)
Q Consensus 369 ~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~~~ 446 (872)
+|.+.+.+.++++..|..|+.++..++...........+ ..++|.++..+ .+++ +.+|..|+++|++++...+.
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~v~~~A~~~L~~l~~~~~~--- 151 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFL-TREDFPQLQFEAAWALTNIASGTSE--- 151 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHH-TCTTCHHHHHHHHHHHHHHHTSCHH---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHhCCCHH---
Confidence 455556667788999999999999997764312222222 45788899999 8776 99999999999999985321
Q ss_pred CCcccCccch-HHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHH--HHHHHHHHhhccCCchhhh
Q 002876 447 ETPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDAGESR 522 (872)
Q Consensus 447 ~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~--~i~~~l~~~l~~~~~~~~~ 522 (872)
...... ...++.++..+.+ ++.++..|+++|.+++.... .....+- ..++.++..+.... ++.
T Consensus 152 ----~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~i~~~g~l~~Ll~lL~~~~--~~~ 218 (528)
T 4b8j_A 152 ----NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-------KCRDLVLANGALLPLLAQLNEHT--KLS 218 (528)
T ss_dssp ----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-------HHHHHHHHTTCHHHHHHTCCTTC--CHH
T ss_pred ----HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHCCcHHHHHHHHhcCC--CHH
Confidence 111111 2478889998886 68999999999999986421 1111121 25777788884433 578
Q ss_pred hHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHh
Q 002876 523 LRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF 602 (872)
Q Consensus 523 v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 602 (872)
++..+.++|..+....+..........+|.++..+.. .+. .++..++.+|..+..... ...
T Consensus 219 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~---------~~~----~v~~~a~~aL~~l~~~~~------~~~ 279 (528)
T 4b8j_A 219 MLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS---------NDE----EVLTDACWALSYLSDGTN------DKI 279 (528)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC---------CCH----HHHHHHHHHHHHHTSSCH------HHH
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC---------CCH----HHHHHHHHHHHHHHcCCH------HHH
Confidence 8999999999999876655555556677777766532 222 345567777777652111 001
Q ss_pred hHhH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh-HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 603 MQYA-DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM-PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 603 ~~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
.... ..+++.++.++.+++..++..++.+|+.++..........+ ..++|.|...+.+..+..++..|+++++.++..
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 1111 24678889999999889999999999999875544333333 357888988888653669999999999999863
Q ss_pred HhccccccH-HHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhH--HHHHHHHHHHHhhccCCCCCCccHH
Q 002876 681 LEDKILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL--MYAMPMLQSAAELSVHTSGVDDDMT 757 (872)
Q Consensus 681 ~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l--~~il~~l~~~l~~~~~~~~~d~~~~ 757 (872)
.+......+ ..+++.|+.++.+. +..++..++++++.++....+....++ ..+++.|...+... +
T Consensus 360 ~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~------d---- 427 (528)
T 4b8j_A 360 NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP------D---- 427 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS------C----
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC------C----
Confidence 322222222 25678888888877 678999999999999987545555555 35788888888654 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC--cccccccchHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 002876 758 EYTNSLRNGILEAFSGIFQGFKGSP--KTQLLMPYAPHI-----LQFLDSLYMEKDMDDVVTKTAIGVLGDLADT 825 (872)
Q Consensus 758 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~i-----~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~ 825 (872)
..++..++.++..++..-.... ......+|...+ ++.+..+... .+.+++..|..++..+...
T Consensus 428 ---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~--~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 428 ---IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH--DNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC--CCHHHHHHHHHHHHHHCCC
Confidence 2567778888888876421100 000122333332 4556666553 6889999999998877654
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.68 E-value=2.8e-12 Score=149.82 Aligned_cols=674 Identities=11% Similarity=0.064 Sum_probs=387.1
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHhc----ChhHHHHHHHHHhhcCCCChhHHHHHHHHHh---c-ccccchh-
Q 002876 4 EVTQILLNAQ--SVDGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILK---N-ALDAKEQ- 72 (872)
Q Consensus 4 ~l~~~l~~~~--s~~~~~r~~a~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~---~-~i~~~~~- 72 (872)
.+..++.... +...-+|++....+..+..+ +.|+|+..+.+.+.+++ ....-.....+|. . .......
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~~~LriL~~i~EEv~~~~~~~ 167 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASS-QSEFSNFYLKVLLSIGDEIADSLVLK 167 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCCCCSCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCC-hhHHHHHHHHHHHHhHHHHHhccccc
Confidence 3455555532 23456999999998876554 55778888888886532 1111111222222 1 1110000
Q ss_pred hhHHHhh--hhccCCChHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHhhcCCC--CchhHHHHHHHhhcCCC
Q 002876 73 HRKFELV--QRWLSLDSSVKAQIKSFILKTLS----SPAHDARSTASQVVAKVAGIELPHK--QWPELIGALLSNIHQLP 144 (872)
Q Consensus 73 ~~~~~~~--~~~~~l~~~~~~~i~~~ll~~l~----~~~~~vr~~~a~~l~~i~~~~~~~~--~~~~l~~~l~~~l~~~~ 144 (872)
......+ .....+..+....+.+..+..|. +.++.++..+-.+++....-. |-. .=+.+++.+.+.+.+
T Consensus 168 ~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~-- 244 (980)
T 3ibv_A 168 TDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI-- 244 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS--
T ss_pred CHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC--
Confidence 0000000 00000111101112222333332 356777777777776665411 100 005788888888875
Q ss_pred hhHHHHHHHHHHHhhhhccccccchhhHHHHHH-----HHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccCh-----
Q 002876 145 PHTKQATLETLGYICEEVSSDAVEQDHVNKILT-----AVVQGMNASESNNDVRLAATRALYNALGFAQANFSND----- 214 (872)
Q Consensus 145 ~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~-----~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~----- 214 (872)
+..|..|+.||..++... .+ ......++. .++..+..++.+.++.....+.+..+.......-...
T Consensus 245 ~~~r~~A~ecL~ei~~k~-~~---~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~ 320 (980)
T 3ibv_A 245 EELRCAACETMTEIVNKK-MK---PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSP 320 (980)
T ss_dssp HHHHHHHHHHHHHHHHSC-CC---HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CH
T ss_pred hHHHHHHHHHHHHHHHcC-CC---hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccch
Confidence 789999999999998764 11 111111221 1122222114577776666666554432211110000
Q ss_pred -------hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh---------HHhhHhhHHHHHHHHHHHHhcCC-----
Q 002876 215 -------MERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY---------YEKLAPYIQDIFNITAKAVREDE----- 273 (872)
Q Consensus 215 -------~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---------~~~~~~~~~~l~~~~~~~~~~~~----- 273 (872)
.....+++.+...+.+++.++-..++..|..++... ...+.+++..+++.++..+.-++
T Consensus 321 ~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~ 400 (980)
T 3ibv_A 321 ELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWD 400 (980)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCC
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccc
Confidence 112357788888888889999999999998887642 23345777888888888775211
Q ss_pred -----h------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCcc
Q 002876 274 -----E------PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (872)
Q Consensus 274 -----~------~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~ 342 (872)
+ ++|...-.+...++-..++ .+....+..+.+.+.+.+... ....
T Consensus 401 ~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~------------------~~l~~~~~~i~~~l~~~l~~~------~~~~ 456 (980)
T 3ibv_A 401 DDPDSEEEAEFQEMRKKLKIFQDTINSIDSS------------------LFSSYMYSAITSSLSTAATLS------PENS 456 (980)
T ss_dssp CCSSSSTHHHHHHHHHHHHHHHHHHHHHCHH------------------HHHHHHHHHHHHHHHHHTTSC------HHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhcChH------------------HHHHHHHHHHHHHHHHHhccc------CCCC
Confidence 1 1222211111111110000 011111112333333333210 0234
Q ss_pred chHhHHHHHHHHHHHHHcCC---------cchhchHHHHHhhhc-----CcchhhhHHHHHHHHHhhCCCCCCcchHHHH
Q 002876 343 WNIAMAGGTCLGLVARTVGD---------DIVPLVMPFVEENIT-----KQEWRQREAATYAFGSILEGPSPEKLVPLVN 408 (872)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~~~---------~~~~~l~~~l~~~~~-----~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~ 408 (872)
|..+.++.-++..+++.... ...|.+++++...+. ++++.+|.+++.+++..++... .-.++++
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~--~~~~~l~ 534 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD--YESAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG--TCCTTHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh--cCchhHH
Confidence 99999999999999886532 346778887776654 5678999999999999887763 2236788
Q ss_pred HHHHHHHH--HhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--Ch-------------
Q 002876 409 IALNFMLT--ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VP------------- 471 (872)
Q Consensus 409 ~i~~~l~~--~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~------------- 471 (872)
.+++.++. ++ .+++++||.+|+.++.++++.++. ....|++.++..+-..+.- .+
T Consensus 535 ~~L~~ll~~~gl-~~~~~~V~~~a~~af~~f~~~~~~-------~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 535 ALIEYFVGPRGI-HNTNERVRPRAWYLFYRFVKSIKK-------QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp HHHHHHTSTTTT-TCCCTTTHHHHHHHHHHHHHHTTT-------TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred HHHHHHhccccc-cCCChhHHHHHHHHHHHHHHHhhH-------HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 99999999 99 899999999999999999998863 2346888888877666551 00
Q ss_pred -------hHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHH----hhccCCch-hhh-hHHHHHHHHHHHHHcc
Q 002876 472 -------NVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLT----VTHREDAG-ESR-LRTAAYETLNEVVRCS 538 (872)
Q Consensus 472 -------~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~----~l~~~~~~-~~~-v~~~~~~~l~~l~~~~ 538 (872)
.-+.....+++.++...+. +.+....|+..+++.++. .+...... +.. .....+.+++.+.+..
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~---~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf 683 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNL---TPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 683 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTS
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccC
Confidence 1345577788888765421 012233455555555443 34332211 111 1125677788888877
Q ss_pred ccC------cHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHH
Q 002876 539 TDE------TAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGL 612 (872)
Q Consensus 539 ~~~------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~ 612 (872)
+.. ....+.+.++.++..+.... .+ ..++..++.++..++..+|.. +.|++++++..
T Consensus 684 ~~~~~~~~p~~~~f~~~~~~il~~l~~~~-------~~----~~irea~~~~~~r~i~~lg~~------~~p~lp~~i~~ 746 (980)
T 3ibv_A 684 PARGSEEVAWLASFNKASDEIFLILDRMG-------FN----EDIRGAVRFTSGRIINVVGPD------MLPKVPQLISI 746 (980)
T ss_dssp CSCC-CCCSHHHHHHHHHHHHHHHHHHSC-------CS----HHHHHHHHHHHHHHTTTTHHH------HTTTHHHHHHH
T ss_pred CcccCCCCcHHHHHHHHHHHHHHHHHhcC-------Cc----HHHHHHHHHHHHHHHHHccHh------HHHHHHHHHHH
Confidence 532 33344555555555554321 11 146677889999999888876 88999999888
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHh----hhcCCC--------hhhHHHHHHHHHHHHHHH
Q 002876 613 FLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEM----GLQNFE--------DYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 613 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~----~l~~~~--------~~~v~~~a~~~l~~l~~~ 680 (872)
++. +-+..-....+..++.++..+|.++.+.+..+++.+.. .++... ...+++..+.++..+..+
T Consensus 747 ll~---~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~ 823 (980)
T 3ibv_A 747 LLN---SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNK 823 (980)
T ss_dssp HHH---HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 873 22334456788899999999998888888776665443 444321 123666777777777763
Q ss_pred H-hccc-----cccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc-----cchHHhHHHHHHHHHHHH
Q 002876 681 L-EDKI-----LPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG-----ENFEKYLMYAMPMLQSAA 743 (872)
Q Consensus 681 ~-~~~~-----~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~-----~~~~~~l~~il~~l~~~l 743 (872)
- +.-+ .++++.++..++..-.+-. +....+.++..+.+++...| +.|..|+-++.|......
T Consensus 824 ~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~-d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p 896 (980)
T 3ibv_A 824 GFGSILFTEENQVYFDPLINSILHFANLVG-EPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMP 896 (980)
T ss_dssp TCTGGGGSHHHHTTHHHHHHHHHHHC------CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGG
T ss_pred CchhhhcCCcchHHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhh
Confidence 2 3222 3567788888887644422 56678889999999998864 247777555777666654
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.67 E-value=8e-16 Score=170.81 Aligned_cols=405 Identities=13% Similarity=0.131 Sum_probs=271.8
Q ss_pred hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCC-cHHHHHHHHHHHHHhhhhccC
Q 002876 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDP-NNHVKDTTAWTLGRMFEFLHG 443 (872)
Q Consensus 366 ~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~-~~~vr~~a~~~l~~l~~~~~~ 443 (872)
...++.+.+.+.++++..|..|+.++..++...........+ ..++|.++..+ .++ ++.+|..|+++++.++...+.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L-~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT-STTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 344666677778888999999999999987653222222222 45788999999 887 899999999999999885321
Q ss_pred CCCCCcccCccc-hHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchh--HHHHHHHHHHhhccCCch
Q 002876 444 STLETPIINQGN-CQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPF--FQEIVQALLTVTHREDAG 519 (872)
Q Consensus 444 ~~~~~~~~~~~~-~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~--l~~i~~~l~~~l~~~~~~ 519 (872)
..... -..+++.++..+.+ ++.++..|+++|.+++..... .... -..+++.++..+.+.
T Consensus 165 -------~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~-------~~~~~~~~~~l~~L~~ll~~~--- 227 (530)
T 1wa5_B 165 -------QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD-------YRDYVLQCNAMEPILGLFNSN--- 227 (530)
T ss_dssp -------HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH-------HHHHHHHTTCHHHHHHGGGSC---
T ss_pred -------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc-------chHHHHHcCcHHHHHHHhccC---
Confidence 01111 12456777777775 789999999999999864210 0111 123577777877763
Q ss_pred hhhhHHHHHHHHHHHHHcc-ccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Q 002876 520 ESRLRTAAYETLNEVVRCS-TDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQT 598 (872)
Q Consensus 520 ~~~v~~~~~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 598 (872)
++.++..++++|..++... +.........++|.++..+.. .+. .++..++.+|..+....+.
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~---------~d~----~v~~~a~~~L~~L~~~~~~---- 290 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS---------MDT----ETLVDACWAISYLSDGPQE---- 290 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC---------CCH----HHHHHHHHHHHHHHSSCHH----
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC---------CCH----HHHHHHHHHHHHHhCCCHH----
Confidence 5778999999999999876 333344455677777766532 222 3555678888877532111
Q ss_pred hhHhhHhH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh-HHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002876 599 KYVFMQYA-DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM-PEFYKYVEMGLQNFEDYQVCAITVGVVGD 676 (872)
Q Consensus 599 ~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 676 (872)
...... ..+++.++.++.++++.++..++.+++.++...+......+ ..++|.+...+.+. ++.++..|+++++.
T Consensus 291 --~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 291 --AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISN 367 (530)
T ss_dssp --HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred --HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 122222 25778888999988889999999999999865444333333 35889999999865 57999999999999
Q ss_pred HHHHHhccccccH-HHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhcc--chHHhHHH--HHHHHHHHHhhccCCCC
Q 002876 677 LCRALEDKILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE--NFEKYLMY--AMPMLQSAAELSVHTSG 751 (872)
Q Consensus 677 l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~--~~~~~l~~--il~~l~~~l~~~~~~~~ 751 (872)
++...+.....++ ..+++.|+.++.++ +..++..++++++.++...+. ....++-. ++|.|...+...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~----- 440 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVA--EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA----- 440 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-----
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-----
Confidence 8864333222222 24678888888776 678999999999999987544 34444433 788888887543
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHhhcccCCCc--ccccccchHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 002876 752 VDDDMTEYTNSLRNGILEAFSGIFQGFKGSPK--TQLLMPYAPHI-----LQFLDSLYMEKDMDDVVTKTAIGVLGDLAD 824 (872)
Q Consensus 752 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i-----~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~ 824 (872)
+ ..++..++.++..++..-..... .....+|...+ ++.+..++.+ .+.+++..|..++..+..
T Consensus 441 -~-------~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~--~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 441 -D-------NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN--ENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp -C-------HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC--SCHHHHHHHHHHHHHHSS
T ss_pred -C-------HHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHCC
Confidence 2 35777888888888764211000 00123444433 5566666654 688999999988877665
Q ss_pred H
Q 002876 825 T 825 (872)
Q Consensus 825 ~ 825 (872)
.
T Consensus 511 ~ 511 (530)
T 1wa5_B 511 E 511 (530)
T ss_dssp S
T ss_pred c
Confidence 4
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.66 E-value=6e-15 Score=163.73 Aligned_cols=401 Identities=13% Similarity=0.066 Sum_probs=270.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCc-----hhHHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhcccccc
Q 002876 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQW-----PELIGALLSNIHQL-PPHTKQATLETLGYICEEVSSDAV 167 (872)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~-----~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~l 167 (872)
.+.+++.|.++++.+|..++.++..++..... ..+ ..+++.|++.+.++ ++.+|..|+.+|+.++... ++.-
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQT 166 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHH
Confidence 45678888999999999999999999765311 222 35789999999987 7899999999999998743 2111
Q ss_pred chhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 002876 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (872)
Q Consensus 168 ~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~ 247 (872)
..-.-...++.++..+. ++++.+|..|+.+|.++....+..-. ......+++.+..++.++++.++..++.+|..++
T Consensus 167 ~~~~~~g~i~~Lv~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDYRD-YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCccchH-HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 00111355777888887 67999999999999998743211100 0001235777888888889999999999999998
Q ss_pred HHh-HHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhh-hhHHHHH
Q 002876 248 STY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPLL 325 (872)
Q Consensus 248 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l 325 (872)
... +..-......+++.+...+.+.+++++..++.++..++.... ......+ ..++|.+
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-------------------~~~~~~~~~~~v~~L 304 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-------------------EAIQAVIDVRIPKRL 304 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-------------------HHHHHHHHTTCHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-------------------HHHHHHHhcCcHHHH
Confidence 754 222222344677778888888889999999999988875211 1111112 2456777
Q ss_pred HHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC---cc-hhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCC
Q 002876 326 LETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DI-VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPE 401 (872)
Q Consensus 326 ~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~ 401 (872)
+..+.. ..+.++..|..+|..++...+. .+ -..+++.+...+.+++|.+|..|+.+++.++.+. ..
T Consensus 305 v~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~ 374 (530)
T 1wa5_B 305 VELLSH---------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TE 374 (530)
T ss_dssp HHGGGC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred HHHHCC---------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 776642 1257888888888877642211 11 1246677778888889999999999999998764 23
Q ss_pred cchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccch--HHHHHHHHHhccC-ChhHHHHH
Q 002876 402 KLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC--QQIISVLLQSMKD-VPNVAEKA 477 (872)
Q Consensus 402 ~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a 477 (872)
.....+ ..+++.+...+ .++++.+|..|++++++++...... +.. ..++ ..+++.++..+.+ ++.++..+
T Consensus 375 ~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~----~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 375 QIQAVIDANLIPPLVKLL-EVAEYKTKKEACWAISNASSGGLQR----PDI-IRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp HHHHHHHTTCHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTTC----THH-HHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCc----HHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 233323 35788899999 8899999999999999998864210 000 1111 2367888888875 78999999
Q ss_pred HHHHHHHHHhcccCCC-CCCCCchhHHHH-----HHHHHHhhccCCchhhhhHHHHHHHHHHHHHc
Q 002876 478 CGALYFLAQGFEDAIS-PSSPLTPFFQEI-----VQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~-~~~~l~~~l~~i-----~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~ 537 (872)
+++|.+++...+.... ......+|...+ ++.+.....++ ++.++..+..++..+...
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~---~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE---NDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS---CHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHCCc
Confidence 9999999886432000 001234555443 55555555443 466777777777665543
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.65 E-value=3.2e-13 Score=151.25 Aligned_cols=446 Identities=14% Similarity=0.104 Sum_probs=268.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHH----HHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhh
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLS----LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQ 80 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~----L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
+.+++....++|-..|+-+.-++..+...++ +.... +..-+. +.++.+|.+|+..|.+...
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~-e~~~l~in~l~kDL~--~~n~~vr~lAL~~L~~i~~------------ 136 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQ-DVHLLMTNCIKNDLN--HSTQFVQGLALCTLGCMGS------------ 136 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHS--CSSSHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCC------------
Confidence 4455666667888888888888888766543 33222 333333 3477888888888877542
Q ss_pred hccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002876 81 RWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICE 160 (872)
Q Consensus 81 ~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~ 160 (872)
++....+.+.+.++|.++++.||+.|+.++..++... | ..-+.+++.+...+.++++.++.+|+.++..++.
T Consensus 137 ------~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 137 ------SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-P-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp ------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-G-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-h-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 3455677888889999999999999999999999865 5 3445677778888888899999999999998876
Q ss_pred hccccc---cchhhHHHHHHHHHhcccC---------CCCCHHHHHHHHHHHHHhHhhchhh-----------c------
Q 002876 161 EVSSDA---VEQDHVNKILTAVVQGMNA---------SESNNDVRLAATRALYNALGFAQAN-----------F------ 211 (872)
Q Consensus 161 ~~~~~~---l~~~~~~~i~~~l~~~l~~---------~~~~~~vr~~al~~l~~~~~~~~~~-----------~------ 211 (872)
.. ++. + ....+.++..+.+...+ ...++-.+...+++++.+...-+.. .
T Consensus 209 ~~-~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 209 RS-PDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS 286 (618)
T ss_dssp SH-HHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCS
T ss_pred hC-hHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 53 321 1 11222333322221110 0135556666666666544321100 0
Q ss_pred cC-------------------hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcC
Q 002876 212 SN-------------------DMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVRED 272 (872)
Q Consensus 212 ~~-------------------~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (872)
.+ ........+.+..++.++++.+|..++.+|..++...|..+.++...++ ..+.++
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~----~~l~d~ 362 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIV----DCLKDL 362 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHH----HGGGSS
T ss_pred cchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHH----HHccCC
Confidence 00 0001123455566677888999999999999999998888777766544 445788
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHH
Q 002876 273 EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTC 352 (872)
Q Consensus 273 ~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~ 352 (872)
+.++|..|++++..++.. ..+..+++.+...+.. .| ..+|..+..+
T Consensus 363 d~~Ir~~alelL~~l~~~-------------------------~nv~~iv~eL~~~l~~--~d-------~e~r~~~v~~ 408 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNG-------------------------NNIRGMMKELLYFLDS--CE-------PEFKADCASG 408 (618)
T ss_dssp CHHHHHHHHHHHHHHCCS-------------------------SSTHHHHHHHHHHHHH--CC-------HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHccc-------------------------ccHHHHHHHHHHHHHh--CC-------HHHHHHHHHH
Confidence 899999999998888741 1123345555555542 11 2678888899
Q ss_pred HHHHHHHcCCc---chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccC--CcHHHH
Q 002876 353 LGLVARTVGDD---IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQD--PNNHVK 427 (872)
Q Consensus 353 l~~l~~~~~~~---~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d--~~~~vr 427 (872)
++.++..++.. .++.++.++. +..-.++..+...+..+.... ++ .. ..+++.+...+ .+ .+..+.
T Consensus 409 I~~la~k~~~~~~~~v~~ll~lL~----~~~~~v~~~~~~~l~~ii~~~-p~-l~---~~~v~~L~~~l-~~~~~~~~~~ 478 (618)
T 1w63_A 409 IFLAAEKYAPSKRWHIDTIMRVLT----TAGSYVRDDAVPNLIQLITNS-VE-MH---AYTVQRLYKAI-LGDYSQQPLV 478 (618)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHH----HTGGGSCSSHHHHHHHHHHHS-CS-TH---HHHHHHHHHHH-HHCCSCSHHH
T ss_pred HHHHHHHhCccHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHhcC-hh-HH---HHHHHHHHHHH-hcccccHHHH
Confidence 99999887543 3344444333 322234444455555555433 22 22 22333444444 32 233444
Q ss_pred HHHHHHHHHhhhhccCCCCCC--c-ccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHH
Q 002876 428 DTTAWTLGRMFEFLHGSTLET--P-IINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQE 504 (872)
Q Consensus 428 ~~a~~~l~~l~~~~~~~~~~~--~-~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~ 504 (872)
..++|++|.++..+..+.... | ...+..+..++..+++....++.+|..+.+++.++.... + ...+.
T Consensus 479 ~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~------~-~~~~~--- 548 (618)
T 1w63_A 479 QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRF------T-CTVNR--- 548 (618)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTC------S-SCHHH---
T ss_pred HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhC------c-chHHH---
Confidence 578999999998764210000 0 011122233333344333357899999999999997653 2 12223
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHHHHHHHHH
Q 002876 505 IVQALLTVTHREDAGESRLRTAAYETLNEVVR 536 (872)
Q Consensus 505 i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~ 536 (872)
+..++....... +..+|..+...+..+..
T Consensus 549 -l~~~L~~~~~~~--d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 549 -IKKVVSIYGSSI--DVELQQRAVEYNALFKK 577 (618)
T ss_dssp -HHHHHHHHTTCS--CHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhcCCC--CHHHHHHHHHHHHHHcC
Confidence 333333333322 67899999888776654
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.64 E-value=1e-13 Score=159.60 Aligned_cols=511 Identities=11% Similarity=0.085 Sum_probs=307.0
Q ss_pred chhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
+..-++.+++.+.+++...|..++..+...-. ..+ ....++.+...+. +.++.+|..|+.++..+.....
T Consensus 113 ~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i----~~g~ip~Lv~lL~--~~d~~vr~~A~~~L~~L~~~~~ 182 (780)
T 2z6g_A 113 FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDD----AEL----ATRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEA 182 (780)
T ss_dssp -------------CCSCHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTSHH
T ss_pred ccccHHHHHHHhcCccHHHHHHHHHHHHhhhH----HHH----HhCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhCCCh
Confidence 34447788888898888888888888875422 112 2556677777777 6789999999999999765321
Q ss_pred hhccChhhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhHHhhHhhH-HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002876 209 ANFSNDMERDYIMRVVCEATL-SPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (872)
.... ....+.+++.+...+. +.++++|..++.+|..+.... +...... ...++.++..+.+.++.++..|+.++..
T Consensus 183 ~~~~-i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 183 SRHA-IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHH-HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1000 0001346666666665 458999999999999976542 2211111 2578888888888889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCchHhHHHhhh-hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHH------
Q 002876 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVART------ 359 (872)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~------ 359 (872)
++.... ....... ...++.++..+.. ..+.++..+..+|..++..
T Consensus 261 La~~~~-------------------~~~~~v~~~g~v~~Lv~lL~~---------~~~~v~~~a~~aL~~La~~~~e~~~ 312 (780)
T 2z6g_A 261 LLLHQE-------------------GAKMAVRLAGGLQKMVALLNK---------TNVKFLAITTDCLQILAYGNQESKL 312 (780)
T ss_dssp HHHHST-------------------THHHHHHHTTHHHHHHHGGGC---------CCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCCh-------------------hhHHHHHHcCCHHHHHHHHhc---------CCHHHHHHHHHHHHHHhcCChHHHH
Confidence 886421 0111111 2467777777653 1246677777788766631
Q ss_pred --cCCcchhchHHHHHhhhcCcc-hhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 002876 360 --VGDDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLG 435 (872)
Q Consensus 360 --~~~~~~~~l~~~l~~~~~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (872)
.....++.++ +.+.+.+ ...++.+..++..++... ......+ ..+++.+...+ .+.++.++..+++++.
T Consensus 313 ~i~~~~~i~~Lv----~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 313 IILASGGPQALV----NIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLR 385 (780)
T ss_dssp HHHTTTHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHH----HHHhcCCHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHH
Confidence 1122333333 3444433 345667777888877532 2222222 34678888999 8899999999999999
Q ss_pred HhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHHHh
Q 002876 436 RMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTV 512 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~~~ 512 (872)
+++..... ......+++.+++.+.+ ++.++..|+++|.+++..-.. ....+ ...++.|+..
T Consensus 386 ~L~~~~~~---------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~-------~~~~i~~~g~i~~Lv~l 449 (780)
T 2z6g_A 386 NLSDAATK---------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-------NKMMVCQVGGIEALVRT 449 (780)
T ss_dssp HHHTTCTT---------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-------HHHHHHTTTHHHHHHHH
T ss_pred HHhccchh---------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-------HHHHHHHCCCHHHHHHH
Confidence 99986531 22346889999999986 789999999999999653110 00000 1245666666
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHccccCc--H-HH-HHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 002876 513 THREDAGESRLRTAAYETLNEVVRCSTDET--A-PM-VMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVI 588 (872)
Q Consensus 513 l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~--~-~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 588 (872)
+.+... ...++..++.+|+.+....+... . .. -...++.+++.+.. .+.. .++..++.+|..+
T Consensus 450 L~~~~~-~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~--------~~~~----~v~~~A~~aL~nL 516 (780)
T 2z6g_A 450 VLRAGD-REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP--------PSHW----PLIKATVGLIRNL 516 (780)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST--------TCCH----HHHHHHHHHHHHH
T ss_pred HHccCC-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC--------CChH----HHHHHHHHHHHHH
Confidence 654221 23688899999998865433210 0 11 12234555544422 1111 3555678888877
Q ss_pred HHHhCCCcchhhHhhHhH-HHHHHHHHHHHhcccc----------------------chhhHHHHHHHHHHHHhhhhhHh
Q 002876 589 IQKLGSSEQTKYVFMQYA-DQMMGLFLRVFAIRSA----------------------TAHEEAMLAIGALAYATGQDFLK 645 (872)
Q Consensus 589 ~~~l~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~----------------------~~~~~a~~~l~~l~~~~~~~~~~ 645 (872)
.. +.. . ..... ..+++.+.+++.+.+. .+++.+..+|+.++.. .....
T Consensus 517 a~--~~~--~---~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~ 587 (780)
T 2z6g_A 517 AL--CPA--N---HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--IHNRI 587 (780)
T ss_dssp HS--SHH--H---HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--HHHHH
T ss_pred hc--CHH--H---HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--hhhHH
Confidence 53 111 0 11111 1355666666655332 2455666677766532 11112
Q ss_pred hh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHH--HHHHHHHHccCCCCCCCCchhHHHHHHHHH
Q 002876 646 YM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDG--IMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 721 (872)
Q Consensus 646 ~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 721 (872)
.+ ...+|.|...+.+. +..++..+..+++.++.. ......+.+ .++.|..++.++ +..+|..+.+++..++
T Consensus 588 ~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~--~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 588 VIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSR--NEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHHHTCCHHHHHHGGGCS-CHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 22 34788899999865 558999999999887632 112222222 567788888877 7889999999999998
Q ss_pred HHhccchH
Q 002876 722 LAIGENFE 729 (872)
Q Consensus 722 ~~~~~~~~ 729 (872)
..-+..+.
T Consensus 663 ~~~~~~~~ 670 (780)
T 2z6g_A 663 EDKPQDYK 670 (780)
T ss_dssp TTSCTTHH
T ss_pred cCChHhhh
Confidence 76654443
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.63 E-value=1.6e-12 Score=145.56 Aligned_cols=468 Identities=12% Similarity=0.063 Sum_probs=284.0
Q ss_pred CChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCch
Q 002876 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWP 130 (872)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~ 130 (872)
.+...|+++-..+.++.+. .++..-.+.+.+.+-|.++|+.+|..|..+++.+...+ ..+
T Consensus 82 ~~~~~Krl~Yl~~~~~~~~----------------~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~----~~~ 141 (618)
T 1w63_A 82 QKFTDKRIGYLGAMLLLDE----------------RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSE----MCR 141 (618)
T ss_dssp SSHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH----HHH
T ss_pred CchHHHHHHHHHHHHHhCC----------------CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH----HHH
Confidence 3677788777777766652 35555667888999999999999999999999987432 346
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhh
Q 002876 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (872)
Q Consensus 131 ~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (872)
.+++.+...+.++++.+|..|+.++..++... |+.+ +.+++.+...+. |.++.|+..|+.++..+....++.
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChHH
Confidence 77899999999999999999999999999876 6654 345666667777 899999999999999976533221
Q ss_pred ---ccChhhHHHHHHHHHHhhc-----------CCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHH---hcCC
Q 002876 211 ---FSNDMERDYIMRVVCEATL-----------SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAV---REDE 273 (872)
Q Consensus 211 ---~~~~~~~~~il~~l~~~~~-----------~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~ 273 (872)
+. ...+.+++.+..... .+++..+..++++|..+....+.. ...+..++..+.... ++.+
T Consensus 214 ~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 214 LAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-SEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-HHTTHHHHHHHHHTSCCSSTHH
T ss_pred HHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHhccccccchH
Confidence 10 001334444443321 247778888888888877655432 111222222222211 1123
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHH
Q 002876 274 EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCL 353 (872)
Q Consensus 274 ~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l 353 (872)
..+...|..++..+... .......++.+...+.. .| -++|..|..++
T Consensus 291 ~aV~~ea~~~i~~l~~~------------------------~~l~~~a~~~L~~~L~~--~d-------~~vr~~aL~~L 337 (618)
T 1w63_A 291 NAILYETVLTIMDIKSE------------------------SGLRVLAINILGRFLLN--ND-------KNIRYVALTSL 337 (618)
T ss_dssp HHHHHHHHHHHHHSCCC------------------------HHHHHHHHHHHHHHHTC--SS-------TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC------------------------HHHHHHHHHHHHHHHhC--CC-------CchHHHHHHHH
Confidence 34566666555443210 01111223444444432 11 27788889999
Q ss_pred HHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 002876 354 GLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWT 433 (872)
Q Consensus 354 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~ 433 (872)
..++...+..+. ...+.+...+.+++..+|..++.++..++...+ . ..+++.+...+ .+.+..+|..+..+
T Consensus 338 ~~i~~~~p~~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n---v----~~iv~eL~~~l-~~~d~e~r~~~v~~ 408 (618)
T 1w63_A 338 LKTVQTDHNAVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN---I----RGMMKELLYFL-DSCEPEFKADCASG 408 (618)
T ss_dssp HHHHHHHHHHHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS---T----HHHHHHHHHHH-HHCCHHHHHHHHHH
T ss_pred HHHHhhCHHHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc---H----HHHHHHHHHHH-HhCCHHHHHHHHHH
Confidence 988876554332 234456667788889999999999999887532 2 44566677777 77889999999999
Q ss_pred HHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHh
Q 002876 434 LGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTV 512 (872)
Q Consensus 434 l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~ 512 (872)
++.++..++. .....++.+++.+.+ ...++..+...+..++... + .+. ..++..+...
T Consensus 409 I~~la~k~~~-----------~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~------p-~l~---~~~v~~L~~~ 467 (618)
T 1w63_A 409 IFLAAEKYAP-----------SKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS------V-EMH---AYTVQRLYKA 467 (618)
T ss_dssp HHHHHHSSCC-----------CHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS------C-STH---HHHHHHHHHH
T ss_pred HHHHHHHhCc-----------cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC------h-hHH---HHHHHHHHHH
Confidence 9999997641 233455666666654 2345555566677776653 2 222 3345555555
Q ss_pred hccCCchhhhhHHHHHHHHHHHHHcccc---------CcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 002876 513 THREDAGESRLRTAAYETLNEVVRCSTD---------ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCG 583 (872)
Q Consensus 513 l~~~~~~~~~v~~~~~~~l~~l~~~~~~---------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (872)
+.+... ...+...++|++|........ ...+ ..+.+.+...+... .++. .++..++.
T Consensus 468 l~~~~~-~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~-------~~~~----~vr~~~lt 533 (618)
T 1w63_A 468 ILGDYS-QQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTE--DEVLDILESVLISN-------MSTS----VTRGYALT 533 (618)
T ss_dssp HHHCCS-CSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCH--HHHHHHHHHHHHST-------TCCH----HHHHHHHH
T ss_pred Hhcccc-cHHHHHHHHHHHhhhHHHhcccccccccccCCCH--HHHHHHHHHHHhcc-------CCCH----HHHHHHHH
Confidence 543211 123344689999988765432 1111 11222222211110 0111 34555666
Q ss_pred HHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 002876 584 CLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALA 636 (872)
Q Consensus 584 ~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~ 636 (872)
++..+....+. ..+. +...+-.+..+.+.++|+.|...+.-+.
T Consensus 534 a~~Kl~~~~~~-------~~~~---l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 534 AIMKLSTRFTC-------TVNR---IKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHTTCSS-------CHHH---HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-------hHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 66666554331 2222 3333333455667789998887666554
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.63 E-value=1.7e-13 Score=155.51 Aligned_cols=504 Identities=11% Similarity=0.033 Sum_probs=306.8
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh
Q 002876 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (872)
...++.|...++++++.+|..|+.+|..++... +..........+++.++..+.+ +.++++|..|+.+|..+.... .
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~-~ 89 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHR-E 89 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSH-H
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCh-h
Confidence 346788888888888999999999999998754 2110001123567777777773 458999999999999755321 1
Q ss_pred hccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 002876 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (872)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (872)
... .......++.+..+++++++.++..++.+|..++........... ...++.++..+.+.+.+++..++.++..++
T Consensus 90 ~~~-~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 90 GLL-AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHH-HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 100 000124678888889999999999999999999986543322222 367888888888888778877777777766
Q ss_pred HHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcC--Ccch-
Q 002876 289 DEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG--DDIV- 365 (872)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~- 365 (872)
....+. ...+.. ...++.++..+...+. ...+..+..+|..++..-. ..++
T Consensus 169 ~~~~~~---------------~~~i~~---~g~v~~Lv~lL~~~~~--------~~~~~~a~~~L~nLs~~~~~~~~l~~ 222 (644)
T 2z6h_A 169 YGNQES---------------KLIILA---SGGPQALVNIMRTYTY--------EKLLWTTSRVLKVLSVCSSNKPAIVE 222 (644)
T ss_dssp TTCHHH---------------HHHHHH---TTHHHHHHHHHTTCCC--------HHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred hcCcHH---------------HHHHHH---cCChHHHHHHHHcCCh--------HHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 311000 001111 1346666666653210 1344555666666653211 0111
Q ss_pred hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCC
Q 002876 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (872)
Q Consensus 366 ~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
...++.+.+.+.+.+...++.++.++..++...... .....+++.+...+ .++++.+|..+++++++++...+.
T Consensus 223 ~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~v~~~a~~aL~~L~~~~~~-- 296 (644)
T 2z6h_A 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYK-- 296 (644)
T ss_dssp TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHH--
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHH--
Confidence 124566667777777889999999999998764321 12357889999999 999999999999999999874310
Q ss_pred CCCcccCcc-chHHHHHHHHHhccC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCch--hHHHHHHHHHHhhccCCch
Q 002876 446 LETPIINQG-NCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTP--FFQEIVQALLTVTHREDAG 519 (872)
Q Consensus 446 ~~~~~~~~~-~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~--~l~~i~~~l~~~l~~~~~~ 519 (872)
.... .-...++.++..+.+ .+.++..|+++|.+++...+. ...... .-...++.+.+.+.+.+
T Consensus 297 -----~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~----~~~~q~~v~~~~~l~~L~~lL~~~~-- 365 (644)
T 2z6h_A 297 -----NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE----AEMAQNAVRLHYGLPVVVKLLHPPS-- 365 (644)
T ss_dssp -----HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT----HHHHHHHHHHTTHHHHHHHTTSTTC--
T ss_pred -----HHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch----HHHHHHHHHHccChHHHHHHhCccC--
Confidence 0111 112356777777763 268999999999999642110 000000 01235778888887654
Q ss_pred hhhhHHHHHHHHHHHHHccccCcHHHH-HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Q 002876 520 ESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQT 598 (872)
Q Consensus 520 ~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 598 (872)
++.++..++++++.+....... .... ...+|.+++.+... +. .++..+..+++.- .+...
T Consensus 366 ~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~---------~~----~vr~~a~~al~n~--~~~~~--- 426 (644)
T 2z6h_A 366 HWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA---------HQ----DTQRRTSMGGTQQ--QFVEG--- 426 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH---------HH----HHTTC------------CCS---
T ss_pred chHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhcc---------ch----hhhhHhhhccccc--hhccc---
Confidence 4578889999999887643322 2221 24556666555431 11 1222222222210 00000
Q ss_pred hhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002876 599 KYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGD 676 (872)
Q Consensus 599 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 676 (872)
..+..+++.+..+|..++.... ....+ ...+|.+...+.+. +.+++..+..+++.
T Consensus 427 --------------------~~~~~v~~~a~~aL~~La~~~~--~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~ 483 (644)
T 2z6h_A 427 --------------------VRMEEIVEGCTGALHILARDVH--NRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCE 483 (644)
T ss_dssp --------------------SCHHHHHHHHHHHHHHHTTSHH--HHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred --------------------ccHHHHHHHHHHHHHHHhcCHH--HHHHHHhCCcHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 0123355667777777664321 22222 34788888888765 45899999999888
Q ss_pred HHHHHhccccccHH--HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhcc
Q 002876 677 LCRALEDKILPYCD--GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE 726 (872)
Q Consensus 677 l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 726 (872)
++.. ......+. ..++.|..++.++ +.++|..+..+++.++..-+.
T Consensus 484 l~~~--~~~~~~i~~~g~l~~L~~ll~~~--~~~vr~~A~~aL~~l~~~~~~ 531 (644)
T 2z6h_A 484 LAQD--KEAAEAIEAEGATAPLTELLHSR--NEGVATYAAAVLFRMSEDKPQ 531 (644)
T ss_dssp HHTS--HHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTTSCH
T ss_pred HHcC--HHHHHHHHHcCChhHHHHHHcCC--CHHHHHHHHHHHHHHhccCcH
Confidence 7642 11111111 2467788888877 788999999999998765543
No 41
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.60 E-value=3.2e-13 Score=149.93 Aligned_cols=401 Identities=12% Similarity=0.140 Sum_probs=260.5
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHhHHhh
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE-VKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
++.+++.+. ++++.+|..|+.++..++...............+++.+..++.+++ +.+|..++.+|..++...++..
T Consensus 76 l~~lv~~L~--s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVY--SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 456666666 6789999999999998765322111101111346778888888776 9999999999999998655433
Q ss_pred HhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhccc
Q 002876 255 APYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (872)
Q Consensus 255 ~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (872)
...+. ..++.++..+.+.+++++..|+.++..++...+
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~----------------------------------------- 192 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP----------------------------------------- 192 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-----------------------------------------
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-----------------------------------------
Confidence 33332 567777788888888888888887777764210
Q ss_pred CCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhh-cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 002876 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI-TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (872)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~ 412 (872)
..|.. +.. . ..++.+.+.+ .+.++.++..++.+++.++... +.........+++
T Consensus 193 ----------~~~~~-------i~~---~----g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 193 ----------KCRDL-------VLA---N----GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALP 247 (528)
T ss_dssp ----------HHHHH-------HHH---T----TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHH
T ss_pred ----------hhHHH-------HHH---C----CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHH
Confidence 00000 000 0 1223333334 4466788888888998888764 2333344577889
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccC
Q 002876 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA 491 (872)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (872)
.+...+ .++++.++..++++++.++..... ....-.-..+++.++..+.+ ++.++..|+++|++++.....
T Consensus 248 ~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~------~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~- 319 (528)
T 4b8j_A 248 ALARLI-HSNDEEVLTDACWALSYLSDGTND------KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA- 319 (528)
T ss_dssp HHHHHT-TCCCHHHHHHHHHHHHHHTSSCHH------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHHHcCCHH------HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH-
Confidence 999999 999999999999999999874321 00000112467888888886 689999999999999753211
Q ss_pred CCCCCCCchhH-HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHH-HHHHHHHHHHHHHHHhhhcCChh
Q 002876 492 ISPSSPLTPFF-QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEAQKLSSD 569 (872)
Q Consensus 492 ~~~~~~l~~~l-~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~ 569 (872)
.....+ ..+++.++..+.+.. ++.++..++++|+.++...+......+ ..++|.+++.+...
T Consensus 320 -----~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--------- 383 (528)
T 4b8j_A 320 -----QTQCIIDHQALPCLLSLLTQNL--KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--------- 383 (528)
T ss_dssp -----HHHHHHTTTHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS---------
T ss_pred -----HHHHHHHhhhHHHHHHHHcCCC--cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC---------
Confidence 000011 235677777777653 467899999999999875433222222 25667777776531
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhH--HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhh-----
Q 002876 570 EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYA--DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQD----- 642 (872)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~----- 642 (872)
+. .++..++.+|..++....+. ...++ ..+++.+..++.+.+..++..++.+|+.++...+..
T Consensus 384 ~~----~v~~~a~~aL~nl~~~~~~~------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (528)
T 4b8j_A 384 EF----DIKKEAAWAISNATSGGSHD------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA 453 (528)
T ss_dssp CH----HHHHHHHHHHHHHHHHSCHH------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CH----HHHHHHHHHHHHHHcCCCHH------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 22 35667888888887653221 22232 357888899999999999999999999998766441
Q ss_pred -----hHhhhHH--HHHHHHhhhcCCChhhHHHHHHHHHHHHHH
Q 002876 643 -----FLKYMPE--FYKYVEMGLQNFEDYQVCAITVGVVGDLCR 679 (872)
Q Consensus 643 -----~~~~~~~--i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 679 (872)
+...+.. .+..+..... +.+.+++..|..++..+..
T Consensus 454 ~~~~~~~~~i~~~~~~~~l~~L~~-~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 454 GDVNVFSQMIDEAEGLEKIENLQS-HDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp CSCCHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHCC
T ss_pred ccccHHHHHHHHCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHCC
Confidence 2222222 3566666544 4556888888887776543
No 42
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.59 E-value=2.1e-09 Score=124.80 Aligned_cols=681 Identities=10% Similarity=0.077 Sum_probs=375.3
Q ss_pred CHHHHHHHHHHHHHHHhc----ChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHH
Q 002876 16 DGTVRKQAEESLKQYQEQ----NLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKA 91 (872)
Q Consensus 16 ~~~~r~~a~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 91 (872)
++.++++..+.+..+... +.|+++..+.+.+.+ ++..+..+..+|+....--..... ..++.+-+.
T Consensus 125 ~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~EEV~d~~~-------~~l~~~r~~ 194 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLSEEVFDFSS-------GQITQVKAK 194 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHTTSHH-------HHBCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHhccc-------ccccHHHHH
Confidence 467788888888776555 456788888877654 355666677776664331000000 001221122
Q ss_pred HHHH-----------HHHHhcCC-CChHHHHHHHHHHHHHHHhhcCCCC--chhHHHHH-HHhhcCCChhHHHHHHHHHH
Q 002876 92 QIKS-----------FILKTLSS-PAHDARSTASQVVAKVAGIELPHKQ--WPELIGAL-LSNIHQLPPHTKQATLETLG 156 (872)
Q Consensus 92 ~i~~-----------~ll~~l~~-~~~~vr~~~a~~l~~i~~~~~~~~~--~~~l~~~l-~~~l~~~~~~~r~~al~~l~ 156 (872)
.+++ .+...+.+ .++.+...+-.+++.+..-. +-+. =+++++.+ ...+ +++..|..|+.||.
T Consensus 195 ~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI-~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~ 271 (1073)
T 3gjx_A 195 HLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI-PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLT 271 (1073)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc-CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHH
Confidence 2222 22233332 35566655556665554211 1000 04567766 3554 35689999999999
Q ss_pred HhhhhccccccchhhHHHHHHHHH----hccc----------C-CCCCHHHHHHHHHHHHHhHhhchhhcc-ChhhHH--
Q 002876 157 YICEEVSSDAVEQDHVNKILTAVV----QGMN----------A-SESNNDVRLAATRALYNALGFAQANFS-NDMERD-- 218 (872)
Q Consensus 157 ~i~~~~~~~~l~~~~~~~i~~~l~----~~l~----------~-~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~~-- 218 (872)
.++..- .+.. ...+..+++.++ ..+. . .+.+.+.-..-...+..+.+....... ......
T Consensus 272 eIv~k~-~~~~-~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l 349 (1073)
T 3gjx_A 272 EIAGVS-VSQY-EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREAL 349 (1073)
T ss_dssp HHHHSC-SGGG-HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhcc-ccch-HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 988752 2222 223333333322 1111 0 122233333333444443321111111 011122
Q ss_pred -HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh-------------------------hHhhHHHHHHHHHHHHhcC
Q 002876 219 -YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK-------------------------LAPYIQDIFNITAKAVRED 272 (872)
Q Consensus 219 -~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-------------------------~~~~~~~l~~~~~~~~~~~ 272 (872)
..++.+......++.++-+.+++.|..+....+.. +.+.+..+...++..+.-+
T Consensus 350 ~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P 429 (1073)
T 3gjx_A 350 MEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKP 429 (1073)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 23445566666789999999999998887754321 2233444455555544322
Q ss_pred Ch---------h-hHH-----HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhh-hhhHHHHHHHHHhcccCCc
Q 002876 273 EE---------P-VAL-----QAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA-LPVLVPLLLETLLKQEEDQ 336 (872)
Q Consensus 273 ~~---------~-v~~-----~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~d~ 336 (872)
++ + +|. ..+++...+-+ +..+.... -......+.+.+...-..
T Consensus 430 ~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd--------------------~L~~lt~l~~~~~~~i~~~~l~~~~~~- 488 (1073)
T 3gjx_A 430 EEVLVVENDQGEVVREFMKDTDSINLYKNMRE--------------------TLVYLTHLDYVDTEIIMTKKLQNQVNG- 488 (1073)
T ss_dssp CCEEEEECSSSCEEEEECSSCHHHHHHHHHHH--------------------HHHHHHHHCHHHHHHHHHHHHHHHHTS-
T ss_pred ccccccCcccchHHHHHHhhcchHHHHHHHHH--------------------HHHHHhcCCHHHHHHHHHHHHHHHhcC-
Confidence 21 0 000 00000000000 00000000 012233344443321111
Q ss_pred ccCCccchHhHHHHHHHHHHHHHcC----CcchhchHHHHHhhhcCc---c--hhhhHHHHHHHHHhhCCCCCCcchHHH
Q 002876 337 DQDEGAWNIAMAGGTCLGLVARTVG----DDIVPLVMPFVEENITKQ---E--WRQREAATYAFGSILEGPSPEKLVPLV 407 (872)
Q Consensus 337 ~~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~l~~~l~~~~~~~---~--~~~r~aal~~l~~l~~~~~~~~~~~~~ 407 (872)
.+-.|..+.++.-+++.++.... +.++|.+++.+......+ + ..++...++.+|...+-. ..-.+++
T Consensus 489 --~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl--~~h~~~L 564 (1073)
T 3gjx_A 489 --TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL--RAHWKFL 564 (1073)
T ss_dssp --CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH--HHCHHHH
T ss_pred --CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH--HhCHHHH
Confidence 12358889999999999876553 256788888877655332 2 233444456777765543 1235678
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCC-cccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 408 NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET-PIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
..++..++..+ .+.++.|+.+|+.++..+++.++...... +.....|+..++..+.....+ .++-...-..+++.++
T Consensus 565 ~~vl~~L~~~m-~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 565 KTVVNKLFEFM-HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHHHHHHHT-TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 89999999999 99999999999999999999876421100 011245778888777776655 5666666778888888
Q ss_pred HhcccCCCCCCCCchhHHHHHHHHHHhhcc--------CCc-hhh---hhHHHHHHHHHHHHHccccCcHHHHHHHHHHH
Q 002876 486 QGFEDAISPSSPLTPFFQEIVQALLTVTHR--------EDA-GES---RLRTAAYETLNEVVRCSTDETAPMVMQLVPLI 553 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~--------~~~-~~~---~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 553 (872)
...+.. .....++..+++.....+.. .+. .++ .--...+++...++...|..+.+++..+++.+
T Consensus 644 ~~~p~~----~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~ 719 (1073)
T 3gjx_A 644 GAQTDQ----TVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDM 719 (1073)
T ss_dssp TTCCCH----HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HhCCCc----chHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHH
Confidence 765321 11233444444433332211 000 011 12235677777888889999999999999988
Q ss_pred HHHHHHHHh-------hhcCChhH-H--HHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccc
Q 002876 554 MMELHQTLE-------AQKLSSDE-R--EKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSAT 623 (872)
Q Consensus 554 ~~~l~~~~~-------~~~~~~~~-~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 623 (872)
++......+ ..+..... + .....++..++..+... ++..+....+...+++++++.++.-.+...+.
T Consensus 720 l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~---i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~ 796 (1073)
T 3gjx_A 720 LNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGW---VSRSNDPQMVAENFVPPLLDAVLIDYQRNVPA 796 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 876543221 11100000 1 11112333333444433 34333333444566777887777666554444
Q ss_pred hh-hHHHHHHHHHHHHhhhhhHhhhHHHHHHHHh----hhcC--CChhhHHHHHHHHHHHHHHHHhccccc----cHHHH
Q 002876 624 AH-EEAMLAIGALAYATGQDFLKYMPEFYKYVEM----GLQN--FEDYQVCAITVGVVGDLCRALEDKILP----YCDGI 692 (872)
Q Consensus 624 ~~-~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~----~l~~--~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~~i 692 (872)
.| .+++.+++.++..+|..+.+.++.++..++. ++++ .+-|+.|..-+.++..+...+...+.. ....+
T Consensus 797 ~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~ 876 (1073)
T 3gjx_A 797 AREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLV 876 (1073)
T ss_dssp GCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHH
Confidence 55 4678888999999999999998888877643 2321 334789999999999999997765544 34557
Q ss_pred HHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc-------hHHhHHHHHHHHHHHHhhc
Q 002876 693 MTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN-------FEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 693 ~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~-------~~~~l~~il~~l~~~l~~~ 746 (872)
++.++-.++.+ ++++-..++..+..+....... +..|.-.++.-++..+.+.
T Consensus 877 i~~i~wa~kh~--~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~ 935 (1073)
T 3gjx_A 877 LDSIIWAFKHT--MRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDT 935 (1073)
T ss_dssp HHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHcCCC--ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 78888888877 7788888898888887765421 2345555666666666544
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.59 E-value=4.2e-11 Score=133.33 Aligned_cols=488 Identities=10% Similarity=0.058 Sum_probs=301.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchh----HHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchh
Q 002876 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPE----LIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQD 170 (872)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~----l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~ 170 (872)
..+++++.+++...|+..--.+..++. ..++ .++.+.+.++++++.+|-.|+.+++.+.. ..
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~------~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--------~e 142 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVN------SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--------RE 142 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCC------CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--------HH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcc------CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--------HH
Confidence 357788899998888876666655552 3344 46677788889999999999999998843 23
Q ss_pred hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 002876 171 HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTY 250 (872)
Q Consensus 171 ~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 250 (872)
..+.+.+.+.+.+.+.|.++.||+.|+-++..+....++.... +.+++.+..++.|+++.++..++..+..++...
T Consensus 143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM----GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC----CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc----hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 4677788888888212899999999999999988766654432 246777788888999999999999999999988
Q ss_pred HHhhHhhHHHHHHHHHHHHhcC-------------ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhh
Q 002876 251 YEKLAPYIQDIFNITAKAVRED-------------EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (872)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~-------------~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (872)
++.+.++++.+++.+...+... ++-.+...++++..++..+ . .-....
T Consensus 219 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~------------------d-~~~~~~ 279 (621)
T 2vgl_A 219 PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE------------------D-PAVRGR 279 (621)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS------------------S-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC------------------C-HHHHHH
Confidence 8777777777777666655421 4556667777766655210 0 001112
Q ss_pred hhhHHHHHHHHHhcccCCcccCCccchH-hHHHHHHHHHHHHHcC-CcchhchHHHHHhhhcCcchhhhHHHHHHHHHhh
Q 002876 318 LPVLVPLLLETLLKQEEDQDQDEGAWNI-AMAGGTCLGLVARTVG-DDIVPLVMPFVEENITKQEWRQREAATYAFGSIL 395 (872)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~~~~~~~~-r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~ 395 (872)
+..+++.+++.+...... + .-...+. .....++...+....+ ..........+...+.+.+...|+.++.++..++
T Consensus 280 l~~~L~~il~~~~~~~ks-~-~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~ 357 (621)
T 2vgl_A 280 LTECLETILNKAQEPPKS-K-KVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA 357 (621)
T ss_dssp HHHHHHHHHHHHHSCCSC-S-SHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCccc-c-cccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 222333333322110000 0 0000010 1112233333333322 1233345556667777778899999999999998
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhH
Q 002876 396 EGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNV 473 (872)
Q Consensus 396 ~~~~~~~~~~~~~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v 473 (872)
.... . .+.+....+.++.++ . |++..||..++.++..++.. ..+..++..+...+.+ +...
T Consensus 358 ~~~~-~--~~~~~~~~~~i~~~L-~~d~d~~Ir~~aL~lL~~l~~~-------------~Nv~~Iv~eL~~yl~~~d~~~ 420 (621)
T 2vgl_A 358 SSEF-S--HEAVKTHIETVINAL-KTERDVSVRQRAVDLLYAMCDR-------------SNAQQIVAEMLSYLETADYSI 420 (621)
T ss_dssp TCTT-T--HHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHCCH-------------HHHHHHHHHHHHHHHHCCHHH
T ss_pred hccC-c--HHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHcCh-------------hhHHHHHHHHHHHHHhcCHHH
Confidence 7541 1 233455566777888 8 99999999999998887753 2355788888888775 6788
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHH
Q 002876 474 AEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLI 553 (872)
Q Consensus 474 ~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 553 (872)
+..++.+++.++..+. .....|+..+++. +.... ..+...+...+..++...+. ...+ .+..+
T Consensus 421 ~~~~v~~I~~la~k~~------~~~~~~v~~Ll~l----l~~~~---~~v~~ev~~~l~~ii~~~~~-~~~~---~~~~l 483 (621)
T 2vgl_A 421 REEIVLKVAILAEKYA------VDYTWYVDTILNL----IRIAG---DYVSEEVWYRVIQIVINRDD-VQGY---AAKTV 483 (621)
T ss_dssp HHHHHHHHHHHHHHHC------SSTHHHHHHHHHH----HHHHG---GGSCSHHHHHHHHHHGGGCS-CHHH---HHHHH
T ss_pred HHHHHHHHHHHHHhcC------CcHHHHHHHHHHH----HHhhc---ccchHHHHHHHHHHHhCChh-HHHH---HHHHH
Confidence 8889999999988763 3344455444444 33221 12333455666666665543 2222 22333
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHH
Q 002876 554 MMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIG 633 (872)
Q Consensus 554 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 633 (872)
++.+.. ++.++ .+...+.++++.....+...+. +. -..++..+...+...+..++..++.++.
T Consensus 484 ~~~l~~--------~~~~~---~li~~~~wilGEy~~~~~~~~~----~~--p~~~l~~l~~~~~~~~~~v~~~~Lta~~ 546 (621)
T 2vgl_A 484 FEALQA--------PACHE---NLVKVGGYILGEFGNLIAGDPR----SS--PLIQFNLLHSKFHLCSVPTRALLLSTYI 546 (621)
T ss_dssp HHHHTS--------SSCCH---HHHHHHHHHHHHHTHHHHSSTT----SC--HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHcC--------ccchH---HHHHHHHHHhcchHHHhcccCC----CC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 333321 11111 2334466888887666543210 10 1234555666666777889999999999
Q ss_pred HHHHHhhhhhHhhhHHHHHHHHhhhcC--CChhhHHHHHHHHHHHH
Q 002876 634 ALAYATGQDFLKYMPEFYKYVEMGLQN--FEDYQVCAITVGVVGDL 677 (872)
Q Consensus 634 ~l~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~v~~~a~~~l~~l 677 (872)
++....++ ....+..+++.... +.+.++|..|...+.-+
T Consensus 547 Kl~~~~p~-----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 547 KFVNLFPE-----VKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHCGG-----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHChH-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 98765543 22223333333332 55779999887766554
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.59 E-value=1.5e-12 Score=145.17 Aligned_cols=471 Identities=14% Similarity=0.095 Sum_probs=288.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcC--------hhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHH
Q 002876 6 TQILLNAQSVDGTVRKQAEESLKQYQEQN--------LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (872)
Q Consensus 6 ~~~l~~~~s~~~~~r~~a~~~L~~~~~~~--------~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (872)
..++.-+.++|..+|..|...|..+...+ .++.+..|...+.+ +.++.+|..|+..|++...... ..
T Consensus 20 ~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~--~~-- 94 (529)
T 1jdh_A 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE--GL-- 94 (529)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHH--HH--
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCch--hH--
Confidence 33444445789999999999999875431 14678888888875 3478999999999998654210 00
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC-C--chhHHHHHHHhhcCCChhHHHHHHHH
Q 002876 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK-Q--WPELIGALLSNIHQLPPHTKQATLET 154 (872)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-~--~~~l~~~l~~~l~~~~~~~r~~al~~ 154 (872)
. .-......+.+++.+.++++.++..++.++..++....... . -...++.|.+.+.++++.++..+..+
T Consensus 95 --~------~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 95 --L------AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp --H------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred --H------HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 00112345678899999999999999999999997641100 0 25688999999999888999888888
Q ss_pred HHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHH
Q 002876 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVK 234 (872)
Q Consensus 155 l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 234 (872)
+..++... ++.-..-.-...++.++..+.+ ..+..++..+..++.++... +.. .........++.+..++.+++++
T Consensus 167 L~~la~~~-~~~~~~i~~~~~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T 1jdh_A 167 LQILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp HHHHHTTC-HHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTS-TTH-HHHHHHTTHHHHHHTTTTSSCHH
T ss_pred HHHHHhCC-HHHHHHHHHCCCHHHHHHHHHh-CChHHHHHHHHHHHHHHhcC-ccc-HHHHHHCCCHHHHHHHHhCCChH
Confidence 88776532 1110000112345566666663 34566777888888776531 110 00000124677888888888999
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHH
Q 002876 235 IRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (872)
Q Consensus 235 ~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (872)
++..++.+|..+....+.. .....+++.+...+.+.+++++..++..+..++....+.. ..+.
T Consensus 243 ~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~---------------~~~~ 305 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK---------------MMVC 305 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH---------------HHHH
Confidence 9999999999988764432 2235678888888888899999999998888875211100 0111
Q ss_pred HhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC------cch-hchHHHHHhhhcCcc-hhhhHH
Q 002876 315 KHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD------DIV-PLVMPFVEENITKQE-WRQREA 386 (872)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~------~~~-~~l~~~l~~~~~~~~-~~~r~a 386 (872)
+ ...++.++..+...++ .+.++..|..+|..++...+. .+. ...++.+.+.+.+++ |.+|..
T Consensus 306 ~---~~~v~~L~~ll~~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 306 Q---VGGIEALVRTVLRAGD-------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp H---TTHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred H---cCChHHHHHHHHccCC-------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 1 1245666666543211 146777777888777543222 111 134566777777665 799999
Q ss_pred HHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHH--hhhhccCC------------CCCCccc
Q 002876 387 ATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGR--MFEFLHGS------------TLETPII 451 (872)
Q Consensus 387 al~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~--l~~~~~~~------------~~~~~~~ 451 (872)
++.+++.++.+. ....... ..+++.+...+ .++++.+|..++|++++ +......+ ....+..
T Consensus 376 a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~ 452 (529)
T 1jdh_A 376 TVGLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN 452 (529)
T ss_dssp HHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHH-HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHH-HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchH
Confidence 999999998753 2222222 35788899999 88889999988887776 11100000 0000000
Q ss_pred Ccc-chHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHHHhhccCCchhhhhHHHH
Q 002876 452 NQG-NCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGESRLRTAA 527 (872)
Q Consensus 452 ~~~-~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~~~l~~~~~~~~~v~~~~ 527 (872)
... .-...++.++..+.+ ++.++..+++++.++... ......+ ...++.+...+.+. ++.++..+
T Consensus 453 ~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--------~~~~~~i~~~~~~~~L~~l~~~~---~~~v~~~a 521 (529)
T 1jdh_A 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--------KEAAEAIEAEGATAPLTELLHSR---NEGVATYA 521 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--------HHHHHHHHHTTCHHHHHHGGGCS---SHHHHHHH
T ss_pred HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--------HHHHHHHHHcCChHHHHHHhcCC---CHHHHHHH
Confidence 000 001245777788876 689999999999998532 0001111 12346666666654 57788888
Q ss_pred HHHHHHH
Q 002876 528 YETLNEV 534 (872)
Q Consensus 528 ~~~l~~l 534 (872)
..++..+
T Consensus 522 ~~aL~~l 528 (529)
T 1jdh_A 522 AAVLFRM 528 (529)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888654
No 45
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.58 E-value=2.4e-12 Score=146.09 Aligned_cols=467 Identities=14% Similarity=0.104 Sum_probs=299.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHH
Q 002876 6 TQILLNAQSVDGTVRKQAEESLKQYQEQNL--------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (872)
Q Consensus 6 ~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~--------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (872)
..++..+.+++..+|..|...|..+...+. ++.+..|...+.+ +.+..+|..|+..|++...... ..
T Consensus 17 ~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~~--~~-- 91 (644)
T 2z6h_A 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE--GL-- 91 (644)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSHH--HH--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChh--hH--
Confidence 344445557899999999999998876532 3678888888876 4578999999999987554210 00
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC-C--chhHHHHHHHhhcCCChhHHHHHHHH
Q 002876 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK-Q--WPELIGALLSNIHQLPPHTKQATLET 154 (872)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-~--~~~l~~~l~~~l~~~~~~~r~~al~~ 154 (872)
.. -......+.|++.|.++++.++..++.++..++....+.. . -...++.|++.+.++++..+..++.+
T Consensus 92 --~~------i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 92 --LA------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp --HH------HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred --HH------HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 00 0111345678899999999999999999999997641100 0 14688999999999888888888888
Q ss_pred HHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHH
Q 002876 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVK 234 (872)
Q Consensus 155 l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 234 (872)
|..++... ++.-..-.-...++.++..+.+ .....++..++.++.++... +.. .........++.+..++.+++..
T Consensus 164 L~~La~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~-~~~-~~~l~~~g~l~~L~~ll~~~~~~ 239 (644)
T 2z6h_A 164 LQILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLTDPSQR 239 (644)
T ss_dssp HHHHHTTC-HHHHHHHHHTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTC-TTH-HHHHHHTTHHHHHHTTTTCSCHH
T ss_pred HHHHHhcC-cHHHHHHHHcCChHHHHHHHHc-CChHHHHHHHHHHHHHHhcC-ccc-HHHHHHCCCHHHHHHHHhcCCHH
Confidence 88877532 1110001112346677777764 34567888899998886531 110 00000123577788888888999
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHH
Q 002876 235 IRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFI 314 (872)
Q Consensus 235 ~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (872)
++..++.+|..+....+.. .....+++.+...+.+.+++++..+..++..++....... ....
T Consensus 240 ~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~---------------~~v~ 302 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK---------------MMVC 302 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH---------------HHHH
Confidence 9999999999998754432 2345778888888888899999999999888875311100 0111
Q ss_pred HhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCc------c-hhchHHHHHhhhcCcc-hhhhHH
Q 002876 315 KHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD------I-VPLVMPFVEENITKQE-WRQREA 386 (872)
Q Consensus 315 ~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~------~-~~~l~~~l~~~~~~~~-~~~r~a 386 (872)
+ ...++.++..+....+ .+.++..|..+|..++...+.. + ....++.+.+.+.+++ |.+|.+
T Consensus 303 ~---~g~v~~Lv~lL~~~~~-------~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~ 372 (644)
T 2z6h_A 303 Q---VGGIEALVRTVLRAGD-------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372 (644)
T ss_dssp H---TTHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHH
T ss_pred H---cCCHHHHHHHHHccCC-------cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHH
Confidence 1 1245666666653211 1367777888888775432210 1 1235667777777654 899999
Q ss_pred HHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHH----------------------HHHHHHHHhhhhccC
Q 002876 387 ATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKD----------------------TTAWTLGRMFEFLHG 443 (872)
Q Consensus 387 al~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~----------------------~a~~~l~~l~~~~~~ 443 (872)
++.+++.++.+. ....... ..+++.+...+ .+.++.+|. .++.++..++....
T Consensus 373 a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL-~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~- 448 (644)
T 2z6h_A 373 TVGLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH- 448 (644)
T ss_dssp HHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHH-HHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH-
T ss_pred HHHHHHHHccCH--HHHHHHHHcCCHHHHHHHH-hccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH-
Confidence 999999998753 2222222 35677777777 665554444 45555554443210
Q ss_pred CCCCCcccCccch--HHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHH--HHHHHHHHhhccCCc
Q 002876 444 STLETPIINQGNC--QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ--EIVQALLTVTHREDA 518 (872)
Q Consensus 444 ~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~--~i~~~l~~~l~~~~~ 518 (872)
....+ ...++.+++.+.+ ++.++..++++|.+++..- .....+. ..++.|...+.+.
T Consensus 449 --------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~--------~~~~~i~~~g~l~~L~~ll~~~-- 510 (644)
T 2z6h_A 449 --------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------EAAEAIEAEGATAPLTELLHSR-- 510 (644)
T ss_dssp --------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--------HHHHHHHHTTCHHHHHHHTTCS--
T ss_pred --------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--------HHHHHHHHcCChhHHHHHHcCC--
Confidence 00111 1356778888876 6889999999999986420 0111111 1245666666654
Q ss_pred hhhhhHHHHHHHHHHHHHccc
Q 002876 519 GESRLRTAAYETLNEVVRCST 539 (872)
Q Consensus 519 ~~~~v~~~~~~~l~~l~~~~~ 539 (872)
++.+|..+..+|..+....+
T Consensus 511 -~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 511 -NEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp -CHHHHHHHHHHHHHHTTTSC
T ss_pred -CHHHHHHHHHHHHHHhccCc
Confidence 57899999999988876553
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.54 E-value=9.8e-12 Score=138.49 Aligned_cols=487 Identities=11% Similarity=0.053 Sum_probs=293.7
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhh--HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhc
Q 002876 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDH--VNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~--~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (872)
...++.|...++++++.+|..|+.++..++..- +.. ... ....++.+++.+.+ +.++.+|..|+.++.++...
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~--~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~- 90 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASR--HAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH- 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHH--HHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTS-
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccH--HHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcC-
Confidence 457888888888888999999999999887643 110 111 12466777777753 45889999999999986532
Q ss_pred hhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH-HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002876 208 QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI-QDIFNITAKAVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (872)
++. .........++.+..+++++++.++..++.+|..++...+..-.... ...++.+...+.+.+.+++..+..++..
T Consensus 91 ~~~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 91 REG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169 (529)
T ss_dssp HHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred chh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 110 00001123677888889899999999999999999886433211111 3578888888888888888887777776
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcC--Ccc
Q 002876 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVG--DDI 364 (872)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~ 364 (872)
++....+. ...+.. ...++.++..+...+. ...+..+..+|..++..-. ..+
T Consensus 170 la~~~~~~---------------~~~i~~---~~~i~~L~~ll~~~~~--------~~~~~~a~~~L~~l~~~~~~~~~~ 223 (529)
T 1jdh_A 170 LAYGNQES---------------KLIILA---SGGPQALVNIMRTYTY--------EKLLWTTSRVLKVLSVCSSNKPAI 223 (529)
T ss_dssp HHTTCHHH---------------HHHHHH---TTHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHhCCHHH---------------HHHHHH---CCCHHHHHHHHHhCCh--------HHHHHHHHHHHHHHhcCcccHHHH
Confidence 65311000 001111 1235556665543211 1334455566666653211 011
Q ss_pred h-hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccC
Q 002876 365 V-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (872)
Q Consensus 365 ~-~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
. ...++.+.+.+.+++...+..++.++..++....... ....+++.+...+ .++++.+|..+++++++++...+.
T Consensus 224 ~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp HHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHH
Confidence 1 2356667777777788889999999999987653221 2357789999999 999999999999999999874310
Q ss_pred CCCCCcccCccchHHHHHHHHHhccC---ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHHHhhccCCc
Q 002876 444 STLETPIINQGNCQQIISVLLQSMKD---VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDA 518 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~~~l~~~~~ 518 (872)
....-.-...++.+++.+.+ ++.++..|+.+|.+++...+. .......+ ...++.+...+.+.+
T Consensus 300 ------~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~i~~~~~i~~L~~lL~~~~- 368 (529)
T 1jdh_A 300 ------NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE----AEMAQNAVRLHYGLPVVVKLLHPPS- 368 (529)
T ss_dssp ------HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT----HHHHHHHHHHTTCHHHHHHTTSTTC-
T ss_pred ------HHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHcCChhHHHHHhcccc-
Confidence 00000111356677777753 478999999999999643110 00000000 134677788887654
Q ss_pred hhhhhHHHHHHHHHHHHHccccCcHHHH-HHHHHHHHHHHHHHHhhh------------cCChhHHHHHHHHHHHHHHHH
Q 002876 519 GESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEAQ------------KLSSDEREKQNEIQGLLCGCL 585 (872)
Q Consensus 519 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l 585 (872)
++.++..+++++..+...... ..... ..++|.+++.+....... ..+...++ .++..++.++
T Consensus 369 -~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~---~i~~~~~~al 443 (529)
T 1jdh_A 369 -HWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME---EIVEGCTGAL 443 (529)
T ss_dssp -CHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHH---HHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHH---HHHHHHHHHH
Confidence 357888999999988864322 22222 256777777765421100 00000011 1222344444
Q ss_pred HHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcCCCh
Q 002876 586 QVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQNFED 663 (872)
Q Consensus 586 ~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~ 663 (872)
..+.. .......+.. ...++.+..++.+++..++..+..+++.++.. +.....+. ..++.|...+.+ .+
T Consensus 444 ~~L~~----~~~~~~~l~~--~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~-~~ 514 (529)
T 1jdh_A 444 HILAR----DVHNRIVIRG--LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHS-RN 514 (529)
T ss_dssp HHHTT----SHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGC-SS
T ss_pred HHHhc----CchHHHHHhc--cCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcC-CC
Confidence 44422 1000000111 13567788889998888999999999887632 22222222 367888887765 46
Q ss_pred hhHHHHHHHHHHHH
Q 002876 664 YQVCAITVGVVGDL 677 (872)
Q Consensus 664 ~~v~~~a~~~l~~l 677 (872)
.+++..|.+++..+
T Consensus 515 ~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 515 EGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 68999999888765
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.6e-13 Score=129.38 Aligned_cols=207 Identities=15% Similarity=0.210 Sum_probs=160.1
Q ss_pred HHHhhhcCcchhhhHHHHHHHHH-hhCCCCCCcc--hHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc-CCCC
Q 002876 371 FVEENITKQEWRQREAATYAFGS-ILEGPSPEKL--VPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH-GSTL 446 (872)
Q Consensus 371 ~l~~~~~~~~~~~r~aal~~l~~-l~~~~~~~~~--~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~~ 446 (872)
-+.+.+.+.+|..|.+++..++. +++++. +.. ...+..++..+...+.+|.|..||..|+.+++.+++... .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~-~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~--- 95 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTK-KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP--- 95 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCC-CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc---
Confidence 35566788999999999999999 987652 322 223356677777777459999999999999999999874 2
Q ss_pred CCcccCc-cchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhH
Q 002876 447 ETPIINQ-GNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLR 524 (872)
Q Consensus 447 ~~~~~~~-~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~ 524 (872)
... .|...++|.++..++| .+.|+..+..++..+++.+. +....+|++.+++.++..+.+. ++.+|
T Consensus 96 ----~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-----~~~~~~~l~~ll~~l~~~l~~k---~~~vk 163 (249)
T 2qk1_A 96 ----GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-----PLASSGRNEDMLKDILEHMKHK---TPQIR 163 (249)
T ss_dssp ----TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-----TTCTTCTTHHHHHHHHHHTTCS---SHHHH
T ss_pred ----cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-----ccccCCcHHHHHHHHHHHHcCC---ChHHH
Confidence 235 7999999999999998 58999999999999999863 3333345999999999999765 47788
Q ss_pred HHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhH
Q 002876 525 TAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQ 604 (872)
Q Consensus 525 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 604 (872)
..++.++..++...+... ..+.+
T Consensus 164 ~~al~~l~~~~~~~~~~~---------------------------------------------------------~~l~~ 186 (249)
T 2qk1_A 164 MECTQLFNASMKEEKDGY---------------------------------------------------------STLQR 186 (249)
T ss_dssp HHHHHHHHHHHHHCCSCS---------------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHcCCcc---------------------------------------------------------hhHHH
Confidence 777777766665544210 01445
Q ss_pred hH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhh-hhHhhhHHH
Q 002876 605 YA-DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQ-DFLKYMPEF 650 (872)
Q Consensus 605 ~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~i 650 (872)
++ +.+++.+.+++.+++..+|..|+.+++.++...|+ .+.||++.+
T Consensus 187 ~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 67 77888888888888899999999999999999996 477776664
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.50 E-value=6.7e-11 Score=131.72 Aligned_cols=477 Identities=12% Similarity=0.073 Sum_probs=281.3
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 002876 41 SLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVA 120 (872)
Q Consensus 41 ~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~ 120 (872)
.....+. +.+...|+++-..+..+.+. .++..-.+-+.+.+-+.++|+.+|..|..+++.+.
T Consensus 78 ~vvkl~~--s~~~~~Krl~YL~l~~~~~~----------------~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~ 139 (621)
T 2vgl_A 78 EAVNLLS--SNRYTEKQIGYLFISVLVNS----------------NSELIRLINNAIKNDLASRNPTFMGLALHCIANVG 139 (621)
T ss_dssp HHHHGGG--CSCHHHHHHHHHHHHHSCCC----------------CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHccC----------------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC
Confidence 3334444 34788888888888776652 35555666788888899999999999999998886
Q ss_pred HhhcCCCCchhHHHHHHHhh--cCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHH
Q 002876 121 GIELPHKQWPELIGALLSNI--HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATR 198 (872)
Q Consensus 121 ~~~~~~~~~~~l~~~l~~~l--~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~ 198 (872)
..+ ..+.+.+.+.+++ .+.++.+|..|+.++..++... |+.+ .. +.+++.+...+. |.++.|+.+|+.
T Consensus 140 ~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~-~~--~~~~~~l~~lL~--d~d~~V~~~a~~ 209 (621)
T 2vgl_A 140 SRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLV-PM--GDWTSRVVHLLN--DQHLGVVTAATS 209 (621)
T ss_dssp CHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGC-CC--CSCHHHHHHHTT--CSCHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhc-Cc--hhHHHHHHHHhC--CCCccHHHHHHH
Confidence 432 4567888899999 8889999999999999999866 7766 21 244555666666 889999999999
Q ss_pred HHHHhHhhchhhccChhhHHHHHHHHHHhhcCC-------------CHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHH
Q 002876 199 ALYNALGFAQANFSNDMERDYIMRVVCEATLSP-------------EVKIRQAAFECLVAISSTYYEKLAPYIQDIFNIT 265 (872)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-------------~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~ 265 (872)
++..+...-+..+.. ..+.+++.+..++... ++-.+...++.+..+...........+..++..+
T Consensus 210 ~l~~i~~~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~i 287 (621)
T 2vgl_A 210 LITTLAQKNPEEFKT--SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETI 287 (621)
T ss_dssp HHHHHHHHCHHHHTT--HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHH--HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 999877544433321 1233444444443211 5667777777777655422112233333444444
Q ss_pred HHHHhcC---------C--hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccC
Q 002876 266 AKAVRED---------E--EPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (872)
Q Consensus 266 ~~~~~~~---------~--~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (872)
+..+.+. + ..+...+..++..+.. . .+.....+..+...+.. .
T Consensus 288 l~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--------------------~----~~~~~~~~~~L~~~L~~--~ 341 (621)
T 2vgl_A 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS--------------------E----PNLLVRACNQLGQFLQH--R 341 (621)
T ss_dssp HHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--------------------C----HHHHHHHHHHHHHHSSC--S
T ss_pred HHhhccCcccccccccchHHHHHHHHHHHHHhcCC--------------------c----HHHHHHHHHHHHHHhcC--C
Confidence 4333221 1 1344444444333210 0 12222233444443321 1
Q ss_pred CcccCCccchHhHHHHHHHHHHHHHcCC-cchhchHHHHHhhhc-CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 002876 335 DQDQDEGAWNIAMAGGTCLGLVARTVGD-DIVPLVMPFVEENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (872)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~~~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~ 412 (872)
.-++|..|..++..++...+. ..+....+.+...+. +++..+|..++..+..++.. ..+..++.
T Consensus 342 -------~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-------~Nv~~Iv~ 407 (621)
T 2vgl_A 342 -------ETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-------SNAQQIVA 407 (621)
T ss_dssp -------CHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-------HHHHHHHH
T ss_pred -------CcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-------hhHHHHHH
Confidence 127788888888777765442 233344455556666 88888999999888887643 23677778
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccC
Q 002876 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDA 491 (872)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (872)
.+...+ .+.+..+|..+...++.++..++. ... ..+..+++.+.+ ...+...+...+..++...
T Consensus 408 eL~~yl-~~~d~~~~~~~v~~I~~la~k~~~-------~~~----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~--- 472 (621)
T 2vgl_A 408 EMLSYL-ETADYSIREEIVLKVAILAEKYAV-------DYT----WYVDTILNLIRIAGDYVSEEVWYRVIQIVINR--- 472 (621)
T ss_dssp HHHHHH-HHCCHHHHHHHHHHHHHHHHHHCS-------STH----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG---
T ss_pred HHHHHH-HhcCHHHHHHHHHHHHHHHHhcCC-------cHH----HHHHHHHHHHHhhcccchHHHHHHHHHHHhCC---
Confidence 888888 788889999999999999987752 223 444444444442 2334444555666666542
Q ss_pred CCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC--cHHHHHHHHHHHHHHHHHHHhhhcCChh
Q 002876 492 ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE--TAPMVMQLVPLIMMELHQTLEAQKLSSD 569 (872)
Q Consensus 492 ~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 569 (872)
..+..| .+..++..+.++.. ...+...+.|.+|......... ..| ..++..+.+.+. .+
T Consensus 473 ----~~~~~~---~~~~l~~~l~~~~~-~~~li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~---------~~ 533 (621)
T 2vgl_A 473 ----DDVQGY---AAKTVFEALQAPAC-HENLVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFH---------LC 533 (621)
T ss_dssp ----CSCHHH---HHHHHHHHHTSSSC-CHHHHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHT---------TS
T ss_pred ----hhHHHH---HHHHHHHHHcCccc-hHHHHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhc---------cC
Confidence 234333 45666777766543 2234345568888776554432 111 122222322221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHh--ccccchhhHHHHHHHHH
Q 002876 570 EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFA--IRSATAHEEAMLAIGAL 635 (872)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~~~a~~~l~~l 635 (872)
+. .++..++.++..+....+. ..+ .+...+-.... +.+.++|+.|...+.-+
T Consensus 534 ~~----~v~~~~Lta~~Kl~~~~p~-------~~~---~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 534 SV----PTRALLLSTYIKFVNLFPE-------VKA---TIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp CH----HHHHHHHHHHHHHHHHCGG-------GHH---HHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHHHHHHChH-------HHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 12 3455566666666554321 222 22222222333 67788998887665443
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.46 E-value=1.3e-12 Score=143.21 Aligned_cols=403 Identities=15% Similarity=0.148 Sum_probs=254.9
Q ss_pred HHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCC
Q 002876 369 MPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE 447 (872)
Q Consensus 369 ~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
++-+.+.+++.+...+..|...+..+...-....+...+ ..++|.++..|..+.++.++..|+|+|++++...+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e---- 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE---- 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH----
Confidence 455667788888888888988988876543212233333 457899999992355689999999999999875421
Q ss_pred CcccCccch-HHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHHHhhccCCch--hh
Q 002876 448 TPIINQGNC-QQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAG--ES 521 (872)
Q Consensus 448 ~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~~~l~~~~~~--~~ 521 (872)
...... ...+|.|++.|.+ ++.++..|+|+|++++...+ .....+ ...++.++..+...+.. ..
T Consensus 135 ---~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~-------~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 135 ---QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS-------AFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp ---HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-------HHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred ---HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-------HHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 111111 2478899999986 68999999999999975421 111111 12456677777654421 12
Q ss_pred hhHHHHHHHHHHHHHcccc-CcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Q 002876 522 RLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (872)
Q Consensus 522 ~v~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 600 (872)
.+...+.+++..+...... ........++|.+...+.. .+. .++..++.+|..+... ..+
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~---------~~~----~v~~~A~~aL~~L~~~--~~~---- 265 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH---------NDP----EVLADSCWAISYLTDG--PNE---- 265 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC---------SCH----HHHHHHHHHHHHHTSS--CHH----
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc---------CCH----HHHHHHHHHHHHHhhc--hhh----
Confidence 3455677888887775432 2334456677777766532 222 2455677777776421 100
Q ss_pred HhhHh-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh-HHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002876 601 VFMQY-ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM-PEFYKYVEMGLQNFEDYQVCAITVGVVGDLC 678 (872)
Q Consensus 601 ~~~~~-~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 678 (872)
..... ...+++.+.+++.+++..++..++.+++.++..........+ ..++|.|...+.+. +..++..++++++.++
T Consensus 266 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~ 344 (510)
T 3ul1_B 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNIT 344 (510)
T ss_dssp HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHT
T ss_pred hHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 01111 124677888999999999999999999999764443322222 24667777777755 4589999999999987
Q ss_pred HHHhccccccH-HHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH--HHHHHHHHHHhhccCCCCCCcc
Q 002876 679 RALEDKILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM--YAMPMLQSAAELSVHTSGVDDD 755 (872)
Q Consensus 679 ~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~--~il~~l~~~l~~~~~~~~~d~~ 755 (872)
........... ..+++.++.++.+. +..+|..+.++++.++.........++- .+++.|...+... |
T Consensus 345 a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~------d-- 414 (510)
T 3ul1_B 345 AGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK------D-- 414 (510)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS------C--
T ss_pred cCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC------C--
Confidence 54332222111 25788999999888 6789999999999998764433333332 4678888887654 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 002876 756 MTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPH--ILQFLDSLYMEKDMDDVVTKTAIGVLGDL 822 (872)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~~v~~~a~~~l~~i 822 (872)
..++..+++++..++..-........+...++. .++.+..+.. ..+.++++.|...+...
T Consensus 415 -----~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~--~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 415 -----TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR--HENESVYKASLNLIEKY 476 (510)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 246667888888777642211011222223332 3455555544 36889999998887554
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.46 E-value=2.8e-12 Score=141.55 Aligned_cols=406 Identities=15% Similarity=0.137 Sum_probs=255.9
Q ss_pred chHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCC
Q 002876 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (872)
Q Consensus 367 ~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
..++-+.+.+.+++...+..|+..+..+........+...+ ..++|.++..+..+.++.++..|+|+|++++.....
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~-- 153 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE-- 153 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH--
Confidence 34556667778888888888888888776433212233333 457899999983356799999999999999875421
Q ss_pred CCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHHHhhccCCch--h
Q 002876 446 LETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAG--E 520 (872)
Q Consensus 446 ~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~~~l~~~~~~--~ 520 (872)
....-.-...+|.|+..+.+ ++.++..|+|+|++++.... .....+ ...++.++..+...+.. .
T Consensus 154 ----~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~-------~~r~~i~~~g~i~~Ll~lL~~~~~~~~~ 222 (529)
T 3tpo_A 154 ----QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGS-------AFRDLVIKHGAIDPLLALLAVPDLSTLA 222 (529)
T ss_dssp ----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-------HHHHHHHHTTCHHHHHHTTCSSCGGGSC
T ss_pred ----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCH-------HHHHHHHHcCCcHHHHHHHhccchhHhH
Confidence 00111122478889998886 68999999999999975321 111111 12456677777654421 1
Q ss_pred hhhHHHHHHHHHHHHHcccc-CcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Q 002876 521 SRLRTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTK 599 (872)
Q Consensus 521 ~~v~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 599 (872)
..+...+.+++..+...... ........++|.+...+.. .++ .++..++.+|..+...- .+
T Consensus 223 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~---------~~~----~v~~~a~~aL~~l~~~~--~~--- 284 (529)
T 3tpo_A 223 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH---------NDP----EVLADSCWAISYLTDGP--NE--- 284 (529)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS---------SCH----HHHHHHHHHHHHHHSSC--HH---
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC---------CcH----HHHHHHHHHHHHhhhhh--hh---
Confidence 23455677888887765532 2334456677777766532 222 24456777777765321 10
Q ss_pred hHhhHh-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh-HHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002876 600 YVFMQY-ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM-PEFYKYVEMGLQNFEDYQVCAITVGVVGDL 677 (872)
Q Consensus 600 ~~~~~~-~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 677 (872)
..... ...+++.+.+++.+++..++..++.+++.++..........+ ..+++.|...+.+. +..++..|+++++.+
T Consensus 285 -~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl 362 (529)
T 3tpo_A 285 -RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNI 362 (529)
T ss_dssp -HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred -hHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 01111 124677888899999999999999999999854433322222 34677788888755 458999999999998
Q ss_pred HHHHhccccccH-HHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH--HHHHHHHHHHhhccCCCCCCc
Q 002876 678 CRALEDKILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM--YAMPMLQSAAELSVHTSGVDD 754 (872)
Q Consensus 678 ~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~--~il~~l~~~l~~~~~~~~~d~ 754 (872)
+........... ..+++.++.++.+. +..++..++++|+.++.........++- .+++.|...+... |
T Consensus 363 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~------d- 433 (529)
T 3tpo_A 363 TAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK------D- 433 (529)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS------C-
T ss_pred hcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC------C-
Confidence 764332222222 24788999999888 6789999999999998754433333332 3688888888654 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 002876 755 DMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPH--ILQFLDSLYMEKDMDDVVTKTAIGVLGDL 822 (872)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~~v~~~a~~~l~~i 822 (872)
..++..+++++..++..-........+..+++. .++.+..+.. ..+.+++..|...+..-
T Consensus 434 ------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~--~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 434 ------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR--HENESVYKASLNLIEKY 495 (529)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG--CSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 245666788887777532111011122222222 2344444444 36899999998886554
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.8e-12 Score=126.89 Aligned_cols=206 Identities=10% Similarity=0.134 Sum_probs=155.8
Q ss_pred cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHhhhhc
Q 002876 363 DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ-DPNNHVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 363 ~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~l~~~~ 441 (872)
++.+.+-+-+.+.+.|.+|..|.+|+..+..++++.. ......+..+++.+...+ . |++..||..|+.+++.++...
T Consensus 11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~-~~~~~~~~~i~~~L~~~l-~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHP-KLENGEYGALVSALKKVI-TKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCS-SBCCCCCHHHHHHHHHHH-HHCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444456667788999999999999999988742 222233467788888888 7 999999999999999999987
Q ss_pred cCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchh
Q 002876 442 HGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGE 520 (872)
Q Consensus 442 ~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~ 520 (872)
+. ....|...++|.++..+.| ++.||..++.++..++... .++.+++.+...+.+. +
T Consensus 89 ~~-------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------------~~~~ll~~l~~~l~~~---~ 146 (242)
T 2qk2_A 89 AK-------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------------SLEAQQESIVESLSNK---N 146 (242)
T ss_dssp GG-------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------------CHHHHHHHHHHHTTCS---C
T ss_pred hh-------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHcCC---C
Confidence 52 2357889999999999998 6899999999999997642 2567788888887754 4
Q ss_pred hhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Q 002876 521 SRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (872)
Q Consensus 521 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 600 (872)
+.+|..++..++.++...+. . .
T Consensus 147 ~~vr~~~l~~l~~~l~~~~~------------------------------------------------------~----~ 168 (242)
T 2qk2_A 147 PSVKSETALFIARALTRTQP------------------------------------------------------T----A 168 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCG------------------------------------------------------G----G
T ss_pred hHHHHHHHHHHHHHHHHcCC------------------------------------------------------C----C
Confidence 67776666666555444321 0 0
Q ss_pred HhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhh-hHhhhHHH
Q 002876 601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQD-FLKYMPEF 650 (872)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~i 650 (872)
.+.++++.+++.+..+++++++.+|..|..+++.++...|.. +.+|++.+
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 034566778888888888888889999999999999999975 67776654
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.44 E-value=6.9e-11 Score=129.48 Aligned_cols=385 Identities=14% Similarity=0.120 Sum_probs=259.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--Chh-------HHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhh
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NLP-------GFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~--~~~-------~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (872)
.+..+++.+.|.|.+.|-+|.+.+.++-.. +|| |.++.|.+.|.+ +.++.++..|+..|.|....
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~----- 131 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASG----- 131 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTS-----
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcC-----
Confidence 378899999999999999999999876433 443 578889999876 44789999999999997642
Q ss_pred HHHhhhhccCCChHHHH-----HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC----CchhHHHHHHHhhcCCCh
Q 002876 75 KFELVQRWLSLDSSVKA-----QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK----QWPELIGALLSNIHQLPP 145 (872)
Q Consensus 75 ~~~~~~~~~~l~~~~~~-----~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~----~~~~l~~~l~~~l~~~~~ 145 (872)
+++.+. ...+.|+++|.+++..+|..++.+|+.++... +.. .-...++.|...+.+++.
T Consensus 132 -----------~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~-~~~r~~v~~~G~i~~Ll~lL~~~~~ 199 (510)
T 3ul1_B 132 -----------TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDL 199 (510)
T ss_dssp -----------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTCSSCG
T ss_pred -----------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHHHHhccc
Confidence 222222 34567899999999999999999999998532 100 012456778888876543
Q ss_pred -----hHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHH
Q 002876 146 -----HTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYI 220 (872)
Q Consensus 146 -----~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (872)
.....+..++..++....+. ........++|.+...+. +.+.+++..|+.++..+......... ......+
T Consensus 200 ~~~~~~~~~~a~~~L~nl~~~~~~~-~~~~~~~~~lp~L~~LL~--~~~~~v~~~A~~aL~~L~~~~~~~~~-~i~~~g~ 275 (510)
T 3ul1_B 200 STLACGYLRNLTWTLSNLCRNKNPA-PPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIE-MVVKKGV 275 (510)
T ss_dssp GGSCHHHHHHHHHHHHHHHCCCSSC-CCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHH-HHHTTTC
T ss_pred hhhhHHHHHHHHHHHHHHhhcccch-hHHHHHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHhhchhhhHH-HHHhccc
Confidence 34556777777777654221 112456778899999888 78999999999999987643221100 0001235
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcC
Q 002876 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (872)
Q Consensus 221 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (872)
++.+..++.++++.++..++.++..++..........+. ..++.+...+.+.+++++..|+.++..++....
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~------- 348 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ------- 348 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH-------
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH-------
Confidence 677888888999999999999999987654433222222 345556666778888999999988888874211
Q ss_pred CCCCCCCCCchHhHHHhhh-hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcch-----hchHHHHH
Q 002876 300 GDFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVMPFVE 373 (872)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-----~~l~~~l~ 373 (872)
....... ..++|.++..+.. .++.+++.|..+|..++........ ...++.+.
T Consensus 349 ------------~~~~~v~~~g~i~~Lv~lL~~---------~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~ 407 (510)
T 3ul1_B 349 ------------DQIQQVVNHGLVPFLVGVLSK---------ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407 (510)
T ss_dssp ------------HHHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred ------------HHHHHHHhcCCHHHHHHHHcC---------CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 1111111 2467777777753 1247788888888887764321111 23456677
Q ss_pred hhhcCcchhhhHHHHHHHHHhhCCCCC----CcchHHHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 002876 374 ENITKQEWRQREAATYAFGSILEGPSP----EKLVPLVN--IALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (872)
Q Consensus 374 ~~~~~~~~~~r~aal~~l~~l~~~~~~----~~~~~~~~--~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (872)
+.+.+++++++..++.+|..+...... ..+...+. ..+..+.... .+++..|+..|...+.++..
T Consensus 408 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 408 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCC
Confidence 778888899999999988887643210 11111121 2345555555 88999999999999887765
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.40 E-value=1.5e-10 Score=127.61 Aligned_cols=391 Identities=14% Similarity=0.117 Sum_probs=258.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--Ch-------hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhh
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQ--NL-------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHR 74 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~--~~-------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~ 74 (872)
.+..+++.+.|+|.+.+-+|.+.+.++-.. +| .|.++.|.+.+.. +.++.++..|+..|.|.........
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 467889999999999999999999776433 33 2577888888875 4578999999999999764221100
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC---CchhHHHHHHHhhcCCCh-----h
Q 002876 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPP-----H 146 (872)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~---~~~~l~~~l~~~l~~~~~-----~ 146 (872)
..-......+.|+.+|.+++..++..++.+|+.++....... .-...++.|+..+.+++. .
T Consensus 156 -----------~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~ 224 (529)
T 3tpo_A 156 -----------KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 224 (529)
T ss_dssp -----------HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH
T ss_pred -----------HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH
Confidence 001112356778899999999999999999999986420000 012356777888876543 3
Q ss_pred HHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHH
Q 002876 147 TKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCE 226 (872)
Q Consensus 147 ~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~ 226 (872)
....+..++..++....+. ........++|.+...+. +++++++..|+.++..+......... ......+++.+..
T Consensus 225 ~~~~a~~~L~nl~~~~~~~-~~~~~~~~~lp~L~~LL~--~~~~~v~~~a~~aL~~l~~~~~~~~~-~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPA-PPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVVPQLVK 300 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTC-CCHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHH-HHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccch-hhHHHHhhHHHHHHHHhc--CCcHHHHHHHHHHHHHhhhhhhhhHH-HHHhccchHHHHH
Confidence 4556777777777654221 112456778899999888 78999999999999987653221110 0001235677888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 002876 227 ATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGD 305 (872)
Q Consensus 227 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (872)
++.++++.++..++.++..++...+......+. ..++.+...+.+.+++++..|+.++..++....
T Consensus 301 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~------------- 367 (529)
T 3tpo_A 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ------------- 367 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH-------------
T ss_pred HhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH-------------
Confidence 888999999999999999998654433222222 456677777888899999999988888875211
Q ss_pred CCCchHhHHHhhh-hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcc----h-hchHHHHHhhhcCc
Q 002876 306 SDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDI----V-PLVMPFVEENITKQ 379 (872)
Q Consensus 306 ~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~----~-~~l~~~l~~~~~~~ 379 (872)
....... ..++|.++..+.. ..+.++..|..+|..++....... + ...++.+.+.+.++
T Consensus 368 ------~~~~~v~~~g~i~~Lv~lL~~---------~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~ 432 (529)
T 3tpo_A 368 ------DQIQQVVNHGLVPFLVGVLSK---------ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432 (529)
T ss_dssp ------HHHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred ------HHHHHHHhcCcHHHHHHHhcC---------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC
Confidence 1111111 2467777777653 124678888888888775432111 1 12456677788888
Q ss_pred chhhhHHHHHHHHHhhCCCCCCcchHHHHH------HHHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 002876 380 EWRQREAATYAFGSILEGPSPEKLVPLVNI------ALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (872)
Q Consensus 380 ~~~~r~aal~~l~~l~~~~~~~~~~~~~~~------i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (872)
++.++..++.+|..+........-.+.+.. .+..+.... .+++..|+..|...+.++..
T Consensus 433 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 433 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG-GCSSHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCC
Confidence 899999999888887643210011111111 234454555 88999999999999887765
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=4e-12 Score=124.36 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=164.2
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHH
Q 002876 611 GLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCD 690 (872)
Q Consensus 611 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 690 (872)
+.+.+.+++.++..|..++..+..++...+......+..+++.+.+.+..+.+..++..++.+++.++..++..+.+|++
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34667788899999999999999999875443334457888999888852346699999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHH
Q 002876 691 GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEA 770 (872)
Q Consensus 691 ~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~ 770 (872)
.+++.++..+.++ +..+|..+..++..++...+ ++.++|.+...++++ + ..+|..++..
T Consensus 98 ~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~------~-------~~vr~~~l~~ 156 (242)
T 2qk2_A 98 ACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS------LEAQQESIVESLSNK------N-------PSVKSETALF 156 (242)
T ss_dssp HHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCS------C-------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCC------C-------hHHHHHHHHH
Confidence 9999999999988 67899999999999887543 467788888887654 1 4788999999
Q ss_pred HHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-ccccccC
Q 002876 771 FSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSN-AGPLIQQ 836 (872)
Q Consensus 771 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~-~~~~~~~ 836 (872)
+..++..... ...+.+|++.+++.+...+.| .++++|..|..+++.++..+|++ +.++++.
T Consensus 157 l~~~l~~~~~---~~~~~~~l~~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 157 IARALTRTQP---TALNKKLLKLLTTSLVKTLNE--PDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp HHHHHTTCCG---GGCCHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred HHHHHHHcCC---CCccHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 8887765321 124568999999999999986 68999999999999999999976 7777765
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.4e-11 Score=117.87 Aligned_cols=203 Identities=9% Similarity=0.093 Sum_probs=157.5
Q ss_pred HHHHhccCCcHHHHHHHHHHHHH-hhhhccCCCCCCcccC--ccchHHHHHHHHHhc-cC-ChhHHHHHHHHHHHHHHhc
Q 002876 414 MLTALMQDPNNHVKDTTAWTLGR-MFEFLHGSTLETPIIN--QGNCQQIISVLLQSM-KD-VPNVAEKACGALYFLAQGF 488 (872)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~-l~~~~~~~~~~~~~~~--~~~~~~il~~l~~~l-~d-~~~v~~~a~~al~~l~~~~ 488 (872)
+...+ .+.+|.-|.+|+..++. +++..+ ... ...+..++..+.+.+ +| +..|+..|+.+++.++..+
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~-------~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTK-------KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCC-------CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCC-------ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 45567 89999999999999999 886543 122 334457799999999 56 7899999999999999887
Q ss_pred ccCCCCCCCCc-hhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002876 489 EDAISPSSPLT-PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLS 567 (872)
Q Consensus 489 ~~~~~~~~~l~-~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 567 (872)
. ...+. +|...+++.++..+.+.. +.++..+..++.
T Consensus 93 ~-----~~~f~~~y~~~llp~ll~~l~dkk---~~V~~aa~~al~----------------------------------- 129 (249)
T 2qk1_A 93 K-----TPGFSKDYVSLVFTPLLDRTKEKK---PSVIEAIRKALL----------------------------------- 129 (249)
T ss_dssp C-----TTTSCHHHHHHHHHHHHHGGGCCC---HHHHHHHHHHHH-----------------------------------
T ss_pred c-----cccccHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHH-----------------------------------
Confidence 2 15688 999999999999997653 445544444433
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh---hhhH
Q 002876 568 SDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG---QDFL 644 (872)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~ 644 (872)
.++...++.. ..++.+.+++.++..+++.++.+|+.++.++++++...+ ..+.
T Consensus 130 -------------------~i~~~~~~~~-----~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 130 -------------------TICKYYDPLA-----SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp -------------------HHHHHSCTTC-----TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred -------------------HHHHHccccc-----cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 3333332210 112477788888888988889999999999999999988 5688
Q ss_pred hhh-HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhcc-ccccHHHH
Q 002876 645 KYM-PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDK-ILPYCDGI 692 (872)
Q Consensus 645 ~~~-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~i 692 (872)
+|+ +.++|.+.+.+.+. +.++|..|..+++.+++.+|+. +.||++.+
T Consensus 186 ~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999 99999999999865 5699999999999999999964 77777653
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.28 E-value=6.5e-10 Score=111.69 Aligned_cols=252 Identities=19% Similarity=0.178 Sum_probs=174.7
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhH
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 255 (872)
++.++..+. ++++.+|..|+.+|+.+-. +..++.+...+.++++.+|..+..+|..+... .
T Consensus 25 i~~L~~~L~--~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-----~ 85 (280)
T 1oyz_A 25 DDELFRLLD--DHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----K 85 (280)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-----T
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----c
Confidence 456666777 7899999999999997421 34667777888899999999999999875421 1
Q ss_pred hhHHHHHHHHHH-HHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccC
Q 002876 256 PYIQDIFNITAK-AVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEE 334 (872)
Q Consensus 256 ~~~~~l~~~~~~-~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 334 (872)
..++.+++.+.. ...++++.+|..++..+..+.... ....+.+++.+...+..
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-----------------------~~~~~~~~~~L~~~l~d--- 139 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN-----------------------PIYSPKIVEQSQITAFD--- 139 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-----------------------GGGHHHHHHHHHHHTTC---
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----------------------CcccHHHHHHHHHHhhC---
Confidence 224455665553 457888899999999888876421 11123455666665532
Q ss_pred CcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 002876 335 DQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414 (872)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l 414 (872)
.++.+|..|..+|+.+.. +..++.+.+.+.++++.+|..++.+++.+.... +.+++.+
T Consensus 140 ------~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L 197 (280)
T 1oyz_A 140 ------KSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCF 197 (280)
T ss_dssp ------SCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHH
Confidence 225889888888776543 335666777778899999999999999884321 4567788
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHHHHHHHHhcccCCCC
Q 002876 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISP 494 (872)
Q Consensus 415 ~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~ 494 (872)
...+ +|+++.||..++++++.+... ..++.++..+.+ +.||..+..+|+.+.
T Consensus 198 ~~~l-~d~~~~vR~~A~~aL~~~~~~-----------------~~~~~L~~~l~d-~~vr~~a~~aL~~i~--------- 249 (280)
T 1oyz_A 198 VEML-QDKNEEVRIEAIIGLSYRKDK-----------------RVLSVLCDELKK-NTVYDDIIEAAGELG--------- 249 (280)
T ss_dssp HHHT-TCSCHHHHHHHHHHHHHTTCG-----------------GGHHHHHHHHTS-SSCCHHHHHHHHHHC---------
T ss_pred HHHh-cCCCHHHHHHHHHHHHHhCCH-----------------hhHHHHHHHhcC-ccHHHHHHHHHHhcC---------
Confidence 8899 999999999999999987631 355666777765 348888999998872
Q ss_pred CCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHH
Q 002876 495 SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (872)
Q Consensus 495 ~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l 531 (872)
. +..++.|...+.+.+ ++.++..+++.+
T Consensus 250 -~------~~~~~~L~~~l~~~~--~~~~~~~~~~~l 277 (280)
T 1oyz_A 250 -D------KTLLPVLDTMLYKFD--DNEIITSAIDKL 277 (280)
T ss_dssp -C------GGGHHHHHHHHTTSS--CCHHHHHHHHHH
T ss_pred -c------hhhhHHHHHHHhcCC--CcHHHHHHHHHh
Confidence 1 134556666665544 445555555544
No 57
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.20 E-value=1.8e-07 Score=112.81 Aligned_cols=596 Identities=11% Similarity=0.075 Sum_probs=304.6
Q ss_pred ChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHH
Q 002876 144 PPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRV 223 (872)
Q Consensus 144 ~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~ 223 (872)
+...|..|-..|..+-+. |+. +..+...+. +.+.+..+|..|+..+.+.+...-..+. ...+..|-+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~--p~~-----~~~~~~~L~----~~s~~~~vR~~A~~~Lk~~I~~~W~~l~-~e~k~~Ir~~ 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK--CPI-----CVPCGLRLA----EKTQVAIVRHFGLQILEHVVKFRWNGMS-RLEKVYLKNS 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTT-----HHHHHHHHT----STTSCHHHHHHHHHHHHHHHHHSGGGSC-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC--chH-----HHHHHHHHH----ccCCCHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHH
Confidence 456788888888766332 222 222222222 1256889999999999987753222222 2333444444
Q ss_pred HHHhhc-------CCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 002876 224 VCEATL-------SPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (872)
Q Consensus 224 l~~~~~-------~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (872)
+...+. +....+|..+..++..++..... ..++.+++.+...+.. ++..+..++.++..+++.....
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~-- 167 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF-- 167 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc--
Confidence 433321 14688999999999999987532 2345566666655554 4455677888888887643210
Q ss_pred hcCCCCCCCCCCch---HhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHH
Q 002876 297 EYGGDFSGDSDIPC---FYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVE 373 (872)
Q Consensus 297 ~~~~~~~~~~~~~~---~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 373 (872)
. .....+. ...+...++.+++.+...+.. . .... ...+... .. +.
T Consensus 168 --~----~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~------------~--------~~~~-~~~~~~~-~~----~~ 215 (1204)
T 3a6p_A 168 --Q----TLPPQRRRDIQQTLTQNMERIFSFLLNTLQE------------N--------VNKY-QQVKTDT-SQ----ES 215 (1204)
T ss_dssp --C----CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHH------------H--------HHHH-HHHTTCS-TT----HH
T ss_pred --c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H--------HHHH-hcccccc-cc----hh
Confidence 0 0000000 001112222333333322210 0 0000 0000000 00 00
Q ss_pred hhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCc
Q 002876 374 ENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (872)
Q Consensus 374 ~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
. ..++...+..++.++.....-.....+...-..+++.+...+ . ++.+|.+|+.|+..+......+.. .....
T Consensus 216 ~--~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l-~--~~~lr~~A~ecL~~i~s~~~~~~~-~~~li- 288 (1204)
T 3a6p_A 216 K--AQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLL-N--EQELQLGAAECLLIAVSRKGKLED-RKPLM- 288 (1204)
T ss_dssp H--HHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGG-G--CTTTHHHHHHHHHHHHTCCSCHHH-HGGGG-
T ss_pred h--hhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHc-C--CHHHHHHHHHHHHHHHhCCCChhh-HHHHH-
Confidence 0 011234555666666655443310001010023677777777 4 467999999999999985421000 00000
Q ss_pred cch-HHHHHHHHHhc--------cC-ChhHHHHHHHHHHHHHHhcccC--CCCCCCCchhHHHHHHHHHHhhccCCchhh
Q 002876 454 GNC-QQIISVLLQSM--------KD-VPNVAEKACGALYFLAQGFEDA--ISPSSPLTPFFQEIVQALLTVTHREDAGES 521 (872)
Q Consensus 454 ~~~-~~il~~l~~~l--------~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~ 521 (872)
..+ ...+..++... .+ +..+....+..+..+...+... ........+.+..+++.++..+.++ +.
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~---~~ 365 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP---SQ 365 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS---CH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc---cH
Confidence 111 11122233322 21 2445555555665555332110 0001235668889999999999876 34
Q ss_pred hhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHh-----h------------hcCChhH-HHHHHHHHHHHHH
Q 002876 522 RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLE-----A------------QKLSSDE-REKQNEIQGLLCG 583 (872)
Q Consensus 522 ~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~-----~------------~~~~~~~-~~~~~~~~~~~~~ 583 (872)
.+...++..+..+.+.......+.+..+++.+++.+...+. . ...++++ .+.+.++|.....
T Consensus 366 ~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d 445 (1204)
T 3a6p_A 366 FLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGE 445 (1204)
T ss_dssp HHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHH
Confidence 56667777777777664311122334444444444422111 0 0111112 2345567777777
Q ss_pred HHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc----c---------------------ccchhhHHHHHHHHHHHH
Q 002876 584 CLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI----R---------------------SATAHEEAMLAIGALAYA 638 (872)
Q Consensus 584 ~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~----~---------------------~~~~~~~a~~~l~~l~~~ 638 (872)
++..++...+.. ..+ .+.+.+...+.. . .....+..+.++..++..
T Consensus 446 ~l~~i~~v~p~~------~l~---~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~ 516 (1204)
T 3a6p_A 446 VMRLACRLDPKT------SFQ---MAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQ 516 (1204)
T ss_dssp HHHHHHHHCHHH------HHH---HHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHH------HHH---HHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH
Confidence 777776554322 112 222222222221 0 111234455566666655
Q ss_pred hhhhh-HhhhH-HHHHHHHhhh-c-CCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCC---------
Q 002876 639 TGQDF-LKYMP-EFYKYVEMGL-Q-NFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQL--------- 705 (872)
Q Consensus 639 ~~~~~-~~~~~-~i~~~l~~~l-~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--------- 705 (872)
+.... .++++ .++|.++..+ + +.+++.++...+.+++.+...+.. -..|++.+++.++..+.+...
T Consensus 517 ~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~ 595 (1204)
T 3a6p_A 517 MFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTR 595 (1204)
T ss_dssp HHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCH
T ss_pred HhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccH
Confidence 52211 13333 2445455443 2 245678999999999998887653 235889999999988765210
Q ss_pred -CCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 002876 706 -HRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKT 784 (872)
Q Consensus 706 -~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 784 (872)
..+++..+..++.+++..+++.+.||++++...+...++..... +. .+. ....+++..+...++ ..
T Consensus 596 ~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l---~~--~e~-----~~L~eal~~ia~~~~---~~ 662 (1204)
T 3a6p_A 596 AVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLL---TQ--MEK-----CALMEALVLISNQFK---NY 662 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTS---CH--HHH-----HHHHHHHHHHHGGGC---CH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccc---cH--HHH-----HHHHHHHHHHhccCC---CH
Confidence 22577889999999999999999999999999998888643100 11 121 123333333322211 12
Q ss_pred cccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 002876 785 QLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLG 827 (872)
Q Consensus 785 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g 827 (872)
+....|+..+++.+...+.+ ++++. ++......+..+|
T Consensus 663 ~~~~~~l~~ll~P~~~~w~~----~~~~~-~~s~~~~f~~~~G 700 (1204)
T 3a6p_A 663 ERQKVFLEELMAPVASIWLS----QDMHR-VLSDVDAFIAYVG 700 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHSC----HHHHH-HHHCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcc----HHHHH-hhcCHHHHHHHhC
Confidence 34456788888888877763 34444 3444444445444
No 58
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.15 E-value=6.4e-07 Score=98.11 Aligned_cols=581 Identities=13% Similarity=0.121 Sum_probs=306.4
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhh
Q 002876 131 ELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (872)
Q Consensus 131 ~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (872)
.++..|...++.........-|.++-.+...+ .-.+ +.+.-++..+... ....++|..++-++..+....++.
T Consensus 132 ~ll~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~--~~~~~l~~~~~~~----~~~~~~~~~~l~i~~~~~~~~~~~ 204 (778)
T 3opb_A 132 ALLNELQIRIHYGEDTHVTYLLSIILQLLNKF-KYNF--KEVRFLVKELILR----ISEDEVKSMMLIIFAELQSSFQKD 204 (778)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS-CCCS--TTTTHHHHHHHTT----TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHHHHc-Cccc--cchhhHHHHhccc----cChhhhHHHHHHHHHHHHHhCchH
Confidence 34445544454222223344555555565554 1112 2244444444432 458899999999998877655543
Q ss_pred ccChhhHHHHHH-HHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH--HHHHHHHHHHHh-cCChhhHHHHHHHHHH
Q 002876 211 FSNDMERDYIMR-VVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI--QDIFNITAKAVR-EDEEPVALQAIEFWSS 286 (872)
Q Consensus 211 ~~~~~~~~~il~-~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~--~~l~~~~~~~~~-~~~~~v~~~a~~~~~~ 286 (872)
+.. ....++. .+.+.-.+...+-...++..+..+.-..|+.-...+ +.+.+.+...+. ..++.+...+++.+..
T Consensus 205 ~~~--~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsa 282 (778)
T 3opb_A 205 FDK--AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSS 282 (778)
T ss_dssp HHH--HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 321 1122333 222221222222344555555554444443322211 234555555553 3455677788888887
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc--CCcc
Q 002876 287 VCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDDI 364 (872)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~ 364 (872)
.|..+ .|..++..+ .++.|.+.+.. + .+|..|.-+|..+.... .+..
T Consensus 283 ACi~~-----------------~cR~~I~~~---~~~~L~~~l~~--------~---~ir~lAavvL~KL~~~~~~~~~s 331 (778)
T 3opb_A 283 ACIDE-----------------TMRTYITEN---YLQLLERSLNV--------E---DVQIYSALVLVKTWSFTKLTCIN 331 (778)
T ss_dssp HCCSH-----------------HHHHHHHHH---HHHHHHHHTTS--------G---GGHHHHHHHHHHHTGGGTCTTCC
T ss_pred HhCCc-----------------HHHHHHHHh---HHHHHHHHhcc--------H---HHHHHHHHHHHHHhcCCCCCcCc
Confidence 77533 144444332 33444444421 1 45666777777666543 2233
Q ss_pred hhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH---HHHHHHHHHHhccC-CcHHHHHHHHHHHHHhhhh
Q 002876 365 VPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV---NIALNFMLTALMQD-PNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 365 ~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~---~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~l~~~ 440 (872)
+..+.+.+.+.+.+++-..|+-|+..|+.+.-.. ...+.+ ..+++.++..+ .+ .+..+.+.++.++.++...
T Consensus 332 i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~---~VKe~L~~d~~~L~~Lv~ll-k~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 332 LKQLSEIFINAISRRIVPKVEMSVEALAYLSLKA---SVKIMIRSNESFTEILLTMI-KSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS---HHHHHHHHCHHHHHHHHHHH-TTTCCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH---HHHHHHHhCHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcCC
Confidence 4557777878877755555888888888886543 223333 55678888888 64 6677899999999999997
Q ss_pred ccCCCCCCcccCccchHHHHHHHHHh---ccCChhHHHHHHHHHHHH-HHhcccCCCCCCCCchhHHHHHHHHHHhhccC
Q 002876 441 LHGSTLETPIINQGNCQQIISVLLQS---MKDVPNVAEKACGALYFL-AQGFEDAISPSSPLTPFFQEIVQALLTVTHRE 516 (872)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~---l~d~~~v~~~a~~al~~l-~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~ 516 (872)
.+... ....-+..+.+..-.. -+.+........ -+..+ +..+-+ ..+++.|...+...
T Consensus 408 ~~~~~-----~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~-~v~~~~~~~l~e------------aGvIp~Lv~Ll~S~ 469 (778)
T 3opb_A 408 PEEXX-----XXXXXXXXXXXXXXXXXPAADKVGAEKAAKE-DILLFNEKYILR------------TELISFLKREMHNL 469 (778)
T ss_dssp CCCCC-----CCCC------------------CCTHHHHHH-HHHHHHHHHTTT------------TTHHHHHHHHGGGS
T ss_pred Ccccc-----hhhhhhhhhhhhccccCcccCcccccccchH-HHHHHHHHHHHH------------CcCHHHHHHHHcCC
Confidence 54210 0011111221111111 000001001111 11111 111110 13566667777664
Q ss_pred CchhhhhHHHHHHHHHHHHHccccCcHHHH-HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 002876 517 DAGESRLRTAAYETLNEVVRCSTDETAPMV-MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (872)
Q Consensus 517 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 595 (872)
++.+|..+.+++..+......+ .... ...++.++..+.... +.. ...+..+..+|..+.-...+.
T Consensus 470 ---s~~~re~A~~aL~nLS~d~~~R-~~lvqqGal~~LL~lL~s~~--------~~~--~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 470 ---SPNCKQQVVRIIYNITRSKNFI-PQLAQQGAVKIILEYLANKQ--------DIG--EPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp ---CHHHHHHHHHHHHHHHTSGGGH-HHHHHTTHHHHHHHHTTCC-----------C--CHHHHHHHHHHHHHHHTSCHH
T ss_pred ---CHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHhcCC--------Ccc--hHHHHHHHHHHHHHHhcCCHH
Confidence 5778999999999997553222 2222 345677776664321 100 013445677777765332211
Q ss_pred cchhhHhhHh-HHHHHHHHHHHHhc-cccc-------------hhhHHHHHHHHHHHHh---hhhhH-hhhH--HHHHHH
Q 002876 596 EQTKYVFMQY-ADQMMGLFLRVFAI-RSAT-------------AHEEAMLAIGALAYAT---GQDFL-KYMP--EFYKYV 654 (872)
Q Consensus 596 ~~~~~~~~~~-~~~i~~~l~~~l~~-~~~~-------------~~~~a~~~l~~l~~~~---~~~~~-~~~~--~i~~~l 654 (872)
-.|..+ ....++.++++|.. +... .+-.|+.+|++++..- |+... ..+. ..+|.+
T Consensus 536 ----~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 536 ----LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp ----HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred ----HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 111111 01456667777762 2111 1457899999998754 22332 2333 489999
Q ss_pred HhhhcCCChhhHHHHHHHHHHHHHHHHhc---cccccH-HH---HHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc
Q 002876 655 EMGLQNFEDYQVCAITVGVVGDLCRALED---KILPYC-DG---IMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 655 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~-~~---i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
...+.+. +..+|..|+++++.++..-.. .+...- +. =++.|+.++..+ +.++|..+.++++.++...+..
T Consensus 612 ~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~i 688 (778)
T 3opb_A 612 ENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLI 688 (778)
T ss_dssp HHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHH
Confidence 9988754 558999999999999964321 222111 22 378899999776 7889999999999987544432
Q ss_pred hHHhH--HHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccch--HHHHHHHHHHhc
Q 002876 728 FEKYL--MYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYA--PHILQFLDSLYM 803 (872)
Q Consensus 728 ~~~~l--~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~ 803 (872)
....+ +..++.+...++... ++ ..+|..++.++..++.-.......+.+..+. ..+...+..+++
T Consensus 689 a~~ll~~~~gi~~Ll~lL~~~~----~~-------~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk 757 (778)
T 3opb_A 689 AKELLTKKELIENAIQVFADQI----DD-------IELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLK 757 (778)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT----TC-------HHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHS
T ss_pred HHHHHHccccHHHHHHHHhccC----CC-------HHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHh
Confidence 22222 235556666666531 02 2566677777777775222221223333333 345566666666
Q ss_pred CC
Q 002876 804 EK 805 (872)
Q Consensus 804 ~~ 805 (872)
.+
T Consensus 758 ~~ 759 (778)
T 3opb_A 758 RG 759 (778)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.13 E-value=5.5e-07 Score=98.60 Aligned_cols=543 Identities=8% Similarity=0.057 Sum_probs=294.6
Q ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhh--cCCChhHHHHHHHHHHHhhhhccccccch
Q 002876 93 IKSFILKTLS-SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNI--HQLPPHTKQATLETLGYICEEVSSDAVEQ 169 (872)
Q Consensus 93 i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l--~~~~~~~r~~al~~l~~i~~~~~~~~l~~ 169 (872)
+.+.|-..+. ..+..+.--+...++.+.+.. ..|++ +..++.-+ +...+.+|..++.++..+.+.. ++.+ .
T Consensus 133 ll~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~-~ 206 (778)
T 3opb_A 133 LLNELQIRIHYGEDTHVTYLLSIILQLLNKFK---YNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDF-D 206 (778)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---CCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHH-H
T ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHcC---ccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHH-H
Confidence 3334433333 345566666666666555543 47877 67666655 3456789999999998887766 4444 3
Q ss_pred hhHHHHHHHHH-hcccCCCCCHHHHHHHHHHHHHhHhhch----hhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002876 170 DHVNKILTAVV-QGMNASESNNDVRLAATRALYNALGFAQ----ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (872)
Q Consensus 170 ~~~~~i~~~l~-~~l~~~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~ 244 (872)
..+..++..++ ..=. +...+-...++.++..++...+ ..|..+...+.+.+.+. +..+..+..++++.|.
T Consensus 207 ~~~~~~~~~l~~e~~~--~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~---~~~~~~~~~a~L~lLs 281 (778)
T 3opb_A 207 KAVVDFMSSLIVEAEI--DVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVF---EEQDLQFTKELLRLLS 281 (778)
T ss_dssp HHHHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHH---SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc--CCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHh---cccchHHHHHHHHHHH
Confidence 44444444332 1111 1112223445555555544433 23333332233333321 3456777788888888
Q ss_pred HHHHH--hHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHH
Q 002876 245 AISST--YYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLV 322 (872)
Q Consensus 245 ~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 322 (872)
..+.. +.+++. ...++.+...+.+ +.++..|+-.+..+..... .-...+..+.
T Consensus 282 aACi~~~cR~~I~---~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~--------------------~~~~si~~La 336 (778)
T 3opb_A 282 SACIDETMRTYIT---ENYLQLLERSLNV--EDVQIYSALVLVKTWSFTK--------------------LTCINLKQLS 336 (778)
T ss_dssp HHCCSHHHHHHHH---HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGT--------------------CTTCCHHHHH
T ss_pred HHhCCcHHHHHHH---HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCC--------------------CCcCcHHHHH
Confidence 76643 223332 2334444455543 5677777766666553210 0011233466
Q ss_pred HHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc--CCcch--hchHHHHHhhhcC-cchhhhHHHHHHHHHhhCC
Q 002876 323 PLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV--GDDIV--PLVMPFVEENITK-QEWRQREAATYAFGSILEG 397 (872)
Q Consensus 323 ~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~~--~~l~~~l~~~~~~-~~~~~r~aal~~l~~l~~~ 397 (872)
+.+...+.+.+. ..+..|.+.|..++... .+.+. +..+..+.+.+.+ .+....++++..+.-++..
T Consensus 337 ~~~~~~L~~~~~---------~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 337 EIFINAISRRIV---------PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp HHHHHHTTTCCH---------HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCc---------cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 667776654211 11555566666554311 00000 1222333333332 3345566667677666653
Q ss_pred CCCC-------------------------c-------chH----HH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 002876 398 PSPE-------------------------K-------LVP----LV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFE 439 (872)
Q Consensus 398 ~~~~-------------------------~-------~~~----~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~ 439 (872)
.... . ... .+ ..++|.+...+ .++++.+|..+++++++++.
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITR 486 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHT
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcC
Confidence 3110 0 000 01 23778888888 88999999999999999987
Q ss_pred hccCCCCCCcccCcc-chHHHHHHHHHhccCC-h---hHHHHHHHHHHHHHHhcccCC-CCCCCCchhHHHHHHHHHHhh
Q 002876 440 FLHGSTLETPIINQG-NCQQIISVLLQSMKDV-P---NVAEKACGALYFLAQGFEDAI-SPSSPLTPFFQEIVQALLTVT 513 (872)
Q Consensus 440 ~~~~~~~~~~~~~~~-~~~~il~~l~~~l~d~-~---~v~~~a~~al~~l~~~~~~~~-~~~~~l~~~l~~i~~~l~~~l 513 (872)
.-. .... .-+..++.|+..+.+. . .++..|+.+|.++.....+.. .++.. + ...++.|+..+
T Consensus 487 d~~--------~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~--~--~~aI~pLv~LL 554 (778)
T 3opb_A 487 SKN--------FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYS--A--LNAIPFLFELL 554 (778)
T ss_dssp SGG--------GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSC--S--TTHHHHHHHTS
T ss_pred CHH--------HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCc--c--ccchHHHHHHc
Confidence 532 1111 2235677888887753 2 379999999999986532110 01111 1 15677777777
Q ss_pred cc-CCchh---------h-hhHHHHHHHHHHHHHccc---cCc-HHHHH--HHHHHHHHHHHHHHhhhcCChhHHHHHHH
Q 002876 514 HR-EDAGE---------S-RLRTAAYETLNEVVRCST---DET-APMVM--QLVPLIMMELHQTLEAQKLSSDEREKQNE 576 (872)
Q Consensus 514 ~~-~~~~~---------~-~v~~~~~~~l~~l~~~~~---~~~-~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 576 (872)
.. +.... + .-+..++.+|..++...+ +.. ...+. ..+|.+.+.+. .+. . .
T Consensus 555 ~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~---------s~n-~---~ 621 (778)
T 3opb_A 555 PRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML---------DEN-V---P 621 (778)
T ss_dssp CCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG---------CSS-H---H
T ss_pred CCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh---------CCC-H---H
Confidence 62 21100 0 114578888888887652 121 22222 24455444432 111 1 4
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhHhh---HhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHH
Q 002876 577 IQGLLCGCLQVIIQKLGSSEQTKYVFM---QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFY 651 (872)
Q Consensus 577 ~~~~~~~~l~~l~~~l~~~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~ 651 (872)
++..+++++..++..-.. .....+. +-...-++.++.+++..+..+|..|..+++.+....+......+. ..+
T Consensus 622 VrrAA~elI~NL~~~~e~--i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi 699 (778)
T 3opb_A 622 LQRSTLELISNMMSHPLT--IAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELI 699 (778)
T ss_dssp HHHHHHHHHHHHHTSGGG--TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHH--HHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence 677899999988752110 0001111 111223777888888888999999999999987655443333332 366
Q ss_pred HHHHhhhcCC-ChhhHHHHHHHHHHHHHHHHh-----ccccccH--HHHHHHHHHHccCCCCCCC
Q 002876 652 KYVEMGLQNF-EDYQVCAITVGVVGDLCRALE-----DKILPYC--DGIMTQLLKDLSSNQLHRS 708 (872)
Q Consensus 652 ~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~-----~~~~~~~--~~i~~~l~~~l~~~~~~~~ 708 (872)
+.++..+++. ++.+++..++.++..++...+ +.+..+. ..+...+.+++++++.+.+
T Consensus 700 ~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e 764 (778)
T 3opb_A 700 ENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPE 764 (778)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHH
Confidence 6666666652 456899999999999986332 2233333 3567778888877754333
No 60
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.10 E-value=1.2e-08 Score=102.31 Aligned_cols=224 Identities=13% Similarity=0.100 Sum_probs=163.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccC
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (872)
+..++..+.++|..+|..|...|.++.. +..+..|...+.++ ++.+|..|+..|.+.-..
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~--------------- 84 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG---QDAVRLAIEFCSDK--NYIRRDIGAFILGQIKIC--------------- 84 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC---HHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC---chHHHHHHHHHcCC--CHHHHHHHHHHHHHhccc---------------
Confidence 5667777788999999999999998863 67888888888753 789999999988764321
Q ss_pred CChHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 002876 85 LDSSVKAQIKSFIL-KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (872)
Q Consensus 85 l~~~~~~~i~~~ll-~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 163 (872)
.+....+.+.+. .++.++++.+|..++.+++.+.... + ...+..++.+...+.++++.+|..++..++.+..
T Consensus 85 --~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 85 --KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN-P-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp --TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred --cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-C-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 111222333444 2467889999999999999998654 2 2356789999999999999999999999976532
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 002876 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (872)
Q Consensus 164 ~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l 243 (872)
+ ..++.+...+. |+++.||..|+.+++.+-. . ....++.+...+.++++.+|..++..|
T Consensus 158 ~---------~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~------~----~~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 K---------ATIPLLINLLK--DPNGDVRNWAAFAININKY------D----NSDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp ----------CCHHHHHHHHT--CSSHHHHHHHHHHHHHHTC------C----CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHc--CCCHHHHHHHHHHHHhhcc------C----cHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 13456666677 8899999999999987421 0 135677788888899999999999999
Q ss_pred HHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 002876 244 VAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (872)
Q Consensus 244 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (872)
..+.. +..++.+...+.++ +++..+.+.+..+.
T Consensus 217 ~~~~~----------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 217 SYRKD----------KRVLSVLCDELKKN--TVYDDIIEAAGELG 249 (280)
T ss_dssp HHTTC----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHC
T ss_pred HHhCC----------HhhHHHHHHHhcCc--cHHHHHHHHHHhcC
Confidence 87642 12344444555553 38888887776654
No 61
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.07 E-value=2.4e-06 Score=95.75 Aligned_cols=295 Identities=10% Similarity=0.050 Sum_probs=182.2
Q ss_pred hHHHHHhhhc---CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCC--------cHHHHHHHHHHHHH
Q 002876 368 VMPFVEENIT---KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP--------NNHVKDTTAWTLGR 436 (872)
Q Consensus 368 l~~~l~~~~~---~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~--------~~~vr~~a~~~l~~ 436 (872)
.+..+..++. +.+..+|.+|++++|-+..+.. . .++..+...+ .++ ++.+|..|+..||.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-~-------~~~~lL~~~L-~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-R-------DTTDYLKNII-VENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-H-------HHHHHHHHHH-HHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-H-------HHHHHHHHHH-cCccccccccccHHHHHHHHHHHHH
Confidence 4566666665 5667899999999999988763 1 2345555555 433 37899999999997
Q ss_pred hhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhcc
Q 002876 437 MFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR 515 (872)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~ 515 (872)
+.-... . +.+++.|.+.+.+ +..++..|+.+|+.+.-. ..-...+..+++.+. +
T Consensus 464 a~~GS~---------~----eev~e~L~~~L~dd~~~~~~~AalALGli~vG--------Tgn~~ai~~LL~~~~----e 518 (963)
T 4ady_A 464 AAMGSA---------N----IEVYEALKEVLYNDSATSGEAAALGMGLCMLG--------TGKPEAIHDMFTYSQ----E 518 (963)
T ss_dssp HSTTCC---------C----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT--------CCCHHHHHHHHHHHH----H
T ss_pred HhcCCC---------C----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc--------cCCHHHHHHHHHHHh----c
Confidence 654332 1 1566666666664 566677788888876432 111223444444433 2
Q ss_pred CCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 002876 516 EDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595 (872)
Q Consensus 516 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 595 (872)
.. +..+|..+..+|+.+.-..++.. +.+++.+.. ..++ .+|..+..+++. ...|..
T Consensus 519 ~~--~e~vrR~aalgLGll~~g~~e~~--------~~li~~L~~--------~~dp----~vRygaa~algl--AyaGTG 574 (963)
T 4ady_A 519 TQ--HGNITRGLAVGLALINYGRQELA--------DDLITKMLA--------SDES----LLRYGGAFTIAL--AYAGTG 574 (963)
T ss_dssp CS--CHHHHHHHHHHHHHHTTTCGGGG--------HHHHHHHHH--------CSCH----HHHHHHHHHHHH--HTTTSC
T ss_pred cC--cHHHHHHHHHHHHhhhCCChHHH--------HHHHHHHHh--------CCCH----HHHHHHHHHHHH--HhcCCC
Confidence 22 34677788888887754443332 333444432 1222 223223333322 222322
Q ss_pred cchhhHhhHhHHHHHHHHHHH-HhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002876 596 EQTKYVFMQYADQMMGLFLRV-FAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVV 674 (872)
Q Consensus 596 ~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l 674 (872)
....++.++.. ..+.+..+|..|..+||.+...-. ...|.++..+.+..++.+|..+..++
T Consensus 575 ----------n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalAL 636 (963)
T 4ady_A 575 ----------NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFAL 636 (963)
T ss_dssp ----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11233333333 345667799999989988753321 23455555555566789999999999
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhc
Q 002876 675 GDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 675 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~ 746 (872)
|.++...+ ...+++.|..+..++ +..||..|+.++|-+.....+...|.+..++..+.+...++
T Consensus 637 Gli~aGn~------~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk 700 (963)
T 4ady_A 637 GIACAGKG------LQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNK 700 (963)
T ss_dssp HHHTSSSC------CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCS
T ss_pred HHhccCCC------cHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcc
Confidence 98763322 256777777777777 78899999999999987776766677888888887777654
No 62
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.01 E-value=1.9e-08 Score=99.26 Aligned_cols=233 Identities=17% Similarity=0.146 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhH
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQYQEQNL--------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRK 75 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~--------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~ 75 (872)
.+..++..+.+++.++|..|...|..+...++ .+.+..|...+.+. +..+|..|+..|.+..........
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHH
Confidence 57778888888999999999999999876543 25788888888763 699999999999997753211000
Q ss_pred HHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC---CCchhHHHHHHHhhcCCChhHHHHHH
Q 002876 76 FELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH---KQWPELIGALLSNIHQLPPHTKQATL 152 (872)
Q Consensus 76 ~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~al 152 (872)
.-......+.++..+.++++.+|..++.+++.++...... -.-...++.+.+.+.++++.++..++
T Consensus 81 -----------~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~ 149 (252)
T 4hxt_A 81 -----------AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 149 (252)
T ss_dssp -----------HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred -----------HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 0011235667889999999999999999999998532110 01135789999999999999999999
Q ss_pred HHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCC
Q 002876 153 ETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE 232 (872)
Q Consensus 153 ~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (872)
.+++.++... ++....-.-...++.+...+. ++++.+|..|+.++.++....+.... .......++.+..++.+++
T Consensus 150 ~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 150 RALANIASGP-DEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIK-AIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHH-HHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHcCC-HHHHHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHCCCc
Confidence 9999998753 221101122457788888888 78899999999999997753221110 0011346788888899999
Q ss_pred HHHHHHHHHHHHHHHHHhHHh
Q 002876 233 VKIRQAAFECLVAISSTYYEK 253 (872)
Q Consensus 233 ~~~r~~~~~~l~~l~~~~~~~ 253 (872)
+++|..++.+|..+....+..
T Consensus 226 ~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 226 SEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999998865543
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.99 E-value=1.2e-08 Score=109.77 Aligned_cols=346 Identities=12% Similarity=0.111 Sum_probs=207.7
Q ss_pred HHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCC
Q 002876 369 MPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTL 446 (872)
Q Consensus 369 ~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (872)
+|.+...+.++++..+..|+.++..++... +.....+ ...+|.++..+ .++++.++..|+++|.+++...+.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~--~~~~~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~~~--- 77 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD--ESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTT--- 77 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC--SSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHH---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--hHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHH---
Confidence 344556666778899999999999988643 2222222 45789999999 999999999999999999975221
Q ss_pred CCcccCccc-hHHHHHHHHHhcc-C-ChhHHHHHHHHHHHHHHhcccCCCCCCCCch-hHHHHHHHHHHhhc--------
Q 002876 447 ETPIINQGN-CQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTP-FFQEIVQALLTVTH-------- 514 (872)
Q Consensus 447 ~~~~~~~~~-~~~il~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~-~l~~i~~~l~~~l~-------- 514 (872)
..... -...+|.+++.|. + ++.++..++|+|.+++.. + .... .....++.|+..+.
T Consensus 78 ----~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~-------~~~~~i~~g~i~~Lv~ll~~~~s~~~~ 145 (457)
T 1xm9_A 78 ----NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D-------ELKEELIADALPVLADRVIIPFSGWCD 145 (457)
T ss_dssp ----HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S-------STHHHHHHHHHHHHHHHTTHHHHTCC-
T ss_pred ----HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H-------HhHHHHHhccHHHHHHHHhcccccccc
Confidence 11111 1245788888887 4 689999999999999864 1 1222 22367777888773
Q ss_pred cCCc-----hhhhhHHHHHHHHHHHHHccccCcHHHHH--HHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHH
Q 002876 515 REDA-----GESRLRTAAYETLNEVVRCSTDETAPMVM--QLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQV 587 (872)
Q Consensus 515 ~~~~-----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 587 (872)
+... .+..+...+.++|..+... +........ ..++.++..+........ .+++ ....++.++..
T Consensus 146 ~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~--~~~~-----~~e~a~~~L~n 217 (457)
T 1xm9_A 146 GNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASR--CDDK-----SVENCMCVLHN 217 (457)
T ss_dssp --------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTC--TTCT-----THHHHHHHHHH
T ss_pred CccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccC--CchH-----HHHHHHHHHHh
Confidence 1100 1345666899999999875 332222221 577777777765322100 0111 01112222221
Q ss_pred HHH----------------------------HhCC-------------------CcchhhHhhHhHHHHHHHHHHHHhcc
Q 002876 588 IIQ----------------------------KLGS-------------------SEQTKYVFMQYADQMMGLFLRVFAIR 620 (872)
Q Consensus 588 l~~----------------------------~l~~-------------------~~~~~~~~~~~~~~i~~~l~~~l~~~ 620 (872)
+.. .++. .....+.+ .-...++.+..+|.+.
T Consensus 218 Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~l~~L~~lL~~~ 295 (457)
T 1xm9_A 218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL--YHSDAIRTYLNLMGKS 295 (457)
T ss_dssp HTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG--GSHHHHHHHHHHHHHC
T ss_pred cccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH--hCcchHHHHHHHHhhc
Confidence 110 0000 00000001 1234567777777765
Q ss_pred -ccchhhHHHHHHHHHHHHhhh---hh-Hhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhcccccc-HHHH
Q 002876 621 -SATAHEEAMLAIGALAYATGQ---DF-LKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPY-CDGI 692 (872)
Q Consensus 621 -~~~~~~~a~~~l~~l~~~~~~---~~-~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~i 692 (872)
+..+++.+..+|+.++..-+. .. ...+ ...+|.|.+.+.+. +.+++..|+++++.++.. ...... ....
T Consensus 296 ~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~--~~~~~~i~~~~ 372 (457)
T 1xm9_A 296 KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH--PLLHRVMGNQV 372 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS--GGGHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC--HHHHHHHHHhh
Confidence 567889999999999854332 12 1223 35789999999865 458999999999999763 222222 2467
Q ss_pred HHHHHHHccCCCCC----CCCchhHHHHHHHHHHHhccchHHhHH--HHHHHHHHHHhhc
Q 002876 693 MTQLLKDLSSNQLH----RSVKPPIFSCFGDIALAIGENFEKYLM--YAMPMLQSAAELS 746 (872)
Q Consensus 693 ~~~l~~~l~~~~~~----~~v~~~~~~~l~~i~~~~~~~~~~~l~--~il~~l~~~l~~~ 746 (872)
++.|++.|...+.. .++...++.+++.+....++ ....+. ..++.|...+...
T Consensus 373 i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~ 431 (457)
T 1xm9_A 373 FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSS 431 (457)
T ss_dssp HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCT
T ss_pred hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCC
Confidence 89999999876321 12444677777777643332 233222 4677777766543
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.98 E-value=1.9e-07 Score=100.42 Aligned_cols=352 Identities=14% Similarity=0.073 Sum_probs=208.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccc-hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhc
Q 002876 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE-QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF 211 (872)
Q Consensus 133 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~-~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (872)
++.++..+.++++..+..|+.++..++..- ++ .. .-.-...+|.+++.+. ++++.++..|+.+|.++....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~-~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~--- 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ES-AKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRST--- 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SS-HHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCH---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hH-HHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCH---
Confidence 577888888888999999999999987543 21 10 1122456788888888 6889999999999999764211
Q ss_pred cChhhHHH-----HHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhHHhhHh-hHHHHHHHHHHHHh--------c-----
Q 002876 212 SNDMERDY-----IMRVVCEATL-SPEVKIRQAAFECLVAISSTYYEKLAP-YIQDIFNITAKAVR--------E----- 271 (872)
Q Consensus 212 ~~~~~~~~-----il~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~~~~~~~--------~----- 271 (872)
..+.. .++.+..++. +++++++..+..+|..+... ++ ... .+...++.+...+. +
T Consensus 77 ---~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~ 151 (457)
T 1xm9_A 77 ---TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMS 151 (457)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC-------
T ss_pred ---HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchh
Confidence 12222 3677888887 77899999999999999875 22 222 22356666666662 1
Q ss_pred ---CChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHH
Q 002876 272 ---DEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMA 348 (872)
Q Consensus 272 ---~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~ 348 (872)
.+.++...|..++..++.. ++. ...+... +..+|.|+..+.....+.+.++ .....
T Consensus 152 ~e~~~~~v~~~a~~aL~nLs~~-~~~----------------~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~---~~~e~ 210 (457)
T 1xm9_A 152 REVVDPEVFFNATGCLRNLSSA-DAG----------------RQTMRNY-SGLIDSLMAYVQNCVAASRCDD---KSVEN 210 (457)
T ss_dssp --CCCHHHHHHHHHHHHHHTTS-HHH----------------HHHHTTS-TTHHHHHHHHHHHHHHHTCTTC---TTHHH
T ss_pred cccccHHHHHHHHHHHHHHccC-HHH----------------HHHHHHc-CCCHHHHHHHHHhhccccCCch---HHHHH
Confidence 2345666888888887753 110 0111100 1234444444432100000000 11111
Q ss_pred HHHHHHHHHH----------------------------HcC----------------------Cc---c-hhchHHHHHh
Q 002876 349 GGTCLGLVAR----------------------------TVG----------------------DD---I-VPLVMPFVEE 374 (872)
Q Consensus 349 a~~~l~~l~~----------------------------~~~----------------------~~---~-~~~l~~~l~~ 374 (872)
+..+|..++. .++ +. + -+..++.+..
T Consensus 211 a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 290 (457)
T 1xm9_A 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290 (457)
T ss_dssp HHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHH
T ss_pred HHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHH
Confidence 1111222110 000 00 0 1123333333
Q ss_pred hhc-CcchhhhHHHHHHHHHhhCCCCCC--cc-hHHH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCC
Q 002876 375 NIT-KQEWRQREAATYAFGSILEGPSPE--KL-VPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLET 448 (872)
Q Consensus 375 ~~~-~~~~~~r~aal~~l~~l~~~~~~~--~~-~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
.+. +.+...+++++.+++.++.+.... .. ...+ ...+|.+...+ .+++..++..|+|++++++....
T Consensus 291 lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls~~~~------ 363 (457)
T 1xm9_A 291 LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPL------ 363 (457)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGG------
T ss_pred HHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHhcCHH------
Confidence 443 345789999999999998765311 11 1122 35678999999 99999999999999999987432
Q ss_pred cccCccchHHHHHHHHHhccCC-------hhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHHHhhccCCch
Q 002876 449 PIINQGNCQQIISVLLQSMKDV-------PNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAG 519 (872)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d~-------~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~~~l~~~~~~ 519 (872)
.....-...++.|++.|... .++...+++++.+++..- ......+ ...++.+...+.+..
T Consensus 364 --~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~-------~~~~~~i~~~g~l~~L~~L~~~~~-- 432 (457)
T 1xm9_A 364 --LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-------PQLAKQYFSSSMLNNIINLCRSSA-- 432 (457)
T ss_dssp --GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-------THHHHHHCCHHHHHHHHHHHHCTT--
T ss_pred --HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC-------HHHHHHHHHcCCHHHHHHHHcCCC--
Confidence 22333456788888888742 357778889999987542 1111111 245667777766552
Q ss_pred hhhhHHHHHHHHHHHH
Q 002876 520 ESRLRTAAYETLNEVV 535 (872)
Q Consensus 520 ~~~v~~~~~~~l~~l~ 535 (872)
+.++++.+...|..+.
T Consensus 433 ~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 433 SPKAAEAARLLLSDMW 448 (457)
T ss_dssp CHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3567778888776554
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.93 E-value=8e-09 Score=101.92 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=159.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcC
Q 002876 221 MRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG 299 (872)
Q Consensus 221 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~ 299 (872)
++.+...+++++++++..++.+|..++....+.....+. ..++.++..+.+.+++++..|+.++..++....+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------ 87 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE------ 87 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH------
Confidence 455556677889999999999998877764443333333 6788888999998899999999999888752111
Q ss_pred CCCCCCCCCchHhHHHhhh-hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCc---c-hhchHHHHHh
Q 002876 300 GDFSGDSDIPCFYFIKHAL-PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDD---I-VPLVMPFVEE 374 (872)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~ 374 (872)
...... ...+|.++..+.. ....++..|..+|..++...... + -...++.+.+
T Consensus 88 -------------~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 145 (252)
T 4db8_A 88 -------------QIQAVIDAGALPALVQLLSS---------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145 (252)
T ss_dssp -------------HHHHHHHTTHHHHHHHGGGC---------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -------------HHHHHHHcCCHHHHHHHHcC---------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHH
Confidence 111111 1356777776653 11477888888888776532211 1 1236677778
Q ss_pred hhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCc
Q 002876 375 NITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQ 453 (872)
Q Consensus 375 ~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
.+.++++.+|..++.+++.++.... ....... ..+++.+...+ .++++.+|..+++++++++...+. ...
T Consensus 146 lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~-------~~~ 216 (252)
T 4db8_A 146 LLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNE-------QKQ 216 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHH-------HHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHH-------HHH
Confidence 8888899999999999999987641 2211111 45788999999 999999999999999999864321 111
Q ss_pred cch-HHHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 454 GNC-QQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 454 ~~~-~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
... ..+++.+.+.+.+ ++.++..|+++|.+++
T Consensus 217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 111 2477888888876 6899999999998875
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.93 E-value=7.7e-07 Score=101.12 Aligned_cols=307 Identities=9% Similarity=0.078 Sum_probs=222.1
Q ss_pred chHHHHHhhhcCcchhhhHHHHHHHHHhhCCCC-CCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCC
Q 002876 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPS-PEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGST 445 (872)
Q Consensus 367 ~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
.++..+.+.+.+.... ++|+.+++.+++... ....++++-.++|.++... .|....||.+|..++..+...++
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~--- 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNA-GNKDKEIQSVASETLISIVNAVN--- 127 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC---
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC---
Confidence 4556666666664323 999999999996553 2346788878899999999 99999999999999999999774
Q ss_pred CCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhh
Q 002876 446 LETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRL 523 (872)
Q Consensus 446 ~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v 523 (872)
......++|.++..+.. ....+..|+.++..+++.. +..+...++.++|.+...+-+.+ +.+
T Consensus 128 -------~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~~d~k---~~v 191 (986)
T 2iw3_A 128 -------PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA------KDQVALRMPELIPVLSETMWDTK---KEV 191 (986)
T ss_dssp -------GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS------HHHHHHHHHHHHHHHHHHTTCSS---HHH
T ss_pred -------HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh------HHHHHHhccchhcchHhhcccCc---HHH
Confidence 34557899999999974 3678889999999999865 46678899999999999998774 678
Q ss_pred HHHHHHHHHHHHHcccc-CcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHh
Q 002876 524 RTAAYETLNEVVRCSTD-ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVF 602 (872)
Q Consensus 524 ~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 602 (872)
+..+..++..++...+. ++.++++ .+++.+.. ++. .-+|+..+..+---. ++-
T Consensus 192 ~~~~~~~~~~~~~~~~n~d~~~~~~----~~~~~~~~--------p~~----------~~~~~~~l~~~tfv~----~v~ 245 (986)
T 2iw3_A 192 KAAATAAMTKATETVDNKDIERFIP----SLIQCIAD--------PTE----------VPETVHLLGATTFVA----EVT 245 (986)
T ss_dssp HHHHHHHHHHHGGGCCCTTTGGGHH----HHHHHHHC--------TTH----------HHHHHHHHTTCCCCS----CCC
T ss_pred HHHHHHHHHHHHhcCCCcchhhhHH----HHHHHhcC--------hhh----------hHHHHHHhhcCeeEe----eec
Confidence 88999999998887774 4555544 44444432 111 223344332211111 113
Q ss_pred hHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh--hhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 603 MQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG--QDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 603 ~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
.|-+.-+.|.+...|+.+...++.++...+.++++-.. ....||++.++|.+.+..+...+|++|..+-.++..+.+.
T Consensus 246 ~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 246 PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 35667788999999998888888899999999998765 4788999999999999998888999999999999998887
Q ss_pred Hhc-c--------ccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHH
Q 002876 681 LED-K--------ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 722 (872)
Q Consensus 681 ~~~-~--------~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 722 (872)
.+. . .......+...+...+.... .......+...++.++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~~~ 375 (986)
T 2iw3_A 326 GNVGEDDAIPELSHAGDVSTTLQVVNELLKDET-VAPRFKIVVEYIAAIGA 375 (986)
T ss_dssp HTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTSC-CCGGGHHHHHHHHHHHH
T ss_pred hccccccccccccccchHHHHHHHHHHHhcccc-cccchhhHHHHHHHHHH
Confidence 653 1 11234566666777776543 12233334444444443
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.92 E-value=3.5e-06 Score=95.78 Aligned_cols=302 Identities=12% Similarity=0.186 Sum_probs=212.1
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhhcC--CCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccc-cccchhhHH
Q 002876 97 ILKTLSSPAHDARSTASQVVAKVAGIELP--HKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-DAVEQDHVN 173 (872)
Q Consensus 97 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~-~~l~~~~~~ 173 (872)
+++.+...+..-+..++..++.+.....+ ...| .++..+...+.+.... ++|+..++.+++.... ..+ .+++-
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~ 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIV 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchH
Confidence 55556654444556777777777664322 1234 6888888888765333 8999999999977632 123 56777
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhHH
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSP-EVKIRQAAFECLVAISSTYYE 252 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~ 252 (872)
.++|.++.... |....||.+|-.+...++..++..- ...+++.++..+... .|..+..++.++..+++..++
T Consensus 95 ~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a-----~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 95 QLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPVA-----IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp TTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGG-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 78899998888 8889999999999988876544321 256788888777544 699999999999999998899
Q ss_pred hhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcc
Q 002876 253 KLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ 332 (872)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 332 (872)
.+...+++++|.+...+.|..+++...|.+.+..+|... ...-+...+|.++++|.+.
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~----------------------~n~d~~~~~~~~~~~~~~p 225 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV----------------------DNKDIERFIPSLIQCIADP 225 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC----------------------CCTTTGGGHHHHHHHHHCT
T ss_pred HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC----------------------CCcchhhhHHHHHHHhcCh
Confidence 899999999999999999988888888887777766421 0111223345555554431
Q ss_pred cCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 002876 333 EEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALN 412 (872)
Q Consensus 333 ~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~ 412 (872)
+ ++ -+|+..|+. . .+-.+.-.+.+.-++|
T Consensus 226 ~----------~~----~~~~~~l~~--------------------~-----------------tfv~~v~~~~l~~~~p 254 (986)
T 2iw3_A 226 T----------EV----PETVHLLGA--------------------T-----------------TFVAEVTPATLSIMVP 254 (986)
T ss_dssp T----------HH----HHHHHHHTT--------------------C-----------------CCCSCCCHHHHHHHHH
T ss_pred h----------hh----HHHHHHhhc--------------------C-----------------eeEeeecchhHHHHHH
Confidence 0 11 122221111 0 0112334567788899
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhc
Q 002876 413 FMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGF 488 (872)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~ 488 (872)
.+..+| ++....+++.++..+.++++...+ |.....|++.++|.+-+..+. .|++|..+-.|+..+.+.-
T Consensus 255 ~l~r~l-~~~~~~~~r~~~~~~~n~~~lv~~-----~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 255 LLSRGL-NERETGIKRKSAVIIDNMCKLVED-----PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHH-TSSSHHHHHHHHHHHHHHHTTCCC-----HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-ccCcchhheeeEEEEcchhhhcCC-----HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 999999 999999999999999999997643 344566777777777776653 6999999999999887653
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.91 E-value=4.9e-08 Score=96.29 Aligned_cols=235 Identities=14% Similarity=0.110 Sum_probs=169.2
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002876 38 FLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVA 117 (872)
Q Consensus 38 ~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~ 117 (872)
.+..|...+.++ ++.+|..|+..|.+......... ..-......+.+++.+.+++..+|..++.+++
T Consensus 3 ~i~~L~~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~-----------~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~ 69 (252)
T 4hxt_A 3 DVEKLVKLLTST--DSETQKEAARDLAEIASGPASAI-----------KAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 69 (252)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHH-----------HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHH-----------HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 356677777753 58999999999999775432100 01112245677889999999999999999999
Q ss_pred HHHHhhcCCC---CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHH
Q 002876 118 KVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRL 194 (872)
Q Consensus 118 ~i~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~ 194 (872)
.++....... .-...++.+...+.++++.+|..++.+|..++... ++....-.-...++.+++.+. ++++.+|.
T Consensus 70 ~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~ 146 (252)
T 4hxt_A 70 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLT--STDSEVQK 146 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTT--CSCHHHHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHc--CCCHHHHH
Confidence 9986421100 01357889999999999999999999999998543 221101112356788888888 78899999
Q ss_pred HHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCC
Q 002876 195 AATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDE 273 (872)
Q Consensus 195 ~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 273 (872)
.++.++.++....+.... .......++.+..++.++++.+|..++.+|..++...+........ ..++.+...+.+.+
T Consensus 147 ~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 147 EAARALANIASGPDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHcCCHHHHH-HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc
Confidence 999999997653221110 0011246788888899999999999999999998765554333332 57888888889989
Q ss_pred hhhHHHHHHHHHHHHH
Q 002876 274 EPVALQAIEFWSSVCD 289 (872)
Q Consensus 274 ~~v~~~a~~~~~~l~~ 289 (872)
++++..|+.++..++.
T Consensus 226 ~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 226 SEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998886
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.90 E-value=1.1e-07 Score=102.67 Aligned_cols=374 Identities=12% Similarity=0.069 Sum_probs=220.4
Q ss_pred hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccC
Q 002876 366 PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (872)
Q Consensus 366 ~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
..-+|.+.+.+.+++...+..|..++..++.... .....+ ...+|.++..| .++++.++..|+++|.+++.....
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~--~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND--KVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh--HHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCH
Confidence 3445666667777788888888889988886431 112222 34679999999 999999999999999999873100
Q ss_pred CCCCCcccCccchHHHHHHHHHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhc-------
Q 002876 444 STLETPIINQGNCQQIISVLLQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH------- 514 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~------- 514 (872)
+ ....-.-...+|.|++.|.. +..++..++++|.++...- .. +.. ....-++.|+..+.
T Consensus 124 ~-----nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~---k~~---I~~~alp~Lv~LL~~p~sg~~ 191 (584)
T 3l6x_A 124 D-----NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SI---KME---IVDHALHALTDEVIIPHSGWE 191 (584)
T ss_dssp H-----HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GG---HHH---HHHHTHHHHHHHTHHHHHCCC
T ss_pred H-----HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hh---hHH---HHhccHHHHHHHHhccccccc
Confidence 0 00001112467788888874 4688999999999996531 10 111 11223444444331
Q ss_pred c--------CCchhhhhHHHHHHHHHHHHHccccCcHHHH--HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 002876 515 R--------EDAGESRLRTAAYETLNEVVRCSTDETAPMV--MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGC 584 (872)
Q Consensus 515 ~--------~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (872)
. .+..+..++..+..+|..+....+....... ..+++.++..+...+.... .++ ..+..++.+
T Consensus 192 ~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~--~~~-----~~~enav~a 264 (584)
T 3l6x_A 192 REPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKD--SDS-----KLVENCVCL 264 (584)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTC--CSC-----HHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccC--ccH-----HHHHHHHHH
Confidence 0 0111457888899999888765432111111 2455667776655432110 111 122335555
Q ss_pred HHHHHHHhC----C------------------CcchhhHhhHhHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHhh-
Q 002876 585 LQVIIQKLG----S------------------SEQTKYVFMQYADQMMGLFLRVFAI-RSATAHEEAMLAIGALAYATG- 640 (872)
Q Consensus 585 l~~l~~~l~----~------------------~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~- 640 (872)
|..+..... . ...+.+.+ +-+..++.++.+++. .+..+++.|..+|.+++..-+
T Consensus 265 L~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L--~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELL--FQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHTTHHHHSTTCCC--------------CCCCGGGGG--GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHhhccccccccchhhhhhhcccccccccccCchhHHHH--hcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 555443211 0 00000000 113456778888864 467789999999999975322
Q ss_pred --hhhHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCC------CCCCc
Q 002876 641 --QDFLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQL------HRSVK 710 (872)
Q Consensus 641 --~~~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~------~~~v~ 710 (872)
..+...+ ...+|.|.+.|...+ ..++..++++|+.++...... ...-...++.|+.+|..... +.++.
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~~-~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNEH-ERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTV 420 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHH
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHH
Confidence 2222233 357999999998654 489999999999998753311 12235688999999987631 12345
Q ss_pred hhHHHHHHHHHHHhccchHHhHH-HHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhh
Q 002876 711 PPIFSCFGDIALAIGENFEKYLM-YAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQ 776 (872)
Q Consensus 711 ~~~~~~l~~i~~~~~~~~~~~l~-~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 776 (872)
..++.+++.|+....+......+ ..+|.|...+.... +...+++.+..++..++.
T Consensus 421 ~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-----------~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 421 ISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-----------RSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-----------SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-----------CChHHHHHHHHHHHHHHc
Confidence 66788888877544333333333 57888888886531 112445556556665553
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.89 E-value=1.1e-07 Score=90.57 Aligned_cols=186 Identities=17% Similarity=0.146 Sum_probs=142.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccC
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (872)
+..++..+.+++..+|..|...|.++.. +..+..|...+.+ .++.+|..|+..|.+.-.
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~---------------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---------------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC----------------
Confidence 5667777788999999999999999865 5777888888875 389999999998877432
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccc
Q 002876 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (872)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~ 164 (872)
++ ..+.+++.|.++++.+|..++.+++.+.. ++.++.|...+.++++.+|..++.+|+.+-. +
T Consensus 80 --~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~ 142 (211)
T 3ltm_A 80 --ER----AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---E 142 (211)
T ss_dssp --GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G
T ss_pred --HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---H
Confidence 11 23467788899999999999999987642 4577888889999999999999999987732 1
Q ss_pred cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002876 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (872)
Q Consensus 165 ~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~ 244 (872)
..++.+...+. |+++.||..|+.+++.+-. +..++.+...++++++.+|..+..+|.
T Consensus 143 ---------~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 143 ---------RAVEPLIKALK--DEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp ---------GGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23455666666 8899999999999998421 356666777777899999999999999
Q ss_pred HHHHHhH
Q 002876 245 AISSTYY 251 (872)
Q Consensus 245 ~l~~~~~ 251 (872)
.+-...+
T Consensus 200 ~~~~~~~ 206 (211)
T 3ltm_A 200 THKSFNH 206 (211)
T ss_dssp C------
T ss_pred hcCCCCC
Confidence 8766543
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.89 E-value=7.3e-07 Score=96.22 Aligned_cols=366 Identities=12% Similarity=0.058 Sum_probs=214.4
Q ss_pred CCc-hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 127 KQW-PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 127 ~~~-~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
..| ..-++.+++.+.++++.++..|...+..++... .+.-..-.-...+|.|++.+. +++..++..|+.+|.++..
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLD--HPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTS
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHc
Confidence 456 346888999999999999988889998887543 111000112345688899998 7899999999999999763
Q ss_pred hchhhccChhhHH-----HHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhH---HhhHhhHHHHHHHHHHH--------
Q 002876 206 FAQANFSNDMERD-----YIMRVVCEATLS-PEVKIRQAAFECLVAISSTYY---EKLAPYIQDIFNITAKA-------- 268 (872)
Q Consensus 206 ~~~~~~~~~~~~~-----~il~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~---~~~~~~~~~l~~~~~~~-------- 268 (872)
.- +...+. ..++.+..++.+ .+.+++..+..+|..+..... ......++.++..+..-
T Consensus 120 ~~-----~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 120 GR-----DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp SS-----CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred cC-----CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccc
Confidence 21 011222 246667777764 578889999989988876321 11222233344433210
Q ss_pred -----H-hcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCcc
Q 002876 269 -----V-REDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (872)
Q Consensus 269 -----~-~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~ 342 (872)
. ...+++++..|..++..++....+ ....+.. ..-+++.|+..+...-.+.+.++
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~----------------~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~-- 255 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSE----------------ARRKLRE-CDGLVDALIFIVQAEIGQKDSDS-- 255 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHH----------------HHHHHHH-STTHHHHHHHHHHHHHHTTCCSC--
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHH----------------HHHHHHH-cCCcHHHHHHHHHHhhcccCccH--
Confidence 0 123567888888888888642100 0011111 12234444444432100000001
Q ss_pred chHhHHHHHHHHHHHHHc-------------------------CCcc----hhchHHHHHhhhc-CcchhhhHHHHHHHH
Q 002876 343 WNIAMAGGTCLGLVARTV-------------------------GDDI----VPLVMPFVEENIT-KQEWRQREAATYAFG 392 (872)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~-------------------------~~~~----~~~l~~~l~~~~~-~~~~~~r~aal~~l~ 392 (872)
.....|..+|..|+... ++.+ -+..++.+...+. +.++.++++|..+|.
T Consensus 256 -~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 256 -KLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334 (584)
T ss_dssp -HHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 22222333333333211 0000 1223444444443 456889999999999
Q ss_pred HhhCCCCCC--cchHHH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc
Q 002876 393 SILEGPSPE--KLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK 468 (872)
Q Consensus 393 ~l~~~~~~~--~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (872)
.++.+..+. .....+ ...+|.+...+ .+++..++..|+++|++++.... .....-...+|.|+..|.
T Consensus 335 nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL-~s~~~~v~~~A~~aL~nLs~~~~--------~~~~I~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 335 NLCAGRWTYGRYIRSALRQEKALSAIADLL-TNEHERVVKAASGALRNLAVDAR--------NKELIGKHAIPNLVKNLP 405 (584)
T ss_dssp HHHSSCSHHHHHHHHHHTSHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCS--------CHHHHHHHHHHHHHHTSS
T ss_pred HHHcCCccccHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChh--------HHHHHHhCCHHHHHHHhc
Confidence 998764211 111122 46689999999 99999999999999999998532 223344678899998887
Q ss_pred CC---------hhHHHHHHHHHHHHHHhcccCCCCCCCCchhH--HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHc
Q 002876 469 DV---------PNVAEKACGALYFLAQGFEDAISPSSPLTPFF--QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (872)
Q Consensus 469 d~---------~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l--~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~ 537 (872)
.. ..+...||++|.+++..-.. ....+ ...++.|...+.+.+. .+.+++.|..+|..+...
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-------~~~~I~~~g~I~~Lv~LL~s~~~-~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLE-------AAKKLRETQGIEKLVLINKSGNR-SEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-------HHHHHHHTTHHHHHHHHHTCSSS-CHHHHHHHHHHHHHHHTS
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHH-------HHHHHHHCCChHHHHHHHhCCCC-ChHHHHHHHHHHHHHHcC
Confidence 42 46788899999998753211 01111 2357777777765421 456777888888777653
No 72
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.87 E-value=1.9e-07 Score=88.03 Aligned_cols=181 Identities=17% Similarity=0.158 Sum_probs=142.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccC
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~ 84 (872)
...+++.+.++|..+|..|...|.++.. +..+..|...+.+ .++.+|..|+..|.+.-.
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~---------------- 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---------------- 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC----------------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC----------------
Confidence 4577888889999999999999999865 4677788888864 478999999988876432
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccc
Q 002876 85 LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSS 164 (872)
Q Consensus 85 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~ 164 (872)
++ ..+.++..|.++++.+|..++.+++.+.. ++.++.+...+.++++.+|..++.+++.+-.
T Consensus 75 --~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 --ER----AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp --GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred --HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 11 23467788999999999999999987632 4577888888999999999999999987732
Q ss_pred cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002876 165 DAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (872)
Q Consensus 165 ~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~ 244 (872)
...++.+...+. |+++.||..|+.+++.+-. ...++.+...++++++.+|..+...|.
T Consensus 137 --------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 --------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp --------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 123455666676 7899999999999998521 345666677777889999999999887
Q ss_pred HH
Q 002876 245 AI 246 (872)
Q Consensus 245 ~l 246 (872)
.+
T Consensus 195 ~l 196 (201)
T 3ltj_A 195 TH 196 (201)
T ss_dssp HC
T ss_pred HH
Confidence 64
No 73
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.86 E-value=9.3e-09 Score=101.45 Aligned_cols=236 Identities=17% Similarity=0.115 Sum_probs=168.2
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 002876 36 PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQV 115 (872)
Q Consensus 36 ~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~ 115 (872)
+..+..+...+.++ ++++|..|+..|++.+...... . ..-......+.+++.|.++++.+|..++.+
T Consensus 11 ~~~~~~~~~~L~s~--~~~~~~~a~~~L~~~l~~~~~~--------~---~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~ 77 (252)
T 4db8_A 11 GSELPQMTQQLNSD--DMQEQLSATRKFSQILSDGNEQ--------I---QAVIDAGALPALVQLLSSPNEQILQEALWA 77 (252)
T ss_dssp TCSHHHHHHHHHSS--CSSHHHHHHHHHHHHHHHHHHH--------H---HHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCCch--------H---HHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 45566677777753 7889999999998877531110 0 011222456789999999999999999999
Q ss_pred HHHHHHhhcCC-C--CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHH
Q 002876 116 VAKVAGIELPH-K--QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDV 192 (872)
Q Consensus 116 l~~i~~~~~~~-~--~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~v 192 (872)
++.++...... . .....++.|.+.+.++++.+|..|+.+|+.++... +.....-.-...++.+++.+. ++++.+
T Consensus 78 L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~--~~~~~v 154 (252)
T 4db8_A 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS--SPNEQI 154 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHGGG--CSCHHH
T ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-chHHHHHHHCCCHHHHHHHHh--CCCHHH
Confidence 99998632110 0 11357899999999999999999999999997653 111001122357788888888 789999
Q ss_pred HHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhc
Q 002876 193 RLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVRE 271 (872)
Q Consensus 193 r~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~ 271 (872)
|..|+.++.++....+.... .......++.+..++.++++.++..++.+|..++...+.......+ ..++.+...+.+
T Consensus 155 ~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 155 LQEALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHcCChHHHH-HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence 99999999997743221110 0001235788888898999999999999999998655544333333 577888888888
Q ss_pred CChhhHHHHHHHHHHHH
Q 002876 272 DEEPVALQAIEFWSSVC 288 (872)
Q Consensus 272 ~~~~v~~~a~~~~~~l~ 288 (872)
.+++++..|..++..++
T Consensus 234 ~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 234 ENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp SSSHHHHTHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 88999999998887765
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.86 E-value=8.5e-08 Score=90.55 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=138.1
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 172 VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
.+...+.+++.+. ++++.+|..|+.+++.+-. ...++.+...+.++++.+|..++..|..+..
T Consensus 12 ~~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--- 74 (201)
T ss_dssp CHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred CCcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---
Confidence 4556677777888 8999999999999987421 1234556677788999999999999987532
Q ss_pred HhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhc
Q 002876 252 EKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLK 331 (872)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 331 (872)
+..++.+...+.++++.+|..++..+..+.. +..++.+...+..
T Consensus 75 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------------------------~~~~~~L~~~l~d 118 (201)
T 3ltj_A 75 -------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------------------------ERAVEPLIKALKD 118 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------------------------GGGHHHHHHHTTC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------------------------HHHHHHHHHHHcC
Confidence 1234455566788899999999988776542 1234555555431
Q ss_pred ccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHH
Q 002876 332 QEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIAL 411 (872)
Q Consensus 332 ~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~ 411 (872)
.++.+|..|..+|+.+.. +..++.+.+.+.++++.+|.+++.+++.+.. +..+
T Consensus 119 ---------~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~ 171 (201)
T 3ltj_A 119 ---------EDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVR 171 (201)
T ss_dssp ---------SSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHH
T ss_pred ---------CCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHH
Confidence 236889888888877642 4566777788888999999999999998832 4467
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 002876 412 NFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
+.+...+ +|+++.||.+|..+++++...
T Consensus 172 ~~L~~~l-~d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 172 AAMEKLA-ETGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHHHHhh
Confidence 7788888 999999999999999987653
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.85 E-value=5e-08 Score=92.97 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=135.2
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHh
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEK 253 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 253 (872)
..++.++..+. ++++.+|..|+..++.+-. +..++.+...+.++++.+|..++.+|..+..
T Consensus 19 ~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 34566667777 8899999999999987421 1345666677888999999999999987642
Q ss_pred hHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhccc
Q 002876 254 LAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQE 333 (872)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 333 (872)
+..++.+...+.++++.+|..++..+..+.. +..++.+...+.
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------------------------~~~~~~L~~~l~--- 122 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------------------------ERAVEPLIKALK--- 122 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------------------------GGGHHHHHHHTT---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------------------------HHHHHHHHHHHh---
Confidence 1234455566788999999999988776542 123455555543
Q ss_pred CCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 002876 334 EDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNF 413 (872)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~ 413 (872)
+.++.+|..|..+|+.+.. +..++.+.+.+.++++.+|.+++.+++.+.. +..++.
T Consensus 123 ------d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~ 178 (211)
T 3ltm_A 123 ------DEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAA 178 (211)
T ss_dssp ------CSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHH
Confidence 1236889888888877632 3456777777888999999999999998842 456777
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 414 MLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
+...+ +|+++.||..|..+|+.+.....
T Consensus 179 L~~~l-~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 179 MEKLA-ETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHH-HHCCHHHHHHHHHHHHC------
T ss_pred HHHHH-hCCCHHHHHHHHHHHHhcCCCCC
Confidence 88888 99999999999999998887653
No 76
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.80 E-value=7.1e-08 Score=101.60 Aligned_cols=326 Identities=11% Similarity=0.060 Sum_probs=193.0
Q ss_pred cchhchHHHHHhhhcC--------cchhhhHHHHHHHHHhhCCCCCCcchH-HHHHHH----------HHHHHHhccCCc
Q 002876 363 DIVPLVMPFVEENITK--------QEWRQREAATYAFGSILEGPSPEKLVP-LVNIAL----------NFMLTALMQDPN 423 (872)
Q Consensus 363 ~~~~~l~~~l~~~~~~--------~~~~~r~aal~~l~~l~~~~~~~~~~~-~~~~i~----------~~l~~~l~~d~~ 423 (872)
..+|.++.++...-.+ .+...|..|..+++.|+.+.. +.... ....++ +.++..+ ..+.
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~ 147 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIRAYCETCWEWQ-EAHE 147 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCc-chhHHHHHHHHHHHHHHhhhhhHHHHHHH-Hhhc
Confidence 3456666666532110 235889999999999998763 33222 111122 3344445 3221
Q ss_pred -------HHHHH-------HHHHHHHHhhhhccCCCCCCcccCccch-HHHHHHHHHhcc------------CChhHHHH
Q 002876 424 -------NHVKD-------TTAWTLGRMFEFLHGSTLETPIINQGNC-QQIISVLLQSMK------------DVPNVAEK 476 (872)
Q Consensus 424 -------~~vr~-------~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~------------d~~~v~~~ 476 (872)
..|++ .|.|+|++++..-. ...... ...++.|+..+. +++.++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e--------~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~ 219 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE--------HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRY 219 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHH--------HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHH--------HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHH
Confidence 11655 88999999876421 111111 134555555542 13678999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCchhH---HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHH--HHHHH
Q 002876 477 ACGALYFLAQGFEDAISPSSPLTPFF---QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMV--MQLVP 551 (872)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~l~~~l---~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~l~~ 551 (872)
|+|+|.+++..-. .....+ ...++.|+..+... ++.++..+.++|..+...........+ ...+|
T Consensus 220 Aa~aL~nLa~~~~-------~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~ 289 (458)
T 3nmz_A 220 AGMALTNLTFGDV-------ANKATLCSMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 289 (458)
T ss_dssp HHHHHHHHHTTCH-------HHHHHHHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCCc-------ccHHHHHHcCCcHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHH
Confidence 9999999986421 111222 45688888888765 577899999999998654222222222 24567
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcccc----chhhH
Q 002876 552 LIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA----TAHEE 627 (872)
Q Consensus 552 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~----~~~~~ 627 (872)
.+++.+.. ..+. .++..+..+|..+....... +..+.. ....++.+.+++...+. .+++.
T Consensus 290 ~LV~lLl~--------s~~~----~v~~~A~~aL~nLs~~~~~n---k~~I~~-~~Gal~~Lv~LL~~~~~~~~~~v~~~ 353 (458)
T 3nmz_A 290 ALMECALE--------VKKE----STLKSVLSALWNLSAHCTEN---KADICA-VDGALAFLVGTLTYRSQTNTLAIIES 353 (458)
T ss_dssp HHHHHHTT--------CCSH----HHHHHHHHHHHHHHHHCHHH---HHHHHH-STTHHHHHHHHTTCCCSSSTTHHHHH
T ss_pred HHHHHHhc--------CCCH----HHHHHHHHHHHHHccCCHHH---HHHHHH-hcCcHHHHHHHhcCCCCcchHHHHHH
Confidence 77765432 1112 23344666666665421110 000110 13467778888887654 37889
Q ss_pred HHHHHHHHHHH--hhhhhHhh-h-HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccH-HHHHHHHHHHccC
Q 002876 628 AMLAIGALAYA--TGQDFLKY-M-PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYC-DGIMTQLLKDLSS 702 (872)
Q Consensus 628 a~~~l~~l~~~--~~~~~~~~-~-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~ 702 (872)
+..+|..++.. .++..... . ...+|.|+..|.+. +..++..|+++|+.++...++...... ...++.|++++.+
T Consensus 354 A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 99999998863 12222222 2 24789999999865 458999999999999742222111111 2478999999987
Q ss_pred CCCCCCCchhHHHHHHHHHHHhccc
Q 002876 703 NQLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 703 ~~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
. +..++..+.++|..|+...+.+
T Consensus 433 ~--~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 433 K--HKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp S--SHHHHHHHHHHHHHHHTCCSCC
T ss_pred C--CHHHHHHHHHHHHHHHcCCHhh
Confidence 7 6788999999999998765543
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.74 E-value=5.5e-06 Score=70.85 Aligned_cols=215 Identities=12% Similarity=0.178 Sum_probs=153.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHh
Q 002876 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEE 297 (872)
Q Consensus 218 ~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~ 297 (872)
..++.-+..++.|+-|-+++.++..+..+.+.+|+...|.+.+++-.+- .++.-.........++.++...|
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i~P----- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKEKP----- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHhCH-----
Confidence 4678888889989999999999999999999999988887777665442 22222232333445566665332
Q ss_pred cCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhc
Q 002876 298 YGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENIT 377 (872)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~ 377 (872)
..+..++|+++....-. | -..|....-+|..++...|. ..+.++.-+...++
T Consensus 103 ------------------e~v~~vVp~lfanyrig--d-------~kikIn~~yaLeeIaranP~-l~~~v~rdi~smlt 154 (253)
T 2db0_A 103 ------------------ELVKSMIPVLFANYRIG--D-------EKTKINVSYALEEIAKANPM-LMASIVRDFMSMLS 154 (253)
T ss_dssp ------------------HHHHHHHHHHHHHSCCC--S-------HHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTS
T ss_pred ------------------HHHHhhHHHHHHHHhcC--C-------ccceecHHHHHHHHHHhChH-HHHHHHHHHHHHhc
Confidence 33345678888765432 1 15666667788888876643 34455555566777
Q ss_pred CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchH
Q 002876 378 KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQ 457 (872)
Q Consensus 378 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (872)
|++-..|.+++..+++++++. ..|+...+|.+...+ .|.+..||.+|..+++.++...+ -+.
T Consensus 155 skd~~Dkl~aLnFi~alGen~-----~~yv~PfLprL~aLL-~D~deiVRaSaVEtL~~lA~~np------------klR 216 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMGENS-----FKYVNPFLPRIINLL-HDGDEIVRASAVEALVHLATLND------------KLR 216 (253)
T ss_dssp CSSHHHHHHHHHHHHTCCTTT-----HHHHGGGHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCH------------HHH
T ss_pred CCChHHHHHHHHHHHHHhccC-----ccccCcchHHHHHHH-cCcchhhhHHHHHHHHHHHHcCH------------HHH
Confidence 888888999998888887764 345566677888899 99999999999999999998653 266
Q ss_pred HHHHHHHHhccC-ChhHHHHHHHHHHHHHH
Q 002876 458 QIISVLLQSMKD-VPNVAEKACGALYFLAQ 486 (872)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (872)
+++..-+..++| +.-|......+|+.+.-
T Consensus 217 kii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 217 KVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 777778888887 56666666677777653
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.71 E-value=1.9e-07 Score=88.93 Aligned_cols=193 Identities=17% Similarity=0.109 Sum_probs=140.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC---CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccc
Q 002876 92 QIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK---QWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (872)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~ 168 (872)
.....+..+|.++++.+|..++.+++.++....... .-...++.+++.+.++++.+|..|+.+++.++... ++...
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~ 90 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQ 90 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHH
Confidence 345578889999999999999999999985421100 01257899999999999999999999999997543 21110
Q ss_pred hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 002876 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~ 248 (872)
.-.-...++.++..+. ++++.+|..|+.++.++....+.... .......++.+..++.+++++++..++.+|..++.
T Consensus 91 ~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 91 AVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 0112345788888888 77899999999999997643221110 00112467888888988999999999999999998
Q ss_pred HhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 002876 249 TYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVC 288 (872)
Q Consensus 249 ~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (872)
..++....... ..++.+...+.+.+++++..|..++..++
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 65543322222 57788888888999999999999888775
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.66 E-value=2.2e-06 Score=90.31 Aligned_cols=220 Identities=13% Similarity=0.059 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHHHHHHHhHHhhHhh---HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHHHhcCCCCCCCCC
Q 002876 232 EVKIRQAAFECLVAISSTYYEKLAPY---IQDIFNITAKAVREDEEPVALQAIEFWSSVCDE-EIDILEEYGGDFSGDSD 307 (872)
Q Consensus 232 ~~~~r~~~~~~l~~l~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 307 (872)
++.++..+..+|..++...... ... ....++.++..+.+.+++++..|..++..++.. ..+
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~-k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-------------- 277 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVAN-KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-------------- 277 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH-HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH--------------
T ss_pred CHHHHHHHHHHHHHHhCCCccc-HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH--------------
Confidence 4678899999999998754422 112 245688888888988999999999888887641 000
Q ss_pred CchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc-C--Ccc--hhchHHHHHhhhcCcc--
Q 002876 308 IPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV-G--DDI--VPLVMPFVEENITKQE-- 380 (872)
Q Consensus 308 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~--~~~--~~~l~~~l~~~~~~~~-- 380 (872)
....+.. ...+|.|++.+.... ...++..|..+|..++... . ..+ ....+|.+.+.+.+.+
T Consensus 278 --~k~~I~~--~GaI~~LV~lLl~s~--------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~ 345 (458)
T 3nmz_A 278 --SKKTLRE--VGSVKALMECALEVK--------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 345 (458)
T ss_dssp --HHHHHHH--TTHHHHHHHHHTTCC--------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred --HHHHHHH--cCCHHHHHHHHhcCC--------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCc
Confidence 0111111 134566666543211 1255666777777777622 1 111 1234555555555432
Q ss_pred -h-hhhHHHHHHHHHhhC---CCCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCcc
Q 002876 381 -W-RQREAATYAFGSILE---GPSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQG 454 (872)
Q Consensus 381 -~-~~r~aal~~l~~l~~---~~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (872)
| .+++.+..+|..++. +. ++...... ...++.++..+ .+.+..++..|++++++++...+. ....
T Consensus 346 ~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~G~i~~Lv~LL-~~~~~~v~~~A~~aL~nLa~~~~~-------~~~~ 416 (458)
T 3nmz_A 346 NTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPK-------DQEA 416 (458)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHS-SCSCHHHHHHHHHHHHHHHSSCHH-------HHHH
T ss_pred chHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHcccHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCHH-------HHHH
Confidence 2 478888888888775 32 12222222 34788999999 999999999999999999853221 1111
Q ss_pred c-hHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHh
Q 002876 455 N-CQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (872)
Q Consensus 455 ~-~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
. -...++.|...+.. +++++..|+++|.+++..
T Consensus 417 i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 417 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 13568888888875 689999999999999875
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.64 E-value=1.1e-05 Score=90.36 Aligned_cols=315 Identities=17% Similarity=0.098 Sum_probs=184.3
Q ss_pred hhHHHHHHHhhc---CCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCC---C---CHHHHHHHHHHH
Q 002876 130 PELIGALLSNIH---QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASE---S---NNDVRLAATRAL 200 (872)
Q Consensus 130 ~~l~~~l~~~l~---~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~---~---~~~vr~~al~~l 200 (872)
.+-+..|...+. ++++.+|.+|+..++.+.... . . .++..|...+.+.+ . ...+|..|+-.|
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~-~----~----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF-G----R----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT-T----H----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC-c----H----HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 355666666665 557789999999999886543 1 1 23444544454211 1 267888888777
Q ss_pred HHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHH
Q 002876 201 YNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQA 280 (872)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a 280 (872)
+-.. +... ...+++.+...+.+++..++..+...|+.+.-.... ...+..++..+. .+.++.++..+
T Consensus 462 Gla~--~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--~~ai~~LL~~~~---e~~~e~vrR~a 528 (963)
T 4ady_A 462 GLAA--MGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--PEAIHDMFTYSQ---ETQHGNITRGL 528 (963)
T ss_dssp HHHS--TTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHH---HCSCHHHHHHH
T ss_pred HHHh--cCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--HHHHHHHHHHHh---ccCcHHHHHHH
Confidence 7632 1111 134566666666666666666666666654221110 122344444432 45566777766
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHc
Q 002876 281 IEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360 (872)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~ 360 (872)
...++.+.-. -+.. ++.+++.+.. +..+.+|..+..+++.-....
T Consensus 529 algLGll~~g-----------------------~~e~----~~~li~~L~~--------~~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 529 AVGLALINYG-----------------------RQEL----ADDLITKMLA--------SDESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHHHTTT-----------------------CGGG----GHHHHHHHHH--------CSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhhhCC-----------------------ChHH----HHHHHHHHHh--------CCCHHHHHHHHHHHHHHhcCC
Confidence 6555543210 0122 3344444432 122567765555543222222
Q ss_pred CCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 002876 361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEF 440 (872)
Q Consensus 361 ~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~ 440 (872)
|. ...+-.++....++.+..+|.+|+.+++.+.-+. ++. ++.++..+.++.++.||..+..++|.++..
T Consensus 574 Gn--~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~e~--------v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 574 GN--NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-YTT--------VPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp CC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-CSS--------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred CC--HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-HHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 32 2222234444445667789999999999887553 121 223333332778999999999999988865
Q ss_pred ccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCch
Q 002876 441 LHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAG 519 (872)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~ 519 (872)
.+. ..++..|.....| +..||..|+.+|+.+.... .....|.+..++..+.+...+...
T Consensus 643 n~~-------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt------nna~~~rva~~l~~L~~~~~dk~~- 702 (963)
T 4ady_A 643 KGL-------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ------TEKLNPQVADINKNFLSVITNKHQ- 702 (963)
T ss_dssp SCC-------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC------CTTTCTTHHHHHHHHHHHHHCSSS-
T ss_pred CCc-------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC------ccccchHHHHHHHHHHHHHhcccc-
Confidence 431 3677777777777 6899999999999986542 566678899999998888865321
Q ss_pred hhhhHHHHHHHHH
Q 002876 520 ESRLRTAAYETLN 532 (872)
Q Consensus 520 ~~~v~~~~~~~l~ 532 (872)
++..+-.+.-+.|
T Consensus 703 d~~~~fga~iAqG 715 (963)
T 4ady_A 703 EGLAKFGACVAQG 715 (963)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3445544444444
No 81
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.63 E-value=0.00012 Score=84.68 Aligned_cols=741 Identities=10% Similarity=0.078 Sum_probs=346.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHHHhhcC--CCChhHHHHHHHHHh-----cccccchhhh
Q 002876 5 VTQILLNAQSVDGTVRKQAEESLKQYQEQNL---PGFLLSLAGELVND--EKPVESRKLAGLILK-----NALDAKEQHR 74 (872)
Q Consensus 5 l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~---~~~~~~L~~~l~~~--~~~~~~r~~a~~~l~-----~~i~~~~~~~ 74 (872)
+..+++-+.|.=++||+.|+..|...-+.-+ ..+++.+++.|... +.+.+--..|+-+|. +.+..
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~----- 209 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT----- 209 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG-----
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc-----
Confidence 3455566677889999999999998766521 23555556665431 223333333332222 12222
Q ss_pred HHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHH
Q 002876 75 KFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLET 154 (872)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~ 154 (872)
.| .....+-..++++...+.+.|++.+..+...+......-..+..+-..+.+.+..++..+ ..+...
T Consensus 210 ------d~-----~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i-~~~~~~ 277 (997)
T 1vsy_5 210 ------DY-----KDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTI-NLQVEA 277 (997)
T ss_dssp ------CH-----HHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSST-TSHHHH
T ss_pred ------Ch-----HHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHH-HHHHHH
Confidence 22 333455667788877777888888887777666533211122111111112233222111 111222
Q ss_pred HHHhhhhccccccchhhHHHHHHHHHhcccCCCCC--HHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCC
Q 002876 155 LGYICEEVSSDAVEQDHVNKILTAVVQGMNASESN--NDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE 232 (872)
Q Consensus 155 l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 232 (872)
.....+.- .+.. ......+...++...++ +.. +.....++..+..+.......+ .+..++.+.+.+.++.
T Consensus 278 ~~~~~~~~-r~~~-~~~~~~L~~~l~~~~~~-~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dh 349 (997)
T 1vsy_5 278 VKLAKKKK-REYY-LSLLVDLQDKLLDKLDN-EKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKH 349 (997)
T ss_dssp HHHHTTHH-HHHH-HHHHHHHHHHHHHHHHS-STTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCC
T ss_pred HHHHHHHH-HHHH-HHHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCC
Confidence 21111110 0001 12334455445554432 445 8888888877665443221111 1567888888888999
Q ss_pred HHHHHHHHHHHHHHHHHhHHh-hHhh-HHHHHHHHHHHHhcCC-hhhHH------HHHHHHHH-HHHHHHHHHHhcCCCC
Q 002876 233 VKIRQAAFECLVAISSTYYEK-LAPY-IQDIFNITAKAVREDE-EPVAL------QAIEFWSS-VCDEEIDILEEYGGDF 302 (872)
Q Consensus 233 ~~~r~~~~~~l~~l~~~~~~~-~~~~-~~~l~~~~~~~~~~~~-~~v~~------~a~~~~~~-l~~~~~~~~~~~~~~~ 302 (872)
|.+|..+..++..++...-.. ..++ ...+.. . ... ..++. .-.+.|.. ..+.+. ..|--+.
T Consensus 350 p~~R~~a~~~l~~il~~~k~~~~~~~d~~~~~~----~--~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~---~~yfid~ 420 (997)
T 1vsy_5 350 PEIIHLVVKSLLSTCNKIISLSDYEYDITRAYK----N--EFNPSFVEILDTSTTSFPKTFTEEMNNFDN---PKYFIDL 420 (997)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTTCGGGGSS----S--SCCCTTEEEEESCSTTTHHHHHHHHSCCSS---CCCBCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHhhc----c--ccCCCCceecCCCCccHHHHHHHHHhcccC---CccceeC
Confidence 999999999998887753211 0011 000000 0 000 00000 00111111 000000 0000000
Q ss_pred C---C--CC------------C--Cc-hHhHHHhhh-----hhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHH
Q 002876 303 S---G--DS------------D--IP-CFYFIKHAL-----PVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVA 357 (872)
Q Consensus 303 ~---~--~~------------~--~~-~~~~~~~~l-----~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~ 357 (872)
. | .+ . +. .-..+...+ +..+.-++..+.. |+ ++.+.|+... ...+..+.
T Consensus 421 ~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~i~~~f~~~~~~~~~~~l~~~l~q--e~--~~~~~F~~~~--v~l~k~lf 494 (997)
T 1vsy_5 421 RAYVGWLCWGRLMYVMSPKALKLNLRENELEVLKTAGHLLTREFLRDVTMNLVQ--DN--ETRGVFSSGN--VSFFSLVI 494 (997)
T ss_dssp CCCSBTTBCCSEEEEECTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TT--TTTCCCCHHH--HHHHHHHH
T ss_pred CCCCeEeeeCCceeEeCCCCCCCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHh--hc--cccCccccch--HHHHHHHH
Confidence 0 1 00 0 00 000111111 2233333333331 21 1233444332 34444454
Q ss_pred ----HHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCC---CCcchHHHHHHHHHHHHHhcc-CCcHHHHHH
Q 002876 358 ----RTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPS---PEKLVPLVNIALNFMLTALMQ-DPNNHVKDT 429 (872)
Q Consensus 358 ----~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~~~~i~~~l~~~l~~-d~~~~vr~~ 429 (872)
+.+|+..++.+.+.+.....+.+-....++.-.++.+..+.. .+.....-.-+.|.+...+ . +-.+.....
T Consensus 495 ~l~~rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l-~~~lt~et~~~ 573 (997)
T 1vsy_5 495 LLISSGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCL-DYELNHDAFEI 573 (997)
T ss_dssp HHHTTTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHH-SSCCCTTHHHH
T ss_pred HHHhcccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH-hccCCchhHHH
Confidence 456889999999999998888776667777778888877753 1233333356677777777 6 455555544
Q ss_pred HHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHH--h-c--cC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHH
Q 002876 430 TAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQ--S-M--KD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQ 503 (872)
Q Consensus 430 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~--~-l--~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~ 503 (872)
-..++.-+..... ..-...++..++. . + .. +.-........|..++...+- ... ...
T Consensus 574 W~~~i~~~~~~~D----------prR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~w------r~~-~~~ 636 (997)
T 1vsy_5 574 WSTLAWWLPAVVD----------LRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEF------RAP-DVG 636 (997)
T ss_dssp HHHHHHHHHHHSC----------GGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTT------SSC-CCH
T ss_pred HHHHHHHHhcCCC----------hhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcc------ccc-cHH
Confidence 3334443444321 2334466666622 1 1 11 111111222333333333211 111 134
Q ss_pred HHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHcccc-------------------------CcHHHHHHHHHHHHHHHH
Q 002876 504 EIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD-------------------------ETAPMVMQLVPLIMMELH 558 (872)
Q Consensus 504 ~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~-------------------------~~~~~~~~l~~~l~~~l~ 558 (872)
.++..++ +.++ ...+|+..-..+..+....-. ...+.+...++.+++.+.
T Consensus 637 ~~l~~~~--l~h~---y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~ 711 (997)
T 1vsy_5 637 KLFDELV--FDHP---YDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIK 711 (997)
T ss_dssp HHHHHCC--SCCS---CHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--hCCC---hHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHH
Confidence 4444444 4443 456887777777666554410 001222222233333332
Q ss_pred HHHhhh-cCChh--HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHH-HHHHHHHHHhcccc-chhhH-HHHHH
Q 002876 559 QTLEAQ-KLSSD--EREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQ-MMGLFLRVFAIRSA-TAHEE-AMLAI 632 (872)
Q Consensus 559 ~~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~-i~~~l~~~l~~~~~-~~~~~-a~~~l 632 (872)
...... ..++. .+... ...+-.++.-+...++... ...+.++++. ++|.++.+.+..+. ++... +..++
T Consensus 712 ~~~~~~~~~~~~~~~~s~y---~~~~kTvl~wl~~~l~~~~--~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l 786 (997)
T 1vsy_5 712 NLEDSVVGLNPQQFIKTDY---FYRTSTIFYWIKEMARGPN--KVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLY 786 (997)
T ss_dssp GGGGTTSSCCSTTTTTSHH---HHHHHHHHHHHHHHSSGGG--HHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHH
T ss_pred HhhhcccccCccccchHHH---HHHHHHHHHHHHHHhcCCC--ccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHH
Confidence 211100 00010 01111 1111122223333333221 1124455554 66666555444432 23332 33343
Q ss_pred HHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccc-cHHHHHHHHHHHccCCCCC-CCCc
Q 002876 633 GALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILP-YCDGIMTQLLKDLSSNQLH-RSVK 710 (872)
Q Consensus 633 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~-~~v~ 710 (872)
..++.. .--.++++.++..+......+.++ .|..++..+..+.-.---.+.+ ....+.+.++.+|.++ . .+||
T Consensus 787 ~~ls~~--~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~--q~~EVR 861 (997)
T 1vsy_5 787 AGLGYM--PIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNE--QFVEVR 861 (997)
T ss_dssp HHTSSS--CCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCS--SCHHHH
T ss_pred HHHhcC--CCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCC--ccHHHH
Confidence 333211 111234455666665555545678 9999988886665432111222 2246788888889888 6 7899
Q ss_pred hhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHH--HHHHHHHHHHHHHHHhhcccCCCccccc-
Q 002876 711 PPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEY--TNSLRNGILEAFSGIFQGFKGSPKTQLL- 787 (872)
Q Consensus 711 ~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 787 (872)
+.|..+++-+....+. ....+.++..+.+.+...... +.....+ ....|-+++=.+++++.+. |-.+
T Consensus 862 e~Aa~tLsgll~c~~~--~~~~~~li~~f~~~~~~~~~~---~~~~~~~~~~~~~rH~aVLgL~AlV~a~-----Py~vP 931 (997)
T 1vsy_5 862 VRAASILSDIVHNWKE--EQPLLSLIERFAKGLDVNKYT---SKERQKLSKTDIKIHGNVLGLGAIISAF-----PYVFP 931 (997)
T ss_dssp HHHHHHHHHHHHSCCS--HHHHHHHHHHHTTSSTTTSSC---HHHHHHHHHHCHHHHHHHHHHHHHHTTC-----SCCSS
T ss_pred HHHHHHHHHHHHcCCc--hhhHHHHHHHHHHHHhhcccc---cccccccchHHHHHHHHHHHHHHHHhhC-----CCCCC
Confidence 9999999999876512 111222222222222110000 0000000 0122334444556666652 2223
Q ss_pred -ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 002876 788 -MPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAG 831 (872)
Q Consensus 788 -~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~ 831 (872)
.+|+++++..|.....+ ...++.++=.++++.-++..+...
T Consensus 932 ~P~w~P~~l~~La~~~~~---~~~i~~tvk~tlseFkrTH~D~W~ 973 (997)
T 1vsy_5 932 LPPWIPKNLSNLSSWART---SGMTGNAAKNTISEFKKVRADTWK 973 (997)
T ss_dssp CCTHHHHHHHHHHTTSSS---CSSHHHHTHHHHHHHHHHTSTTHH
T ss_pred CCcccHHHHHHHHHHhCC---CCchHHHHHHHHHHHHhccchhHH
Confidence 46888888888777665 334899999999998888765543
No 82
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.62 E-value=4.1e-07 Score=86.58 Aligned_cols=197 Identities=16% Similarity=0.085 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 002876 35 LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQ 114 (872)
Q Consensus 35 ~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~ 114 (872)
.+++...|..++.+ .+..+|..|+..|.+......... ..-......+.+++.|.++++.+|..++.
T Consensus 10 ~~~~~~~l~~LL~s--~~~~v~~~a~~~L~~l~~~~~~~~-----------~~i~~~g~i~~L~~lL~~~~~~v~~~a~~ 76 (210)
T 4db6_A 10 HGSELPQMVQQLNS--PDQQELQSALRKLSQIASGGNEQI-----------QAVIDAGALPALVQLLSSPNEQILQEALW 76 (210)
T ss_dssp ---CHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHH-----------HHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ccchhHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCHHHH-----------HHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 35667777777765 479999999999999764221100 00111245677899999999999999999
Q ss_pred HHHHHHHhhcCC---CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHH
Q 002876 115 VVAKVAGIELPH---KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNND 191 (872)
Q Consensus 115 ~l~~i~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~ 191 (872)
+++.++...-.. -...+.++.++..+.++++.+|..|+.++..++... ++....-.-...++.+++.+. +++..
T Consensus 77 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~--~~~~~ 153 (210)
T 4db6_A 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS--SPNEQ 153 (210)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTT--CSCHH
T ss_pred HHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCcHHHHHHHHc--CCCHH
Confidence 999998532110 012457889999999999999999999999998643 222101112457788888888 67999
Q ss_pred HHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 002876 192 VRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 192 vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~ 248 (872)
+|..|+.++.++....+.... .......++.+..++.++++++|..++.+|..+++
T Consensus 154 v~~~a~~aL~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 154 ILQEALWALSNIASGGNEQKQ-AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHHTSCHHHHH-HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCcHHHH-HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999999999998753222110 01112467888888999999999999999988753
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.54 E-value=2.3e-06 Score=84.69 Aligned_cols=245 Identities=8% Similarity=0.042 Sum_probs=151.3
Q ss_pred HHHHHHHHhc--ChhHHHHHHHHHhhcC----------CCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHH
Q 002876 24 EESLKQYQEQ--NLPGFLLSLAGELVND----------EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKA 91 (872)
Q Consensus 24 ~~~L~~~~~~--~~~~~~~~L~~~l~~~----------~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 91 (872)
..+|.++... +++.-+...+.++.++ +.+.+.|..|+-.|.+++...... ..+ .+.
T Consensus 13 ~~~~~~~~~~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna------~~~------~~~ 80 (296)
T 1xqr_A 13 LVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNA------ADF------CQL 80 (296)
T ss_dssp -------CCSCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHH------HHH------HHT
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhH------HHH------HHc
Confidence 3455544322 1244566666777664 223467888888888877632110 011 111
Q ss_pred HHHHHHHH-hcCCCChHHHHHHHHHHHHHHHhhcCCCCc----hhHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhcccc
Q 002876 92 QIKSFILK-TLSSPAHDARSTASQVVAKVAGIELPHKQW----PELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSD 165 (872)
Q Consensus 92 ~i~~~ll~-~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~----~~l~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~ 165 (872)
...+.++. +|.++++.+|..++.+++.++... |...+ ...++.|++++++ ++..+|..|+.+|+.++... +.
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~-~~ 158 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ-EA 158 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC-HH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC-cH
Confidence 23456888 999999999999999999999643 10111 3578889998985 47889999999999998754 22
Q ss_pred ccchhh-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 002876 166 AVEQDH-VNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLV 244 (872)
Q Consensus 166 ~l~~~~-~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~ 244 (872)
.. ... -...++.+...+. +++..++..|+.+++++....++... ......+++.+..++.++++.++..++.+|.
T Consensus 159 ~~-~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~~~~~~-~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~ 234 (296)
T 1xqr_A 159 GL-LQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKG-TLCSMGMVQQLVALVRTEHSPFHEHVLGALC 234 (296)
T ss_dssp HH-HHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHH
T ss_pred HH-HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCChHHHH-HHHHcCCHHHHHHHHcCCChhHHHHHHHHHH
Confidence 11 111 1346778888888 67999999999999997753221100 0111346788888899999999999999999
Q ss_pred HHHHHhHHhhH------hhHHHHHHHHHHHHhcC--ChhhHHHHHHHHHH
Q 002876 245 AISSTYYEKLA------PYIQDIFNITAKAVRED--EEPVALQAIEFWSS 286 (872)
Q Consensus 245 ~l~~~~~~~~~------~~~~~l~~~~~~~~~~~--~~~v~~~a~~~~~~ 286 (872)
.++...+.... +.+..++.-....++.. ..++...+.++|..
T Consensus 235 ~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 235 SLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 99987543221 12334444444445422 23444445544433
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.47 E-value=5.4e-06 Score=78.89 Aligned_cols=182 Identities=16% Similarity=0.198 Sum_probs=134.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 002876 228 TLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSD 307 (872)
Q Consensus 228 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (872)
+.+.++..+.++++.|...+...++.+...++-++..+.-.+.+.+..+...+++++..+.+.-.+. .|
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~--~y--------- 123 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT--ET--------- 123 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT--TC---------
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--cc---------
Confidence 3456888899999999998887776666666667776554556778889999999988887643210 01
Q ss_pred CchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHH
Q 002876 308 IPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAA 387 (872)
Q Consensus 308 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aa 387 (872)
.+...-...++|.++..+.+.. -.+|..+..++..+...++. ..+++.+.+.+.+.||+.|+++
T Consensus 124 ----~~~~~ea~~~lP~LveKlGd~k---------~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~ 187 (266)
T 2of3_A 124 ----PMSQEEVSAFVPYLLLKTGEAK---------DNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSEC 187 (266)
T ss_dssp ----CCCHHHHHHHHHHHHHGGGCSS---------HHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHH
T ss_pred ----cchHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHH
Confidence 1222234567899988775311 27899999999888877653 2466777778899999999999
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHH---HHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 388 TYAFGSILEGPSPEKLVPLVNIAL---NFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 388 l~~l~~l~~~~~~~~~~~~~~~i~---~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
+..++.+.+..+.. + ...+ +.+...+ +|++..||.+|..++..+..+.+
T Consensus 188 l~~l~~li~~~G~~---~--~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 188 LLVIEYYITNAGIS---P--LKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHCSG---G--GGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC---c--cccccchHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999988765422 1 2245 8888999 99999999999999999988775
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.46 E-value=4.4e-05 Score=65.41 Aligned_cols=200 Identities=13% Similarity=0.128 Sum_probs=132.1
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh
Q 002876 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA 209 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (872)
.+++..++..+.+.-+.++..|+.++..+.+.. |+.. .+....++-++. . +.....-....++++.+...-|+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~-epl~~kL~vm~~----k-sEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLY-EPMLKKLFSLLK----K-SEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGH-HHHHHHHHHHHH----H-CCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHH-HHHHHHHHHHHh----h-cccCchHHHHHHHHhHHHHhCHH
Confidence 578888888888888889999999999988887 6655 444455444433 2 55666666777777776643332
Q ss_pred hccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 002876 210 NFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 210 ~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (872)
. ...++++++.-..-.++..|.....+|..++..+|..+. .++.-+...++++++.-+..|+.|+..+++
T Consensus 104 ~------v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~----~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 L------VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp H------HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred H------HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 2 245677777777777899999999999999998887544 344445556678888788889988888876
Q ss_pred HHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchH
Q 002876 290 EEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVM 369 (872)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 369 (872)
. .+.|+.++++.++..+. + .++ -+|..|.++|..++..-++ +-+.+.
T Consensus 174 n-------------------~~~yv~PfLprL~aLL~----D------~de---iVRaSaVEtL~~lA~~npk-lRkii~ 220 (253)
T 2db0_A 174 N-------------------SFKYVNPFLPRIINLLH----D------GDE---IVRASAVEALVHLATLNDK-LRKVVI 220 (253)
T ss_dssp T-------------------THHHHGGGHHHHHGGGG----C------SSH---HHHHHHHHHHHHHHTSCHH-HHHHHH
T ss_pred c-------------------CccccCcchHHHHHHHc----C------cch---hhhHHHHHHHHHHHHcCHH-HHHHHH
Confidence 3 23566666655444332 1 112 5777777888777765433 333333
Q ss_pred HHHHhhhcCcc
Q 002876 370 PFVEENITKQE 380 (872)
Q Consensus 370 ~~l~~~~~~~~ 380 (872)
..+. .++|.+
T Consensus 221 ~kl~-e~~D~S 230 (253)
T 2db0_A 221 KRLE-ELNDTS 230 (253)
T ss_dssp HHHH-HCCCSC
T ss_pred HHHH-HhcCcH
Confidence 3333 344444
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1e-06 Score=87.69 Aligned_cols=199 Identities=12% Similarity=0.141 Sum_probs=124.6
Q ss_pred HHhhhcCcchhhhHHHHHHHHHhhCCCCCCcch----HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCC
Q 002876 372 VEENITKQEWRQREAATYAFGSILEGPSPEKLV----PLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLE 447 (872)
Q Consensus 372 l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~----~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
+.+.+.|.+|+.|..|+..+..+.......... ..+....+.+...+ .|.|..|...++.++..++........
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~~- 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSSL- 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---C-
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhhc-
Confidence 557889999999999999888876654211111 11233455677788 999999999999999999886542100
Q ss_pred CcccCccchHHHHHHHHHh-ccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHH
Q 002876 448 TPIINQGNCQQIISVLLQS-MKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRT 525 (872)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~-l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~ 525 (872)
.......+...+++.++.. +.+ .+.++..+..++..+++... ....+++.+...+.+. ++.++.
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----------~~~~~~e~l~~~l~~K---npkv~~ 157 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----------SITQSVELVIPFFEKK---LPKLIA 157 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----------SSHHHHHHHGGGGGCS---CHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----------cHHHHHHHHHHHHhcc---CHHHHH
Confidence 0001123456777877754 666 57888888888888876531 1234455556666543 566665
Q ss_pred HHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHh
Q 002876 526 AAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY 605 (872)
Q Consensus 526 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 605 (872)
.++..+..++..+| ..... ..+.
T Consensus 158 ~~l~~l~~~l~~fg------------------------------------------------------~~~~~---~k~~ 180 (278)
T 4ffb_C 158 AAANCVYELMAAFG------------------------------------------------------LTNVN---VQTF 180 (278)
T ss_dssp HHHHHHHHHHHHHT------------------------------------------------------TTTCC---HHHH
T ss_pred HHHHHHHHHHHHhC------------------------------------------------------CCcCC---chhH
Confidence 55555444444333 21000 2234
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhh
Q 002876 606 ADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDF 643 (872)
Q Consensus 606 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 643 (872)
++.+++.+..++.+++..||..|..+++.+...+|+..
T Consensus 181 l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 181 LPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 55666777788889999999999999999988888643
No 87
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.45 E-value=2.7e-06 Score=84.21 Aligned_cols=200 Identities=11% Similarity=0.029 Sum_probs=130.4
Q ss_pred HHHHHHH-HHhccccchhhHHHHHHHHHHHHhhhhhHhhhH-HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhcccc
Q 002876 609 MMGLFLR-VFAIRSATAHEEAMLAIGALAYATGQDFLKYMP-EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKIL 686 (872)
Q Consensus 609 i~~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 686 (872)
.++.++. +|++++..+++.|..+|+.++......-...+. ..+|.|+..+++..+..++..|+++|+.+++..+....
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4677788 899999999999999999998654322112222 57888888887544568999999999999876543332
Q ss_pred ccHH-HHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHH-HHHHHHHHHHhhccCCCCCCccHHHHHHHHH
Q 002876 687 PYCD-GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM-YAMPMLQSAAELSVHTSGVDDDMTEYTNSLR 764 (872)
Q Consensus 687 ~~~~-~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~-~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~ 764 (872)
.+.. ..++.|+.+++++ +..++..++++++.++....+.....++ .++|.|...+... | ..++
T Consensus 162 ~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~------d-------~~v~ 226 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE------H-------SPFH 226 (296)
T ss_dssp HHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC------C-------STHH
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC------C-------hhHH
Confidence 3332 5788899999887 7789999999999999874433333333 5888898888764 2 2577
Q ss_pred HHHHHHHHHHhhcccCCC-cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 002876 765 NGILEAFSGIFQGFKGSP-KTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLA 823 (872)
Q Consensus 765 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~ 823 (872)
+.++.++..++..-.... ......+.+..++....+.+.....+.++.+.+..++....
T Consensus 227 ~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 227 EHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 788888888887511000 00001122334443334444421224666666666655443
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.39 E-value=0.00023 Score=64.30 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=118.2
Q ss_pred chhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 129 WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
..+.+..+...+.+.++.++..++.++..+.+.. ++.+....++.+++.++..+. +.+..+-..|++|++.++.-.+
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCC
Confidence 3557788889999999999999999999999987 666656778999999999988 8999999999999999876432
Q ss_pred hhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 002876 209 ANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVC 288 (872)
Q Consensus 209 ~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~ 288 (872)
........+...+...+.++++-.+..+.+.++.+ + .....+.++.++.+.+.+.+.+++..|+.++..++
T Consensus 108 ---L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 108 ---MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp ---BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred ---CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-----cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 22233456788888888888888888898888876 1 22334677888888888888888888887776665
Q ss_pred H
Q 002876 289 D 289 (872)
Q Consensus 289 ~ 289 (872)
.
T Consensus 179 ~ 179 (265)
T 3b2a_A 179 N 179 (265)
T ss_dssp G
T ss_pred c
Confidence 3
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.38 E-value=7.6e-06 Score=82.12 Aligned_cols=313 Identities=12% Similarity=0.117 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhcCCC--C-hHHHHHHHHHHHHHHHhh-cCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccc
Q 002876 90 KAQIKSFILKTLSSP--A-HDARSTASQVVAKVAGIE-LPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD 165 (872)
Q Consensus 90 ~~~i~~~ll~~l~~~--~-~~vr~~~a~~l~~i~~~~-~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~ 165 (872)
+..+.+. .+.+.++ + .+.|.....++..+...+ +|......++..+.+++.+++...|+-+...+..+.+. ++
T Consensus 24 k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~ 100 (355)
T 3tjz_B 24 KSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AE 100 (355)
T ss_dssp HHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SS
T ss_pred HHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HH
Confidence 3334444 4678876 3 345556777776666542 12112467888899999999999998888888766554 22
Q ss_pred ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002876 166 AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVA 245 (872)
Q Consensus 166 ~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~ 245 (872)
. .--+...+.+-++ ++++-+|..|+++++.+.. + .....+.+.+.+.+.+.++.+|+.|+-+...
T Consensus 101 e-----~iLv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~--~------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 101 D-----VIIVTSSLTKDMT--GKEDSYRGPAVRALCQITD--S------TMLQAIERYMKQAIVDKVPSVSSSALVSSLH 165 (355)
T ss_dssp C-----GGGGHHHHHHHHH--SSCHHHHHHHHHHHHHHCC--T------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHhhcC--CCcHhHHHHHHHHHhcCCC--H------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1 2255677778888 8999999999999998642 1 1235677788888999999999999999999
Q ss_pred HHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHH
Q 002876 246 ISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLL 325 (872)
Q Consensus 246 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 325 (872)
+....|+.+.. +++.+...+.+.++-+...|+.++..+.+.. ...+..+++.+
T Consensus 166 L~~~~pe~v~~----~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-----------------------~~a~~kLv~~l 218 (355)
T 3tjz_B 166 LLKCSFDVVKR----WVNEAQEAASSDNIMVQYHALGLLYHVRKND-----------------------RLAVSKMISKF 218 (355)
T ss_dssp HTTTCHHHHHT----THHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-----------------------HHHHHHHHHHH
T ss_pred HhccCHHHHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-----------------------hHHHHHHHHHH
Confidence 88888876554 4444555667888888888887777665311 11222333322
Q ss_pred HHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCC---cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCc
Q 002876 326 LETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGD---DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK 402 (872)
Q Consensus 326 ~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~ 402 (872)
. .... ...|... ..+..+....++ ..-..+.+++...+.+.+..+...|+.++-.+.... ..
T Consensus 219 ~----~~~l-----~~~~~q~----~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~~- 283 (355)
T 3tjz_B 219 T----RHGL-----KSPFAYC----MMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-AK- 283 (355)
T ss_dssp H----SSCC-----SCHHHHH----HHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred h----cCCC-----cChHHHH----HHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-HH-
Confidence 2 1000 0124221 223322222211 223456777878888888888888887776654421 11
Q ss_pred chHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHH
Q 002876 403 LVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKA 477 (872)
Q Consensus 403 ~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a 477 (872)
.+...+..+...+ ..+++.+|..|+..+..+....|. .+...-..+.+.+.| +-.++..|
T Consensus 284 ---~~~~a~~~L~~fL-ss~d~niryvaLr~L~~l~~~~P~-----------~v~~~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 284 ---ELAPAVSVLQLFC-SSPKAALRYAAVRTLNKVAMKHPS-----------AVTACNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp -------CCCTHHHHH-HSSSSSSHHHHHHCC--------------------------------------------
T ss_pred ---HHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHCcH-----------HHHHHHHHHHHHccCCcHhHHHHH
Confidence 1233345555667 778889999999999988886542 222344455566666 34444433
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.36 E-value=5e-05 Score=68.46 Aligned_cols=217 Identities=13% Similarity=0.159 Sum_probs=155.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHh-hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 002876 218 DYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP-YIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILE 296 (872)
Q Consensus 218 ~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~ 296 (872)
+..+..+..++.+.|+.++..++.++..+++..+..+.. .++.+++.++....+.++.+...|++++..+.+..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v----- 106 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV----- 106 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----
Confidence 347888899999999999999999999999986555443 45678888888889999999999999999988632
Q ss_pred hcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhh
Q 002876 297 EYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENI 376 (872)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~ 376 (872)
...+..+..+...+...+...+ + -.+..+++.++.+ -.....+.+..++...+
T Consensus 107 ---------------pL~~~~y~Kl~~aL~dlik~~~------~---il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl 159 (265)
T 3b2a_A 107 ---------------PMGSKTFLKAAKTLVSLLESPD------D---MMRIETIDVLSKL---QPLEDSKLVRTYINELV 159 (265)
T ss_dssp ---------------CBCHHHHHHHHHHHHHHTTSCC------H---HHHHHHHHHHHHC---CBSCCCHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHhcCCC------c---hHHHHHHHHhCcC---CcccchHHHHHHHHHHH
Confidence 1224445556777777665311 1 3345566777666 33445678888998989
Q ss_pred cCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccch
Q 002876 377 TKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNC 456 (872)
Q Consensus 377 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (872)
.|.+.+++.+|+.++..++...... ..+..++..+-..+ +++++.+++-|+.++-.+...- ...+.+
T Consensus 160 ~Skd~~vK~agl~~L~eia~~S~D~---~i~~~I~~eI~elL-~~eD~~l~e~aLd~Le~ils~p---------i~~~~~ 226 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNSSADS---GHLTLILDEIPSLL-QNDNEFIVELALDVLEKALSFP---------LLENVK 226 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCSSC---CCGGGTTTTHHHHH-TCSCHHHHHHHHHHHHHHTTSC---------CCSCCH
T ss_pred hCCChhHHHHHHHHHHHhhcccCCH---HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCc---------ccHhHH
Confidence 9999999999999999998765322 22344555566677 8889999999999999888752 335555
Q ss_pred HHHHHHH--HHhcc---CChhHHHHHHH
Q 002876 457 QQIISVL--LQSMK---DVPNVAEKACG 479 (872)
Q Consensus 457 ~~il~~l--~~~l~---d~~~v~~~a~~ 479 (872)
+.+...+ .+.+- ..|.+|..|-.
T Consensus 227 ~~~~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 227 IELLKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp HHHHHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 5555433 23332 35778777753
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.30 E-value=2.9e-06 Score=86.49 Aligned_cols=229 Identities=12% Similarity=0.080 Sum_probs=144.1
Q ss_pred ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhH---HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHH
Q 002876 470 VPNVAEKACGALYFLAQGFEDAISPSSPLTPFF---QEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMV 546 (872)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l---~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 546 (872)
++.++..|+++|.+++..- ......+ ...++.|+..+.+. ++.++..+.++|..+...........+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~-------~~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~k~~i 166 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGD-------VANKATLCSMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTL 166 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSC-------HHHHHHHHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC-------HHHHHHHHHcCCcHHHHHHHHCCC---CHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 3678999999999997532 1112222 35688889988765 577899999999999765222222222
Q ss_pred --HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcccc--
Q 002876 547 --MQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA-- 622 (872)
Q Consensus 547 --~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-- 622 (872)
...+|.+++.+... .+. .++..+..+|..+..... . .+..+.. ....++.+.+++...+.
T Consensus 167 ~~~G~Ip~Lv~lL~~~--------~~~----~~~~~A~~aL~nLs~~~~-~--nk~~i~~-~~Gai~~Lv~lL~~~~~~~ 230 (354)
T 3nmw_A 167 REVGSVKALMECALEV--------KKE----STLKSVLSALWNLSAHCT-E--NKADICA-VDGALAFLVGTLTYRSQTN 230 (354)
T ss_dssp HHTTHHHHHHHHHHHC--------CCH----HHHHHHHHHHHHHHTTCH-H--HHHHHHH-STTHHHHHHHHTTCCCSSS
T ss_pred HHCCCHHHHHHHHhcC--------CCH----HHHHHHHHHHHHHHccCh-h--hhHHHHH-hcCcHHHHHHHhccCCCcc
Confidence 24577777765331 111 233345566665543110 0 0000100 13467788888887644
Q ss_pred --chhhHHHHHHHHHHHH--hhhhhHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccH-HHHHHH
Q 002876 623 --TAHEEAMLAIGALAYA--TGQDFLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYC-DGIMTQ 695 (872)
Q Consensus 623 --~~~~~a~~~l~~l~~~--~~~~~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~ 695 (872)
.+++.+..+|..++.. ..+.....+ ...+|.|+..|.+. +..++..|+++|..++...++...... ...++.
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~ 309 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM 309 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence 3788999999998863 122222222 24789999999865 458999999999998742221111111 246899
Q ss_pred HHHHccCCCCCCCCchhHHHHHHHHHHHhccc
Q 002876 696 LLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 696 l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
|++++.+. +..+++.+.+++..++...+..
T Consensus 310 Lv~LL~s~--~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 310 LKNLIHSK--HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHTTTTCS--SHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHhCC--CHHHHHHHHHHHHHHHcCCHHH
Confidence 99999887 6788999999999998765543
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.6e-05 Score=78.93 Aligned_cols=182 Identities=14% Similarity=0.232 Sum_probs=131.7
Q ss_pred ccchHhHHHHHHHHHHHHHcC-----Cc---chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCc-----chHHH
Q 002876 341 GAWNIAMAGGTCLGLVARTVG-----DD---IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEK-----LVPLV 407 (872)
Q Consensus 341 ~~~~~r~~a~~~l~~l~~~~~-----~~---~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~-----~~~~~ 407 (872)
..|..|..|.+.+..+....+ +. .+-.+.+.+...+.|.|..+...++.++..++....... ...+.
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~ 100 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLI 100 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH
Confidence 569999988888776655332 11 133345677788889999999999999999987654221 23345
Q ss_pred HHHHHHHHH-HhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 408 NIALNFMLT-ALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 408 ~~i~~~l~~-~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
..+++.++. ++ .|..+.+|..+..++..+++... ....+++.+...++. +|+++..++..|..++
T Consensus 101 ~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~------------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 101 STWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDT------------SITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSS------------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 667777765 48 89999999999999888877532 123567778888876 8999999999999999
Q ss_pred HhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccC
Q 002876 486 QGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDE 541 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~ 541 (872)
..++.. .....+.++.+++.+...+.+. ++.||..+..++..+.+..|..
T Consensus 168 ~~fg~~---~~~~k~~l~~i~~~l~k~l~d~---~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 168 AAFGLT---NVNVQTFLPELLKHVPQLAGHG---DRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHTTT---TCCHHHHHHHHGGGHHHHHTCS---SHHHHHHHHHHHHHHHTC----
T ss_pred HHhCCC---cCCchhHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHhCcc
Confidence 887532 2223456777888888888876 6889999999999999998854
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.15 E-value=4.7e-05 Score=77.59 Aligned_cols=255 Identities=14% Similarity=0.108 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHhc-------ChhHHHHHHHHHhhc---------CCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 18 TVRKQAEESLKQYQEQ-------NLPGFLLSLAGELVN---------DEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 18 ~~r~~a~~~L~~~~~~-------~~~~~~~~L~~~l~~---------~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
....+|...|..+... --.|.+..|..++.. ...++.+|..|+..|.|.-..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~-------- 118 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-------- 118 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHH--------
Confidence 4455677777766433 013577778777742 1124678999999999976432110
Q ss_pred ccCCChHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCC----CchhHHHHHHHhh-cCCChhHHHHHHHH
Q 002876 82 WLSLDSSV--KAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHK----QWPELIGALLSNI-HQLPPHTKQATLET 154 (872)
Q Consensus 82 ~~~l~~~~--~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~----~~~~l~~~l~~~l-~~~~~~~r~~al~~ 154 (872)
.... .....+.|+++|.++++.++..++.+|..++...-+.. .-...++.|++.+ .+.++..++.++.+
T Consensus 119 ----k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~a 194 (354)
T 3nmw_A 119 ----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 194 (354)
T ss_dssp ----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ----HHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0111 12346678999999999999999999999986410100 0135688888864 56678888888888
Q ss_pred HHHhhhhccccccchhh--HHHHHHHHHhcccCCCCC--HHHHHHHHHHHHHhHhhchhhccChhhH-----HHHHHHHH
Q 002876 155 LGYICEEVSSDAVEQDH--VNKILTAVVQGMNASESN--NDVRLAATRALYNALGFAQANFSNDMER-----DYIMRVVC 225 (872)
Q Consensus 155 l~~i~~~~~~~~l~~~~--~~~i~~~l~~~l~~~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~-----~~il~~l~ 225 (872)
+..++... ++.- ... ....++.+.+.+.+.+.. .+++..|..++.++..++... ...+ ...++.+.
T Consensus 195 L~nLs~~~-~~nk-~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~---~~~~~~i~~~g~i~~Lv 269 (354)
T 3nmw_A 195 LWNLSAHC-TENK-ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN---EDHRQILRENNCLQTLL 269 (354)
T ss_dssp HHHHHTTC-HHHH-HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHTTTHHHHHH
T ss_pred HHHHHccC-hhhh-HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHcCCHHHHH
Confidence 88887633 1110 111 245677788777732221 268888888888876421111 1111 23578888
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 002876 226 EATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 226 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (872)
.++.+++.++++.++.+|..+....++......+ ..++.+...+.+.++.++..|...+..++.
T Consensus 270 ~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 270 QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 8898999999999999999998544443333232 578888888888889999999988888875
No 94
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.13 E-value=0.00026 Score=67.41 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=131.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcChhHH-------HHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876 9 LLNAQSVDGTVRKQAEESLKQYQEQNLPGF-------LLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR 81 (872)
Q Consensus 9 l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~-------~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
...+.+.|-..|.+|-+.|.+.-.+++... +.++.-.+.+ .+..+-..+..+|...+..-- ..
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d--~N~~v~~~~L~~L~~l~~~l~--------~~ 121 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFE--TNPAALIKVLELCKVIVELIR--------DT 121 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTS--CCHHHHHHHHHHHHHHHHHHH--------HT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHH--------hc
Confidence 344566777888899999987666554442 3333323334 267788888877777665321 12
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002876 82 WLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEE 161 (872)
Q Consensus 82 ~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 161 (872)
-..+++.....+.+.|+.-++++...+|..+-+++..+.... | -..+++.+.+.+++.++..|..++..+..+++.
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~-~---~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-G---PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-C---HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC-C---HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 234677777788899999999999999999999998888764 3 255888899999999999999999999999988
Q ss_pred ccccccchhhHHHHH---HHHHhcccCCCCCHHHHHHHHHHHHHhHhhch
Q 002876 162 VSSDAVEQDHVNKIL---TAVVQGMNASESNNDVRLAATRALYNALGFAQ 208 (872)
Q Consensus 162 ~~~~~l~~~~~~~i~---~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (872)
.+.. . ...+ +.+.+.++ |.+..||.+|++|+..+....+
T Consensus 198 ~G~~-~-----~~~l~~~~~ia~ll~--D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 198 AGIS-P-----LKSLSVEKTVAPFVG--DKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HCSG-G-----GGGGCHHHHHGGGGG--CSSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC-c-----cccccchHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhh
Confidence 6322 1 2235 88888888 8999999999999998765443
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.06 E-value=5.6e-05 Score=75.90 Aligned_cols=288 Identities=11% Similarity=0.048 Sum_probs=147.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc
Q 002876 84 SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS 163 (872)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 163 (872)
.++...-..+.-.+++++.+++..+|+..=-.+..++.. + +.---..+.+.+-++++++.+|-.|+++++.|..
T Consensus 60 ~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~-~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--- 133 (355)
T 3tjz_B 60 HLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--A-EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--- 133 (355)
T ss_dssp CCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--S-SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---
T ss_pred CCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--H-HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---
Confidence 466666678888899999999999998877777666554 3 2333667889999999999999999999998865
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 002876 164 SDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECL 243 (872)
Q Consensus 164 ~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l 243 (872)
++ .++.+.+.+.+.+. |.++.||..|+-+...++...++.. ..+++.+.+++.+.++.+.-.|+..+
T Consensus 134 ~~-----m~~~l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe~v------~~~~~~l~~ll~d~n~~V~~~Al~lL 200 (355)
T 3tjz_B 134 ST-----MLQAIERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFDVV------KRWVNEAQEAASSDNIMVQYHALGLL 200 (355)
T ss_dssp TT-----THHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHHHH------HTTHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHHHH------HHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 32 35677788888888 8999999999999998776544432 34677778888999999998888888
Q ss_pred HHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHH
Q 002876 244 VAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVP 323 (872)
Q Consensus 244 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 323 (872)
..+.+..+.. +..+++.+... .-.++-.....++++..++... + ...-..+++
T Consensus 201 ~ei~~~d~~a----~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-----------~-----------~~~~~~~~~ 253 (355)
T 3tjz_B 201 YHVRKNDRLA----VSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-----------D-----------GSRDSPLFD 253 (355)
T ss_dssp HHHHTTCHHH----HHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------------------------
T ss_pred HHHHhhchHH----HHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-----------c-----------hhhHHHHHH
Confidence 8887654322 22333322110 0002222222233332332211 0 000011222
Q ss_pred HHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcc
Q 002876 324 LLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKL 403 (872)
Q Consensus 324 ~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~ 403 (872)
.+..++... .-.+-..|..++-.+.. .+...+......+...+.+++...|.+|+..+..+.... +..+
T Consensus 254 ~l~~~L~~~---------~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~-P~~v 322 (355)
T 3tjz_B 254 FIESCLRNK---------HEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH-PSAV 322 (355)
T ss_dssp ---CCCCCS---------SHHHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC------------
T ss_pred HHHHHHcCC---------ChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC-cHHH
Confidence 233222210 01232223333333322 122222222334445566777899999998888877654 2322
Q ss_pred hHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 002876 404 VPLVNIALNFMLTALMQDPNNHVKDTTAWT 433 (872)
Q Consensus 404 ~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~ 433 (872)
...-.-+..++ +|++..++--|...
T Consensus 323 ----~~~n~~ie~li-~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 323 ----TACNLDLENLV-TDANRSIATLAITT 347 (355)
T ss_dssp ------------------------------
T ss_pred ----HHHHHHHHHHc-cCCcHhHHHHHHHH
Confidence 33344566777 88887777655443
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.00 E-value=0.00012 Score=74.85 Aligned_cols=224 Identities=13% Similarity=0.140 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHH-HHHHHhcC----CC-ChHH
Q 002876 35 LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIK-SFILKTLS----SP-AHDA 108 (872)
Q Consensus 35 ~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~-~~ll~~l~----~~-~~~v 108 (872)
|-+++..|+.-|.++ ..++|+.|+..||..++.+... . ..+...+.+..-.+. -..++-+. |. ...|
T Consensus 172 PfqfcE~L~~DLFdp--~WEiRHGAALGLREILR~hG~G---A--GR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPV 244 (800)
T 3oc3_A 172 VLDFFEQISDNLLSY--EWYKRHGAFLAFAAMFSEIDNG---G--DIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPV 244 (800)
T ss_dssp GGGTTHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCC---------CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHH
T ss_pred HHHHHHHHHHHhcCc--chhhhhHHHHHHHHHHHHhccC---C--ceeccccHHHHHHHHHHHHhccccccccCeeeeeh
Confidence 334777777777754 7999999999999988765321 1 111222221111111 01111122 22 3789
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCC
Q 002876 109 RSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASES 188 (872)
Q Consensus 109 r~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~ 188 (872)
|.++|++++.+ .+. |. . ..++..++..+..+.+.+|++++..+.++ . +.+ .. ++.+++.++.++. |.
T Consensus 245 RETaAQtLGaL-~hL-p~-e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~----DLL-~~-Ld~Vv~aVL~GL~--D~ 311 (800)
T 3oc3_A 245 RDAAAYLLSRI-YPL-IG-P-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K----EFV-ED-KDGLCRKLVSLLS--SP 311 (800)
T ss_dssp HHHHHHHHHHH-TTT-SC-S-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G----GGC-CC-HHHHHHHHHHHTT--CS
T ss_pred HHHHHHHHHHH-HhC-Ch-h-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H----HHH-HH-HHHHHHHHHhhcC--Cc
Confidence 99999999999 666 42 3 56667777667778899999999999999 2 233 12 8999999999999 88
Q ss_pred CHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHH
Q 002876 189 NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPE--VKIRQAAFECLVAISSTYYEKLAPYIQDIFNITA 266 (872)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (872)
+.+||..|..++..++ .....+.++..+...+.+-+ ......++..|..++..-. . ....+.++|-++
T Consensus 312 DDDVRAVAAetLiPIA--------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-~-a~~dp~LVPRL~ 381 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFP--------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-E-LSIPPERLKDIF 381 (800)
T ss_dssp SHHHHHHHHHHHTTSC--------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-T-CCCCSGGGGGTG
T ss_pred ccHHHHHHHHHhhhhc--------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-c-cccChHHHHHHH
Confidence 9999999999998865 11234678888887765322 2234556777777776432 1 111236677777
Q ss_pred HHHhcCChhhHHHHHHHHHHHH
Q 002876 267 KAVREDEEPVALQAIEFWSSVC 288 (872)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~ 288 (872)
..+.+.-.+||..+++.+..+.
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC
T ss_pred hhhcCCcHHHHHHHHHHHHHHH
Confidence 7778888899999888776554
No 97
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.98 E-value=4.2e-06 Score=72.05 Aligned_cols=121 Identities=13% Similarity=0.188 Sum_probs=80.6
Q ss_pred chhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccC
Q 002876 364 IVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHG 443 (872)
Q Consensus 364 ~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
..+.-.+.+...+++++|.+|..++.+++.+... . ++.+...+ +|+++.||..++++++++...
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~-~~~L~~~L-~d~~~~vR~~A~~aL~~~~~~--- 72 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------A-FEPLLESL-SNEDWRIRGAAAWIIGNFQDE--- 72 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST-----------T-HHHHHHGG-GCSCHHHHHHHHHHHGGGCSH---
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------H-HHHHHHHH-cCCCHHHHHHHHHHHHhcCCH---
Confidence 3345566677788889999999888776654321 1 36677888 999999999999999876531
Q ss_pred CCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhh
Q 002876 444 STLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESR 522 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~ 522 (872)
..++.+...+.| ++.||..|+++|+.+.. +..++.|...+.+. ++.
T Consensus 73 --------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~---~~~ 119 (131)
T 1te4_A 73 --------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETG---TGF 119 (131)
T ss_dssp --------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSC---CTH
T ss_pred --------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCC---CHH
Confidence 456667777766 78999999999998731 34566777777654 577
Q ss_pred hHHHHHHHHHH
Q 002876 523 LRTAAYETLNE 533 (872)
Q Consensus 523 v~~~~~~~l~~ 533 (872)
+|..+..+|+.
T Consensus 120 vr~~A~~aL~~ 130 (131)
T 1te4_A 120 ARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHh
Confidence 88888877653
No 98
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.98 E-value=0.003 Score=67.61 Aligned_cols=324 Identities=10% Similarity=0.086 Sum_probs=189.1
Q ss_pred CchhHHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhh
Q 002876 128 QWPELIGALLSNIHQLP-PHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGF 206 (872)
Q Consensus 128 ~~~~l~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (872)
.=.+.++.|.+.+.+.. ..-|+.|+..|..+.+.+ +... ...=++.++..++.+..|.++-..++++|..++..
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~V----g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEV----GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHH----HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHh----hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 33567788888777653 567999999999998776 4433 22334555555554346888888999999876542
Q ss_pred chhhc---------cChhhH--H------HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHH---HHHHHHH
Q 002876 207 AQANF---------SNDMER--D------YIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQ---DIFNITA 266 (872)
Q Consensus 207 ~~~~~---------~~~~~~--~------~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~---~l~~~~~ 266 (872)
..+.- ..-..+ + .-+..++.++..++..+|..++++|..++...++.....+- .=++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 22110 000001 1 23677888889999999999999999999998876555442 3466677
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHh
Q 002876 267 KAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIA 346 (872)
Q Consensus 267 ~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (872)
..+.+..+.+|..++-++..++....++. +. -.++..++.+++.+..... -.-.
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQ----------------kl--VAFEnaFe~Lf~Ii~~Eg~--------~~Gg 226 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQ----------------KI--VAFENAFERLLDIITEEGN--------SDGG 226 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHH----------------HH--HHHTTHHHHHHHHHHHHTG--------GGSH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHH----------------HH--HHHhccHHHHHHHHHhcCC--------Cccc
Confidence 77888889999999999999886543322 11 1122334555555442110 0112
Q ss_pred HHHHHHHHHHHHHcC-----------CcchhchHHHHHhhhcCcchhhhH-----HHHHHHHHhhCCCCCC-cc---hHH
Q 002876 347 MAGGTCLGLVARTVG-----------DDIVPLVMPFVEENITKQEWRQRE-----AATYAFGSILEGPSPE-KL---VPL 406 (872)
Q Consensus 347 ~~a~~~l~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~r~-----aal~~l~~l~~~~~~~-~~---~~~ 406 (872)
....+|+..+..... ...+|.+.+++...-....|..+. +++.++..++....+. .. ...
T Consensus 227 ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~ 306 (651)
T 3grl_A 227 IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKA 306 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 334566655554331 123455555543211123475433 2345555565543210 01 011
Q ss_pred H--HHHHHHHHHHhccCC--cHHHHHHHHHHHHHhhhhccC-------CCCCCcccCccchHHHHHHHHHhccC--ChhH
Q 002876 407 V--NIALNFMLTALMQDP--NNHVKDTTAWTLGRMFEFLHG-------STLETPIINQGNCQQIISVLLQSMKD--VPNV 473 (872)
Q Consensus 407 ~--~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v 473 (872)
+ ..+++.++..+ ..+ ...+|..|+.+++.++...+. ... |. ..-.+.++..++..+.+ ...+
T Consensus 307 ~~~~g~l~~Ll~ll-~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v--p~--~~~~p~li~lL~~~~~~~~~~~l 381 (651)
T 3grl_A 307 MFQCGLLQQLCTIL-MATGVPADILTETINTVSEVIRGCQVNQDYFASVNA--PS--NPPRPAIVVLLMSMVNERQPFVL 381 (651)
T ss_dssp HHHTTHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE--SS--SSCEEHHHHHHHHHTCTTSCHHH
T ss_pred HHHCCCHHHHHHHH-ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC--CC--CCCcChHHHHHHHHhcccccHHH
Confidence 1 23455666665 433 578999999999988774321 000 00 00123455556666654 3688
Q ss_pred HHHHHHHHHHHHHh
Q 002876 474 AEKACGALYFLAQG 487 (872)
Q Consensus 474 ~~~a~~al~~l~~~ 487 (872)
|.+|+.++..++..
T Consensus 382 R~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 382 RCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988754
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.97 E-value=0.00049 Score=70.61 Aligned_cols=252 Identities=12% Similarity=0.051 Sum_probs=158.4
Q ss_pred CCch-hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccc-----cccchhhHHHHHH-HHHhcccC---CCCCHHHHHHH
Q 002876 127 KQWP-ELIGALLSNIHQLPPHTKQATLETLGYICEEVSS-----DAVEQDHVNKILT-AVVQGMNA---SESNNDVRLAA 196 (872)
Q Consensus 127 ~~~~-~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~-----~~l~~~~~~~i~~-~l~~~l~~---~~~~~~vr~~a 196 (872)
..|| ++.+.|...+-++.+.+|++|...|..+++.-.. +.....-.-.++- ..+..+.+ +..-..||..+
T Consensus 169 ~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 169 IENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp CCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHH
Confidence 3564 4889999999999999999999999999887521 1221111112211 12222221 12245799999
Q ss_pred HHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhh
Q 002876 197 TRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPV 276 (872)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 276 (872)
.++++.+ .++++.+ .++..+......+.|++|..++-.+.-+ .+.+.. ++.+++.++..+.|.+++|
T Consensus 249 AQtLGaL-~hLp~e~-------~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDV 315 (800)
T 3oc3_A 249 AYLLSRI-YPLIGPN-------DIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDI 315 (800)
T ss_dssp HHHHHHH-TTTSCSC-------CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHH-HhCChhH-------HHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHH
Confidence 9999998 6665542 2333333455778999999998888766 222222 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHH
Q 002876 277 ALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLV 356 (872)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l 356 (872)
+..|.+.|.-++. ...++.++..+.+.+.+. +| - . .......+.|..+
T Consensus 316 RAVAAetLiPIA~-------------------------p~~l~~LL~iLWd~L~~L-DD----L-S-ASTgSVMdLLAkL 363 (800)
T 3oc3_A 316 KLLSAELLCHFPI-------------------------TDSLDLVLEKCWKNIESE-EL----I-S-VSKTSNLSLLTKI 363 (800)
T ss_dssp HHHHHHHHTTSCC-------------------------SSTHHHHHHHHHHHHHTC-CS----C-C-TTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcc-------------------------hhhHHHHHHHHHHHhhhh-cc----c-c-hhhHHHHHHHHHH
Confidence 9998887765551 234667788888888754 11 1 1 1122234556665
Q ss_pred HHHcCC-cchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHH-HhccCCcHHHHHHHHHHH
Q 002876 357 ARTVGD-DIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT-ALMQDPNNHVKDTTAWTL 434 (872)
Q Consensus 357 ~~~~~~-~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~-~l~~d~~~~vr~~a~~~l 434 (872)
+..-.. ...|.++|-+-..+.++-..+|.+++.++.++. . ..++..+.+ .+ -+++..++..+..+.
T Consensus 364 ~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~----~~~LRLIFQNIL-LE~neeIl~lS~~VW 431 (800)
T 3oc3_A 364 YRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-------E----ESIDFLVAEVVL-IEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------C----HHHHHHHHHHHH-HCSCHHHHHHHHHHH
T ss_pred HcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------h----hhHHHHHHHHHH-hCCcHHHHHHHHHHH
Confidence 554321 112334444444445555789999998886665 1 223333333 34 678888998887766
Q ss_pred H
Q 002876 435 G 435 (872)
Q Consensus 435 ~ 435 (872)
.
T Consensus 432 k 432 (800)
T 3oc3_A 432 K 432 (800)
T ss_dssp H
T ss_pred H
Confidence 4
No 100
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.96 E-value=0.00044 Score=80.09 Aligned_cols=410 Identities=10% Similarity=0.039 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh--cCC----CCchhHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhc
Q 002876 90 KAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE--LPH----KQWPELIGALLSNIHQ-LPPHTKQATLETLGYICEEV 162 (872)
Q Consensus 90 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~--~~~----~~~~~l~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~ 162 (872)
...+++.+-.++.+.+..-...+|++++-+.+.. ++. ..|.-+.|.|...+.+ -+++....=..++..++...
T Consensus 506 l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~ 585 (997)
T 1vsy_5 506 MSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVV 585 (997)
T ss_dssp GGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCC
Confidence 3445666666777777777889999999887643 111 1355677777777773 45544444445666666666
Q ss_pred cccccchhhHHHHHHHHHhc---ccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHH
Q 002876 163 SSDAVEQDHVNKILTAVVQG---MNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAA 239 (872)
Q Consensus 163 ~~~~l~~~~~~~i~~~l~~~---l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~ 239 (872)
+|..+ ..++..+... +..+..+.-.....+..+..++....-.+.. .+.++..+. +..+-..+|..+
T Consensus 586 DprR~-----~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~---~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 586 DLRRS-----KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD---VGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp CGGGC-----HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC---CHHHHHHCC--SCCSCHHHHHHH
T ss_pred Chhhh-----HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc---HHHHHHHHH--hCCChHHHHHHH
Confidence 55544 3555555221 1100112111122233333332211111111 134454444 677889999999
Q ss_pred HHHHHHHHHHhHHhhHhhHHHHHHHHHHH---HhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc-------
Q 002876 240 FECLVAISSTYYEKLAPYIQDIFNITAKA---VREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIP------- 309 (872)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 309 (872)
...|..+.......-.+....+++..... +.-..........+.+..+.+..............+ ...+
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~-~~~~s~y~~~~ 734 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQ-QFIKTDYFYRT 734 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCST-TTTTSHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCcc-ccchHHHHHHH
Confidence 99998888765210011223333221110 000000000001111111111100000000000000 0000
Q ss_pred --------------hHhHHHhhhhh-HHHHHHHHHhcccCCcccCCccchHhHH-HHHHHHHHHHHc-CCcchhchHHHH
Q 002876 310 --------------CFYFIKHALPV-LVPLLLETLLKQEEDQDQDEGAWNIAMA-GGTCLGLVARTV-GDDIVPLVMPFV 372 (872)
Q Consensus 310 --------------~~~~~~~~l~~-l~~~l~~~l~~~~~d~~~~~~~~~~r~~-a~~~l~~l~~~~-~~~~~~~l~~~l 372 (872)
....+.++++. ++|.++.. .+..|+ -+.... |..++..++... +...++.++..+
T Consensus 735 kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l----~~~~d~----~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l 806 (997)
T 1vsy_5 735 STIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGL----VKHKDV----CALASLDPVRLYAGLGYMPIRKNHVAAIVDYV 806 (997)
T ss_dssp HHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTT----SSCSHH----HHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHH----hhcCcH----HHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 00112222222 33333321 111111 123333 445666665543 444556666666
Q ss_pred Hhhhc-CcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCc-HHHHHHHHHHHHHhhhhc-cCCCCCCc
Q 002876 373 EENIT-KQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPN-NHVKDTTAWTLGRMFEFL-HGSTLETP 449 (872)
Q Consensus 373 ~~~~~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~-~~vr~~a~~~l~~l~~~~-~~~~~~~~ 449 (872)
.+... +++| .|.+++..+..+.-.-...........+...+..+| .|+. ..||+.|..+|+-+.... +
T Consensus 807 ~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L-~D~q~~EVRe~Aa~tLsgll~c~~~------- 877 (997)
T 1vsy_5 807 CSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNL-YNEQFVEVRVRAASILSDIVHNWKE------- 877 (997)
T ss_dssp SCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTT-TCSSCHHHHHHHHHHHHHHHHSCCS-------
T ss_pred HHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHcCCc-------
Confidence 66555 5789 999998776554321000111122357788899999 9999 999999999999887654 2
Q ss_pred ccCccchHHHHHHHHHhccC-------------ChhHHHHHHHHHHHHHHhcccCCCCCCCC--chhHHHHHHHHHHhhc
Q 002876 450 IINQGNCQQIISVLLQSMKD-------------VPNVAEKACGALYFLAQGFEDAISPSSPL--TPFFQEIVQALLTVTH 514 (872)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d-------------~~~v~~~a~~al~~l~~~~~~~~~~~~~l--~~~l~~i~~~l~~~l~ 514 (872)
......++..+.+.+.. ....+..|.-+|+.++..+ +..+ .+++|+++..|.....
T Consensus 878 ---~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~------Py~vP~P~w~P~~l~~La~~~~ 948 (997)
T 1vsy_5 878 ---EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF------PYVFPLPPWIPKNLSNLSSWAR 948 (997)
T ss_dssp ---HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC------SCCSSCCTHHHHHHHHHHTTSS
T ss_pred ---hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC------CCCCCCCcccHHHHHHHHHHhC
Confidence 01111233333322211 1145677888899998876 3444 6799999999888777
Q ss_pred cCCchhhhhHHHHHHHHHHHHHcccc
Q 002876 515 REDAGESRLRTAAYETLNEVVRCSTD 540 (872)
Q Consensus 515 ~~~~~~~~v~~~~~~~l~~l~~~~~~ 540 (872)
++. + ++..+=++++.+-+...+
T Consensus 949 ~~~---~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 949 TSG---M-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp SCS---S-HHHHTHHHHHHHHHHTST
T ss_pred CCC---c-hHHHHHHHHHHHHhccch
Confidence 643 3 676777777776665543
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.78 E-value=0.00099 Score=75.22 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=52.4
Q ss_pred chHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH-HHHH-HHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 002876 367 LVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV-NIAL-NFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 367 ~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~~i~-~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
.++|.+. .+.++++..|..|+.+++.+++.. ....-.+ ..++ +.+...+ .|++..||.+|+++|++++...
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL-~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETL-TDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhhc
Confidence 3556664 478899999999999999999753 2211122 2344 4556678 9999999999999999998754
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.59 E-value=0.00016 Score=61.94 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=77.6
Q ss_pred chHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhccCC
Q 002876 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDP 422 (872)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~ 422 (872)
+.+|..|..+|..+ +.. . ++.+.+.+.+++|.+|..++.+++.+.. +..++.+...+ +|+
T Consensus 26 ~~vR~~A~~~L~~~----~~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L-~d~ 85 (131)
T 1te4_A 26 KWVRRDVSTALSRM----GDE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLL-EDD 85 (131)
T ss_dssp CCSSSSCCSSTTSC----SST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHHHh----Cch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH-cCC
Confidence 45565555554432 222 2 3667778889999999999999987752 34577788888 999
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHH
Q 002876 423 NNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYF 483 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~ 483 (872)
++.||..++++++.+... ..++.|...++| ++.||..|+.+|..
T Consensus 86 ~~~VR~~A~~aL~~~~~~-----------------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 86 SGFVRSGAARSLEQIGGE-----------------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp CTHHHHHHHHHHHHHCSH-----------------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHhCcH-----------------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999999999987531 567778888876 68999999888764
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.58 E-value=0.055 Score=60.98 Aligned_cols=155 Identities=10% Similarity=0.097 Sum_probs=84.6
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHH-HHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhh
Q 002876 132 LIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKIL-TAVVQGMNASESNNDVRLAATRALYNALGFAQAN 210 (872)
Q Consensus 132 l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~-~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (872)
++|. ++.++++++..|..|+.++..+++..+...+ -....++ +.+...+. |++.+||..|..+|.++....+..
T Consensus 36 i~Pl-l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l--~~~~~~v~~ll~~lL~--D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 36 ILPV-LKDLKSPDAKSRTTAAGAIANIVQDAKCRKL--LLREQVVHIVLTETLT--DNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp THHH-HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHH--HHHTTHHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHH-HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHH--HHHcCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHhhcCch
Confidence 3443 4558889999999999999999874311111 1223344 44555566 899999999999999876432111
Q ss_pred ccChhhHHHHHHHHHHhhc--------------CCCH-------HHHHHHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHH
Q 002876 211 FSNDMERDYIMRVVCEATL--------------SPEV-------KIRQAAFECLVAISSTYYEKLAPYIQ-DIFNITAKA 268 (872)
Q Consensus 211 ~~~~~~~~~il~~l~~~~~--------------~~~~-------~~r~~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~ 268 (872)
......+..+++.+..++. .... ++...++.+|..++....+.+..... ..++.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 1111111223333322211 0111 12233455566666554443322211 334444444
Q ss_pred Hh---cCChhhHHHHHHHHHHHHHHH
Q 002876 269 VR---EDEEPVALQAIEFWSSVCDEE 291 (872)
Q Consensus 269 ~~---~~~~~v~~~a~~~~~~l~~~~ 291 (872)
+. ....+++..+++++..+++..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 32 234578999999999888743
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.97 E-value=0.026 Score=51.82 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHH-hhcCCChhHHHHHHHHHHHhhhhccccccc
Q 002876 90 KAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLS-NIHQLPPHTKQATLETLGYICEEVSSDAVE 168 (872)
Q Consensus 90 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~-~l~~~~~~~r~~al~~l~~i~~~~~~~~l~ 168 (872)
.+.+......+..++...+|-.++.+++.. . .-.+.++.+.. ...++...+|+.+...++.++....|+.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 345555666667777789999999987766 2 23788888887 6667788999999999998886433442
Q ss_pred hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 002876 169 QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~ 248 (872)
.++.+..... |++..||..|+.....+... + .+ ....+.+++.+..+..|++.-+|+++...|..+.+
T Consensus 140 ------~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~-~-~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 140 ------ALPIIDEWLK--SSNLHTRRAATEGLRIWTNR-P-YF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ------THHHHHHHHH--CSSHHHHHHHHHHTCSGGGS-T-TT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHhc--CCCHHHHHHHHHhhHHHhcc-c-hh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 3345556666 89999999999887654321 1 11 22346788999999999999999999999999999
Q ss_pred HhHHhhHhhH
Q 002876 249 TYYEKLAPYI 258 (872)
Q Consensus 249 ~~~~~~~~~~ 258 (872)
.+|+.+..++
T Consensus 208 ~~Pd~V~~~~ 217 (240)
T 3l9t_A 208 KFPDLVKIEL 217 (240)
T ss_dssp TCHHHHHHHH
T ss_pred hCHHHHHHHH
Confidence 9988765443
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.95 E-value=0.43 Score=48.79 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCC
Q 002876 94 KSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLP 144 (872)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~ 144 (872)
.+.++.++.+++..||.++...|..+++. ..-+.+.+.|.|++++.+
T Consensus 67 i~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 67 INAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccc
Confidence 33455555555555555555555554432 123444444555555444
No 106
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.78 E-value=0.00021 Score=67.75 Aligned_cols=186 Identities=17% Similarity=0.192 Sum_probs=117.9
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHH
Q 002876 99 KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTA 178 (872)
Q Consensus 99 ~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~ 178 (872)
..+.++++.||..++..+ + + ..+..++.++++.+|..+...+ +. +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l--------~----~---~~l~~L~~D~~~~VR~~aA~~L--------~~-----------~~ 102 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS--------P----V---EALTPLIRDSDEVVRRAVAYRL--------PR-----------EQ 102 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS--------C----G---GGGGGGTTCSSHHHHHHHHTTS--------CS-----------GG
T ss_pred HHhcCCCHHHHHHHHHhC--------C----H---HHHHHHccCcCHHHHHHHHHHC--------CH-----------HH
Confidence 446788999999998853 2 1 1355667888999998888542 21 12
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhH
Q 002876 179 VVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYI 258 (872)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 258 (872)
+...++ |+++.||..+...+ +. ..+..+++|+++.+|..+...+ + +
T Consensus 103 L~~ll~--D~d~~VR~~aA~~l-------~~------------~~L~~L~~D~d~~VR~~aA~~l-------~----~-- 148 (244)
T 1lrv_A 103 LSALMF--DEDREVRITVADRL-------PL------------EQLEQMAADRDYLVRAYVVQRI-------P----P-- 148 (244)
T ss_dssp GGGTTT--CSCHHHHHHHHHHS-------CT------------GGGGGGTTCSSHHHHHHHHHHS-------C----G--
T ss_pred HHHHHc--CCCHHHHHHHHHhC-------CH------------HHHHHHHcCCCHHHHHHHHHhc-------C----H--
Confidence 444556 89999999988742 10 1233457889999999987732 1 1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCccc
Q 002876 259 QDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQ 338 (872)
Q Consensus 259 ~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 338 (872)
+.+....+|++..||..+... +. . .++. .+. .
T Consensus 149 ----~~l~~l~~D~d~~VR~~aa~~---l~--------------------------~----~ll~----~ll---~---- 180 (244)
T 1lrv_A 149 ----GRLFRFMRDEDRQVRKLVAKR---LP--------------------------E----ESLG----LMT---Q---- 180 (244)
T ss_dssp ----GGGGGTTTCSCHHHHHHHHHH---SC--------------------------G----GGGG----GST---T----
T ss_pred ----HHHHHHHcCCCHHHHHHHHHc---CC--------------------------H----HHHH----HHH---c----
Confidence 122234568888888776642 10 0 0111 111 1
Q ss_pred CCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHh
Q 002876 339 DEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418 (872)
Q Consensus 339 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l 418 (872)
+.+|.+|..+...+ +. +.+...+.|++|.+|.++...++ . ..+..|
T Consensus 181 -D~d~~VR~aaa~~l-------~~-------~~L~~Ll~D~d~~VR~~aa~~l~------------------~-~~L~~L 226 (244)
T 1lrv_A 181 -DPEPEVRRIVASRL-------RG-------DDLLELLHDPDWTVRLAAVEHAS------------------L-EALREL 226 (244)
T ss_dssp -CSSHHHHHHHHHHC-------CG-------GGGGGGGGCSSHHHHHHHHHHSC------------------H-HHHHHC
T ss_pred -CCCHHHHHHHHHhC-------CH-------HHHHHHHcCCCHHHHHHHHHcCC------------------H-HHHHHc
Confidence 23489998776542 21 34556678999999999886642 1 234558
Q ss_pred ccCCcHHHHHHHHHHHH
Q 002876 419 MQDPNNHVKDTTAWTLG 435 (872)
Q Consensus 419 ~~d~~~~vr~~a~~~l~ 435 (872)
.|++|.||.++...||
T Consensus 227 -~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 227 -DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CCCCHHHHHHHHCCC-
T ss_pred -cCCCHHHHHHHHHHhC
Confidence 9999999999876554
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.76 E-value=0.02 Score=52.54 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcc
Q 002876 258 IQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQD 337 (872)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 337 (872)
.+.++++.....+++.+++|..|+.++... . ....+++.+...+..
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---------------------------~~~~~L~~ir~~va~------ 114 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---------------------------KDKEILIFMRDEVSK------ 114 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T---------------------------TSHHHHHHHHHTGGG------
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c---------------------------CcHHHHHHHHHHhCC------
Confidence 456777777777888889999998865443 1 113345555544432
Q ss_pred cCCccchHhHHHHHHHHHHHH-HcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 002876 338 QDEGAWNIAMAGGTCLGLVAR-TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLT 416 (872)
Q Consensus 338 ~~~~~~~~r~~a~~~l~~l~~-~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 416 (872)
++.|.+|..+..+++.++. ..++. +++.+.....|++..+|.+|.....-.+... .+......+++.+..
T Consensus 115 --D~~WrVre~lA~a~~~~~~~~~pe~----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~---~~k~dp~~ll~iL~~ 185 (240)
T 3l9t_A 115 --DNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP---YFKENPNEAIRRIAD 185 (240)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHCTTT----THHHHHHHHHCSSHHHHHHHHHHTCSGGGST---TTTTCHHHHHHHHHT
T ss_pred --CCCccHHHHHHHHHHHHHHhcCHHH----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc---hhhcCHHHHHHHHHH
Confidence 3559999999999998886 44443 4566778888899888888876554333221 123334567788888
Q ss_pred HhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 417 ALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 417 ~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
.. .|++..||.+..+.|..+++..|
T Consensus 186 L~-~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 186 LK-EDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp TT-TCSCHHHHHHHHHHHHHHHTTCH
T ss_pred hc-CChHHHHHHHHHHHHHHHhhhCH
Confidence 88 99999999999999999998764
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.68 E-value=0.95 Score=48.74 Aligned_cols=337 Identities=9% Similarity=0.077 Sum_probs=177.4
Q ss_pred hhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCC--ChHHHHHH
Q 002876 35 LPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSP--AHDARSTA 112 (872)
Q Consensus 35 ~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~ 112 (872)
..+.+..|++.+.+ ..-.+=|+.|...||.+-+.+ +.+.-..-...++..|... |..+-+.+
T Consensus 19 ~~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk~y---------------~~~Vg~~~l~~li~~L~~d~~D~e~v~~~ 82 (651)
T 3grl_A 19 EAETIQKLCDRVAS-STLLDDRRNAVRALKSLSKKY---------------RLEVGIQAMEHLIHVLQTDRSDSEIIGYA 82 (651)
T ss_dssp HHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTTTT---------------TTHHHHHTHHHHHHHHHSCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHh---------------HHHhhhhhHHHHHHHHhcccccHHHHHHH
Confidence 45677778888887 567889999999999976532 2233333345677777654 44444444
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHH
Q 002876 113 SQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDV 192 (872)
Q Consensus 113 a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~v 192 (872)
-+++..+...+ ..++- . ..+.....+.++..-..+... ..-++.++..+. ..+..+
T Consensus 83 LetL~~l~~~~----~~~~~-~------~~~~~~~~~~~~~~~d~f~~~-----------~~~i~~Ll~lL~--~~df~v 138 (651)
T 3grl_A 83 LDTLYNIISND----EEEEV-E------ENSTRQSEDLGSQFTEIFIKQ-----------QENVTLLLSLLE--EFDFHV 138 (651)
T ss_dssp HHHHHHHHCCC-------------------------CHHHHHHHHHHHS-----------THHHHHHHHHTT--CCCHHH
T ss_pred HHHHHHHhCCC----Ccccc-c------ccccccchHHHHHHHHHHHcC-----------CccHHHHHHHhc--CccHHH
Confidence 44444443321 11110 0 000011111222222222111 233456666676 789999
Q ss_pred HHHHHHHHHHhHhhchhhccChh-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhh--HHHHHHHHHHHH
Q 002876 193 RLAATRALYNALGFAQANFSNDM-ERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPY--IQDIFNITAKAV 269 (872)
Q Consensus 193 r~~al~~l~~~~~~~~~~~~~~~-~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~--~~~l~~~~~~~~ 269 (872)
|..++++|..++..-+....... ..+.=++.+...+.++.+.+|..++..|..+.+..++. ... ++..++.++..+
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i-QklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI-QKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH-HHHHHHhccHHHHHHHH
Confidence 99999999998754332111000 00123567788888999999999999999999876642 111 123444455555
Q ss_pred hcC----ChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHH--hhhhhHHHHHHHHHhcccCCcccCCccc
Q 002876 270 RED----EEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIK--HALPVLVPLLLETLLKQEEDQDQDEGAW 343 (872)
Q Consensus 270 ~~~----~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~~~l~~~~~d~~~~~~~~ 343 (872)
..+ ...+...++.++..+....+. ...++. ..++.+.+. +.. + +++..|
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~s----------------NQ~~FrEt~~i~~L~~L----L~~-~----~~~~~W 272 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNS----------------NQNFFKEGSYIQRMKPW----FEV-G----DENSGW 272 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHH----------------HHHHHHHTTCGGGGGGG----GCC-C----SCSSCC
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHH----------------HHHHHHHcCCHHHHHHH----hCC-C----cccccc
Confidence 432 235667777777777643211 112222 223333332 221 1 123468
Q ss_pred hHhHHHHH---HHHHHHHHc-CCcc-----------h-hchHHHHHhhhcCc--chhhhHHHHHHHHHhhCCCCCCcchH
Q 002876 344 NIAMAGGT---CLGLVARTV-GDDI-----------V-PLVMPFVEENITKQ--EWRQREAATYAFGSILEGPSPEKLVP 405 (872)
Q Consensus 344 ~~r~~a~~---~l~~l~~~~-~~~~-----------~-~~l~~~l~~~~~~~--~~~~r~aal~~l~~l~~~~~~~~~~~ 405 (872)
...+. .. ++..+.-.. +... + ..+++.+.+.+.++ ...+|..|+.+++.++.+.. ....
T Consensus 273 ~~Qk~-~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~ 349 (651)
T 3grl_A 273 SAQKV-TNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQD 349 (651)
T ss_dssp CHHHH-HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHH
Confidence 64432 22 222222111 2110 1 11333344444333 35678889999999887652 1111
Q ss_pred HH-----------HHHHHHHHHHhccC-CcHHHHHHHHHHHHHhhhhc
Q 002876 406 LV-----------NIALNFMLTALMQD-PNNHVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 406 ~~-----------~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~l~~~~ 441 (872)
++ +.++..+...+ ++ ....+|.+++.|+..+....
T Consensus 350 ~fa~~~vp~~~~~p~li~lL~~~~-~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 350 YFASVNAPSNPPRPAIVVLLMSMV-NERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp HHHHCEESSSSCEEHHHHHHHHHT-CTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHhhccCCCCCCcChHHHHHHHHh-cccccHHHHHHHHHHHHHHHhCC
Confidence 11 23444455555 44 45789999999999888654
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.59 E-value=0.012 Score=55.22 Aligned_cols=179 Identities=13% Similarity=0.022 Sum_probs=108.2
Q ss_pred chHHHHHhhhcCcch--hhhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 002876 367 LVMPFVEENITKQEW--RQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 367 ~l~~~l~~~~~~~~~--~~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
..+|.+.+.+.+++. .++..+..++..++.... . ....+ ...+|.++..| .++++.++..|+++|.+++...+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~-~-~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKS-E-ARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH-H-HHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc-H-HHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCH
Confidence 345666777777776 677777778877775431 1 12222 34679999999 99999999999999999987432
Q ss_pred CCCCCCcccCccchHHHHHHHHHhcc-C-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhc-----c
Q 002876 443 GSTLETPIINQGNCQQIISVLLQSMK-D-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTH-----R 515 (872)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~-----~ 515 (872)
. ....-.-...+|.|++.|. . +..++..|+.+|.++...... +. .....-++.|...+. .
T Consensus 85 ~------nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~----k~---~i~~~~i~~Lv~ll~~p~sG~ 151 (233)
T 3tt9_A 85 D------NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL----KN---LMITEALLTLTENIIIPFSGW 151 (233)
T ss_dssp H------HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG----HH---HHHHHHHHHHCCCCCHHHHCC
T ss_pred H------HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh----HH---HHHhccHHHHHHHHhccccCC
Confidence 1 0001111246788888886 3 578999999899998653210 11 112223444443321 0
Q ss_pred C--------CchhhhhHHHHHHHHHHHHHccccCcHHHH--HHHHHHHHHHHHHHH
Q 002876 516 E--------DAGESRLRTAAYETLNEVVRCSTDETAPMV--MQLVPLIMMELHQTL 561 (872)
Q Consensus 516 ~--------~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~ 561 (872)
. ...+..++..+..+|..+....++.-.... ..+++.++..+...+
T Consensus 152 ~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~ 207 (233)
T 3tt9_A 152 PEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI 207 (233)
T ss_dssp CGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhh
Confidence 0 011457888888888888764322212111 246677777776654
No 110
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=96.28 E-value=0.27 Score=49.60 Aligned_cols=231 Identities=12% Similarity=0.131 Sum_probs=128.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHH-HhccC--ChhHHHHHHHHHHHHHH
Q 002876 410 ALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLL-QSMKD--VPNVAEKACGALYFLAQ 486 (872)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~-~~l~d--~~~v~~~a~~al~~l~~ 486 (872)
.+-.++..+ ..++++-|.....++.++...+.. ...++...+..++ +.+.+ ...-.......++.++.
T Consensus 130 Fi~~Ll~lf-dSeDprER~~LktiLhrIY~kf~~--------~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIin 200 (403)
T 3fga_B 130 FVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLG--------LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIIN 200 (403)
T ss_dssp HHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCChHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence 455677788 899999999998888888776531 2334444333322 22222 11111234566777777
Q ss_pred hcccCCCCCCCCc-hhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhc
Q 002876 487 GFEDAISPSSPLT-PFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQK 565 (872)
Q Consensus 487 ~~~~~~~~~~~l~-~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 565 (872)
++. .-+. .|..-+...++..-.... -.........|+..++..-+.- ...++..++..|-..
T Consensus 201 Gfa------~PLkeehk~fl~~vLlPLHk~~~--~~~y~~qL~ycv~qf~eKDp~L----~~~vi~~LLk~WP~t----- 263 (403)
T 3fga_B 201 GFA------LPLKEEHKIFLLKVLLPLHKVKS--LSVYHPQLAYCVVQFLEKDSTL----TEPVVMALLKYWPKT----- 263 (403)
T ss_dssp HCC------SSCCHHHHHHHHHTTTGGGGSTT--GGGTHHHHHHHHHHHHHHCGGG----HHHHHHHHHHTCCSS-----
T ss_pred ccC------CCchHHHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHHHhCchh----HHHHHHHHHHhCCCC-----
Confidence 652 2232 233333444444433322 1223335556666666555432 233444555555221
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHHH--HHHHhhhhh
Q 002876 566 LSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGA--LAYATGQDF 643 (872)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~--l~~~~~~~~ 643 (872)
...++. ..+.-+..++..+++. .+.+...+++..+..++++++..|-+.|+..+.+ +.....+..
T Consensus 264 --ns~Kev------lFL~Ele~iLe~~~~~-----~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~ 330 (403)
T 3fga_B 264 --HSPKEV------MFLNELEEILDVIEPS-----EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA 330 (403)
T ss_dssp --CHHHHH------HHHHHHHHHHTTCCHH-----HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH
T ss_pred --CcHHHH------HHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhH
Confidence 111221 1444555555554433 2778888999999999999988888888877643 333334444
Q ss_pred HhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHH
Q 002876 644 LKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCR 679 (872)
Q Consensus 644 ~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 679 (872)
...++.++|.+.+...++=+..++..+..++..+..
T Consensus 331 ~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 331 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 445566666676655554455777777777666543
No 111
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=96.25 E-value=0.64 Score=45.26 Aligned_cols=165 Identities=8% Similarity=0.083 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhh-HHHHHHHHHHHHhhhhhHhhhHHHHHHHH
Q 002876 577 IQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHE-EAMLAIGALAYATGQDFLKYMPEFYKYVE 655 (872)
Q Consensus 577 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 655 (872)
++..++..+...+.+. ++...+...+.+++++.++.=.+...+..|+ +++.+++.++..++..+.++++.++..+.
T Consensus 45 vKkeiLkLiet~i~~~---~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRS---NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTC---SCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344555555555433 2233344566777777666655555555554 68889999999999999999999888766
Q ss_pred hh----hcC--CChhhHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhc
Q 002876 656 MG----LQN--FEDYQVCAITVGVVGDLCRALEDKILP----YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 725 (872)
Q Consensus 656 ~~----l~~--~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 725 (872)
.. ++. .+-|+.|..-+.++..+...+-..+.. ....+++.++..++.+ .+++....+.++-.+.....
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~--~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT--MRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHHh
Confidence 43 322 234789999999999999886543332 3456777888888877 77888889988888887764
Q ss_pred c--ch-----HHhHHHHHHHHHHHHhhc
Q 002876 726 E--NF-----EKYLMYAMPMLQSAAELS 746 (872)
Q Consensus 726 ~--~~-----~~~l~~il~~l~~~l~~~ 746 (872)
. .+ ..|.-.++.-+...+.+.
T Consensus 200 ~~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 200 QEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2 22 234444444455555443
No 112
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=96.24 E-value=0.32 Score=50.07 Aligned_cols=261 Identities=12% Similarity=0.130 Sum_probs=138.9
Q ss_pred cchhhhHHHHHHHHHhhCC--CCCCcchHHH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccc
Q 002876 379 QEWRQREAATYAFGSILEG--PSPEKLVPLV-NIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGN 455 (872)
Q Consensus 379 ~~~~~r~aal~~l~~l~~~--~~~~~~~~~~-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 455 (872)
+.|..-...+..|..+.+. ..+.....++ ..++-.++..+ ..++++-|......+.++...+. ....+
T Consensus 129 ~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~--------~~R~~ 199 (449)
T 2npp_B 129 AAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFL--------GLRAY 199 (449)
T ss_dssp TTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHSCT--------TTHHH
T ss_pred ccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 4466555555555555543 2222334444 34666777888 89999999999999988887653 13344
Q ss_pred hHHHHHHH-HHhccC--ChhHHHHHHHHHHHHHHhcccCCCCCCCCch-hHHHHHHHHHHhhccCCchhhhhHHHHHHHH
Q 002876 456 CQQIISVL-LQSMKD--VPNVAEKACGALYFLAQGFEDAISPSSPLTP-FFQEIVQALLTVTHREDAGESRLRTAAYETL 531 (872)
Q Consensus 456 ~~~il~~l-~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~-~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l 531 (872)
+...+..+ .+.+.+ ...--......++.++.++. --+.+ |-.-+...++....... -.........|+
T Consensus 200 Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa------~PLKeehk~fl~~vLlPLhk~~~--l~~y~~qL~ycv 271 (449)
T 2npp_B 200 IRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA------LPLKEEHKIFLLKVLLPLHKVKS--LSVYHPQLAYCV 271 (449)
T ss_dssp HHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCC------SSCCHHHHHHHHHTTGGGGGSSC--GGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccC------CCCcHHHHHHHHHHHHHHHccch--hHHhHHHHHHHH
Confidence 44444332 333322 11111234556666666552 12333 33233334444433322 122233455666
Q ss_pred HHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHH
Q 002876 532 NEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMG 611 (872)
Q Consensus 532 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~ 611 (872)
..++...+. ....++..++..|-.. ...++. ..++-+..++..+++. .+.....+++.
T Consensus 272 ~qf~eKDp~----L~~~vi~~LLk~WP~t-------ns~Kev------lFL~eleeile~~~~~-----ef~~i~~~lF~ 329 (449)
T 2npp_B 272 VQFLEKDST----LTEPVVMALLKYWPKT-------HSPKEV------MFLNELEEILDVIEPS-----EFVKIMEPLFR 329 (449)
T ss_dssp HHHHHHCGG----GHHHHHHHHHHTCCSS-------CHHHHH------HHHHHHHHHHTTCCHH-----HHHHHHHHHHH
T ss_pred HHHHhcCcH----hHHHHHHHHHHhCCCC-------CchHHH------HHHHHHHHHHHhCCHH-----HHHHHHHHHHH
Confidence 666655443 2334445555555221 111221 1344455555544433 27778889999
Q ss_pred HHHHHHhccccchhhHHHHHHHH--HHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002876 612 LFLRVFAIRSATAHEEAMLAIGA--LAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLC 678 (872)
Q Consensus 612 ~l~~~l~~~~~~~~~~a~~~l~~--l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 678 (872)
.+..++++++..|-+.|+..+.+ +...+.+.....++.++|.+.+..+++=+..++..+..++..+.
T Consensus 330 ~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 330 QLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp HHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999988888888876643 33333333222334444444444343334468888877776543
No 113
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.22 E-value=2.3 Score=48.06 Aligned_cols=335 Identities=10% Similarity=0.101 Sum_probs=167.0
Q ss_pred ccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhcc--CCchhhhhHHHHHH
Q 002876 453 QGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHR--EDAGESRLRTAAYE 529 (872)
Q Consensus 453 ~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~--~~~~~~~v~~~~~~ 529 (872)
..+...++|.+..++-. +..+...+..++..++.-. +....-.+|.+++.+...+.. -. ++.-...++.
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~------P~~~~lVlP~vL~r~y~sLe~~~l~--e~Hrl~~aL~ 405 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD------PSNAYLIYDKILIDLYDTLADQFIN--SRHRIISSLK 405 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC------CTTHHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC------CCccceehHHHHHHHHHHhcccccc--chhHHHHHHH
Confidence 45666777777777765 6788888899999998642 211112567777777777765 33 3333346777
Q ss_pred HHHHHHHcccc--CcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hhHhh
Q 002876 530 TLNEVVRCSTD--ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQT----KYVFM 603 (872)
Q Consensus 530 ~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~----~~~~~ 603 (872)
++..+++..-. ....++..++..++.. .+.+|.... ..++..+..++..++-.+-+ .-.+.
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~Lpg---------ID~ND~~KT----~~tl~fi~~i~s~ipi~d~s~~~~~~~~~ 472 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSK---------LDMNDTNLT----SNLINGIVSIAAFIPIQDLTGEDDYISFE 472 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHT---------CCSSCHHHH----HHHHHHHHHHHHTSCBCCCCCCCTTCCHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhcc---------CCcccHHHH----HHHHHHHHHHHHhccccccCCcchhhhhh
Confidence 77776665543 2333433333333322 235555432 24667777777766533111 00011
Q ss_pred HhHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 002876 604 QYADQMMGLFLRVFAIRSATA---HEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~~~---~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 680 (872)
....+.++.-...++..+... .+... ..+........|..++..++..++..+++..+..+......++..+...
T Consensus 473 ~~~~~~~~~~~~~l~~~~~~~~~~~d~~~--~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~ 550 (799)
T 1vsy_4 473 SDTLPLVQQHFYHIKCGESSKTFRVDDEL--LNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQES 550 (799)
T ss_dssp HHTHHHHHHHHHHHHTTCCSSSCCCCTTH--HHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhccccccccccccHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 111112222222333321110 00000 0222333345566666667777776666533323333333344444444
Q ss_pred HhccccccHHHHHHHHHHHccCCCCCCCCchh---HHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCC-CC----
Q 002876 681 LEDKILPYCDGIMTQLLKDLSSNQLHRSVKPP---IFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTS-GV---- 752 (872)
Q Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~---~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~-~~---- 752 (872)
+.++ ..+.++..+.+.+.+.......+.. +.--++.++...++.+..+++.+...+...+.+.++.. ..
T Consensus 551 lS~~---if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~ 627 (799)
T 1vsy_4 551 MDDK---IFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQ 627 (799)
T ss_dssp BCHH---HHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCC
T ss_pred CCHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4332 3456677777766665433333332 11115666667666556666666655554443332210 11
Q ss_pred -CccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 002876 753 -DDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTL 826 (872)
Q Consensus 753 -d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~ 826 (872)
.+...-| -+..+.+++.. .+..+-+|.+++++++..++.+ ..+..+-..+..++..+...+
T Consensus 628 ~~D~~L~w-------~l~iL~~~v~~-----~g~~lL~y~deL~~il~~~~~~-~k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 628 QRDVKLVL-------YLTALNDVLRN-----CHESLLEYSDELITFMKYLYDN-VTNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp TTTHHHHH-------HHHHHHHHHTT-----TGGGGGTTHHHHHHHHHHHHHS-CCCHHHHHHHTTHHHHHHHHH
T ss_pred cchHHHHH-------HHHHHHHHHhc-----CcHHHHccHHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHHHHh
Confidence 1111112 12334444443 5567889999999998877753 455554454555554444433
No 114
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.21 E-value=0.026 Score=52.99 Aligned_cols=177 Identities=9% Similarity=-0.004 Sum_probs=104.1
Q ss_pred hHhHHHHHHHHHHHHHcC---Ccch-hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH--HHHHHHHHHH
Q 002876 344 NIAMAGGTCLGLVARTVG---DDIV-PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV--NIALNFMLTA 417 (872)
Q Consensus 344 ~~r~~a~~~l~~l~~~~~---~~~~-~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~ 417 (872)
.++..|..++..++...+ ..+. ...+|.+.+.+.+++..+++.|+.+|..++.... + -...+ ...+|.++..
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~-~-nk~~I~~~GaI~~Lv~l 102 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN-D-NKLEVAELNGVPRLLQV 102 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-H-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-H-HHHHHHHcCCHHHHHHH
Confidence 344556667777765321 1111 2345777777888888999999999999987531 2 12222 4578888888
Q ss_pred hcc-CCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhcc-----------------CChhHHHHHHH
Q 002876 418 LMQ-DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMK-----------------DVPNVAEKACG 479 (872)
Q Consensus 418 l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-----------------d~~~v~~~a~~ 479 (872)
+ . .+++.+++.++.+|-.++..-. .........++.|...+. .++.++.+|..
T Consensus 103 L-~~~~~~~~~e~a~~aL~nLS~~~~--------~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~ 173 (233)
T 3tt9_A 103 L-KQTRDLETKKQITGLLWNLSSNDK--------LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTG 173 (233)
T ss_dssp H-HHCCCHHHHHHHHHHHHHHHTSGG--------GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHH
T ss_pred H-ccCCCHHHHHHHHHHHHHHHcChh--------hHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHH
Confidence 8 6 5789999999888888876432 123334455666655331 13589999999
Q ss_pred HHHHHHHhcccCCCCCCCCch---hHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHH
Q 002876 480 ALYFLAQGFEDAISPSSPLTP---FFQEIVQALLTVTHREDAGESRLRTAAYETLNEVV 535 (872)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~---~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~ 535 (872)
+|.++...-++. ...+.. -++.++..+-....+.+. +.+.++.++.+|..|.
T Consensus 174 ~L~nLss~~~~~---R~~~r~~~Gli~~Lv~~l~~~~~~~~~-~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 174 CLRNMSSAGADG---RKAMRRCDGLIDSLVHYVRGTIADYQP-DDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHTTSCHHH---HHHHHTSTTHHHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCHHH---HHHHHHCCCcHHHHHHHHHhhhhcccc-hhHHHHHHHHHHHHHH
Confidence 999996431110 111111 223333333333332222 3456667777776654
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.88 E-value=1.2 Score=42.08 Aligned_cols=186 Identities=13% Similarity=0.093 Sum_probs=122.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-Ch---hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHH
Q 002876 2 SAEVTQILLNAQSVDGTVRKQAEESLKQYQEQ-NL---PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFE 77 (872)
Q Consensus 2 ~~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~-~~---~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 77 (872)
+.++..+|..+.....+.+-..-++.+++.-+ +| |.|+..++.+..+ .+.++|.+.+-++......
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~--~~~~vrk~~~~Fi~e~~~~-------- 83 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHD--SNMEVRKQVVAFVEQVCKV-------- 83 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGC--SCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHHH--------
Confidence 45788999998775446777667777774333 33 5677777775443 5799999999998776642
Q ss_pred hhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhc------CC------CCch---hHHHHHHHhhcC
Q 002876 78 LVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIEL------PH------KQWP---ELIGALLSNIHQ 142 (872)
Q Consensus 78 ~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~------~~------~~~~---~l~~~l~~~l~~ 142 (872)
.++......+.|..++.++++.|.+.+.++.+.++...+ +. ..|. .+-..++..+.+
T Consensus 84 --------k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s 155 (257)
T 3gs3_A 84 --------KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDN 155 (257)
T ss_dssp --------CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred --------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 245556677788888998899888888888877765432 21 2464 456678888888
Q ss_pred CChhHHHHHHHHHHHhhhhccc---c------ccc----------------hhhHHHHHHHHHhcccCCCCCHHHHHHHH
Q 002876 143 LPPHTKQATLETLGYICEEVSS---D------AVE----------------QDHVNKILTAVVQGMNASESNNDVRLAAT 197 (872)
Q Consensus 143 ~~~~~r~~al~~l~~i~~~~~~---~------~l~----------------~~~~~~i~~~l~~~l~~~~~~~~vr~~al 197 (872)
.+..+|..+++.+..++-..++ + .++ ......++..++..+.+.+.+...-.+.+
T Consensus 156 ~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~l 235 (257)
T 3gs3_A 156 ENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACT 235 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHH
Confidence 8899999999999876632110 0 110 13445566666665553334554555666
Q ss_pred HHHHHhHh
Q 002876 198 RALYNALG 205 (872)
Q Consensus 198 ~~l~~~~~ 205 (872)
.+|..++.
T Consensus 236 nsL~~Iak 243 (257)
T 3gs3_A 236 SSLCTIAK 243 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 116
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=95.88 E-value=0.79 Score=44.65 Aligned_cols=167 Identities=12% Similarity=0.172 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Q 002876 522 RLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYV 601 (872)
Q Consensus 522 ~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 601 (872)
.+++..+..+.+.++..++ .......++|++++....-.+... ++.++. ..+.+++.++.+++..
T Consensus 44 ~vKkeiLkLiet~i~~~~d-~~~v~~~~ippLl~~VL~DY~~~v--p~aRep------eVL~l~~tii~kl~~~------ 108 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQRNV--PAAREP------EVLSTMAIIVNKLGGH------ 108 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSC-HHHHHHHTHHHHHHHHHHHHHTSC--GGGCCT------HHHHHHHHHHHHHGGG------
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHhCC--cccccH------HHHHHHHHHHHHHHHH------
Confidence 3566777777887876643 233456667777665333222111 121111 2677888999999876
Q ss_pred hhHhHHHHHHHHHHH----Hhc---cccchhhHHHHHHHHHHHHhhhhhHh----hhHHHHHHHHhhhcCCChhhHHHHH
Q 002876 602 FMQYADQMMGLFLRV----FAI---RSATAHEEAMLAIGALAYATGQDFLK----YMPEFYKYVEMGLQNFEDYQVCAIT 670 (872)
Q Consensus 602 ~~~~~~~i~~~l~~~----l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~~~l~~~~~~~v~~~a 670 (872)
+.++.+.|++.++++ .+. ..++.|..-+..+.++...+-..+.. .+..++..+..+.+.+ ..++...+
T Consensus 109 i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~-~r~V~e~g 187 (321)
T 1w9c_A 109 ITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT-MRNVADTG 187 (321)
T ss_dssp GGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS-SHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC-CchHHHHH
Confidence 888888888887654 343 35678888999999998876554443 3445777777778754 55888888
Q ss_pred HHHHHHHHHHHhc--c-----ccccHHHHHHHHHHHccCCC
Q 002876 671 VGVVGDLCRALED--K-----ILPYCDGIMTQLLKDLSSNQ 704 (872)
Q Consensus 671 ~~~l~~l~~~~~~--~-----~~~~~~~i~~~l~~~l~~~~ 704 (872)
+.++-.+..++.. + ...|.-.++..++..+.|+.
T Consensus 188 L~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 188 LQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 8888888887752 1 12244556666677776664
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.61 E-value=1.3 Score=41.97 Aligned_cols=164 Identities=12% Similarity=0.155 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc---
Q 002876 86 DSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEV--- 162 (872)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~--- 162 (872)
+++...++.+.++....+++..+|+..+..+...+... + ..-+..++.|..++.++++.+.+.++.+...++...
T Consensus 47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~-~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-V-ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888877888999999999999998654 3 366788899999999888888888888777665542
Q ss_pred ---ccc---ccchh---hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh----------hccC----------
Q 002876 163 ---SSD---AVEQD---HVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA----------NFSN---------- 213 (872)
Q Consensus 163 ---~~~---~l~~~---~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~----------~~~~---------- 213 (872)
.+. .. .. .+..+-..+++.+. ..+..+|..+++.+..++..... .+.-
T Consensus 125 i~~~~~~~~~~-~~~W~~m~~lK~~Il~~~~--s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l 201 (257)
T 3gs3_A 125 LCSLMEPGDSA-EQAWNILSLIKAQILDMID--NENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLF 201 (257)
T ss_dssp HTTSSSCCHHH-HHHHHHHHHHHHHHHHGGG--SSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSS
T ss_pred HhcCCCCcchH-HHHHHHHHHHHHHHHHHHc--cCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcC
Confidence 011 01 22 23444456666666 67899999999999988742211 0100
Q ss_pred -----hhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhHHhh
Q 002876 214 -----DMERDYIMRVVCEATLSP--EVKIRQAAFECLVAISSTYYEKL 254 (872)
Q Consensus 214 -----~~~~~~il~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~ 254 (872)
+.+...++..+...+.++ +...-.+++.+|..+++..|.++
T Consensus 202 ~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 202 RREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence 011234666666665544 34456788999999999887654
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.54 E-value=2.6 Score=43.29 Aligned_cols=276 Identities=9% Similarity=0.093 Sum_probs=151.0
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhH
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLA 255 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 255 (872)
+..++.+.+ ++...+..|.+.+..++..+|+. .+.-++.++.++.|.+..+|..|++.|-.+++.
T Consensus 31 y~~Il~~~k---g~~k~K~LaaQ~I~kffk~FP~l------~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------ 95 (507)
T 3u0r_A 31 YQVILDGVK---GGTKEKRLAAQFIPKFFKHFPEL------ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ 95 (507)
T ss_dssp HHHHHHGGG---SCHHHHHHHHHHHHHHGGGCGGG------HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------
Confidence 344455544 57999999999999987766653 256678888899999999999999999998875
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCC
Q 002876 256 PYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEED 335 (872)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d 335 (872)
.++..+...+.+.++.++..-....-..+.++....+ +..+ ..++..+...+
T Consensus 96 ~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp----------------------k~tl----~~lf~~i~~~~-- 147 (507)
T 3u0r_A 96 ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDA----------------------KGTL----GGLFSQILQGE-- 147 (507)
T ss_dssp TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH----------------------HHHH----HHHHHHHHHSC--
T ss_pred hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh----------------------HHHH----HHHHHHHcccc--
Confidence 4567778888888887665433333334444443211 2222 22333222211
Q ss_pred cccCCccchHhHHHHHHHHHHHHHc---CCcch-----hchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHH
Q 002876 336 QDQDEGAWNIAMAGGTCLGLVARTV---GDDIV-----PLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLV 407 (872)
Q Consensus 336 ~~~~~~~~~~r~~a~~~l~~l~~~~---~~~~~-----~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~ 407 (872)
+ .+|. .+|.-+...+ +...+ ..+...+.+.+.+-.-..- -+++..+...-..+.. .-.
T Consensus 148 ----e---~~Re---r~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF---~L~m~lL~~lkl~~t~-~g~ 213 (507)
T 3u0r_A 148 ----D---IVRE---RAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEF---VLFMKILSGLKSLQTV-SGR 213 (507)
T ss_dssp ----H---HHHH---HHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHH---HHHHHHHHTSGGGSSH-HHH
T ss_pred ----h---HHHH---HHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHH---HHHHHHHHhcccccCc-hHH
Confidence 1 4554 3444444432 33222 2233334444443221111 1222222111111111 223
Q ss_pred HHHHHHHHHHhc-----cCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-Ch-----hHHHH
Q 002876 408 NIALNFMLTALM-----QDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VP-----NVAEK 476 (872)
Q Consensus 408 ~~i~~~l~~~l~-----~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~-----~v~~~ 476 (872)
..+++.+..... +-.++..-.....|+......+.. ......++.-+...++..+++ .. ..+..
T Consensus 214 qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~-----~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~ 288 (507)
T 3u0r_A 214 QQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK-----NVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLE 288 (507)
T ss_dssp HHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT-----TBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHH
T ss_pred HHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc-----CCChHHHHHHHHHhhccchhhccccccchHHHHH
Confidence 455555555420 112444555555566555555432 223345666666666666654 11 35667
Q ss_pred HHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCC
Q 002876 477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRED 517 (872)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~ 517 (872)
-..++..++..++. .+.....++.+++.|...+..+.
T Consensus 289 LLK~lAE~s~~~~~----~e~a~~~l~~iy~~L~~ymP~~p 325 (507)
T 3u0r_A 289 VLKLLAEMSSFCGD----MEKLETNLRKLFDKLLEYMPLPP 325 (507)
T ss_dssp HHHHHHHHHTTCCC----CTTHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHccCCCc----cchHHHHHHHHHHHHHHHCCCCc
Confidence 77777777766532 34455688889999988876544
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.85 E-value=0.29 Score=43.77 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCC--hhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCC
Q 002876 627 EAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFE--DYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQ 704 (872)
Q Consensus 627 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 704 (872)
..+....++...-.-.+.||+.+++|.++.++-... ...+|..|..+++.+++..+......-+.++..+.+.+.++.
T Consensus 65 ~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~ 144 (196)
T 4atg_A 65 TCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN 144 (196)
T ss_dssp HHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC
Confidence 334444444444344688999999999998864322 116999999999999999987665566789999999998874
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.70 E-value=4.1 Score=41.08 Aligned_cols=201 Identities=11% Similarity=0.104 Sum_probs=127.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhcCh---hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHh
Q 002876 3 AEVTQILLNAQSVDGTVRKQAEESLKQY-QEQNL---PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFEL 78 (872)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~-~~~~~---~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 78 (872)
..+..+|..+.....+.+-..-++++++ ...+| ++|+..+++...+ .+..+|.+.+-++.....+
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d--~~~~vRk~~a~FieEa~~~--------- 93 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQAD--KSIEVRKFVIGFIEEACKR--------- 93 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGC--SCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHHH---------
Confidence 4577888887553234666666667764 22333 5788877776664 3799999999998776542
Q ss_pred hhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhc------CC------CCch---hHHHHHHHhhcCC
Q 002876 79 VQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIEL------PH------KQWP---ELIGALLSNIHQL 143 (872)
Q Consensus 79 ~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~------~~------~~~~---~l~~~l~~~l~~~ 143 (872)
..+....+.+.|..++.++++.|.+.+.++.+.++...+ +. ..|. .+-..++..+.+.
T Consensus 94 -------~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~ 166 (386)
T 3o2t_A 94 -------DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD 166 (386)
T ss_dssp -------CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS
T ss_pred -------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC
Confidence 234455667778888888888888888887777764321 21 2464 4566788888888
Q ss_pred ChhHHHHHHHHHHHhhhhcc-----cc-------ccc----------------hhhHHHHHHHHHhcccCCCCCHHHHHH
Q 002876 144 PPHTKQATLETLGYICEEVS-----SD-------AVE----------------QDHVNKILTAVVQGMNASESNNDVRLA 195 (872)
Q Consensus 144 ~~~~r~~al~~l~~i~~~~~-----~~-------~l~----------------~~~~~~i~~~l~~~l~~~~~~~~vr~~ 195 (872)
+..+|..+++.+..++-..+ ++ .++ ......++..++..+.....++..-.+
T Consensus 167 n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a 246 (386)
T 3o2t_A 167 NDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTT 246 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHH
Confidence 89999999999887663221 11 110 134567778888877743445555566
Q ss_pred HHHHHHHhHhhchhhccChhhHHHHHHHHHHh
Q 002876 196 ATRALYNALGFAQANFSNDMERDYIMRVVCEA 227 (872)
Q Consensus 196 al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~ 227 (872)
.+.+|..++..=+. ..+.|++.+..+
T Consensus 247 ~lnsLa~Iak~RP~------~~~rIl~aL~~l 272 (386)
T 3o2t_A 247 ALGSLANIARQRPM------FMSEVIQAYETL 272 (386)
T ss_dssp HHHHHHHHHHHSGG------GHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHH------HHHHHHHHHHhh
Confidence 77777776643222 124566665543
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.35 E-value=2.7 Score=37.56 Aligned_cols=87 Identities=9% Similarity=0.195 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Q 002876 521 SRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600 (872)
Q Consensus 521 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 600 (872)
...-...+.....++.+-.-...+|+.+++|.++.-+-.. . .+.. .+|..+...+..++.+.+..
T Consensus 60 l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k---~-l~~~------~LRd~AA~lL~~I~~~~~~~----- 124 (196)
T 4atg_A 60 AEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGK---S-IVDD------DVRKMSADIVKYIYDTYSRS----- 124 (196)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCT---T-CCCH------HHHHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhc---c-cCHH------HHHHHHHHHHHHHHHHhCcc-----
Confidence 3444577888888888888888999999999988765321 1 1111 47778999999999999876
Q ss_pred HhhHhHHHHHHHHHHHHhccccc
Q 002876 601 VFMQYADQMMGLFLRVFAIRSAT 623 (872)
Q Consensus 601 ~~~~~~~~i~~~l~~~l~~~~~~ 623 (872)
....-+.++..+.+.+.+++.+
T Consensus 125 -y~~L~~RI~~tl~k~l~dp~~~ 146 (196)
T 4atg_A 125 -YKTLAPRVLKTLKGVWMDPNRS 146 (196)
T ss_dssp -STTHHHHHHHHHHHHHTCTTSC
T ss_pred -CchHHHHHHHHHHHHHcCCCCC
Confidence 4455677888888888776543
No 122
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.24 E-value=0.0073 Score=57.20 Aligned_cols=202 Identities=13% Similarity=0.119 Sum_probs=124.4
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcC
Q 002876 23 AEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS 102 (872)
Q Consensus 23 a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~ 102 (872)
-...+..|...+ |..+. ..+. +.++.+|..|+..+ +.+ .+..++.
T Consensus 40 ~~~ri~~~~~~~-p~l~~---~ll~--d~~~~VR~~AA~~l----------------------~~~-------~l~~L~~ 84 (244)
T 1lrv_A 40 SGRQIDRFFRNN-PHLAV---QYLA--DPFWERRAIAVRYS----------------------PVE-------ALTPLIR 84 (244)
T ss_dssp CHHHHHHHHHHC-GGGGG---GGTT--CSSHHHHHHHHTTS----------------------CGG-------GGGGGTT
T ss_pred cHHHHHHHHcCC-HHHHH---HHhc--CCCHHHHHHHHHhC----------------------CHH-------HHHHHcc
Confidence 345555555443 33322 2233 45799999997632 111 2566778
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhc
Q 002876 103 SPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQG 182 (872)
Q Consensus 103 ~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~ 182 (872)
|+++.||..++..+ + . +.+...++++++.+|..+..-+ .++ .+...
T Consensus 85 D~~~~VR~~aA~~L--------~--~-----~~L~~ll~D~d~~VR~~aA~~l-------~~~------------~L~~L 130 (244)
T 1lrv_A 85 DSDEVVRRAVAYRL--------P--R-----EQLSALMFDEDREVRITVADRL-------PLE------------QLEQM 130 (244)
T ss_dssp CSSHHHHHHHHTTS--------C--S-----GGGGGTTTCSCHHHHHHHHHHS-------CTG------------GGGGG
T ss_pred CcCHHHHHHHHHHC--------C--H-----HHHHHHHcCCCHHHHHHHHHhC-------CHH------------HHHHH
Confidence 99999999999642 2 1 2456678888999998887742 111 12233
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHhhHHHHH
Q 002876 183 MNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIF 262 (872)
Q Consensus 183 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~ 262 (872)
++ |+++.||..+...+ +. +.+..+++|+++.||..+...+. .
T Consensus 131 ~~--D~d~~VR~~aA~~l-------~~------------~~l~~l~~D~d~~VR~~aa~~l~-------~---------- 172 (244)
T 1lrv_A 131 AA--DRDYLVRAYVVQRI-------PP------------GRLFRFMRDEDRQVRKLVAKRLP-------E---------- 172 (244)
T ss_dssp TT--CSSHHHHHHHHHHS-------CG------------GGGGGTTTCSCHHHHHHHHHHSC-------G----------
T ss_pred Hc--CCCHHHHHHHHHhc-------CH------------HHHHHHHcCCCHHHHHHHHHcCC-------H----------
Confidence 45 89999999988732 10 12234678899999999877511 1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCcc
Q 002876 263 NITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGA 342 (872)
Q Consensus 263 ~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~ 342 (872)
+.+...+.|++..||..+...+ . . +.+...+. +..
T Consensus 173 ~ll~~ll~D~d~~VR~aaa~~l---~--------------------------~-------~~L~~Ll~---------D~d 207 (244)
T 1lrv_A 173 ESLGLMTQDPEPEVRRIVASRL---R--------------------------G-------DDLLELLH---------DPD 207 (244)
T ss_dssp GGGGGSTTCSSHHHHHHHHHHC---C--------------------------G-------GGGGGGGG---------CSS
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C--------------------------H-------HHHHHHHc---------CCC
Confidence 1222455788889998777531 1 0 01111111 244
Q ss_pred chHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHH
Q 002876 343 WNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAF 391 (872)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l 391 (872)
|.+|..+...++ .+.+... .|++|.+|+++...+
T Consensus 208 ~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 208 WTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 999988777643 2555555 889999999987544
No 123
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=93.93 E-value=10 Score=42.73 Aligned_cols=361 Identities=11% Similarity=0.118 Sum_probs=188.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHh--------------hcCCCCchhHHHHHHHhhcCCChhH-
Q 002876 84 SLDSSVKAQIKSFILKTLSSPA-HDARSTASQVVAKVAGI--------------ELPHKQWPELIGALLSNIHQLPPHT- 147 (872)
Q Consensus 84 ~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~a~~l~~i~~~--------------~~~~~~~~~l~~~l~~~l~~~~~~~- 147 (872)
.+|.+.+..+-.....++..++ ...+...+.++..+.+. +.. -.|..+...+...+-..+...
T Consensus 16 ~~~~~~~~~Lv~l~Y~l~~~~g~~~~~~~~~~~l~~Ll~~~~~~~~~~~ll~~~dL~-LdWrPLy~~l~~~~~~~~~~~~ 94 (799)
T 1vsy_4 16 DFPVALRKSLATVYYYLSLVQGQKVYRQMHVDMFERLVSLDDDRTQFTELLQKQGLL-LDHQIMLNFLCEFLPYPDPDYA 94 (799)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHSCSCBTTBCHHHHHHHTTCC-CCHHHHHHHHTTTSCCSSTTTC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCcccccchhhccccccce-eccHHHHHHHHHhCCCcCcccc
Confidence 4788888888877777765543 23336777777776542 111 378888877766554332211
Q ss_pred ------HH--HHHHHHHHhhhhccccccc---hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhh
Q 002876 148 ------KQ--ATLETLGYICEEVSSDAVE---QDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDME 216 (872)
Q Consensus 148 ------r~--~al~~l~~i~~~~~~~~l~---~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 216 (872)
++ ..+..+..++... ...++ ....+.++..+...+. ++.- ..++..+..+ +|-....+..
T Consensus 95 ~~~~~~~~~~~~~~~l~~l~~~a-r~fF~~~~~~~~~eil~e~~p~l~---p~s~--~~~~~~l~~f---LP~~~~~~~~ 165 (799)
T 1vsy_4 95 RYELSSKEDLQLFRLLLKHAHNA-KPFFDKSKESLLVDTMNFLLSSLA---PSTM--MAVMPIVTSV---VPYHYHIHSK 165 (799)
T ss_dssp CCCTTSTTTHHHHHHHHHHHHHT-STTSCTTCGGGHHHHHHHHGGGCS---TTTH--HHHHHHHHHH---SCCCCCSSCC
T ss_pred ccccchhhhHHHHHHHHHHHHHH-HHcCCCCCccHHHHHHHHHHHhcC---chhH--HHHHHHHHHH---cCCCCCchhh
Confidence 11 4567777777665 44554 4457788887777664 2211 1333344443 3322221111
Q ss_pred HHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHhH------------H--hhHhh-------HHHHHHHHHHHHhcCC
Q 002876 217 RDYIMRVVCEATL--SPEVKIRQAAFECLVAISSTYY------------E--KLAPY-------IQDIFNITAKAVREDE 273 (872)
Q Consensus 217 ~~~il~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~------------~--~~~~~-------~~~l~~~~~~~~~~~~ 273 (872)
....++.++.+-. +.++..=...+..++.+++... . ...++ ++.++..+++.+.+..
T Consensus 166 ~~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~~~~~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~~~ 245 (799)
T 1vsy_4 166 IIDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRTDG 245 (799)
T ss_dssp SGGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHHHHHHHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhhhhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccCcC
Confidence 0123444444322 1233333455566666666532 1 13456 8888888887776321
Q ss_pred h--hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHHHHHHHhcccCCcccCCccchHhHHHHH
Q 002876 274 E--PVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGT 351 (872)
Q Consensus 274 ~--~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~ 351 (872)
. .....|--+..++.. + .+ .-+..++..++..+-...-..+ .+.|+... ..
T Consensus 246 ~~~~~~~~a~~IV~sl~~-----------~-~~-------~~~~~~L~~Li~~iesy~HPSN------~G~Wt~~L--~~ 298 (799)
T 1vsy_4 246 QIHSYSRTVKPFVYAING-----------S-KK-------DRFFEKLVSLAKAIETFIHPSN------NGFWTKPN--AK 298 (799)
T ss_dssp CCSSHHHHHHHHHTTCCT-----------T-SC-------TTTHHHHHHHHHHHHHHHSTTC------CSTTHHHH--HH
T ss_pred CccchHHHHHHHHHHcCC-----------C-Cc-------hHHHHHHHHHHHHHhcccCCCC------CCccHHHH--HH
Confidence 1 111111101111100 0 00 0111223333333322221100 12343211 11
Q ss_pred HHHHHHH--------H-------cC----------CcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHH
Q 002876 352 CLGLVAR--------T-------VG----------DDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPL 406 (872)
Q Consensus 352 ~l~~l~~--------~-------~~----------~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~ 406 (872)
.+..+.. . .+ +.++..+.|.+...+.+.+-.+...+..++..++.-. |....-.
T Consensus 299 Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-P~~~~lV 377 (799)
T 1vsy_4 299 FVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD-PSNAYLI 377 (799)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-CTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-CCcccee
Confidence 2221111 1 11 1234556777777777877777777777888777643 3333445
Q ss_pred HHHHHHHHHHHhccC---CcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHH
Q 002876 407 VNIALNFMLTALMQD---PNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALY 482 (872)
Q Consensus 407 ~~~i~~~l~~~l~~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~ 482 (872)
+|.++..+...| .. .++.-..+++.++..++..+... + ....++..++..++.+++- ++.--..+...+.
T Consensus 378 lP~vL~r~y~sL-e~~~l~e~Hrl~~aL~~l~~~~r~lv~~----~-~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~ 451 (799)
T 1vsy_4 378 YDKILIDLYDTL-ADQFINSRHRIISSLKQFTRVIRFIVMD----K-LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIV 451 (799)
T ss_dssp HHHHHHHHHHHH-TTTTTTCHHHHHHHHHHHHTTHHHHTTS----T-TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh-ccccccchhHHHHHHHHHHHHHHHHhcC----c-ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Confidence 688888888888 65 56666677888888888866432 1 2256888899999999974 3554455666666
Q ss_pred HHHHhc
Q 002876 483 FLAQGF 488 (872)
Q Consensus 483 ~l~~~~ 488 (872)
.++...
T Consensus 452 ~i~s~i 457 (799)
T 1vsy_4 452 SIAAFI 457 (799)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 666543
No 124
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.46 E-value=10 Score=38.30 Aligned_cols=116 Identities=10% Similarity=0.084 Sum_probs=85.0
Q ss_pred CCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 125 PHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 125 ~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
| .-.+++++.+++...+++..+|..+...+...+..- ......+++.+...++ |.++.|.+.++.+..++.
T Consensus 58 p-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~------~el~~~~l~~L~~LL~--d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 58 P-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD------IELLLKLIANLNMLLR--DENVNVVKKAILTMTQLY 128 (386)
T ss_dssp G-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 5 477899999999988889999999999998888643 3456777777777777 789999999999988765
Q ss_pred h----hchhhccC----hhhHHH---HHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 002876 205 G----FAQANFSN----DMERDY---IMRVVCEATLSPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 205 ~----~~~~~~~~----~~~~~~---il~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 249 (872)
. ++...-.. +..|+. +-..+.....+.+..+|..+++.+..++-.
T Consensus 129 pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 129 KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 3 22221111 123432 344555666778899999999999887743
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.24 E-value=13 Score=44.08 Aligned_cols=169 Identities=8% Similarity=0.025 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhcc----ccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHH
Q 002876 663 DYQVCAITVGVVGDLCRALEDK----ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPM 738 (872)
Q Consensus 663 ~~~v~~~a~~~l~~l~~~~~~~----~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~ 738 (872)
++.++..++-.++.+++..-.. -..++..+.+.+.+.+... +.+-+..++.+||++.. + ..++.
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~--~~~~~~~~LkaLGN~g~--p--------~~l~~ 475 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA--KEEEIVLALKALGNAGQ--P--------NSIKK 475 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTC--G--------GGHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHhhccCC--h--------hHHHH
Confidence 4568888888999988875311 2234666777777777655 44445667888888754 1 12333
Q ss_pred HHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002876 739 LQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGV 818 (872)
Q Consensus 739 l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~ 818 (872)
|.+.+....+.. .+ ....+|..++.++..+... +=..+-+.+.++..|...+.++|.+|+..
T Consensus 476 l~~~l~~~~~~~-~~-----~~~rvr~aAi~ALr~~~~~------------~p~~v~~il~~i~~n~~e~~EvRiaA~~~ 537 (1056)
T 1lsh_A 476 IQRFLPGQGKSL-DE-----YSTRVQAEAIMALRNIAKR------------DPRKVQEIVLPIFLNVAIKSELRIRSCIV 537 (1056)
T ss_dssp HHTTSTTSSSCC-CC-----SCHHHHHHHHHTTTTGGGT------------CHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHhhcCccccc-cc-----cchHHHHHHHHHHHHhhhh------------chHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 333332210000 01 1134555665554443311 11245667778887777899999998854
Q ss_pred H----------HHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHH
Q 002876 819 L----------GDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAK 863 (872)
Q Consensus 819 l----------~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~ 863 (872)
+ ..|+..+..+-...+.. +|...|+.+..++++..++.+..++
T Consensus 538 Lm~t~P~~~~l~~ia~~l~~E~~~QV~s--fv~S~l~sla~s~~P~~~~la~~~~ 590 (1056)
T 1lsh_A 538 FFESKPSVALVSMVAVRLRREPNLQVAS--FVYSQMRSLSRSSNPEFRDVAAACS 590 (1056)
T ss_dssp HHHTCCCHHHHHHHHHHHTTCSCHHHHH--HHHHHHHHHTTCCSGGGHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHhhCchHHHHH--HHHHHHHHHHhcCCcchHHHHHHHH
Confidence 4 45556655554444554 7888888888888887777665433
No 126
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=92.00 E-value=1.7 Score=43.79 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHH-HHHhccC--ChhHHHHHHHHHHHHH
Q 002876 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISV-LLQSMKD--VPNVAEKACGALYFLA 485 (872)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~-l~~~l~d--~~~v~~~a~~al~~l~ 485 (872)
..+..++..+ +.++++-|......+.++...+. ....++...+.. +.+.+.+ ...--......++.+.
T Consensus 174 ~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~--------~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsII 244 (392)
T 2jak_A 174 KFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFL--------GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSII 244 (392)
T ss_dssp HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCG--------GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 4566677788 89999999999998888887653 123444444433 3343332 1111223556677777
Q ss_pred HhcccCCCCCCCCchhHHH-HHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHhhh
Q 002876 486 QGFEDAISPSSPLTPFFQE-IVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ 564 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~-i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 564 (872)
.++. .-+.+-... +...++....... -.........|+..++...+. ....++..++..|-..
T Consensus 245 ngfa------~PLKeehk~Fl~~vLlPLhk~~~--l~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~t---- 308 (392)
T 2jak_A 245 NGFA------LPLKEEHKIFLLKVLLPLHKVKS--LSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKT---- 308 (392)
T ss_dssp HTCC------SSCCHHHHHHHHHTTGGGGTSGG--GGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHSSCSS----
T ss_pred hccC------CCCcHHHHHHHHHHhHhhccCCc--HHHhHHHHHHHHHHHHhcCch----hHHHHHHHHHHhCCCC----
Confidence 7652 223333333 3334444433221 122223445566555554443 2233444555555221
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccccchhhHHHHHHH
Q 002876 565 KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIG 633 (872)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 633 (872)
...++. ..++-+..+...+++.+ +.+...+++..+..++++++-.|-+.|+..+.
T Consensus 309 ---ns~Kev------lFL~eleeiLe~~~~~~-----f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 309 ---HSPKEV------MFLNELEEILDVIEPSE-----FVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp ---CCTTHH------HHHHHHHHHHHTCCHHH-----HHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred ---CchHHH------HHHHHHHHHHHhCCHHH-----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 111221 14455566666555442 77888899999999999988888888877654
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.79 E-value=16 Score=43.17 Aligned_cols=165 Identities=13% Similarity=0.038 Sum_probs=94.0
Q ss_pred HHHHhcCC----CChHHHHHHHHHHHHHHHhhcCC-CC-----chhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccc
Q 002876 96 FILKTLSS----PAHDARSTASQVVAKVAGIELPH-KQ-----WPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD 165 (872)
Q Consensus 96 ~ll~~l~~----~~~~vr~~~a~~l~~i~~~~~~~-~~-----~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~ 165 (872)
.+..++.+ .++.+|..+..+++.+++....+ .. -+.+.+.+.+.+...+...+..+|++|+-+-- |
T Consensus 395 ~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~---p- 470 (1056)
T 1lsh_A 395 YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ---P- 470 (1056)
T ss_dssp HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---G-
T ss_pred HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC---h-
Confidence 34455554 35789999999999998765421 11 34566666666777777777888888876521 1
Q ss_pred ccchhhHHHHHHHHHhcccC-----CCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhh--cCCCHHHHHH
Q 002876 166 AVEQDHVNKILTAVVQGMNA-----SESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEAT--LSPEVKIRQA 238 (872)
Q Consensus 166 ~l~~~~~~~i~~~l~~~l~~-----~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--~~~~~~~r~~ 238 (872)
..++.+...+.. .+....+|.+|+.+|..+....+ ..+-+++.... ...++++|.+
T Consensus 471 --------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---------~~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 --------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---------RKVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp --------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---------HHHHHHHHHHHHCTTSCHHHHHH
T ss_pred --------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---------HHHHHHHHHHhcCCCCChHHHHH
Confidence 123333333321 13356899999999888653221 22334444444 3468999999
Q ss_pred HHHHHHHHHHHhHHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 002876 239 AFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (872)
|+..|.. ..|.. ..+..+...+ -.+++.+|+......+.++++
T Consensus 534 A~~~Lm~---t~P~~--~~l~~ia~~l---~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 534 SCIVFFE---SKPSV--ALVSMVAVRL---RREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHH---TCCCH--HHHHHHHHHH---TTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH---HCcCH--HHHHHHHHHH---hhCchHHHHHHHHHHHHHHHh
Confidence 9888754 33321 1122222222 234555666555555555543
No 128
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.64 E-value=16 Score=35.65 Aligned_cols=185 Identities=9% Similarity=0.108 Sum_probs=116.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhhcCC--------CCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcc-cc-
Q 002876 96 FILKTLSSPAHDARSTASQVVAKVAGIELPH--------KQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVS-SD- 165 (872)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--------~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~- 165 (872)
.++..|..=+-.-|+.++++++.+.+...+. ...|+++..|+.+-..++.....|. .|...++.-. ..
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~e~la~~ 159 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRHEPLAKI 159 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTSHHHHHH
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHhHHHHHH
Confidence 4455555556667777777777776643221 1368899999988877654322221 1111111100 00
Q ss_pred ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchh---hccChhhHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 002876 166 AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQA---NFSNDMERDYIMRVVCEATLSPEVKIRQAAFEC 242 (872)
Q Consensus 166 ~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~ 242 (872)
.+..+.+. .+.+.+. .++-++-.-|..++..++..-+. .|.. ...+.++.....++.+++--.|+.+++.
T Consensus 160 iL~~~~f~----~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lvaefL~-~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 160 ILWSEQFY----DFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLE-QHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHSGGGG----HHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHH-HTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HhccHHHH----HHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHHHHHH-HhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 01011122 3445555 67888988888888877642111 1111 1235677777788999999999999999
Q ss_pred HHHHHHH--hHHhhHhhHH--HHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 002876 243 LVAISST--YYEKLAPYIQ--DIFNITAKAVREDEEPVALQAIEFWSSVCD 289 (872)
Q Consensus 243 l~~l~~~--~~~~~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~ 289 (872)
|+.++-. ....+..|+. .-+..+...+++....++..|+.++...+.
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 9998864 5566777764 567778888899999999999998877764
No 129
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.37 E-value=17 Score=35.50 Aligned_cols=188 Identities=12% Similarity=0.133 Sum_probs=107.3
Q ss_pred CCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC--C
Q 002876 50 EKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPH--K 127 (872)
Q Consensus 50 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--~ 127 (872)
..+.+.|.-++.++.+.++......-.. ..|. +.+..+...|+.+-. ++.+--.++..+..+++++.-. -
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p~--v~Yl----~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~la~~i 160 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTPT--VEYI----CTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEPLAKII 160 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHH--HHHH----HTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHHHHHHH
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCch--hHHH----HcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHHHHHHH
Confidence 4577788888777766665432110000 0000 011233334444443 3455556666666666543100 0
Q ss_pred CchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhc---cccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 128 QWPELIGALLSNIHQLPPHTKQATLETLGYICEEV---SSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 128 ~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~---~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
-+.+.+..+.+.++.++=++-.-|+.++..+...- ..+.+ ..+.+.++..+.+.+. +++.-.|.-+++.|+.++
T Consensus 161 L~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL-~~nyd~Ff~~y~~Ll~--S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 161 LWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFL-EQHYDRFFSEYEKLLH--SENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHH-HHhHHHHHHHHHHHhc--CCcchhHHHHHHHHHHHH
Confidence 01122334445566665555556666776655431 13344 4567778888887777 789999999999999987
Q ss_pred hhchhhccChh---hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 002876 205 GFAQANFSNDM---ERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 205 ~~~~~~~~~~~---~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 249 (872)
.- +.++.... ....-+..+..++++++..++..|+.++.-++.+
T Consensus 238 ld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 238 LD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred hC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 41 11111000 0134577888889999999999999999887763
No 130
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=88.42 E-value=15 Score=35.93 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=69.8
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhhhcccc----ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhc
Q 002876 136 LLSNIHQLPPHTKQATLETLGYICEEVSSD----AVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANF 211 (872)
Q Consensus 136 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~----~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (872)
+++.+.+.+...+..++.-|..++..- .+ ++...- +..++.... +.+.+....++.+|..++.+..+.
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~G----L~~Li~vi~--~~~gN~q~Y~L~AL~~LM~~v~Gm- 194 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEG----LSCLIRVGA--AADHNYQSYILRALGQLMLFVDGM- 194 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTH----HHHHHHHHT--TSCHHHHHHHHHHHHHHTTSHHHH-
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhcc----HHHHHHHHH--hcChHHHHHHHHHHHHHHhccccc-
Confidence 334445555666777888888755431 12 121112 234444455 568899999999999988763321
Q ss_pred cChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 212 SNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 212 ~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
..-...+.+++-+..++.+.+..+.+.+++.|..++...+
T Consensus 195 ~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred cchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 1000125677888888888889999999999999988654
No 131
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.38 E-value=32 Score=35.38 Aligned_cols=228 Identities=14% Similarity=0.142 Sum_probs=115.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHH-----HHHHhhc-CCChhHHHHHHHHHHHhhhhccccc
Q 002876 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIG-----ALLSNIH-QLPPHTKQATLETLGYICEEVSSDA 166 (872)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~-----~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~ 166 (872)
+...|+..+.++|+.-|..+-.++-+|.....+ ...++. .+...+. ..........|++++.|+... .--
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~---~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGf-a~P 238 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG---LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF-ALP 238 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTT---THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSC-CSS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcc-CCC
Confidence 444577778888888888888888777754422 111111 1111111 111222334677777777765 222
Q ss_pred cchhhHHHHHHHHHhcccCCCCCHHHH-HHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002876 167 VEQDHVNKILTAVVQGMNASESNNDVR-LAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVA 245 (872)
Q Consensus 167 l~~~~~~~i~~~l~~~l~~~~~~~~vr-~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~ 245 (872)
+...+..-+...++.... ......- ..-..|+..+++.-+. -...++..+...---.+..-....+.-+..
T Consensus 239 LKeehk~fl~~vLlPLhk--~~~l~~y~~qL~ycv~qf~eKDp~------L~~~vi~~LLk~WP~tns~KevlFL~elee 310 (449)
T 2npp_B 239 LKEEHKIFLLKVLLPLHK--VKSLSVYHPQLAYCVVQFLEKDST------LTEPVVMALLKYWPKTHSPKEVMFLNELEE 310 (449)
T ss_dssp CCHHHHHHHHHTTGGGGG--SSCGGGTHHHHHHHHHHHHHHCGG------GHHHHHHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHc--cchhHHhHHHHHHHHHHHHhcCcH------hHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 323333333344444433 1222221 1222344443321111 112344444443322222222233444455
Q ss_pred HHHHh-HHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhhHHHH
Q 002876 246 ISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPL 324 (872)
Q Consensus 246 l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 324 (872)
++... +..+...+..++..+-..+.+++-.|...|+.+|..--- ...+...-..++|.
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i---------------------~~li~~n~~~IlPi 369 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYI---------------------MSLISDNAAKILPI 369 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHH---------------------HHHHHTTHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHH---------------------HHHHHhchhhhHHh
Confidence 55432 344555666777778888889999999999998865211 12334444556777
Q ss_pred HHHHHhcccCCcccCCccc--hHhHHHHHHHHHHHHH
Q 002876 325 LLETLLKQEEDQDQDEGAW--NIAMAGGTCLGLVART 359 (872)
Q Consensus 325 l~~~l~~~~~d~~~~~~~~--~~r~~a~~~l~~l~~~ 359 (872)
++..+..... .-| .++..+..++..+.+.
T Consensus 370 i~p~L~~~s~------~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 370 MFPSLYRNSK------THWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHTSCTT------CCSSTTHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHH------HhcCHHHHHHHHHHHHHHHHH
Confidence 7776543221 125 5677778887766554
No 132
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=82.31 E-value=50 Score=34.22 Aligned_cols=61 Identities=8% Similarity=0.034 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 002876 188 SNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISST 249 (872)
Q Consensus 188 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 249 (872)
.++.+-.-|+.=++.++.+.|..-..- ..-..-..+.+++.++++++|..|+.|+..++.+
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~-~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVL-DKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHH-HHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHH-HHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 366777788888899887766432110 1112345667788999999999999999987754
No 133
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=82.08 E-value=46 Score=33.66 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHh-HHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhh
Q 002876 239 AFECLVAISSTY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHA 317 (872)
Q Consensus 239 ~~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (872)
-+.-+..++... +..+.+....++..+...+.+++-.|...|+.+|..-. ....+.+.
T Consensus 271 FL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~---------------------i~~li~~n 329 (403)
T 3fga_B 271 FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEY---------------------IMSLISDN 329 (403)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHH---------------------HHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHH---------------------HHHHHHHh
Confidence 344445555433 34455556677777778888999999999999885421 01233444
Q ss_pred hhhHHHHHHHHHhcccCCcccCCccc--hHhHHHHHHHHHHHHHcC
Q 002876 318 LPVLVPLLLETLLKQEEDQDQDEGAW--NIAMAGGTCLGLVARTVG 361 (872)
Q Consensus 318 l~~l~~~l~~~l~~~~~d~~~~~~~~--~~r~~a~~~l~~l~~~~~ 361 (872)
...++|.++..+.+... .-| .++..+..++..+.+.-+
T Consensus 330 ~~~IlPii~p~L~~~~~------~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 330 AAKILPIMFPSLYRNSK------THWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHHHHHHTTS------CCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHH------HccCHHHHHHHHHHHHHHHHhCH
Confidence 44566666655533211 226 466777778777766544
No 134
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.61 E-value=9.8 Score=33.03 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
..+..+.+-+++.++.+.-.|+..|..+++.+|..|...+. .++..+.+.+....++.|+..++.++......++.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45556666677778888889999999999999998885553 36666766666445679999999999998888764
No 135
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=80.56 E-value=25 Score=29.89 Aligned_cols=77 Identities=9% Similarity=0.014 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcC-----CChhhHHHHHHHHHHHHHH
Q 002876 607 DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQN-----FEDYQVCAITVGVVGDLCR 679 (872)
Q Consensus 607 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~ 679 (872)
...+..+..-+++.++.+.-.|+..+..+++.+|..|...+ ..++..|.+.+.. ..+..|+...+.++.....
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34566677777888888999999999999999999887554 3477777777753 2356899999999999988
Q ss_pred HHhc
Q 002876 680 ALED 683 (872)
Q Consensus 680 ~~~~ 683 (872)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 8764
No 136
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=77.61 E-value=46 Score=31.01 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhH
Q 002876 145 PHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNAL 204 (872)
Q Consensus 145 ~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (872)
+..|.++|-+++.+++.-+++.+..--..+++|.++..++ .++.--+..|.-++..++
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime--~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME--SGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh--hccHHHHHHHHHHHHHHh
Confidence 5789999999999998754554421223678999999998 577777777777777765
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.54 E-value=16 Score=31.92 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcC-----CChhhHHHHHHHHHHHHHHH
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQN-----FEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~~ 680 (872)
..+..+.+-+++.++.+.-.|+..|..+++.+|..|...+. .++..|.+.+.. ..+..|+..++.++......
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45566667777888889999999999999999998886553 467777777652 23468999999999999888
Q ss_pred Hhc
Q 002876 681 LED 683 (872)
Q Consensus 681 ~~~ 683 (872)
++.
T Consensus 130 f~~ 132 (171)
T 1juq_A 130 LPE 132 (171)
T ss_dssp CTT
T ss_pred cCC
Confidence 764
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=75.73 E-value=21 Score=30.30 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcC-----CChhhHHHHHHHHHHHHHHH
Q 002876 608 QMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQN-----FEDYQVCAITVGVVGDLCRA 680 (872)
Q Consensus 608 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~~ 680 (872)
..+..+..-+++.++.+.-.|+..|..+++.+|..|...+ ..++..|.+.+.. ..+..|+..++.++......
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556666677788888999999999999999999887665 3588888877763 23568999999999998888
Q ss_pred Hhc
Q 002876 681 LED 683 (872)
Q Consensus 681 ~~~ 683 (872)
++.
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 764
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.54 E-value=19 Score=33.32 Aligned_cols=77 Identities=8% Similarity=0.028 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 607 DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 607 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
...+..+.+-+++.++.+.-.|+..|..+++.+|..|...+ ..++..|.+.++...+..|+..++.++......++.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 44566677777888888999999999999999998877554 236666666665555678999999999998888764
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.30 E-value=42 Score=28.09 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhh--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 607 DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYM--PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 607 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
...+..+..-+++.++.+.-.|+..+..+++.+|..|...+ ..++..+.+.+.. .++.|+...+.++......++.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCC
Confidence 34566677777888888888999999999999999887544 3466666665543 3568999999999998888764
No 141
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=70.79 E-value=47 Score=28.16 Aligned_cols=77 Identities=9% Similarity=0.101 Sum_probs=54.2
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHHH
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS------PEVKIRQAAFECLVAIS 247 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~------~~~~~r~~~~~~l~~l~ 247 (872)
..+..+...+. +.++.+...|+..+..++...+..|..+.....+++-+...+.. .++.|+..+++.+....
T Consensus 48 ~a~ral~krl~--~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQ--SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 34445666666 78999999999999998877666554332224566666666642 57889999999888877
Q ss_pred HHhHH
Q 002876 248 STYYE 252 (872)
Q Consensus 248 ~~~~~ 252 (872)
..++.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 76643
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.18 E-value=24 Score=32.51 Aligned_cols=77 Identities=9% Similarity=0.050 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 607 DQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 607 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
...+..+..-+++.++.+...|+..|..+++.+|..|...+. .++..+.+.+.+..+..|+..++.++......++.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 345556666777888889999999999999999988865442 36666666665455668999999999888887763
No 143
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.98 E-value=23 Score=29.74 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=48.2
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhH
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 251 (872)
..+..+...+. +.++.+...|+..+..++...+..|..+.....+++-+...+...++.|+..++..+......++
T Consensus 42 ~a~rai~Krl~--~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 42 DCLRSIMRRVN--HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 33445555566 67888999999998888876655443222113344444444444678888888888877666554
No 144
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=65.37 E-value=1.9e+02 Score=34.61 Aligned_cols=176 Identities=13% Similarity=0.081 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHH---------------HHHHHHHHhcCCCChHHHHHHHHHH
Q 002876 52 PVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKA---------------QIKSFILKTLSSPAHDARSTASQVV 116 (872)
Q Consensus 52 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~---------------~i~~~ll~~l~~~~~~vr~~~a~~l 116 (872)
+...|..|-.++|+.+... .+..+... .+....-.++.+.++.++.-++...
T Consensus 358 n~~~rk~aE~ilrkkI~~G-------------~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY 424 (1323)
T 3s4w_B 358 STQTKKGVEKLLRNKIQSD-------------CIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLY 424 (1323)
T ss_dssp CHHHHHHHHHHHHHHHTTT-------------CSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcC-------------CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4577888999999988742 12222211 1111111235567889999999888
Q ss_pred HHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHH
Q 002876 117 AKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAA 196 (872)
Q Consensus 117 ~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~a 196 (872)
..++... ....-++++..|+..+.+++.....+|+.+|..++... +..+ .+ ...++..++..+.+ =...++|..
T Consensus 425 ~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~-~~~l-~~-~a~~l~giLD~l~~-l~~~QiRkl- 498 (1323)
T 3s4w_B 425 KYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN-ASAM-RL-NAAFVKGILDYLEN-MSPQQIRKI- 498 (1323)
T ss_dssp HHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-HHHH-HH-THHHHHGGGGGGGG-CCHHHHHHH-
T ss_pred HHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC-HHHH-hH-HHHHHHHHHHhhcC-CCHHHHHHH-
Confidence 8888764 21123688888888887777777888999999988765 5544 22 23344455555552 223556554
Q ss_pred HHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 002876 197 TRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (872)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~ 247 (872)
...+..+....+.. ......+.+.-++-+.+.+++.+.++...-.-..++
T Consensus 499 f~iL~~laf~~~~~-~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v 548 (1323)
T 3s4w_B 499 FCILSTLAFSQQPG-TSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMA 548 (1323)
T ss_dssp HHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC-cchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHH
Confidence 66666544211111 111233566666667777777777765443333333
No 145
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=65.13 E-value=18 Score=30.24 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=51.9
Q ss_pred CCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHh----------ccCCcHHHHHHH
Q 002876 361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL----------MQDPNNHVKDTT 430 (872)
Q Consensus 361 ~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l----------~~d~~~~vr~~a 430 (872)
+...+..++.+|.+.+++.+|.++.-++.+|..++...+ +.+...+..-...+..+. ..|....||..|
T Consensus 43 ~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~A 121 (140)
T 1vdy_A 43 HVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETA 121 (140)
T ss_dssp CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHH
Confidence 335567889999999999999999999999999886653 333333322222222221 123346799999
Q ss_pred HHHHHHhhhh
Q 002876 431 AWTLGRMFEF 440 (872)
Q Consensus 431 ~~~l~~l~~~ 440 (872)
-.++..+...
T Consensus 122 kEl~~ll~d~ 131 (140)
T 1vdy_A 122 HETISAIFSE 131 (140)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhCc
Confidence 8888877664
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=63.13 E-value=41 Score=29.37 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=53.3
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHHH
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATL------SPEVKIRQAAFECLVAIS 247 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~------~~~~~~r~~~~~~l~~l~ 247 (872)
..+..+.+.++ +.++.++..|+..+..++...+..|..+.....+++-+..++. ..+..||..+++.+....
T Consensus 50 ~A~ral~krl~--~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQ--SPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 34455666667 7899999999999999887766555433222456666666554 236789999998888877
Q ss_pred HHhHH
Q 002876 248 STYYE 252 (872)
Q Consensus 248 ~~~~~ 252 (872)
..++.
T Consensus 128 ~~f~~ 132 (171)
T 1juq_A 128 MALPE 132 (171)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 76543
No 147
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.61 E-value=55 Score=27.72 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=52.5
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHHHHH
Q 002876 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS------PEVKIRQAAFECLVAISST 249 (872)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~------~~~~~r~~~~~~l~~l~~~ 249 (872)
+..+...++ +.++.+...|+..+..++...+..|..+.....+++-+...+.. .++.|+..+++.+......
T Consensus 40 ~rai~krl~--~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 40 PWLLAHKIQ--SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555566 78999999999999998877665554332234677777776653 4788999998888887766
Q ss_pred hH
Q 002876 250 YY 251 (872)
Q Consensus 250 ~~ 251 (872)
++
T Consensus 118 f~ 119 (148)
T 1mhq_A 118 FP 119 (148)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 148
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=60.14 E-value=77 Score=26.64 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=62.0
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHH
Q 002876 115 VVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRL 194 (872)
Q Consensus 115 ~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~ 194 (872)
.++.++..-. ..-..++..+.+.+....+..+..+|.++..|++... ..+.......+.+.+..... ..+...|.
T Consensus 29 ~LT~~a~~~~--~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g-~~y~~~F~~~l~~~f~~~~~--~~d~~~r~ 103 (144)
T 1sz9_A 29 TLTKLAEENI--SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG-SPYTIYFSRNLFNLYKRTYL--LVDNTTRT 103 (144)
T ss_dssp HHHHHHHHTG--GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-TTHHHHHHTTHHHHHHHHHH--TSCHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHH--hCCHHHHH
Confidence 3555554321 2456788888888877778999999999999999984 33423344555666666665 46789999
Q ss_pred HHHHHHHHhHhhc
Q 002876 195 AATRALYNALGFA 207 (872)
Q Consensus 195 ~al~~l~~~~~~~ 207 (872)
...+.+..|-...
T Consensus 104 k~~rL~~~W~~~~ 116 (144)
T 1sz9_A 104 KLINMFKLWLNPN 116 (144)
T ss_dssp HHHHHHHHHTSGG
T ss_pred HHHHHHHHHhCcc
Confidence 9999999876543
No 149
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=58.35 E-value=29 Score=30.03 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=47.6
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhH
Q 002876 174 KILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLS-PEVKIRQAAFECLVAISSTYY 251 (872)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~ 251 (872)
..+..+.+.++ +.++.++..|+..+..++......|..+.....+++-+..++.. .++.|+..+++.+......++
T Consensus 52 eA~ral~krl~--~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 52 DCLKAIMKRVN--HKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 33445555666 67899999999999998876555443222223344444444432 567888888887776665543
No 150
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=57.35 E-value=1.6e+02 Score=29.56 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCC-c-hhHHHHHHHhhcC-CChhHHHHHHHHHHHhhhhccccccch
Q 002876 93 IKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQ-W-PELIGALLSNIHQ-LPPHTKQATLETLGYICEEVSSDAVEQ 169 (872)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~-~-~~l~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~l~~ 169 (872)
+...|+..+.++|+.-|..+..++.++.....+... . ..+-+.+...+.. .........|++++.|+... .--+..
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf-a~PLKe 253 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF-ALPLKE 253 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC-CSSCCH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc-CCCCcH
Confidence 344577778888888888888777777654322100 0 1111112222221 11222334677777777765 222312
Q ss_pred hhHHHHHHHHHhcccCCCCCHHHH-HHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 002876 170 DHVNKILTAVVQGMNASESNNDVR-LAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISS 248 (872)
Q Consensus 170 ~~~~~i~~~l~~~l~~~~~~~~vr-~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~ 248 (872)
.+..-+...++...+ .+....- ..-..|+..+++.-++ -...++..+...---.+..-...-+.-+..++.
T Consensus 254 ehk~Fl~~vLlPLhk--~~~l~~y~~qL~ycv~qf~eKDp~------L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe 325 (392)
T 2jak_A 254 EHKIFLLKVLLPLHK--VKSLSVYHPQLAYCVVQFLEKDST------LTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 325 (392)
T ss_dssp HHHHHHHHTTGGGGT--SGGGGGTHHHHHHHHHHHHHHCGG------GHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhcc--CCcHHHhHHHHHHHHHHHHhcCch------hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 222223333333333 1111111 1122333332221111 112344444443211111111233344444554
Q ss_pred Hh-HHhhHhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002876 249 TY-YEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSS 286 (872)
Q Consensus 249 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~~~~ 286 (872)
.. +..+...+..++..+-..+.++.-.|...|+.+|..
T Consensus 326 ~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wnN 364 (392)
T 2jak_A 326 VIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN 364 (392)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGGC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCc
Confidence 33 344555666777778888889999999999998865
No 151
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=57.12 E-value=44 Score=31.09 Aligned_cols=73 Identities=8% Similarity=0.005 Sum_probs=51.8
Q ss_pred hchHHHHHhhhcCcchhhhHHHHH----HHHHhhCCCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 002876 366 PLVMPFVEENITKQEWRQREAATY----AFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFL 441 (872)
Q Consensus 366 ~~l~~~l~~~~~~~~~~~r~aal~----~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
|...+.+.+...|++.-.|.+|.. .+.. ....+.-...+..++..+...+ .|++..|+.+..|+|..++...
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l-~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTI-HHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHhhC
Confidence 556777888888877444555554 3333 2111223456788888888899 9999999999999999998875
Q ss_pred c
Q 002876 442 H 442 (872)
Q Consensus 442 ~ 442 (872)
+
T Consensus 183 ~ 183 (235)
T 1t06_A 183 V 183 (235)
T ss_dssp G
T ss_pred H
Confidence 3
No 152
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=54.03 E-value=36 Score=31.28 Aligned_cols=89 Identities=9% Similarity=0.061 Sum_probs=54.2
Q ss_pred ccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcc-hhhhHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhc
Q 002876 341 GAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQE-WRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALM 419 (872)
Q Consensus 341 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~ 419 (872)
+.|.+....+.+++.+....+. .+.+.+.+...|++ |..|.+....+ ... -..+...+++.+...+
T Consensus 102 ~nWd~~D~~a~~~~~~~~~~~~----~~~~~i~~W~~s~~~w~rR~ai~~~l----~~~----~~~~~~~~~~i~~~~~- 168 (220)
T 2b6c_A 102 AWWDSVDAWRKFFGSWVALHLT----ELPTIFALFYGAENFWNRRVALNLQL----MLK----EKTNQDLLKKAIIYDR- 168 (220)
T ss_dssp CSHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHTTCSSHHHHHHHHHTTT----TCG----GGCCHHHHHHHHHHTT-
T ss_pred CcHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHcCCCHHHHHHHHHHHH----HHH----HCCCHHHHHHHHHHhC-
Confidence 4476654333333333333222 25567788888887 55444444222 111 1223455677777788
Q ss_pred cCCcHHHHHHHHHHHHHhhhhcc
Q 002876 420 QDPNNHVKDTTAWTLGRMFEFLH 442 (872)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
.|++..|+.+..|+|..++...+
T Consensus 169 ~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 169 TTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CChHHHHHHHHHHHHHHHHhhCH
Confidence 99999999999999999988654
No 153
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=52.26 E-value=1.8e+02 Score=28.49 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-HHhc-Ch------hHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhH
Q 002876 4 EVTQILLNAQSVDGTVRKQAEESLKQ-YQEQ-NL------PGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRK 75 (872)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~a~~~L~~-~~~~-~~------~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~ 75 (872)
....++..+++++...++.|-..|++ +++. .+ .+-+..|+.++.. .+.++..+++..|.+.....
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~--~~gN~q~Y~L~AL~~LM~~v----- 191 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA--ADHNYQSYILRALGQLMLFV----- 191 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSH-----
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh--cChHHHHHHHHHHHHHHhcc-----
Confidence 45567777788888899999999998 5432 00 1235566777754 37899999999999987641
Q ss_pred HHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcC-----------------CCCchhHHHHHHH
Q 002876 76 FELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELP-----------------HKQWPELIGALLS 138 (872)
Q Consensus 76 ~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-----------------~~~~~~l~~~l~~ 138 (872)
..|..+-. .....+.+...+.+.+..|.+.+-.++-.++...-. ...|..++..|..
T Consensus 192 ----~Gm~gvvs--~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~ 265 (339)
T 3dad_A 192 ----DGMLGVVA--HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEE 265 (339)
T ss_dssp ----HHHHHHHH--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred ----ccccchhC--CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhc
Confidence 11211100 123445566667766666666666665555543310 0124444332211
Q ss_pred hhcCCChhHHHHHHHHHHHhhhhc
Q 002876 139 NIHQLPPHTKQATLETLGYICEEV 162 (872)
Q Consensus 139 ~l~~~~~~~r~~al~~l~~i~~~~ 162 (872)
. .+.+......|+..+..++...
T Consensus 266 ~-~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 266 K-NGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHHHC
T ss_pred c-CCCCHHHHHHHHHHHHHHHhcC
Confidence 1 1445666666666666666554
No 154
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.72 E-value=1e+02 Score=26.41 Aligned_cols=75 Identities=8% Similarity=0.068 Sum_probs=54.7
Q ss_pred HHHHHHHHHHh-ccccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHH-HHhhhcCC--ChhhHHHHHHHHHHHHHHHH
Q 002876 608 QMMGLFLRVFA-IRSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKY-VEMGLQNF--EDYQVCAITVGVVGDLCRAL 681 (872)
Q Consensus 608 ~i~~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~-l~~~l~~~--~~~~v~~~a~~~l~~l~~~~ 681 (872)
..+..+..-++ ..++.+.-.|+..+..+++.+|..|...+. .++.. +.+.+... ....|+..++.++......+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 44555666666 367778889999999999999998886553 36665 56666422 23478999999999888877
Q ss_pred h
Q 002876 682 E 682 (872)
Q Consensus 682 ~ 682 (872)
+
T Consensus 133 ~ 133 (157)
T 1elk_A 133 R 133 (157)
T ss_dssp T
T ss_pred C
Confidence 5
No 155
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=51.24 E-value=97 Score=29.78 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHH--------HHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCC
Q 002876 17 GTVRKQAEESLKQYQEQNLPGFLL--------SLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLD 86 (872)
Q Consensus 17 ~~~r~~a~~~L~~~~~~~~~~~~~--------~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~ 86 (872)
.+.-..|-..|.++... ..|.. .|..++++...++.+|..|+.++...++.+...-.... ..|+.+-
T Consensus 42 ~~~le~aLD~L~ElSHD--i~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~-~~~p~fv 116 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHD--YKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFIN-ESFPNFK 116 (315)
T ss_dssp HHHHHHHHHHHGGGTTS--HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HHCTTHH
T ss_pred HHHHHHHHHHHHHhhhh--HHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHH-HhChhHH
Confidence 33456666666666443 33322 33445555567889999999999999998876554433 4665443
No 156
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=48.95 E-value=1.2e+02 Score=25.47 Aligned_cols=98 Identities=7% Similarity=0.018 Sum_probs=63.1
Q ss_pred HhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHH-HHHhhhcCCChhhHHHHHHHHHHHHHHHHh
Q 002876 604 QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYK-YVEMGLQNFEDYQVCAITVGVVGDLCRALE 682 (872)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~-~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 682 (872)
.+...+++.+.+.+....+.-+-.++..+..+++..|..+.+++...++ .+....... +...|.....++...-...+
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~-d~~~r~k~~rL~~~W~~~~~ 117 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLV-DNTTRTKLINMFKLWLNPND 117 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTS-CHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhCccc
Confidence 4677788888888877777788889999999999999877777665444 343444433 34677776666666544433
Q ss_pred ccccccHHHHHHHHHHHccC
Q 002876 683 DKILPYCDGIMTQLLKDLSS 702 (872)
Q Consensus 683 ~~~~~~~~~i~~~l~~~l~~ 702 (872)
....-|-+.++..+-+.|..
T Consensus 118 ~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 118 TGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp CSSCSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 22123445566665555443
No 157
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=48.61 E-value=22 Score=30.24 Aligned_cols=79 Identities=9% Similarity=0.078 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHH--HHHHH-HHHHccCCC-CCCCCchhHHHHHHHHHHH
Q 002876 648 PEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCD--GIMTQ-LLKDLSSNQ-LHRSVKPPIFSCFGDIALA 723 (872)
Q Consensus 648 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~-l~~~l~~~~-~~~~v~~~~~~~l~~i~~~ 723 (872)
...+..|.+.+....++.+...|+.++..++.++|..|...+. .+++. |.+++.... .+..||..++..+..-+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3456667777764345566677999999999999977665443 56664 666665432 2235777777777777766
Q ss_pred hcc
Q 002876 724 IGE 726 (872)
Q Consensus 724 ~~~ 726 (872)
++.
T Consensus 132 F~~ 134 (152)
T 3rru_A 132 FPG 134 (152)
T ss_dssp CSS
T ss_pred hCC
Confidence 654
No 158
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=47.84 E-value=1.7e+02 Score=26.95 Aligned_cols=122 Identities=8% Similarity=-0.051 Sum_probs=74.2
Q ss_pred CChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHHHhhcCCCCc
Q 002876 51 KPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTAS-QVVAKVAGIELPHKQW 129 (872)
Q Consensus 51 ~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a-~~l~~i~~~~~~~~~~ 129 (872)
...+.|.+|+.+++...+ .++++....+.. ++. ..++..+....| .+++.++... |.
T Consensus 73 ~~~E~r~~ai~~l~~~~k---------------~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~-p~--- 130 (232)
T 3jxy_A 73 PEREFQAAALDIMQKYKK---------------HINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKH-PE--- 130 (232)
T ss_dssp SBHHHHHHHHHHHHHTGG---------------GCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHC-GG---
T ss_pred cHHHHHHHHHHHHHHHHH---------------hCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHC-HH---
Confidence 357789998888864322 133444444432 222 245666666654 6677777643 31
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHh
Q 002876 130 PELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALG 205 (872)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (872)
.+.+.+.....+++.-.|+.|+..+-.. .. ......++..+...+. |++.-|+.+.--+|..+..
T Consensus 131 -~~~~~l~~W~~s~~~w~rR~ai~~~l~~-------~~-~~d~~~~~~~i~~~~~--d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 131 -LISAYIPKWIASDNIWLQRAAILFQLKY-------KQ-KMDEELLFWIIGQLHS--SKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp -GGGGTHHHHHHSSCHHHHHHHHHTTTTC-------GG-GCCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHHH-------Hh-CCCHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHh
Confidence 1445566778888998888887665211 11 2333455555555566 8899999999988888543
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=43.97 E-value=48 Score=27.64 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCC--
Q 002876 673 VVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTS-- 750 (872)
Q Consensus 673 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~-- 750 (872)
++..|++.....-...+..+++.|.+.|.+. +..++--++..|..++..-.+.|...+..=...|..+.+-...++
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~ 108 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPL 108 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTT
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcc
Confidence 4444544432211123478999999999988 556767778888887765556666655554444433332221111
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHhh
Q 002876 751 GVDDDMTEYTNSLRNGILEAFSGIFQ 776 (872)
Q Consensus 751 ~~d~~~~~~~~~~~~~~~~~~~~l~~ 776 (872)
.++ +.-..||..+-+++..|..
T Consensus 109 ~G~----d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 109 KGD----ALNKAVRETAHETISAIFS 130 (140)
T ss_dssp TSS----CHHHHHHHHHHHHHHHHTC
T ss_pred ccc----chhHHHHHHHHHHHHHHhC
Confidence 122 2456889888887666654
No 160
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=42.05 E-value=2.9e+02 Score=29.79 Aligned_cols=107 Identities=9% Similarity=0.073 Sum_probs=65.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhcccccc-----chhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhc
Q 002876 133 IGALLSNIHQLPPHTKQATLETLGYICEEVSSDAV-----EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFA 207 (872)
Q Consensus 133 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l-----~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (872)
+..+...++++.......++..+..+.....+..+ +......+++.+...+.. .++..+|..|..++..++..+
T Consensus 319 l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~-~P~~~lR~~a~~vl~~~I~~~ 397 (596)
T 4f52_E 319 MGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTL-CPIETLRKKSLAMLQLYINKL 397 (596)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHhC
Confidence 44566667777777777788888777666533322 123344455555554443 789999999999999987543
Q ss_pred hhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 002876 208 QANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAIS 247 (872)
Q Consensus 208 ~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~ 247 (872)
+. ..+-.++..+.+-. ..+.++..++..+..-+
T Consensus 398 ~~-----e~R~~iL~~LL~~~--~~~~v~~~lI~~~KdeI 430 (596)
T 4f52_E 398 DS-----QGKYTLFRCLLNTS--NHSGVEAFIIQNIKNQI 430 (596)
T ss_dssp CH-----HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHH
T ss_pred Ch-----HHHHHHHHHHHhcC--CChHHHHHHHHHHHHHH
Confidence 32 23445666555433 45566666655555443
No 161
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=38.22 E-value=2.2e+02 Score=27.49 Aligned_cols=117 Identities=8% Similarity=-0.020 Sum_probs=66.3
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHh
Q 002876 409 IALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLAQG 487 (872)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
.++..+...+..+..+..+-.+++++.++...-... .........+++.+...+.+ +..+|..++..+.++.-.
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~-----~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~ 221 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ-----KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVC 221 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH-----HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH-----HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 344444455512345666777777777777653210 01112445677777766554 688898888888888765
Q ss_pred cccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHc
Q 002876 488 FEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537 (872)
Q Consensus 488 ~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~ 537 (872)
.... .. .+-...++..+...+.... +......++-++++++..
T Consensus 222 ~~~~----~~-~~~~~~ll~~l~~il~~~~--d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 222 FHKD----HN-IEGKAQCLSLISTILEVVQ--DLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHS----CC-HHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTT
T ss_pred Hhhc----CC-chHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHhC
Confidence 4321 11 1233345555555554433 445555677788888754
No 162
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=37.61 E-value=3.7e+02 Score=27.89 Aligned_cols=70 Identities=9% Similarity=0.018 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcc----------ccchhhHHHHHHHHHHHHhhhh--hHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002876 608 QMMGLFLRVFAIR----------SATAHEEAMLAIGALAYATGQD--FLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVG 675 (872)
Q Consensus 608 ~i~~~l~~~l~~~----------~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 675 (872)
.++..+.++|.+. ++.+..-|+.=+|.+++..+.. ...-+ ..=..++..+.+ ++++||..|+.+++
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l-g~K~~VM~Lm~h-~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNH-SDSRVKYEALKATQ 472 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc-CcHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 5777778888642 2333444555577777765432 21111 133455666664 56799999999998
Q ss_pred HHHH
Q 002876 676 DLCR 679 (872)
Q Consensus 676 ~l~~ 679 (872)
.++.
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 163
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.88 E-value=1.2e+02 Score=27.85 Aligned_cols=75 Identities=7% Similarity=0.053 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002876 792 PHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868 (872)
Q Consensus 792 ~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 868 (872)
...+..+.+.+.. .++.+...|+.++..++++.|..|...+-..+++..|.+-+....++.+|+-+.-....-..
T Consensus 44 k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4567777777774 68899999999999999999998887777766665554444444567777766555544433
No 164
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=35.72 E-value=2.6e+02 Score=25.65 Aligned_cols=137 Identities=17% Similarity=0.091 Sum_probs=76.6
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhc-CCChhHHHHH-HHHHHHhhhhccccccchhhHHHHH
Q 002876 99 KTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIH-QLPPHTKQAT-LETLGYICEEVSSDAVEQDHVNKIL 176 (872)
Q Consensus 99 ~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a-l~~l~~i~~~~~~~~l~~~~~~~i~ 176 (872)
.+..++..+.|-.+...+....+. ..++-++.+...+. -+++.+.... -.+++.++... |+. +.
T Consensus 68 ~L~~~~~~E~r~~ai~~l~~~~k~-----~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-p~~--------~~ 133 (232)
T 3jxy_A 68 ELWDLPEREFQAAALDIMQKYKKH-----INETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-PEL--------IS 133 (232)
T ss_dssp HHHTSSBHHHHHHHHHHHHHTGGG-----CCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-GGG--------GG
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-HHH--------HH
Confidence 344455556666555555422211 12233333333332 2345554433 34555555443 331 12
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhHHhhHh
Q 002876 177 TAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAP 256 (872)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 256 (872)
+.+...+. +++.-+|..|+..+-. +.. ..+...++..+...+.+++.-+++++--.|..+...+|+.+.+
T Consensus 134 ~~l~~W~~--s~~~w~rR~ai~~~l~---~~~-----~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 134 AYIPKWIA--SDNIWLQRAAILFQLK---YKQ-----KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GTHHHHHH--SSCHHHHHHHHHTTTT---CGG-----GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHhc--CCchHHHHHHHHHHHH---HHh-----CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 33444555 6778888887765422 211 1122456677777888999999999999999999888877666
Q ss_pred hHH
Q 002876 257 YIQ 259 (872)
Q Consensus 257 ~~~ 259 (872)
++.
T Consensus 204 fl~ 206 (232)
T 3jxy_A 204 YVQ 206 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 165
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=34.74 E-value=1.5e+02 Score=25.34 Aligned_cols=76 Identities=9% Similarity=0.031 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcC---CChhHHHHHHHHHHHHHH
Q 002876 792 PHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSS---DDHMIKESAEWAKLAISK 868 (872)
Q Consensus 792 ~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 868 (872)
...+..+.+.+.. ..+..+...|+.++..+.+++|..|...+-..+++..+|..+... ....+|+-+.-....-..
T Consensus 52 k~a~ral~krl~~-~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 52 KDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3566777777763 357888999999999999999999988777666666633333321 234666665544444333
No 166
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=33.44 E-value=16 Score=33.99 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002876 808 DDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAI 866 (872)
Q Consensus 808 ~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 866 (872)
.+-+|-++++.+|.+.+.-..+...|+-++++| ++.-+.++...+--|.+|.++...|
T Consensus 115 fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEii-plCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 115 FEYLRLTSLGVIGALVKTDEQEVINFLLTTEII-PLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHH-HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHhccCcHHHHHHHHhhhHH-HHHHHHHhhccHHHHHHHHHHHHHH
Confidence 456899999999999998666677887777754 4555577788999999999987765
No 167
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=33.20 E-value=2.8e+02 Score=25.20 Aligned_cols=129 Identities=8% Similarity=-0.039 Sum_probs=80.1
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhccCCChHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Q 002876 42 LAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLS-SPAHDARSTASQVVAKVA 120 (872)
Q Consensus 42 L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~ 120 (872)
++.-+.. +..-+.|.+|+.++...-.. +.++.... +-..+. -++..+.-..|.+++.++
T Consensus 59 ~~~~L~~-s~~~E~r~la~~~l~~~~~~---------------~~~~~l~~----~~~~l~~~~nWd~~D~~a~~~~~~~ 118 (220)
T 2b6c_A 59 EIEAYYQ-KTEREYQYVAIDLALQNVQR---------------FSLEEVVA----FKAYVPQKAWWDSVDAWRKFFGSWV 118 (220)
T ss_dssp HHHHHHT-SSSHHHHHHHHHHHHHTGGG---------------CCHHHHHH----GGGGTTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CchhHHHHHHHHHHHHHHhh---------------CCHHHHHH----HHHHhccCCcHHHHHHHHHHHHHHH
Confidence 3344443 23688999999888754321 22222211 112222 346777777777777776
Q ss_pred HhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Q 002876 121 GIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRAL 200 (872)
Q Consensus 121 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l 200 (872)
... | ..+.+.+..-+.+++..+|+.|+..+-.. ....+.+.+++.+-..+. |++.-||.+..-.|
T Consensus 119 ~~~-~----~~~~~~i~~W~~s~~~w~rR~ai~~~l~~--------~~~~~~~~~~~i~~~~~~--d~~~yV~kavgW~L 183 (220)
T 2b6c_A 119 ALH-L----TELPTIFALFYGAENFWNRRVALNLQLML--------KEKTNQDLLKKAIIYDRT--TEEFFIQKAIGWSL 183 (220)
T ss_dssp HHS-G----GGHHHHHHHHTTCSSHHHHHHHHHTTTTC--------GGGCCHHHHHHHHHHTTT--CCCHHHHHHHHHHH
T ss_pred HHC-h----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH--------HHCCCHHHHHHHHHHhCC--ChHHHHHHHHHHHH
Confidence 532 2 23667788888999999998887755211 113445666776666666 88999999999888
Q ss_pred HHhHh
Q 002876 201 YNALG 205 (872)
Q Consensus 201 ~~~~~ 205 (872)
..+..
T Consensus 184 r~~~k 188 (220)
T 2b6c_A 184 RQYSK 188 (220)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88543
No 168
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=32.90 E-value=1.7e+02 Score=24.51 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhcccc-------cc
Q 002876 95 SFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSD-------AV 167 (872)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~-------~l 167 (872)
..-++.|.+..+.+-....+.|+.+|..... ....++..+.+.+....+..|..+|.++..|++.. .. .+
T Consensus 8 ~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~--~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~-~~k~~~~~~~f 84 (145)
T 3d9j_A 8 NSELYSLNDYKPPISKAKMTQITKAAIKAIK--FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQS-RHQFGQEKDVF 84 (145)
T ss_dssp HHHHHGGGGSCSSCCHHHHHHHHHHHHHTGG--GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHH-HHHHCTTTCSH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHh-hhhcCCccccH
Q ss_pred chhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHh
Q 002876 168 EQDHVNKILTAVVQGMNASESNNDVRLAATRALYNA 203 (872)
Q Consensus 168 ~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~ 203 (872)
.+.+...++.++..+- ..++..|....+.+..|
T Consensus 85 -~~~F~~~L~~~f~~~~--~~~~~~r~kl~rLl~iW 117 (145)
T 3d9j_A 85 -APRFSNNIISTFQNLY--RCPGDDKSKIVRVLNLW 117 (145)
T ss_dssp -HHHHHHHHHHHHHHHT--SSCGGGHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHh
No 169
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.29 E-value=1.3e+02 Score=27.39 Aligned_cols=73 Identities=7% Similarity=-0.018 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002876 793 HILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAIS 867 (872)
Q Consensus 793 ~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 867 (872)
..+..+.+.+.. .+..+...|+.++..+.+.+|..|...+-..+++..+..-+....+..+++-+.-....-.
T Consensus 42 ~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 566677777774 6889999999999999999998887776666566666555555556777776554444433
No 170
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=30.92 E-value=2.2e+02 Score=23.37 Aligned_cols=105 Identities=9% Similarity=-0.143 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhc
Q 002876 604 QYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALED 683 (872)
Q Consensus 604 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 683 (872)
+-..++++.++..|++.|+.+...+...|.. +-..++|.+.+.+++.++. --.+++..++..++.
T Consensus 27 ~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~-----------~~~~l~p~I~~vl~s~D~~----W~ywil~~lv~~~~~ 91 (134)
T 3ut4_A 27 NEIEPIIFDLLKWLQDYNWPIAKDILPVVVL-----------HQSIAMPHILTILQGNDIM----WKYWVIKLMIPYLIY 91 (134)
T ss_dssp HHHHHHHHHHHGGGSCTTSTTHHHHHHHHHH-----------THHHHHHHHHHHHHSSCHH----HHHHHHHHHGGGCCH
T ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHH-----------ccHhhHHHHHHHHHcCChH----HHHHHHHHHHHcCCH
Q ss_pred cccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccc
Q 002876 684 KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 727 (872)
Q Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 727 (872)
.. ...+.+.+.++..++. ..+..+.+-..--++...++.+
T Consensus 92 ~~---~~~l~~eL~rl~~~pt-~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 92 PN---KQLVKSELERLSSLEI-INEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp HH---HHHHHHHHHHHHTCCC-SSGGGHHHHHHHHHHHHHHC--
T ss_pred HH---HHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHHHccc
No 171
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=23.64 E-value=1e+03 Score=28.58 Aligned_cols=159 Identities=10% Similarity=-0.000 Sum_probs=92.8
Q ss_pred ccccccHHHHHHHHHHHccCCCCCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHH
Q 002876 683 DKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNS 762 (872)
Q Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~ 762 (872)
.-+..|.+.++...-.++.+. +..++..+......+....+ . .|=..++..|...+.... . . .
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~--~~~v~~Fg~~lY~~lF~~fd-~--~~qqeVl~~Lv~hi~sg~------~----~--e 454 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQ--DQRIILFGSLLYKYAFKFFD-T--YCQQEVVGALVTHVCSGT------E----A--E 454 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSSC-H--HHHHHHHHHHHHHHHHCC------H----H--H
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcc-c--hhHHHHHHHHHhhhcCCC------c----H--H
Confidence 346678888888777777776 44555544444444444332 1 234567878877665431 1 1 1
Q ss_pred HHHHHHHHHHHHhhcccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHH
Q 002876 763 LRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKD 842 (872)
Q Consensus 763 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~ 842 (872)
+ ..+++.+..+... .+..+.||...+ ..+...+.+ .+..=.+..+..++.++..-+.+....+... +.-
T Consensus 455 V-d~ALdvL~~L~~~-----~~~~l~~~a~~l-~giLD~l~~--l~~~QiRklf~iL~~laf~~~~~~~~~i~dd--l~i 523 (1323)
T 3s4w_B 455 V-DTALDVLLELIVL-----NASAMRLNAAFV-KGILDYLEN--MSPQQIRKIFCILSTLAFSQQPGTSNHIQDD--MHL 523 (1323)
T ss_dssp H-HHHHHHHHHHHHH-----CHHHHHHTHHHH-HGGGGGGGG--CCHHHHHHHHHHHHHHHHHHCSSCCCHHHHH--HHH
T ss_pred H-HHHHHHHHHHHhc-----CHHHHhHHHHHH-HHHHHhhcC--CCHHHHHHHHHHHHHHHcCCCCCcchhhHHh--HHH
Confidence 1 2256666666654 455666765533 333334443 3444444449999998876654422122221 777
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHH
Q 002876 843 FLNECLSSDDHMIKESAEWAKLAISKA 869 (872)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (872)
+++.-.++.+.+.|..+.-+.-.+-+.
T Consensus 524 vIRKQLs~~~~~~KriGIIGav~~v~~ 550 (1323)
T 3s4w_B 524 VIRKQLSSTVFKYKLIGIIGAVTMAGI 550 (1323)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCchhhhhhhHHHHHHHHHH
Confidence 888888889999988887666555443
No 172
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=21.09 E-value=1.5e+02 Score=24.39 Aligned_cols=73 Identities=7% Similarity=0.027 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh---hhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002876 603 MQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYAT---GQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVG 675 (872)
Q Consensus 603 ~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 675 (872)
..+.+.++..+.+.+......-+-..+..+..++..+ |..+.+.+...+|.++...-...+.+.+.....++.
T Consensus 34 ~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~ 109 (135)
T 4fu3_A 34 RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLN 109 (135)
T ss_dssp GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
No 173
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.85 E-value=2.3e+02 Score=23.96 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhc-cccchhhHHHHHHHHHHHHhhhhhHhhhH--HHHHH-HHhhhcCC--ChhhHHHHHHHHHHHHHHHH
Q 002876 608 QMMGLFLRVFAI-RSATAHEEAMLAIGALAYATGQDFLKYMP--EFYKY-VEMGLQNF--EDYQVCAITVGVVGDLCRAL 681 (872)
Q Consensus 608 ~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~-l~~~l~~~--~~~~v~~~a~~~l~~l~~~~ 681 (872)
..+..+..-++. .+..+.-.|+..|..+++.+|..|...+. .++.- +.+.+... ....|+..++.++......+
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 344445555553 35555567899999999999998876553 45553 55555432 22368999999988888766
Q ss_pred h
Q 002876 682 E 682 (872)
Q Consensus 682 ~ 682 (872)
+
T Consensus 133 ~ 133 (152)
T 3rru_A 133 P 133 (152)
T ss_dssp S
T ss_pred C
Confidence 5
No 174
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.70 E-value=3.4e+02 Score=22.02 Aligned_cols=66 Identities=6% Similarity=0.100 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccC-ChhHHHHHHHHHHHHH
Q 002876 407 VNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKD-VPNVAEKACGALYFLA 485 (872)
Q Consensus 407 ~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
....+...+..| +.....++..+.|++... .+...++..+.+.+.. .+.-+......+..++
T Consensus 6 ~e~~l~~~L~~L-~~s~~sI~~~s~w~l~h~----------------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl 68 (132)
T 4flb_A 6 LESSLDRKFQSV-TNTMESIQGLSSWCIENK----------------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVI 68 (132)
T ss_dssp HHHHHHHHHHHC-CSSHHHHHHHHHHHHHTG----------------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cccHHHHHHHHHHHHHhH----------------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 445566677788 888888888888887632 2234677777777764 5666778888888888
Q ss_pred Hhcc
Q 002876 486 QGFE 489 (872)
Q Consensus 486 ~~~~ 489 (872)
.++.
T Consensus 69 ~ns~ 72 (132)
T 4flb_A 69 QNCK 72 (132)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 8763
Done!