BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002877
(872 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 346/886 (39%), Positives = 493/886 (55%), Gaps = 49/886 (5%)
Query: 3 MEITQFLLAAQSADANIRNEAEANLRQLQQ---QNLPGFLLSLSVELVNNEKPTESRRLA 59
ME+ L S D R E EA + L++ +NLP FL+ LS L N +R A
Sbjct: 1 MELITILEKTVSPD---RLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAA 57
Query: 60 GIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSA-QVIAK 118
G+ +KNSL +KD K ++WLAID + + +VK+ +L+TL + R +SA Q +A
Sbjct: 58 GLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET--YRPSSASQCVAG 115
Query: 119 IASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVL 178
IA EIP QWPELI L+ N+T +S +K++TLE +GY+C++I + L QD+ N +L
Sbjct: 116 IACAEIPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEIL 174
Query: 179 TAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR 238
TA++QGM E S V+LAAT AL N+L+F NF E ER++IM+VVCE + + +R
Sbjct: 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR 234
Query: 239 QAAFECLVSIASTYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQ 297
AA + LV I S YY+ +E YM LF +T A+K D + VALQ +EFWS++CDEE++L
Sbjct: 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA 294
Query: 298 EFENPETGDSDSPNYH----FIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTC 353
E E + P H + + A LVP+ WN A G C
Sbjct: 295 -IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD--DDWNPCKAAGVC 351
Query: 354 LGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413
L L++ D++VP V+PF++ +I DWR R+AA AFGS+LEGP ++L PLV
Sbjct: 352 LMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMP 411
Query: 414 FLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNV 473
L+ M+D + V+DTTAWT+ RI ELL A ++P +L L+E + P V
Sbjct: 412 TLIELMKDPSVVVRDTTAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRV 466
Query: 474 AEKVCGAIYYLAQG-YE--DAGXXXXXXXXYLTS-----IIAELLRAADRTDVGGSKLRS 525
A VC A LA+ YE D Y S I+ +LL DR D + LRS
Sbjct: 467 ASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526
Query: 526 AAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLC 583
+AYE+L E+V+ ++ + + + IM RL Q L+++ I S+ DR + DLQ+ LC
Sbjct: 527 SAYESLMEIVK-NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 584 GVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATG 641
LQ +++K DA LQ +D +M LR+F S V E+A++A+ L G
Sbjct: 586 ATLQNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640
Query: 642 PEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXX 701
EF KYM F +L +GL+N EYQVC VG+VGD+CRAL +LPFCD +M
Sbjct: 641 GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENL 700
Query: 702 XXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYG 761
RSVKP ILS FGDIALAIG F+KY+ L +Q+A++ AQ+D D +++DY
Sbjct: 701 GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ--AQVDKSDFDMVDYL 758
Query: 762 NQLRSSIFEAYSGILQGFK----SARAEVMM--PYAQHLLQFIELIFKDNHRDENVTKAA 815
N+LR S EAY+GI+QG K + +VM+ P + +L FI+ I D + V A
Sbjct: 759 NELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACA 818
Query: 816 VAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGW 861
++GDL A G + L + ++ ++E RS + K A W
Sbjct: 819 AGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATW 864
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 553 bits (1425), Expect = e-157, Method: Compositional matrix adjust.
Identities = 344/886 (38%), Positives = 490/886 (55%), Gaps = 49/886 (5%)
Query: 3 MEITQFLLAAQSADANIRNEAEANLRQLQQ---QNLPGFLLSLSVELVNNEKPTESRRLA 59
ME+ L S D R E EA + L++ +NLP FL+ LS L N +R A
Sbjct: 1 MELITILEKTVSPD---RLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAA 57
Query: 60 GIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSA-QVIAK 118
G+ +KNSL +KD K ++WLAID + + +VK+ +L+TL + R +SA Q +A
Sbjct: 58 GLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET--YRPSSASQCVAG 115
Query: 119 IASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVL 178
IA EIP QWPELI L+ N+T +S +K++TLE +GY+C++I + L QD+ N +L
Sbjct: 116 IACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEIL 174
Query: 179 TAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR 238
TA++QGM E S V+LAAT AL N+L+F NF E ER++IM+VVCE + + +R
Sbjct: 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR 234
Query: 239 QAAFECLVSIASTYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQ 297
AA + LV I S YY+ +E YM LF +T A+K D + VALQ +EFWS++CDEE++L
Sbjct: 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA 294
Query: 298 EFENPETGDSDSPNYH----FIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTC 353
E E + P H + + A LVP+ WN A G C
Sbjct: 295 -IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD--DDWNPCKAAGVC 351
Query: 354 LGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413
L L+A D++VP V+PF++ +I DWR R+AA AFG +LEGP +L PLV
Sbjct: 352 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411
Query: 414 FLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNV 473
L+ M+D + V+DT AWT+ RI ELL A ++P +L L+E + P V
Sbjct: 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRV 466
Query: 474 AEKVCGAIYYLAQG-YE--DAGXXXXXXXXYLTS-----IIAELLRAADRTDVGGSKLRS 525
A VC A LA+ YE D Y S I+ +LL DR D + LRS
Sbjct: 467 ASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526
Query: 526 AAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLC 583
+AYE+L E+V+ ++ + + + IM RL Q L+++ I S+ DR + DLQ+ LC
Sbjct: 527 SAYESLMEIVK-NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 584 GVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATG 641
LQ +++K DA LQ +D +M LR+F S V E+A++A+ L G
Sbjct: 586 ATLQNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640
Query: 642 PEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXX 701
EF KYM F +L +GL+N EYQVC VG+VGD+CRAL ++PFCD +M
Sbjct: 641 GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENL 700
Query: 702 XXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYG 761
RSVKP ILS FGDIALAIG F+KY+ L +Q+A++ AQ+D D +++DY
Sbjct: 701 GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ--AQVDKSDYDMVDYL 758
Query: 762 NQLRSSIFEAYSGILQGFK----SARAEVMM--PYAQHLLQFIELIFKDNHRDENVTKAA 815
N+LR S EAY+GI+QG K + +VM+ P + +L FI+ I D + V A
Sbjct: 759 NELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACA 818
Query: 816 VAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGW 861
++GDL A G + L + ++ ++E RS + K A W
Sbjct: 819 AGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATW 864
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 344/886 (38%), Positives = 489/886 (55%), Gaps = 49/886 (5%)
Query: 3 MEITQFLLAAQSADANIRNEAEANLRQLQQ---QNLPGFLLSLSVELVNNEKPTESRRLA 59
ME+ L S D R E EA + L++ +NLP FL+ LS L N +R A
Sbjct: 1 MELITILEKTVSPD---RLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAA 57
Query: 60 GIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSA-QVIAK 118
G+ +KNSL +KD K ++WLAID + + +VK+ +L TL + R +SA Q +A
Sbjct: 58 GLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQCVAG 115
Query: 119 IASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVL 178
IA EIP QWPELI L+ N+T +S +K++TLE +GY+C++I + L QD+ N +L
Sbjct: 116 IACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEIL 174
Query: 179 TAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR 238
TA++QGM E S V+LAAT AL N+L+F NF E ER++IM+VVCE + + +R
Sbjct: 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR 234
Query: 239 QAAFECLVSIASTYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQ 297
AA + LV I S YY+ +E YM LF +T A+K D + VALQ +EFWS++CDEE++L
Sbjct: 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA 294
Query: 298 EFENPETGDSDSPNYH----FIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTC 353
E E + P H + + A LVP+ WN A G C
Sbjct: 295 -IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD--DDWNPCKAAGVC 351
Query: 354 LGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413
L L+A D++VP V+PF++ +I DWR R+AA AFG +LEGP +L PLV
Sbjct: 352 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411
Query: 414 FLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNV 473
L+ M+D + V+DT AWT+ RI ELL A ++P +L L+E + P V
Sbjct: 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRV 466
Query: 474 AEKVCGAIYYLAQG-YE--DAGXXXXXXXXYLTS-----IIAELLRAADRTDVGGSKLRS 525
A VC A LA+ YE D Y S I+ +LL DR D + LRS
Sbjct: 467 ASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526
Query: 526 AAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLC 583
+AYE+L E+V+ ++ + + + IM RL Q L+++ I S+ DR + DLQ+ LC
Sbjct: 527 SAYESLMEIVK-NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 584 GVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATG 641
LQ +++K DA LQ +D +M LR+F S V E+A++A+ L G
Sbjct: 586 ATLQNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640
Query: 642 PEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXX 701
EF KYM F +L +GL+N EYQVC VG+VGD+CRAL ++PFCD +M
Sbjct: 641 GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENL 700
Query: 702 XXXXXXRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYG 761
RSVKP ILS FGDIALAIG F+KY+ L +Q+A++ AQ+D D +++DY
Sbjct: 701 GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ--AQVDKSDYDMVDYL 758
Query: 762 NQLRSSIFEAYSGILQGFK----SARAEVMM--PYAQHLLQFIELIFKDNHRDENVTKAA 815
N+LR S EAY+GI+QG K + +VM+ P + +L FI+ I D + V A
Sbjct: 759 NELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACA 818
Query: 816 VAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGW 861
++GDL A G + L + ++ ++E RS + K A W
Sbjct: 819 AGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARW 864
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust.
Identities = 293/755 (38%), Positives = 418/755 (55%), Gaps = 40/755 (5%)
Query: 130 PELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAE 189
PELI L+ N+T +S +K++TLE +GY+C++I + L QD+ N +LTA++QGM E
Sbjct: 2 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEE 60
Query: 190 HSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIA 249
S V+LAAT AL N+L+F NF E ER++IM+VVCE + + +R AA + LV I
Sbjct: 61 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 120
Query: 250 STYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSD 308
S YY+ +E YM LF +T A+K D + VALQ +EFWS++CDEE++L E E +
Sbjct: 121 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA-IEASEAAEQG 179
Query: 309 SPNYH----FIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTCLGLVARTVGDE 364
P H + + A LVP+ WN A G CL L+A D+
Sbjct: 180 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD--DDWNPCKAAGVCLMLLATCCEDD 237
Query: 365 VVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENN 424
+VP V+PF++ +I DWR R+AA AFG +LEGP +L PLV L+ M+D +
Sbjct: 238 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 297
Query: 425 HVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYL 484
V+DT AWT+ RI ELL A ++P +L L+E + P VA VC A L
Sbjct: 298 VVRDTAAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRVASNVCWAFSSL 352
Query: 485 AQG-YE--DAGXXXXXXXXYLTS-----IIAELLRAADRTDVGGSKLRSAAYETLNEVVR 536
A+ YE D Y S I+ +LL DR D + LRS+AYE+L E+V+
Sbjct: 353 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 412
Query: 537 CSNITETSQIIAELLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFS 594
++ + + + IM RL Q L+++ I S+ DR + DLQ+ LC LQ +++K
Sbjct: 413 -NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ 471
Query: 595 STDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFY 652
DA LQ +D +M LR+F S V E+A++A+ L G EF KYM F
Sbjct: 472 HQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFK 526
Query: 653 QYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKP 712
+L +GL+N EYQVC VG+VGD+CRAL ++PFCD +M RSVKP
Sbjct: 527 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKP 586
Query: 713 PILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAY 772
ILS FGDIALAIG F+KY+ L +Q+A++ AQ+D D +++DY N+LR S EAY
Sbjct: 587 QILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ--AQVDKSDYDMVDYLNELRESCLEAY 644
Query: 773 SGILQGFK----SARAEVMM--PYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADAL 826
+GI+QG K + +VM+ P + +L FI+ I D + V A ++GDL A
Sbjct: 645 TGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 704
Query: 827 GPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGW 861
G + L + ++ ++E RS + K A W
Sbjct: 705 GKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATW 739
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 274/873 (31%), Positives = 438/873 (50%), Gaps = 45/873 (5%)
Query: 14 SADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDAT 73
S D NIR +E L++L N F S L++ E R LA + LKN L +KD+
Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75
Query: 74 TKEDLAKQWLA-IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPEL 132
+ A++W+ + K+Q+K L L S P + +AQ+IA IA IE+P WPEL
Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPEL 135
Query: 133 IRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQD--LVQDEVNAVLTAVVQGMNLAEH 190
++ +++N T + +K+A+L LGY+CE Q LV N +L A+VQG E
Sbjct: 136 MKIMVDN-TGAEQPENVKRASLLALGYMCESADPQSQALVSSS-NNILIAIVQGAQSTET 193
Query: 191 SAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAS 250
S VRLAA AL ++L F N + E ERNY+M+VVCE +++++E++ AAF CL I S
Sbjct: 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253
Query: 251 TYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDS 309
YY ++PYM Q L+ LT +K + VA VEFWS+IC+EEI++ +E + S
Sbjct: 254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI-AYELAQFPQSPL 312
Query: 310 PNYHFIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTCLGLVARTVGDEVVPLV 369
+Y+F + +VP WN+SM+ G CL L A+ G+ ++ V
Sbjct: 313 QSYNFALSSIKDVVP--NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPV 370
Query: 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDT 429
+ FVE NI +WR REAA AFGS+++GP + VH +LN M D++ VK+T
Sbjct: 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKET 430
Query: 430 TAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYE 489
TAW + RI + + S+ ++L ++ L ++D P VA I L +
Sbjct: 431 TAWCIGRIAD-----SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLA 485
Query: 490 DAGXXXXXXXXYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVR--CSNITETSQII 547
+A + +++ L+ AA+R D R++A+ L +V + ETS I
Sbjct: 486 EA--TPSPIYNFYPALVDGLIGAANRID-NEFNARASAFSALTTMVEYATDTVAETSASI 542
Query: 548 AELLPAIMGRLGQTLEL--QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQ 605
+ +M +LGQT+ + ++ +D + +LQ+++ VL +I+K + S +
Sbjct: 543 STF---VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK------SPSSVEP 593
Query: 606 TADQIMVLFLRVFACRSST-VHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEE 664
AD +M LF R+ + S + ++ AI ALA + G F KY+ F YL L N +
Sbjct: 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL-NQVD 652
Query: 665 YQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKPPILSCFGDIALA 724
V VG + D+ +L++ + D +M R +KP +LS FGDIA
Sbjct: 653 SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712
Query: 725 IGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARA 784
IG F Y+ + + A + + E +DY ++ ++ +AY GI+ G +
Sbjct: 713 IGADFIPYLNDIMALC--VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD-KP 769
Query: 785 EVMMPYAQHLLQFIELIFKDN--HRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCND 842
E + PY + QFI + +D + ++ ++AAV ++GD+A + F + D
Sbjct: 770 EALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVID 829
Query: 843 FMSECLRSDDEQL-----KETAGWTQGMINRVL 870
++ R+ QL K+TA W + R L
Sbjct: 830 YIK---RTRSGQLFSQATKDTARWAREQQKRQL 859
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 274/873 (31%), Positives = 438/873 (50%), Gaps = 45/873 (5%)
Query: 14 SADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDAT 73
S D NIR +E L++L N F S L++ E R LA + LKN L +KD+
Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75
Query: 74 TKEDLAKQWLA-IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPEL 132
+ A++W+ + K+Q+K L L S P + +AQ+IA IA IE+P WPEL
Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPEL 135
Query: 133 IRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQD--LVQDEVNAVLTAVVQGMNLAEH 190
++ +++N T + +K+A+L LGY+CE Q LV N +L A+VQG E
Sbjct: 136 MKIMVDN-TGAEQPENVKRASLLALGYMCESADPQSQALVSSS-NNILIAIVQGAQSTET 193
Query: 191 SAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAS 250
S VRLAA AL ++L F N + E ERNY+M+VVCE +++++E++ AAF CL I S
Sbjct: 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253
Query: 251 TYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDS 309
YY ++PYM Q L+ LT +K + VA VEFWS+IC+EEI++ +E + S
Sbjct: 254 LYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI-AYELAQFPQSPL 312
Query: 310 PNYHFIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTCLGLVARTVGDEVVPLV 369
+Y+F + +VP WN+SM+ G CL L A+ G+ ++ V
Sbjct: 313 QSYNFALSSIKDVVP--NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPV 370
Query: 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDT 429
+ FVE NI +WR REAA AFGS+++GP + VH +LN M D++ VK+T
Sbjct: 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKET 430
Query: 430 TAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYE 489
TAW + RI + + S+ ++L ++ L ++D P VA I L +
Sbjct: 431 TAWCIGRIAD-----SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLA 485
Query: 490 DAGXXXXXXXXYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVR--CSNITETSQII 547
+A + +++ L+ AA+R D R++A+ L +V + ETS I
Sbjct: 486 EA--TPSPIYNFYPALVDGLIGAANRID-NEFNARASAFSALTTMVEYATDTVAETSASI 542
Query: 548 AELLPAIMGRLGQTLEL--QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQ 605
+ +M +LGQT+ + ++ +D + +LQ+++ VL +I+K + S +
Sbjct: 543 STF---VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK------SPSSVEP 593
Query: 606 TADQIMVLFLRVFACRSST-VHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEE 664
AD +M LF R+ + S + ++ AI ALA + G F KY+ F YL L N +
Sbjct: 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL-NQVD 652
Query: 665 YQVCAITVGVVGDVCRALDDKVLPFCDGIMXXXXXXXXXXXXXRSVKPPILSCFGDIALA 724
V VG + D+ +L++ + D +M R +KP +LS FGDIA
Sbjct: 653 SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712
Query: 725 IGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARA 784
IG F Y+ + + A + + E +DY ++ ++ +AY GI+ G +
Sbjct: 713 IGADFIPYLNDIMALC--VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD-KP 769
Query: 785 EVMMPYAQHLLQFIELIFKDN--HRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCND 842
E + PY + QFI + +D + ++ ++AAV ++GD+A + F + D
Sbjct: 770 EALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVID 829
Query: 843 FMSECLRSDDEQL-----KETAGWTQGMINRVL 870
++ R+ QL K+TA W + R L
Sbjct: 830 YIK---RTRSGQLFSQATKDTARWAREQQKRQL 859
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 327 bits (837), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 201/499 (40%), Positives = 282/499 (56%), Gaps = 24/499 (4%)
Query: 3 MEITQFLLAAQSADANIRNEAEANLRQLQQ---QNLPGFLLSLSVELVNNEKPTESRRLA 59
ME+ L S D R E EA + L++ +NLP FL+ LS L N +R A
Sbjct: 1 MELITILEKTVSPD---RLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAA 57
Query: 60 GIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSA-QVIAK 118
G+ +KNSL +KD K ++WLAID + + +VK+ +L+TL + R +SA Q +A
Sbjct: 58 GLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET--YRPSSASQCVAG 115
Query: 119 IASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVL 178
IA EIP QWPELI L+ N+T +S +K++TLE +GY+C++I + L QD+ N +L
Sbjct: 116 IACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEIL 174
Query: 179 TAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR 238
TA++QGM E S V+LAAT AL N+L+F NF E ER++IM+VVCE + + +R
Sbjct: 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR 234
Query: 239 QAAFECLVSIASTYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQ 297
AA + LV I S YY+ +E YM LF +T A+K D + VALQ +EFWS++CDEE++L
Sbjct: 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA 294
Query: 298 EFENPETGDSDSPNYH----FIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTC 353
E E + P H + + A LVP+ WN A G C
Sbjct: 295 -IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD--DDWNPCKAAGVC 351
Query: 354 LGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413
L L+A D++VP V+PF++ +I DWR R+AA AFG +LEGP +L PLV
Sbjct: 352 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411
Query: 414 FLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNV 473
L+ M+D + V+DT AWT+ RI ELL A ++P +L L+E + P V
Sbjct: 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRV 466
Query: 474 AEKVCGAIYYLAQ-GYEDA 491
A VC A LA+ YE A
Sbjct: 467 ASNVCWAFSSLAEAAYEAA 485
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 314 bits (804), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 185/448 (41%), Positives = 260/448 (58%), Gaps = 18/448 (4%)
Query: 3 MEITQFLLAAQSADANIRNEAEANLRQLQQ---QNLPGFLLSLSVELVNNEKPTESRRLA 59
ME+ L S D R E EA + L++ +NLP FL+ LS L N +R A
Sbjct: 1 MELITILEKTVSPD---RLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAA 57
Query: 60 GIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSA-QVIAK 118
G+ +KNSL +KD K ++WLAID + + +VK+ +L+TL + R +SA Q +A
Sbjct: 58 GLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET--YRPSSASQCVAG 115
Query: 119 IASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVL 178
IA EIP QWPELI L+ N+T +S +K++TLE +GY+C++I + L QD+ N +L
Sbjct: 116 IACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEIL 174
Query: 179 TAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR 238
TA++QGM E S V+LAAT AL N+L+F NF E ER++IM+VVCE + + +R
Sbjct: 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR 234
Query: 239 QAAFECLVSIASTYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQ 297
AA + LV I S YY+ +E YM LF +T A+K D + VALQ +EFWS++CDEE++L
Sbjct: 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA 294
Query: 298 EFENPETGDSDSPNYH----FIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTC 353
E E + P H + + A LVP+ WN A G C
Sbjct: 295 -IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD--DDWNPCKAAGVC 351
Query: 354 LGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413
L L+A D++VP V+PF++ +I DWR R+AA AFG +LEGP +L PLV
Sbjct: 352 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411
Query: 414 FLLNAMRDENNHVKDTTAWTLSRIFELL 441
L+ M+D + V+DT AWT+ RI ELL
Sbjct: 412 TLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 313 bits (803), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 185/448 (41%), Positives = 259/448 (57%), Gaps = 18/448 (4%)
Query: 3 MEITQFLLAAQSADANIRNEAEANLRQLQQ---QNLPGFLLSLSVELVNNEKPTESRRLA 59
ME+ L S D R E EA + L++ +NLP FL+ LS L N +R A
Sbjct: 1 MELITILEKTVSPD---RLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAA 57
Query: 60 GIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSA-QVIAK 118
G+ +KNSL +KD K ++WLAID + + +VK+ +L TL + R +SA Q +A
Sbjct: 58 GLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQCVAG 115
Query: 119 IASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVL 178
IA EIP QWPELI L+ N+T +S +K++TLE +GY+C++I + L QD+ N +L
Sbjct: 116 IACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEIL 174
Query: 179 TAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR 238
TA++QGM E S V+LAAT AL N+L+F NF E ER++IM+VVCE + + +R
Sbjct: 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR 234
Query: 239 QAAFECLVSIASTYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQ 297
AA + LV I S YY+ +E YM LF +T A+K D + VALQ +EFWS++CDEE++L
Sbjct: 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA 294
Query: 298 EFENPETGDSDSPNYH----FIEKARSSLVPMXXXXXXXXXXXXXXXXSIWNISMAGGTC 353
E E + P H + + A LVP+ WN A G C
Sbjct: 295 -IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD--DDWNPCKAAGVC 351
Query: 354 LGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413
L L+A D++VP V+PF++ +I DWR R+AA AFG +LEGP +L PLV
Sbjct: 352 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411
Query: 414 FLLNAMRDENNHVKDTTAWTLSRIFELL 441
L+ M+D + V+DT AWT+ RI ELL
Sbjct: 412 TLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 172/415 (41%), Positives = 241/415 (58%), Gaps = 12/415 (2%)
Query: 33 QNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQ 92
+NLP FL+ LS L N +R AG+ +KNSL +KD K ++WLAID + + +
Sbjct: 37 ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARRE 96
Query: 93 VKDLLLRTLASPVPEARHTSA-QVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQ 151
VK+ +L+TL + R +SA Q +A IA EIP QWPELI L+ N+T +S K+
Sbjct: 97 VKNYVLQTLGTET--YRPSSASQCVAGIACAEIPVSQWPELIPQLVANVTNPNSTEHXKE 154
Query: 152 ATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALT 211
+TLE +GY+C++I + L QD+ N +LTA++QG E S V+LAAT AL N+L+F
Sbjct: 155 STLEAIGYICQDIDPEQL-QDKSNEILTAIIQGXRKEEPSNNVKLAATNALLNSLEFTKA 213
Query: 212 NFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYM-QTLFELTSNA 270
NF E ER++I +VVCE + + +R AA + LV I S YY+ E Y LF +T A
Sbjct: 214 NFDKESERHFIXQVVCEATQCPDTRVRVAALQNLVKIXSLYYQYXETYXGPALFAITIEA 273
Query: 271 VKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYH----FIEKARSSLVPMX 326
K D + VALQ +EFWS++CDEE +L E E + P H + + A LVP+
Sbjct: 274 XKSDIDEVALQGIEFWSNVCDEEXDLA-IEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 332
Query: 327 XXXXXXXXXXXXXXXSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCRE 386
WN A G CL L++ D++VP V+PF++ +I DWR R+
Sbjct: 333 TQTLTKQDENDDD--DDWNPCKAAGVCLXLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRD 390
Query: 387 AATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELL 441
AA AFGS+LEGP ++L PLV L+ +D + V+DTTAWT+ RI ELL
Sbjct: 391 AAVXAFGSILEGPEPNQLKPLVIQAXPTLIELXKDPSVVVRDTTAWTVGRICELL 445
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 108/496 (21%), Positives = 198/496 (39%), Gaps = 67/496 (13%)
Query: 12 AQSADANIRNEAEANLRQLQQ-QNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAK 70
+QS D I+ + L QL Q + +L+ + +L + ++PT R L+G++LKN++ A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT--RSLSGLILKNNVKAH 79
Query: 71 DATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWP 130
+ +K L + P R T +I IAS + + WP
Sbjct: 80 FQNFPNGVT-----------DFIKSECLNNIGDSSPLIRATVGILITTIAS-KGELQNWP 127
Query: 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCE---EISHQDLVQDEVNAVLTAVVQGMNL 187
+L+ L + + +D + L +CE EI D++ +N ++ +Q
Sbjct: 128 DLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ---F 182
Query: 188 AEHSAEVRLAATRALYNALDFALTNFQNEM-ERNYIMKVVCETAKSKEVEIRQAAFECLV 246
+HS+ + A N F ++ Q M + ++ + A +E E+R+ LV
Sbjct: 183 FKHSSPKIRSHAVACVN--QFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 SIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGD 306
+ + L P+M + E + +E VAL+A EFW ++ E P D
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA---------EQPICKD 291
Query: 307 SDSPNYHFIEKARSSLVPMXXXXXXXXXXXXXX-------------XXSIWNISMAGGTC 353
+ + L+P+ S WN+
Sbjct: 292 -------VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAA 344
Query: 354 LGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413
L ++A DE++P ++P ++ + +W +E+ G++ EG + + P +
Sbjct: 345 LDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG-CMQGMIPYLPELIP 403
Query: 414 FLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPEN--LQRILTVLLESIKDA- 470
L+ + D+ V+ T WTLSR + V P + L+ ++T LL+ I D+
Sbjct: 404 HLIQCLSDKKALVRSITCWTLSRY--------AHWVVSQPPDTYLKPLMTELLKRILDSN 455
Query: 471 PNVAEKVCGAIYYLAQ 486
V E C A L +
Sbjct: 456 KRVQEAACSAFATLEE 471
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 109/518 (21%), Positives = 204/518 (39%), Gaps = 73/518 (14%)
Query: 12 AQSADANIRNEAEANLRQLQQ-QNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAK 70
+QS D I+ + L QL Q + +L+ + +L + ++PT R L+G++LKN++ A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT--RSLSGLILKNNVKAH 79
Query: 71 DATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWP 130
+ +K L + P R T +I IAS + + WP
Sbjct: 80 FQNFPNGVT-----------DFIKSECLNNIGDSSPLIRATVGILITTIAS-KGELQNWP 127
Query: 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCE---EISHQDLVQDEVNAVLTAVVQGMNL 187
+L+ L + + +D + L +CE EI D++ +N ++ +Q
Sbjct: 128 DLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ---F 182
Query: 188 AEHSAEVRLAATRALYNALDFALTNFQNEM-ERNYIMKVVCETAKSKEVEIRQAAFECLV 246
+HS+ + A N F ++ Q M + ++ + A +E E+R+ LV
Sbjct: 183 FKHSSPKIRSHAVACVN--QFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 SIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEI------------ 294
+ + L P+M + E + +E VAL+A EFW ++ ++ I
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 295 --------------------ELQEFEN-PETGDSDSPNYHFIEKARSSLVPMXXXXXXXX 333
+++E E P++ P +H
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 334 XXXXXXXXSI--WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYA 391
+I WN+ L ++A DE++P ++P ++ + +W +E+
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 420
Query: 392 FGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVI 451
G++ EG + + P + L+ + D+ V+ T WTLSR + V
Sbjct: 421 LGAIAEG-CMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRY--------AHWVVS 471
Query: 452 SPEN--LQRILTVLLESIKDA-PNVAEKVCGAIYYLAQ 486
P + L+ ++T LL+ I D+ V E C A L +
Sbjct: 472 QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 509
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 103/497 (20%), Positives = 191/497 (38%), Gaps = 76/497 (15%)
Query: 12 AQSADANIRNEAEANLRQLQQ-QNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAK 70
+QS D I+ + L QL Q + +L+ + +L + ++PT R L+G++LKN++ A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT--RSLSGLILKNNVKAH 79
Query: 71 DATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWP 130
+ +K L + P R T +I IAS + + WP
Sbjct: 80 FQNFPNGVT-----------DFIKSECLNNIGDSSPLIRATVGILITTIAS-KGELQNWP 127
Query: 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCE---EISHQDLVQDEVNAVLTAVVQGMNL 187
+L+ L + + +D + L +CE EI D++ +N + +Q
Sbjct: 128 DLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAEILDSDVLDRPLNIXIPKFLQ---F 182
Query: 188 AEHSAEVRLAATRALYNALDFALTNFQN-EMERNYIMKVVCETAKSKEVEIRQAAFECLV 246
+HS+ + A N F ++ Q + + + + A +E E+R+ LV
Sbjct: 183 FKHSSPKIRSHAVACVN--QFIISRTQALXLHIDSFTENLFALAGDEEPEVRKNVCRALV 240
Query: 247 SIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEI------------ 294
+ + L P+ + E + +E VAL+A EFW ++ ++ I
Sbjct: 241 XLLEVRMDRLLPHXHNIVEYXLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 295 --------------------ELQEFEN-PETGDSDSPNYHFIEKARSSLVPMXXXXXXXX 333
+++E E P++ P +H
Sbjct: 301 IPVLVNGXKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 334 XXXXXXXXSI--WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYA 391
+I WN+ L ++A DE++P ++P ++ + +W +E+
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 420
Query: 392 FGSVLEG------PTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELL--HC 443
G++ EG P + +L P L+ + D+ V+ T WTLSR +
Sbjct: 421 LGAIAEGCXQGXIPYLPELIP-------HLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 473
Query: 444 PATGFSVISPENLQRIL 460
P T + E L+RIL
Sbjct: 474 PDTYLKPLXTELLKRIL 490
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 26/288 (9%)
Query: 12 AQSADANIRNEAEANLRQLQQ-QNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAK 70
+QS D I+ + L QL Q + +L+ + +L + ++PT R L+G++LKN++ A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT--RSLSGLILKNNVKAH 79
Query: 71 DATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWP 130
+ +K L + P R T +I IAS + + WP
Sbjct: 80 FQNFPNGVT-----------DFIKSECLNNIGDSSPLIRATVGILITTIAS-KGELQNWP 127
Query: 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCE---EISHQDLVQDEVNAVLTAVVQGMNL 187
+L+ L + + +D + L +CE EI D++ +N ++ +Q
Sbjct: 128 DLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ---F 182
Query: 188 AEHSAEVRLAATRALYNALDFALTNFQNEM-ERNYIMKVVCETAKSKEVEIRQAAFECLV 246
+HS+ + A N F ++ Q M + ++ + A +E E+R+ LV
Sbjct: 183 FKHSSPKIRSHAVACVN--QFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 SIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEI 294
+ + L P+M + E + +E VAL+A EFW ++ ++ I
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 342 SIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTI 401
S WN+ L ++A DE++P ++P ++ + +W +E+ G++ EG +
Sbjct: 346 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG-CM 404
Query: 402 DKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPEN--LQRI 459
+ P + L+ + D+ V+ T WTLSR + V P + L+ +
Sbjct: 405 QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRY--------AHWVVSQPPDTYLKPL 456
Query: 460 LTVLLESIKDA-PNVAEKVCGAIYYLAQ 486
+T LL+ I D+ V E C A L +
Sbjct: 457 MTELLKRILDSNKRVQEAACSAFATLEE 484
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++AA +A + G T++++ LVH G + L+N + ++ +
Sbjct: 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 437
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 438 QVILDAISNIFQ 449
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 308 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 367
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 368 QVILDAISNIFQ 379
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 308 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 367
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 368 QVILDAISNIFQ 379
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 304 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 363
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 364 QVILDAISNIFQ 375
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 304 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 363
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 364 QVILDAISNIFQ 375
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 309 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 368
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 369 QVILDAISNIFQ 380
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 309 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 368
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 369 QVILDAISNIFQ 380
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 315 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 374
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 375 QVILDAISNIFQ 386
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 309 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 368
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 369 QVILDAISNIFQ 380
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 335 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 394
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 395 QVILDAISNIFQ 406
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 343 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 402
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 403 QVILDAISNIFQ 414
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 418
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 419 QVILDAISNIFQ 430
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 418
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 419 QVILDAISNIFQ 430
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 418
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 419 QVILDAISNIFQ 430
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 345 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 404
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 405 QVILDAISNIFQ 416
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG-FDFLLNAMRDENNHVK 427
++PF+ + + K+D++ ++ A +A + G T++++ LVH G + L+N + ++ +
Sbjct: 310 LVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKII 369
Query: 428 DTTAWTLSRIFE 439
+S IF+
Sbjct: 370 LVILDAISNIFQ 381
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 30/150 (20%)
Query: 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLK 64
+ +FL A+S A+ +E NLRQL+ Q+ GF L+L + + P +R + K
Sbjct: 7 VAKFL--AESVIASTAKTSERNLRQLETQD--GFGLTLLHVIASTNLPLSTRLAGALFFK 62
Query: 65 NSLDAK----------DATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQ 114
N + K A E + K+ + + IS L L + EA
Sbjct: 63 NFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS--------LPNNLQVQIGEA------ 108
Query: 115 VIAKIASIEIPQKQWPELIRSLLNNMTQQD 144
I+ IA + P + WP L+ L + ++ D
Sbjct: 109 -ISSIADSDFPDR-WPTLLSDLASRLSNDD 136
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 30/150 (20%)
Query: 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLK 64
+ +FL A+S A+ +E NLRQL+ Q+ GF L+L + + P +R + K
Sbjct: 7 VAKFL--AESVIASTAKTSERNLRQLETQD--GFGLTLLHVIASTNLPLSTRLAGALFFK 62
Query: 65 NSLDAK----------DATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQ 114
N + K A E + K+ + + IS L L + EA
Sbjct: 63 NFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS--------LPNNLQVQIGEA------ 108
Query: 115 VIAKIASIEIPQKQWPELIRSLLNNMTQQD 144
I+ IA + P + WP L+ L + ++ D
Sbjct: 109 -ISSIADSDFPDR-WPTLLSDLASRLSNDD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,703,557
Number of Sequences: 62578
Number of extensions: 792084
Number of successful extensions: 2075
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1926
Number of HSP's gapped (non-prelim): 62
length of query: 872
length of database: 14,973,337
effective HSP length: 107
effective length of query: 765
effective length of database: 8,277,491
effective search space: 6332280615
effective search space used: 6332280615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)