Query 002877
Match_columns 872
No_of_seqs 266 out of 2671
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 12:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1241 Karyopherin (importin) 100.0 3E-106 8E-111 818.7 82.9 849 3-870 1-857 (859)
2 COG5215 KAP95 Karyopherin (imp 100.0 4.8E-86 1E-90 648.1 79.6 844 3-871 4-857 (858)
3 KOG2171 Karyopherin (importin) 100.0 2.6E-72 5.7E-77 602.9 72.1 795 3-868 4-914 (1075)
4 KOG2023 Nuclear transport rece 100.0 2E-73 4.3E-78 569.3 49.1 744 3-831 13-864 (885)
5 KOG1991 Nuclear transport rece 100.0 2.4E-35 5.2E-40 311.8 68.9 698 2-746 3-780 (1010)
6 KOG2171 Karyopherin (importin) 100.0 2.7E-35 5.9E-40 318.1 60.4 660 95-827 7-716 (1075)
7 KOG2023 Nuclear transport rece 100.0 2.7E-31 5.8E-36 267.6 49.0 679 36-831 9-824 (885)
8 KOG1824 TATA-binding protein-i 100.0 1.8E-28 3.9E-33 256.6 62.3 769 1-867 1-885 (1233)
9 KOG1992 Nuclear export recepto 100.0 4.6E-29 9.9E-34 258.1 53.8 676 4-744 6-815 (960)
10 KOG1241 Karyopherin (importin) 100.0 2.2E-28 4.8E-33 251.3 54.2 658 51-846 13-730 (859)
11 KOG2274 Predicted importin 9 [ 100.0 6.9E-27 1.5E-31 244.8 64.0 675 3-746 4-761 (1005)
12 KOG1824 TATA-binding protein-i 100.0 1.5E-24 3.2E-29 227.5 67.3 787 7-867 51-1035(1233)
13 KOG2021 Nuclear mRNA export fa 100.0 1.1E-24 2.4E-29 223.2 58.0 738 1-829 1-873 (980)
14 COG5656 SXM1 Importin, protein 100.0 2.2E-23 4.7E-28 213.6 65.5 698 1-745 1-780 (970)
15 KOG1993 Nuclear transport rece 100.0 1.5E-25 3.3E-30 231.0 45.4 652 5-702 2-750 (978)
16 COG5215 KAP95 Karyopherin (imp 100.0 4.6E-22 9.9E-27 197.9 54.6 715 50-869 16-807 (858)
17 KOG0213 Splicing factor 3b, su 99.9 5.4E-21 1.2E-25 195.7 53.4 723 4-871 364-1110(1172)
18 KOG2022 Nuclear transport rece 99.9 8.2E-18 1.8E-22 177.1 65.5 613 4-660 8-756 (982)
19 COG5101 CRM1 Importin beta-rel 99.9 2.7E-17 5.8E-22 166.1 59.7 522 5-561 16-674 (1053)
20 KOG0213 Splicing factor 3b, su 99.9 1.1E-17 2.3E-22 171.9 52.8 640 103-858 487-1132(1172)
21 COG5181 HSH155 U2 snRNP splice 99.9 7.7E-19 1.7E-23 176.6 41.2 730 4-872 169-916 (975)
22 PLN03200 cellulose synthase-in 99.9 2.6E-17 5.7E-22 194.5 56.4 773 3-868 13-860 (2102)
23 PLN03200 cellulose synthase-in 99.9 3.6E-17 7.8E-22 193.4 53.2 725 39-868 15-764 (2102)
24 KOG0915 Uncharacterized conser 99.9 4.6E-17 9.9E-22 180.7 45.8 626 85-839 811-1525(1702)
25 KOG0915 Uncharacterized conser 99.8 3E-17 6.6E-22 182.1 41.3 561 221-870 818-1429(1702)
26 COG5181 HSH155 U2 snRNP splice 99.8 2.5E-16 5.4E-21 158.8 40.4 613 103-824 292-947 (975)
27 COG5657 CSE1 CAS/CSE protein i 99.8 5.4E-15 1.2E-19 157.1 46.6 578 5-640 6-649 (947)
28 KOG1242 Protein containing ada 99.8 1.5E-15 3.2E-20 156.1 40.6 516 103-747 28-547 (569)
29 KOG1242 Protein containing ada 99.8 1.9E-15 4.1E-20 155.4 35.4 527 231-861 27-557 (569)
30 KOG0212 Uncharacterized conser 99.8 8.9E-16 1.9E-20 153.8 31.7 386 344-779 14-408 (675)
31 KOG2081 Nuclear transport regu 99.8 1.2E-14 2.7E-19 147.1 37.2 475 21-551 2-551 (559)
32 KOG0212 Uncharacterized conser 99.7 1.1E-12 2.4E-17 131.9 38.0 405 182-652 6-421 (675)
33 PF01602 Adaptin_N: Adaptin N 99.7 2.1E-12 4.5E-17 145.2 43.8 477 222-867 43-523 (526)
34 KOG1991 Nuclear transport rece 99.7 2.8E-09 6.1E-14 115.6 63.3 615 100-848 12-775 (1010)
35 KOG0166 Karyopherin (importin) 99.6 4.2E-14 9.2E-19 144.9 25.0 397 373-822 71-484 (514)
36 PF01602 Adaptin_N: Adaptin N 99.6 2.3E-12 4.9E-17 144.8 41.8 509 4-636 8-522 (526)
37 PTZ00429 beta-adaptin; Provisi 99.6 1E-10 2.2E-15 129.8 50.5 469 102-731 42-515 (746)
38 KOG1248 Uncharacterized conser 99.6 1.4E-08 3.1E-13 112.6 64.7 757 34-869 90-899 (1176)
39 PTZ00429 beta-adaptin; Provisi 99.6 4.3E-10 9.4E-15 125.0 52.2 400 5-488 34-435 (746)
40 KOG0166 Karyopherin (importin) 99.6 1.8E-12 3.8E-17 133.2 26.7 358 264-682 68-438 (514)
41 KOG0211 Protein phosphatase 2A 99.5 2.2E-10 4.8E-15 125.5 40.2 574 97-826 87-666 (759)
42 KOG0211 Protein phosphatase 2A 99.5 1E-09 2.2E-14 120.5 40.5 538 96-725 125-666 (759)
43 KOG1943 Beta-tubulin folding c 99.4 7.3E-08 1.6E-12 105.8 48.5 615 104-866 187-879 (1133)
44 KOG1060 Vesicle coat complex A 99.4 4.3E-09 9.3E-14 110.8 37.4 496 97-728 40-538 (968)
45 KOG1943 Beta-tubulin folding c 99.4 4.6E-07 1E-11 99.7 52.3 452 366-870 339-832 (1133)
46 KOG2020 Nuclear transport rece 99.4 4.1E-07 8.9E-12 103.3 52.3 503 4-537 11-629 (1041)
47 COG5064 SRP1 Karyopherin (impo 99.3 1.2E-11 2.6E-16 116.6 13.2 315 370-723 116-443 (526)
48 KOG1992 Nuclear export recepto 99.3 2.6E-06 5.6E-11 91.1 52.6 686 93-855 7-780 (960)
49 COG5064 SRP1 Karyopherin (impo 99.3 4E-11 8.8E-16 113.1 14.8 399 371-821 74-493 (526)
50 KOG1060 Vesicle coat complex A 99.3 2.7E-08 5.8E-13 105.0 36.4 444 191-745 48-514 (968)
51 KOG2274 Predicted importin 9 [ 99.3 5.2E-06 1.1E-10 89.8 51.6 675 98-863 10-775 (1005)
52 KOG1248 Uncharacterized conser 99.2 1.7E-05 3.7E-10 88.9 64.1 236 576-836 668-910 (1176)
53 PRK13800 putative oxidoreducta 99.2 2.5E-09 5.5E-14 125.3 26.2 271 95-482 624-895 (897)
54 KOG4224 Armadillo repeat prote 99.2 4.9E-10 1.1E-14 107.0 15.4 428 379-868 58-493 (550)
55 PF10508 Proteasom_PSMB: Prote 99.2 3.4E-08 7.4E-13 107.6 32.0 397 97-537 43-463 (503)
56 PF10508 Proteasom_PSMB: Prote 99.2 3.3E-08 7.2E-13 107.7 30.6 335 348-724 56-421 (503)
57 PRK09687 putative lyase; Provi 99.2 3E-09 6.6E-14 105.4 20.6 253 370-720 25-279 (280)
58 PRK09687 putative lyase; Provi 99.2 5.3E-09 1.2E-13 103.7 22.3 252 180-533 27-279 (280)
59 PF08506 Cse1: Cse1; InterPro 99.1 9E-09 2E-13 105.6 23.0 222 235-481 110-370 (370)
60 KOG1062 Vesicle coat complex A 99.1 6.4E-06 1.4E-10 88.1 44.0 465 136-728 75-549 (866)
61 KOG1240 Protein kinase contain 99.1 2.8E-08 6.2E-13 109.7 25.5 286 147-489 437-728 (1431)
62 PRK13800 putative oxidoreducta 99.1 1.7E-08 3.6E-13 118.5 25.9 275 37-435 621-895 (897)
63 KOG1059 Vesicle coat complex A 99.1 1E-06 2.2E-11 92.6 34.4 205 51-292 156-366 (877)
64 KOG1062 Vesicle coat complex A 99.1 5.5E-07 1.2E-11 95.9 32.9 401 375-871 77-498 (866)
65 KOG1020 Sister chromatid cohes 99.1 9.4E-05 2E-09 84.9 56.3 440 364-852 812-1277(1692)
66 KOG1967 DNA repair/transcripti 99.1 1E-05 2.2E-10 87.9 42.3 158 646-822 863-1022(1030)
67 PF12755 Vac14_Fab1_bd: Vacuol 99.0 1.9E-09 4.2E-14 86.2 8.8 93 384-485 2-95 (97)
68 PF03810 IBN_N: Importin-beta 99.0 1.5E-09 3.2E-14 85.1 7.5 76 23-102 1-76 (77)
69 KOG4535 HEAT and armadillo rep 99.0 7E-06 1.5E-10 82.2 34.2 583 146-778 9-654 (728)
70 PF12460 MMS19_C: RNAPII trans 99.0 4.8E-06 1E-10 89.1 36.3 367 236-657 17-413 (415)
71 KOG1059 Vesicle coat complex A 99.0 5.3E-05 1.2E-09 80.1 41.1 248 222-539 145-401 (877)
72 KOG1061 Vesicle coat complex A 98.9 3.6E-06 7.9E-11 90.1 31.0 257 5-291 51-308 (734)
73 COG5240 SEC21 Vesicle coat com 98.9 0.00018 3.9E-09 74.1 44.1 96 382-488 238-334 (898)
74 KOG1967 DNA repair/transcripti 98.9 0.00036 7.7E-09 76.4 45.7 134 580-720 885-1021(1030)
75 COG5240 SEC21 Vesicle coat com 98.8 0.00025 5.5E-09 73.0 39.4 482 85-679 58-554 (898)
76 KOG1058 Vesicle coat complex C 98.8 2.7E-05 6E-10 82.5 33.3 425 352-871 39-466 (948)
77 PF12348 CLASP_N: CLASP N term 98.8 2E-07 4.3E-12 91.4 16.4 200 371-649 10-217 (228)
78 PF12460 MMS19_C: RNAPII trans 98.8 1.8E-05 3.8E-10 84.7 32.3 335 365-742 39-413 (415)
79 KOG4224 Armadillo repeat prote 98.8 7.8E-07 1.7E-11 85.6 19.2 381 106-593 61-448 (550)
80 COG5656 SXM1 Importin, protein 98.8 0.00056 1.2E-08 73.0 57.3 338 408-799 406-776 (970)
81 KOG4535 HEAT and armadillo rep 98.7 1.8E-05 3.8E-10 79.4 27.6 257 382-660 363-623 (728)
82 KOG1020 Sister chromatid cohes 98.7 0.002 4.4E-08 74.6 53.3 404 93-539 817-1257(1692)
83 PF12348 CLASP_N: CLASP N term 98.6 1.5E-06 3.3E-11 85.2 16.8 198 410-685 7-211 (228)
84 KOG1061 Vesicle coat complex A 98.6 3.8E-05 8.2E-10 82.5 27.3 406 222-727 50-457 (734)
85 KOG1240 Protein kinase contain 98.5 1.5E-05 3.2E-10 89.1 22.0 281 107-443 438-729 (1431)
86 KOG1058 Vesicle coat complex C 98.5 0.00054 1.2E-08 73.2 32.2 416 182-683 26-466 (948)
87 KOG1077 Vesicle coat complex A 98.5 0.003 6.6E-08 67.1 40.6 433 375-864 81-583 (938)
88 KOG0168 Putative ubiquitin fus 98.5 0.00048 1E-08 74.6 31.0 382 453-869 206-630 (1051)
89 KOG0392 SNF2 family DNA-depend 98.4 0.007 1.5E-07 68.9 44.6 179 626-829 750-930 (1549)
90 PF08389 Xpo1: Exportin 1-like 98.4 1.1E-06 2.4E-11 79.6 8.9 130 106-245 2-148 (148)
91 KOG2259 Uncharacterized conser 98.4 5.4E-05 1.2E-09 79.2 21.8 308 373-737 203-525 (823)
92 KOG2259 Uncharacterized conser 98.4 0.0023 5E-08 67.6 33.1 263 220-539 197-514 (823)
93 PF12755 Vac14_Fab1_bd: Vacuol 98.4 1.7E-06 3.6E-11 69.5 8.4 87 625-714 2-88 (97)
94 KOG0414 Chromosome condensatio 98.4 0.0099 2.1E-07 67.6 54.4 105 96-207 316-428 (1251)
95 PF13513 HEAT_EZ: HEAT-like re 98.3 6.4E-07 1.4E-11 64.3 4.6 55 382-437 1-55 (55)
96 COG5096 Vesicle coat complex, 98.3 0.0073 1.6E-07 67.0 36.7 137 5-163 57-196 (757)
97 PF03378 CAS_CSE1: CAS/CSE pro 98.3 0.0005 1.1E-08 72.8 26.6 261 451-741 19-291 (435)
98 KOG2032 Uncharacterized conser 98.3 0.0013 2.9E-08 67.1 27.8 272 583-868 235-531 (533)
99 cd00020 ARM Armadillo/beta-cat 98.3 2.5E-06 5.4E-11 74.1 7.8 109 369-485 8-119 (120)
100 KOG1993 Nuclear transport rece 98.3 0.011 2.4E-07 64.1 54.7 363 472-870 412-811 (978)
101 KOG1078 Vesicle coat complex C 98.3 0.011 2.5E-07 64.0 36.2 472 83-679 55-531 (865)
102 KOG2021 Nuclear mRNA export fa 98.3 0.011 2.4E-07 63.6 48.1 303 342-679 452-819 (980)
103 PF14500 MMS19_N: Dos2-interac 98.3 0.00015 3.3E-09 71.0 20.2 247 135-417 3-257 (262)
104 KOG2032 Uncharacterized conser 98.2 0.00054 1.2E-08 69.8 23.9 161 366-543 215-377 (533)
105 KOG0891 DNA-dependent protein 98.2 0.045 9.8E-07 69.0 45.4 433 344-830 579-1047(2341)
106 PF05804 KAP: Kinesin-associat 98.2 0.00016 3.4E-09 80.4 21.7 367 387-823 268-648 (708)
107 KOG1078 Vesicle coat complex C 98.2 0.016 3.4E-07 62.9 36.9 138 693-867 392-531 (865)
108 KOG1410 Nuclear transport rece 98.2 0.014 3E-07 61.9 50.4 144 4-164 6-159 (1082)
109 PF05804 KAP: Kinesin-associat 98.2 0.00033 7.1E-09 77.8 22.8 380 421-869 261-650 (708)
110 COG5096 Vesicle coat complex, 98.2 0.023 5E-07 63.1 39.9 165 190-398 31-196 (757)
111 PF14500 MMS19_N: Dos2-interac 98.2 0.00037 8E-09 68.3 20.7 247 373-657 4-257 (262)
112 KOG0168 Putative ubiquitin fus 98.1 0.017 3.7E-07 63.2 32.6 384 408-843 209-648 (1051)
113 KOG2956 CLIP-associating prote 98.0 0.00064 1.4E-08 68.8 19.0 168 452-653 323-493 (516)
114 KOG4653 Uncharacterized conser 98.0 0.0011 2.4E-08 72.2 21.9 233 410-682 727-966 (982)
115 KOG4413 26S proteasome regulat 98.0 0.0069 1.5E-07 58.4 24.6 250 350-640 63-335 (524)
116 PF03378 CAS_CSE1: CAS/CSE pro 98.0 0.00037 8.1E-09 73.7 18.1 237 600-860 17-264 (435)
117 KOG2956 CLIP-associating prote 98.0 0.00065 1.4E-08 68.8 18.5 207 369-617 288-498 (516)
118 PLN03076 ARF guanine nucleotid 97.9 0.027 5.8E-07 69.6 34.8 326 478-829 1110-1494(1780)
119 PF01603 B56: Protein phosphat 97.9 0.0038 8.2E-08 66.2 23.2 263 379-680 101-370 (409)
120 KOG4653 Uncharacterized conser 97.9 0.0022 4.8E-08 69.9 20.9 199 460-690 729-928 (982)
121 PF13513 HEAT_EZ: HEAT-like re 97.8 1.5E-05 3.2E-10 57.2 3.3 54 424-484 1-55 (55)
122 PF05918 API5: Apoptosis inhib 97.8 0.0059 1.3E-07 65.5 23.6 192 51-270 34-227 (556)
123 KOG1525 Sister chromatid cohes 97.8 0.15 3.3E-06 60.7 43.7 170 228-427 266-441 (1266)
124 PLN03076 ARF guanine nucleotid 97.8 0.22 4.8E-06 62.0 43.3 301 345-660 1152-1512(1780)
125 PF13646 HEAT_2: HEAT repeats; 97.8 0.00023 4.9E-09 57.4 9.9 84 371-482 2-88 (88)
126 KOG1077 Vesicle coat complex A 97.8 0.087 1.9E-06 56.7 38.8 323 133-511 113-452 (938)
127 PF12717 Cnd1: non-SMC mitotic 97.8 0.0018 4E-08 60.0 16.9 110 381-510 1-111 (178)
128 cd00020 ARM Armadillo/beta-cat 97.8 5.7E-05 1.2E-09 65.5 6.5 110 410-535 7-119 (120)
129 PF04826 Arm_2: Armadillo-like 97.8 0.0021 4.6E-08 62.5 17.6 220 373-629 17-253 (254)
130 PF12717 Cnd1: non-SMC mitotic 97.7 0.002 4.4E-08 59.7 16.7 133 146-291 1-139 (178)
131 KOG2022 Nuclear transport rece 97.7 0.12 2.6E-06 57.3 55.8 238 577-829 482-738 (982)
132 KOG1820 Microtubule-associated 97.7 0.0021 4.6E-08 72.4 19.1 210 363-653 248-459 (815)
133 PF04826 Arm_2: Armadillo-like 97.7 0.0013 2.9E-08 63.9 14.4 192 410-683 12-208 (254)
134 PF05918 API5: Apoptosis inhib 97.6 0.1 2.2E-06 56.4 28.6 282 224-560 26-317 (556)
135 PF13646 HEAT_2: HEAT repeats; 97.6 0.00043 9.4E-09 55.7 8.7 86 412-532 1-88 (88)
136 PF02985 HEAT: HEAT repeat; I 97.5 0.00017 3.7E-09 44.0 4.1 30 411-440 1-30 (31)
137 KOG1822 Uncharacterized conser 97.5 0.45 9.7E-06 57.7 38.9 223 410-661 876-1109(2067)
138 PF08506 Cse1: Cse1; InterPro 97.5 0.084 1.8E-06 54.9 26.1 277 541-863 70-370 (370)
139 PF08167 RIX1: rRNA processing 97.5 0.0058 1.3E-07 55.5 15.5 134 605-742 21-162 (165)
140 PF05004 IFRD: Interferon-rela 97.5 0.11 2.4E-06 52.8 26.0 192 229-443 51-261 (309)
141 KOG2025 Chromosome condensatio 97.5 0.25 5.3E-06 53.5 37.6 236 4-283 9-251 (892)
142 PF10274 ParcG: Parkin co-regu 97.4 0.0025 5.3E-08 57.3 12.0 120 608-728 37-169 (183)
143 PF05004 IFRD: Interferon-rela 97.4 0.033 7.1E-07 56.5 21.3 213 412-641 45-260 (309)
144 KOG4413 26S proteasome regulat 97.4 0.17 3.6E-06 49.2 26.4 296 112-442 63-380 (524)
145 KOG1820 Microtubule-associated 97.4 0.0092 2E-07 67.4 18.0 196 454-684 249-447 (815)
146 KOG1293 Proteins containing ar 97.3 0.25 5.5E-06 53.0 26.0 137 345-488 392-535 (678)
147 KOG0414 Chromosome condensatio 97.3 0.62 1.3E-05 53.8 57.5 179 647-866 916-1101(1251)
148 PF10274 ParcG: Parkin co-regu 97.2 0.0009 1.9E-08 60.1 6.8 91 649-742 37-131 (183)
149 KOG0413 Uncharacterized conser 97.2 0.6 1.3E-05 52.4 41.6 144 667-846 947-1091(1529)
150 KOG2062 26S proteasome regulat 97.2 0.52 1.1E-05 51.4 36.6 120 610-745 555-675 (929)
151 PF13001 Ecm29: Proteasome sta 97.2 0.55 1.2E-05 51.7 29.1 373 6-443 26-447 (501)
152 PF12719 Cnd3: Nuclear condens 97.1 0.077 1.7E-06 54.1 21.0 128 584-724 5-144 (298)
153 cd00256 VATPase_H VATPase_H, r 97.1 0.31 6.8E-06 51.2 25.2 356 34-438 50-424 (429)
154 PF04510 DUF577: Family of unk 97.0 0.059 1.3E-06 47.5 15.5 154 92-252 3-166 (174)
155 PF12719 Cnd3: Nuclear condens 97.0 0.14 3E-06 52.2 21.0 153 130-292 25-186 (298)
156 COG1413 FOG: HEAT repeat [Ener 97.0 0.25 5.5E-06 51.7 23.7 250 130-487 42-305 (335)
157 COG5098 Chromosome condensatio 96.9 0.83 1.8E-05 49.4 42.7 164 36-206 239-414 (1128)
158 PF10521 DUF2454: Protein of u 96.9 0.058 1.3E-06 54.2 17.2 175 381-559 88-275 (282)
159 PF08167 RIX1: rRNA processing 96.9 0.023 4.9E-07 51.7 12.9 140 405-556 20-162 (165)
160 cd00256 VATPase_H VATPase_H, r 96.9 0.82 1.8E-05 48.2 26.3 274 578-867 117-424 (429)
161 KOG1243 Protein kinase [Genera 96.8 0.055 1.2E-06 58.5 16.6 252 146-443 267-519 (690)
162 COG1413 FOG: HEAT repeat [Ener 96.8 0.87 1.9E-05 47.7 28.0 279 37-436 43-332 (335)
163 PF02985 HEAT: HEAT repeat; I 96.8 0.0028 6.1E-08 38.6 4.1 30 840-870 2-31 (31)
164 TIGR02270 conserved hypothetic 96.8 0.9 1.9E-05 48.1 25.1 241 93-439 55-296 (410)
165 TIGR02270 conserved hypothetic 96.8 0.38 8.3E-06 50.8 22.4 241 131-485 54-295 (410)
166 KOG1293 Proteins containing ar 96.7 1.2 2.6E-05 48.2 38.3 431 52-539 22-493 (678)
167 COG5098 Chromosome condensatio 96.6 1.4 3E-05 47.8 26.6 130 349-487 281-416 (1128)
168 PF11864 DUF3384: Domain of un 96.6 1.5 3.3E-05 47.9 33.8 290 108-438 6-329 (464)
169 KOG0946 ER-Golgi vesicle-tethe 96.6 1.6 3.5E-05 48.2 35.8 352 345-720 38-434 (970)
170 KOG2160 Armadillo/beta-catenin 96.6 0.14 3.1E-06 51.1 16.4 145 379-539 94-243 (342)
171 KOG2549 Transcription initiati 96.6 0.05 1.1E-06 57.0 13.8 169 222-417 208-390 (576)
172 KOG1949 Uncharacterized conser 96.5 0.52 1.1E-05 51.0 20.9 205 79-291 112-331 (1005)
173 PF11865 DUF3385: Domain of un 96.5 0.034 7.4E-07 50.1 10.7 119 604-724 3-158 (160)
174 PF04118 Dopey_N: Dopey, N-ter 96.4 1.2 2.6E-05 44.8 21.9 142 583-728 29-172 (307)
175 KOG1517 Guanine nucleotide bin 96.4 0.12 2.6E-06 58.3 15.9 227 238-488 487-734 (1387)
176 PF08064 UME: UME (NUC010) dom 96.3 0.065 1.4E-06 44.4 10.6 95 605-702 7-106 (107)
177 KOG0891 DNA-dependent protein 96.3 5.9 0.00013 51.2 51.7 193 609-820 565-759 (2341)
178 KOG2549 Transcription initiati 96.3 0.08 1.7E-06 55.5 13.3 133 608-745 206-349 (576)
179 PF11864 DUF3384: Domain of un 96.3 2.4 5.1E-05 46.4 35.2 411 345-822 5-464 (464)
180 KOG2933 Uncharacterized conser 96.3 0.12 2.5E-06 50.2 13.4 125 410-553 88-213 (334)
181 KOG2062 26S proteasome regulat 96.3 0.44 9.5E-06 51.9 18.8 109 575-704 568-677 (929)
182 KOG2933 Uncharacterized conser 96.2 0.22 4.9E-06 48.4 15.1 181 222-433 89-271 (334)
183 PF01603 B56: Protein phosphat 96.2 0.91 2E-05 48.5 21.4 231 5-260 135-380 (409)
184 PF08623 TIP120: TATA-binding 96.2 0.05 1.1E-06 48.6 9.9 131 644-780 3-150 (169)
185 COG5095 TAF6 Transcription ini 96.2 0.37 8E-06 46.3 15.9 95 630-724 257-360 (450)
186 PF13251 DUF4042: Domain of un 96.2 0.093 2E-06 47.9 11.7 138 345-487 1-175 (182)
187 KOG0889 Histone acetyltransfer 96.1 7.8 0.00017 51.0 45.7 125 138-268 12-144 (3550)
188 PF08767 CRM1_C: CRM1 C termin 96.1 0.56 1.2E-05 48.1 18.5 166 522-704 42-226 (319)
189 PF11865 DUF3385: Domain of un 96.0 0.09 2E-06 47.4 11.1 149 502-681 8-158 (160)
190 KOG2081 Nuclear transport regu 96.0 2.7 5.8E-05 44.9 32.3 241 609-870 199-459 (559)
191 smart00802 UME Domain in UVSB 96.0 0.14 3E-06 42.1 10.8 94 605-701 7-105 (107)
192 COG5095 TAF6 Transcription ini 95.9 0.1 2.2E-06 49.9 11.1 85 314-398 270-360 (450)
193 PF13251 DUF4042: Domain of un 95.9 0.064 1.4E-06 49.0 9.6 142 107-252 1-176 (182)
194 KOG2025 Chromosome condensatio 95.9 3.5 7.6E-05 45.2 31.8 107 407-532 82-189 (892)
195 cd08050 TAF6 TATA Binding Prot 95.9 0.18 3.9E-06 52.1 14.1 153 222-397 179-340 (343)
196 PF12054 DUF3535: Domain of un 95.7 3 6.6E-05 44.9 22.8 79 344-422 101-180 (441)
197 PF08767 CRM1_C: CRM1 C termin 95.7 3.1 6.7E-05 42.7 22.1 126 526-664 91-228 (319)
198 KOG2160 Armadillo/beta-catenin 95.7 2.8 6E-05 42.2 21.5 181 470-678 96-280 (342)
199 KOG2759 Vacuolar H+-ATPase V1 95.7 3.1 6.7E-05 42.7 24.4 72 650-723 366-438 (442)
200 PF08569 Mo25: Mo25-like; Int 95.6 3.4 7.3E-05 42.4 25.7 186 96-292 80-284 (335)
201 PF08064 UME: UME (NUC010) dom 95.5 0.15 3.3E-06 42.2 9.7 93 646-742 7-103 (107)
202 smart00802 UME Domain in UVSB 95.4 0.17 3.8E-06 41.5 9.4 94 645-742 6-103 (107)
203 PF13001 Ecm29: Proteasome sta 95.4 5.5 0.00012 44.0 32.0 130 352-489 302-446 (501)
204 KOG1517 Guanine nucleotide bin 95.3 1.5 3.3E-05 50.1 18.9 197 33-252 468-673 (1387)
205 KOG0567 HEAT repeat-containing 95.2 3 6.5E-05 39.9 18.7 98 609-728 187-285 (289)
206 cd08050 TAF6 TATA Binding Prot 95.2 0.26 5.6E-06 51.0 12.3 124 353-484 198-338 (343)
207 smart00638 LPD_N Lipoprotein N 95.2 1.5 3.3E-05 49.8 19.8 137 363-531 392-540 (574)
208 KOG1837 Uncharacterized conser 95.2 10 0.00023 45.9 27.4 99 708-829 1518-1616(1621)
209 KOG1243 Protein kinase [Genera 95.0 0.4 8.6E-06 52.3 13.2 188 259-488 327-517 (690)
210 PF04118 Dopey_N: Dopey, N-ter 94.9 4.1 8.9E-05 41.1 19.2 169 479-677 30-198 (307)
211 KOG2137 Protein kinase [Signal 94.9 4.8 0.0001 44.5 20.8 213 453-704 307-520 (700)
212 KOG0392 SNF2 family DNA-depend 94.9 11 0.00024 44.6 45.5 167 91-267 76-254 (1549)
213 COG5218 YCG1 Chromosome conden 94.9 1.3 2.8E-05 47.0 15.9 106 88-202 87-194 (885)
214 PF03224 V-ATPase_H_N: V-ATPas 94.9 1.3 2.7E-05 45.7 16.4 162 577-746 72-250 (312)
215 KOG1949 Uncharacterized conser 94.8 0.18 3.9E-06 54.4 9.7 151 92-250 174-331 (1005)
216 KOG4524 Uncharacterized conser 94.7 10 0.00022 43.5 49.0 283 431-746 569-900 (1014)
217 KOG1048 Neural adherens juncti 94.7 2.5 5.3E-05 47.1 18.2 149 691-862 517-678 (717)
218 PF03224 V-ATPase_H_N: V-ATPas 94.6 5.3 0.00011 41.1 20.1 232 620-865 68-311 (312)
219 PF10521 DUF2454: Protein of u 94.4 1.6 3.4E-05 44.1 15.3 145 602-746 112-276 (282)
220 PF12054 DUF3535: Domain of un 94.3 9.5 0.00021 41.2 27.0 91 646-736 308-437 (441)
221 COG5116 RPN2 26S proteasome re 94.2 0.55 1.2E-05 49.5 11.4 150 371-558 519-671 (926)
222 KOG0413 Uncharacterized conser 94.0 14 0.00031 42.3 41.8 132 578-729 947-1079(1529)
223 COG5101 CRM1 Importin beta-rel 94.0 11 0.00024 40.9 41.7 136 694-846 483-623 (1053)
224 KOG2137 Protein kinase [Signal 93.9 5.1 0.00011 44.3 18.4 249 3-286 239-491 (700)
225 PF10363 DUF2435: Protein of u 93.9 0.7 1.5E-05 36.9 9.2 73 132-211 4-76 (92)
226 COG5116 RPN2 26S proteasome re 93.8 0.6 1.3E-05 49.2 10.9 118 369-514 553-672 (926)
227 PF01347 Vitellogenin_N: Lipop 93.8 7.6 0.00017 44.7 21.6 93 366-483 488-586 (618)
228 KOG0889 Histone acetyltransfer 93.6 35 0.00076 45.6 47.6 315 322-661 985-1329(3550)
229 PF08623 TIP120: TATA-binding 93.5 1.4 2.9E-05 39.7 11.2 128 454-595 5-151 (169)
230 KOG2149 Uncharacterized conser 93.2 1.7 3.7E-05 44.4 12.7 133 412-560 60-193 (393)
231 PF00514 Arm: Armadillo/beta-c 93.2 0.2 4.3E-06 32.9 4.3 29 410-438 12-40 (41)
232 KOG1851 Uncharacterized conser 93.1 27 0.00058 42.7 33.1 172 348-539 1505-1681(1710)
233 PF08569 Mo25: Mo25-like; Int 93.1 12 0.00026 38.5 21.1 189 51-251 88-284 (335)
234 PF10363 DUF2435: Protein of u 93.0 1.2 2.7E-05 35.5 9.2 70 372-443 7-76 (92)
235 PF00514 Arm: Armadillo/beta-c 93.0 0.2 4.4E-06 32.9 4.1 32 836-868 10-41 (41)
236 KOG1222 Kinesin associated pro 93.0 13 0.00029 38.8 27.8 114 386-514 281-396 (791)
237 KOG1837 Uncharacterized conser 92.9 29 0.00063 42.4 31.3 80 609-689 1541-1620(1621)
238 KOG2085 Serine/threonine prote 92.8 7.2 0.00016 40.0 16.1 259 380-678 144-412 (457)
239 KOG4199 Uncharacterized conser 92.8 11 0.00025 37.5 25.1 112 608-723 331-444 (461)
240 KOG0803 Predicted E3 ubiquitin 92.7 5.5 0.00012 48.3 17.8 240 608-862 40-297 (1312)
241 PF12231 Rif1_N: Rap1-interact 92.3 17 0.00037 38.4 31.7 302 171-535 34-351 (372)
242 KOG2149 Uncharacterized conser 92.3 3.1 6.8E-05 42.5 13.1 132 611-745 60-192 (393)
243 smart00638 LPD_N Lipoprotein N 92.2 15 0.00032 41.8 20.6 118 344-483 411-542 (574)
244 KOG0567 HEAT repeat-containing 92.1 12 0.00025 36.1 19.5 121 40-204 6-126 (289)
245 KOG4500 Rho/Rac GTPase guanine 92.1 16 0.00036 37.7 31.2 73 457-535 314-389 (604)
246 KOG2122 Beta-catenin-binding p 91.7 18 0.0004 43.6 19.6 105 504-636 235-341 (2195)
247 PF08161 NUC173: NUC173 domain 91.7 12 0.00026 35.2 18.4 191 614-822 5-197 (198)
248 KOG3961 Uncharacterized conser 91.6 0.4 8.7E-06 43.6 5.5 90 651-743 115-207 (262)
249 PF05536 Neurochondrin: Neuroc 91.4 27 0.00059 38.9 35.6 252 264-539 7-264 (543)
250 KOG0803 Predicted E3 ubiquitin 90.9 43 0.00092 41.2 22.4 217 190-423 53-289 (1312)
251 KOG1822 Uncharacterized conser 90.8 54 0.0012 41.2 57.0 193 38-251 52-249 (2067)
252 KOG1848 Uncharacterized conser 90.4 31 0.00067 41.6 19.8 240 190-441 854-1134(1610)
253 PF12530 DUF3730: Protein of u 90.0 20 0.00043 35.0 23.0 199 470-704 14-215 (234)
254 PF14664 RICTOR_N: Rapamycin-i 90.0 28 0.0006 36.6 18.2 222 11-252 33-271 (371)
255 COG5234 CIN1 Beta-tubulin fold 89.9 36 0.00077 37.8 21.8 283 193-507 174-505 (993)
256 cd03568 VHS_STAM VHS domain fa 89.8 13 0.00027 32.9 13.1 78 607-684 35-114 (144)
257 PF09324 DUF1981: Domain of un 89.8 3 6.4E-05 32.9 8.3 66 222-287 18-84 (86)
258 KOG4524 Uncharacterized conser 89.5 47 0.001 38.5 44.8 70 223-292 280-349 (1014)
259 KOG2759 Vacuolar H+-ATPase V1 89.5 29 0.00062 36.1 25.2 357 35-439 63-438 (442)
260 PF05536 Neurochondrin: Neuroc 89.1 43 0.00092 37.5 35.8 187 275-489 70-264 (543)
261 PF04510 DUF577: Family of unk 88.8 6.4 0.00014 35.2 10.3 101 455-563 43-144 (174)
262 KOG2122 Beta-catenin-binding p 88.8 67 0.0015 39.3 24.0 37 36-72 234-271 (2195)
263 PF00790 VHS: VHS domain; Int 88.7 13 0.00029 32.7 12.7 78 606-683 39-121 (140)
264 KOG3961 Uncharacterized conser 88.3 1.7 3.7E-05 39.8 6.6 89 610-699 115-206 (262)
265 cd03569 VHS_Hrs_Vps27p VHS dom 87.2 14 0.00031 32.5 11.8 77 608-684 40-118 (142)
266 PF07571 DUF1546: Protein of u 87.0 1.3 2.8E-05 35.5 4.7 54 343-396 19-77 (92)
267 PF12830 Nipped-B_C: Sister ch 86.6 28 0.0006 32.5 14.7 68 93-164 9-76 (187)
268 PF14664 RICTOR_N: Rapamycin-i 86.1 48 0.001 34.9 20.5 120 128-257 22-144 (371)
269 PF12783 Sec7_N: Guanine nucle 86.0 9.8 0.00021 34.8 10.7 100 623-723 36-146 (168)
270 PF14225 MOR2-PAG1_C: Cell mor 85.7 39 0.00085 33.4 20.4 195 454-684 60-258 (262)
271 PF11919 DUF3437: Domain of un 85.3 1.7 3.8E-05 34.3 4.5 58 383-442 4-61 (90)
272 KOG0946 ER-Golgi vesicle-tethe 85.1 74 0.0016 36.1 46.4 160 128-293 19-197 (970)
273 PF12231 Rif1_N: Rap1-interact 85.0 56 0.0012 34.6 33.1 275 344-679 60-351 (372)
274 COG5218 YCG1 Chromosome conden 84.7 65 0.0014 35.1 39.9 117 172-292 45-162 (885)
275 PF08389 Xpo1: Exportin 1-like 84.7 9.4 0.0002 33.9 10.0 69 644-718 76-148 (148)
276 KOG2213 Apoptosis inhibitor 5/ 84.4 53 0.0011 33.8 19.1 63 413-487 28-91 (460)
277 cd03561 VHS VHS domain family; 84.3 20 0.00044 31.2 11.3 77 608-684 36-116 (133)
278 PF12333 Ipi1_N: Rix1 complex 84.3 12 0.00026 30.7 9.2 61 602-662 4-65 (102)
279 smart00288 VHS Domain present 84.1 28 0.0006 30.3 13.0 76 608-683 36-114 (133)
280 KOG1851 Uncharacterized conser 84.0 1.2E+02 0.0026 37.6 35.5 156 650-828 1526-1682(1710)
281 PF11698 V-ATPase_H_C: V-ATPas 83.5 6.3 0.00014 33.0 7.3 73 129-207 41-115 (119)
282 PF04388 Hamartin: Hamartin pr 83.4 48 0.001 38.1 16.7 128 605-734 66-203 (668)
283 KOG1848 Uncharacterized conser 82.0 60 0.0013 39.4 16.5 114 707-827 1010-1135(1610)
284 smart00185 ARM Armadillo/beta- 81.7 2.2 4.7E-05 27.7 3.3 29 410-438 12-40 (41)
285 PF01347 Vitellogenin_N: Lipop 81.3 1.1E+02 0.0024 35.3 24.0 123 104-247 447-586 (618)
286 PF11698 V-ATPase_H_C: V-ATPas 80.5 18 0.00039 30.4 8.8 69 222-291 44-115 (119)
287 PF07571 DUF1546: Protein of u 80.4 8.9 0.00019 30.7 6.9 59 420-485 16-77 (92)
288 PF12074 DUF3554: Domain of un 80.3 79 0.0017 33.0 18.5 92 606-701 19-112 (339)
289 cd03568 VHS_STAM VHS domain fa 80.1 36 0.00078 30.1 11.2 77 175-253 36-113 (144)
290 PF08713 DNA_alkylation: DNA a 79.5 14 0.00031 35.4 9.7 87 344-442 100-187 (213)
291 PLN03205 ATR interacting prote 78.7 84 0.0018 32.3 15.1 124 408-537 321-447 (652)
292 PF14668 RICTOR_V: Rapamycin-i 78.7 4.6 0.0001 30.5 4.5 54 812-868 4-58 (73)
293 PF12530 DUF3730: Protein of u 78.6 68 0.0015 31.3 20.4 175 229-435 9-185 (234)
294 COG5234 CIN1 Beta-tubulin fold 78.2 1.2E+02 0.0026 33.9 20.7 152 367-537 245-417 (993)
295 KOG0929 Guanine nucleotide exc 77.8 1.6E+02 0.0034 36.8 18.7 257 378-660 1047-1321(1514)
296 cd03569 VHS_Hrs_Vps27p VHS dom 77.7 27 0.00058 30.8 9.7 76 409-489 40-117 (142)
297 KOG3036 Protein involved in ce 77.7 68 0.0015 30.8 12.7 116 133-251 126-248 (293)
298 PF08161 NUC173: NUC173 domain 77.0 42 0.00091 31.6 11.4 54 389-443 21-74 (198)
299 PF12830 Nipped-B_C: Sister ch 77.0 64 0.0014 30.1 15.7 69 131-209 8-76 (187)
300 cd03561 VHS VHS domain family; 76.8 41 0.00089 29.3 10.7 79 455-539 34-115 (133)
301 PF12333 Ipi1_N: Rix1 complex 76.7 7.5 0.00016 31.9 5.6 61 402-468 3-63 (102)
302 PF09324 DUF1981: Domain of un 76.3 11 0.00024 29.7 6.3 68 650-719 17-84 (86)
303 PF12783 Sec7_N: Guanine nucle 76.2 62 0.0014 29.5 14.0 101 192-292 36-147 (168)
304 PF04388 Hamartin: Hamartin pr 75.3 72 0.0016 36.8 14.8 153 96-271 8-161 (668)
305 smart00185 ARM Armadillo/beta- 75.2 4.6 9.9E-05 26.1 3.4 28 839-867 13-40 (41)
306 KOG4199 Uncharacterized conser 74.5 1E+02 0.0022 31.2 31.7 309 128-485 105-443 (461)
307 PF12765 Cohesin_HEAT: HEAT re 74.3 6.5 0.00014 25.9 3.8 41 156-202 2-42 (42)
308 KOG1877 Putative transmembrane 74.2 1.6E+02 0.0036 34.0 16.6 244 172-432 52-322 (819)
309 PF12765 Cohesin_HEAT: HEAT re 73.6 4.6 0.0001 26.6 3.0 25 409-433 17-41 (42)
310 KOG2199 Signal transducing ada 73.3 80 0.0017 32.5 12.5 95 606-703 42-138 (462)
311 cd03572 ENTH_epsin_related ENT 72.9 27 0.00058 29.7 8.0 77 454-536 34-119 (122)
312 PHA01351 putative minor struct 72.6 1.7E+02 0.0036 32.7 20.1 52 811-867 230-285 (1070)
313 KOG4500 Rho/Rac GTPase guanine 72.3 1.3E+02 0.0029 31.5 32.1 152 367-537 314-476 (604)
314 PF12074 DUF3554: Domain of un 72.3 1.3E+02 0.0028 31.4 22.6 109 384-514 3-113 (339)
315 PF12397 U3snoRNP10: U3 small 70.9 37 0.00081 28.9 8.9 73 407-488 3-76 (121)
316 KOG1525 Sister chromatid cohes 70.2 2.8E+02 0.0061 34.5 48.3 166 346-513 238-433 (1266)
317 KOG0929 Guanine nucleotide exc 69.1 3.1E+02 0.0067 34.5 20.1 156 104-267 1049-1221(1514)
318 smart00288 VHS Domain present 68.8 59 0.0013 28.3 9.7 76 409-489 36-114 (133)
319 cd03565 VHS_Tom1 VHS domain fa 68.5 33 0.00072 30.2 8.1 91 650-740 38-133 (141)
320 PF00790 VHS: VHS domain; Int 68.4 83 0.0018 27.6 13.5 77 174-252 40-120 (140)
321 COG5657 CSE1 CAS/CSE protein i 68.2 2.4E+02 0.0053 32.9 34.3 168 667-866 257-428 (947)
322 cd03567 VHS_GGA VHS domain fam 67.2 88 0.0019 27.4 13.2 76 608-683 37-119 (139)
323 PF14225 MOR2-PAG1_C: Cell mor 66.8 1.4E+02 0.003 29.6 18.6 169 646-850 60-239 (262)
324 KOG3687 Tuberin - Rap/ran-GTPa 66.4 2.7E+02 0.0058 32.8 27.8 52 650-701 649-700 (1697)
325 KOG2085 Serine/threonine prote 65.9 1.8E+02 0.0038 30.5 16.5 90 391-487 322-415 (457)
326 PF11701 UNC45-central: Myosin 65.3 17 0.00037 32.7 5.9 131 344-483 19-156 (157)
327 PF10350 DUF2428: Putative dea 65.0 1.5E+02 0.0033 29.4 16.4 184 425-622 62-253 (255)
328 KOG1048 Neural adherens juncti 64.9 2.6E+02 0.0056 32.0 25.1 122 455-591 515-641 (717)
329 PF08146 BP28CT: BP28CT (NUC21 64.5 1.1E+02 0.0023 27.5 14.9 84 573-661 32-119 (153)
330 cd00197 VHS_ENTH_ANTH VHS, ENT 64.4 76 0.0016 26.7 9.4 73 364-437 33-113 (115)
331 PF12397 U3snoRNP10: U3 small 64.3 54 0.0012 27.9 8.6 74 364-441 2-76 (121)
332 PF11701 UNC45-central: Myosin 64.2 48 0.001 29.9 8.6 144 697-862 8-153 (157)
333 PF14631 FancD2: Fanconi anaem 63.1 2.9E+02 0.0063 35.2 17.3 186 53-249 394-582 (1426)
334 COG5369 Uncharacterized conser 62.8 2.3E+02 0.0051 30.8 17.4 179 234-439 402-594 (743)
335 KOG2229 Protein required for a 62.6 2.3E+02 0.0049 30.6 24.5 113 130-250 15-129 (616)
336 PF14668 RICTOR_V: Rapamycin-i 61.9 25 0.00054 26.6 5.2 54 384-440 3-59 (73)
337 KOG2005 26S proteasome regulat 61.8 2.7E+02 0.0059 31.2 15.9 100 368-485 415-517 (878)
338 cd03567 VHS_GGA VHS domain fam 61.7 1.1E+02 0.0024 26.8 13.6 76 176-253 38-119 (139)
339 PF12612 TFCD_C: Tubulin foldi 61.4 1.4E+02 0.0031 28.0 11.5 112 88-206 3-115 (193)
340 cd03565 VHS_Tom1 VHS domain fa 61.3 1.2E+02 0.0025 26.8 10.9 77 608-684 37-119 (141)
341 KOG2973 Uncharacterized conser 59.9 49 0.0011 32.9 8.0 104 373-487 8-112 (353)
342 KOG2213 Apoptosis inhibitor 5/ 59.2 2.3E+02 0.0049 29.5 21.1 52 346-398 40-91 (460)
343 PLN03205 ATR interacting prote 58.4 2.3E+02 0.005 29.3 13.6 138 110-250 302-446 (652)
344 cd00197 VHS_ENTH_ANTH VHS, ENT 57.9 1.1E+02 0.0024 25.6 10.7 73 606-678 34-113 (115)
345 KOG2199 Signal transducing ada 57.1 1.2E+02 0.0026 31.3 10.3 101 375-489 19-121 (462)
346 cd03572 ENTH_epsin_related ENT 56.9 1.2E+02 0.0027 25.7 10.0 82 690-775 36-117 (122)
347 PF14868 DUF4487: Domain of un 56.4 3.3E+02 0.0072 30.5 26.7 285 345-640 243-554 (559)
348 COG5110 RPN1 26S proteasome re 56.3 3E+02 0.0065 30.0 17.2 301 370-736 415-719 (881)
349 PF04078 Rcd1: Cell differenti 55.3 1.4E+02 0.003 29.3 10.2 140 150-292 67-219 (262)
350 KOG2973 Uncharacterized conser 54.2 1.2E+02 0.0026 30.4 9.5 67 224-292 6-72 (353)
351 PF03542 Tuberin: Tuberin; In 52.7 3E+02 0.0064 28.8 16.9 118 191-330 210-328 (356)
352 PF08146 BP28CT: BP28CT (NUC21 52.5 1.3E+02 0.0028 27.0 9.1 78 627-704 39-120 (153)
353 cd06561 AlkD_like A new struct 51.7 57 0.0012 30.7 7.4 65 371-442 108-173 (197)
354 smart00567 EZ_HEAT E-Z type HE 51.6 29 0.00063 20.5 3.4 15 382-396 1-15 (30)
355 PF14911 MMS22L_C: S-phase gen 50.5 3.2E+02 0.007 28.7 21.2 37 647-683 253-290 (373)
356 PF11841 DUF3361: Domain of un 50.3 1.2E+02 0.0025 27.3 8.1 62 664-727 73-135 (160)
357 PF01465 GRIP: GRIP domain; I 49.8 37 0.00079 23.0 3.9 35 88-122 3-37 (46)
358 KOG3036 Protein involved in ce 49.8 2.5E+02 0.0055 27.2 13.7 143 149-293 95-249 (293)
359 KOG3723 PH domain protein Melt 48.8 4E+02 0.0086 29.2 14.5 30 714-743 182-211 (851)
360 KOG3678 SARM protein (with ste 48.0 1.7E+02 0.0037 30.9 10.0 152 95-250 183-336 (832)
361 PF03130 HEAT_PBS: PBS lyase H 47.8 23 0.0005 20.5 2.4 13 426-438 1-13 (27)
362 PF14961 BROMI: Broad-minded p 46.9 3.7E+02 0.008 32.8 13.5 135 130-272 160-315 (1296)
363 KOG1087 Cytosolic sorting prot 44.7 2.4E+02 0.0053 30.6 11.1 91 608-698 37-132 (470)
364 PF14676 FANCI_S2: FANCI solen 44.2 2.4E+02 0.0053 25.4 9.6 121 111-246 37-157 (158)
365 KOG3678 SARM protein (with ste 44.0 4.3E+02 0.0092 28.2 15.7 153 506-682 182-338 (832)
366 COG4912 Predicted DNA alkylati 43.9 1.3E+02 0.0029 28.4 7.8 81 355-442 104-186 (222)
367 PF11935 DUF3453: Domain of un 42.4 3.4E+02 0.0073 26.6 17.6 131 419-556 2-160 (239)
368 COG5209 RCD1 Uncharacterized p 42.4 35 0.00075 32.0 3.9 60 806-866 157-216 (315)
369 COG5369 Uncharacterized conser 41.8 49 0.0011 35.6 5.3 136 386-536 407-545 (743)
370 KOG1877 Putative transmembrane 41.7 6.4E+02 0.014 29.6 25.9 144 379-536 28-174 (819)
371 PF14222 MOR2-PAG1_N: Cell mor 40.1 5.9E+02 0.013 28.7 34.9 202 84-292 27-250 (552)
372 KOG2256 Predicted protein invo 39.9 6E+02 0.013 28.7 24.9 54 602-656 417-474 (661)
373 KOG2256 Predicted protein invo 39.9 6E+02 0.013 28.7 24.1 59 684-744 416-477 (661)
374 PF09759 Atx10homo_assoc: Spin 39.8 1.1E+02 0.0023 25.2 5.9 56 385-442 3-62 (102)
375 PF11935 DUF3453: Domain of un 39.5 3.8E+02 0.0082 26.3 16.4 104 190-293 5-147 (239)
376 PF10193 Telomere_reg-2: Telom 37.7 1.7E+02 0.0038 24.6 7.1 85 647-735 4-91 (114)
377 KOG2038 CAATT-binding transcri 37.4 7E+02 0.015 28.8 27.4 226 404-656 298-544 (988)
378 PF14868 DUF4487: Domain of un 37.2 6.5E+02 0.014 28.3 23.5 56 345-400 495-555 (559)
379 PF04499 SAPS: SIT4 phosphatas 36.8 2.8E+02 0.0061 30.5 10.4 75 792-870 61-147 (475)
380 smart00755 Grip golgin-97, Ran 36.8 74 0.0016 21.5 3.8 33 90-123 4-36 (46)
381 PF10193 Telomere_reg-2: Telom 36.4 2.2E+02 0.0047 24.0 7.5 72 470-547 18-89 (114)
382 cd00870 PI3Ka_III Phosphoinosi 35.7 1.8E+02 0.0038 26.5 7.3 51 81-143 72-124 (166)
383 PF07539 DRIM: Down-regulated 35.1 2.8E+02 0.0061 24.4 8.3 44 4-47 17-61 (141)
384 PF11919 DUF3437: Domain of un 34.4 1.1E+02 0.0024 24.4 5.1 59 625-685 5-63 (90)
385 PF12612 TFCD_C: Tubulin foldi 34.1 4E+02 0.0087 25.0 16.2 128 344-487 21-159 (193)
386 cd06561 AlkD_like A new struct 33.4 1.5E+02 0.0032 27.8 7.1 64 413-488 108-172 (197)
387 PF08713 DNA_alkylation: DNA a 33.1 4.3E+02 0.0093 25.0 15.4 149 16-205 32-182 (213)
388 PF04499 SAPS: SIT4 phosphatas 32.3 7.2E+02 0.016 27.4 14.3 32 651-682 63-94 (475)
389 KOG4346 Uncharacterized conser 31.8 2.1E+02 0.0045 32.2 8.1 82 647-733 509-590 (849)
390 KOG2051 Nonsense-mediated mRNA 31.7 1E+03 0.022 28.9 15.3 73 753-825 660-740 (1128)
391 PF11707 Npa1: Ribosome 60S bi 31.7 6.1E+02 0.013 26.3 16.3 157 133-292 58-238 (330)
392 KOG1087 Cytosolic sorting prot 31.3 2.4E+02 0.0052 30.7 8.5 78 455-539 35-115 (470)
393 PF04078 Rcd1: Cell differenti 30.1 1.9E+02 0.0042 28.3 6.9 59 807-866 108-166 (262)
394 cd00864 PI3Ka Phosphoinositide 29.4 2.3E+02 0.0049 25.4 6.9 55 6-64 42-96 (152)
395 PF04869 Uso1_p115_head: Uso1 28.8 2.7E+02 0.0058 28.5 8.1 196 622-846 51-250 (312)
396 KOG3687 Tuberin - Rap/ran-GTPa 28.5 1.1E+03 0.024 28.3 28.8 36 622-657 486-521 (1697)
397 PF14222 MOR2-PAG1_N: Cell mor 27.8 9.2E+02 0.02 27.2 35.7 150 576-733 145-308 (552)
398 KOG2011 Sister chromatid cohes 26.9 1.2E+03 0.027 28.4 29.9 145 222-394 283-432 (1048)
399 PF10487 Nup188: Nucleoporin s 26.9 1.2E+03 0.027 28.4 23.8 96 382-488 515-617 (931)
400 cd07920 Pumilio Pumilio-family 26.7 7.1E+02 0.015 25.5 15.7 17 406-422 39-55 (322)
401 KOG1789 Endocytosis protein RM 26.7 1.2E+03 0.027 28.3 26.3 179 192-398 1739-1924(2235)
402 PF10441 Urb2: Urb2/Npa2 famil 26.6 5.9E+02 0.013 24.5 13.4 42 686-727 149-190 (223)
403 PF06371 Drf_GBD: Diaphanous G 26.0 2.1E+02 0.0046 26.5 6.7 59 190-249 128-186 (187)
404 cd07354 HN_L-delphilin-R1_like 25.5 2.7E+02 0.0058 21.5 5.4 47 2-48 5-52 (80)
405 PF06371 Drf_GBD: Diaphanous G 25.2 2E+02 0.0043 26.7 6.3 55 382-438 130-186 (187)
406 PF06025 DUF913: Domain of Unk 25.0 7.1E+02 0.015 26.4 10.8 95 609-705 106-209 (379)
407 PRK04964 hypothetical protein; 25.0 1.9E+02 0.0041 20.8 4.2 52 672-723 5-60 (66)
408 COG5219 Uncharacterized conser 23.1 1.3E+03 0.029 27.5 19.1 97 193-291 59-156 (1525)
409 PF00613 PI3Ka: Phosphoinositi 23.0 1.9E+02 0.0041 26.9 5.4 51 9-63 51-101 (184)
410 cd03562 CID CID (CTD-Interacti 22.9 4.5E+02 0.0097 21.9 8.5 65 606-671 34-99 (114)
411 PF11640 TAN: Telomere-length 22.5 5.7E+02 0.012 22.9 9.1 91 97-188 9-119 (155)
412 cd03562 CID CID (CTD-Interacti 22.4 4E+02 0.0087 22.2 7.0 69 366-435 35-104 (114)
413 cd00869 PI3Ka_II Phosphoinosit 22.4 3.4E+02 0.0075 24.8 6.7 12 53-64 85-96 (169)
414 KOG3723 PH domain protein Melt 22.0 1.1E+03 0.024 26.1 18.0 82 582-677 182-263 (851)
415 KOG2059 Ras GTPase-activating 21.5 1.3E+03 0.027 26.6 12.3 32 347-378 359-391 (800)
416 PF06786 UPF0253: Uncharacteri 21.2 2.5E+02 0.0053 20.2 4.2 52 672-723 5-60 (66)
417 PF14663 RasGEF_N_2: Rapamycin 20.2 1.6E+02 0.0035 24.8 4.0 30 410-439 8-37 (115)
418 PF07539 DRIM: Down-regulated 20.2 6.1E+02 0.013 22.4 10.2 82 458-562 17-101 (141)
419 KOG1566 Conserved protein Mo25 20.1 9.4E+02 0.02 24.5 16.9 191 223-442 81-289 (342)
No 1
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-106 Score=818.71 Aligned_cols=849 Identities=46% Similarity=0.764 Sum_probs=791.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
|++.++|.+++|||+++|+.|+.+|.+++.+|+|+|+..|.++|.+.+.++..|..|++.|||.+..++..++.....+|
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW 80 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW 80 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhh
Q 002877 83 LAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCE 162 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 162 (872)
..++.+.|+++|+.+++.|..+.+..++.++++++.||..+.|++.||+++..+.....+++ ...++++++.++|++|+
T Consensus 81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~-~~~~k~~slealGyice 159 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQ-ASMVKESSLEALGYICE 159 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccccc-chHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999873 22589999999999999
Q ss_pred ccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHH
Q 002877 163 EISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAF 242 (872)
Q Consensus 163 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 242 (872)
++.|+.+ ..+.+.++..+.++....+++..||.+|++||.+.+++.+.+|.++.+++++++++++.+++++.+++.+++
T Consensus 160 ~i~pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~ 238 (859)
T KOG1241|consen 160 DIDPEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAF 238 (859)
T ss_pred cCCHHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHH
Confidence 9998888 889999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHhHHH-HHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhc--CCCCCCCCCCchHHHHHhH
Q 002877 243 ECLVSIASTYYEVLEPYMQT-LFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFE--NPETGDSDSPNYHFIEKAR 319 (872)
Q Consensus 243 ~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 319 (872)
.||..++..||+++.+|+.+ ++.+.+..+.+++++++.++++||+++|+.+.++..+- +...+.+ ..+.+|.+..+
T Consensus 239 ~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~-p~~~~fa~~a~ 317 (859)
T KOG1241|consen 239 QCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP-PSSKYFARQAL 317 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhhHHHHHHH
Confidence 99999999999999999996 99999999999999999999999999999888765432 2222211 13678999999
Q ss_pred HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCC
Q 002877 320 SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGP 399 (872)
Q Consensus 320 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 399 (872)
+.++|.+++.|+++++|+|+|+ |++.++|..||..+++.+++.+.|+++||+++.+++++|+.|+++.+++|++.++.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred hHhhHHHHHHHHhCCCCccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 9999999999999999888888 99999999999999999999999999999999999999999999999999999998
Q ss_pred CccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHHH
Q 002877 400 TIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCG 479 (872)
Q Consensus 400 ~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~ 479 (872)
.++.+.+.+.+.+|.++..+.|++-.||.++.|++|++++.+++ ......+...++..++..++|+|+|..++||
T Consensus 396 ~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e-----~~~n~~~l~~~l~~l~~gL~DePrva~N~CW 470 (859)
T KOG1241|consen 396 EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE-----AIINQELLQSKLSALLEGLNDEPRVASNVCW 470 (859)
T ss_pred chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh-----hcccHhhhhHHHHHHHHHhhhCchHHHHHHH
Confidence 88889999999999999999999999999999999999999997 5677889999999999999999999999999
Q ss_pred HHHHHHHhhccCCC---CCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q 002877 480 AIYYLAQGYEDAGP---SSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMG 556 (872)
Q Consensus 480 al~~l~~~~~~~~~---~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~ 556 (872)
++..+++.+....+ ..+...|+++.|+..|++...+.|.++.++|.+++++|+.+++.++ +.+.+...++.+.++.
T Consensus 471 Af~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st-~~vy~~v~~~~l~il~ 549 (859)
T KOG1241|consen 471 AFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST-DDVYPMVQKLTLVILE 549 (859)
T ss_pred HHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHH
Confidence 99999988763221 2445669999999999999988776678889999999999999999 9999999999999999
Q ss_pred HHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC-ChhHHHHHHHHHHH
Q 002877 557 RLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR-SSTVHEEAMLAIGA 635 (872)
Q Consensus 557 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~ 635 (872)
++.+.++.++.+.+|+....+++...|.+|+.+++++++ .+.++.++++..+++.++++ +..+.+.|+.+++.
T Consensus 550 kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~------~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~t 623 (859)
T KOG1241|consen 550 KLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS------DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVST 623 (859)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc------cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHH
Confidence 999999988888899999999999999999999999999 89999999999999999985 66789999999999
Q ss_pred HHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHH
Q 002877 636 LAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPIL 715 (872)
Q Consensus 636 l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 715 (872)
++...|+.|..|++.+.|+|...|++..+..|+..|+.++|++++.+++.+.||.+.++..|++.|+++..++++|..++
T Consensus 624 l~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~Il 703 (859)
T KOG1241|consen 624 LAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAIL 703 (859)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHH
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchh-hhhhhhhhHHHH
Q 002877 716 SCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSA-RAEVMMPYAQHL 794 (872)
Q Consensus 716 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~i 794 (872)
++||+|+.++|.+|.+|++.+++.+.++-....+ ..|.+..||.+++|+.+++++.|++.+++.. ....+.||++.|
T Consensus 704 S~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d--~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 704 SVFGDIALAIGADFEPYLEMVMPLLQQASSVQTD--PADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC--CCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 9999999999999999999999999988644333 3566778999999999999999999999954 456688999999
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 002877 795 LQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMINRVL 870 (872)
Q Consensus 795 l~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 870 (872)
++++.++..+++.++.+..+|+++||||+..+|+...+.++.++|++.|+++++++.+.+.|..|.||+..+-|++
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr~~ 857 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIKRQI 857 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 9999999888888899999999999999999999988889999999999999999999999999999999999876
No 2
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.8e-86 Score=648.10 Aligned_cols=844 Identities=33% Similarity=0.499 Sum_probs=748.6
Q ss_pred chHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 3 MEITQFLLA-AQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 3 ~~~~~~l~~-~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
.++.++.++ .+|||+++|..||.+|.+++..++..|+..+.+.|.+.+..+++|..|+++|||.+..+++.+.+.....
T Consensus 4 ~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qr 83 (858)
T COG5215 4 SEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQR 83 (858)
T ss_pred HHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHh
Confidence 356677776 4999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccH-HHHHHHHHHHHHh
Q 002877 82 WLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLA-ALKQATLETLGYV 160 (872)
Q Consensus 82 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~-~~r~~al~~l~~l 160 (872)
|..+++|.++++|...++.|.++.+...+.++++++.|++.+.|++.||+++..+.....+. .+ ..+..++.++++.
T Consensus 84 W~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~e--qp~~~k~~sl~~~gy~ 161 (858)
T COG5215 84 WLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDE--QPVSGKCESLGICGYH 161 (858)
T ss_pred hccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhcccc--CchHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886 44 4677899999999
Q ss_pred hhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHH
Q 002877 161 CEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQA 240 (872)
Q Consensus 161 ~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~ 240 (872)
|+...|+.+ ....+.++-.+...-..++++..||.++++||.+.+.+.+.+|..+.+++++++++++.++.++.++..+
T Consensus 162 ces~~Pe~l-i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~a 240 (858)
T COG5215 162 CESEAPEDL-IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHA 240 (858)
T ss_pred hhccCHHHH-HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHH
Confidence 999877666 5555666656555555555889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHhHHH-HHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhc--CCCCCCCCCCchHHHHH
Q 002877 241 AFECLVSIASTYYEVLEPYMQT-LFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFE--NPETGDSDSPNYHFIEK 317 (872)
Q Consensus 241 ~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 317 (872)
++.|+..++..||+++.+|++. ++.++...+++.+++++.+|++||+++|+.+.+...+. +++.. -+++.|...
T Consensus 241 afgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p---~qn~~fa~a 317 (858)
T COG5215 241 AFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVP---AQNHGFARA 317 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCc---hhhcchHHH
Confidence 9999999999999999999995 77888999999999999999999999999876654321 22111 134568788
Q ss_pred hHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhc
Q 002877 318 ARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLE 397 (872)
Q Consensus 318 ~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 397 (872)
....++|.+++.+.++++|.++|+ |++..+|..||..+++..|+.+...++.|+++.+++++|..|+++.+++|++.+
T Consensus 318 av~dvlP~lL~LL~~q~ed~~~Dd--Wn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~ 395 (858)
T COG5215 318 AVADVLPELLSLLEKQGEDYYGDD--WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMH 395 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCccccc--cchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhc
Confidence 888899999999999999998888 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHH
Q 002877 398 GPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKV 477 (872)
Q Consensus 398 ~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a 477 (872)
+...+.+.+++++.+|.+...+.|+.-.|+.+++||+|+++.+... ......++...+.+.+.++.|+|.+..++
T Consensus 396 gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~-----~i~p~~Hl~~~vsa~liGl~D~p~~~~nc 470 (858)
T COG5215 396 GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM-----IISPCGHLVLEVSASLIGLMDCPFRSINC 470 (858)
T ss_pred CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH-----hcCccccccHHHHHHHhhhhccchHHhhh
Confidence 9876778889999999999999999999999999999999999886 44556678888899999999999999999
Q ss_pred HHHHHHHHHhhccC-CCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q 002877 478 CGAIYYLAQGYEDA-GPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMG 556 (872)
Q Consensus 478 ~~al~~l~~~~~~~-~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~ 556 (872)
+|.+.++++++.+. ...+..+.++++.|+..|+...+... ++.+.|..+++++++++..++ +...+.+..+...++.
T Consensus 471 sw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~-Ne~n~R~s~fsaLgtli~~~~-d~V~~~~a~~~~~~~~ 548 (858)
T COG5215 471 SWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL-NESNLRVSLFSALGTLILICP-DAVSDILAGFYDYTSK 548 (858)
T ss_pred HHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Confidence 99999999887521 11267788999999999999887665 345679999999999999999 9999999999999999
Q ss_pred HHHHHHhh--hhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC-ChhHHHHHHHHH
Q 002877 557 RLGQTLEL--QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR-SSTVHEEAMLAI 633 (872)
Q Consensus 557 ~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l 633 (872)
++.+++.. +++..+|.....+++.+.+..+..+++..+. .+.+..+++++.+++.+.+. ...+.+..+.++
T Consensus 549 kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~------~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aI 622 (858)
T COG5215 549 KLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR------DIEDVEDQLMELFIRILESTKPTTAFGDVYTAI 622 (858)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC------CcccHHHHHHHHHHHHHhccCCchhhhHHHHHH
Confidence 99998765 4467778878889999999999999999999 88888899999999999988 456778889999
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchh
Q 002877 634 GALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPP 713 (872)
Q Consensus 634 ~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~ 713 (872)
+.+....++.|..|.+.++|++.+.+... +..+...|+.++|+++..++.+|.+|.+.+++.|.++|+++..++++|+.
T Consensus 623 sal~~sl~e~Fe~y~~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPa 701 (858)
T COG5215 623 SALSTSLEERFEQYASKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPA 701 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchH
Confidence 99999999999999999999999999654 55699999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHH
Q 002877 714 ILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQH 793 (872)
Q Consensus 714 ~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 793 (872)
++++||+|+..+|..|.+|++.++-.+.+.-+.. ++.++-+..||....+..+..++.|+..+++ +..+.+.||+..
T Consensus 702 iLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~--p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~-nr~~~v~Pyv~s 778 (858)
T COG5215 702 ILSVFGDIALAIGANFESYLDMIMMLFQQASELD--PHSDEVYVDDYRKNAVQLVNCAYVGIGDSSK-NRVRSVLPYVIS 778 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC--CCCCceeHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHhhhHHHH
Confidence 9999999999999999999999997776654432 3334444567888888888888989888877 346779999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhc
Q 002877 794 LLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRS-DDEQLKETAGWTQGMINRVLV 871 (872)
Q Consensus 794 il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~-~~~~~~~~a~~~~~~~~~~~~ 871 (872)
|+.++..+-.|++.++..-++++++|||++..+|...++.++.++||+++++..++- .+...++.|.|+.+...|++.
T Consensus 779 if~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~~~dWv~d~l~~~~~ki~sqqtkD~aRwa~eqvkrqlr 857 (858)
T COG5215 779 IFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGLDEDWVKDFLYGMMKKISSQQTKDSARWAAEQVKRQLR 857 (858)
T ss_pred HHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhccchHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHhc
Confidence 999999888888877777789999999999999999999999999999999985542 345578999999999999874
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-72 Score=602.85 Aligned_cols=795 Identities=20% Similarity=0.307 Sum_probs=642.4
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
+++.+++++++|||+++|++||+.|+....+ +.....|.+++.. +.++++|++|++++|+.+. +.|
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~--~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~-----------~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKT--EPLLPALAHILAT-SADPQVRQLAAVLLRKLLT-----------KHW 69 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcc--cchHHHHHHHHhc-CCChHHHHHHHHHHHHHHH-----------HHh
Confidence 5699999999999999999999999986666 4477888888877 5799999999999999885 479
Q ss_pred hcCChHHHHHHHHHHHHhhcC-CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhh
Q 002877 83 LAIDISYKSQVKDLLLRTLAS-PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVC 161 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 161 (872)
..++.+.++.||..|+..+.+ +.+.||++.|.+++.|++.++|. .||++++.|++..+|+ ++..|+.|+.+|..+.
T Consensus 70 ~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~--~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 70 SRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSP--NPSLRESALLILSSLP 146 (1075)
T ss_pred hcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCC--CcchhHHHHHHHHhhh
Confidence 999999999999999997665 57999999999999999999997 9999999999999999 9999999999999999
Q ss_pred hccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh-HH---HHHHHHHHHhhcCCcHHH
Q 002877 162 EEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEM-ER---NYIMKVVCETAKSKEVEI 237 (872)
Q Consensus 162 ~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~---~~ll~~l~~~~~~~~~~~ 237 (872)
+.+ +..+ .+|++.+.+.+.+++++ ++..||..|+++++.++.+..++-.... ++ +-+++++....++++.+.
T Consensus 147 ~~~-~~~~-~~~~~~l~~lf~q~~~d--~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~ 222 (1075)
T KOG2171|consen 147 ETF-GNTL-QPHLDDLLRLFSQTMTD--PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDA 222 (1075)
T ss_pred hhh-cccc-chhHHHHHHHHHHhccC--CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHH
Confidence 998 5666 88999999999999999 4555999999999999988752211111 11 225556666677888889
Q ss_pred HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC--CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHH
Q 002877 238 RQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG--DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFI 315 (872)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (872)
...++++|.+++...|+.+++++..++++++....+ -++.+|..|++|+..+++..+ .+.| ..
T Consensus 223 a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap-----------~~~k----~~ 287 (1075)
T KOG2171|consen 223 AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP-----------AMCK----KL 287 (1075)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH-----------HHhh----hc
Confidence 999999999999999999999999999988777655 578999999999999999733 1122 22
Q ss_pred HHhHHhhHHHHHHHHhcccCC-------cccCCCCcchhhhHHHHHHHHHhhcC-CcchhchHHHHHhhccCCCcchHHH
Q 002877 316 EKARSSLVPMLLETLLKQEED-------QDQDDSIWNISMAGGTCLGLVARTVG-DEVVPLVMPFVEANIVKSDWRCREA 387 (872)
Q Consensus 316 ~~~l~~l~~~l~~~l~~~~~d-------~~~d~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~a 387 (872)
.++...+++.++..|++.++| +.|||+..+....|.+++++++..+| +.+.|.+++.+...+++++|+.|+|
T Consensus 288 ~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 288 ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 336678999999999875544 11223335677889999999999987 9999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHh
Q 002877 388 ATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESI 467 (872)
Q Consensus 388 al~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 467 (872)
++++++++++|+. +.+.+.++++++.++..++|+||+||++|+.++|+++..+.. .....+...+.+.|...+
T Consensus 368 aL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p------~iqk~~~e~l~~aL~~~l 440 (1075)
T KOG2171|consen 368 ALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP------EIQKKHHERLPPALIALL 440 (1075)
T ss_pred HHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH------HHHHHHHHhccHHHHHHh
Confidence 9999999999996 889999999999999999999999999999999999987774 223344455666777888
Q ss_pred hc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHH
Q 002877 468 KD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQ 545 (872)
Q Consensus 468 ~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~ 545 (872)
.+ +++|+.+|+.++-++.+.+. ++.+.||++.++...+..+. ++....++..+..+|++++..++ ..+.+
T Consensus 441 d~~~~~rV~ahAa~al~nf~E~~~-----~~~l~pYLd~lm~~~l~~L~--~~~~~~v~e~vvtaIasvA~AA~-~~F~p 512 (1075)
T KOG2171|consen 441 DSTQNVRVQAHAAAALVNFSEECD-----KSILEPYLDGLMEKKLLLLL--QSSKPYVQEQAVTAIASVADAAQ-EKFIP 512 (1075)
T ss_pred cccCchHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHHHh-hhhHh
Confidence 77 89999999999999999885 88899999999997777665 33457789999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHH---ccCC
Q 002877 546 IIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF---ACRS 622 (872)
Q Consensus 546 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l---~~~~ 622 (872)
|++.+||.+...+.+.. + +....+|.+.+++++.+...+|++ .+.|+..++++.++... .+.+
T Consensus 513 Y~d~~Mp~L~~~L~n~~--------~-~d~r~LrgktmEcisli~~AVGke-----~F~~~a~eliqll~~~~~~~~~~d 578 (1075)
T KOG2171|consen 513 YFDRLMPLLKNFLQNAD--------D-KDLRELRGKTMECLSLIARAVGKE-----KFLPLAEELIQLLLELQGSDQDDD 578 (1075)
T ss_pred HHHHHHHHHHHHHhCCC--------c-hhhHHHHhhHHHHHHHHHHHhhhh-----hhhHhHHHHHHHHHhhcccchhhc
Confidence 99999999999988641 1 234568899999999999999986 89999999999999984 3336
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccc--------h---------------------------HhH
Q 002877 623 STVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSE--------E---------------------------YQV 667 (872)
Q Consensus 623 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~--------~---------------------------~~v 667 (872)
...+...+.+++++++..|++|.||++.++|.+++..+... + .+-
T Consensus 579 d~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~e 658 (1075)
T KOG2171|consen 579 DPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDE 658 (1075)
T ss_pred cccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHH
Confidence 77889999999999999999999999999999987553210 0 024
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc-------cchhhhHHHHHHHH
Q 002877 668 CAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG-------VHFEKYVPHALQMM 740 (872)
Q Consensus 668 ~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~l~~i~~~l 740 (872)
+..||..|+.++...+..|.||+.+++...+..+.-. ++..+|.+++.++..++.... ....+....+.+.+
T Consensus 659 K~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~-fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l 737 (1075)
T KOG2171|consen 659 KETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFY-FHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPAL 737 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999666655543 378899999998888865432 11222223333333
Q ss_pred HHHHHhcccc------------------------------------------------------CCCchHHHHHHHHHHH
Q 002877 741 QEAAKACAQL------------------------------------------------------DMEDEELIDYGNQLRS 766 (872)
Q Consensus 741 ~~~~~~~~~~------------------------------------------------------~~~d~~~~~~~~~~~~ 766 (872)
+..+..+++. +++|.+.++...+...
T Consensus 738 ~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~ 817 (1075)
T KOG2171|consen 738 IKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDA 817 (1075)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhH
Confidence 3333322211 0011111111112233
Q ss_pred HHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHH
Q 002877 767 SIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSE 846 (872)
Q Consensus 767 ~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~ 846 (872)
..++...+++.++....+..|.|++..+.+.+...+..+...+ |++++++++|++..+|+... ++...+.+.++..
T Consensus 818 ~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~--r~~av~~~~d~ie~~~~a~~--~~~~~~~p~~~~~ 893 (1075)
T KOG2171|consen 818 YLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA--RQWAVCIFDDLIEGCGEASA--KYKERFLPLVLEA 893 (1075)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHH
Confidence 4455555555555555555688999999988888876644433 99999999999999999865 5667677777775
Q ss_pred HhcCCcHHHHHHHHHHHHHHHH
Q 002877 847 CLRSDDEQLKETAGWTQGMINR 868 (872)
Q Consensus 847 ~~~~~~~~~~~~a~~~~~~~~~ 868 (872)
+.|.+|+||++|+||+|.+++
T Consensus 894 -~~d~~pEVRqaAsYGiGvlaq 914 (1075)
T KOG2171|consen 894 -LQDSDPEVRQAAAYGMGVLAQ 914 (1075)
T ss_pred -cCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-73 Score=569.30 Aligned_cols=744 Identities=20% Similarity=0.334 Sum_probs=618.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-CCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNN-EKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~-~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
+|+.++|++.+|||+++|+.+...+.++... |+|..+|+.+|.+. +.+..+|..|+.+|||.++ ..
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~--pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr-----------~~ 79 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLF--PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVR-----------GH 79 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcc--cchhceeeEEEecccccchhHHHHhhhhHhcccc-----------cc
Confidence 4789999999999999999999999999987 99999999998763 4578899999999999986 45
Q ss_pred hhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhh
Q 002877 82 WLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVC 161 (872)
Q Consensus 82 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 161 (872)
|..++++...++|...++.+.+.++.+|...+.++..|+...+- +.||+++|.|.+.+.++ +....++|+..|+.+|
T Consensus 80 ~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~--d~n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 80 YNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSP--DYNTCEGAFGALQKIC 156 (885)
T ss_pred ccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCC--cccccchhHHHHHHHH
Confidence 78889999999999999999999999999999999999988765 59999999999999998 7778899999999999
Q ss_pred hccCccccc----hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHH
Q 002877 162 EEISHQDLV----QDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEI 237 (872)
Q Consensus 162 ~~~~~~~l~----~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 237 (872)
++.. +.+. .+.++.++|.+++.+++ +++.+|..|+.|+..++..-...+.. ..+.+++.++.+.+++++++
T Consensus 157 EDsa-~~lds~~~~rpl~~mipkfl~f~~h--~spkiRs~A~~cvNq~i~~~~qal~~--~iD~Fle~lFalanD~~~eV 231 (885)
T KOG2023|consen 157 EDSA-QFLDSDVLTRPLNIMIPKFLQFFKH--PSPKIRSHAVGCVNQFIIIQTQALYV--HIDKFLEILFALANDEDPEV 231 (885)
T ss_pred hhhH-HHHhhhcccCchHHhHHHHHHHHhC--CChhHHHHHHhhhhheeecCcHHHHH--HHHHHHHHHHHHccCCCHHH
Confidence 9873 3331 46688899999999999 78999999999999987532222211 12348889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHH
Q 002877 238 RQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEK 317 (872)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (872)
|+.+|..+.-+.+..++.+.||+..++++++...++.+++++..|++||.++++... +.+.+.+
T Consensus 232 Rk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi----------------~~~~L~p 295 (885)
T KOG2023|consen 232 RKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI----------------CKEVLQP 295 (885)
T ss_pred HHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC----------------cHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999642 3567889
Q ss_pred hHHhhHHHHHHHHhcccCC----------------------------------------ccc----CC---CCcchhhhH
Q 002877 318 ARSSLVPMLLETLLKQEED----------------------------------------QDQ----DD---SIWNISMAG 350 (872)
Q Consensus 318 ~l~~l~~~l~~~l~~~~~d----------------------------------------~~~----d~---~~~~~r~~a 350 (872)
+++.++|+++..|.+.++| ++| |+ ..|+.|+++
T Consensus 296 ~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCS 375 (885)
T KOG2023|consen 296 YLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCS 375 (885)
T ss_pred HHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhcc
Confidence 9999999999887643211 011 11 469999999
Q ss_pred HHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHH
Q 002877 351 GTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTT 430 (872)
Q Consensus 351 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a 430 (872)
+.+|+.++..+|+++++.++|++++.+.+++|.+|+++++++|+|++||+ +.+.++++.++|++++.|+|..|.||..+
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-~g~~p~LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-QGFVPHLPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-hhcccchHHHHHHHHHHhccCccceeeee
Confidence 99999999999999999999999999999999999999999999999997 89999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHH
Q 002877 431 AWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAEL 509 (872)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l 509 (872)
||+|+|++.|.... ....|+.+++..++..+.| |++|+++||.++..+-+.. +..+.||+..|+..+
T Consensus 455 CWTLsRys~wv~~~------~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A------~~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQD------SRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA------GEELVPYLEYILDQL 522 (885)
T ss_pred eeeHhhhhhhHhcC------ChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHH
Confidence 99999999999862 3558999999999999988 9999999999999999988 899999999999999
Q ss_pred HHhhccCCCcchhHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHH----------
Q 002877 510 LRAADRTDVGGSKLRSAAYETLNEVVRCSN-ITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDL---------- 578 (872)
Q Consensus 510 ~~~l~~~~~~~~~vr~~a~~al~~l~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~---------- 578 (872)
..+++.+..++ ....++|+++++.+.| .-+-..|++.+||+++++|+.. +++|++-++-+
T Consensus 523 ~~af~kYQ~KN---LlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~l------sd~DKdLfPLLEClSsia~AL 593 (885)
T KOG2023|consen 523 VFAFGKYQKKN---LLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELL------SDSDKDLFPLLECLSSIASAL 593 (885)
T ss_pred HHHHHHHhhcc---eehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhc------CcccchHHHHHHHHHHHHHHH
Confidence 99999887544 3478999999999987 1245779999999999999875 23332211100
Q ss_pred -------------------H-----------------------HHHHHHHHHHHHHcCCCccchhhchhhH--HHHHHHH
Q 002877 579 -------------------Q-----------------------ASLCGVLQVIIQKFSSTDATKSFILQTA--DQIMVLF 614 (872)
Q Consensus 579 -------------------~-----------------------~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l 614 (872)
+ ...+..++++++++|. .+.+.+ ..+++.+
T Consensus 594 ~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~------~ie~Lva~snl~~ll 667 (885)
T KOG2023|consen 594 GVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGS------HIEPLVAQSNLLDLL 667 (885)
T ss_pred hccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhh------chHHHhhhccHHHHH
Confidence 0 1122234444444444 344433 2477888
Q ss_pred HHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 002877 615 LRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIM 694 (872)
Q Consensus 615 ~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~ 694 (872)
++|+.+..++||++++..+|.+++.+.+++.|++..++|.+...+.. +...++.+|+|++|.++..+|.++.+|+..++
T Consensus 668 l~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~-~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl 746 (885)
T KOG2023|consen 668 LQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNP-ENISVCNNAIWAIGEIALKMGLKMKQYVSPVL 746 (885)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCCh-hhchHHHHHHHHHHHHHHHhchhhhhHHHHHH
Confidence 88888888999999999999999999999999999999999877654 45669999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHh
Q 002877 695 SLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSG 774 (872)
Q Consensus 695 ~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 774 (872)
..|+.+++.+..+..+.++....+|+++...|+.++++++.++..++..++.-.|. +.+++ ++.|
T Consensus 747 ~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~Dn------------eEK~s---AFrG 811 (885)
T KOG2023|consen 747 EDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDN------------EEKES---AFRG 811 (885)
T ss_pred HHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccc------------hhHHH---HHHH
Confidence 99999999876677888999999999999999999999999999999988764321 23444 4556
Q ss_pred HhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchh
Q 002877 775 ILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTK 831 (872)
Q Consensus 775 ~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 831 (872)
++..++-+ +..+..-+..+-..+.. +.+ +.+++|.....++-.....+|....
T Consensus 812 ~c~mi~vN-p~~vv~~~~f~c~aiAs-w~n--p~~~l~~~f~kiL~g~k~qvg~~nW 864 (885)
T KOG2023|consen 812 LCNMINVN-PSGVVSSFIFICDAIAS-WSN--PEDDLRDEFYKILQGFKNQVGKINW 864 (885)
T ss_pred HHHheeeC-chhhhhhhHHHHHHHhc-ccC--hHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 66555433 11222222333333333 233 5588999888888888888886543
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-35 Score=311.78 Aligned_cols=698 Identities=15% Similarity=0.196 Sum_probs=492.5
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 2 AMEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 2 ~~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
.+.+.+++.++.++|++.|+.||+.|+++.++ |+|+..|++|+.+.+.+..+|+.|++.|||.+.+.|+.+.. +..
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~--pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~--~g~ 78 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ--PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEA--PGR 78 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCC--CCC
Confidence 46799999999999999999999999999999 99999999999988889999999999999999999987641 111
Q ss_pred hhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhh
Q 002877 82 WLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVC 161 (872)
Q Consensus 82 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 161 (872)
=..+.++.|..+|+.++..+...++.+|.+...++..|...++| +.|+++++.+...++++ +.....+|+.|+.+++
T Consensus 79 ~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~--~~~~vy~aLl~l~qL~ 155 (1010)
T KOG1991|consen 79 PFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQ--DANHVYGALLCLYQLF 155 (1010)
T ss_pred cCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCc--chhhHHHHHHHHHHHH
Confidence 23588999999999999999999999999999999999999999 59999999999999998 8888999999999999
Q ss_pred hccC------ccccc---hhhHHHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHhh
Q 002877 162 EEIS------HQDLV---QDEVNAVLTAVVQGMNLA-EHSAEVRLAATRALYNALDF-ALTNFQNEMERNYIMKVVCETA 230 (872)
Q Consensus 162 ~~~~------~~~l~---~~~~~~l~~~l~~~l~~~-~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~ll~~l~~~~ 230 (872)
+... .+.++ ...++.+++.+.+.+.+. ..+.++.+..+|.+.+++.+ ++..+.........++.....+
T Consensus 156 k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~ 235 (1010)
T KOG1991|consen 156 KTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL 235 (1010)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH
Confidence 8754 12220 334455555555566553 13566777788888777653 1111111111111222222222
Q ss_pred c--------C---------CcHHHHHHHHHHHHHHHHhhhhh---------hH-----HhHHHHHHHHHHHh---cC---
Q 002877 231 K--------S---------KEVEIRQAAFECLVSIASTYYEV---------LE-----PYMQTLFELTSNAV---KG--- 273 (872)
Q Consensus 231 ~--------~---------~~~~~~~~~~~~l~~l~~~~~~~---------~~-----~~l~~l~~~~~~~~---~~--- 273 (872)
+ + +-.+.++.|+..+..+.++|++. |. .+...+.+..+..+ +.
T Consensus 236 ~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~y 315 (1010)
T KOG1991|consen 236 NRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLY 315 (1010)
T ss_pred cCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 1 22357789999999999887432 11 22222333222221 11
Q ss_pred CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhH-HHHHHHHhcccCCcc---cC---------
Q 002877 274 DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLV-PMLLETLLKQEEDQD---QD--------- 340 (872)
Q Consensus 274 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~l~~~l~~~~~d~~---~d--------- 340 (872)
..+++-..++.|+...+.... .+++++|.+..++ .+++..|+..++|.+ +|
T Consensus 316 ls~rvl~~~l~fl~~~Vs~~~----------------twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~ 379 (1010)
T KOG1991|consen 316 LSDRVLYYLLNFLEQCVSHAS----------------TWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKF 379 (1010)
T ss_pred CCHHHHHHHHHHHHHhccHHH----------------HHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcC
Confidence 356777778888877766533 1456777777544 456667766555432 11
Q ss_pred ---CCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhcc------C--CCcchHHHHHHHHHHhhcCCCccc-hhHhH
Q 002877 341 ---DSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIV------K--SDWRCREAATYAFGSVLEGPTIDK-LAPLV 408 (872)
Q Consensus 341 ---~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~--~~~~~r~aal~~l~~i~~~~~~~~-~~~~l 408 (872)
++..+++.||..++..++..-|+..+|.+++++.+.+. . .+++.+++|+.++|++++...++. .+..+
T Consensus 380 Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m 459 (1010)
T KOG1991|consen 380 DIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM 459 (1010)
T ss_pred chhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH
Confidence 14568889999999999999999999999988887776 2 358889999999999997665332 23344
Q ss_pred H-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHh-hccCCCCCccccCcccHHHHHHHHHHHhh-c-ChHHHHHHHHHHHHH
Q 002877 409 H-AGFDFLLNAMRDENNHVKDTTAWTLSRIFE-LLHCPATGFSVISPENLQRILTVLLESIK-D-APNVAEKVCGAIYYL 484 (872)
Q Consensus 409 ~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d-~~~v~~~a~~al~~l 484 (872)
. -+++.++..++++-...|..|||.+++++. -++ ....+.++++...+++. | +-.|+..|+.|+..+
T Consensus 460 E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~---------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 460 EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK---------DPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC---------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 4 677889999999999999999999999994 333 24567788888888888 5 778999999999999
Q ss_pred HHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhh
Q 002877 485 AQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLEL 564 (872)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 564 (872)
..+.. .....+.++++.+++.+++..+..++ .....++..++...+ ++..|+..++...+.+.+.+.++.
T Consensus 531 I~~~~---~~~e~~~~hvp~~mq~lL~L~ne~En------d~Lt~vme~iV~~fs-eElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 531 ISNQE---QADEKVSAHVPPIMQELLKLSNEVEN------DDLTNVMEKIVCKFS-EELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred Hhcch---hhhhhHhhhhhHHHHHHHHHHHhcch------hHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHhc
Confidence 98863 11355899999999999999986552 345677888888888 899999999999999998888764
Q ss_pred hhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHH
Q 002877 565 QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEF 644 (872)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~ 644 (872)
..-..+..+...-....++.++.+++.++.+. +..+...-+.+++.+..++.+.-.++.+.++.....+.... ..+
T Consensus 601 ~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~---p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~-~~I 676 (1010)
T KOG1991|consen 601 SEDEDESDDDKAIAASGILRTISTILLSLENH---PEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS-KEI 676 (1010)
T ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh-ccc
Confidence 11111111111222345667888888777662 11222233466777777777776777777777766654322 334
Q ss_pred HhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHH
Q 002877 645 AKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKV---LPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDI 721 (872)
Q Consensus 645 ~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~---~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l 721 (872)
.|-+=.+++.+.+.+++. ..+--....-++.+++...+..+ ..|...+...+.+.+.+.....+=...++..+..+
T Consensus 677 sp~mW~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~i 755 (1010)
T KOG1991|consen 677 SPIMWGLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVI 755 (1010)
T ss_pred CHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 555556777777666653 23333444455555544333222 23455666677777776532333345678999999
Q ss_pred HHhhccchhhhHHHHHHHHHHHHHh
Q 002877 722 ALAIGVHFEKYVPHALQMMQEAAKA 746 (872)
Q Consensus 722 ~~~~~~~~~~~l~~i~~~l~~~~~~ 746 (872)
...+++...+|++.++......++.
T Consensus 756 iL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 756 ILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 9999888888888888888887765
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-35 Score=318.09 Aligned_cols=660 Identities=19% Similarity=0.240 Sum_probs=490.4
Q ss_pred HHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhH
Q 002877 95 DLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEV 174 (872)
Q Consensus 95 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~ 174 (872)
..|++.|.+++..+|+.|-+.+..+.+.. . +++.|...+.... ++..|..|+-.+.+++... ...+.....
T Consensus 7 ~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~-~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~ 77 (1075)
T KOG2171|consen 7 EQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSA-DPQVRQLAAVLLRKLLTKH-WSRLSAEVQ 77 (1075)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH-hhcCCHHHH
Confidence 46778888899999999999999887443 2 7777877776542 7889999988888877664 222325556
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYE 254 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 254 (872)
.++-..++..+... +.+.||....+....+....-+ . ..+.+++.++++++++++..|..++.+|..+....+.
T Consensus 78 ~siks~lL~~~~~E-~~~~vr~k~~dviAeia~~~l~---e--~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~ 151 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSE-TEPSVRHKLADVIAEIARNDLP---E--KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN 151 (1075)
T ss_pred HHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccc---c--chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence 67777777777764 5779999988888887653322 2 2355999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhccc
Q 002877 255 VLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQE 334 (872)
Q Consensus 255 ~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 334 (872)
.+.+|+..+.+++..++.+++..+|..|...+..++..... ..-..+.+..++|-++..+...-
T Consensus 152 ~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~----------------~~~~~~~~~~llP~~l~vl~~~i 215 (1075)
T KOG2171|consen 152 TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN----------------NKSEVDKFRDLLPSLLNVLQEVI 215 (1075)
T ss_pred ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc----------------chHHHHHHHHHhHHHHHHhHhhh
Confidence 99999999999999999998777999999988888765210 00112223345554444443322
Q ss_pred CCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHH---HHHhhccCC--CcchHHHHHHHHHHhhcCCC--ccchhHh
Q 002877 335 EDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMP---FVEANIVKS--DWRCREAATYAFGSVLEGPT--IDKLAPL 407 (872)
Q Consensus 335 ~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~---~l~~~l~~~--~~~~r~aal~~l~~i~~~~~--~~~~~~~ 407 (872)
.+.| ......+.+++..+....|+-+-|.+-. +..+...+. +-..|..|+-++-++++... -+...++
T Consensus 216 ~~~d-----~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~ 290 (1075)
T KOG2171|consen 216 QDGD-----DDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALL 290 (1075)
T ss_pred hccc-----hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhh
Confidence 1111 1234556777888887777655555443 333333443 45678999988888887631 1334557
Q ss_pred HHhHHHHHHHhcCCCc----------------HHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-C
Q 002877 408 VHAGFDFLLNAMRDEN----------------NHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-A 470 (872)
Q Consensus 408 l~~l~~~l~~~l~d~~----------------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~ 470 (872)
.+++++.++..+.+.. ..-...|..++.+++..++. ...++.+++.+-..+.+ +
T Consensus 291 ~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g---------~~v~p~~~~~l~~~l~S~~ 361 (1075)
T KOG2171|consen 291 GHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG---------KQVLPPLFEALEAMLQSTE 361 (1075)
T ss_pred hccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh---------hhehHHHHHHHHHHhcCCC
Confidence 8899999998873211 22456778889999887764 45788899999999998 9
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 002877 471 PNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAEL 550 (872)
Q Consensus 471 ~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l 550 (872)
++-|.++..+|+.+++++ ++.+.+.+++|++.+++.++ | ....||.+|+.|++.+....+ .++..++.+.
T Consensus 362 w~~R~AaL~Als~i~EGc------~~~m~~~l~~Il~~Vl~~l~--D-phprVr~AA~naigQ~stdl~-p~iqk~~~e~ 431 (1075)
T KOG2171|consen 362 WKERHAALLALSVIAEGC------SDVMIGNLPKILPIVLNGLN--D-PHPRVRYAALNAIGQMSTDLQ-PEIQKKHHER 431 (1075)
T ss_pred HHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHhhcC--C-CCHHHHHHHHHHHHhhhhhhc-HHHHHHHHHh
Confidence 999999999999999998 88889999999999999998 3 347789999999999999998 7777766655
Q ss_pred HH-HHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHH-HHHHHHccCChhHHHH
Q 002877 551 LP-AIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMV-LFLRVFACRSSTVHEE 628 (872)
Q Consensus 551 ~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~~v~~~ 628 (872)
+| .++..+... ....++.+++.++.++.....++ .+.||++.+++ .+..++.+..+.+++.
T Consensus 432 l~~aL~~~ld~~------------~~~rV~ahAa~al~nf~E~~~~~-----~l~pYLd~lm~~~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 432 LPPALIALLDST------------QNVRVQAHAAAALVNFSEECDKS-----ILEPYLDGLMEKKLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred ccHHHHHHhccc------------CchHHHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 54 565555532 22356778888888877666554 89999999999 5665666778999999
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccc---hHhHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHHHHhcCC
Q 002877 629 AMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSE---EYQVCAITVGVVGDVCRALD-DKVLPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 629 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~ 704 (872)
++.+|+++|.+.+..|.||++.++|.|.+.+.+.+ ...+|...+.+++-++.+.| +.|.|+...+++.+...-.+.
T Consensus 495 vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~ 574 (1075)
T KOG2171|consen 495 AVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSD 574 (1075)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999998754 35688889999999999998 899999999999988863221
Q ss_pred -CCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccC---CCchH------HHHH-------HHHHHHH
Q 002877 705 -QLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLD---MEDEE------LIDY-------GNQLRSS 767 (872)
Q Consensus 705 -~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~---~~d~~------~~~~-------~~~~~~~ 767 (872)
+.+...+...+.+++++|..+|++|.||++.+||.++...+.+++.. ++|++ ..++ .-.+|.+
T Consensus 575 ~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Ts 654 (1075)
T KOG2171|consen 575 QDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTS 654 (1075)
T ss_pred hhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeeh
Confidence 22677889999999999999999999999999999999987654321 11111 0001 1123444
Q ss_pred HHHHHHhHhhccchh---hhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhC
Q 002877 768 IFEAYSGILQGFKSA---RAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALG 827 (872)
Q Consensus 768 ~~~~~~~~~~~l~~~---~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 827 (872)
.++.....+..++.. .+..|.||+..+++.....+ ....++.+|++++.++..++...-
T Consensus 655 vl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l-~f~fhdgVR~aa~~~~p~ll~~~~ 716 (1075)
T KOG2171|consen 655 VLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLL-KFYFHDGVRKAAAESMPQLLTCAL 716 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444332 34569999999998333332 234789999999999999876544
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-31 Score=267.61 Aligned_cols=679 Identities=15% Similarity=0.162 Sum_probs=479.1
Q ss_pred HHHHHHHHHHHhcC-CCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhh---cCCChhHhhH
Q 002877 36 PGFLLSLSVELVNN-EKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTL---ASPVPEARHT 111 (872)
Q Consensus 36 ~~~~~~l~~il~~~-~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l---~~~~~~vr~~ 111 (872)
++.+..++++|.+. +++..+|..+...+.+.-. -|+.- +-|.-.| .+.+..+|+.
T Consensus 9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-----------------~pdfn----nYL~~IL~~~~~~d~~~Rs~ 67 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-----------------FPDFN----NYLIYILIRAKSEDVPTRSL 67 (885)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-----------------ccchh----ceeeEEEecccccchhHHHH
Confidence 67778888888875 4467888877666654321 11111 1222222 2356777888
Q ss_pred HHHHHHHHHHhhcCCCCchH----HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccC
Q 002877 112 SAQVIAKIASIEIPQKQWPE----LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNL 187 (872)
Q Consensus 112 ~~~~l~~i~~~~~p~~~~~~----ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~ 187 (872)
++-++..=.+..++. .-++ .-..++..+.+. ++.+|...=.+++.++...+ ..+++.++|.+.+.+.+
T Consensus 68 aGLlLKNnvr~~~~~-~~~~~~~yiKs~~l~~lgd~--~~lIr~tvGivITTI~s~~~-----~~~wpelLp~L~~~L~s 139 (885)
T KOG2023|consen 68 AGLLLKNNVRGHYNS-IPSEVLDYIKSECLHGLGDA--SPLIRATVGIVITTIASTGG-----LQHWPELLPQLCELLDS 139 (885)
T ss_pred hhhhHhccccccccC-CChHHHHHHHHHHHhhccCc--hHHHHhhhhheeeeeecccc-----cccchhHHHHHHHHhcC
Confidence 888887766554432 1122 334455666666 66666555455555554432 57889999999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 002877 188 AEHSAEVRLAATRALYNALDFALTNFQNE---MERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLF 264 (872)
Q Consensus 188 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (872)
++.....-|+.+|..+.+-....++.+ ...+.+++.+++..+++.+.+|..|+.|+..++-..+..+-.+++.++
T Consensus 140 --~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fl 217 (885)
T KOG2023|consen 140 --PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFL 217 (885)
T ss_pred --CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence 666788889999988765322222221 113458888999999999999999999999998877777878888888
Q ss_pred HHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCc
Q 002877 265 ELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIW 344 (872)
Q Consensus 265 ~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~ 344 (872)
+.+.....|+++++|...+..+.-+.+..++ .+-+.+..++...+...++.+|
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llevr~d------------------kl~phl~~IveyML~~tqd~dE--------- 270 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEVRPD------------------KLVPHLDNIVEYMLQRTQDVDE--------- 270 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhcHH------------------hcccchHHHHHHHHHHccCcch---------
Confidence 8887777999999999888777777765331 2345556677776665543322
Q ss_pred chhhhHHHHHHHHHhhc-CC----cchhchHHHHHhhcc-----------------------------------------
Q 002877 345 NISMAGGTCLGLVARTV-GD----EVVPLVMPFVEANIV----------------------------------------- 378 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~-~~----~~~~~l~~~l~~~l~----------------------------------------- 378 (872)
++.--|.++.-.+++.- +. ..++.++|.+.+.+.
T Consensus 271 ~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~ 350 (885)
T KOG2023|consen 271 NVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDA 350 (885)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccc
Confidence 35555666666665542 11 112223333333221
Q ss_pred -----C----------CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 379 -----K----------SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 379 -----~----------~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
+ .+|..|+.+..++..++...+ + ..++.++|.+-+.|..+++.||+++..++|.+++.+-.
T Consensus 351 ~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~-~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~ 426 (885)
T KOG2023|consen 351 DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG-D---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ 426 (885)
T ss_pred ccccccccccccccccccccHhhccHHHHHHHHHhhH-H---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh
Confidence 0 129999999999999998775 3 35778899999999999999999999999999998876
Q ss_pred CCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchh
Q 002877 444 PATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSK 522 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~ 522 (872)
...++++.+++.++.++.| .+-||..+||.++++..... .+.-..|+..++..+++.+- | .+..
T Consensus 427 -------g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~-----~~~~~~~f~pvL~~ll~~ll--D-~NK~ 491 (885)
T KOG2023|consen 427 -------GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV-----QDSRDEYFKPVLEGLLRRLL--D-SNKK 491 (885)
T ss_pred -------hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHh-----cCChHhhhHHHHHHHHHHHh--c-ccHH
Confidence 6778999999999999999 99999999999999998763 33344677788888887776 3 5678
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhh
Q 002877 523 LRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSF 602 (872)
Q Consensus 523 vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 602 (872)
|+.+|..|+.++-...+ .+..||++.++..+.-.+.+.-. .++ .....++++++.++|. .
T Consensus 492 VQEAAcsAfAtleE~A~-~eLVp~l~~IL~~l~~af~kYQ~------------KNL-lILYDAIgtlAdsvg~------~ 551 (885)
T KOG2023|consen 492 VQEAACSAFATLEEEAG-EELVPYLEYILDQLVFAFGKYQK------------KNL-LILYDAIGTLADSVGH------A 551 (885)
T ss_pred HHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhh------------cce-ehHHHHHHHHHHHHHH------h
Confidence 89999999999999999 99999999999998887776411 111 1234688888888877 3
Q ss_pred c--hhhHHHHHHHHHHHHc---cCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHh--------------------
Q 002877 603 I--LQTADQIMVLFLRVFA---CRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQM-------------------- 657 (872)
Q Consensus 603 ~--~~~~~~l~~~l~~~l~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~-------------------- 657 (872)
+ ..|++.+++.|++-.+ +.+.++ -.-+.++++++.+.+..|.||.+.++...+.
T Consensus 552 Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~ 630 (885)
T KOG2023|consen 552 LNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEA 630 (885)
T ss_pred cCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence 3 2366677777766543 333333 2336777778777777777776654443322
Q ss_pred ---------------------------------------hhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 002877 658 ---------------------------------------GLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLL 698 (872)
Q Consensus 658 ---------------------------------------~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 698 (872)
++.+ +.++||+++..++|++.+.+.+...|++.++++.+.
T Consensus 631 pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D-~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg 709 (885)
T KOG2023|consen 631 PDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD-EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILG 709 (885)
T ss_pred CCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 2222 235799999999999999999999999999999988
Q ss_pred HHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhc
Q 002877 699 NALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQG 778 (872)
Q Consensus 699 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 778 (872)
..+... .-++-.+|++++|.|+..+|....+|+..++..+...++..-. ..+.++-..--++-
T Consensus 710 ~Nl~~~--~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~---------------~~tllENtAITIGr 772 (885)
T KOG2023|consen 710 ANLNPE--NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNT---------------PKTLLENTAITIGR 772 (885)
T ss_pred hcCChh--hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCc---------------hHHHHHhhhhhhhh
Confidence 766554 6677789999999999999999999999999999988764211 11222212112223
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchh
Q 002877 779 FKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTK 831 (872)
Q Consensus 779 l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 831 (872)
++..+++.+.|+++..+......++.- .+.+-+.+|+.-+..++..-+....
T Consensus 773 Lg~~~Pe~vAp~l~~f~~pWc~sl~~i-~DneEK~sAFrG~c~mi~vNp~~vv 824 (885)
T KOG2023|consen 773 LGYICPEEVAPHLDSFMRPWCTSLRNI-DDNEEKESAFRGLCNMINVNPSGVV 824 (885)
T ss_pred hhccCHHhcchhHHHHHHHHHHHhccc-ccchhHHHHHHHHHHheeeCchhhh
Confidence 444478889999999888777666543 2445567888888888877776544
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.8e-28 Score=256.57 Aligned_cols=769 Identities=14% Similarity=0.179 Sum_probs=516.7
Q ss_pred Cc-chHH-HHHHHhcCCCHHHHHHHHHHHHH-HHhc-------ChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCC
Q 002877 1 MA-MEIT-QFLLAAQSADANIRNEAEANLRQ-LQQQ-------NLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAK 70 (872)
Q Consensus 1 ~~-~~~~-~~l~~~~s~~~~~r~~A~~~L~~-~~~~-------~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~ 70 (872)
|| |+.. .+++.+.|+|.+.|-.|..-|.. +++. ..+..+..++++|.+ .+.+++.+|...+.-.+
T Consensus 1 ma~~~~~i~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D--~ngEVQnlAVKClg~lv--- 75 (1233)
T KOG1824|consen 1 MASMQVGINLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED--KNGEVQNLAVKCLGPLV--- 75 (1233)
T ss_pred CchhHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc--cCcHHHHHHHHHHHHHH---
Confidence 44 6666 89999999999999999998874 5542 235677888998876 46888888888776544
Q ss_pred cccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCC-------CCchHHHHHHHHhhccC
Q 002877 71 DATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQ-------KQWPELIRSLLNNMTQQ 143 (872)
Q Consensus 71 ~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~-------~~~~~ll~~l~~~l~~~ 143 (872)
.++.++..+.+-+.|...+.+..++.|-..+-.+.......-|. .-.+.+.+.+.+.+...
T Consensus 76 ------------sKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~q 143 (1233)
T KOG1824|consen 76 ------------SKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQ 143 (1233)
T ss_pred ------------hhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 24566777788888888877777888887777777666555442 12345566666655543
Q ss_pred CccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 002877 144 DSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIM 223 (872)
Q Consensus 144 ~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 223 (872)
+....++-.++.++..+..++ ++.+ .++...++..+...+.. +...||+.|+-+++++......+.- .+++
T Consensus 144 e~~sai~~e~lDil~d~lsr~-g~ll-~~fh~~il~~l~~ql~s--~R~aVrKkai~~l~~la~~~~~~ly-----~~li 214 (1233)
T KOG1824|consen 144 EDVSAIKCEVLDILADVLSRF-GTLL-PNFHLSILKCLLPQLQS--PRLAVRKKAITALGHLASSCNRDLY-----VELI 214 (1233)
T ss_pred ccchhhHHHHHHHHHHHHHhh-cccC-cchHHHHHHHHhhcccC--hHHHHHHHHHHHHHHHHHhcCHHHH-----HHHH
Confidence 213347777888888888888 5777 66777788888888877 6789999999999998876654322 2244
Q ss_pred HHHHHhh-cCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh---cCCChHHHHHHHHhHhHHhHhhhhhhhh
Q 002877 224 KVVCETA-KSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAV---KGDEEAVALQAVEFWSSICDEEIELQEF 299 (872)
Q Consensus 224 ~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~al~~l~~l~~~~~~~~~~ 299 (872)
..+...+ +......-...++|+.+++...+..+..|++.+++++.... +.++++.|..+++.+..+...-
T Consensus 215 ~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc------ 288 (1233)
T KOG1824|consen 215 EHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC------ 288 (1233)
T ss_pred HHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC------
Confidence 4444444 34556666788999999999999999999998888777665 5678899999998888887652
Q ss_pred cCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhccc-------CC-----------c-------ccCCCCcchhhhHHHHH
Q 002877 300 ENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQE-------ED-----------Q-------DQDDSIWNISMAGGTCL 354 (872)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~-------~d-----------~-------~~d~~~~~~r~~a~~~l 354 (872)
+.-+.++.+.++..+++.+++++ || + ||||.+|.+|++|++|+
T Consensus 289 ------------p~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl 356 (1233)
T KOG1824|consen 289 ------------PKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCL 356 (1233)
T ss_pred ------------hhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHH
Confidence 22346677889999998887532 11 0 12336899999999999
Q ss_pred HHHHhhcCCc-------chhchH---------------------------------------------------------
Q 002877 355 GLVARTVGDE-------VVPLVM--------------------------------------------------------- 370 (872)
Q Consensus 355 ~~l~~~~~~~-------~~~~l~--------------------------------------------------------- 370 (872)
..+...-.+. +-|.++
T Consensus 357 ~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~i 436 (1233)
T KOG1824|consen 357 EAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLI 436 (1233)
T ss_pred HHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHH
Confidence 9887542211 111111
Q ss_pred -HHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcH--HHHHHHHHHHHHHHhhccCCCCC
Q 002877 371 -PFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENN--HVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 371 -~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
..+...+++..-+.|.++...|..++... |+...++++.++|.+...|.|.+. ..+..++..+.......+.
T Consensus 437 Vkai~~qlr~ks~kt~~~cf~lL~eli~~l-p~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p---- 511 (1233)
T KOG1824|consen 437 VKAIQKQLREKSVKTRQGCFLLLTELINVL-PGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPP---- 511 (1233)
T ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHhC-cchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCCh----
Confidence 11111111122223334444444444444 466777888999999999987653 3444454444433332222
Q ss_pred ccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCC-CCCCchhhHHHHHHHHHHhhccCCCcchhHHH
Q 002877 448 FSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGP-SSSLLSPYLTSIIAELLRAADRTDVGGSKLRS 525 (872)
Q Consensus 448 ~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~-~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~ 525 (872)
....++++.+.+.+..+..| -+++...|......+++..++..+ ..-...||+..++...++.+...| .+.+||.
T Consensus 512 --~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d-~DqeVke 588 (1233)
T KOG1824|consen 512 --EVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATD-SDQEVKE 588 (1233)
T ss_pred --hhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccc-ccHHHHH
Confidence 24567888888888888888 788988888888899988763222 134467899999999999987655 4567899
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchh
Q 002877 526 AAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQ 605 (872)
Q Consensus 526 ~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 605 (872)
.|+.|++.++...+ +.....++..+|.+++++.+-+ .|-.+..++..++.+--.= ...|
T Consensus 589 raIscmgq~i~~fg-D~l~~eL~~~L~il~eRl~nEi---------------TRl~AvkAlt~Ia~S~l~i-----~l~~ 647 (1233)
T KOG1824|consen 589 RAISCMGQIIANFG-DFLGNELPRTLPILLERLGNEI---------------TRLTAVKALTLIAMSPLDI-----DLSP 647 (1233)
T ss_pred HHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhchh---------------HHHHHHHHHHHHHhcccee-----ehhh
Confidence 99999999999988 6666677777777777776532 3445566666665443221 4456
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
.+..+++.+...+.......|...+.++..++.+.+..+..++ +.++..+...+.. .+.++.+.|+.++..++...+.
T Consensus 648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise-sdlhvt~~a~~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE-SDLHVTQLAVAFLTTLAIIQPS 726 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHhcccH
Confidence 6778888888888777777888889999999888876665543 3444444444433 4567889999999999888777
Q ss_pred CccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHH
Q 002877 685 KVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQL 764 (872)
Q Consensus 685 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~ 764 (872)
.+....+.+++.++..++++...-..-..++.++..+...-.+.+. |.. ++..++...... -...+
T Consensus 727 ~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~-y~~-----l~s~lt~PV~~~--------~~~~l 792 (1233)
T KOG1824|consen 727 SLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLD-YIS-----LLSLLTAPVYEQ--------VTDGL 792 (1233)
T ss_pred HHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCcc-HHH-----HHHHHcCCcccc--------cccch
Confidence 6777778899999999998755444444444444444433333332 222 222222211000 00123
Q ss_pred HHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHH
Q 002877 765 RSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFM 844 (872)
Q Consensus 765 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll 844 (872)
..++...+...+.++...+++.-.+....+..-+ ..+.+++.++-.|+-.+|++....+... +.-++..+
T Consensus 793 ~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~----~s~~s~~~ikvfa~LslGElgr~~~~s~------~~e~~~~i 862 (1233)
T KOG1824|consen 793 HKQAYYSIAKCVAALTCACPQKSKSLATKLIQDL----QSPKSSDSIKVFALLSLGELGRRKDLSP------QNELKDTI 862 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH----hCCCCchhHHHHHHhhhhhhccCCCCCc------chhhHHHH
Confidence 3444444444444444333333333344333333 2345789999999999999988777642 22366677
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHH
Q 002877 845 SECLRSDDEQLKETAGWTQGMIN 867 (872)
Q Consensus 845 ~~~~~~~~~~~~~~a~~~~~~~~ 867 (872)
-++++++.++++.+|+||+|.++
T Consensus 863 ieaf~sp~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 863 IEAFNSPSEDVKSAASYALGSLA 885 (1233)
T ss_pred HHHcCCChHHHHHHHHHHhhhhh
Confidence 77899999999999999999886
No 9
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-29 Score=258.09 Aligned_cols=676 Identities=16% Similarity=0.219 Sum_probs=440.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhh
Q 002877 4 EITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWL 83 (872)
Q Consensus 4 ~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~ 83 (872)
.+...|+++++||+++|+.||+.|+++..| ++|...+++++.+++.++++|..|++.+||.++++|....+. -.
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~----~~ 79 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS----PI 79 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC----cc
Confidence 588999999999999999999999999998 999999999999988899999999999999999999865432 24
Q ss_pred cCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhc
Q 002877 84 AIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEE 163 (872)
Q Consensus 84 ~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 163 (872)
.+.++.++.||..++..+.+....+..+++++++.|+++++|. .||++++.+...+++. +-....+.+.+-..++++
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~-kWptLl~dL~~~ls~~--D~~~~~gVL~tahsiFkr 156 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPD-KWPTLLPDLVARLSSG--DFNVINGVLVTAHSIFKR 156 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccch-hhHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHh
Confidence 6889999999999999999888999999999999999999995 9999999999999988 777777888888889888
Q ss_pred cCccc----c--c-hhh-------HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH----------------HHHHhhh
Q 002877 164 ISHQD----L--V-QDE-------VNAVLTAVVQGMNLAEHSAEVRLAATRALYNAL----------------DFALTNF 213 (872)
Q Consensus 164 ~~~~~----l--~-~~~-------~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~----------------~~~~~~~ 213 (872)
+.++. + + ... +-.++......++..+.+.. +++.+...+ +++.+++
T Consensus 157 ~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~----~l~~lf~vlll~~klfysLn~QDiPEFFEdnm 232 (960)
T KOG1992|consen 157 YRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAA----ALNILFGVLLLICKLFYSLNFQDIPEFFEDNM 232 (960)
T ss_pred cCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchh----HHHHHHHHHHHHHHHHHhhhcccchHHHHhhH
Confidence 76321 1 0 111 12233333333322222322 333333321 2333333
Q ss_pred hhhhHHHHHHHHHHHhhc-------CC------cHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC-----CC
Q 002877 214 QNEMERNYIMKVVCETAK-------SK------EVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG-----DE 275 (872)
Q Consensus 214 ~~~~~~~~ll~~l~~~~~-------~~------~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 275 (872)
.. .+..+.+.+. ++ -.++|..+|+.+.-.+.+|.+.+.+++++++..++..+.+ ..
T Consensus 233 ~~------wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~ky 306 (960)
T KOG1992|consen 233 KT------WMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKY 306 (960)
T ss_pred HH------HHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccH
Confidence 33 3344444332 11 1367889999999999999999999999887666555433 24
Q ss_pred hHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHh-hHHHHHHHHhcccCCcc--cC------------
Q 002877 276 EAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSS-LVPMLLETLLKQEEDQD--QD------------ 340 (872)
Q Consensus 276 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~~~l~~~~~d~~--~d------------ 340 (872)
+.+...|++|+..+++........ . ..++++...+. ++|.+ .-.++|++ ||
T Consensus 307 D~Lvs~Al~FLt~V~~r~~y~~~F--~--------~~~vl~~i~e~VvlpN~----~lR~eDeElFED~pleYiRRDlEG 372 (960)
T KOG1992|consen 307 DYLVSKALQFLTSVSRRPHYAELF--E--------GENVLAQICEKVVLPNL----ILREEDEELFEDNPLEYIRRDLEG 372 (960)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhh--c--------chHHHHHHHHhhccccc----ccchhhHHHhccCHHHHHHHhccc
Confidence 567788999999999864421100 0 01223333332 22222 11222221 11
Q ss_pred CCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhcc------CCCcchHHHHHHHHHHhhcCCC--------------
Q 002877 341 DSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIV------KSDWRCREAATYAFGSVLEGPT-------------- 400 (872)
Q Consensus 341 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~~~-------------- 400 (872)
-+..+-|++|.+.++.++..+...+.+.+-..+...+. +.+|+.++.++..+.+++....
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence 13346689999999999999977777776666665555 4589999999988888764210
Q ss_pred ------------------------------------ccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC-
Q 002877 401 ------------------------------------IDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC- 443 (872)
Q Consensus 401 ------------------------------------~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~- 443 (872)
..--++++-.++|.+...|+.+...|-..|+.++.++.....+
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~ 532 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS 532 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Confidence 0011234557778888888888888999999999887654443
Q ss_pred C--CCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccC--CC
Q 002877 444 P--ATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRT--DV 518 (872)
Q Consensus 444 ~--~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~--~~ 518 (872)
. .|+ +....++...++..+++.+.- ...--+-...++.++.... ++.+.|+.+.++..+.+.+... ..
T Consensus 533 ~~~if~-~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~------~~~i~p~~~~~l~~Lteiv~~v~KNP 605 (960)
T KOG1992|consen 533 NAKIFG-AEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL------QSAIIPHAPELLRQLTEIVEEVSKNP 605 (960)
T ss_pred cccccc-hhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC------HHhhhhhhhHHHHHHHHHHHHHhcCC
Confidence 1 111 123345566666677766542 1111122334455555443 5556677777777776655321 11
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcc----cHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcC
Q 002877 519 GGSKLRSAAYETLNEVVRCSNITE----TSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFS 594 (872)
Q Consensus 519 ~~~~vr~~a~~al~~l~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 594 (872)
.++..-+..+++++.+++..+ .. ...+...++|.+-..+.+- ..+..-++...++.++...+
T Consensus 606 s~P~fnHYLFEsi~~li~~t~-~~~~~~vs~~e~aL~p~fq~Il~eD-------------I~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 606 SNPQFNHYLFESIGLLIRKTC-KANPSAVSSLEEALFPVFQTILSED-------------IQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred CCchhHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhcC
Confidence 234457899999999998765 32 3556667777777777643 34556677788888877665
Q ss_pred CCccchhhchhhHHHHHHHHHH-HHccCChhHHHHHHHHHHHHHHHhhhHHH--hhhHHHHHHHHhhhcccchHhHHHHH
Q 002877 595 STDATKSFILQTADQIMVLFLR-VFACRSSTVHEEAMLAIGALAYATGPEFA--KYMPEFYQYLQMGLQNSEEYQVCAIT 671 (872)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~~~~~~~v~~~a 671 (872)
. .+.+...++++.++. .+.+....+ -+....+.++.+.....+. ..++.++..+.+.+.+.. .-..+
T Consensus 672 ~------~ip~~~~~l~~~lLsp~lW~r~gNi-palvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka---~Dh~G 741 (960)
T KOG1992|consen 672 G------TIPDSYSPLFPPLLSPNLWKRSGNI-PALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKA---NDHHG 741 (960)
T ss_pred C------CCchhHHHHHHHhcCHHHHhhcCCc-HHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcc---cchhH
Confidence 5 343333333333321 222222222 1234455555555444444 456667766666555432 12456
Q ss_pred HHHHHHHHHHhc-CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHH
Q 002877 672 VGVVGDVCRALD-DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG-VHFEKYVPHALQMMQEAA 744 (872)
Q Consensus 672 ~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~~ 744 (872)
..++..+...++ ....||+.+|...+++.++++...+-+|. ...+++..+...| ..+.+.++.+-|.++..+
T Consensus 742 F~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~-~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l 815 (960)
T KOG1992|consen 742 FYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKS-FIVFFSLFTIKKGGLMLAEVIDGIQPGMFGML 815 (960)
T ss_pred HHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHHHHhhhHHHHHHHhhcchhHHHHH
Confidence 778888887775 45789999999999999998754444443 3455555555543 445566666666666543
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-28 Score=251.28 Aligned_cols=658 Identities=14% Similarity=0.180 Sum_probs=459.3
Q ss_pred CChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCC--ChhHhhHHHHHHHHHHH-hh----
Q 002877 51 KPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASP--VPEARHTSAQVIAKIAS-IE---- 123 (872)
Q Consensus 51 ~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~--~~~vr~~~~~~l~~i~~-~~---- 123 (872)
++.++|..|-..|++.-. +........|-+.|.+. +...|..++-.+..-.. .+
T Consensus 13 pD~n~~~~Ae~~l~~~~~-------------------~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k 73 (859)
T KOG1241|consen 13 PDQNVRKRAEKQLEQAQS-------------------QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERK 73 (859)
T ss_pred CCcchHHHHHHHHHHHHh-------------------ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHH
Confidence 568888888887776542 22233444556666653 46677777777764332 11
Q ss_pred --cCCCCch--------HHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHH
Q 002877 124 --IPQKQWP--------ELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAE 193 (872)
Q Consensus 124 --~p~~~~~--------~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~ 193 (872)
+. +.|. .+-..++..+.++ .+.....|..+++.+...--| ...++.+++.+..-..+. ++..
T Consensus 74 ~~~~-qRWl~l~~e~reqVK~~il~tL~~~--ep~~~s~Aaq~va~IA~~ElP----~n~wp~li~~lv~nv~~~-~~~~ 145 (859)
T KOG1241|consen 74 QQYQ-QRWLQLPAEIREQVKNNILRTLGSP--EPRRPSSAAQCVAAIACIELP----QNQWPELIVTLVSNVGEE-QASM 145 (859)
T ss_pred HHHH-HHHHcCCHHHHHHHHHHHHHHcCCC--CCCccchHHHHHHHHHHhhCc----hhhCHHHHHHHHHhcccc-cchH
Confidence 11 2562 2444556666666 677778888899888764213 667888888888877775 3448
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHhhhhhhHHhHH--HHHHHHHH
Q 002877 194 VRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK--SKEVEIRQAAFECLVSIASTYYEVLEPYMQ--TLFELTSN 269 (872)
Q Consensus 194 vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~ 269 (872)
+|.+++.+++.+.+.+....-. ...+.++..+.+... .++..+|.++..+|..-++.-...|..-.+ -+++....
T Consensus 146 ~k~~slealGyice~i~pevl~-~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 146 VKESSLEALGYICEDIDPEVLE-QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHccCCHHHHH-HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 9999999999876654443111 112346666666664 457789999999988776655544443333 25555566
Q ss_pred HhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHh-hHHHHHHHHhcccCCcc-cCCCCcc-h
Q 002877 270 AVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSS-LVPMLLETLLKQEEDQD-QDDSIWN-I 346 (872)
Q Consensus 270 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~~~l~~~~~d~~-~d~~~~~-~ 346 (872)
..+.++.+++..|++++..+..... .|+++|..+ +++.-+..|..+++.-. ..-+.|+ +
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY------------------~~m~~yM~~alfaitl~amks~~deValQaiEFWsti 286 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYY------------------EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI 286 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778999999999999999887533 366666665 77777777653221000 0002243 3
Q ss_pred hhhHHHHHHHHHhhc----C-------CcchhchHHHHHhhcc-------CCCcchHHHHHHHHHHhhcCCCccchhHhH
Q 002877 347 SMAGGTCLGLVARTV----G-------DEVVPLVMPFVEANIV-------KSDWRCREAATYAFGSVLEGPTIDKLAPLV 408 (872)
Q Consensus 347 r~~a~~~l~~l~~~~----~-------~~~~~~l~~~l~~~l~-------~~~~~~r~aal~~l~~i~~~~~~~~~~~~l 408 (872)
+.--.+......+.. + ...++.+.|.+.+.+. +++|....+|-.||.-++..++ +.+ +
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~-D~I---v 362 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG-DDI---V 362 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc-ccc---h
Confidence 322222222222211 1 1112245555554443 2459999999999999999887 544 4
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 409 HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 409 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
+.++|++-+.++.++++-|.+|..++|.+.+.-.. ....++.++.++.++..+.| .-.|+..+.|+|+++++.
T Consensus 363 ~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~------~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 363 PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP------DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch------hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 47899999999999999999999999998765443 34567788888999988888 777889999999999998
Q ss_pred hccCCCCCCCc--hhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhh
Q 002877 488 YEDAGPSSSLL--SPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ 565 (872)
Q Consensus 488 ~~~~~~~~~~l--~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 565 (872)
+ +... ..+.+.+++.++..++ | ++.+-..+.+++..+++.+. +-
T Consensus 437 l------~e~~~n~~~l~~~l~~l~~gL~--D--ePrva~N~CWAf~~Laea~~-eA----------------------- 482 (859)
T KOG1241|consen 437 L------PEAIINQELLQSKLSALLEGLN--D--EPRVASNVCWAFISLAEAAY-EA----------------------- 482 (859)
T ss_pred c------hhhcccHhhhhHHHHHHHHHhh--h--CchHHHHHHHHHHHHHHHHH-Hh-----------------------
Confidence 7 3332 3467778888888776 3 34445566666666665544 10
Q ss_pred hcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC---ChhHHHHHHHHHHHHHHHhhh
Q 002877 566 IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR---SSTVHEEAMLAIGALAYATGP 642 (872)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~ 642 (872)
.... .......|+++.+++.|+..-+.. +...|..++.+|+.+++.+++
T Consensus 483 ---------------------------~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 483 ---------------------------AVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred ---------------------------ccCC-CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 0000 000134478889999999888764 678999999999999999988
Q ss_pred HHHhhhHHHHHHHHhhhcc--------cc----hHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCC
Q 002877 643 EFAKYMPEFYQYLQMGLQN--------SE----EYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSV 710 (872)
Q Consensus 643 ~~~~~l~~i~~~l~~~l~~--------~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 710 (872)
...+.+..+.+.+...|.+ .+ -.++....|.+|+.+.+..+..+.++.+++|..++++++++. ..-+
T Consensus 535 ~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~-s~~v 613 (859)
T KOG1241|consen 535 DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKR-SAVV 613 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCc-cccc
Confidence 7777666666655543322 11 135778899999999999999999999999999999999843 5668
Q ss_pred chhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhh
Q 002877 711 KPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPY 790 (872)
Q Consensus 711 ~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 790 (872)
.+.++.+++.++..+|..|.+|++.+.|.+...+++. ...+++.+-.|++..+.+...+.+.||
T Consensus 614 ~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~----------------~e~qVc~~aVglVgdl~raL~~~i~py 677 (859)
T KOG1241|consen 614 HEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNF----------------QEYQVCAAAVGLVGDLARALEDDILPY 677 (859)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcc----------------hHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 8899999999999999999999999999999987642 223456666677777776667789999
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHH
Q 002877 791 AQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSE 846 (872)
Q Consensus 791 ~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~ 846 (872)
.+.++..|.++++++..+++++-.+++++|||..++|..+. .|... |-.+++.
T Consensus 678 ~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~--~Yl~~-vm~llq~ 730 (859)
T KOG1241|consen 678 CDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFE--PYLEM-VMPLLQQ 730 (859)
T ss_pred HHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHH--HHHHH-HHHHHHH
Confidence 99999999999998889999999999999999999999855 34443 4444444
No 11
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=6.9e-27 Score=244.80 Aligned_cols=675 Identities=18% Similarity=0.223 Sum_probs=450.2
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
|.|.+.|.+.+|+|+.+|.+||..|+++..+ ++|-..|..+..+...+.+.|+.|.+.||+.+...|.+..+.....
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~--~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~- 80 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELT--EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP- 80 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccc--hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC-
Confidence 5689999999999999999999999999998 8999999999999877899999999999999999998876554332
Q ss_pred hcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhh
Q 002877 83 LAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCE 162 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 162 (872)
...+.+.+..||+.|++.+.+++..+|+.++.+++.|+..+||+ .||++++.+...+++. +....++|+.++..+..
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~--n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSG--NENSIHGAMRVLAELSD 157 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhcc--chhhhhhHHHHHHHHHH
Confidence 22678999999999999999999999999999999999999995 9999999999999987 88889999999999888
Q ss_pred ccCccccchhhHHHHHHHHHhcccCC-CCCHHHHH--HHHHHHHHHHHHHHhhhhhhhH--HHH-------HHHHHHHhh
Q 002877 163 EISHQDLVQDEVNAVLTAVVQGMNLA-EHSAEVRL--AATRALYNALDFALTNFQNEME--RNY-------IMKVVCETA 230 (872)
Q Consensus 163 ~~~~~~l~~~~~~~l~~~l~~~l~~~-~~~~~vr~--~al~~l~~~~~~~~~~~~~~~~--~~~-------ll~~l~~~~ 230 (872)
++..+.+ ....+..++.+.....-. ..+...|. +.++.+.++...+...-..+.. +.+ +++.+-+.+
T Consensus 158 ev~~ee~-~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l 236 (1005)
T KOG2274|consen 158 EVDVEEM-FFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPL 236 (1005)
T ss_pred HHHHHHH-hcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7631111 111112222222211110 02333333 3346666666554432222211 111 122222222
Q ss_pred c---CCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh----------------------cCCC------hHHH
Q 002877 231 K---SKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAV----------------------KGDE------EAVA 279 (872)
Q Consensus 231 ~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~----------------------~~~~------~~~~ 279 (872)
+ -.+...+...+.++..+.+..|..+.+++..+++...... .+.+ +...
T Consensus 237 ~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~ 316 (1005)
T KOG2274|consen 237 QRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLV 316 (1005)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhh
Confidence 2 2345678899999999999999988888776544332211 0111 2245
Q ss_pred HHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcc-------cCCc----ccCCCCcchhh
Q 002877 280 LQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQ-------EEDQ----DQDDSIWNISM 348 (872)
Q Consensus 280 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~-------~~d~----~~d~~~~~~r~ 348 (872)
...++|++.++....- .+-++..++.+++.+...++-. ..|. +++++.+..|.
T Consensus 317 i~i~eF~s~i~t~~~~----------------~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~ 380 (1005)
T KOG2274|consen 317 IQIVEFLSTIVTNRFL----------------SKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARI 380 (1005)
T ss_pred hhHHHHHHHHHHHHHH----------------HHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhh
Confidence 6788899998876331 1112223333444333222211 1111 11122267888
Q ss_pred hHHHHHHHHHhhcCCcchhchHHHHHhhc---------cCC-CcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh
Q 002877 349 AGGTCLGLVARTVGDEVVPLVMPFVEANI---------VKS-DWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA 418 (872)
Q Consensus 349 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l---------~~~-~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~ 418 (872)
.+.+.+-.+...+|...+..+.......+ +.+ .|+..++.+.+......+ +.....+..++..+...
T Consensus 381 ~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~---~~~dd~l~~l~~~~~~~ 457 (1005)
T KOG2274|consen 381 SVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID---DANDDKLIELTIMIDNG 457 (1005)
T ss_pred hHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC---cchHHHHHHHHHHHHhh
Confidence 88888888888888666555554432222 223 477777777777776643 22333444555555555
Q ss_pred c-CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh-c-ChHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 419 M-RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK-D-APNVAEKVCGAIYYLAQGYEDAGPSS 495 (872)
Q Consensus 419 l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~ 495 (872)
+ ....|..-.++.|+++.+++.... ..+.+..++...+..+. + .+.++.+|+.++...|+ .
T Consensus 458 l~~~e~P~Ll~Ra~~~i~~fs~~~~~--------~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--------~ 521 (1005)
T KOG2274|consen 458 LVYQESPFLLLRAFLTISKFSSSTVI--------NPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--------V 521 (1005)
T ss_pred cccccCHHHHHHHHHHHHHHHhhhcc--------chhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--------c
Confidence 5 456777777999999998876542 44566677777776665 3 77888899998888872 6
Q ss_pred CCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhH
Q 002877 496 SLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQ 575 (872)
Q Consensus 496 ~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 575 (872)
..+.++.+.|+..+.+.....+ ..+.....++|+.+++..+ +.....-..+.|.++..+.+. .+|+...
T Consensus 522 ~vl~~~~p~ild~L~qlas~~s---~evl~llmE~Ls~vv~~dp-ef~as~~skI~P~~i~lF~k~-------s~DP~V~ 590 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLASKSS---DEVLVLLMEALSSVVKLDP-EFAASMESKICPLTINLFLKY-------SEDPQVA 590 (1005)
T ss_pred eeccccchHHHHHHHHHccccc---HHHHHHHHHHHHHHhccCh-hhhhhhhcchhHHHHHHHHHh-------cCCchHH
Confidence 7788999999999999886433 4567888999999999888 555555567888888888764 2333211
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCC----hhHHHHHHHHHHHHHHHhhhHHHh-hhHH
Q 002877 576 GDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRS----STVHEEAMLAIGALAYATGPEFAK-YMPE 650 (872)
Q Consensus 576 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~----~~v~~~a~~~l~~l~~~~~~~~~~-~l~~ 650 (872)
...+...-+.++ ... ...|+...+++.++..+..+. ...-..++..+..+.+..+..+.+ .+..
T Consensus 591 ~~~qd~f~el~q-~~~----------~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~ 659 (1005)
T KOG2274|consen 591 SLAQDLFEELLQ-IAA----------NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY 659 (1005)
T ss_pred HHHHHHHHHHHH-HHH----------hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 112222222222 222 344577788888888888774 556667788888888877765443 5567
Q ss_pred HHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCC-----cccc--HHHHHHHHHHHhcCCCCCCCCchhHHHHHHHH--
Q 002877 651 FYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDK-----VLPF--CDGIMSLLLNALSNSQLNRSVKPPILSCFGDI-- 721 (872)
Q Consensus 651 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-----~~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l-- 721 (872)
.+|.+.++.-.+++.++...+-+|+..++....++ ..|- +-.||..+-++|+ +..-..++...|.+
T Consensus 660 ~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd-----p~~sds~a~~VG~lV~ 734 (1005)
T KOG2274|consen 660 AFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD-----PETSDSAAAFVGPLVL 734 (1005)
T ss_pred HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC-----CccchhHHHHHhHHHH
Confidence 88999888877778889999999999888764321 2222 2256666666553 22334444455555
Q ss_pred --HHhhccchhhhHHHHHHHHHHHHHh
Q 002877 722 --ALAIGVHFEKYVPHALQMMQEAAKA 746 (872)
Q Consensus 722 --~~~~~~~~~~~l~~i~~~l~~~~~~ 746 (872)
..+.|..+.+-++.++..++..++.
T Consensus 735 tLit~a~~el~~n~d~IL~Avisrmq~ 761 (1005)
T KOG2274|consen 735 TLITHASSELGPNLDQILRAVISRLQQ 761 (1005)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 4455777777788888888777664
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.97 E-value=1.5e-24 Score=227.51 Aligned_cols=787 Identities=16% Similarity=0.188 Sum_probs=508.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CCChhHHHHHHHHHhhcccCCccc-----ch----
Q 002877 7 QFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNN--EKPTESRRLAGIMLKNSLDAKDAT-----TK---- 75 (872)
Q Consensus 7 ~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~--~~~~~vr~~a~~~l~~~i~~~~~~-----~~---- 75 (872)
-+|+.+-+.|.++++.|-+.|.=+.+.-++.-+..+.+-|... +.-.+.|-.+++-||..+..-... ..
T Consensus 51 ~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~ 130 (1233)
T KOG1824|consen 51 MLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCK 130 (1233)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHH
Confidence 3455556669999999999998555443333333333322221 123556666666665543211100 00
Q ss_pred ---------------------------HHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCC
Q 002877 76 ---------------------------EDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQ 128 (872)
Q Consensus 76 ---------------------------~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~ 128 (872)
...-.++..+-++....+...++..+..+-..||+.++.+++.++..- +..-
T Consensus 131 ~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~l 209 (1233)
T KOG1824|consen 131 RITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDL 209 (1233)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHH
Confidence 001122333334455555556666666677889999999999999775 4457
Q ss_pred chHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccC-CCCCHHHHHHHHHHHHHHHH
Q 002877 129 WPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNL-AEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 129 ~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~-~~~~~~vr~~al~~l~~~~~ 207 (872)
+.+++..+...+..+. +....+..+.+++.++... +.-+ ..|++.++|.+.+..+. ++.+.++|...++++..++.
T Consensus 210 y~~li~~Ll~~L~~~~-q~~~~rt~Iq~l~~i~r~a-g~r~-~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 210 YVELIEHLLKGLSNRT-QMSATRTYIQCLAAICRQA-GHRF-GSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHHHHHHhccCCCC-chHHHHHHHHHHHHHHHHh-cchh-hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 8889999998887653 5667778999999999987 4455 67899999999988843 23578999999999999987
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhh-------------------------------c---CCcHHHHHHHHHHHHHHHHhhh
Q 002877 208 FALTNFQNEMERNYIMKVVCETA-------------------------------K---SKEVEIRQAAFECLVSIASTYY 253 (872)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~l~~~~-------------------------------~---~~~~~~~~~~~~~l~~l~~~~~ 253 (872)
+.+.++... .+.+++.+.+.+ . |-.+.+|++|.+|+..++....
T Consensus 287 rcp~ei~p~--~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~ 364 (1233)
T KOG1824|consen 287 RCPKEILPH--VPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL 364 (1233)
T ss_pred hChhhhccc--chHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH
Confidence 655443221 111222222110 0 1135799999999999999999
Q ss_pred hhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCC---CCCCCchHHHHHhHHhhHHHHHHHH
Q 002877 254 EVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETG---DSDSPNYHFIEKARSSLVPMLLETL 330 (872)
Q Consensus 254 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~l 330 (872)
+.+..+.+.+-+.++..+++.+++++...+..+..+..+-+........++. +.......+++...+.++..+-..+
T Consensus 365 E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ql 444 (1233)
T KOG1824|consen 365 EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQL 444 (1233)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHH
Confidence 9998888899999999999999999999998777776653322211111110 0011112344444444444444444
Q ss_pred hcccCCcccCCCCcchhhhHHHHHHHHHhhcCC---cchhchHHHHHhhccCCC--cchHHHHHHHHHHhhcCCCccchh
Q 002877 331 LKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD---EVVPLVMPFVEANIVKSD--WRCREAATYAFGSVLEGPTIDKLA 405 (872)
Q Consensus 331 ~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~--~~~r~aal~~l~~i~~~~~~~~~~ 405 (872)
.+ .+-..|..+...|..+....|. +.++.++|-+...++|.+ ...+..++..+......+.++.+.
T Consensus 445 r~---------ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh 515 (1233)
T KOG1824|consen 445 RE---------KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH 515 (1233)
T ss_pred hh---------ccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc
Confidence 31 2245678888889999888874 445667888888877643 445666666666655555578999
Q ss_pred HhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh--c-ChHHHHHHHHHHH
Q 002877 406 PLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK--D-APNVAEKVCGAIY 482 (872)
Q Consensus 406 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--d-~~~v~~~a~~al~ 482 (872)
|+++.+.|.+..+..|+-+.+-..|+....++.+.+.....+......+++.+++...++.+. | +..||++|..+++
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988763321123567899999999998886 4 8999999999999
Q ss_pred HHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHH
Q 002877 483 YLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTL 562 (872)
Q Consensus 483 ~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 562 (872)
.+.-.+ ++.+...++.+++.+.+.+++ +.. |..|+.|+..++.+.-.-+..+.+.++++.+.+.+.+..
T Consensus 596 q~i~~f------gD~l~~eL~~~L~il~eRl~n---EiT--Rl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~ 664 (1233)
T KOG1824|consen 596 QIIANF------GDFLGNELPRTLPILLERLGN---EIT--RLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ 664 (1233)
T ss_pred HHHHHH------hhhhhhhhHHHHHHHHHHHhc---hhH--HHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH
Confidence 999998 888889999999999999973 223 999999999888764313457888888888888887642
Q ss_pred hhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhh-HHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh
Q 002877 563 ELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQT-ADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG 641 (872)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 641 (872)
-.++...+.++..+++.++. .+.++ ++.++.-+..++..++-.+-+.|+.++..++...+
T Consensus 665 -------------r~lr~~~l~a~~~L~~~~~~------~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 665 -------------RALRLATLTALDKLVKNYSD------SIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred -------------HHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 23556677888888888877 56555 45666777777777777888888888888877665
Q ss_pred hHHHhhhHHHHHHHHhhhccc----------------------ch--H---------------------hHHHHHHHHHH
Q 002877 642 PEFAKYMPEFYQYLQMGLQNS----------------------EE--Y---------------------QVCAITVGVVG 676 (872)
Q Consensus 642 ~~~~~~l~~i~~~l~~~l~~~----------------------~~--~---------------------~v~~~a~~~l~ 676 (872)
.......+.+++.+...+++. .+ . +.-.+...|.+
T Consensus 726 s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA 805 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVA 805 (1233)
T ss_pred HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHH
Confidence 544444444444444333221 00 0 00000111222
Q ss_pred HHHHHhcCCc------------------------------------cccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHH
Q 002877 677 DVCRALDDKV------------------------------------LPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGD 720 (872)
Q Consensus 677 ~l~~~~~~~~------------------------------------~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~ 720 (872)
.+....++.- ..+.+.+-..++..++++ +.++|.+|..|+|.
T Consensus 806 ~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp--~edvksAAs~ALGs 883 (1233)
T KOG1824|consen 806 ALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSP--SEDVKSAASYALGS 883 (1233)
T ss_pred HHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCC--hHHHHHHHHHHhhh
Confidence 2222221000 011223334556666666 67788888888887
Q ss_pred HHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHH
Q 002877 721 IALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIEL 800 (872)
Q Consensus 721 l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~ 800 (872)
++.. ....|+|.++..+...-. -+.-.+..+..++.. ...+.+.|+++.|+..+.+
T Consensus 884 l~vg---nl~~yLpfil~qi~sqpk------------------~QyLLLhSlkevi~~---~svd~~~~~v~~IW~lL~k 939 (1233)
T KOG1824|consen 884 LAVG---NLPKYLPFILEQIESQPK------------------RQYLLLHSLKEVIVS---ASVDGLKPYVEKIWALLFK 939 (1233)
T ss_pred hhcC---chHhHHHHHHHHHhcchH------------------hHHHHHHHHHHHHHH---hccchhhhhHHHHHHHHHH
Confidence 7652 233344444333332211 011112222222222 2334578999999999998
Q ss_pred HhcCCCCCHhHHHHHHHHHHHHHhhhCcchhh--------------------------------hccCchHHHHHHHHHh
Q 002877 801 IFKDNHRDENVTKAAVAVMGDLADALGPNTKL--------------------------------LFKDSSFCNDFMSECL 848 (872)
Q Consensus 801 ~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--------------------------------~~~~~~~v~~ll~~~~ 848 (872)
.+.. ..+..|.....|+|.++-.-+....+ +.+..+.+..+++. +
T Consensus 940 ~cE~--~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~-~ 1016 (1233)
T KOG1824|consen 940 HCEC--AEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKL-L 1016 (1233)
T ss_pred hccc--chhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHH-H
Confidence 8765 56888999999999987654432110 01112234455554 7
Q ss_pred cCCcHHHHHHHHHHHHHHH
Q 002877 849 RSDDEQLKETAGWTQGMIN 867 (872)
Q Consensus 849 ~~~~~~~~~~a~~~~~~~~ 867 (872)
.|+|.+||..|--++-..+
T Consensus 1017 ~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred hCCchhHHHHHHHHHHHHH
Confidence 8999999998887765543
No 13
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-24 Score=223.20 Aligned_cols=738 Identities=12% Similarity=0.129 Sum_probs=453.0
Q ss_pred CcchHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHH
Q 002877 1 MAMEITQFLLAAQSA--DANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDL 78 (872)
Q Consensus 1 ~~~~~~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~ 78 (872)
|+.++++++.++..| |+..|+||.+++++++.+ |..|..+.+++.+.+.++.+|..+.+.|...++
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsS--p~aw~Icie~l~~~ts~d~vkf~clqtL~e~vr---------- 68 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSS--PNAWEICIELLINETSNDLVKFYCLQTLIELVR---------- 68 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCC--ccHHHHHHHHHHhhcccchhhhhhHHHHHHHHH----------
Confidence 677899999999988 899999999999999999 999999999999877899999999999987764
Q ss_pred HhhhhcCChHHHHHHHHHHHHhh-----cCC----ChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHH
Q 002877 79 AKQWLAIDISYKSQVKDLLLRTL-----ASP----VPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAAL 149 (872)
Q Consensus 79 ~~~w~~l~~~~~~~i~~~Ll~~l-----~~~----~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~ 149 (872)
..+...+...++.+|..+..-+ .++ .+.++++++++++.+.-.+||. .|+.++..+...++.++ ...-
T Consensus 69 -ekyne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~-~WnsfF~dlmsv~~~~s-~~~~ 145 (980)
T KOG2021|consen 69 -EKYNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD-CWNSFFDDLMSVFQVDS-AISG 145 (980)
T ss_pred -HhhccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhccc-chhh
Confidence 2234578888899999887533 333 5789999999999999999995 89999999999887651 1111
Q ss_pred HHHHHHHHHHhhhccC-cc----------------ccchhhHHHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHHHH
Q 002877 150 KQATLETLGYVCEEIS-HQ----------------DLVQDEVNAVLTAVVQGMNLA--EHSAEVRLAATRALYNALDFAL 210 (872)
Q Consensus 150 r~~al~~l~~l~~~~~-~~----------------~l~~~~~~~l~~~l~~~l~~~--~~~~~vr~~al~~l~~~~~~~~ 210 (872)
...-+.++-.+-.++. .+ .+..+..+.++....+.+..- ..++.+-...++|.+.++.|++
T Consensus 146 ~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWId 225 (980)
T KOG2021|consen 146 LDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWID 225 (980)
T ss_pred HHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhh
Confidence 2222333332222221 01 111233556666666666532 1367889999999999999887
Q ss_pred hhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhH---------------------------------
Q 002877 211 TNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLE--------------------------------- 257 (872)
Q Consensus 211 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------------------- 257 (872)
-+.-. .++.++.+...++ -+++|.+||.|+.++++..-+-+.
T Consensus 226 InLIa---Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vs 300 (980)
T KOG2021|consen 226 INLIA---NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVS 300 (980)
T ss_pred hhhhh---chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHH
Confidence 65433 2457777777776 678899999999888875311100
Q ss_pred ------------------------------HhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCC
Q 002877 258 ------------------------------PYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDS 307 (872)
Q Consensus 258 ------------------------------~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 307 (872)
..+..+++++++.+.++.+++....+.||+.....-+... +. +
T Consensus 301 kLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~---~l--s-- 373 (980)
T KOG2021|consen 301 KLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLK---AL--S-- 373 (980)
T ss_pred HHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcc---cc--c--
Confidence 0011233344444555556666666666666544322110 00 0
Q ss_pred CCCchHHHHHhHHhhHHHHHHHHhccc-----CC-cc-cCC-CCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccC
Q 002877 308 DSPNYHFIEKARSSLVPMLLETLLKQE-----ED-QD-QDD-SIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVK 379 (872)
Q Consensus 308 ~~~~~~~~~~~l~~l~~~l~~~l~~~~-----~d-~~-~d~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 379 (872)
.+ -+..+..++...++.+++++ ++ .. |+| ....+|+.....++++....|+.+...+-..+...+.+
T Consensus 374 ---~~--qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~n 448 (980)
T KOG2021|consen 374 ---SP--QKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMN 448 (980)
T ss_pred ---ch--hhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 00 11223345555555555432 22 11 222 22367888778888888777765555555555544432
Q ss_pred ---CCcchHHHHHHHHHHhhcCCCcc-------chh--HhHHhHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhccCCC
Q 002877 380 ---SDWRCREAATYAFGSVLEGPTID-------KLA--PLVHAGFDFLLNA--MRDENNHVKDTTAWTLSRIFELLHCPA 445 (872)
Q Consensus 380 ---~~~~~r~aal~~l~~i~~~~~~~-------~~~--~~l~~l~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
++|..-|.|+..+..++++.... .+. ..+....+.++.. +..+|+.|+---+..+.|+.+++..
T Consensus 449 s~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~-- 526 (980)
T KOG2021|consen 449 SKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST-- 526 (980)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--
Confidence 46999999999999998865311 111 2233444444433 3688999999999999999988875
Q ss_pred CCccccCcccHHHHHHHHHH--Hhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccC------
Q 002877 446 TGFSVISPENLQRILTVLLE--SIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRT------ 516 (872)
Q Consensus 446 ~~~~~~~~~~~~~~l~~l~~--~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~------ 516 (872)
...+++-++.+.+. ++.. +.+||.+|.+.+.++++.. ...+.||++.|++.+...+...
T Consensus 527 ------esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL------kkqlvpfie~iln~iqdlL~~~vtt~N~ 594 (980)
T KOG2021|consen 527 ------ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL------KKQLVPFIEEILNKIQDLLHIKVTTINA 594 (980)
T ss_pred ------chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCcCCCcCc
Confidence 34578888888874 5666 8999999999999999998 7888999999999998888311
Q ss_pred ---CCcchhHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHHHHHHh-hhhcCcchhhh-HHHHHHHHHHHHHHH
Q 002877 517 ---DVGGSKLRSAAYETLNEVVRCSN--ITETSQIIAELLPAIMGRLGQTLE-LQIVSSDDREK-QGDLQASLCGVLQVI 589 (872)
Q Consensus 517 ---~~~~~~vr~~a~~al~~l~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~l 589 (872)
.....+-+...+++++.++.... .+....|...++.+++....-... ....++++... ..+. .+++-+++++
T Consensus 595 ~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c-~~~lmaig~l 673 (980)
T KOG2021|consen 595 QSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAEC-HHILMAIGTL 673 (980)
T ss_pred cccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHH
Confidence 00111225678888888876432 234566777777666554332221 12222222110 0011 1222344444
Q ss_pred HHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHH
Q 002877 590 IQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCA 669 (872)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~ 669 (872)
.+++... ..+ ..+.+ ++..|...++.+++.+....+.+ .+|.
T Consensus 674 akgf~~r------lvt-------------------~~qvg----------~~~vf~~~ldvil~~ls~f~k~E---~iRs 715 (980)
T KOG2021|consen 674 AKGFHIR------LVT-------------------ENQVG----------NMVVFSNILDVILVTLSFFNKFE---NIRS 715 (980)
T ss_pred hhccccc------Ccc-------------------hhccc----------HHHHHHHHHHHHHHHHhhccccc---hhHH
Confidence 4433331 000 00000 01124445556666665544432 2777
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccc
Q 002877 670 ITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQ 749 (872)
Q Consensus 670 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~ 749 (872)
+.-.++++++...|+.+.||+++.++.++.. . +..=-...+..+.++...+..++.+++...+|.++..+-..-.
T Consensus 716 avrft~hRmI~~lg~~vlPfipklie~lL~s---~--d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~ 790 (980)
T KOG2021|consen 716 AVRFTFHRMIPILGNKVLPFIPKLIELLLSS---T--DLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIE 790 (980)
T ss_pred HHHHHHHHHHHhcchhhhcchHHHHHHHHhc---C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778888898888888899988887776552 2 1111124567777777777888888888888888876544221
Q ss_pred --cCCCchHHHHHHHHHHHHHHHHHHhHhh-ccchh-hhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhh
Q 002877 750 --LDMEDEELIDYGNQLRSSIFEAYSGILQ-GFKSA-RAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADA 825 (872)
Q Consensus 750 --~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~ 825 (872)
-.+.|....-....+|.+-+..+..+.. +++.. ..+....+.+-++..+.+. .....++-.+++...++..+...
T Consensus 791 r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~-a~~y~dpmmQksln~lcnk~v~l 869 (980)
T KOG2021|consen 791 RIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTY-APQYIDPMMQKSLNVLCNKIVCL 869 (980)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhc-cccccCHHHHHHHHHHHHHHHHh
Confidence 1112222111112344443333333331 11111 1222334444455455443 22235666666767777777766
Q ss_pred hCcc
Q 002877 826 LGPN 829 (872)
Q Consensus 826 ~~~~ 829 (872)
+|..
T Consensus 870 wggk 873 (980)
T KOG2021|consen 870 WGGK 873 (980)
T ss_pred cCCc
Confidence 6654
No 14
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-23 Score=213.58 Aligned_cols=698 Identities=14% Similarity=0.139 Sum_probs=447.6
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHh
Q 002877 1 MAMEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAK 80 (872)
Q Consensus 1 ~~~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
|.|++.+.+.++++.|+.+|+.||+.|.++.++ |||+..+++++.+...++++|..|++.+||.+.+.|++.++.-..
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKq--PgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~ 78 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQ--PGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIK 78 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcC--CcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCC
Confidence 678999999999999999999999999999999 999999999998866799999999999999999888763321000
Q ss_pred hhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHh
Q 002877 81 QWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYV 160 (872)
Q Consensus 81 ~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 160 (872)
.-..++.|+.+.++++..+..++...|...-.++..|...++|...|+ ++|.....+.++ +..+...++.|+.++
T Consensus 79 --~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~--ea~~vy~gLlcl~el 153 (970)
T COG5656 79 --ADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS--EANHVYTGLLCLEEL 153 (970)
T ss_pred --CcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc--chhHHHHHHHHHHHH
Confidence 013345666666677777677778889888889999999999977999 999999999998 788999999999999
Q ss_pred hhccCcccc-----chhhHHHHHHHHHh---cccC--CCCCHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHh
Q 002877 161 CEEISHQDL-----VQDEVNAVLTAVVQ---GMNL--AEHSAEVRLAATRALYNALDF-ALTNFQNEMERNYIMKVVCET 229 (872)
Q Consensus 161 ~~~~~~~~l-----~~~~~~~l~~~l~~---~l~~--~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~ll~~l~~~ 229 (872)
++...-+.- .......++|.+.+ .+.+ +..+.+.-.-.++.+....-+ ++..+....-....++.....
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 987531111 02233444454443 2222 223445555566655554321 111111100001122222221
Q ss_pred hc--------CCcH---------HHHHHHHHHHHHHHHhhhhhhH--------HhHHHHHHHHHHHh--------cCC--
Q 002877 230 AK--------SKEV---------EIRQAAFECLVSIASTYYEVLE--------PYMQTLFELTSNAV--------KGD-- 274 (872)
Q Consensus 230 ~~--------~~~~---------~~~~~~~~~l~~l~~~~~~~~~--------~~l~~l~~~~~~~~--------~~~-- 274 (872)
++ +-++ +.++.|+..+..+..+|.+... .....+++.++... +..
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLW 313 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLW 313 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Confidence 11 1233 4457788888888877643221 11112333333221 111
Q ss_pred ChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHH-HHHHHHhcccCCcc---cC----------
Q 002877 275 EEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVP-MLLETLLKQEEDQD---QD---------- 340 (872)
Q Consensus 275 ~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~l~~~~~d~~---~d---------- 340 (872)
-.+.....+.+....|-... ..+.+++|+++-++. +++..+.-.+++.+ .|
T Consensus 314 lsd~~LYfi~~Fve~cv~~d---------------~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~d 378 (970)
T COG5656 314 LSDIELYFIDFFVELCVDAD---------------QTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYD 378 (970)
T ss_pred cchHHHHHHHHHHHHHhhhH---------------hhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcc
Confidence 11222333333333332211 123455666654443 33444433332211 11
Q ss_pred --CCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhcc-----C---CCcchHHHHHHHHHHhhcCCC-ccchhHhHH
Q 002877 341 --DSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIV-----K---SDWRCREAATYAFGSVLEGPT-IDKLAPLVH 409 (872)
Q Consensus 341 --~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-----~---~~~~~r~aal~~l~~i~~~~~-~~~~~~~l~ 409 (872)
+...+.-.+|..++-.+...-++..+..+++++.+.+. + .+.+..++|++.++++.+-.. +......+.
T Consensus 379 f~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me 458 (970)
T COG5656 379 FFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVME 458 (970)
T ss_pred hhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHH
Confidence 12334556777777777777778878888888777763 1 246778999999999877332 122333344
Q ss_pred -hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 410 -AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 410 -~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
-+++.+...++++.-..|.+||..++++.+-.+. ....-++.+....++++ +-.|+..|+.|+..+..+
T Consensus 459 ~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd---------~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 459 YFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---------NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc---------chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 6778888899999999999999999999766654 34566778888888888 778999999999888866
Q ss_pred hccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhc
Q 002877 488 YEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIV 567 (872)
Q Consensus 488 ~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 567 (872)
-. ..+.+..+++.+|+.++...+..+ -.....++..++...+ ++..|+..+++..+.+.+-+......-
T Consensus 530 ~q----~h~k~sahVp~tmekLLsLSn~fe------iD~LS~vMe~fVe~fs-eELspfa~eLa~~Lv~qFlkiaq~l~e 598 (970)
T COG5656 530 EQ----SHEKFSAHVPETMEKLLSLSNTFE------IDPLSMVMESFVEYFS-EELSPFAPELAGSLVRQFLKIAQSLLE 598 (970)
T ss_pred hh----hhHHHHhhhhHHHHHHHHhccccc------chHHHHHHHHHHHHhH-HhhchhHHHHHHHHHHHHHHHHHHHHc
Confidence 42 256678899999999999887655 3455677788888888 888899999988888765554332221
Q ss_pred Ccchh----hhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH-HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh
Q 002877 568 SSDDR----EKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA-DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP 642 (872)
Q Consensus 568 ~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 642 (872)
...|. +...-....++.++.+++-++... + .+..++ ..+++.+--.+.+....+-..|+..+....-..+
T Consensus 599 ns~d~~s~vDDKqmaasGiL~T~~smiLSlen~---p-~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~sk- 673 (970)
T COG5656 599 NSSDTSSVVDDKQMAASGILRTIESMILSLENR---P-LVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSK- 673 (970)
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHhcccc---h-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH-
Confidence 11111 111112344556666777666553 1 233343 4677777777888777888888888877665444
Q ss_pred HHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCcc--c-cHHHHHHHHHHHhcCCCCCCCCchhHHHHHH
Q 002877 643 EFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVL--P-FCDGIMSLLLNALSNSQLNRSVKPPILSCFG 719 (872)
Q Consensus 643 ~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~--~-~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~ 719 (872)
.+.|.+..++..+.+++.+.....-...+..++..+....+..+. + |..-+.......+.+.+..-+=+..++..+.
T Consensus 674 eI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e 753 (970)
T COG5656 674 EIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIE 753 (970)
T ss_pred HhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHH
Confidence 455788888888888887755333456667778888776654443 2 4444445555666655211133456777777
Q ss_pred HHHHhhcc-chhhhHHHHHHHHHHHHH
Q 002877 720 DIALAIGV-HFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 720 ~l~~~~~~-~~~~~l~~i~~~l~~~~~ 745 (872)
.++.++++ -..+|+|.+....-..+.
T Consensus 754 ~l~Ln~rd~Ll~qy~plfi~vags~l~ 780 (970)
T COG5656 754 SLILNIRDELLSQYLPLFISVAGSGLK 780 (970)
T ss_pred HHHHHccchhHHhhhHHHHHHHhhhhh
Confidence 88888876 455788866666654443
No 15
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-25 Score=231.03 Aligned_cols=652 Identities=15% Similarity=0.178 Sum_probs=392.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhc
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLA 84 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~ 84 (872)
+.+.|++..|||..+++.||++|+++.++ |||...|..++.+.+.+.++|.+|.+.+||.+.++|+.. .. ..
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq--PGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~-----~~-~s 73 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ--PGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRN-----TK-MS 73 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC--CcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcC-----Cc-cc
Confidence 57899999999999999999999999999 999999999999988889999999999999999999742 22 47
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccC--CccHHHHHHHHHHHHHhhh
Q 002877 85 IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQ--DSLAALKQATLETLGYVCE 162 (872)
Q Consensus 85 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~--~~~~~~r~~al~~l~~l~~ 162 (872)
+++|.|..||..++..+.++++++..+.|.+++.||+.++|. .||++++.|.+.+++. .++....+..+.++..+.+
T Consensus 74 l~~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPr-eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK 152 (978)
T KOG1993|consen 74 LPPEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPR-EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK 152 (978)
T ss_pred CCHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCc-cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999995 9999999999999875 2355677788888888888
Q ss_pred ccCccccc------hhhHHHHHHHHHhcccCC------------C-----CCHHHHHHHHHHHHHHHHHHHhhhhh-hh-
Q 002877 163 EISHQDLV------QDEVNAVLTAVVQGMNLA------------E-----HSAEVRLAATRALYNALDFALTNFQN-EM- 217 (872)
Q Consensus 163 ~~~~~~l~------~~~~~~l~~~l~~~l~~~------------~-----~~~~vr~~al~~l~~~~~~~~~~~~~-~~- 217 (872)
..++.-+. ....+.+++.+...+-++ . ...++-..+++++..++.+.-.+..+ +-
T Consensus 153 ~Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~ 232 (978)
T KOG1993|consen 153 ALATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFF 232 (978)
T ss_pred HHHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHH
Confidence 76532220 222333333222222211 0 01222334555555544322111110 00
Q ss_pred HHH-HHHH--------HHHHhhcCCcHHHHHHHHHHH----HHHHHhhhhhhHH--hHHHHHHHHHHHhcCC--------
Q 002877 218 ERN-YIMK--------VVCETAKSKEVEIRQAAFECL----VSIASTYYEVLEP--YMQTLFELTSNAVKGD-------- 274 (872)
Q Consensus 218 ~~~-~ll~--------~l~~~~~~~~~~~~~~~~~~l----~~l~~~~~~~~~~--~l~~l~~~~~~~~~~~-------- 274 (872)
++. .++. .+...+++...++....|.++ ..+.+.+|-.|.. .....+++.+..+.++
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 000 0111 111111222222223333333 3344444444433 2223334443333222
Q ss_pred -----ChHHHHHHHHhHhHHhHhhhh---hhhhcCCCCCCC--C----CCchHHHHHhHHhhHHHHHHHH---hc-----
Q 002877 275 -----EEAVALQAVEFWSSICDEEIE---LQEFENPETGDS--D----SPNYHFIEKARSSLVPMLLETL---LK----- 332 (872)
Q Consensus 275 -----~~~~~~~al~~l~~l~~~~~~---~~~~~~~~~~~~--~----~~~~~~~~~~l~~l~~~l~~~l---~~----- 332 (872)
-++..++++..+..+...... .....+...+.. . .++..+..+-+..+...++.+. +.
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe 392 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE 392 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 244556666666544332111 000000000000 0 0001111112222333333221 11
Q ss_pred ccCCcc-----cCCCCc--chhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCC---------cchHHHHHHHHHHhh
Q 002877 333 QEEDQD-----QDDSIW--NISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSD---------WRCREAATYAFGSVL 396 (872)
Q Consensus 333 ~~~d~~-----~d~~~~--~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~---------~~~r~aal~~l~~i~ 396 (872)
..+|++ ++-..| ++|.+|......+...+++.+.|.++.++.+..+... .-.+.|...++|.-+
T Consensus 393 W~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a 472 (978)
T KOG1993|consen 393 WTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAA 472 (978)
T ss_pred HhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 111221 111235 7899999999999999999999999999865544321 223445555555544
Q ss_pred cCCCcc--chhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--Ch
Q 002877 397 EGPTID--KLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--AP 471 (872)
Q Consensus 397 ~~~~~~--~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~ 471 (872)
.... + .+...+. .++|-+- --.+....+|+..+|.+|+....-. ..+..+.+..+++..++| +.
T Consensus 473 ~~l~-~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~---------~~e~k~l~Y~a~lnLL~d~~D~ 541 (978)
T KOG1993|consen 473 YELS-NILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQ---------KLELKPLLYCAFLNLLQDQNDL 541 (978)
T ss_pred HHHH-hcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheec---------hHhHHHHHHHHHHHhcCccccc
Confidence 3321 1 1222222 2233322 1112334578999999998776332 234556667777888887 67
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 002877 472 NVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELL 551 (872)
Q Consensus 472 ~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~ 551 (872)
.|+..++.++..++++.. .+++.+.||++.+...+.+.+..... .+.|...+..++.++...+ +...||..+++
T Consensus 542 vV~Ltt~~tlkl~vDD~n---F~~dsFlp~lenlf~~lfkll~~~~e--~Dtk~~VL~~ls~lI~r~~-e~I~P~~~~iv 615 (978)
T KOG1993|consen 542 VVRLTTARTLKLVVDDWN---FSEDSFLPYLENLFVLLFKLLKAVEE--CDTKTSVLNLLSTLIERVS-EHIAPYASTIV 615 (978)
T ss_pred eeehHHHHHHHHhhhhcc---CChhhhhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence 789999999999998873 45888899999999888888874432 3348899999999999988 77778888888
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC---ChhHHHH
Q 002877 552 PAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR---SSTVHEE 628 (872)
Q Consensus 552 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~v~~~ 628 (872)
..+-..|+.. ....-+|..++.++.++++++|. .-.+..+-+++.+--..+-. ....-+.
T Consensus 616 q~lp~LWe~s-----------~~e~lLr~alL~~L~~lV~alg~------qS~~~~~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 616 QYLPLLWEES-----------EEEPLLRCALLATLRNLVNALGA------QSFEFYPFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred HHHHHHHhhh-----------ccCcHHHHHHHHHHHHHHHHhcc------CCccchHHHHHHHHHhcCCCCCceeehhhh
Confidence 7777777753 12234677888999999999998 33333344444443333322 3467788
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHHHHhc
Q 002877 629 AMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD-DKVLPFCDGIMSLLLNALS 702 (872)
Q Consensus 629 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~ 702 (872)
++..++.+..+. +.+.|-+-.++|.+...+..+. +....++..+...+---+ .-+..|...+...+.+.+.
T Consensus 679 gmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~st--e~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 679 GMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQST--ENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred HHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 999988876655 3344444455555555554332 123334444433322211 2233455555555555554
No 16
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.95 E-value=4.6e-22 Score=197.88 Aligned_cols=715 Identities=13% Similarity=0.145 Sum_probs=448.8
Q ss_pred CCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcC--CChhHhhHHHHHHHHHHHhhcC--
Q 002877 50 EKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLAS--PVPEARHTSAQVIAKIASIEIP-- 125 (872)
Q Consensus 50 ~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~--~~~~vr~~~~~~l~~i~~~~~p-- 125 (872)
++++++|..|-..|++.-+ ....+.-..+.+.|.+ +++.+|-.++.++..-....-|
T Consensus 16 spD~n~rl~aE~ql~~l~~-------------------~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~ 76 (858)
T COG5215 16 SPDPNARLRAEAQLLELQS-------------------GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPEL 76 (858)
T ss_pred CCCCCccccHHHHHHHhcc-------------------ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHH
Confidence 3567888888777766443 2223344456677766 4578888888777653321111
Q ss_pred ----CCCchH--------HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHH
Q 002877 126 ----QKQWPE--------LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAE 193 (872)
Q Consensus 126 ----~~~~~~--------ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~ 193 (872)
.+.|.. +-...++.+.++ .+..-..|...++.+...--| ...++.++..+.....+. +...
T Consensus 77 ~~~~~qrW~~~~~E~k~qvK~~al~aL~s~--epr~~~~Aaql~aaIA~~Elp----~~~wp~lm~~mv~nvg~e-qp~~ 149 (858)
T COG5215 77 QKGCSQRWLGMRHESKEQVKGMALRALKSP--EPRFCTMAAQLLAAIARMELP----NSLWPGLMEEMVRNVGDE-QPVS 149 (858)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHhhCc----cccchHHHHHHHHhcccc-CchH
Confidence 125633 333345666676 677777788888888765222 344666666666666664 4567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-hc-CCcHHHHHHHHHHHHH-HHHhhhhhhHH-hHHHHHHHHHH
Q 002877 194 VRLAATRALYNALDFALTNFQNEMERNYIMKVVCET-AK-SKEVEIRQAAFECLVS-IASTYYEVLEP-YMQTLFELTSN 269 (872)
Q Consensus 194 vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~-~~~~~~~~~~~~~l~~-l~~~~~~~~~~-~l~~l~~~~~~ 269 (872)
++..++.+++...+...+..-..+. +.++-.+... .+ ..+..+|..++.+|.. +......+-.. .-+.+++....
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~~s-N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvce 228 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQMS-NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCE 228 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHHHh-hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeeh
Confidence 7888888888765432221111111 1233333333 32 4567789999998876 33221111111 11235555566
Q ss_pred HhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHH-HHHHhcccCCcccCCCCcchhh
Q 002877 270 AVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPML-LETLLKQEEDQDQDDSIWNISM 348 (872)
Q Consensus 270 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-~~~l~~~~~d~~~d~~~~~~r~ 348 (872)
..+.++.++...|+.++..+..-.. .|+++|+++.+-.+ ...|..+.+ .+..
T Consensus 229 atq~~d~e~q~aafgCl~kim~LyY------------------~fm~~ymE~aL~alt~~~mks~nd---------~va~ 281 (858)
T COG5215 229 ATQGNDEELQHAAFGCLNKIMMLYY------------------KFMQSYMENALAALTGRFMKSQND---------EVAI 281 (858)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhcCcch---------HHHH
Confidence 6677899999999999888876432 35666666433332 233332221 1222
Q ss_pred hHHHHHHHHHhh----------cC--------------CcchhchHHHHHhhcc---CCCcchHHHHHHHHHHhhcCCCc
Q 002877 349 AGGTCLGLVART----------VG--------------DEVVPLVMPFVEANIV---KSDWRCREAATYAFGSVLEGPTI 401 (872)
Q Consensus 349 ~a~~~l~~l~~~----------~~--------------~~~~~~l~~~l~~~l~---~~~~~~r~aal~~l~~i~~~~~~ 401 (872)
.+.+....+++. +| ..++|.++..+...-. .++|....+|-.||.-++..++.
T Consensus 282 qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd 361 (858)
T COG5215 282 QAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD 361 (858)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence 222222222211 11 2245666666655333 34699999999999999988763
Q ss_pred cchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHH
Q 002877 402 DKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGA 480 (872)
Q Consensus 402 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~a 480 (872)
+ .+..++.++-+.+..+++.-|++|..++|.+..--.. .....++++.+|.+...+.| .--|+..+.|+
T Consensus 362 ~----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~------~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc 431 (858)
T COG5215 362 K----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE------DCLTKIVPQALPGIENEMSDSCLWVKSTTAWC 431 (858)
T ss_pred H----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH------HHHHhhHHhhhHHHHHhcccceeehhhHHHHH
Confidence 3 2445889999999999999999999999988653332 23456777788887777777 66788999999
Q ss_pred HHHHHHhhccCCCCCCCchh--hHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHH
Q 002877 481 IYYLAQGYEDAGPSSSLLSP--YLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN--ITETSQIIAELLPAIMG 556 (872)
Q Consensus 481 l~~l~~~~~~~~~~~~~l~~--~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~--~~~~~~~~~~l~~~l~~ 556 (872)
++.+++.. +..+.| |+...+...+..+. | ...+-....+....++.+.+ ..+....+..+.+.+++
T Consensus 432 ~g~iad~v------a~~i~p~~Hl~~~vsa~liGl~--D--~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~ 501 (858)
T COG5215 432 FGAIADHV------AMIISPCGHLVLEVSASLIGLM--D--CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILN 501 (858)
T ss_pred HHHHHHHH------HHhcCccccccHHHHHHHhhhh--c--cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHH
Confidence 99999987 566655 55666666666555 3 23335566667777776655 01123334444444444
Q ss_pred HHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH----HHHHHHHHHH-------HccCC---
Q 002877 557 RLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA----DQIMVLFLRV-------FACRS--- 622 (872)
Q Consensus 557 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~----~~l~~~l~~~-------l~~~~--- 622 (872)
.|-..-+ -.....+.|....++|+.++.-.++ .+.+.+ .-++..+-++ +...+
T Consensus 502 ~Lv~~t~-------~~~Ne~n~R~s~fsaLgtli~~~~d------~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~ 568 (858)
T COG5215 502 ALVKGTE-------LALNESNLRVSLFSALGTLILICPD------AVSDILAGFYDYTSKKLDECISVLGQILATEDQLL 568 (858)
T ss_pred HHHHHHH-------hhccchhHHHHHHHHHHHHHhhcch------hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 4433211 1123345677778888888776665 333322 2222222222 22222
Q ss_pred -hhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 002877 623 -STVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNAL 701 (872)
Q Consensus 623 -~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 701 (872)
.++....+..+..++...+..+.+.-++++..+++.+++.+..-+-.....+++.++.+.++.|..|++.++|.+.+.|
T Consensus 569 ~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al 648 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL 648 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 2344455666777777777788888888999999988876443355667888999999999999999999999999999
Q ss_pred cCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccch
Q 002877 702 SNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKS 781 (872)
Q Consensus 702 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 781 (872)
+.. ++.+-..+...+|+++..+|.+|-+|.+.++..|.+.++.+. ...+++..+++++..+..+++.
T Consensus 649 n~~--d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~-----------~~R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 649 NCT--DRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEA-----------THRDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred cch--hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChh-----------hccccchHHHHHHHHHHHHHhh
Confidence 665 888889999999999999999999999999999999887632 2347889999999999999887
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCCC-----CCHhHHHHHHHHHHHHHhhhCcchhh-hccCchHHHHHHHHHhc--CCcH
Q 002877 782 ARAEVMMPYAQHLLQFIELIFKDNH-----RDENVTKAAVAVMGDLADALGPNTKL-LFKDSSFCNDFMSECLR--SDDE 853 (872)
Q Consensus 782 ~~~~~~~~~~~~il~~l~~~~~~~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~v~~ll~~~~~--~~~~ 853 (872)
+ |.+|++.|+-.+....+-.. .-.+.|..+...+.+-...+|..... --...+.|..+-+. .. -.||
T Consensus 716 ~----F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~-i~~iaeDp 790 (858)
T COG5215 716 N----FESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHK-IGMIAEDP 790 (858)
T ss_pred h----HHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHH-HHHhhcCC
Confidence 5 99999999988887743211 33567777777766655555543110 00112234444443 22 3455
Q ss_pred HHHHHHH-HHHHHHHHH
Q 002877 854 QLKETAG-WTQGMINRV 869 (872)
Q Consensus 854 ~~~~~a~-~~~~~~~~~ 869 (872)
+--++++ -++|.|..+
T Consensus 791 ~~se~~traalGLigDl 807 (858)
T COG5215 791 NGSEAHTRAALGLIGDL 807 (858)
T ss_pred ccchhHHHHHHHHHHHH
Confidence 5533333 667776644
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.94 E-value=5.4e-21 Score=195.70 Aligned_cols=723 Identities=14% Similarity=0.181 Sum_probs=472.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 4 EITQFLLAAQSADANIRNEAEANLRQLQ-QQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 4 ~~~~~l~~~~s~~~~~r~~A~~~L~~~~-~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
.+..+|...-++.+..|+.|-..|.+-. +-.....+..++.++.+++.+++-|++...++.+.+
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriL--------------- 428 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRIL--------------- 428 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHH---------------
Confidence 3667788888999999999999887633 322344567888888888889999999888887665
Q ss_pred hcCChHHHHHHHHHHH---HhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHH
Q 002877 83 LAIDISYKSQVKDLLL---RTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGY 159 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll---~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 159 (872)
.+++.-.+.++++.|+ ..+-+++...|..--++|+.+++.. ....++..+---+.+. ++-+|.....+++.
T Consensus 429 yklDdlvrpYVhkILvViepllided~yar~egreIisnLakaa----Gla~mistmrpDidn~--deYVRnttarafav 502 (1172)
T KOG0213|consen 429 YKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAA----GLATMISTMRPDIDNK--DEYVRNTTARAFAV 502 (1172)
T ss_pred HhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHh----hhHHHHHhhcCCcccc--cHHHHHHHHHHHHH
Confidence 2344555566666655 3566778888888888888887665 3444555555445454 67788888888887
Q ss_pred hhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHH
Q 002877 160 VCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQ 239 (872)
Q Consensus 160 l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 239 (872)
++..++ ++.++|.+-....+- .+++-|...+++...+..+++-..-. ...-++..+-.++.++...+|.
T Consensus 503 vasalg--------ip~llpfLkavc~Sk-kSwqaRhTgIkivqqIail~Gcsvlp--hl~~lv~ii~~gl~De~qkVR~ 571 (1172)
T KOG0213|consen 503 VASALG--------IPALLPFLKAVCGSK-KSWQARHTGIKIVQQIAILSGCSVLP--HLKPLVKIIEHGLKDEQQKVRT 571 (1172)
T ss_pred HHHHhC--------cHHHHHHHHHHhccc-cchhhhchhhHHHHHHHHHhcchhhh--hhHHHHHHHHHhhcccchhhhh
Confidence 777664 344555544444442 47888888888888876654432111 1123677788888899999999
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC-CChHHH--HHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHH
Q 002877 240 AAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG-DEEAVA--LQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIE 316 (872)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~--~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (872)
.+..++..+++...++-...++.++..+...++. ...++. ..|+.++..+.+.+ +..
T Consensus 572 itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~e--------------------ya~ 631 (1172)
T KOG0213|consen 572 ITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAE--------------------YAS 631 (1172)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHH--------------------HHH
Confidence 9999999999887766666677777777666544 233322 34555555444432 222
Q ss_pred HhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC---CcchhchHHHHHhhccCCCcchHHHH-----
Q 002877 317 KARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG---DEVVPLVMPFVEANIVKSDWRCREAA----- 388 (872)
Q Consensus 317 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aa----- 388 (872)
-+...++-++..-...++| ...+.....++.++..-| +.+-..++|.+...+ |..|-|.
T Consensus 632 yyTrevmlil~rEf~sPDe---------emkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~f----w~rrmA~drr~y 698 (1172)
T KOG0213|consen 632 YYTREVMLILIREFGSPDE---------EMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSF----WGRRMALDRRNY 698 (1172)
T ss_pred HhHHHHHHHHHHhhCCChH---------HHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhh----hhhhhhccccch
Confidence 2222343343333322211 234554555665555544 111122333332222 3222221
Q ss_pred ---HHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHH
Q 002877 389 ---TYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLE 465 (872)
Q Consensus 389 ---l~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 465 (872)
...-..++...+ ...++..++.-+.|+.+..|..++.++.++...++... .....-+.++..++-
T Consensus 699 kqlv~ttv~ia~KvG-------~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~d-----iderleE~lidgil~ 766 (1172)
T KOG0213|consen 699 KQLVDTTVEIAAKVG-------SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAAD-----IDERLEERLIDGILY 766 (1172)
T ss_pred hhHHHHHHHHHHHhC-------chHHHHHHhhhhccccHHHHHHHHHHHHHHHhcccccc-----ccHHHHHHHHHHHHH
Confidence 112223333222 12556777778899999999999999999998888622 233445677788887
Q ss_pred Hhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccH
Q 002877 466 SIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETS 544 (872)
Q Consensus 466 ~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~ 544 (872)
.++. ..... --...|+.++..+ +....||+++|+..++..+++. ..++|..+.+.++.++.......-.
T Consensus 767 Afqeqtt~d~-vml~gfg~V~~~l------g~r~kpylpqi~stiL~rLnnk---sa~vRqqaadlis~la~Vlktc~ee 836 (1172)
T KOG0213|consen 767 AFQEQTTEDS-VMLLGFGTVVNAL------GGRVKPYLPQICSTILWRLNNK---SAKVRQQAADLISSLAKVLKTCGEE 836 (1172)
T ss_pred HHHhcccchh-hhhhhHHHHHHHH------hhccccchHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhccHH
Confidence 7775 22211 2345577777777 7778999999999999999844 4678999999999887654300001
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChh
Q 002877 545 QIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSST 624 (872)
Q Consensus 545 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 624 (872)
..+..+--.+.+.+. +.++++...++.++-.|++..|.. .+.|-+..+++.+...|.+....
T Consensus 837 ~~m~~lGvvLyEylg-------------eeypEvLgsILgAikaI~nvigm~-----km~pPi~dllPrltPILknrheK 898 (1172)
T KOG0213|consen 837 KLMGHLGVVLYEYLG-------------EEYPEVLGSILGAIKAIVNVIGMT-----KMTPPIKDLLPRLTPILKNRHEK 898 (1172)
T ss_pred HHHHHhhHHHHHhcC-------------cccHHHHHHHHHHHHHHHHhcccc-----ccCCChhhhcccchHhhhhhHHH
Confidence 112222222233222 345677888899999999999886 77888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHH--HhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 002877 625 VHEEAMLAIGALAYATGPEF--AKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALS 702 (872)
Q Consensus 625 v~~~a~~~l~~l~~~~~~~~--~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 702 (872)
+.+.++.+++.++...++.+ ..++.-.+..+ ..|.. ...++|.+|...+|.|++.+|.+ +++..|++.|.
T Consensus 899 Vqen~IdLvg~IadrgpE~v~aREWMRIcfeLl-elLka-hkK~iRRaa~nTfG~IakaIGPq------dVLatLlnnLk 970 (1172)
T KOG0213|consen 899 VQENCIDLVGTIADRGPEYVSAREWMRICFELL-ELLKA-HKKEIRRAAVNTFGYIAKAIGPQ------DVLATLLNNLK 970 (1172)
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHH-HHHHHHHHHHhhhhHHHHhcCHH------HHHHHHHhcch
Confidence 99999999999998776522 33444444333 33333 34679999999999999999854 78888888888
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchh
Q 002877 703 NSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSA 782 (872)
Q Consensus 703 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 782 (872)
.. ++..|.....+++-++..+|. | .++|.+++-.+. .+ -.+...++.++..+..-
T Consensus 971 vq--eRq~RvcTtvaIaIVaE~c~p-F-----tVLPalmneYrt-----------Pe--~nVQnGVLkalsf~Fey---- 1025 (1172)
T KOG0213|consen 971 VQ--ERQNRVCTTVAIAIVAETCGP-F-----TVLPALMNEYRT-----------PE--ANVQNGVLKALSFMFEY---- 1025 (1172)
T ss_pred HH--HHHhchhhhhhhhhhhhhcCc-h-----hhhHHHHhhccC-----------ch--hHHHHhHHHHHHHHHHH----
Confidence 76 677787877888887777764 1 355666543211 00 13444445555444443
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHH---HhcCCcHHHHHHH
Q 002877 783 RAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSE---CLRSDDEQLKETA 859 (872)
Q Consensus 783 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~---~~~~~~~~~~~~a 859 (872)
.++.-..|+-.+.+.|...+.| .+..-|+.|+.+|.-++-.+..-.- .+...-|++. -.-+++|.++++-
T Consensus 1026 igemskdYiyav~PlleDAlmD--rD~vhRqta~~~I~Hl~Lg~~g~g~-----eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1026 IGEMSKDYIYAVTPLLEDALMD--RDLVHRQTAMNVIKHLALGVPGTGC-----EDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred HHHHhhhHHHHhhHHHHHhhcc--ccHHHHHHHHHHHHHHhcCCCCcCc-----HHHHHHHHHHhhhhhcCCChHHHHHH
Confidence 3455778999999999998877 5678889999999998876554322 2222223332 1336889999999
Q ss_pred HHHHHHHHHHhc
Q 002877 860 GWTQGMINRVLV 871 (872)
Q Consensus 860 ~~~~~~~~~~~~ 871 (872)
-.+++.+...|.
T Consensus 1099 ~e~~eg~r~~Lg 1110 (1172)
T KOG0213|consen 1099 DEAMEGLRVALG 1110 (1172)
T ss_pred HHHHHHHHHHhc
Confidence 999888877663
No 18
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.2e-18 Score=177.06 Aligned_cols=613 Identities=16% Similarity=0.193 Sum_probs=386.8
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 4 EITQFLLAAQSA-DANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 4 ~~~~~l~~~~s~-~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
.+.+++..+.++ +++....+.++|.+.+.. |..|..-.++++. +...++|.++|..|.-.++ .+|
T Consensus 8 ~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S--~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~-----------~~~ 73 (982)
T KOG2022|consen 8 TVEELVTTLYSHRNHENDAITQKWLQDAQCS--QQGWHFSWQLLQP-DKSSEVQYFGALTLHDKIN-----------TRW 73 (982)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhh--HHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHH-----------hhh
Confidence 577888888887 889999999999999998 8999888888876 4678889999999987775 578
Q ss_pred hcCChHHHHHHHHHHHHhhcC---CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCC---ccHHH-HHHHHH
Q 002877 83 LAIDISYKSQVKDLLLRTLAS---PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQD---SLAAL-KQATLE 155 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~---~~~~~-r~~al~ 155 (872)
+.++++....++..++..+.- ....|-++.+..++.++-+..|+ .||.-+..++..++... .+.+. -...++
T Consensus 74 e~~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d-~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le 152 (982)
T KOG2022|consen 74 EECPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPD-LWPTAIQDVIPTLQGQASPLVLADINCEILLE 152 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccc-cCCchHHHHHHHHhcccCccccchhhHHHHHH
Confidence 899999999999999986542 34667788888888888888884 99999999998887641 11122 233344
Q ss_pred HHHHhhhccCc--------ccc-c--hhh---HHHHHHHHHhcccCCCCCH----HHHHHHHHHHHHHHHHHHhh-----
Q 002877 156 TLGYVCEEISH--------QDL-V--QDE---VNAVLTAVVQGMNLAEHSA----EVRLAATRALYNALDFALTN----- 212 (872)
Q Consensus 156 ~l~~l~~~~~~--------~~l-~--~~~---~~~l~~~l~~~l~~~~~~~----~vr~~al~~l~~~~~~~~~~----- 212 (872)
.|+.+..+... ..+ + ... ...++..+++...+. ... -++..+++|+..|+.++.-.
T Consensus 153 ~Ls~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~-t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~ 231 (982)
T KOG2022|consen 153 VLSFMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNS-TSSLINLIFKQAAVDCVEQWIRYISLTGMDCD 231 (982)
T ss_pred HhccCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccc-cHHHHHHHhhhHHHHHHHHHHHHhccccccHH
Confidence 45433333220 001 0 111 122333334333321 222 57788999999988643210
Q ss_pred ------hhhhh---------------------H-------------------HH---HHHHHHHH----------hhcCC
Q 002877 213 ------FQNEM---------------------E-------------------RN---YIMKVVCE----------TAKSK 233 (872)
Q Consensus 213 ------~~~~~---------------------~-------------------~~---~ll~~l~~----------~~~~~ 233 (872)
++.-. . ++ .+.+.+.. ..++.
T Consensus 232 ~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~ 311 (982)
T KOG2022|consen 232 QITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENA 311 (982)
T ss_pred HHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 00000 0 00 01111100 01111
Q ss_pred c--HHHHHHHHHHHHHHHHhhhhhhHHhH---------HHHHHHHHHHhcC-----CChHHHHHHHHhHhHHhHhhhhhh
Q 002877 234 E--VEIRQAAFECLVSIASTYYEVLEPYM---------QTLFELTSNAVKG-----DEEAVALQAVEFWSSICDEEIELQ 297 (872)
Q Consensus 234 ~--~~~~~~~~~~l~~l~~~~~~~~~~~l---------~~l~~~~~~~~~~-----~~~~~~~~al~~l~~l~~~~~~~~ 297 (872)
+ ++.-...+.+....++.+...+..+. ..+++.+.....- -++.+...++.||.++.+.-....
T Consensus 312 d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~ 391 (982)
T KOG2022|consen 312 DASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI 391 (982)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 1 22222222222333332222211111 1233333222221 245567788999999987543221
Q ss_pred hhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCc------ccCCCCcchhhhHHHHHHHHHhhcCCcchhchHH
Q 002877 298 EFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQ------DQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMP 371 (872)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~------~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~ 371 (872)
.+ ....++..+.++.+-+++.+++..+.-+.+.. |+-|..-..|+...+++...-..+|+.+...+..
T Consensus 392 ~e------~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~ 465 (982)
T KOG2022|consen 392 NE------TQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLID 465 (982)
T ss_pred hc------cCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 01111234555777889999888886543211 1111223678888899998888899999999999
Q ss_pred HHHhhccCCC-----cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhccCCC
Q 002877 372 FVEANIVKSD-----WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA-MRDENNHVKDTTAWTLSRIFELLHCPA 445 (872)
Q Consensus 372 ~l~~~l~~~~-----~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
.+.+.+.+.+ |..-++.+..+..+++..+ ....+.++.++....+. ++-.+|..-.++...+|.++.|+.+
T Consensus 466 ~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e-- 542 (982)
T KOG2022|consen 466 TLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE-- 542 (982)
T ss_pred HHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc--
Confidence 9988888755 9999999999999999886 55555555554443332 2345889999999999999999986
Q ss_pred CCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHH
Q 002877 446 TGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRS 525 (872)
Q Consensus 446 ~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~ 525 (872)
.+.|++..++.|++.+. +++-...+...+.++|+.| +..+.||..+++......+++....++ .|.
T Consensus 543 ------~P~~ln~sl~~L~~~Lh-~sk~s~q~i~tl~tlC~~C------~~~L~py~d~~~a~~~e~l~~~~~~~S-~~~ 608 (982)
T KOG2022|consen 543 ------HPMYLNPSLPLLFQGLH-NSKESEQAISTLKTLCETC------PESLDPYADQFSAVCYEVLNKSNAKDS-DRL 608 (982)
T ss_pred ------CCcccCchHHHHHHHhc-CchHHHHHHHHHHHHHHhh------hhhCchHHHHHHHHHHHHhcccccCch-HHH
Confidence 56789999999999998 5555566777799999999 899999999999999888876433334 499
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHH-HHHHHHHHHHHHHcCCCc------c
Q 002877 526 AAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQ-ASLCGVLQVIIQKFSSTD------A 598 (872)
Q Consensus 526 ~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~------~ 598 (872)
.++.++|.+......++...|+..++.++++.+...+...+- ++ ...++ ...+.+++++..++..+. .
T Consensus 609 klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~---~~--e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~ 683 (982)
T KOG2022|consen 609 KLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGID---DQ--ENHLRIAFQLNTISALFTSLINKKDIIDTDQ 683 (982)
T ss_pred HHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCC---CH--HHHHHHHHHHHHHHHHHhccCCCCccccccc
Confidence 999999999987764677889999999998888876433221 11 11121 223457777776664321 0
Q ss_pred ch--------hhchhhHHHHHHHHHHHHcc--CChhHHHHHHHHHHHHHHHhhhHH-HhhhHHHHHHHHhhhc
Q 002877 599 TK--------SFILQTADQIMVLFLRVFAC--RSSTVHEEAMLAIGALAYATGPEF-AKYMPEFYQYLQMGLQ 660 (872)
Q Consensus 599 ~~--------~~~~~~~~~l~~~l~~~l~~--~~~~v~~~a~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~ 660 (872)
+- ..+.....++++.+-+.++- ....+.+.+...+..=.....+.| .|+++.+.+++.....
T Consensus 684 ~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 684 PEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred hhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 00 01112233444444444332 144555555544433234444557 7888999888887543
No 19
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.90 E-value=2.7e-17 Score=166.10 Aligned_cols=522 Identities=16% Similarity=0.245 Sum_probs=335.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhc
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLA 84 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~ 84 (872)
+-+++.....|+...+++|++-|.+|+.. |+.|...-+||.+ +..++.+..|..+|...+. .+|.-
T Consensus 16 lDkVVttfyqg~g~~q~qAq~iLtkFq~~--PdaWtkad~IL~~-S~~pqskyiALs~LdklIt-----------tkWkl 81 (1053)
T COG5101 16 LDKVVTTFYQGDGRKQEQAQRILTKFQEL--PDAWTKADYILNN-SKLPQSKYIALSLLDKLIT-----------TKWKL 81 (1053)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhC--chHHHHHHHHHhc-ccCcchhhhHHHHHHHHHH-----------hhhhh
Confidence 34677888899999999999999999998 9999999999998 4688999999999988875 57899
Q ss_pred CChHHHHHHHHHHHHhhcC--CChh-------HhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHH
Q 002877 85 IDISYKSQVKDLLLRTLAS--PVPE-------ARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLE 155 (872)
Q Consensus 85 l~~~~~~~i~~~Ll~~l~~--~~~~-------vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~ 155 (872)
++.+.+..||+-.++...+ .+.. +-+.+-..+..|++.+||. .||+++|.+++..+. +-.+-+..+.
T Consensus 82 lp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~-nWP~FIpeli~~S~~---s~~vCeNnmi 157 (1053)
T COG5101 82 LPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPR-NWPTFIPELINVSQI---SMEVCENNMI 157 (1053)
T ss_pred CCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhccc-ccchhhHHHHhhccc---hHHHHhccHH
Confidence 9999999999999986643 2333 4466777888999999996 999999999997764 4667777777
Q ss_pred HHHHhhhccC---ccccc-----------hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 002877 156 TLGYVCEEIS---HQDLV-----------QDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNY 221 (872)
Q Consensus 156 ~l~~l~~~~~---~~~l~-----------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 221 (872)
+|..+.+++. .+.++ ....++++..+.+.+..+ .++.+-.+.+..|..++.+++-.+--+ .-
T Consensus 158 vLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~-~~~SLi~ATLesllrfl~wiPl~yIfe---Tn 233 (1053)
T COG5101 158 VLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYS-RDESLIEATLESLLRFLEWIPLDYIFE---TN 233 (1053)
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhCchhHHHH---HH
Confidence 7777766642 12110 334667777777777654 356677777777776665543322111 11
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhh--hh-------hhH---------------------------------Hh
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTY--YE-------VLE---------------------------------PY 259 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~~-------~~~---------------------------------~~ 259 (872)
++..+...+. ..++.|..++.|+..+++.. |. .+. .+
T Consensus 234 IieLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~F 312 (1053)
T COG5101 234 IIELVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIF 312 (1053)
T ss_pred HHHHHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHH
Confidence 2333332222 13444555555555544321 00 000 00
Q ss_pred HHHHHH---------------------------HHHHHhcCCChHHHHHHHHhHhHHhHhhh-hhhhhcCCCC-------
Q 002877 260 MQTLFE---------------------------LTSNAVKGDEEAVALQAVEFWSSICDEEI-ELQEFENPET------- 304 (872)
Q Consensus 260 l~~l~~---------------------------~~~~~~~~~~~~~~~~al~~l~~l~~~~~-~~~~~~~~~~------- 304 (872)
+..+.. .+++..+-.+.++-..|+++|..++-.-. +...-.+.++
T Consensus 313 vq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls 392 (1053)
T COG5101 313 VQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLS 392 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhcc
Confidence 001100 11111122455667788999988864321 1100000010
Q ss_pred -C----------CCCC-CchHHHHHhHHhhHHHHHHHHhcccCC----cccCC---------CCcchhhhHHHHHHHHHh
Q 002877 305 -G----------DSDS-PNYHFIEKARSSLVPMLLETLLKQEED----QDQDD---------SIWNISMAGGTCLGLVAR 359 (872)
Q Consensus 305 -~----------~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~d----~~~d~---------~~~~~r~~a~~~l~~l~~ 359 (872)
| .... -..+.....+.++.-++...|.+++|- +|+.| +.....+....+|-.+..
T Consensus 393 ~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLth 472 (1053)
T COG5101 393 VGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTH 472 (1053)
T ss_pred ccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhh
Confidence 0 0000 012333455666666677777666541 11111 223445555666666665
Q ss_pred hcCCcchhchHHHHHhhccCCC--cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc-----CCCcHHHHHHHHH
Q 002877 360 TVGDEVVPLVMPFVEANIVKSD--WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM-----RDENNHVKDTTAW 432 (872)
Q Consensus 360 ~~~~~~~~~l~~~l~~~l~~~~--~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l-----~d~~~~vr~~a~~ 432 (872)
..-......+...+...+...+ |..-..-++++|+++...+...-+.++..++..++... +|....|....+.
T Consensus 473 L~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMy 552 (1053)
T COG5101 473 LIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMY 552 (1053)
T ss_pred hhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceee
Confidence 5545555566677776666654 66777889999999877653344456667777766554 5777777788888
Q ss_pred HHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC--CCCCCCchhhHHHHHHHH
Q 002877 433 TLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA--GPSSSLLSPYLTSIIAEL 509 (872)
Q Consensus 433 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~il~~l 509 (872)
.+|++-.++.. ...++..++..|++.+.+ +..|+.-||..+-.+++.|..+ ...+..-.|++..|+..+
T Consensus 553 vvGQYpRFLka--------hw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl 624 (1053)
T COG5101 553 VVGQYPRFLKA--------HWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNL 624 (1053)
T ss_pred eeccchHHHHH--------HHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhh
Confidence 89988887763 567889999999999987 9999999999999999988532 112445578888888888
Q ss_pred HHhhccCCCcchhHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHHHHH
Q 002877 510 LRAADRTDVGGSKLRSAAYETLNEVVRCSNIT--ETSQIIAELLPAIMGRLGQT 561 (872)
Q Consensus 510 ~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~--~~~~~~~~l~~~l~~~l~~~ 561 (872)
-+..... + +...+..++|.+.+++..| . +....+-.++....+.|.+.
T Consensus 625 ~ktT~dL--~-pqQ~htfYeAcg~vIse~p-~~~~~~rlv~dlm~Lpn~aw~ni 674 (1053)
T COG5101 625 PKTTGDL--E-PQQKHTFYEACGMVISEVP-KTRDYKRLVLDLMDLPNSAWLNI 674 (1053)
T ss_pred hhhcccC--C-hHHHhHHHHHHhHHHhccc-hhhHHHHHHHHHHHhhHHHHHHH
Confidence 7766532 2 3347889999999999887 2 22233344455555555444
No 20
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=1.1e-17 Score=171.89 Aligned_cols=640 Identities=14% Similarity=0.170 Sum_probs=413.5
Q ss_pred CCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHH
Q 002877 103 SPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVV 182 (872)
Q Consensus 103 ~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~ 182 (872)
+.++.||+..+.+++.++.+. ..+.++|+|...+.|.. ++..|+.++.+.++++.-.+ -.. .+|+..++..+.
T Consensus 487 n~deYVRnttarafavvasal----gip~llpfLkavc~Skk-SwqaRhTgIkivqqIail~G-csv-lphl~~lv~ii~ 559 (1172)
T KOG0213|consen 487 NKDEYVRNTTARAFAVVASAL----GIPALLPFLKAVCGSKK-SWQARHTGIKIVQQIAILSG-CSV-LPHLKPLVKIIE 559 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHhcccc-chhhhchhhHHHHHHHHHhc-chh-hhhhHHHHHHHH
Confidence 457999999999999999886 67889999999888852 67899999999999998874 334 689999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhH-HhHH
Q 002877 183 QGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLE-PYMQ 261 (872)
Q Consensus 183 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~ 261 (872)
+++.| .+-.||..+..++..+.+.... +..+. .+.++.-+.+.....-.....+-+..++-++........ -|-.
T Consensus 560 ~gl~D--e~qkVR~itAlalsalaeaa~P-ygie~-fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTr 635 (1172)
T KOG0213|consen 560 HGLKD--EQQKVRTITALALSALAEAATP-YGIEQ-FDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTR 635 (1172)
T ss_pred Hhhcc--cchhhhhHHHHHHHHHHHhcCC-cchHH-HHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHH
Confidence 99999 5778999888888887654322 11111 122555555554322222222222333333221111111 2233
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCC
Q 002877 262 TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDD 341 (872)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~ 341 (872)
.++-.++..+.++|++.+...+..+..+|....- .+.|+. ..++|.++........--|-
T Consensus 636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv---------------~~~y~r---~dilp~ff~~fw~rrmA~dr-- 695 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATDGV---------------EPAYIR---FDILPEFFFSFWGRRMALDR-- 695 (1172)
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCC---------------CHHHHh---hhhhHHHHhhhhhhhhhccc--
Confidence 5666777888999999999999999888875320 122332 35666666543211100000
Q ss_pred CCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhH-HhHHHHHHHhcC
Q 002877 342 SIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLV-HAGFDFLLNAMR 420 (872)
Q Consensus 342 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~l~~~l~ 420 (872)
-+. +...+.-..++...|. ..++.-+..-+.|+....|.-.+-+...+....+...+...+ ..++..++..++
T Consensus 696 --r~y-kqlv~ttv~ia~KvG~---~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afq 769 (1172)
T KOG0213|consen 696 --RNY-KQLVDTTVEIAAKVGS---DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQ 769 (1172)
T ss_pred --cch-hhHHHHHHHHHHHhCc---hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 011 1113344455555552 223344444456777777877777666666554433333333 366777777775
Q ss_pred CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCch
Q 002877 421 DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLS 499 (872)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~ 499 (872)
.+..... ..+..+|.++..+.. ...+|++++...++..|++ .+.||.+|+..++.++......+ ...+-
T Consensus 770 eqtt~d~-vml~gfg~V~~~lg~-------r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~--ee~~m 839 (1172)
T KOG0213|consen 770 EQTTEDS-VMLLGFGTVVNALGG-------RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG--EEKLM 839 (1172)
T ss_pred hcccchh-hhhhhHHHHHHHHhh-------ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc--HHHHH
Confidence 4433222 334555666655554 5678999999999999998 99999999999988886542100 11122
Q ss_pred hhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHH
Q 002877 500 PYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQ 579 (872)
Q Consensus 500 ~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 579 (872)
.|+.. .|...+. .+...+.-..+.|+..++...+.....+-+..++|.+..+|.+- ...++
T Consensus 840 ~~lGv---vLyEylg---eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-------------heKVq 900 (1172)
T KOG0213|consen 840 GHLGV---VLYEYLG---EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-------------HEKVQ 900 (1172)
T ss_pred HHhhH---HHHHhcC---cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-------------HHHHH
Confidence 23222 2233333 23456677888888888888875566777788888888888743 45577
Q ss_pred HHHHHHHHHHHHHcCCCccchhhchh--hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHh
Q 002877 580 ASLCGVLQVIIQKFSSTDATKSFILQ--TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQM 657 (872)
Q Consensus 580 ~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 657 (872)
.+++..++.|+..-++ .+.+ +. .+.=.|++.|...+..+|..|...+|.++++.|++ +++..|++
T Consensus 901 en~IdLvg~IadrgpE------~v~aREWM-RIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------dVLatLln 967 (1172)
T KOG0213|consen 901 ENCIDLVGTIADRGPE------YVSAREWM-RICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------DVLATLLN 967 (1172)
T ss_pred HHHHHHHHHHHhcCcc------cCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------HHHHHHHh
Confidence 8888888888866555 2222 22 33334566677778899999999999999999874 67777777
Q ss_pred hhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHH
Q 002877 658 GLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHAL 737 (872)
Q Consensus 658 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~ 737 (872)
.|+.. +.+.|...--+++..+..++ || .++|.|..-...+ +.++...++.+++-+....|+.-..|+-.+.
T Consensus 968 nLkvq-eRq~RvcTtvaIaIVaE~c~----pF--tVLPalmneYrtP--e~nVQnGVLkalsf~FeyigemskdYiyav~ 1038 (1172)
T KOG0213|consen 968 NLKVQ-ERQNRVCTTVAIAIVAETCG----PF--TVLPALMNEYRTP--EANVQNGVLKALSFMFEYIGEMSKDYIYAVT 1038 (1172)
T ss_pred cchHH-HHHhchhhhhhhhhhhhhcC----ch--hhhHHHHhhccCc--hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 77643 33333323333344444443 44 5677777767767 6788999999999999999988889999999
Q ss_pred HHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchh-hhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 002877 738 QMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSA-RAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAV 816 (872)
Q Consensus 738 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~ 816 (872)
|.+..++..+ +..-|.++.+++..+..+.-.. +.+.+.-.+.-+++-+ + + ..+.+.++..
T Consensus 1039 PlleDAlmDr-------------D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNI---l-e--~sPhviqa~~ 1099 (1172)
T KOG0213|consen 1039 PLLEDALMDR-------------DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNI---L-E--TSPHVIQAFD 1099 (1172)
T ss_pred HHHHHhhccc-------------cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhh---c-C--CChHHHHHHH
Confidence 9999886532 1234777777777776664332 3333322222233322 2 2 5788999999
Q ss_pred HHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHH
Q 002877 817 AVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKET 858 (872)
Q Consensus 817 ~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~ 858 (872)
.++..+...+|+.. +++..++. +-.+..+||..
T Consensus 1100 e~~eg~r~~Lg~~~--------~~~Y~~QG-LFHParkVR~~ 1132 (1172)
T KOG0213|consen 1100 EAMEGLRVALGPQA--------MLKYCLQG-LFHPARKVRKR 1132 (1172)
T ss_pred HHHHHHHHHhchHH--------HHHHHHHh-ccCcHHHHHHH
Confidence 99999999999853 46666665 77888888764
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=7.7e-19 Score=176.58 Aligned_cols=730 Identities=13% Similarity=0.131 Sum_probs=435.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 4 EITQFLLAAQSADANIRNEAEANLRQLQ-QQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 4 ~~~~~l~~~~s~~~~~r~~A~~~L~~~~-~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
.+..+|...-++++..|+.+-..|..-. +-.+...+..++.++.+-..+++-|++...++.+.+.
T Consensus 169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly-------------- 234 (975)
T COG5181 169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLY-------------- 234 (975)
T ss_pred hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHH--------------
Confidence 3566777778889999999988887633 3334556777888887766788889988888776653
Q ss_pred hcCChHHHHHHHHHHH---HhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHH
Q 002877 83 LAIDISYKSQVKDLLL---RTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGY 159 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll---~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 159 (872)
.+..-.+.++++.|+ ..+-+++...|..--+++..++...+ ....+..+-.-+.+. ++-+|...-.+.+.
T Consensus 235 -~lddl~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~G----l~~~vs~mrpDi~~~--deYVRnvt~ra~~v 307 (975)
T COG5181 235 -GLDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCG----LGFSVSSMRPDITSK--DEYVRNVTGRAVGV 307 (975)
T ss_pred -hcccccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhc----cceeeeeccCCcccc--cHHHHHHHHHHHHH
Confidence 222223334444333 24445666666666666666554432 222222232333333 45566655555655
Q ss_pred hhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHH
Q 002877 160 VCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQ 239 (872)
Q Consensus 160 l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 239 (872)
+++.++ +++++|.+-....+- .+++-|...+++...+..+++-..-. ...-++..+..++.+....+|.
T Consensus 308 va~alg--------v~~llpfl~a~c~Sr-kSw~aRhTgiri~qqI~~llG~s~l~--hl~~l~~ci~~~l~D~~~~vRi 376 (975)
T COG5181 308 VADALG--------VEELLPFLEALCGSR-KSWEARHTGIRIAQQICELLGRSRLS--HLGPLLKCISKLLKDRSRFVRI 376 (975)
T ss_pred HHHhhC--------cHHHHHHHHHHhcCc-cchhhhchhhHHHHHHHHHhCccHHh--hhhhHHHHHHHHhhccceeeee
Confidence 555442 233344333333331 35666666666666665544322111 0112566667777777888888
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC-CChHHH--HHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHH
Q 002877 240 AAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG-DEEAVA--LQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIE 316 (872)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~--~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (872)
.+...+..+++..+++-...++.++..+....+. ...+.. ..|..|+..+.+ +.|..
T Consensus 377 ~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~--------------------peYa~ 436 (975)
T COG5181 377 DTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMS--------------------PEYAC 436 (975)
T ss_pred hhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCC--------------------hHhhh
Confidence 8888898888877666556667777766655543 222221 233333333333 22333
Q ss_pred HhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHH--------
Q 002877 317 KARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAA-------- 388 (872)
Q Consensus 317 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa-------- 388 (872)
.+......+++..+..++|.- .+. .....+.+...+...-..+...+..-+.++-|+.|-|.
T Consensus 437 h~tre~m~iv~ref~spdeem---------kk~-~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v 506 (975)
T COG5181 437 HDTREHMEIVFREFKSPDEEM---------KKD-LLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQV 506 (975)
T ss_pred hhHHHHHHHHHHHhCCchhhc---------chh-HHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhccccccccee
Confidence 333455556665554332210 011 11222333333222111222222222223446555443
Q ss_pred HHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh
Q 002877 389 TYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK 468 (872)
Q Consensus 389 l~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 468 (872)
..+-..++...+ -+.++..++..++|+....|..++.+..++...++...| ....-+.++..++..++
T Consensus 507 ~~ttvilAk~~g-------~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~-----dErleerl~d~il~Afq 574 (975)
T COG5181 507 VLTTVILAKMGG-------DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGF-----DERLEERLYDSILNAFQ 574 (975)
T ss_pred ehhHHHHHHHcC-------ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccc-----cHHHHHHHHHHHHHHHH
Confidence 111112222111 124567778888999988999999999998888876322 22334456677777776
Q ss_pred c-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHH
Q 002877 469 D-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQII 547 (872)
Q Consensus 469 d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~ 547 (872)
. +..+. -...+|++..-.. +--..||++.|+..+++.+++. ...+|..+.+..+.++.....-.-...+
T Consensus 575 eq~~t~~-~il~~f~tv~vsl------~~r~kp~l~~ivStiL~~L~~k---~p~vR~~aadl~~sl~~vlk~c~e~~~l 644 (975)
T COG5181 575 EQDTTVG-LILPCFSTVLVSL------EFRGKPHLSMIVSTILKLLRSK---PPDVRIRAADLMGSLAKVLKACGETKEL 644 (975)
T ss_pred hcccccc-EEEecccceeeeh------hhccCcchHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4 21110 0112233333222 3334789999999999999854 3677999999888876543200111222
Q ss_pred HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHH
Q 002877 548 AELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHE 627 (872)
Q Consensus 548 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~ 627 (872)
..+--.+.+.+. +.++++...++.++-.|....+-. .+.|-+.++++.+...|.+....+..
T Consensus 645 ~klg~iLyE~lg-------------e~ypEvLgsil~Ai~~I~sv~~~~-----~mqpPi~~ilP~ltPILrnkh~Kv~~ 706 (975)
T COG5181 645 AKLGNILYENLG-------------EDYPEVLGSILKAICSIYSVHRFR-----SMQPPISGILPSLTPILRNKHQKVVA 706 (975)
T ss_pred HHHhHHHHHhcC-------------cccHHHHHHHHHHHHHHhhhhccc-----ccCCchhhccccccHhhhhhhHHHhh
Confidence 222222333222 334566677778888887776664 67777889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHH--HhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCC
Q 002877 628 EAMLAIGALAYATGPEF--AKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQ 705 (872)
Q Consensus 628 ~a~~~l~~l~~~~~~~~--~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 705 (872)
..+..++.++...++.+ ..++.-.+..+ ..|.+ .+.++|.+|...+|.|++.+|.+ +++..|++.|...
T Consensus 707 nti~lvg~I~~~~peyi~~rEWMRIcfeLv-d~Lks-~nKeiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLkvq- 777 (975)
T COG5181 707 NTIALVGTICMNSPEYIGVREWMRICFELV-DSLKS-WNKEIRRNATETFGCISRAIGPQ------DVLDILLNNLKVQ- 777 (975)
T ss_pred hHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHH-hhHHHHHhhhhhhhhHHhhcCHH------HHHHHHHhcchHH-
Confidence 99999999988776532 33444333333 23332 35679999999999999999854 7888888888877
Q ss_pred CCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhh
Q 002877 706 LNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAE 785 (872)
Q Consensus 706 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 785 (872)
++..|....-+++-++..+|.- .++|.+..-.+. . .-.+...++.++..+..-+ ++
T Consensus 778 -eRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~T-----------P--e~nVQnGvLkam~fmFeyi----g~ 833 (975)
T COG5181 778 -ERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYET-----------P--EANVQNGVLKAMCFMFEYI----GQ 833 (975)
T ss_pred -HHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccC-----------c--hhHHHHhHHHHHHHHHHHH----HH
Confidence 7788888888888888887741 345656543211 0 1134455555555555444 44
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 002877 786 VMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGM 865 (872)
Q Consensus 786 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~ 865 (872)
.-..|+-.|.+.+...+.| .+..-|+.|..+|.-++-+|+.....+...+ +++-+.-. .-+++|.++++---+++.
T Consensus 834 ~s~dYvy~itPlleDAltD--rD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH-LlNllwpN-Ile~sPhvi~~~~Eg~e~ 909 (975)
T COG5181 834 ASLDYVYSITPLLEDALTD--RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH-LLNLLWPN-ILEPSPHVIQSFDEGMES 909 (975)
T ss_pred HHHHHHHHhhHHHHhhhcc--cchHHHHHHHHHHHHHhcCCCCcccHHHHHH-HHHHhhhh-ccCCCcHHHHHHHHHHHH
Confidence 5778999999999998877 5688999999999999998876533222211 22222222 346899999999999999
Q ss_pred HHHHhcC
Q 002877 866 INRVLVS 872 (872)
Q Consensus 866 ~~~~~~~ 872 (872)
++.+|.+
T Consensus 910 ~~~~lg~ 916 (975)
T COG5181 910 FATVLGS 916 (975)
T ss_pred HHHHhcc
Confidence 9988753
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=2.6e-17 Score=194.53 Aligned_cols=773 Identities=12% Similarity=0.097 Sum_probs=458.8
Q ss_pred chHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcC---------hHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCc
Q 002877 3 MEITQFLLAAQSA--DANIRNEAEANLRQLQQQN---------LPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKD 71 (872)
Q Consensus 3 ~~~~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~ 71 (872)
+++..+++.+.++ +++.|++|...|..+.+.+ ..++++.|..+|.+ .+..+|..|+..|.+.-...
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s--g~~~vk~nAaaaL~nLS~~e- 89 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS--GTLGAKVNAAAVLGVLCKEE- 89 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCH-
Confidence 4678889999877 7889999999999887754 24467778888865 46889999887877764321
Q ss_pred ccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCc------hHHHHHHHHhhccCCc
Q 002877 72 ATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQW------PELIRSLLNNMTQQDS 145 (872)
Q Consensus 72 ~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~------~~ll~~l~~~l~~~~~ 145 (872)
.. ... +- ....-+.|+..|.+.+...|..++.+|..++.....+..| ...+|.|+..+++++.
T Consensus 90 ~n-----k~~---Iv---~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk 158 (2102)
T PLN03200 90 DL-----RVK---VL---LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK 158 (2102)
T ss_pred HH-----HHH---HH---HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch
Confidence 10 000 00 1223345788888889999999999999998653111122 4568899999887621
Q ss_pred cH-HHHHHHHHHHHHhhhccCccccchh-hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 002877 146 LA-ALKQATLETLGYVCEEISHQDLVQD-EVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIM 223 (872)
Q Consensus 146 ~~-~~r~~al~~l~~l~~~~~~~~l~~~-~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 223 (872)
.. ..++.+..+|..++..-+ ..- .. .-...+|.+...+.+ +++.++..|..++..++...... .......-.+
T Consensus 159 ~d~~L~~~Av~AL~nLs~~~e-n~~-~~IIeaGaVp~LV~LLsS--~d~~lQ~eAa~aLa~Lass~ee~-~~aVIeaGaV 233 (2102)
T PLN03200 159 QDKVVEGLLTGALRNLCGSTD-GFW-SATLEAGGVDILVKLLSS--GNSDAQANAASLLARLMMAFESS-ISKVLDAGAV 233 (2102)
T ss_pred hhHHHHHHHHHHHHHHhcCcc-chH-HHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCH
Confidence 12 245667788888887642 110 11 123477888888887 67899999988887664321111 0000001146
Q ss_pred HHHHHhhcC-CcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCC---------ChHHHHHHHHhHhHHhHh
Q 002877 224 KVVCETAKS-KEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGD---------EEAVALQAVEFWSSICDE 292 (872)
Q Consensus 224 ~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~---------~~~~~~~al~~l~~l~~~ 292 (872)
+.+.+++.+ .+..+|..|..+|..++...++.-....+ .-++.++..+..+ ....+..|.-.+.+++..
T Consensus 234 P~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 234 KQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 677777764 56789999999999998754332221111 1233333333322 234567788778888764
Q ss_pred hhhhhhhcCCCCCCCCCCchHHHHHhHH--hhHHHHHHHHhcccCCcccCCCCcch-h-hhHHHHHHHHHhhc-------
Q 002877 293 EIELQEFENPETGDSDSPNYHFIEKARS--SLVPMLLETLLKQEEDQDQDDSIWNI-S-MAGGTCLGLVARTV------- 361 (872)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~~l~~~l~~~~~d~~~d~~~~~~-r-~~a~~~l~~l~~~~------- 361 (872)
........... .. +..-...... .-++.+...+. .+ ++ . ... . ..+...|..+++..
T Consensus 314 ~~~ll~~L~~l----l~-s~rd~~~~ada~gALayll~l~d---~~-~~-~--~~~i~~~~v~~~LV~Llr~k~p~~vqe 381 (2102)
T PLN03200 314 MSALILYLGEL----SE-SPRSPAPIADTLGALAYALMVFD---SS-AE-S--TRAFDPTVIEQILVKLLKPRDTKLVQE 381 (2102)
T ss_pred chhhHHHHHHh----hc-ccchHHHHHHHHhhHHHHHHhcC---Cc-hh-h--hhhccccccHHHHHHHhCCCCCchhHH
Confidence 22110000000 00 0000000000 00011111110 00 00 0 000 0 01112222222221
Q ss_pred ----------CCcchh------chHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcH
Q 002877 362 ----------GDEVVP------LVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENN 424 (872)
Q Consensus 362 ----------~~~~~~------~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~ 424 (872)
|+.... ...+.+...+...+...+..++.++..++.+.. +....... ..+|.+++.|.++++
T Consensus 382 ~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s~s~ 460 (2102)
T PLN03200 382 RIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGLSSE 460 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcCCCH
Confidence 111000 112334444455567789999999999997753 33333333 678999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH-
Q 002877 425 HVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL- 502 (872)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~- 502 (872)
.+|..|+++++.++....+ ....-.-...++.|.+.|.. ++.+++.|+|++++++.+ .......+
T Consensus 461 ~iQ~~A~~~L~nLa~~nde------nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-------~~qir~iV~ 527 (2102)
T PLN03200 461 QQQEYAVALLAILTDEVDE------SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-------SEDIRACVE 527 (2102)
T ss_pred HHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-------cHHHHHHHH
Confidence 9999999999999853321 00000112467888888887 899999999999999863 22233333
Q ss_pred -HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHH
Q 002877 503 -TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQAS 581 (872)
Q Consensus 503 -~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 581 (872)
.+.++.++..+++. +...+..+.++|..++.... .. .++.++..+. + ++ ..++..
T Consensus 528 ~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d-~~-------~I~~Lv~LLl--------s-dd----~~~~~~ 583 (2102)
T PLN03200 528 SAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTAD-AA-------TISQLTALLL--------G-DL----PESKVH 583 (2102)
T ss_pred HCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccc-hh-------HHHHHHHHhc--------C-CC----hhHHHH
Confidence 25778888888743 35668999999999987654 22 2233333322 1 11 234556
Q ss_pred HHHHHHHHHHHcCCCccchhhchhh--HHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHh-hhHHHHHHHHhh
Q 002877 582 LCGVLQVIIQKFSSTDATKSFILQT--ADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAK-YMPEFYQYLQMG 658 (872)
Q Consensus 582 ~~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~ 658 (872)
++.++++++......+ ..... ....++.|.+++.+.+..+++.|..++..++....+.... .....+|.+...
T Consensus 584 aL~vLgnIlsl~~~~d----~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 584 VLDVLGHVLSVASLED----LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHhhcchhH----HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 6777877766444420 01100 1256788999999999999999999999998755443222 334678888888
Q ss_pred hcccchHhHHHHHHHHHHHHHHHhcCC-ccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhH-HH
Q 002877 659 LQNSEEYQVCAITVGVVGDVCRALDDK-VLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYV-PH 735 (872)
Q Consensus 659 l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~ 735 (872)
++..+ .+++..++++|+.+.....+. ...+. ...++.|++.|.++ +..++..++.+++.++..... -.... ..
T Consensus 660 Lss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~--d~~v~e~Al~ALanLl~~~e~-~~ei~~~~ 735 (2102)
T PLN03200 660 LTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS--SIEVAEQAVCALANLLSDPEV-AAEALAED 735 (2102)
T ss_pred HhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCchH-HHHHHhcC
Confidence 87654 458999999999998744322 12223 34788999999887 789999999999999875422 11111 34
Q ss_pred HHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhH--HHHHHHHHHHhcCCCCCHhHHH
Q 002877 736 ALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYA--QHLLQFIELIFKDNHRDENVTK 813 (872)
Q Consensus 736 i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~il~~l~~~~~~~~~~~~~~~ 813 (872)
.++.+...++.- ....|+.+..++..++..-... +.+..+. ...+..+..+++..+.+.....
T Consensus 736 ~I~~Lv~lLr~G-------------~~~~k~~Aa~AL~~L~~~~~~~--~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~ 800 (2102)
T PLN03200 736 IILPLTRVLREG-------------TLEGKRNAARALAQLLKHFPVD--DVLKDSVQCRGTVLALVDLLNSTDLDSSATS 800 (2102)
T ss_pred cHHHHHHHHHhC-------------ChHHHHHHHHHHHHHHhCCChh--HHHHHHHHHhCcHHHHHHHHhcCCcchhhHH
Confidence 456666665531 1256788777777776654321 1132333 2234455555555433333333
Q ss_pred HHHHHHHHHHhhhCcchh-hhcc-----CchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 002877 814 AAVAVMGDLADALGPNTK-LLFK-----DSSFCNDFMSECLRSDDEQLKETAGWTQGMINR 868 (872)
Q Consensus 814 ~a~~~l~~l~~~~~~~~~-~~~~-----~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 868 (872)
.++..+.-+.+.-+.... +..+ ...-+.+++.+ +..+.|.+++.|...+.++++
T Consensus 801 ~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~-l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 801 EALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRC-LAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHH-HHcCChHHHHHHHHHHHHHhc
Confidence 578888888875322211 0000 11125566664 789999999999999998875
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=3.6e-17 Score=193.40 Aligned_cols=725 Identities=13% Similarity=0.068 Sum_probs=445.9
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHH
Q 002877 39 LLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAK 118 (872)
Q Consensus 39 ~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~ 118 (872)
+..+++-|.+...+++.|..|..-|+.+.+...+.+ ..... ....-+.|+..|.+++..+|..++.++..
T Consensus 15 v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR-~~Ia~---------~aGaIP~LV~lL~sg~~~vk~nAaaaL~n 84 (2102)
T PLN03200 15 VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEAR-KAIGS---------HSQAMPLLVSLLRSGTLGAKVNAAAVLGV 84 (2102)
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHH-HHHHH---------ccCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444455433346667777777766654332111 10000 01234578888888899999999999988
Q ss_pred HHHhhcCCC--CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccc--hhhHHHHHHHHHhcccCCC-CCHH
Q 002877 119 IASIEIPQK--QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLV--QDEVNAVLTAVVQGMNLAE-HSAE 193 (872)
Q Consensus 119 i~~~~~p~~--~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~--~~~~~~l~~~l~~~l~~~~-~~~~ 193 (872)
+..++-... .-...++.|++.+++. ++..|+.|..+|..+...-..+... .-.....+|.+...+.+.. .+..
T Consensus 85 LS~~e~nk~~Iv~~GaIppLV~LL~sG--s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 85 LCKEEDLRVKVLLGGCIPPLLSLLKSG--SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HhcCHHHHHHHHHcCChHHHHHHHHCC--CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 886642110 1145788899999888 8899999999999887642101110 0112456777777777632 1234
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhc
Q 002877 194 VRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVK 272 (872)
Q Consensus 194 vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~ 272 (872)
++..++.+|.++...-.+ ........-.++.+...+.++++..+..++.++..++...++.....++ ..++.++..+.
T Consensus 163 L~~~Av~AL~nLs~~~en-~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~ 241 (2102)
T PLN03200 163 VEGLLTGALRNLCGSTDG-FWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLG 241 (2102)
T ss_pred HHHHHHHHHHHHhcCccc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc
Confidence 666677787776532111 1100000114567777788889999999999988887665443322222 35677777776
Q ss_pred C-CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHH-hhHHHHHHHHhcccCCcccCCCCcchhhhH
Q 002877 273 G-DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARS-SLVPMLLETLLKQEEDQDQDDSIWNISMAG 350 (872)
Q Consensus 273 ~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a 350 (872)
+ .+..++..|...+..++....+ ..+.... .-+|.++..+.....+-...+....++..|
T Consensus 242 sg~~~~VRE~AA~AL~nLAs~s~e------------------~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~A 303 (2102)
T PLN03200 242 QGNEVSVRAEAAGALEALSSQSKE------------------AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENA 303 (2102)
T ss_pred cCCChHHHHHHHHHHHHHhcCCHH------------------HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHH
Confidence 5 4568899999888888864221 1111111 356666666643322111111123567777
Q ss_pred HHHHHHHHhhcCCcchhchHHHHHhhccCC-CcchHHHHHHHHHHhhcCCC-ccchhHhH--HhHHHHHHHhcCCCcHHH
Q 002877 351 GTCLGLVARTVGDEVVPLVMPFVEANIVKS-DWRCREAATYAFGSVLEGPT-IDKLAPLV--HAGFDFLLNAMRDENNHV 426 (872)
Q Consensus 351 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~i~~~~~-~~~~~~~l--~~l~~~l~~~l~d~~~~v 426 (872)
..+|..++... +.+++++.+.+.+. +....-.++.++..+...+. +......+ ..+.+.|.+.+.+++|..
T Consensus 304 vwALsNIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~ 378 (2102)
T PLN03200 304 MGALANICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKL 378 (2102)
T ss_pred HHHHHHHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCch
Confidence 88888777543 45667776666543 22222244455555532221 01111112 245688889998877664
Q ss_pred -HHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh--H
Q 002877 427 -KDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY--L 502 (872)
Q Consensus 427 -r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~--~ 502 (872)
+..+..+|..+...... ...-.-....+.|+..+.. +..++..+++++..++++- ...... -
T Consensus 379 vqe~V~eALasl~gN~~l-------~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-------~e~~~aIi~ 444 (2102)
T PLN03200 379 VQERIIEALASLYGNAYL-------SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-------GGLWEALGG 444 (2102)
T ss_pred hHHHHHHHHHHhcCChHH-------HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-------HHHHHHHHH
Confidence 66666776443211100 0000112345567777776 8899999999999999662 111111 1
Q ss_pred HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHH
Q 002877 503 TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA-ELLPAIMGRLGQTLELQIVSSDDREKQGDLQAS 581 (872)
Q Consensus 503 ~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 581 (872)
...++.|+..+.+. +..++..+..+++.+..... +......+ ..+|.+.+.+.. ....++..
T Consensus 445 ~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s-------------~~~~iqee 507 (2102)
T PLN03200 445 REGVQLLISLLGLS---SEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLET-------------GSQKAKED 507 (2102)
T ss_pred cCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcC-------------CCHHHHHH
Confidence 23578888888743 35568899999999886544 33333333 578888887763 12457788
Q ss_pred HHHHHHHHHHHcCCCccchhhchhhH--HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhh
Q 002877 582 LCGVLQVIIQKFSSTDATKSFILQTA--DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGL 659 (872)
Q Consensus 582 ~~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 659 (872)
+++++.++... .. .....+ ...++.+++++++.+...++.+..++.+++...... .++.+...+
T Consensus 508 AawAL~NLa~~-~~------qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LL 573 (2102)
T PLN03200 508 SATVLWNLCCH-SE------DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TISQLTALL 573 (2102)
T ss_pred HHHHHHHHhCC-cH------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHh
Confidence 99999998752 11 233333 246778888999889999999999999997654332 224444445
Q ss_pred cccchHhHHHHHHHHHHHHHHHhcCC-cc-cc--HHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchh-hhHH
Q 002877 660 QNSEEYQVCAITVGVVGDVCRALDDK-VL-PF--CDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFE-KYVP 734 (872)
Q Consensus 660 ~~~~~~~v~~~a~~~l~~l~~~~~~~-~~-~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~ 734 (872)
.. +++.++..++..++.+....... +. .. ....++.|.++|.++ +..+|+.++.++++++..-.+... ....
T Consensus 574 ls-dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~a 650 (2102)
T PLN03200 574 LG-DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATD 650 (2102)
T ss_pred cC-CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 44 44568888899998886644321 11 00 135688999999988 789999999999999875544222 2234
Q ss_pred HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhH-HHHHHHHHHHhcCCCCCHhHHH
Q 002877 735 HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYA-QHLLQFIELIFKDNHRDENVTK 813 (872)
Q Consensus 735 ~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~il~~l~~~~~~~~~~~~~~~ 813 (872)
..+|++...+... ..+.+..+..++..+..+.... ....++ ..+++.+.+.+.+ .+.+++.
T Consensus 651 gaIpPLV~LLss~-------------~~~v~keAA~AL~nL~~~~~~~---q~~~~v~~GaV~pL~~LL~~--~d~~v~e 712 (2102)
T PLN03200 651 EIINPCIKLLTNN-------------TEAVATQSARALAALSRSIKEN---RKVSYAAEDAIKPLIKLAKS--SSIEVAE 712 (2102)
T ss_pred CCHHHHHHHHhcC-------------ChHHHHHHHHHHHHHHhCCCHH---HHHHHHHcCCHHHHHHHHhC--CChHHHH
Confidence 5566777665531 1245666677777777644332 122223 3367777777765 5689999
Q ss_pred HHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 002877 814 AAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMINR 868 (872)
Q Consensus 814 ~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 868 (872)
.++.+|..++....... .+...+.+..|++. +.+++++.|..|+||+..+++
T Consensus 713 ~Al~ALanLl~~~e~~~--ei~~~~~I~~Lv~l-Lr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 713 QAVCALANLLSDPEVAA--EALAEDIILPLTRV-LREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHHHHHHcCchHHH--HHHhcCcHHHHHHH-HHhCChHHHHHHHHHHHHHHh
Confidence 99999999988765432 24556779999986 999999999999999998875
No 24
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=4.6e-17 Score=180.68 Aligned_cols=626 Identities=16% Similarity=0.231 Sum_probs=385.6
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCC----CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHh
Q 002877 85 IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQ----KQWPELIRSLLNNMTQQDSLAALKQATLETLGYV 160 (872)
Q Consensus 85 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~----~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 160 (872)
........+.+.|...+.++++..|.+.+.-+=.++++.+.. ...+++...+...+.++ ++-..+.|...++-+
T Consensus 811 ~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~--dEf~QDvAsrGlglV 888 (1702)
T KOG0915|consen 811 VNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDN--DEFSQDVASRGLGLV 888 (1702)
T ss_pred cCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhccc--HHHHHHHHhcCceEE
Confidence 344445567777888888999999999998888888776521 25678888888888887 777788888888655
Q ss_pred hhccCccccchhhHHHHHHHHHhcccCCC---CCHHH-------------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 002877 161 CEEISHQDLVQDEVNAVLTAVVQGMNLAE---HSAEV-------------RLAATRALYNALDFALTNFQNEMERNYIMK 224 (872)
Q Consensus 161 ~~~~~~~~l~~~~~~~l~~~l~~~l~~~~---~~~~v-------------r~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 224 (872)
-+-- ...+...-.+.++..+..+=.... ...++ ..+.-+=|.++.. ++. .+.++-
T Consensus 889 Yelg-d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS----dl~----qPdLVY 959 (1702)
T KOG0915|consen 889 YELG-DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS----DLG----QPDLVY 959 (1702)
T ss_pred EecC-CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh----hcC----ChHHHH
Confidence 4433 222212233444444433111100 00000 1111122222111 111 122333
Q ss_pred HHHHhhc-CCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCC
Q 002877 225 VVCETAK-SKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPE 303 (872)
Q Consensus 225 ~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 303 (872)
.+.++.+ +-.+.-|+.|...|+.++......+.||++.++|-+.+.-.|++..++..-...|.+++....
T Consensus 960 KFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k--------- 1030 (1702)
T KOG0915|consen 960 KFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK--------- 1030 (1702)
T ss_pred HHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH---------
Confidence 3333333 335677899999999999999999999999999999988889999999888899999976532
Q ss_pred CCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcc
Q 002877 304 TGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWR 383 (872)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 383 (872)
..+..|+..|+.-|+ ..+.+..|+
T Consensus 1031 ---------~~vd~y~neIl~eLL-----------------------------------------------~~lt~kewR 1054 (1702)
T KOG0915|consen 1031 ---------KVVDEYLNEILDELL-----------------------------------------------VNLTSKEWR 1054 (1702)
T ss_pred ---------HHHHHHHHHHHHHHH-----------------------------------------------HhccchhHH
Confidence 233444443433332 223456799
Q ss_pred hHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHH---HHHHHHHhhccCCCCCccccCcccHHHHH
Q 002877 384 CREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTA---WTLSRIFELLHCPATGFSVISPENLQRIL 460 (872)
Q Consensus 384 ~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 460 (872)
+|++++.|+..+..+...+.+...+++++..+++.++|-...||.+|- .++++++-...+.. ......+.+..++
T Consensus 1055 VReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~--~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVT--NGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--CcccHHHHHHHHH
Confidence 999999999999988766778889999999999999999999999874 45555555554421 1123445666777
Q ss_pred HHHHH-Hhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhH----------HHHHH
Q 002877 461 TVLLE-SIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKL----------RSAAY 528 (872)
Q Consensus 461 ~~l~~-~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~v----------r~~a~ 528 (872)
|.|+. ++.+ -+.||..+...+..+++.. +..+.||++.++|.++......+ +..+ ...++
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kss------g~~lkP~~~~LIp~ll~~~s~lE--~~vLnYls~r~~~~e~eal 1204 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSS------GKELKPHFPKLIPLLLNAYSELE--PQVLNYLSLRLINIETEAL 1204 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhc------hhhhcchhhHHHHHHHHHccccc--hHHHHHHHHhhhhhHHHHH
Confidence 77663 3334 7889999999999999987 88999999999999999887433 2211 11222
Q ss_pred HHHH-HHHhcCC----CcccHHH-----HHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCcc
Q 002877 529 ETLN-EVVRCSN----ITETSQI-----IAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDA 598 (872)
Q Consensus 529 ~al~-~l~~~~~----~~~~~~~-----~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 598 (872)
+.+. ..++..| ++.+.+| +++++|.+.+.+...+.. ..+..+...+..++.+++.
T Consensus 1205 Dt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl------------~Tkvg~A~fI~~L~~r~~~--- 1269 (1702)
T KOG0915|consen 1205 DTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGL------------GTKVGCASFISLLVQRLGS--- 1269 (1702)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCC------------CcchhHHHHHHHHHHHhcc---
Confidence 2221 1222333 1223333 445556655555543211 1234566788888999999
Q ss_pred chhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh-HHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHH
Q 002877 599 TKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP-EFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGD 677 (872)
Q Consensus 599 ~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 677 (872)
.++||...++..++..+.+.++.++.....++|.++....+ ++..++..++..+..-. ++ .+..+|..+..
T Consensus 1270 ---emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~---es--~~siscatis~ 1341 (1702)
T KOG0915|consen 1270 ---EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKD---ES--LKSISCATISN 1341 (1702)
T ss_pred ---ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccC---CC--ccchhHHHHHH
Confidence 89999999999999999999999999989999999887665 66666666555544221 11 12344444444
Q ss_pred HHHHhcCCccccHHHHHHHH-----------------------------------------HHHhcCCCCCCCCchhHHH
Q 002877 678 VCRALDDKVLPFCDGIMSLL-----------------------------------------LNALSNSQLNRSVKPPILS 716 (872)
Q Consensus 678 l~~~~~~~~~~~~~~i~~~l-----------------------------------------~~~l~~~~~~~~~~~~~~~ 716 (872)
|+....+.+..|...|+|.+ +....+++ .+.+|..++.
T Consensus 1342 Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~-~w~lr~q~Ak 1420 (1702)
T KOG0915|consen 1342 IANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNE-SWKLRKQAAK 1420 (1702)
T ss_pred HHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccch-HHHHHHHHHH
Confidence 44444444444444444433 22222221 3455555555
Q ss_pred HHHHHHHhhccchh-hhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHH
Q 002877 717 CFGDIALAIGVHFE-KYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLL 795 (872)
Q Consensus 717 ~l~~l~~~~~~~~~-~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il 795 (872)
++..++........ +++-.+.+.+...+.. ..++-++..+.++...+..........+..|....+
T Consensus 1421 ai~~~a~~~sss~~~p~ilkl~~~ll~~L~G-------------RiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~ 1487 (1702)
T KOG0915|consen 1421 AIRVIAEGLSSSAPIPVILKLALSLLDTLNG-------------RIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVM 1487 (1702)
T ss_pred HHHHHcccccccCChHHHHHHHHHHHHHhhc-------------cccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHH
Confidence 55555554433322 4555555555555432 223344445555555444443332222333333333
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchH
Q 002877 796 QFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSF 839 (872)
Q Consensus 796 ~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 839 (872)
+-. +. .+...+..+..+.+....+........++...|
T Consensus 1488 ~e~----sr--~~~~y~~~ala~~~~~lda~~~e~~~~~~~~~~ 1525 (1702)
T KOG0915|consen 1488 EEV----SR--REAKYKIMALAGAGLALDATKAERFEEVENAVW 1525 (1702)
T ss_pred HHH----HH--HHhHHHHHHHhhhHHHHhhhhhhhHHHHHHHHH
Confidence 333 22 345666677788888888777776655555544
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=3e-17 Score=182.06 Aligned_cols=561 Identities=18% Similarity=0.221 Sum_probs=362.2
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhh--hHHhHHHHHHHHHHHhcCCC---hHHHHHHHHhHhHHhHhhhh
Q 002877 221 YIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEV--LEPYMQTLFELTSNAVKGDE---EAVALQAVEFWSSICDEEIE 295 (872)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~l~~~~~~~~~~~~---~~~~~~al~~l~~l~~~~~~ 295 (872)
.+.+.+.....+++++.|+++|-.+..++...... ..-+.+++..-+...+.+.+ .+++...+.....+++..
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~-- 895 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS-- 895 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch--
Confidence 47777888888999999999999999998876532 22334455544445555543 345555555555555531
Q ss_pred hhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhccc-------CCcc-cCCCCc--ch---hhhHHHHHHHHHhhcC
Q 002877 296 LQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQE-------EDQD-QDDSIW--NI---SMAGGTCLGLVARTVG 362 (872)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~-------~d~~-~d~~~~--~~---r~~a~~~l~~l~~~~~ 362 (872)
.-+ .++.-|+..++... +|.+ -.++.. ++ .....+-|-.++...|
T Consensus 896 ------------------~k~----~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~ 953 (1702)
T KOG0915|consen 896 ------------------LKK----SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG 953 (1702)
T ss_pred ------------------hHH----HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC
Confidence 123 23344444443211 1111 000000 01 1122333445555554
Q ss_pred CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhcc
Q 002877 363 DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 363 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
+. ..+..|..-.-.+.-|.-|.+|.+.++.++...+ +++.||+++++|.+.+.--||++.|+.+.....+.+..--.
T Consensus 954 qP--dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~-~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k 1030 (1702)
T KOG0915|consen 954 QP--DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAG-EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK 1030 (1702)
T ss_pred Ch--HHHHHHHHHhhhhchhhcccchhhchHHHHHHHH-HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH
Confidence 22 1223443333234569999999999999998885 88999999999999999999999999999888888765433
Q ss_pred CCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcch
Q 002877 443 CPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGS 521 (872)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~ 521 (872)
. ....|+..+++.|+..+.+ .++||+++|.|+..+...-. .+.+...++.++..++.... |-. .
T Consensus 1031 ~-------~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~-----~~~~~e~lpelw~~~fRvmD--DIK-E 1095 (1702)
T KOG0915|consen 1031 K-------VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP-----FDQVKEKLPELWEAAFRVMD--DIK-E 1095 (1702)
T ss_pred H-------HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHHHHHHH--HHH-H
Confidence 3 4568999999999999999 99999999999999998642 44455667777777777665 322 3
Q ss_pred hHHHHHHHHHHHHHhc---CC----CcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcC
Q 002877 522 KLRSAAYETLNEVVRC---SN----ITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFS 594 (872)
Q Consensus 522 ~vr~~a~~al~~l~~~---~~----~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 594 (872)
.||.++-.+...+.+- .. ...-.+.+..++|.+++. ..-....++|...+.++..+++..|
T Consensus 1096 sVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~------------gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1096 SVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDE------------GIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhcc------------CcccchHHHHHHHHHHHHHHHHhch
Confidence 3577665555444332 22 123456777777777541 1113456788899999999999999
Q ss_pred CCccchhhchhhHHHHHHHHHHHHccCChhH-----------HHHHHHHHH-HHHHHhh-----hHHHhh-----hHHHH
Q 002877 595 STDATKSFILQTADQIMVLFLRVFACRSSTV-----------HEEAMLAIG-ALAYATG-----PEFAKY-----MPEFY 652 (872)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v-----------~~~a~~~l~-~l~~~~~-----~~~~~~-----l~~i~ 652 (872)
. .++||++.+++.++.....-.+.+ ...++.... +.++..+ ....+| +++++
T Consensus 1164 ~------~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeeli 1237 (1702)
T KOG0915|consen 1164 K------ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELI 1237 (1702)
T ss_pred h------hhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHH
Confidence 9 999999999999999887654332 112222221 1111111 112223 34778
Q ss_pred HHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhcc-chhh
Q 002877 653 QYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGV-HFEK 731 (872)
Q Consensus 653 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~ 731 (872)
|.+.+.++.+=....+..+..++..++..++.++.||...++..++..+.+. +..++.....++|.++....+ ++..
T Consensus 1238 p~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR--Nesv~kafAsAmG~L~k~Ss~dq~qK 1315 (1702)
T KOG0915|consen 1238 PRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR--NESVRKAFASAMGYLAKFSSPDQMQK 1315 (1702)
T ss_pred HHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccc--cHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888887765555578888889999999999999999999999999999987 889999999999999998654 6777
Q ss_pred hHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhH
Q 002877 732 YVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENV 811 (872)
Q Consensus 732 ~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 811 (872)
++..++..++.-. +..+...+..... +..+..+.+..|...|++.+.-.. +++
T Consensus 1316 Lie~~l~~~l~k~-----------------es~~siscatis~----Ian~s~e~Lkn~asaILPLiFLa~-----~ee- 1368 (1702)
T KOG0915|consen 1316 LIETLLADLLGKD-----------------ESLKSISCATISN----IANYSQEMLKNYASAILPLIFLAM-----HEE- 1368 (1702)
T ss_pred HHHHHHHHHhccC-----------------CCccchhHHHHHH----HHHhhHHHHHhhHHHHHHHHHHHH-----hHH-
Confidence 7776655554320 1122222333322 444456678899999999876442 122
Q ss_pred HHHHHHHHHHHHhhhCcchhhhc--cCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 002877 812 TKAAVAVMGDLADALGPNTKLLF--KDSSFCNDFMSECLRSDDEQLKETAGWTQGMINRVL 870 (872)
Q Consensus 812 ~~~a~~~l~~l~~~~~~~~~~~~--~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 870 (872)
-+.-..+-.++-..+-+...+.. +...++..+......+...++|..++-++..++.-+
T Consensus 1369 ~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1369 EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccc
Confidence 22334444444333322211111 333455555555666677888888887777666543
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.83 E-value=2.5e-16 Score=158.75 Aligned_cols=613 Identities=13% Similarity=0.110 Sum_probs=381.3
Q ss_pred CCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHH
Q 002877 103 SPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVV 182 (872)
Q Consensus 103 ~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~ 182 (872)
+.++.||+..+.+.+.++.+. .-++++|.|-..+.|.. ++..|+.++.+.+++|+-++.. . ..|+..++..+.
T Consensus 292 ~~deYVRnvt~ra~~vva~al----gv~~llpfl~a~c~Srk-Sw~aRhTgiri~qqI~~llG~s-~-l~hl~~l~~ci~ 364 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADAL----GVEELLPFLEALCGSRK-SWEARHTGIRIAQQICELLGRS-R-LSHLGPLLKCIS 364 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHHHhcCcc-chhhhchhhHHHHHHHHHhCcc-H-HhhhhhHHHHHH
Confidence 457999999999999999886 56788999988888752 6789999999999999988533 3 578999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh-hhhhhHHhHH
Q 002877 183 QGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAST-YYEVLEPYMQ 261 (872)
Q Consensus 183 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~ 261 (872)
+++.| .+-.||..+..++..+.+.... +..+. .+.++.-+.+..+..-......-+...+.++.. .|++..-+-.
T Consensus 365 ~~l~D--~~~~vRi~tA~alS~lae~~~P-ygie~-fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tr 440 (975)
T COG5181 365 KLLKD--RSRFVRIDTANALSYLAELVGP-YGIEQ-FDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTR 440 (975)
T ss_pred HHhhc--cceeeeehhHhHHHHHHHhcCC-cchHH-HHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHH
Confidence 99999 5678998888888887664332 11111 122444444444322222222222222222211 1233333334
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcc--------
Q 002877 262 TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQ-------- 333 (872)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~-------- 333 (872)
.....+.+.+.+++++.....+-+.......... . +.+ +..++.|.+++.....
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~-t--------------p~~---lr~~v~pefF~~fw~rr~A~dr~~ 502 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVERICDKVGTD-T--------------PWK---LRDQVSPEFFSPFWRRRSAGDRRS 502 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHHHHHhccCCC-C--------------HHH---HHHhhcHHhhchHHHhhhcccccc
Confidence 5666777777888877776655544333222110 0 011 1123333333222110
Q ss_pred --------------cCC---------cccCCCCcchhhhHHHHHHHHHhhcCC-----cchhchHHHHHhhccCCCcchH
Q 002877 334 --------------EED---------QDQDDSIWNISMAGGTCLGLVARTVGD-----EVVPLVMPFVEANIVKSDWRCR 385 (872)
Q Consensus 334 --------------~~d---------~~~d~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~r 385 (872)
..+ .-.|+ .--.|+.++.+..++....|. .....++..+...++.++-.+
T Consensus 503 ~k~v~~ttvilAk~~g~~~v~~kil~~~~De-~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~- 580 (975)
T COG5181 503 YKQVVLTTVILAKMGGDPRVSRKILEYYSDE-PEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV- 580 (975)
T ss_pred cceeehhHHHHHHHcCChHHHHHHHhhccCC-cchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-
Confidence 000 00111 123455556666666555541 122222333322222221110
Q ss_pred HHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHH
Q 002877 386 EAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLE 465 (872)
Q Consensus 386 ~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 465 (872)
...+-+++.+..... --.+++++.++..++..|.++.|.||..|+.+.+.++..++. ......+..+=..|.+
T Consensus 581 ~~il~~f~tv~vsl~-~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~------c~e~~~l~klg~iLyE 653 (975)
T COG5181 581 GLILPCFSTVLVSLE-FRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKA------CGETKELAKLGNILYE 653 (975)
T ss_pred cEEEecccceeeehh-hccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh------cchHHHHHHHhHHHHH
Confidence 011123333332221 235678999999999999999999999999999999887774 1223445555556667
Q ss_pred Hhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccH
Q 002877 466 SIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETS 544 (872)
Q Consensus 466 ~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~ 544 (872)
.+.. .|.|-.....|+..+....+ -..+.|-+.+|+|.+...+.+ ...++.......++.+....+ +...
T Consensus 654 ~lge~ypEvLgsil~Ai~~I~sv~~-----~~~mqpPi~~ilP~ltPILrn---kh~Kv~~nti~lvg~I~~~~p-eyi~ 724 (975)
T COG5181 654 NLGEDYPEVLGSILKAICSIYSVHR-----FRSMQPPISGILPSLTPILRN---KHQKVVANTIALVGTICMNSP-EYIG 724 (975)
T ss_pred hcCcccHHHHHHHHHHHHHHhhhhc-----ccccCCchhhccccccHhhhh---hhHHHhhhHHHHHHHHHhcCc-ccCC
Confidence 7876 88888777777777776654 566788899999999999973 345667788888888888777 4221
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChh
Q 002877 545 QIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSST 624 (872)
Q Consensus 545 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 624 (872)
..+.|-..++.+... +....++|..+..+++.|.+.+|+ +.++..|+.-|+..+..
T Consensus 725 --~rEWMRIcfeLvd~L----------ks~nKeiRR~A~~tfG~Is~aiGP------------qdvL~~LlnnLkvqeRq 780 (975)
T COG5181 725 --VREWMRICFELVDSL----------KSWNKEIRRNATETFGCISRAIGP------------QDVLDILLNNLKVQERQ 780 (975)
T ss_pred --HHHHHHHHHHHHHHH----------HHhhHHHHHhhhhhhhhHHhhcCH------------HHHHHHHHhcchHHHHH
Confidence 112232222222221 123356788899999999999988 46777777777766555
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCC
Q 002877 625 VHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 625 v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 704 (872)
.|-..-.+++.+++.++.. .++|.|+......+ ..|++..+.++..+...+|+.-..|+-.+.|.|-+.|.+.
T Consensus 781 ~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TPe-~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr 853 (975)
T COG5181 781 QRVCTSVAISIVAEYCGPF------SVLPTLMSDYETPE-ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR 853 (975)
T ss_pred hhhhhhhhhhhhHhhcCch------hhHHHHHhcccCch-hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc
Confidence 6666666778887777642 57888877665543 3488999999999999899888899999999999999988
Q ss_pred CCCCCCchhHHHHHHHHHHhhc-----cchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhcc
Q 002877 705 QLNRSVKPPILSCFGDIALAIG-----VHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGF 779 (872)
Q Consensus 705 ~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l 779 (872)
+..-|..+.+.+..++..++ +.+...+..+.|-+++. ...+.....+++-++..++
T Consensus 854 --D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~-----------------sPhvi~~~~Eg~e~~~~~l 914 (975)
T COG5181 854 --DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEP-----------------SPHVIQSFDEGMESFATVL 914 (975)
T ss_pred --chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCC-----------------CcHHHHHHHHHHHHHHHHh
Confidence 78888999999999987753 22334444444444432 1234444555666777766
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHh
Q 002877 780 KSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLAD 824 (872)
Q Consensus 780 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~ 824 (872)
+.. .+..| +.+.+ ..+...+|+.-.......-.
T Consensus 915 g~g---~~m~Y---v~qGL------FHPs~~VRk~ywtvyn~myv 947 (975)
T COG5181 915 GSG---AMMKY---VQQGL------FHPSSTVRKRYWTVYNIMYV 947 (975)
T ss_pred ccH---HHHHH---HHHhc------cCchHHHHHHHHHHHhhhhh
Confidence 531 13233 33333 23568889887777665443
No 27
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.81 E-value=5.4e-15 Score=157.11 Aligned_cols=578 Identities=14% Similarity=0.118 Sum_probs=310.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhc
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLA 84 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~ 84 (872)
++..+...+|+|+..++.||+.|+++.++ ++|...|..+..+.+.+-++|..|.+.+||.+++.|+.. .-..
T Consensus 6 vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q--~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~------~~~~ 77 (947)
T COG5657 6 VVKQLDLAQSPDPPSVKCAEERLRQWEKQ--HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREE------NGNS 77 (947)
T ss_pred HHHHHHhhcCCCCchHhhHHHHHHhhhcc--ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhh------cccC
Confidence 44566888999999999999999999999 899999999998877789999999999999999999742 2245
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhcc
Q 002877 85 IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEI 164 (872)
Q Consensus 85 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 164 (872)
+.++....||..++..+.+.+..+..+.|.+++.||+.++|. .||.+++.+...+++. +-..-.+.+.++..+++.+
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPd-eWpTL~~DL~~~Ls~~--D~~tn~~~L~~~h~Ifk~~ 154 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPD-EWPTLVPDLLSLLSEK--DMVTNENSLRVLHHIFKRL 154 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcc-cchhHHHHHHhhhccc--chHHHHHHHHHHHHHHHHH
Confidence 777777799999999999888888889999999999999995 9999999999999986 5556677888888888877
Q ss_pred Cc-----cccchhhHHHHHHHHHhcccCCCCCHHH----HHHHHHHHHHHHHHHH----hhhhh-----hhHHHHHHHHH
Q 002877 165 SH-----QDLVQDEVNAVLTAVVQGMNLAEHSAEV----RLAATRALYNALDFAL----TNFQN-----EMERNYIMKVV 226 (872)
Q Consensus 165 ~~-----~~l~~~~~~~l~~~l~~~l~~~~~~~~v----r~~al~~l~~~~~~~~----~~~~~-----~~~~~~ll~~l 226 (872)
.+ +.+ ....+.+.+.+.+.+...-+.+.. ....+..+..++..++ -+++. ++..+..+...
T Consensus 155 r~l~Rsd~lf-~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F 233 (947)
T COG5657 155 RRLFRSDALF-LEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHF 233 (947)
T ss_pred hhhhccHHHH-HHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 42 122 222333333333333221111111 1222222222222111 11110 00111223333
Q ss_pred HHhhcCCcH-------------HHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCC-----ChHHHHHHHHhHhH
Q 002877 227 CETAKSKEV-------------EIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGD-----EEAVALQAVEFWSS 288 (872)
Q Consensus 227 ~~~~~~~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~al~~l~~ 288 (872)
...+.-..+ .++...++.+..+...+|..+.+++-++++.+.+.+++- -+-+...++.++..
T Consensus 234 ~klls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~ 313 (947)
T COG5657 234 CKLLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLIN 313 (947)
T ss_pred HHHHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHH
Confidence 333221111 223446777777777888888877767776665554431 22344455666555
Q ss_pred HhHhhhhhhhhcCCCCCCCCCCchHHHH----HhHHhhHHHHHHHH-hcccCCcc---cC-----------CCCcchhhh
Q 002877 289 ICDEEIELQEFENPETGDSDSPNYHFIE----KARSSLVPMLLETL-LKQEEDQD---QD-----------DSIWNISMA 349 (872)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~l~~~l-~~~~~d~~---~d-----------~~~~~~r~~ 349 (872)
+.+... ++...+.. .....++..++..- .-.++|.+ +| +-..++|..
T Consensus 314 v~k~~i--------------rk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~ 379 (947)
T COG5657 314 VIKYPI--------------RKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPC 379 (947)
T ss_pred hhcccc--------------HHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHH
Confidence 554211 00011111 12223333333221 11222211 11 112466778
Q ss_pred HHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcC-CCccchhHhHHhHHHHHHH----hcCC---
Q 002877 350 GGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEG-PTIDKLAPLVHAGFDFLLN----AMRD--- 421 (872)
Q Consensus 350 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~-~~~~~~~~~l~~l~~~l~~----~l~d--- 421 (872)
+...++.....+++-+.+++...+.+....++ ....+......++.. .+...+. ++-..+..+.+ .+.+
T Consensus 380 ~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~--~~d~~~~~~a~~a~~g~g~~av~-~~~~~v~~~~~~~~pd~~s~~~ 456 (947)
T COG5657 380 IENELKDLFDVFGRIAVGHELTVIESEATTPN--ILDEARQLFAAYASFGLGVEAVN-RMVDFVKFLGSIIYPDLLSPNE 456 (947)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHhcCccccCccc
Confidence 88888888887886677788888888777662 222222222222211 1111111 11111111111 1222
Q ss_pred -CcHHHHHH-HHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCch
Q 002877 422 -ENNHVKDT-TAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLS 499 (872)
Q Consensus 422 -~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~ 499 (872)
.+.+++.. +...+..-......+ ......+..+.+...+.... +..+-.....+..++.+... ..+....
T Consensus 457 ~~~~ri~~~~i~~i~~~r~~l~~~~----~~~~~fl~~~~F~~yt~~~i-d~~~lLT~~~a~~t~~~~~n---~~~~~~~ 528 (947)
T COG5657 457 IIHLRILRSRIAYILTFRNQLDSSE----LSESKFLASQFFVNYTTACI-DAVVLLTTREAYSTIFDDWN---FSVCSKI 528 (947)
T ss_pred CceeEEehhccchheechhhhhhhh----hhhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcc---ccccccc
Confidence 22333222 222211111000000 00000111111222222111 22222222233333333321 1122333
Q ss_pred hhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHH
Q 002877 500 PYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQ 579 (872)
Q Consensus 500 ~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 579 (872)
.-.++++-.++......+. ..-|....++++.++...+ +...|...++++.+.+.+....+++ . ...+.
T Consensus 529 ~~lenl~~lvl~~~as~~~--~~e~~~ll~~i~rii~~~~-~~i~pl~~~il~~L~~lv~~~~knp-------s-~p~~~ 597 (947)
T COG5657 529 GLLENLILLVLSLMASPSS--LEEREFLLQLISRIIIIDP-ELIAPLGSEILQLLDNLVEINAKNP-------S-NPQFA 597 (947)
T ss_pred ccHHHHHHHHHHhcCCcch--hHHHHHHHHHHHHHHHhCH-HhhhhhHHHHHHHHHHHHHHHccCC-------c-cHHHH
Confidence 4456666666666654443 2338899999999999888 7777777778877777776543221 1 11133
Q ss_pred HHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHH-HHHHHHHHHHHHHh
Q 002877 580 ASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVH-EEAMLAIGALAYAT 640 (872)
Q Consensus 580 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~-~~a~~~l~~l~~~~ 640 (872)
......+++++..... ..+..++.+...+....+.+- +.+...++.+....
T Consensus 598 h~~fe~I~al~~~~~~----------~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~ 649 (947)
T COG5657 598 HYTFEDIGALVFLKSG----------MCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLL 649 (947)
T ss_pred HHHHHHHHHHHHhhhc----------ccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHH
Confidence 3444555555444333 234455666666655533333 66666666654443
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.5e-15 Score=156.15 Aligned_cols=516 Identities=13% Similarity=0.162 Sum_probs=343.0
Q ss_pred CCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHH
Q 002877 103 SPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVV 182 (872)
Q Consensus 103 ~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~ 182 (872)
++...+|.....+...+....+- +.-.++.|-.-+.+.+.. +...|++.....+.+...... . ......++..++
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~~-~~v~~l~~~~~~~l~~~~-~~~~~~~~~v~~~~~a~~~~~--~-d~~~~~~~~~~~ 102 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHGD-QNVLNLKPCFEQRLNSLH-NDNLRNNVVVLEGTLAFHLQI--V-DPRPISIIEILL 102 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhhH-HHHHHHHHHHHHHhccch-hHHHhhhhHHHHHHHHHhccc--c-CcchhHHHHHHH
Confidence 45566776665555555433311 134567777778887752 556777777777666665421 1 334555666777
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhh-hHHhHH
Q 002877 183 QGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEV-LEPYMQ 261 (872)
Q Consensus 183 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~ 261 (872)
..+.. ++..+|.+...|+..+....... ....++..+.+++.......+..+...+..++..+.-. +.++
T Consensus 103 ~~~~t--ps~~~q~~~~~~l~~~~~~~~~~-----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~-- 173 (569)
T KOG1242|consen 103 EELDT--PSKSVQRAVSTCLPPLVVLSKGL-----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEF-- 173 (569)
T ss_pred HhcCC--CcHHHHHHHHHHhhhHHHHhhcc-----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhh--
Confidence 77776 89999999999999876543321 12346666677776666777777777777776654321 1111
Q ss_pred HHHHHHHHHhcCCChHHHH--HHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCccc
Q 002877 262 TLFELTSNAVKGDEEAVAL--QAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQ 339 (872)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~--~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 339 (872)
.++.-+.....+.....+. ..+.|. ..+.. . ....++|+..++|.++....+..
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~-~~~~~-L-----------------g~~~EPyiv~~lp~il~~~~d~~----- 229 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFE-AAQGN-L-----------------GPPFEPYIVPILPSILTNFGDKI----- 229 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHH-HHHHh-c-----------------CCCCCchHHhhHHHHHHHhhccc-----
Confidence 2333333444443322222 112111 11111 0 01235677778888887765322
Q ss_pred CCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc
Q 002877 340 DDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM 419 (872)
Q Consensus 340 d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l 419 (872)
..+|.++..+.+.+...++..-.+.++|-+...+....|+.+.+++..+|.+++.. ++.+...++.++|.+.+.|
T Consensus 230 ----~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 230 ----NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred ----hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHH
Confidence 57999999999999999987666666666555555558999999999999998877 5889999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 002877 420 RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLL 498 (872)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (872)
.|.+|.||.++..++-+++....+ +-+..++|.|+.++.| ...+. .+...++. ..+ ....-
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN----------~dI~~~ip~Lld~l~dp~~~~~-e~~~~L~~--ttF-----V~~V~ 366 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDN----------PDIQKIIPTLLDALADPSCYTP-ECLDSLGA--TTF-----VAEVD 366 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhcCcccchH-HHHHhhcc--eee-----eeeec
Confidence 999999999999999999988776 3488899999999997 32332 22332221 111 01222
Q ss_pred hhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHH
Q 002877 499 SPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDL 578 (872)
Q Consensus 499 ~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 578 (872)
.|-+.-|+|.+...+..-+ ...++.+
T Consensus 367 ~psLalmvpiL~R~l~eRs---t~~kr~t--------------------------------------------------- 392 (569)
T KOG1242|consen 367 APSLALMVPILKRGLAERS---TSIKRKT--------------------------------------------------- 392 (569)
T ss_pred chhHHHHHHHHHHHHhhcc---chhhhhH---------------------------------------------------
Confidence 3556667777766665221 2222222
Q ss_pred HHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhh
Q 002877 579 QASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMG 658 (872)
Q Consensus 579 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 658 (872)
+..+++++.-..+. ..+.||++.+++.+-..+.+..+++|..+..+++.+.+..+.. +++...|.+...
T Consensus 393 ----~~IidNm~~LveDp----~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 393 ----AIIIDNMCKLVEDP----KDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDLIPELSET 461 (569)
T ss_pred ----HHHHHHHHHhhcCH----HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cccccccHHHHh
Confidence 33334444433221 1688899999999999999999999999999999998888763 227788888877
Q ss_pred hcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHH
Q 002877 659 LQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQ 738 (872)
Q Consensus 659 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~ 738 (872)
+.+.....-+..+...++......+ ..+...+++.+.........++.++...+..+.-+-...|..+.+|+..+++
T Consensus 462 ~~~~k~~~~~~g~aq~l~evl~~~~---v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~ 538 (569)
T KOG1242|consen 462 LTSEKSLVDRSGAAQDLSEVLAGLG---VEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILD 538 (569)
T ss_pred hccchhhhhhHHHhhhHHHHHhccc---chHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHH
Confidence 7664433345566666666666555 3455666777766665554466688888888888888889999999999999
Q ss_pred HHHHHHHhc
Q 002877 739 MMQEAAKAC 747 (872)
Q Consensus 739 ~l~~~~~~~ 747 (872)
.+++.+...
T Consensus 539 ~~~k~~ad~ 547 (569)
T KOG1242|consen 539 EFLKGLADN 547 (569)
T ss_pred HHHHHhhhc
Confidence 999987753
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.9e-15 Score=155.38 Aligned_cols=527 Identities=16% Similarity=0.180 Sum_probs=352.6
Q ss_pred cCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCC
Q 002877 231 KSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSP 310 (872)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 310 (872)
.++...++...++.....+..++.....++..++...++... ++.++....-+-+.++.+-..
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~--~~~~~~~~~v~~~~~a~~~~~--------------- 89 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH--NDNLRNNVVVLEGTLAFHLQI--------------- 89 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--hHHHhhhhHHHHHHHHHhccc---------------
Confidence 567788888888888888887776665555555554443333 555665555555555543110
Q ss_pred chHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHH
Q 002877 311 NYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATY 390 (872)
Q Consensus 311 ~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~ 390 (872)
..+-.-.++..++..+..+ +-+++.+...|+..+.......-...+.+.+.+.+.......|..+..
T Consensus 90 ----~d~~~~~~~~~~~~~~~tp---------s~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 90 ----VDPRPISIIEILLEELDTP---------SKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred ----cCcchhHHHHHHHHhcCCC---------cHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 0000112333444333221 246788888898888877766666777888888888878888888988
Q ss_pred HHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHH-HHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc
Q 002877 391 AFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKD-TTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD 469 (872)
Q Consensus 391 ~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~-~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d 469 (872)
.+..+..+..-..+.+ ..++..+.....|.+...+. .+..+...+...++. ...+|+-++++.++.++.|
T Consensus 157 ~~ag~v~g~~i~~~~~--~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-------~~EPyiv~~lp~il~~~~d 227 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKE--FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-------PFEPYIVPILPSILTNFGD 227 (569)
T ss_pred HHHHHHcCcHHhhhhh--hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-------CCCchHHhhHHHHHHHhhc
Confidence 8888887654222222 15667777778887665444 677777777777775 5678999999999999999
Q ss_pred -ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH
Q 002877 470 -APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA 548 (872)
Q Consensus 470 -~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 548 (872)
.+.||.+|..+...+...+. +..+...++..+..+....+ .-+.++++.++.++.+.+ ......+.
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~-----~~aVK~llpsll~~l~~~kW-------rtK~aslellg~m~~~ap-~qLs~~lp 294 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLS-----AYAVKLLLPSLLGSLLEAKW-------RTKMASLELLGAMADCAP-KQLSLCLP 294 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcC-----cchhhHhhhhhHHHHHHHhh-------hhHHHHHHHHHHHHHhch-HHHHHHHh
Confidence 99999999999999988874 55566666666666665522 237899999999999999 77778888
Q ss_pred HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHH
Q 002877 549 ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEE 628 (872)
Q Consensus 549 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~ 628 (872)
.++|.+.+.+++ ...++|.....++..+...+.. +.+..+++.+++++.++..++.+.
T Consensus 295 ~iiP~lsevl~D-------------T~~evr~a~~~~l~~~~svidN---------~dI~~~ip~Lld~l~dp~~~~~e~ 352 (569)
T KOG1242|consen 295 DLIPVLSEVLWD-------------TKPEVRKAGIETLLKFGSVIDN---------PDIQKIIPTLLDALADPSCYTPEC 352 (569)
T ss_pred HhhHHHHHHHcc-------------CCHHHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHHHHhcCcccchHHH
Confidence 888888888874 3467888888888888766655 346778899999999886566443
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHh--cCCccccHHHHHHHHHHHhcCCCC
Q 002877 629 AMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL--DDKVLPFCDGIMSLLLNALSNSQL 706 (872)
Q Consensus 629 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~~~ 706 (872)
+..++..... ..--.|-+.-++|.+.+.+.... .+.+..++..+++++.-. +..+.||++.++|.+-..+.++
T Consensus 353 -~~~L~~ttFV-~~V~~psLalmvpiL~R~l~eRs-t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-- 427 (569)
T KOG1242|consen 353 -LDSLGATTFV-AEVDAPSLALMVPILKRGLAERS-TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-- 427 (569)
T ss_pred -HHhhcceeee-eeecchhHHHHHHHHHHHHhhcc-chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC--
Confidence 4444332111 11113667789999999887654 347788888999999888 4679999999999999999888
Q ss_pred CCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhh
Q 002877 707 NRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEV 786 (872)
Q Consensus 707 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 786 (872)
.+++|..+..++|.+....|+.-. +...|.+......+.. ...|......+...+..++
T Consensus 428 ~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~------------~~~~~g~aq~l~evl~~~~------ 486 (569)
T KOG1242|consen 428 VPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKS------------LVDRSGAAQDLSEVLAGLG------ 486 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchh------------hhhhHHHhhhHHHHHhccc------
Confidence 899999999999999998886432 6666666665432110 0122333333333444333
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHH
Q 002877 787 MMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGW 861 (872)
Q Consensus 787 ~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~ 861 (872)
..+...++..+....+....++.++..-+.++.-+-...|... +.+...+++++++. +.|.++..+..+.-
T Consensus 487 -v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~--~~yi~~i~~~~~k~-~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 487 -VEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQF--QPYIHEILDEFLKG-LADNDEKGRDTALE 557 (569)
T ss_pred -chHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHh--HHHHHHHHHHHHHH-hhhcCCccccchhh
Confidence 2333344433332222222445566544444444333334321 24556677888886 66888888776653
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=8.9e-16 Score=153.77 Aligned_cols=386 Identities=12% Similarity=0.102 Sum_probs=292.4
Q ss_pred cchhhhHHHHHHHHHhhcC-----CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh
Q 002877 344 WNISMAGGTCLGLVARTVG-----DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA 418 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~ 418 (872)
+.-|++|+.-+..+.+.+- +++-..+-....++..+++...|.+++.++++.+-+.+.+... |+..+++.++.+
T Consensus 14 YekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~~c 92 (675)
T KOG0212|consen 14 YEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVLNC 92 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHHHh
Confidence 5668888888888877652 1222233335667778888778889999999988887744444 999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCC
Q 002877 419 MRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSL 497 (872)
Q Consensus 419 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (872)
+.|++.+||..||..+-++++.... ....|++.++..+.+...| +..|+..| ..+..+.+.... +..
T Consensus 93 f~D~d~~vRyyACEsLYNiaKv~k~-------~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVt----e~~ 160 (675)
T KOG0212|consen 93 FSDQDSQVRYYACESLYNIAKVAKG-------EVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVT----ESA 160 (675)
T ss_pred ccCccceeeeHhHHHHHHHHHHhcc-------CcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcc----ccc
Confidence 9999999999999999999998887 5667999999999999998 78886554 557777766521 222
Q ss_pred chhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHH
Q 002877 498 LSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGD 577 (872)
Q Consensus 498 l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 577 (872)
-+-.++.++|.+-..+... +...|....+++..+-..-+ -++..|++.+++.++..+.. ...+
T Consensus 161 ~tFsL~~~ipLL~eriy~~---n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD-------------~s~e 223 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVI---NPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSD-------------SSDE 223 (675)
T ss_pred cccCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcC-------------CcHH
Confidence 2446788899888888643 34559999999999888777 78899999999999998874 2344
Q ss_pred HHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHh
Q 002877 578 LQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQM 657 (872)
Q Consensus 578 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 657 (872)
+|...-.+++.+...+..++ . .+ ..++.++.++..+.++++.++..|+..+..++...|..+.+|+..++..++.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P--~-s~--d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSP--S-SM--DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILP 298 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCc--c-cc--CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhccc
Confidence 55444556666666665421 0 11 3467888899999999999999999999999999999999999999999999
Q ss_pred hhcccchHhHHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHH
Q 002877 658 GLQNSEEYQVCAITVGVVGDVCRALDDKV---LPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVP 734 (872)
Q Consensus 658 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~---~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 734 (872)
++.+.+....+..+...-+.+..-++... .--...+++.+.+.+.++ ..+.|..++..+..+-...|.++..+.+
T Consensus 299 c~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~ 376 (675)
T KOG0212|consen 299 CLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHND 376 (675)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhcc
Confidence 99887654455555444444443332111 123458899999999887 7788999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhcc
Q 002877 735 HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGF 779 (872)
Q Consensus 735 ~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l 779 (872)
.+++.++..+... .+++-...+..+.+++.+-
T Consensus 377 ~if~tLL~tLsd~-------------sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 377 SIFLTLLKTLSDR-------------SDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHhhcCc-------------hhHHHHHHHHHHHHHhcCc
Confidence 9999999986642 2244455566666666654
No 31
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.2e-14 Score=147.10 Aligned_cols=475 Identities=15% Similarity=0.180 Sum_probs=306.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHh
Q 002877 21 NEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRT 100 (872)
Q Consensus 21 ~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~ 100 (872)
.+|..+|.+|+++ ...|..+-+++... .+.....+|++.+|+++. ..+..+++......|+.|+..
T Consensus 2 ~~A~~~L~~FQ~S--~~aW~i~~eiL~~~-~~~~~~~FaaqTlr~Ki~-----------~~F~~Lp~~~~~slrdsl~th 67 (559)
T KOG2081|consen 2 EKANNWLGNFQKS--NDAWQICEEILSQK-CDVEALLFAAQTLRNKIQ-----------YDFSELPPLTHASLRDSLITH 67 (559)
T ss_pred chHhHHHHHhCCC--hHHHHHHHHHHccc-chHHHHHHHHHHHHHHHH-----------hhHHhcCcchhHHHHHHHHHH
Confidence 5789999999999 88898999999874 678999999999999885 456789998888888876654
Q ss_pred h---cCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCcccc--c-----
Q 002877 101 L---ASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDL--V----- 170 (872)
Q Consensus 101 l---~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l--~----- 170 (872)
+ .+..+.+|.+++.+++.++-+. | .|.+-++.++..+.+. .+. ...-+..|..+.++..+-.. +
T Consensus 68 l~~l~~~~~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~--~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~ 141 (559)
T KOG2081|consen 68 LKELHDHPDVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNK--HPA-VPILLEILKVLPEETRDIRLTVGANRRH 141 (559)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcC--Ccc-HHHHHHHHHhCcHhhcchhhhhhhhhHH
Confidence 4 3444599999999999999886 4 7999888888877765 444 44566777777766531000 0
Q ss_pred ------hhhHHHHHHHHHhcccCCC-CCHHHHHHHHHHHHHHHHH--HHhh-hhh-------------------------
Q 002877 171 ------QDEVNAVLTAVVQGMNLAE-HSAEVRLAATRALYNALDF--ALTN-FQN------------------------- 215 (872)
Q Consensus 171 ------~~~~~~l~~~l~~~l~~~~-~~~~vr~~al~~l~~~~~~--~~~~-~~~------------------------- 215 (872)
......++-.+..+++.++ ++..+-..+++|++++... +..+ +..
T Consensus 142 e~~~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~ci 221 (559)
T KOG2081|consen 142 EFIDELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECI 221 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHH
Confidence 1223334555555665543 3366777788888887641 1000 000
Q ss_pred ----------hhH---H------HHHHHHHHHhh-cCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH---HHHHHHHHHhc
Q 002877 216 ----------EME---R------NYIMKVVCETA-KSKEVEIRQAAFECLVSIASTYYEVLEPYMQ---TLFELTSNAVK 272 (872)
Q Consensus 216 ----------~~~---~------~~ll~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~---~l~~~~~~~~~ 272 (872)
... . ..+++..++.. ...+.+.+.+.++++..+.+.+...+...-+ .++..++....
T Consensus 222 c~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 222 CALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG 301 (559)
T ss_pred HHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc
Confidence 000 0 00122222221 2345566666677777776665444332211 24444555556
Q ss_pred CCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccC-Cc--ccCCCCcchhhh
Q 002877 273 GDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEE-DQ--DQDDSIWNISMA 349 (872)
Q Consensus 273 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~-d~--~~d~~~~~~r~~ 349 (872)
..+.++....+.||..+.+.-.....+ ......++|+.+++..+....+.+.+ +. ++.++....|..
T Consensus 302 h~~~evie~SF~fW~~lse~l~~~~~~----------~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~ 371 (559)
T KOG2081|consen 302 HNDTEVIEASFNFWYSLSEELTLTDDD----------EALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLK 371 (559)
T ss_pred CCchhhhhhhHHhhhhhHHHHhccccH----------HHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHH
Confidence 677789999999999998752211000 01234578888899998888876551 11 122234578999
Q ss_pred HHHHHHHHHhhcC-CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHH
Q 002877 350 GGTCLGLVARTVG-DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKD 428 (872)
Q Consensus 350 a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~ 428 (872)
..+.+..++...| ++.+..+...+.+ +++.|..-+|+++.+..++....+. -.+.+++++..+.+.- ....+|+
T Consensus 372 v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-e~~i~pevl~~i~nlp--~Q~~~~~ 446 (559)
T KOG2081|consen 372 VGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-ENTIMPEVLKLICNLP--EQAPLRY 446 (559)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-ccchHHHHHHHHhCCc--cchhHHH
Confidence 9999999998887 5556655555555 5668999999999999999887533 3335556655554432 2233999
Q ss_pred HHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHH---HH
Q 002877 429 TTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLT---SI 505 (872)
Q Consensus 429 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~---~i 505 (872)
+++..+|.+.+|... .+..+..++..+...+.... ...++..++..++..+ ...+.+.++ .+
T Consensus 447 ts~ll~g~~~ew~~~--------~p~~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c------~~~~~~l~~~~~~l 511 (559)
T KOG2081|consen 447 TSILLLGEYSEWVEQ--------HPELLEPVLRYIRQGLQLKR-LASAAALAFHRICSAC------RVQMTCLIPSLLEL 511 (559)
T ss_pred HHHHHHHHHHHHHHh--------CcHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHH------HHHhhhhhHHHHHH
Confidence 999999999999985 56677888888888887532 6667777788888877 333334333 33
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 002877 506 IAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELL 551 (872)
Q Consensus 506 l~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~ 551 (872)
+..+..... +++. . .....++.++...|..+....++++.
T Consensus 512 ~~~l~~~~~---~~e~--a-~l~~~~s~i~~~lp~~k~~~~~~el~ 551 (559)
T KOG2081|consen 512 IRSLDSTQI---NEEA--A-CLLQGISLIISNLPAHKAKIALEELC 551 (559)
T ss_pred HHHHHHHhc---cHHH--H-HHHHHHHHHHhcCCHhhhhHHHHHHh
Confidence 333333332 1112 2 26777788888877233444444443
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.1e-12 Score=131.92 Aligned_cols=405 Identities=15% Similarity=0.173 Sum_probs=282.3
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 002877 182 VQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMK-VVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYM 260 (872)
Q Consensus 182 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~-~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 260 (872)
.+.+.| ...+=|++|.--+-.++.-+-.+-+... .+.+++ .......+++..-|++++-.+...+-..+..-.+|+
T Consensus 6 ~r~ltd--KlYekRKaaalelEk~Vk~l~~~~~~~~-i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~ 82 (675)
T KOG0212|consen 6 ARGLTD--KLYEKRKAAALELEKLVKDLVNNNDYDQ-IRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYL 82 (675)
T ss_pred hhhhhh--HHHHHHHHHHHHHHHHHHHHHccCcHHH-HHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHH
Confidence 445555 5556677766655555542222211111 122344 444455666776677777777776655555555699
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccC
Q 002877 261 QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQD 340 (872)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d 340 (872)
..+++-++.++.|.+..+|..|++-+..++...+. -...+++.++..+.+..++.+
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~------------------~v~~~Fn~iFdvL~klsaDsd------ 138 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG------------------EVLVYFNEIFDVLCKLSADSD------ 138 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc------------------CcccchHHHHHHHHHHhcCCc------
Confidence 99999999999999999999999999999876331 112345567777666655322
Q ss_pred CCCcchhhhHHHHHHHHHhhcC-----CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHH
Q 002877 341 DSIWNISMAGGTCLGLVARTVG-----DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFL 415 (872)
Q Consensus 341 ~~~~~~r~~a~~~l~~l~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l 415 (872)
.++|. +++.++++.+... .--++.++|.+.+.+...++..|...+..+..+-.... -.+-.|++.+++.+
T Consensus 139 ---~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGL 213 (675)
T KOG0212|consen 139 ---QNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGL 213 (675)
T ss_pred ---ccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHH
Confidence 34444 4677888877642 23467899999999999999999999988888876653 56777999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCC
Q 002877 416 LNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPS 494 (872)
Q Consensus 416 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~ 494 (872)
+..|+|+++.||..+-.+++.+...+.+. ...-..+.+++.+...++. ++.++..|..-+..++.-.
T Consensus 214 f~~LsD~s~eVr~~~~t~l~~fL~eI~s~------P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~------ 281 (675)
T KOG0212|consen 214 FNMLSDSSDEVRTLTDTLLSEFLAEIRSS------PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP------ 281 (675)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcC------ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC------
Confidence 99999999999999999999988776651 1122456788888888887 9999999988899988876
Q ss_pred CCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCccc---HHHHHHHHHHHHHHHHHHHhhhhcCcch
Q 002877 495 SSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITET---SQIIAELLPAIMGRLGQTLELQIVSSDD 571 (872)
Q Consensus 495 ~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (872)
+..+-+|+..|+..+++++...+ +.+.+..+...-+.+.+-++ ... .--+..++..+...+.
T Consensus 282 g~~~l~~~s~il~~iLpc~s~~e--~~~i~~~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~------------ 346 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSDTE--EMSIKEYAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLS------------ 346 (675)
T ss_pred CcchhhhhhhhhhhcccCCCCCc--cccHHHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhh------------
Confidence 88899999999999999997433 33345555444434443333 110 0112233333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh-HHHhhhHH
Q 002877 572 REKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP-EFAKYMPE 650 (872)
Q Consensus 572 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~l~~ 650 (872)
+...+.|..++.-+..+..+.+. .+..+..+++..++..+.+++..|...++..++.++..... +..+|+..
T Consensus 347 -~~~~~tri~~L~Wi~~l~~~~p~------ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~s 419 (675)
T KOG0212|consen 347 -DDREETRIAVLNWIILLYHKAPG------QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLS 419 (675)
T ss_pred -cchHHHHHHHHHHHHHHHhhCcc------hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 23455677888888888888888 78888999999999999999999999999999998875443 33333333
Q ss_pred HH
Q 002877 651 FY 652 (872)
Q Consensus 651 i~ 652 (872)
++
T Consensus 420 LL 421 (675)
T KOG0212|consen 420 LL 421 (675)
T ss_pred HH
Confidence 33
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.67 E-value=2.1e-12 Score=145.19 Aligned_cols=477 Identities=16% Similarity=0.160 Sum_probs=317.0
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN 301 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 301 (872)
.+..+.+.+.+++...|+.+.-.+..+....++.+ --.++.+...+.++++.++..|+.+++.++..
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~----~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--------- 109 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL----ILIINSLQKDLNSPNPYIRGLALRTLSNIRTP--------- 109 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH----HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH----HHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc---------
Confidence 55666777778999999999999988887766632 23556666778899999999999999888753
Q ss_pred CCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCC
Q 002877 302 PETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSD 381 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 381 (872)
...+.+++.+.+.+.+. .+.+|+.|..++..+....|+.+-+.+.+.+.+.+.+++
T Consensus 110 ---------------~~~~~l~~~v~~ll~~~---------~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~ 165 (526)
T PF01602_consen 110 ---------------EMAEPLIPDVIKLLSDP---------SPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD 165 (526)
T ss_dssp ---------------HHHHHHHHHHHHHHHSS---------SHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS
T ss_pred ---------------chhhHHHHHHHHHhcCC---------chHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc
Confidence 22345666666666532 278999999999999998776554337899999999999
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH--HHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL--QRI 459 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~ 459 (872)
+.++.+|+.++..+ ... ++.....++.++..+.+.+.+++|.++...+.++..++..... .. ..+
T Consensus 166 ~~V~~~a~~~l~~i-~~~-~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~-----------~~~~~~~ 232 (526)
T PF01602_consen 166 PSVVSAALSLLSEI-KCN-DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE-----------DADKNRI 232 (526)
T ss_dssp HHHHHHHHHHHHHH-HCT-HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH-----------HHHHHHH
T ss_pred chhHHHHHHHHHHH-ccC-cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh-----------hhhHHHH
Confidence 99999999999998 221 2222245677778888888999999999999998877643332 22 467
Q ss_pred HHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcC
Q 002877 460 LTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCS 538 (872)
Q Consensus 460 l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~ 538 (872)
++.+...+.+ ++.|...|+.++..+... .+....+++.+...+... +.++|..+++++..++...
T Consensus 233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-----------~~~~~~~~~~L~~lL~s~---~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 233 IEPLLNLLQSSSPSVVYEAIRLIIKLSPS-----------PELLQKAINPLIKLLSSS---DPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----------HHHHHHHHHHHHHHHTSS---SHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhcc-----------hHHHHhhHHHHHHHhhcc---cchhehhHHHHHHHhhccc
Confidence 8888888887 888988888887755432 126777888888888732 3556777777766665443
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHH
Q 002877 539 NITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF 618 (872)
Q Consensus 539 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 618 (872)
+ . .+. + ..-.+..+.
T Consensus 299 ~-~------------------------------------------------------------~v~-~---~~~~~~~l~ 313 (526)
T PF01602_consen 299 P-P------------------------------------------------------------AVF-N---QSLILFFLL 313 (526)
T ss_dssp H-H------------------------------------------------------------HHG-T---HHHHHHHHH
T ss_pred c-h------------------------------------------------------------hhh-h---hhhhhheec
Confidence 2 0 010 0 001112223
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 002877 619 ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLL 698 (872)
Q Consensus 619 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 698 (872)
.+.+..+|..++..+..++... . ...+++.+...+.+..+.+++..++..++.++..... ...++++.++
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~~--n----~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~----~~~~~v~~l~ 383 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANES--N----VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP----DAEWYVDTLL 383 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--HH--H----HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS----SHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHhhccccc--c----hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc----hHHHHHHHHH
Confidence 3668899999999998887632 2 2345666666664444567999999999999988754 4566677788
Q ss_pred HHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhc
Q 002877 699 NALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQG 778 (872)
Q Consensus 699 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 778 (872)
+.+... ...+...++..+.++....++..... +..+.+.+.... + .. +..+...+++.
T Consensus 384 ~ll~~~--~~~~~~~~~~~i~~ll~~~~~~~~~~----l~~L~~~l~~~~-----~-------~~----~~~~~~wilGE 441 (526)
T PF01602_consen 384 KLLEIS--GDYVSNEIINVIRDLLSNNPELREKI----LKKLIELLEDIS-----S-------PE----ALAAAIWILGE 441 (526)
T ss_dssp HHHHCT--GGGCHCHHHHHHHHHHHHSTTTHHHH----HHHHHHHHTSSS-----S-------HH----HHHHHHHHHHH
T ss_pred Hhhhhc--cccccchHHHHHHHHhhcChhhhHHH----HHHHHHHHHHhh-----H-------HH----HHHHHHhhhcc
Confidence 888766 56777888888888887655443333 344444333210 0 01 22333344443
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHh-cCCcHHHHH
Q 002877 779 FKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECL-RSDDEQLKE 857 (872)
Q Consensus 779 l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~-~~~~~~~~~ 857 (872)
.+..... .. ....++..+...+.+ .++.++..++.++..+....+.... ...++..+.+.+. ++.++++|+
T Consensus 442 y~~~~~~-~~-~~~~~~~~l~~~~~~--~~~~vk~~ilt~~~Kl~~~~~~~~~----~~~i~~~~~~~~~~~s~~~evr~ 513 (526)
T PF01602_consen 442 YGELIEN-TE-SAPDILRSLIENFIE--ESPEVKLQILTALAKLFKRNPENEV----QNEILQFLLSLATEDSSDPEVRD 513 (526)
T ss_dssp HCHHHTT-TT-HHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHSCSTTH----HHHHHHHHHCHHHHS-SSHHHHH
T ss_pred cCCcccc-cc-cHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhCCchhh----HHHHHHHHHHHhccCCCCHHHHH
Confidence 3332111 11 456666666665544 4678999999999999988875422 1233444444422 388999999
Q ss_pred HHHHHHHHHH
Q 002877 858 TAGWTQGMIN 867 (872)
Q Consensus 858 ~a~~~~~~~~ 867 (872)
.|.+-++.+.
T Consensus 514 Ra~~y~~ll~ 523 (526)
T PF01602_consen 514 RAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9998877654
No 34
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.8e-09 Score=115.59 Aligned_cols=615 Identities=14% Similarity=0.195 Sum_probs=331.3
Q ss_pred hhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHH-hhhccCcc-------ccch
Q 002877 100 TLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGY-VCEEISHQ-------DLVQ 171 (872)
Q Consensus 100 ~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~-l~~~~~~~-------~l~~ 171 (872)
+..++++..|+.|-+-+..+- +-|.+++.+++.+.+++....+|.+|..-|.. +.+.+++. .+-.
T Consensus 12 ~T~d~d~~~R~~AE~~L~q~~-------K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e 84 (1010)
T KOG1991|consen 12 ATIDSDAKERKAAEQQLNQLE-------KQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPE 84 (1010)
T ss_pred HhcCCChHHHHHHHHHHHHhh-------cCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCCh
Confidence 334567899998888776652 66789999999998875455678777776665 55556421 0102
Q ss_pred hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Q 002877 172 DEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 172 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (872)
..-..+-..++..+-. .+.-+|..--.|+..++. .++.. ..+-++..+...+++++...--.++-|+..+++.
T Consensus 85 ~dk~~irenIl~~iv~--~p~~iRvql~~~l~~Ii~---~D~p~--~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ 157 (1010)
T KOG1991|consen 85 EDKAVIRENILETIVQ--VPELIRVQLTACLNTIIK---ADYPE--QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKT 157 (1010)
T ss_pred HHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHh---cCCcc--cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Confidence 2333444555555554 244566666666666542 33321 1233778888888888888888999999999987
Q ss_pred hh-------hhhHHhHHHHHHHH----HHHhcCCChH---HHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHH
Q 002877 252 YY-------EVLEPYMQTLFELT----SNAVKGDEEA---VALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEK 317 (872)
Q Consensus 252 ~~-------~~~~~~l~~l~~~~----~~~~~~~~~~---~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (872)
|. ..+...+..+++.+ .+.+..++.+ +....+.....++-.+.+... +...
T Consensus 158 ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L---------------~~~~ 222 (1010)
T KOG1991|consen 158 YEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLEL---------------SAPE 222 (1010)
T ss_pred HhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHh---------------hCch
Confidence 74 12333334444433 3333333322 223333322233332221100 1112
Q ss_pred hHHhhHHHHHHHHhccc--C----Cccc--CCCCcchhhhHHHHHHHHHhhcCCcch--h--------------------
Q 002877 318 ARSSLVPMLLETLLKQE--E----DQDQ--DDSIWNISMAGGTCLGLVARTVGDEVV--P-------------------- 367 (872)
Q Consensus 318 ~l~~l~~~l~~~l~~~~--~----d~~~--d~~~~~~r~~a~~~l~~l~~~~~~~~~--~-------------------- 367 (872)
.+...+..++..+..+- | |+++ ....|+..+.|...|.++.+.+|+... +
T Consensus 223 ~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~ 302 (1010)
T KOG1991|consen 223 TFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEV 302 (1010)
T ss_pred hHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 22334444444443321 1 1110 113467778888888888777653211 0
Q ss_pred --------------------chHHHHHhhcc---------------------------C---------CC----------
Q 002877 368 --------------------LVMPFVEANIV---------------------------K---------SD---------- 381 (872)
Q Consensus 368 --------------------~l~~~l~~~l~---------------------------~---------~~---------- 381 (872)
.+++++.++++ + +.
T Consensus 303 ~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ 382 (1010)
T KOG1991|consen 303 FLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIF 382 (1010)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchh
Confidence 01122222211 0 00
Q ss_pred ---cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHhhccCCCCCccc
Q 002877 382 ---WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR--------DENNHVKDTTAWTLSRIFELLHCPATGFSV 450 (872)
Q Consensus 382 ---~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
..-+-||..++..++...++ ..++.+++++.+.+. ..+++-+.-|+.++|.+++.+.. ..
T Consensus 383 ed~~sp~~Aa~~~l~~~~~KR~k----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K-----~s 453 (1010)
T KOG1991|consen 383 EDGYSPDTAALDFLTTLVSKRGK----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK-----KS 453 (1010)
T ss_pred cccCCCcHHHHHHHHHHHHhcch----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc-----CC
Confidence 11123555555555554432 235555666666553 34678888999999999988776 22
Q ss_pred cCcccHHH-HHHHHHHHhhc-ChHHHHHHHHHHHHHHH-hhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHH
Q 002877 451 ISPENLQR-ILTVLLESIKD-APNVAEKVCGAIYYLAQ-GYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAA 527 (872)
Q Consensus 451 ~~~~~~~~-~l~~l~~~l~d-~~~v~~~a~~al~~l~~-~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 527 (872)
.....++. +++.+++.+++ -...|.+|||.++.+++ .+. -...+.+++....+++.+ +.+..||..|
T Consensus 454 ~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--------d~~~l~~ale~t~~~l~~--d~~lPV~VeA 523 (1010)
T KOG1991|consen 454 PYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK--------DPNNLSEALELTHNCLLN--DNELPVRVEA 523 (1010)
T ss_pred chHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC--------ChHHHHHHHHHHHHHhcc--CCcCchhhHH
Confidence 22233333 34556667777 67789999999999993 331 124566777777788773 3456679999
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH
Q 002877 528 YETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA 607 (872)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 607 (872)
.-|+..++.+.. ...+++...+|++++.+-...+.. +. ..+..++..++..+++ .+.||+
T Consensus 524 alALq~fI~~~~--~~~e~~~~hvp~~mq~lL~L~ne~-----En-------d~Lt~vme~iV~~fse------ElsPfA 583 (1010)
T KOG1991|consen 524 ALALQSFISNQE--QADEKVSAHVPPIMQELLKLSNEV-----EN-------DDLTNVMEKIVCKFSE------ELSPFA 583 (1010)
T ss_pred HHHHHHHHhcch--hhhhhHhhhhhHHHHHHHHHHHhc-----ch-------hHHHHHHHHHHHHHHH------hhchhH
Confidence 999999999876 223445555555555544432210 00 1235678888888888 888887
Q ss_pred HHHHH----HHHHHHcc---CChhHHHHHHHHHHHH------HHHhhh--HHHh-hhHHHHHHHHhhhcccchHhHHHHH
Q 002877 608 DQIMV----LFLRVFAC---RSSTVHEEAMLAIGAL------AYATGP--EFAK-YMPEFYQYLQMGLQNSEEYQVCAIT 671 (872)
Q Consensus 608 ~~l~~----~l~~~l~~---~~~~v~~~a~~~l~~l------~~~~~~--~~~~-~l~~i~~~l~~~l~~~~~~~v~~~a 671 (872)
..+.+ .+.+++.. .+....+.++.++|-+ ...... .+.. .-+.++|.+...+++
T Consensus 584 ~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~---------- 653 (1010)
T KOG1991|consen 584 VELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKN---------- 653 (1010)
T ss_pred HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH----------
Confidence 65554 45555653 2334444455444443 111110 1111 111222222222221
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCC-CCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhcccc
Q 002877 672 VGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQL-NRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQL 750 (872)
Q Consensus 672 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~ 750 (872)
...++...++.+..+.+. .+++.......+..+.....+.-..|++.++|.+-..+..
T Consensus 654 -----------------~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~---- 712 (1010)
T KOG1991|consen 654 -----------------DITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTY---- 712 (1010)
T ss_pred -----------------hhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheee----
Confidence 111222222222222111 2334444455555554444444455666666655443211
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcch
Q 002877 751 DMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNT 830 (872)
Q Consensus 751 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 830 (872)
+-+.. ..-..|...++..+.+.+.+.+..+.=...|+.++..++.+|+. .
T Consensus 713 ---------------------------g~~~~--~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~ 762 (1010)
T KOG1991|consen 713 ---------------------------GTPSL--LSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-L 762 (1010)
T ss_pred ---------------------------Cchhh--hccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-c
Confidence 00000 01234556677777777766665556666789999999999998 3
Q ss_pred hhhccCchHHHHHHHHHh
Q 002877 831 KLLFKDSSFCNDFMSECL 848 (872)
Q Consensus 831 ~~~~~~~~~v~~ll~~~~ 848 (872)
+ +++++.+++.++
T Consensus 763 ~-----dq~iplf~~~a~ 775 (1010)
T KOG1991|consen 763 L-----DQYIPLFLELAL 775 (1010)
T ss_pred H-----hhHhHHHHHHHH
Confidence 3 335666666533
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.2e-14 Score=144.90 Aligned_cols=397 Identities=15% Similarity=0.197 Sum_probs=264.3
Q ss_pred HHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCCCccc
Q 002877 373 VEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPATGFSV 450 (872)
Q Consensus 373 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
....+.+.+...+..+...+..+........+...+. .++|.+++.|. +.+|.++..|+|+|.+++....+
T Consensus 71 ~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse------- 143 (514)
T KOG0166|consen 71 MLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSE------- 143 (514)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchh-------
Confidence 3344456666666667777766655432122333333 88899999995 77899999999999999976654
Q ss_pred cCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH--HHHHHHHHHhhccCCCcchhHHHH
Q 002877 451 ISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL--TSIIAELLRAADRTDVGGSKLRSA 526 (872)
Q Consensus 451 ~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~ 526 (872)
....++ ...++.+..++.+ +..|++.|.|||++++... .....|. ..+++.|+..+...+ .....+.
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds-------~~~Rd~vl~~g~l~pLl~~l~~~~--~~~~lRn 214 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS-------PDCRDYVLSCGALDPLLRLLNKSD--KLSMLRN 214 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC-------hHHHHHHHhhcchHHHHHHhcccc--chHHHHH
Confidence 111122 2456778888888 9999999999999998652 2233332 356777777776433 2345788
Q ss_pred HHHHHHHHHhcC-CCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchh
Q 002877 527 AYETLNEVVRCS-NITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQ 605 (872)
Q Consensus 527 a~~al~~l~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 605 (872)
+.++++.+.+.. | .--...+..++|.+...+.. ...++...+|+++.++...-.+ .+.-
T Consensus 215 ~tW~LsNlcrgk~P-~P~~~~v~~iLp~L~~ll~~-------------~D~~Vl~Da~WAlsyLsdg~ne------~iq~ 274 (514)
T KOG0166|consen 215 ATWTLSNLCRGKNP-SPPFDVVAPILPALLRLLHS-------------TDEEVLTDACWALSYLTDGSNE------KIQM 274 (514)
T ss_pred HHHHHHHHHcCCCC-CCcHHHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHHHhcCChH------HHHH
Confidence 999999999876 3 33345667778888776663 2355778899999998654443 3333
Q ss_pred hHH-HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 606 TAD-QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 606 ~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
.++ .+++.++.+|.+.+..++-.|+.++|+++.....+-.-.+ ...+|.+...+..+....++..|||++++|.....
T Consensus 275 vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 275 VIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ 354 (514)
T ss_pred HHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence 333 6888999999999999999999999998776554433333 36788888888755555589999999999987554
Q ss_pred CCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHH--HHHHHHHHHHHhccccCCCchHHHHH
Q 002877 684 DKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVP--HALQMMQEAAKACAQLDMEDEELIDY 760 (872)
Q Consensus 684 ~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~~~~~~~~~~~d~~~~~~ 760 (872)
++....+ ..++|.|+..|+.. +..+|+.|.+++++++.....+-..|+- .+++.++..+.- .|
T Consensus 355 ~qiqaVida~l~p~Li~~l~~~--ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~-~D----------- 420 (514)
T KOG0166|consen 355 EQIQAVIDANLIPVLINLLQTA--EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTC-PD----------- 420 (514)
T ss_pred HHHHHHHHcccHHHHHHHHhcc--chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccC-CC-----------
Confidence 4444444 37899999999988 7889999999999988765444444442 466666665421 11
Q ss_pred HHHHHHHHHHHHHhHhhccchhhh---hhhhhhHHH--HHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 002877 761 GNQLRSSIFEAYSGILQGFKSARA---EVMMPYAQH--LLQFIELIFKDNHRDENVTKAAVAVMGDL 822 (872)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~--il~~l~~~~~~~~~~~~~~~~a~~~l~~l 822 (872)
..+-..+++++..++..-..... ..+..+++. .++.+..+.+ +.++++.+.|..+|+..
T Consensus 421 -~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~--hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 421 -VKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS--HENEEIYKKAYKIIDTY 484 (514)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc--cccHHHHHHHHHHHHHh
Confidence 12234456666666654322110 112222221 2334444322 25688888888887763
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.65 E-value=2.3e-12 Score=144.85 Aligned_cols=509 Identities=15% Similarity=0.155 Sum_probs=335.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 4 EITQFLLAAQSADANIRNEAEANLRQLQQ--QNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 4 ~~~~~l~~~~s~~~~~r~~A~~~L~~~~~--~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
|+.+.++... .+...++.|-+.|-.+.. .+.+.+....+..+. +.+...|.++-..+......
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~------------ 72 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHE------------ 72 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTT------------
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhc------------
Confidence 4555555444 466677777777765443 234444555555555 45799999999988776542
Q ss_pred hhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhh
Q 002877 82 WLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVC 161 (872)
Q Consensus 82 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 161 (872)
.++..--+-+.+.+-|.++++.+|..|-.+++.+...+ ..+.+++.+.+.+.++ ++.+|..|+.++..+.
T Consensus 73 ----~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~--~~~VRk~A~~~l~~i~ 142 (526)
T PF01602_consen 73 ----DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDP--SPYVRKKAALALLKIY 142 (526)
T ss_dssp ----SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCC--chHHHHHHHHHHHHHh
Confidence 34445567778888899999999999999999988444 6688999999999999 9999999999999999
Q ss_pred hccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHH
Q 002877 162 EEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAA 241 (872)
Q Consensus 162 ~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 241 (872)
... |+.+ ... +++.+.+.+.+ +++.|+.+|+.++..+ ..-+..+. ...+.+...+.+.+...++-.+..+
T Consensus 143 ~~~-p~~~-~~~---~~~~l~~lL~d--~~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~i 212 (526)
T PF01602_consen 143 RKD-PDLV-EDE---LIPKLKQLLSD--KDPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKI 212 (526)
T ss_dssp HHC-HCCH-HGG---HHHHHHHHTTH--SSHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred ccC-HHHH-HHH---HHHHHhhhccC--CcchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccccchHHHHHH
Confidence 886 4543 221 68888888877 6799999999999987 11111101 1123355566666677888888899
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHh
Q 002877 242 FECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSS 321 (872)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 321 (872)
++++..+....+..-.. ..+++.+...+++.++.+...++.++..+... .+.+..
T Consensus 213 l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-----------------------~~~~~~ 267 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-----------------------PELLQK 267 (526)
T ss_dssp HHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----------------------HHHHHH
T ss_pred HHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-----------------------hHHHHh
Confidence 99988776544443311 33455444445566677887777766654432 113445
Q ss_pred hHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCc
Q 002877 322 LVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTI 401 (872)
Q Consensus 322 l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 401 (872)
+++.+...+...+ .++|..+.+++..++...+..+. .....+.....+++...|..++..+..++..
T Consensus 268 ~~~~L~~lL~s~~---------~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--- 334 (526)
T PF01602_consen 268 AINPLIKLLSSSD---------PNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE--- 334 (526)
T ss_dssp HHHHHHHHHTSSS---------HHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---
T ss_pred hHHHHHHHhhccc---------chhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc---
Confidence 6677777775321 67899988888888776633332 2111222222377788899999999888863
Q ss_pred cchhHhHHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHH
Q 002877 402 DKLAPLVHAGFDFLLNAMRD-ENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCG 479 (872)
Q Consensus 402 ~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~ 479 (872)
. .+..+++.+.+.+.+ .++.+|..++..++.++...+. .....++.++..+.. +..+...++.
T Consensus 335 ~----n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-----------~~~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 335 S----NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-----------DAEWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp H----HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-----------SHHHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred c----chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-----------hHHHHHHHHHHhhhhccccccchHHH
Confidence 2 345567777777743 4777999999999999987764 456677777777775 5666777777
Q ss_pred HHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Q 002877 480 AIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLG 559 (872)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~ 559 (872)
.+..+.... ++. ...++..+...+... ....++..+++.+|......+ . .. ....++..+.+.+.
T Consensus 400 ~i~~ll~~~------~~~----~~~~l~~L~~~l~~~--~~~~~~~~~~wilGEy~~~~~-~-~~-~~~~~~~~l~~~~~ 464 (526)
T PF01602_consen 400 VIRDLLSNN------PEL----REKILKKLIELLEDI--SSPEALAAAIWILGEYGELIE-N-TE-SAPDILRSLIENFI 464 (526)
T ss_dssp HHHHHHHHS------TTT----HHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHCHHHT-T-TT-HHHHHHHHHHHHHT
T ss_pred HHHHHhhcC------hhh----hHHHHHHHHHHHHHh--hHHHHHHHHHhhhcccCCccc-c-cc-cHHHHHHHHHHhhc
Confidence 788887664 222 344567777777643 345568899999998877666 3 00 23333333333332
Q ss_pred HHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHc--cCChhHHHHHHHHHHHH
Q 002877 560 QTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFA--CRSSTVHEEAMLAIGAL 636 (872)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~v~~~a~~~l~~l 636 (872)
.....++..++.++..+....+.. . ..+.+++.+..... +.+.++|+.|...+.-+
T Consensus 465 -------------~~~~~vk~~ilt~~~Kl~~~~~~~-----~---~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 465 -------------EESPEVKLQILTALAKLFKRNPEN-----E---VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp -------------TSHHHHHHHHHHHHHHHHHHSCST-----T---HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred -------------cccHHHHHHHHHHHHHHHhhCCch-----h---hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 123457777788888887766642 1 22367777777777 77999999998776554
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.63 E-value=1e-10 Score=129.85 Aligned_cols=469 Identities=13% Similarity=0.092 Sum_probs=279.9
Q ss_pred cCCCh-hHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHH
Q 002877 102 ASPVP-EARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTA 180 (872)
Q Consensus 102 ~~~~~-~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~ 180 (872)
.+.+. ..+..+..+++.+... ..-..+++.++..+.++ +...|+-+-..+..+.+.- .+..--.++.
T Consensus 42 ~s~~~~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~------pelalLaINt 109 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQ------PEKALLAVNT 109 (746)
T ss_pred HCCCHHHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccC------hHHHHHHHHH
Confidence 44443 3455566666666543 25567889999999888 8888877666665555433 2334446777
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 002877 181 VVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYM 260 (872)
Q Consensus 181 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 260 (872)
+.+-+++ +++.+|-.|+++++.+-. ....+++...+.+++.+.++-||+.|.-|+..+....|+.+..
T Consensus 110 l~KDl~d--~Np~IRaLALRtLs~Ir~--------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~-- 177 (746)
T PTZ00429 110 FLQDTTN--SSPVVRALAVRTMMCIRV--------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ-- 177 (746)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCc--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--
Confidence 8888888 789999999999997521 1223457788888899999999999999999998877765431
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccC
Q 002877 261 QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQD 340 (872)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d 340 (872)
..+.+.+...+.|.++.+...|+..+..+.+..+. ...+..+++ ..++..+.+.+
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~---------------~l~l~~~~~----~~Ll~~L~e~~------ 232 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE---------------KIESSNEWV----NRLVYHLPECN------ 232 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch---------------hhHHHHHHH----HHHHHHhhcCC------
Confidence 12333333446788999999999988888764221 011222222 22333332211
Q ss_pred CCCcchhhhHHHHHHHHHhhcCC--cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh
Q 002877 341 DSIWNISMAGGTCLGLVARTVGD--EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA 418 (872)
Q Consensus 341 ~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~ 418 (872)
+ |..- ..|+.++...|. .-...++..+...+++.+..+..+++.++-.+.....++.....+..+.+.++..
T Consensus 233 E--W~Qi----~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L 306 (746)
T PTZ00429 233 E--WGQL----YILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL 306 (746)
T ss_pred h--HHHH----HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh
Confidence 2 7533 345555555442 2234567778888888888888888888777765542222333333444555544
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 002877 419 MRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLL 498 (872)
Q Consensus 419 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (872)
...++.+|..++..+..+....+. .+..-+..++-..+|...|+......+..++...
T Consensus 307 -~ss~~eiqyvaLr~I~~i~~~~P~-----------lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~---------- 364 (746)
T PTZ00429 307 -SRRDAETQYIVCKNIHALLVIFPN-----------LLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPS---------- 364 (746)
T ss_pred -hCCCccHHHHHHHHHHHHHHHCHH-----------HHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcc----------
Confidence 456678888888887776654432 2333333333444554456777777666665331
Q ss_pred hhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHH
Q 002877 499 SPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDL 578 (872)
Q Consensus 499 ~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 578 (872)
.+..|+..|.......| ..++..+..+++.++...+
T Consensus 365 --Nv~~IL~EL~eYa~d~D---~ef~r~aIrAIg~lA~k~~--------------------------------------- 400 (746)
T PTZ00429 365 --VAPEILKELAEYASGVD---MVFVVEVVRAIASLAIKVD--------------------------------------- 400 (746)
T ss_pred --cHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHhCh---------------------------------------
Confidence 12344444444443211 2335555555555543333
Q ss_pred HHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhh
Q 002877 579 QASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMG 658 (872)
Q Consensus 579 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 658 (872)
. ....+++.|+..+...... ...++..+..+.+..+... +++.+...
T Consensus 401 ----------------~----------~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~IlrkyP~~~------il~~L~~~ 447 (746)
T PTZ00429 401 ----------------S----------VAPDCANLLLQIVDRRPEL-LPQVVTAAKDIVRKYPELL------MLDTLVTD 447 (746)
T ss_pred ----------------H----------HHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHCccHH------HHHHHHHh
Confidence 2 2334555555555443332 3345566666655444321 33444332
Q ss_pred h--cccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhh
Q 002877 659 L--QNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEK 731 (872)
Q Consensus 659 l--~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 731 (872)
+ ..-.+++.+.+.+|.+|.++..+.+ .+.++..+++.+... +..+|-.++.+...+....+++..+
T Consensus 448 ~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E--~~~VqlqlLta~vKlfl~~p~~~~~ 515 (746)
T PTZ00429 448 YGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEH--EQRVQLAILSAAVKMFLRDPQGMEP 515 (746)
T ss_pred hcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccC--CHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 2 2334567888899999998775532 345565555555544 6778888899998888877654433
No 38
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.4e-08 Score=112.55 Aligned_cols=757 Identities=15% Similarity=0.139 Sum_probs=385.9
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHH
Q 002877 34 NLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSA 113 (872)
Q Consensus 34 ~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~ 113 (872)
.++++...+...+...+.+..++..+.-.|...+...+ ...|. ....++.+. .++....+..|.+|..+.
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd-------~~aW~--~~~t~~~~~-~il~~~~h~~pkvRk~a~ 159 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQD-------ASAWS--YSSTKTELF-GILAFAAHKKPKVRKAAQ 159 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcc-------hhhhc--cccHHHHHH-HHHHHHhcCchHHHHHHH
Confidence 35666777777777556678888888888877775432 46787 333444443 455566678899999999
Q ss_pred HHHHHHHHhh--cCCCCchHHHH---HHHHhhccCC--ccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhccc
Q 002877 114 QVIAKIASIE--IPQKQWPELIR---SLLNNMTQQD--SLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMN 186 (872)
Q Consensus 114 ~~l~~i~~~~--~p~~~~~~ll~---~l~~~l~~~~--~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~ 186 (872)
++++.+...- .|...-|.... ..++.+.+.- .........|..|..++-.+ | ....+.+...++..+.
T Consensus 160 ~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~-p----~~li~sl~e~lL~i~~ 234 (1176)
T KOG1248|consen 160 RGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTF-P----RPLIKSLCEVLLNITT 234 (1176)
T ss_pred HHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccC-C----HHHHHHHHHHHHhhcc
Confidence 9999988631 12222332222 2222222210 01222334556666666555 2 4557778888888887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHH-HHHHHH----HHHHHHhhhhhhHHhHH
Q 002877 187 LAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR-QAAFEC----LVSIASTYYEVLEPYMQ 261 (872)
Q Consensus 187 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~-~~~~~~----l~~l~~~~~~~~~~~l~ 261 (872)
. .+..++..++.|+.++...-......+ ....++..+.+.--+.+.... ..=+.. ...++....+.....++
T Consensus 235 ~--s~v~v~~~~~q~l~~lf~~~~~~l~a~-~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~ 311 (1176)
T KOG1248|consen 235 E--SPVLVLLEVLQCLHSLFKKHPTALAAE-LNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALP 311 (1176)
T ss_pred c--chHHHHHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhh
Confidence 6 467899999999998754322211111 112255555555433222211 111111 11122223334445556
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhc-CC-CCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCC---
Q 002877 262 TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFE-NP-ETGDSDSPNYHFIEKARSSLVPMLLETLLKQEED--- 336 (872)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d--- 336 (872)
.++..+.....+..+++...+-+.+..+........... .. -. ......++..-+.+-+++..++..+.+....
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~-~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~ 390 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVTVIDALCSKQLH-SLLDYKFHAVWRFILQILSALFEKCGELSGPELT 390 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHH-HHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHH
Confidence 677777666666777777666666666654322100000 00 00 0000000011111112222333332221100
Q ss_pred -------c--ccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHh
Q 002877 337 -------Q--DQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPL 407 (872)
Q Consensus 337 -------~--~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~ 407 (872)
+ ..++ ..-+...-+|++.-....|...+=.++|. .+... ..+..-.+.|-.+-++.....+.-+
T Consensus 391 ~~L~~l~~lr~~~d--~~~~~~ld~~IGSAV~AmGPe~vL~~lpL---nl~~~--s~~~~RsWLLPvLR~~i~~A~La~F 463 (1176)
T KOG1248|consen 391 KTLEGLCDLRASPD--FFHKLQLDQCIGSAVRAMGPERVLTILPL---NLHAE--SLSFTRSWLLPVLRDYIIGASLAFF 463 (1176)
T ss_pred HHHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhCHHHHHHHcch---hcccc--ccccchhHhHHHHHHhhccCcHHHH
Confidence 0 0111 12222333333333333331111111111 11000 0011111222222222211222223
Q ss_pred HHhHHHHHHHhc------C--CCcH-HHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHH
Q 002877 408 VHAGFDFLLNAM------R--DENN-HVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVC 478 (872)
Q Consensus 408 l~~l~~~l~~~l------~--d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~ 478 (872)
...++|...... . +..+ .++.-....++-+-.++.. |.+...-+..+.+.+...+...+..|...|
T Consensus 464 ~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~-----P~Dl~~sF~~la~~l~~al~~~~elr~~Ic 538 (1176)
T KOG1248|consen 464 TEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY-----PVDLAESFTDLAPILGAALLKRPELRETIC 538 (1176)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC-----CccHHHHHHHHHHHHHHHHhcchHhHHHHH
Confidence 334444433332 1 2222 3333344444545555554 445566678888888888887889999999
Q ss_pred HHHHHHHHhhc---cCCCCCCCchhhHHHHHHHHHHhhccCCCcc---hhHHHHHHHHHH-HHHhcCCCcccHHHHHHHH
Q 002877 479 GAIYYLAQGYE---DAGPSSSLLSPYLTSIIAELLRAADRTDVGG---SKLRSAAYETLN-EVVRCSNITETSQIIAELL 551 (872)
Q Consensus 479 ~al~~l~~~~~---~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~---~~vr~~a~~al~-~l~~~~~~~~~~~~~~~l~ 551 (872)
.+|..+++... ........+..+..+.+|.+.+......... ...|...++.+. ..+...+ .+..
T Consensus 539 ~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~-~dv~------- 610 (1176)
T KOG1248|consen 539 NSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTP-TDVV------- 610 (1176)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhccc-HHHH-------
Confidence 99999998752 1111134456778888998888776433221 223444444444 3334443 2211
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHc-cCChhHHHHHH
Q 002877 552 PAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFA-CRSSTVHEEAM 630 (872)
Q Consensus 552 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~v~~~a~ 630 (872)
..+.+..... . +..|...........+..+..++.....+ ++..++ .+..... +.+..++..++
T Consensus 611 ~~l~~s~~e~----a-s~~~~s~~~~~~~slLdl~~~~a~~~~e~---------~vs~l~-~v~~~~e~~~~~~vQkK~y 675 (1176)
T KOG1248|consen 611 GSLKDSAGEL----A-SDLDESVASFKTLSLLDLLIALAPVQTES---------QVSKLF-TVDPEFENSSSTKVQKKAY 675 (1176)
T ss_pred HHHHHHHHhH----h-ccchhhhhhHHHHHHHHHHHhhhccccch---------hHHHHH-HhhHHhhccccHHHHHHHH
Confidence 1111111111 0 11110111112222333333333332221 223333 3333333 33778999999
Q ss_pred HHHHHHHHH--hhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCC
Q 002877 631 LAIGALAYA--TGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNR 708 (872)
Q Consensus 631 ~~l~~l~~~--~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 708 (872)
..|..+... ........+..+...+...+++...+ .+..++.+|..+.+..+.....+++..++.++=.+.. .+.
T Consensus 676 rlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~-~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke--~n~ 752 (1176)
T KOG1248|consen 676 RLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSP-AQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE--VNV 752 (1176)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc--ccH
Confidence 999998776 22233456677777887777766544 8899999999999988866666777777666555543 367
Q ss_pred CCchhHHHHHHHHH--Hhh---ccch-hhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHH--HHHHhHhhccc
Q 002877 709 SVKPPILSCFGDIA--LAI---GVHF-EKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIF--EAYSGILQGFK 780 (872)
Q Consensus 709 ~~~~~~~~~l~~l~--~~~---~~~~-~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~l~ 780 (872)
..|..++.|+-.|+ ... |++- ..-++.+++.+...+-. +..+..+. -++..++...+
T Consensus 753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~g---------------d~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVG---------------DSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcc---------------cHHHHHHHHHHHHHHHHHHHh
Confidence 77888888887777 322 2211 11233333333332111 01222222 22223332222
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHH
Q 002877 781 SARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAG 860 (872)
Q Consensus 781 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~ 860 (872)
.. .-.+++..+++.+.-.+.. ..++++++|++.+.-++..++..-+. ++.+.+++.++. .+++....+|....
T Consensus 818 ~~---ld~~~l~~li~~V~~~L~s--~sreI~kaAI~fikvlv~~~pe~~l~-~~~~~LL~sll~-ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 818 NI---LDDETLEKLISMVCLYLAS--NSREIAKAAIGFIKVLVYKFPEECLS-PHLEELLPSLLA-LSHDHKIKVRKKVR 890 (1176)
T ss_pred cc---ccHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHcCCHHHHh-hhHHHHHHHHHH-HHHhhhHHHHHHHH
Confidence 11 1235567777777776665 57999999999999999999986543 343446666666 47788899999888
Q ss_pred HHHHHHHHH
Q 002877 861 WTQGMINRV 869 (872)
Q Consensus 861 ~~~~~~~~~ 869 (872)
.-+..+.+.
T Consensus 891 ~LlekLirk 899 (1176)
T KOG1248|consen 891 LLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHH
Confidence 888777664
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.60 E-value=4.3e-10 Score=124.95 Aligned_cols=400 Identities=9% Similarity=0.034 Sum_probs=245.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQ--QNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~--~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
+.++-..+.++|...|+.|-+.+-.... .+-..++...+..+.+ .+.++|+++-..+.+....
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~~------------- 98 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTARL------------- 98 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccc-------------
Confidence 4445555567788777777777766443 2445555666665554 5799999999999876432
Q ss_pred hcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhh
Q 002877 83 LAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCE 162 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 162 (872)
.++..--.-+.+.+-+.++|+.+|..+-..++.|-. | ...+.+++.+.+.+.+. ++-+|..|+.++..+..
T Consensus 99 ---~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~-~i~e~l~~~lkk~L~D~--~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 99 ---QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---S-SVLEYTLEPLRRAVADP--DPYVRKTAAMGLGKLFH 169 (746)
T ss_pred ---ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---H-HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Confidence 244444556778888999999999998888877643 2 25567788888999888 89999999999999887
Q ss_pred ccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHH
Q 002877 163 EISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAF 242 (872)
Q Consensus 163 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 242 (872)
.. ++.+ .-..+++.+...+.| .++.|...|+.+|..+....+..+.. .++ .+..+...+.+-++-.+..++
T Consensus 170 ~~-pelv---~~~~~~~~L~~LL~D--~dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~-~~~~Ll~~L~e~~EW~Qi~IL 240 (746)
T PTZ00429 170 DD-MQLF---YQQDFKKDLVELLND--NNPVVASNAAAIVCEVNDYGSEKIES--SNE-WVNRLVYHLPECNEWGQLYIL 240 (746)
T ss_pred hC-cccc---cccchHHHHHHHhcC--CCccHHHHHHHHHHHHHHhCchhhHH--HHH-HHHHHHHHhhcCChHHHHHHH
Confidence 65 4433 112244555566777 68899999999999875422111110 111 122233333322333344455
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhh
Q 002877 243 ECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSL 322 (872)
Q Consensus 243 ~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 322 (872)
+++.. ..|. -......++..+...+++.++.|...|+..+..+..... ....+..+..+
T Consensus 241 ~lL~~---y~P~-~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-----------------~~~~~~~~~rl 299 (746)
T PTZ00429 241 ELLAA---QRPS-DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-----------------QELIERCTVRV 299 (746)
T ss_pred HHHHh---cCCC-CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-----------------HHHHHHHHHHH
Confidence 55533 2121 122234566666677777788888888877766653210 12334444444
Q ss_pred HHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCcc
Q 002877 323 VPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTID 402 (872)
Q Consensus 323 ~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 402 (872)
.+.++..+.. + .+++..+...+..+....|..+.+. +..+--..+|+. .+|...+..+..++....
T Consensus 300 ~~pLv~L~ss-~---------~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N-- 365 (746)
T PTZ00429 300 NTALLTLSRR-D---------AETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSV-- 365 (746)
T ss_pred HHHHHHhhCC-C---------ccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCccc--
Confidence 4444444221 1 4577777777777777665444443 222222233444 467777777777775432
Q ss_pred chhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 002877 403 KLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIY 482 (872)
Q Consensus 403 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~ 482 (872)
+..++.-+.+...+.+..++..+..++|+++..++. .....+..|+..+.+...+...++..+.
T Consensus 366 -----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~-----------~a~~cV~~Ll~ll~~~~~~v~e~i~vik 429 (746)
T PTZ00429 366 -----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS-----------VAPDCANLLLQIVDRRPELLPQVVTAAK 429 (746)
T ss_pred -----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH-----------HHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 345566666666778888888888888888865543 4566667776666652223334566666
Q ss_pred HHHHhh
Q 002877 483 YLAQGY 488 (872)
Q Consensus 483 ~l~~~~ 488 (872)
.+.+.+
T Consensus 430 ~Ilrky 435 (746)
T PTZ00429 430 DIVRKY 435 (746)
T ss_pred HHHHHC
Confidence 666654
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.8e-12 Score=133.19 Aligned_cols=358 Identities=18% Similarity=0.278 Sum_probs=251.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCC
Q 002877 264 FELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSI 343 (872)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~ 343 (872)
.+.++....+.+......+...+..+...+.. +..-.-.-..++|.+...+...+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~----------------ppi~~vi~~G~v~~lV~~l~~~~~-------- 123 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERN----------------PPIDEVIQSGVVPRLVEFLSRDDN-------- 123 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCC----------------CCHHHHHHcCcHHHHHHHHccCCC--------
Confidence 44555556666766677776655555443220 112122223688888888763221
Q ss_pred cchhhhHHHHHHHHHhhcCCc---ch-hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHh-HH-hHHHHHHH
Q 002877 344 WNISMAGGTCLGLVARTVGDE---VV-PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPL-VH-AGFDFLLN 417 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~-~l~~~l~~ 417 (872)
..++..|+.+|..++....+. +. .-.+|.+...+.+++-.+++-|+++||.++.... ....+ +. .+++.++.
T Consensus 124 ~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~--~~Rd~vl~~g~l~pLl~ 201 (514)
T KOG0166|consen 124 PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP--DCRDYVLSCGALDPLLR 201 (514)
T ss_pred hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh--HHHHHHHhhcchHHHHH
Confidence 457888899999998765422 22 2357888899999999999999999999997652 23333 33 77888888
Q ss_pred hcCCCcH-HHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 418 AMRDENN-HVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSS 495 (872)
Q Consensus 418 ~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~ 495 (872)
.+..+.+ ...+.+.|+|++++..... ...-..+..+++.|...+.. ++.|..-|||++.++.++. .
T Consensus 202 ~l~~~~~~~~lRn~tW~LsNlcrgk~P------~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~------n 269 (514)
T KOG0166|consen 202 LLNKSDKLSMLRNATWTLSNLCRGKNP------SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS------N 269 (514)
T ss_pred HhccccchHHHHHHHHHHHHHHcCCCC------CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC------h
Confidence 8877776 6777889999999987742 24456788999999999998 9999999999999999774 2
Q ss_pred CCchhh-HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHHHHHHHHHHHhhhhcCcchhh
Q 002877 496 SLLSPY-LTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA-ELLPAIMGRLGQTLELQIVSSDDRE 573 (872)
Q Consensus 496 ~~l~~~-~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~ 573 (872)
+.+.-. -..+++.++..+...+ .+++..|+.+++.++.... ......+. ..+|.+...+.+.
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~---~~v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s------------ 333 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSS---PKVVTPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSS------------ 333 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCC---cccccHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccC------------
Confidence 223222 2478889999998544 4568899999999777655 33333333 4566666555531
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHH-HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhH--H
Q 002877 574 KQGDLQASLCGVLQVIIQKFSSTDATKSFILQTAD-QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMP--E 650 (872)
Q Consensus 574 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~--~ 650 (872)
....++..+|+++++|..+-.. .+...++ .+++.|+.++...+..+|..|.-++++++......-..|+- .
T Consensus 334 ~~~~ikkEAcW~iSNItAG~~~------qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g 407 (514)
T KOG0166|consen 334 PKESIKKEACWTISNITAGNQE------QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG 407 (514)
T ss_pred cchhHHHHHHHHHHHhhcCCHH------HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcC
Confidence 1223677899999999764443 4554444 79999999999999999999999999998766665556664 5
Q ss_pred HHHHHHhhhcccchHhHHHHHHHHHHHHHHHh
Q 002877 651 FYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 651 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 682 (872)
+++.+...|.-. +..+...++.+++.+-+..
T Consensus 408 iI~plcdlL~~~-D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 408 IIKPLCDLLTCP-DVKIILVALDGLENILKVG 438 (514)
T ss_pred CchhhhhcccCC-ChHHHHHHHHHHHHHHHHH
Confidence 788888888544 3446777777877776654
No 41
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.52 E-value=2.2e-10 Score=125.54 Aligned_cols=574 Identities=14% Similarity=0.118 Sum_probs=366.1
Q ss_pred HHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHH
Q 002877 97 LLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNA 176 (872)
Q Consensus 97 Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~ 176 (872)
++..+...+-..|.....-++.++...+++..-..++|++.+.+ .+ +..+...+..-++.++...+. ..+...
T Consensus 87 l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~--~dev~~~~a~~~~~~~~~v~~----~~~~~~ 159 (759)
T KOG0211|consen 87 LIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DD--EDEVLLDLAEQLGTFLPDVGG----PEYAHM 159 (759)
T ss_pred HhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cc--hhHHHHHHHHHhcccchhccc----hhHHHH
Confidence 33444445566677777778888877766545678899999988 55 677888888888877776532 455666
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhh-hh
Q 002877 177 VLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYY-EV 255 (872)
Q Consensus 177 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~ 255 (872)
+.+.+.....+ ....+|..++..+.......... ..+..+...+.....++-...|..+|..+.......+ +.
T Consensus 160 ll~~le~l~~~--eet~vr~k~ve~l~~v~~~~~~~----~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~ 233 (759)
T KOG0211|consen 160 LLPPLELLATV--EETGVREKAVESLLKVAVGLPKE----KLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDA 233 (759)
T ss_pred hhHHHHhhhHH--HHHHHHHHHHHHHHHHHHhcChH----HHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHH
Confidence 77777777766 45689999999999876543332 2234456666665555444456777888877665554 33
Q ss_pred hHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH-HhhHHHHHHHHhccc
Q 002877 256 LEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKAR-SSLVPMLLETLLKQE 334 (872)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~ 334 (872)
++. .+-+...+..++..+.+|..+..-+..++.... +... ..++|.+.....+
T Consensus 234 vk~---elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---------------------~~~~~s~v~~~~~~L~~D-- 287 (759)
T KOG0211|consen 234 VKR---ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---------------------SEIVKSEVLPTLIQLLRD-- 287 (759)
T ss_pred HHH---HHHHHHHhhccccchhhHHHHHhhhHHHHHHHH---------------------HHHHHhhccHHHhhhhhc--
Confidence 333 344445556688888999888776666665422 1111 1233443333221
Q ss_pred CCcccCCCCcchhhhHHHHHHHHHhhcC-C-cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHH
Q 002877 335 EDQDQDDSIWNISMAGGTCLGLVARTVG-D-EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGF 412 (872)
Q Consensus 335 ~d~~~d~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~ 412 (872)
++.++|.+|...+..+...+. + .....+.+.+.+...+.+|++|+........+....+++. .-.+..
T Consensus 288 -------dqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~---~~~~~~ 357 (759)
T KOG0211|consen 288 -------DQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA---TRTQLV 357 (759)
T ss_pred -------chhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc---Ccccch
Confidence 125799999999999998886 3 4555677778888889999999988877777776665322 123567
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC
Q 002877 413 DFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA 491 (872)
Q Consensus 413 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (872)
+.....++|....+|.++..-...+..+...+ .......+.+++.+-....| +..|+.+.+..+..+......
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~-----~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k- 431 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS-----CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK- 431 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcc-----cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc-
Confidence 78888899999999999999999888887752 22333455667877777777 888887776655444333210
Q ss_pred CCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcch
Q 002877 492 GPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDD 571 (872)
Q Consensus 492 ~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (872)
+. -+..++|..+..++ ++...||....+.+..+....+
T Consensus 432 ---~~----ti~~llp~~~~~l~---de~~~V~lnli~~ls~~~~v~~-------------------------------- 469 (759)
T KOG0211|consen 432 ---ER----TISELLPLLIGNLK---DEDPIVRLNLIDKLSLLEEVND-------------------------------- 469 (759)
T ss_pred ---Cc----CccccChhhhhhcc---hhhHHHHHhhHHHHHHHHhccC--------------------------------
Confidence 11 12222333333333 1223334333322222111111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHH
Q 002877 572 REKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF 651 (872)
Q Consensus 572 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i 651 (872)
.. .+..+.+..++.+...-.+..+.+|.+.+..+-.++...+..|. -+..
T Consensus 470 -----------------------v~-----g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~--~~~~ 519 (759)
T KOG0211|consen 470 -----------------------VI-----GISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF--DEKL 519 (759)
T ss_pred -----------------------cc-----cchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh--hHHH
Confidence 00 22223445566666665555678888877777777666552221 1224
Q ss_pred HHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhh
Q 002877 652 YQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEK 731 (872)
Q Consensus 652 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 731 (872)
-+.+...+.+. ..+++..|...+..++...| -.-+...+++.++....++ +.-.|...+.++..++..+|..+
T Consensus 520 ~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~ei-- 592 (759)
T KOG0211|consen 520 AELLRTWLPDH-VYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQEI-- 592 (759)
T ss_pred HHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhccHH--
Confidence 44444445443 45699999999999999998 3345567888888877766 68889999999999999999765
Q ss_pred hHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhH-HHHHHHHHHHhcCCCCCHh
Q 002877 732 YVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYA-QHLLQFIELIFKDNHRDEN 810 (872)
Q Consensus 732 ~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~il~~l~~~~~~~~~~~~ 810 (872)
+...++|.+..... |....+|-.++..+..+...+.. +-. ..+.+.+..+..| .+-+
T Consensus 593 ~~~~Llp~~~~l~~-------------D~vanVR~nvak~L~~i~~~L~~-------~~~~~~v~pll~~L~~d--~~~d 650 (759)
T KOG0211|consen 593 TCEDLLPVFLDLVK-------------DPVANVRINVAKHLPKILKLLDE-------SVRDEEVLPLLETLSSD--QELD 650 (759)
T ss_pred HHHHHhHHHHHhcc-------------CCchhhhhhHHHHHHHHHhhcch-------HHHHHHHHHHHHHhccC--cccc
Confidence 34555555555321 12246787777777777666542 223 5566666666443 7889
Q ss_pred HHHHHHHHHHHHHhhh
Q 002877 811 VTKAAVAVMGDLADAL 826 (872)
Q Consensus 811 ~~~~a~~~l~~l~~~~ 826 (872)
+|-.|..+++.+....
T Consensus 651 vr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 651 VRYRAILAFGSIELSR 666 (759)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999888888765543
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.47 E-value=1e-09 Score=120.48 Aligned_cols=538 Identities=15% Similarity=0.134 Sum_probs=348.7
Q ss_pred HHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchH-HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhH
Q 002877 96 LLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPE-LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEV 174 (872)
Q Consensus 96 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~-ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~ 174 (872)
.+-+.. ..+..++..++.-++.+....+.. .+.. +++.+....... ...+|+.++..+..++.....+ ...
T Consensus 125 f~~e~~-~~~dev~~~~a~~~~~~~~~v~~~-~~~~~ll~~le~l~~~e--et~vr~k~ve~l~~v~~~~~~~----~~~ 196 (759)
T KOG0211|consen 125 FLTEAE-DDEDEVLLDLAEQLGTFLPDVGGP-EYAHMLLPPLELLATVE--ETGVREKAVESLLKVAVGLPKE----KLR 196 (759)
T ss_pred HHHHhc-cchhHHHHHHHHHhcccchhccch-hHHHHhhHHHHhhhHHH--HHHHHHHHHHHHHHHHHhcChH----HHH
Confidence 333444 456778888888888887665432 3333 333444444444 4568999999999888876322 224
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYE 254 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 254 (872)
..+++.+...... ..-.-|..+...+........++. .+..+.+...++.++..+.+|..+..-+..++...+.
T Consensus 197 ~~lv~l~~~l~~~--d~~~sr~sacglf~~~~~~~~~~~----vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~ 270 (759)
T KOG0211|consen 197 EHLVPLLKRLATG--DWFQSRLSACGLFGKLYVSLPDDA----VKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES 270 (759)
T ss_pred HHHHHHHHHccch--hhhhcchhhhhhhHHhccCCChHH----HHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH
Confidence 5555555554443 122344555555555443332211 2233667777888899999999999999998876655
Q ss_pred hhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhccc
Q 002877 255 VLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQE 334 (872)
Q Consensus 255 ~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 334 (872)
. .-...+.+.......|+.+.+|..|++....+.+.-.. . .+....+.+.+++..
T Consensus 271 ~--~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~----------------~---~d~~~~~~~~l~~~~---- 325 (759)
T KOG0211|consen 271 E--IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD----------------D---DDVVKSLTESLVQAV---- 325 (759)
T ss_pred H--HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC----------------c---hhhhhhhhHHHHHHh----
Confidence 2 11223555566666778888999999877777664210 0 012223444444322
Q ss_pred CCcccCCCCcchhhhHHHHHHHHHhhcCC-cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCcc-chhHhHHhHH
Q 002877 335 EDQDQDDSIWNISMAGGTCLGLVARTVGD-EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTID-KLAPLVHAGF 412 (872)
Q Consensus 335 ~d~~~d~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~-~~~~~l~~l~ 412 (872)
+ +..|.+|...++....+...++. ...+...+.....+.+..|..|.+...-...+....... ...-....++
T Consensus 326 ~-----d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~il 400 (759)
T KOG0211|consen 326 E-----DGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSIL 400 (759)
T ss_pred c-----ChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhh
Confidence 1 13499999988888888888874 445566788888888999999998876666665544311 1111234668
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC
Q 002877 413 DFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA 491 (872)
Q Consensus 413 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (872)
|.+.....|.++.||.+.+..+..+...++. ...++.+++.+...++| .+.|+....+.+..+-....
T Consensus 401 p~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k---------~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~-- 469 (759)
T KOG0211|consen 401 PEVQVLVLDNALHVRSALASVITGLSPILPK---------ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVND-- 469 (759)
T ss_pred HHHHHHHhcccchHHHHHhccccccCccCCc---------CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccC--
Confidence 9999999999999999888877666655543 34566777888888888 89999888876644443332
Q ss_pred CCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcch
Q 002877 492 GPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDD 571 (872)
Q Consensus 492 ~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (872)
...+..+-+..+|.+..... + ....+|.+..+.+-.+....+ .+++...+..++..|-
T Consensus 470 ---v~g~~~~s~slLp~i~el~~--d-~~wRvr~ail~~ip~la~q~~----~~~~~~~~~~l~~~~l------------ 527 (759)
T KOG0211|consen 470 ---VIGISTVSNSLLPAIVELAE--D-LLWRVRLAILEYIPQLALQLG----VEFFDEKLAELLRTWL------------ 527 (759)
T ss_pred ---cccchhhhhhhhhhhhhhcc--c-hhHHHHHHHHHHHHHHHHhhh----hHHhhHHHHHHHHhhh------------
Confidence 23344555666666666554 2 245667777777777776555 2333333333333221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHH
Q 002877 572 REKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF 651 (872)
Q Consensus 572 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i 651 (872)
.+....++..+...+..++..+|. .. +...+++.++....+++...|...+.++..++..+|..+ +-..+
T Consensus 528 ~d~v~~Ir~~aa~~l~~l~~~~G~------~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~L 597 (759)
T KOG0211|consen 528 PDHVYSIREAAARNLPALVETFGS------EW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDL 597 (759)
T ss_pred hhhHHHHHHHHHHHhHHHHHHhCc------ch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHH
Confidence 123456788888999999999885 33 345677777777777778899999999999999998765 34577
Q ss_pred HHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhh
Q 002877 652 YQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAI 725 (872)
Q Consensus 652 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~ 725 (872)
+|.+.....+. .+.||..++..+..+....... ..-..+.|.+.....++ +.++|-.+..+++.+....
T Consensus 598 lp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~~--~~~~~v~pll~~L~~d~--~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 598 LPVFLDLVKDP-VANVRINVAKHLPKILKLLDES--VRDEEVLPLLETLSSDQ--ELDVRYRAILAFGSIELSR 666 (759)
T ss_pred hHHHHHhccCC-chhhhhhHHHHHHHHHhhcchH--HHHHHHHHHHHHhccCc--ccchhHHHHHHHHHHHHHH
Confidence 88887766654 5679999999999988776421 11124445444444455 7889999999998887654
No 43
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.3e-08 Score=105.76 Aligned_cols=615 Identities=14% Similarity=0.132 Sum_probs=320.0
Q ss_pred CChhHhhHHHHHHHHHHHhh-cCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHH
Q 002877 104 PVPEARHTSAQVIAKIASIE-IPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVV 182 (872)
Q Consensus 104 ~~~~vr~~~~~~l~~i~~~~-~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~ 182 (872)
.++..|..+|.+++....+. +- .....++..++.+-+....+.....+.+..+..+++....+.. .++....+..+-
T Consensus 187 ~~~~~r~~aalllsk~~sR~D~~-~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~-l~~~~~~~r~L~ 264 (1133)
T KOG1943|consen 187 SSGILRRSAALLLSKLFSRTDVK-DLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDL-LPYSDTGLRMLS 264 (1133)
T ss_pred ccchhHHHHHHHHHHHcccccHH-HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhh-HHHhhhhhHhhc
Confidence 34589999999999988553 11 1122333333333333211112345677777777777653434 455555555554
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHH-HHH----------------hhh-----------------hh-h---hHHHHHHH
Q 002877 183 QGMNLAEHSAEVRLAATRALYNALD-FAL----------------TNF-----------------QN-E---MERNYIMK 224 (872)
Q Consensus 183 ~~l~~~~~~~~vr~~al~~l~~~~~-~~~----------------~~~-----------------~~-~---~~~~~ll~ 224 (872)
..-.+++...-+|+.-+|+...+-- .++ .++ +. + .....++.
T Consensus 265 ~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie 344 (1133)
T KOG1943|consen 265 VCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIE 344 (1133)
T ss_pred ccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHH
Confidence 4444332224566666666653210 000 000 00 0 01223666
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC-CChHHHHHHHHhHhHHhHhhhhhhhhcCCC
Q 002877 225 VVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG-DEEAVALQAVEFWSSICDEEIELQEFENPE 303 (872)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 303 (872)
.+...+.+.+..+|-.+++.++.+....|..+..+ ++.-++..+.. ++++.=+.++-++..++....
T Consensus 345 ~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~---vi~svid~~~p~e~~~aWHgacLaLAELA~rGl--------- 412 (1133)
T KOG1943|consen 345 HLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ---VIGSVIDLFNPAEDDSAWHGACLALAELALRGL--------- 412 (1133)
T ss_pred HHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH---HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC---------
Confidence 67777788888899999999999888887554432 33322222222 233333455544545544311
Q ss_pred CCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcc
Q 002877 304 TGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWR 383 (872)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 383 (872)
.....++.++|.+.+.+.+++ +.. . .+..-.
T Consensus 413 ----------Llps~l~dVvplI~kaL~Yd~------------~~G------~---------------------~s~G~~ 443 (1133)
T KOG1943|consen 413 ----------LLPSLLEDVVPLILKALHYDV------------RRG------Q---------------------HSVGQH 443 (1133)
T ss_pred ----------cchHHHHHHHHHHHHHhhhhh------------hhc------c---------------------cccccc
Confidence 223345567777776655321 110 0 022346
Q ss_pred hHHHHHHHHHHhhcCCCccchhHhHHhHHHHH-HHhcCCCcHHHHHHHHHHHHHHHhhccCCCCC---------------
Q 002877 384 CREAATYAFGSVLEGPTIDKLAPLVHAGFDFL-LNAMRDENNHVKDTTAWTLSRIFELLHCPATG--------------- 447 (872)
Q Consensus 384 ~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------------- 447 (872)
+|.+|++..-+++....+..++|++..+.+.+ ...+-|++..+|++|.-++.......++--.|
T Consensus 444 VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~r 523 (1133)
T KOG1943|consen 444 VRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNR 523 (1133)
T ss_pred hHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhh
Confidence 89999999999998888888999888787754 45678999999999999887666554431000
Q ss_pred ---------ccccCcccHHHHHHHHHHH-hhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHHHhhcc
Q 002877 448 ---------FSVISPENLQRILTVLLES-IKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLS-PYLTSIIAELLRAADR 515 (872)
Q Consensus 448 ---------~~~~~~~~~~~~l~~l~~~-l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~~~~il~~l~~~l~~ 515 (872)
+......|...+++.++.. +.. ++.+|+.+.++|..+.... ++.+. -+++++++ ...+
T Consensus 524 sNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~------pk~~a~~~L~~lld----~~ls 593 (1133)
T KOG1943|consen 524 SNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE------PKYLADYVLPPLLD----STLS 593 (1133)
T ss_pred hhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh------HHhhcccchhhhhh----hhcC
Confidence 0111234556666666654 445 7778888888888876654 43333 23333333 3322
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCC
Q 002877 516 TDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSS 595 (872)
Q Consensus 516 ~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 595 (872)
.+...|+..+-+.+.++.... . .. |.+...-.+. +..
T Consensus 594 ---~~~~~r~g~~la~~ev~~~~~-~-l~-------~~~~~l~e~~---------------------i~~---------- 630 (1133)
T KOG1943|consen 594 ---KDASMRHGVFLAAGEVIGALR-K-LE-------PVIKGLDENR---------------------IAG---------- 630 (1133)
T ss_pred ---CChHHhhhhHHHHHHHHHHhh-h-hh-------hhhhhhHHHH---------------------hhh----------
Confidence 224457777777777765543 1 00 0000000000 000
Q ss_pred CccchhhchhhHHHHHHHHHHH-HccC-ChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHH
Q 002877 596 TDATKSFILQTADQIMVLFLRV-FACR-SSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITV 672 (872)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~l~~~-l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~ 672 (872)
..++++.+... +... ..-++......+..+..+-...+..++ ......+.+.++.. ..+|..|.
T Consensus 631 -----------l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~--n~i~~~av 697 (1133)
T KOG1943|consen 631 -----------LLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP--NQIRDAAV 697 (1133)
T ss_pred -----------hhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch--HHHHHHHH
Confidence 00001101100 0000 011222222222222211111111111 12223333333322 26899999
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhH-HHHHHHHHHHHHhccccC
Q 002877 673 GVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYV-PHALQMMQEAAKACAQLD 751 (872)
Q Consensus 673 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~~~~~~~~~ 751 (872)
+.+++++..+-..=......++...+..+.+.. +..+|.....++|.+.... ..-.+ +.+...++.. .++
T Consensus 698 ~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~-~~~~r~g~~lal~~lp~~~---i~~~~q~~lc~~~l~~-----~p~ 768 (1133)
T KOG1943|consen 698 SAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS-EERIRRGLILALGVLPSEL---IHRHLQEKLCKLVLEL-----LPS 768 (1133)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch-HHHHHHHHHHHHccCcHHh---hchHHHHHHHHHHhcc-----Ccc
Confidence 999999877631101111146666666666552 3344555555666544321 11111 1111111111 111
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhHhhccchh-hhhhhhhhHHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHHHHhhhCc
Q 002877 752 MEDEELIDYGNQLRSSIFEAYSGILQGFKSA-RAEVMMPYAQHLLQFIELIFKDNH--RDENVTKAAVAVMGDLADALGP 828 (872)
Q Consensus 752 ~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~il~~l~~~~~~~~--~~~~~~~~a~~~l~~l~~~~~~ 828 (872)
| +..+-|...+.++..++...... .+..+..+.+.+++.+.....|.. -..-||++|+..+.++...+..
T Consensus 769 --d-----~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~ 841 (1133)
T KOG1943|consen 769 --D-----AWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS 841 (1133)
T ss_pred --c-----ccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC
Confidence 1 22345666677777777766633 455566777888888877655543 3456899999999999888875
Q ss_pred chhhhccCchHHHHHHHHHhcC---CcHHHHHHHHHHHHHH
Q 002877 829 NTKLLFKDSSFCNDFMSECLRS---DDEQLKETAGWTQGMI 866 (872)
Q Consensus 829 ~~~~~~~~~~~v~~ll~~~~~~---~~~~~~~~a~~~~~~~ 866 (872)
+. ++.++.+++.+...++. ...+.|..|+-++.++
T Consensus 842 p~---~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 842 PK---LLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred cc---cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 32 46677777777765554 3445566666665543
No 44
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4.3e-09 Score=110.78 Aligned_cols=496 Identities=18% Similarity=0.176 Sum_probs=312.8
Q ss_pred HHHhhcCC-ChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHH
Q 002877 97 LLRTLASP-VPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVN 175 (872)
Q Consensus 97 Ll~~l~~~-~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~ 175 (872)
|.+.|.+. +...+.+.-.+++.||+.. .-.+++|..+....+. +.++++-.-.-|-+.+++- ++.- .
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVask--n~EVKkLVyvYLlrYAEeq-pdLA-L---- 107 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASK--NIEVKKLVYVYLLRYAEEQ-PDLA-L---- 107 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhcc--CHHHHHHHHHHHHHHhhcC-CCce-e----
Confidence 44555553 4556677778888888654 5788999999999988 8888776666666667664 3321 0
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhh
Q 002877 176 AVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEV 255 (872)
Q Consensus 176 ~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (872)
--+..+.+.|.| ++..+|..|++++.++= .....++++-++.++..|+.+-+|+.|...+..+-+..++.
T Consensus 108 LSIntfQk~L~D--pN~LiRasALRvlSsIR--------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 108 LSINTFQKALKD--PNQLIRASALRVLSSIR--------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred eeHHHHHhhhcC--CcHHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence 023456788988 89999999999999852 11223567888889999999999999999998886654433
Q ss_pred hHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccC
Q 002877 256 LEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEE 335 (872)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 335 (872)
- .++.+.+-..+.|..+-+.-.|.-....+|-...+ ++.+++..+-..+ ...
T Consensus 178 k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld------------------LIHknyrklC~ll----~dv-- 229 (968)
T KOG1060|consen 178 K----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD------------------LIHKNYRKLCRLL----PDV-- 229 (968)
T ss_pred H----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH------------------HhhHHHHHHHhhc----cch--
Confidence 2 24444444556777777777777666677765332 3344444333332 211
Q ss_pred CcccCCCCcchhhhHHHHHHHHHhh-cCCcchhchHH-HHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHH
Q 002877 336 DQDQDDSIWNISMAGGTCLGLVART-VGDEVVPLVMP-FVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413 (872)
Q Consensus 336 d~~~d~~~~~~r~~a~~~l~~l~~~-~~~~~~~~l~~-~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~ 413 (872)
|+ |.--.. ...|.+-++. +++ |.... .+...-.+.+-....+ ..-.|....+-++-++.
T Consensus 230 ----de--WgQvvl-I~mL~RYAR~~l~~---P~~~~~~~e~n~~~~~~~~~~~---------~~~~P~~~d~D~~lLL~ 290 (968)
T KOG1060|consen 230 ----DE--WGQVVL-INMLTRYARHQLPD---PTVVDSSLEDNGRSCNLKDKYN---------EIRTPYVNDPDLKLLLQ 290 (968)
T ss_pred ----hh--hhHHHH-HHHHHHHHHhcCCC---ccccccccccCccccccccccc---------ccCCCcccCccHHHHHH
Confidence 22 864433 2223332322 121 11111 1111111111111000 00112223344556666
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCC
Q 002877 414 FLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGP 493 (872)
Q Consensus 414 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~ 493 (872)
..-.++...++.|..+++.+.-.++. ......+..+|+..|..++.++.-....+..++...
T Consensus 291 stkpLl~S~n~sVVmA~aql~y~lAP-------------~~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~----- 352 (968)
T KOG1060|consen 291 STKPLLQSRNPSVVMAVAQLFYHLAP-------------KNQVTKIAKALVRLLRSNREVQYVVLQNIATISIKR----- 352 (968)
T ss_pred hccHHHhcCCcHHHHHHHhHHHhhCC-------------HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcc-----
Confidence 66667788899999999888766652 235677889999988888888888888888888765
Q ss_pred CCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhh
Q 002877 494 SSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDRE 573 (872)
Q Consensus 494 ~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 573 (872)
+..+.||+.... +. ..+...++..=++.|+.++.... ...+++.+...+.. .|+
T Consensus 353 -~~lF~P~lKsFf------v~--ssDp~~vk~lKleiLs~La~esn-------i~~ILrE~q~YI~s---------~d~- 406 (968)
T KOG1060|consen 353 -PTLFEPHLKSFF------VR--SSDPTQVKILKLEILSNLANESN-------ISEILRELQTYIKS---------SDR- 406 (968)
T ss_pred -hhhhhhhhhceE------ee--cCCHHHHHHHHHHHHHHHhhhcc-------HHHHHHHHHHHHhc---------Cch-
Confidence 556666654321 11 22334556677788888887654 22233333333321 121
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHH
Q 002877 574 KQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQ 653 (872)
Q Consensus 574 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~ 653 (872)
.+...+..+++-++...+. ..+.+++.|+.++.+.+..|...+...+..+...-+.....++.+
T Consensus 407 ---~faa~aV~AiGrCA~~~~s----------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~--- 470 (968)
T KOG1060|consen 407 ---SFAAAAVKAIGRCASRIGS----------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQ--- 470 (968)
T ss_pred ---hHHHHHHHHHHHHHHhhCc----------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHH---
Confidence 2445667888888877776 557899999999999999999999999999988776554444433
Q ss_pred HHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccc
Q 002877 654 YLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVH 728 (872)
Q Consensus 654 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 728 (872)
|...+.+..-+.-|...+|++|..+...+ ...++++..+.+.+.+. ..++|-.++..-..+-....++
T Consensus 471 -La~lldti~vp~ARA~IiWLige~~e~vp----ri~PDVLR~laksFs~E--~~evKlQILnL~aKLyl~~~~~ 538 (968)
T KOG1060|consen 471 -LARLLDTILVPAARAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFSDE--GDEVKLQILNLSAKLYLTNIDQ 538 (968)
T ss_pred -HHHHhhhhhhhhhhceeeeeehhhhhhcc----hhchHHHHHHHHhhccc--cchhhHHHHHhhhhheEechhh
Confidence 33333444445678888999999887643 34577788888888777 7888988888777765544444
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.6e-07 Score=99.67 Aligned_cols=452 Identities=13% Similarity=0.152 Sum_probs=255.5
Q ss_pred hhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhccCC
Q 002877 366 VPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE-NNHVKDTTAWTLSRIFELLHCP 444 (872)
Q Consensus 366 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~ 444 (872)
++.++..+.+.+++.+..+|..|...++.++.... .....+++..++..+.-- .+..-..+|.+++.++..--
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp----~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl-- 412 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP----PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL-- 412 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc----HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC--
Confidence 34556667778888999999999999999998763 223446666666655322 24556689999998885332
Q ss_pred CCCccccCcccHHHHHHHHHHHhh-c--------ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhcc
Q 002877 445 ATGFSVISPENLQRILTVLLESIK-D--------APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADR 515 (872)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~l~~~l~-d--------~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~ 515 (872)
..+..++.+++.+++.+. + ...||.+||+....+...++ ++.+.|++..+...++...-
T Consensus 413 ------Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays-----~~~l~p~l~~L~s~LL~~Al- 480 (1133)
T KOG1943|consen 413 ------LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS-----PSDLKPVLQSLASALLIVAL- 480 (1133)
T ss_pred ------cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC-----hhhhhHHHHHHHHHHHHHHh-
Confidence 244577889998888875 1 35799999999999999986 88899999988888876442
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCCCc----c---cHHHHHH--------HHHHHHHHHHH---HHhhhhcCcchhhhHHH
Q 002877 516 TDVGGSKLRSAAYETLNEVVRCSNIT----E---TSQIIAE--------LLPAIMGRLGQ---TLELQIVSSDDREKQGD 577 (872)
Q Consensus 516 ~~~~~~~vr~~a~~al~~l~~~~~~~----~---~~~~~~~--------l~~~l~~~l~~---~~~~~~~~~~~~~~~~~ 577 (872)
.| .+.++|++|..|+...+...+.- + ..+|+.- -++..+..+.. .+-++....+--.....
T Consensus 481 FD-revncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 481 FD-REVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred cC-chhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHH
Confidence 24 45778999999999999875500 0 0111110 00000000000 00001111111233445
Q ss_pred HHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHH--Hh-hhH-----
Q 002877 578 LQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEF--AK-YMP----- 649 (872)
Q Consensus 578 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~--~~-~l~----- 649 (872)
++..+..+|..+...-++ .+. ...++.++......+...|..+..+.+.++.+....- .+ ..+
T Consensus 560 irelaa~aL~~Ls~~~pk------~~a---~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPK------YLA---DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred HHHHHHHHHHHHHHhhHH------hhc---ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 677777888876554444 222 2345556666677788899998888888876553211 11 111
Q ss_pred --HHHHHHHhhhccc-chHhHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhh
Q 002877 650 --EFYQYLQMGLQNS-EEYQVCAITVGVVGDVCRALDDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAI 725 (872)
Q Consensus 650 --~i~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~ 725 (872)
.++|.+...-.+. ...-++...+.++..+..+-..-+..++ ...-..+.+.+.. +..+|..+..++++++..+
T Consensus 631 l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~---~n~i~~~av~av~~l~s~y 707 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL---PNQIRDAAVSAVSDLVSTY 707 (1133)
T ss_pred hhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHH
Confidence 2233332211111 1112444455555444333221111111 1122223333322 3378899999999999875
Q ss_pred ccchhhhHH-HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHH-HHHHHHhc
Q 002877 726 GVHFEKYVP-HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLL-QFIELIFK 803 (872)
Q Consensus 726 ~~~~~~~l~-~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il-~~l~~~~~ 803 (872)
-.. .++.. .++...+..+.... ...+|. ++..+++...++.+....+..+ +.+.....
T Consensus 708 ~~~-d~~~~~~li~~~ls~~~~~~------------~~~~r~-------g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p 767 (1133)
T KOG1943|consen 708 VKA-DEGEEAPLITRYLSRLTKCS------------EERIRR-------GLILALGVLPSELIHRHLQEKLCKLVLELLP 767 (1133)
T ss_pred Hhc-CchhhhHHHHHHHHHhcCch------------HHHHHH-------HHHHHHccCcHHhhchHHHHHHHHHHhccCc
Confidence 211 11111 23333333332210 011222 2222333223334444444443 33322221
Q ss_pred CCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 002877 804 DNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMINRVL 870 (872)
Q Consensus 804 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 870 (872)
. +...+-|+..+..+..++.+.+..... .-.+.+...+++.+-++......+...|.+.-.++-+
T Consensus 768 ~-d~~a~aR~~~V~al~~v~~~~~~~~~~-~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al 832 (1133)
T KOG1943|consen 768 S-DAWAEARQQNVKALAHVCKTVTSLLFS-ESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKAL 832 (1133)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHH
Confidence 1 125678889999999999999843222 2335688899997555567777788889888766543
No 46
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.1e-07 Score=103.34 Aligned_cols=503 Identities=16% Similarity=0.195 Sum_probs=265.1
Q ss_pred hHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 4 EITQFLLAAQSA--DANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 4 ~~~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
++..++....+| +++.|.+|.+.+.+++.. ++.|.....+|..+ ..+.+|++|.++|-+.++ .+
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~--~~~~~~~~~iL~~s-~~~~~k~f~Lqlle~vik-----------~~ 76 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEE--PDSWLQVYLILKLS-TNPILKYFALQLLENVIK-----------FR 76 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhC--cchHHHHHHHHhcc-CCchhheeeHHHHHHHHH-----------Hh
Confidence 456666666666 678999999999999998 88888888888874 689999999999999885 57
Q ss_pred hhcCChHHHHHHHHHHHHhhcC--C-------ChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHH
Q 002877 82 WLAIDISYKSQVKDLLLRTLAS--P-------VPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQA 152 (872)
Q Consensus 82 w~~l~~~~~~~i~~~Ll~~l~~--~-------~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~ 152 (872)
|..++.+.+..+|...+..... + ...++.+++.++..|+++++|. .||++++.+.+.+.. ++..++.
T Consensus 77 W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~-~wp~~i~dl~~~s~~---s~~~~el 152 (1041)
T KOG2020|consen 77 WNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPA-IWPTFIPDLAQSSKT---SETVCEL 152 (1041)
T ss_pred cccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHh-hcchhhhhHHHHhhc---CcccchH
Confidence 8889999999999988875432 1 2457899999999999999995 999999999998875 4666777
Q ss_pred HHHHHHHhhhccC---cccc---chhhHHHHH---------------------------HHHHhcccC------------
Q 002877 153 TLETLGYVCEEIS---HQDL---VQDEVNAVL---------------------------TAVVQGMNL------------ 187 (872)
Q Consensus 153 al~~l~~l~~~~~---~~~l---~~~~~~~l~---------------------------~~l~~~l~~------------ 187 (872)
++.++..+.+++. ...+ ...+++..+ +.+...+..
T Consensus 153 ~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~tn~l 232 (1041)
T KOG2020|consen 153 SMIILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFETNIL 232 (1041)
T ss_pred HHHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHhhhH
Confidence 7777777777643 0000 001111111 011111111
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHHHHhhhhhh---hHHHHH--HHHHHHhhc---------CCcH-HHHHHHHHHHH
Q 002877 188 ------AEHSAEVRLAATRALYNALDFALTNFQNE---MERNYI--MKVVCETAK---------SKEV-EIRQAAFECLV 246 (872)
Q Consensus 188 ------~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~l--l~~l~~~~~---------~~~~-~~~~~~~~~l~ 246 (872)
.-..++.|..+++||..++.......... .....+ +..+...+. ..+. ..-..-+..+.
T Consensus 233 ~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~ 312 (1041)
T KOG2020|consen 233 ELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLS 312 (1041)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHH
Confidence 00136777788888877765432211110 000000 112222211 1112 22333444455
Q ss_pred HHHHhhhhhhHH-------hHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhh----hhhcCCCCC--CCCCCc--
Q 002877 247 SIASTYYEVLEP-------YMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIEL----QEFENPETG--DSDSPN-- 311 (872)
Q Consensus 247 ~l~~~~~~~~~~-------~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~----~~~~~~~~~--~~~~~~-- 311 (872)
.+.+.+...+.. ++......+.....++..-.+. +++.|..+....... .....+..+ .-.+..
T Consensus 313 ~f~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~r 391 (1041)
T KOG2020|consen 313 LFFEQHIALLESSLSQRPVLLEALLELILISTIEPSEIFKI-CLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFR 391 (1041)
T ss_pred HHHHHHHHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHhhhcccccccccccccccccchhccchH
Confidence 555444433332 1112222232223334444455 999999998874432 100010000 000000
Q ss_pred hHHHHHhHHhhHHHHHHHHhcccCCcc-c------------CCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhcc
Q 002877 312 YHFIEKARSSLVPMLLETLLKQEEDQD-Q------------DDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIV 378 (872)
Q Consensus 312 ~~~~~~~l~~l~~~l~~~l~~~~~d~~-~------------d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 378 (872)
.+....++...--..+..|.++++-.- + |.+...+.....+.+...+...+......+.+.+...+.
T Consensus 392 k~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~ 471 (1041)
T KOG2020|consen 392 KSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLD 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhh
Confidence 112233444444445555555443110 0 111111222222222222222221111122222333333
Q ss_pred CC--CcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhccC-CCCCccc
Q 002877 379 KS--DWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM-----RDENNHVKDTTAWTLSRIFELLHC-PATGFSV 450 (872)
Q Consensus 379 ~~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l-----~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~ 450 (872)
.. +|.....-++++++++....++..+..+..++.-++... +|.. +..++++.-..+. +.| ..
T Consensus 472 ~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~-------avi~~Ni~~vv~q~p~F--l~ 542 (1041)
T KOG2020|consen 472 GDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNK-------AVIASNIMYVVGQYPRF--LK 542 (1041)
T ss_pred HHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-------hHHHHHHHHHhcccchH--HH
Confidence 33 355556667777766553332323333333333332222 2211 2233333332221 000 00
Q ss_pred cCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC--CCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHH
Q 002877 451 ISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA--GPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAA 527 (872)
Q Consensus 451 ~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 527 (872)
.....++.....+...+.. +..|+..+|..+..++..+... -.+.....|+...++..+...+.... ...++..
T Consensus 543 ~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~---~~q~~~~ 619 (1041)
T KOG2020|consen 543 AHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQ---PQQRHTF 619 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCch---HHHHHHH
Confidence 1123334455556666666 7779999999888888765421 11244566788888888777776333 4458888
Q ss_pred HHHHHHHHhc
Q 002877 528 YETLNEVVRC 537 (872)
Q Consensus 528 ~~al~~l~~~ 537 (872)
+++++.++..
T Consensus 620 ~~al~~~V~~ 629 (1041)
T KOG2020|consen 620 YEALGLMVSA 629 (1041)
T ss_pred HHHHHHHHHH
Confidence 8999854443
No 47
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.35 E-value=1.2e-11 Score=116.59 Aligned_cols=315 Identities=12% Similarity=0.162 Sum_probs=205.3
Q ss_pred HHHHHhhcc-CCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 370 MPFVEANIV-KSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 370 ~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
.|-+.+++. ++.--....|.+++..++++.. ...+-.++ ..+|.+++.|.+++..||+.+.|+||+++.-...
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt-~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~---- 190 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTT-QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG---- 190 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcc-cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh----
Confidence 455555553 2332334567799999999875 43333333 7789999999999999999999999999864432
Q ss_pred ccccCcccH--HHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchh
Q 002877 448 FSVISPENL--QRILTVLLESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSK 522 (872)
Q Consensus 448 ~~~~~~~~~--~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~ 522 (872)
..+|+ ...++.++..+.+ +-..-..+.|.|+++|+.-. |..--..+...+|.|.+.+...| ..
T Consensus 191 ----~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn-----P~P~w~~isqalpiL~KLiys~D---~e 258 (526)
T COG5064 191 ----CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN-----PPPDWSNISQALPILAKLIYSRD---PE 258 (526)
T ss_pred ----HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC-----CCCchHHHHHHHHHHHHHHhhcC---HH
Confidence 23333 2345556655554 44666788999999998753 33334567788888988887555 56
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHH-HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchh
Q 002877 523 LRSAAYETLNEVVRCSNITETSQIIA-ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKS 601 (872)
Q Consensus 523 vr~~a~~al~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 601 (872)
+...|++|++.+..... +.....++ .+.+.+++.|.. +...++.-++..+++++.+-... ++
T Consensus 259 vlvDA~WAiSYlsDg~~-E~i~avld~g~~~RLvElLs~-------------~sa~iqtPalR~vGNIVTG~D~Q--Tq- 321 (526)
T COG5064 259 VLVDACWAISYLSDGPN-EKIQAVLDVGIPGRLVELLSH-------------ESAKIQTPALRSVGNIVTGSDDQ--TQ- 321 (526)
T ss_pred HHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHHHHHhcC-------------ccccccCHHHHhhcCeeecCccc--ee-
Confidence 68899999999987654 33333333 234444444432 11223344555666665433221 00
Q ss_pred hchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhH-HHHHHHHhhhcccchHhHHHHHHHHHHHHHH
Q 002877 602 FILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMP-EFYQYLQMGLQNSEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 602 ~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 680 (872)
.+.. -..++.+..+|+++...+|..+.-.++++.....+++...++ +++|.|...+... +..++..|||+++....
T Consensus 322 viI~--~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNats 398 (526)
T COG5064 322 VIIN--CGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATS 398 (526)
T ss_pred hhee--cccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhc
Confidence 0000 134566667788888899999999999987766666655554 6889998888764 45689999999988765
Q ss_pred Hhc--CCccccH--HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 002877 681 ALD--DKVLPFC--DGIMSLLLNALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 681 ~~~--~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
..- .+...|+ ..++..|+..|.-. +..+-+.++.|+..+..
T Consensus 399 gg~~~PD~iryLv~qG~IkpLc~~L~~~--dNkiiev~LD~~eniLk 443 (526)
T COG5064 399 GGLNRPDIIRYLVSQGFIKPLCDLLDVV--DNKIIEVALDAIENILK 443 (526)
T ss_pred cccCCchHHHHHHHccchhHHHHHHhcc--CccchhhhHHHHHHHHh
Confidence 432 2333443 34566777777655 56677777888887765
No 48
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.6e-06 Score=91.08 Aligned_cols=686 Identities=13% Similarity=0.137 Sum_probs=363.0
Q ss_pred HHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhh-ccCc--c--
Q 002877 93 VKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCE-EISH--Q-- 167 (872)
Q Consensus 93 i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~-~~~~--~-- 167 (872)
+-+.|.+.+ ++++.+|+.+-+++...... .+++- .+++.+..++.++..|.+|...+...++ .|.+ +
T Consensus 7 l~~~l~qTl-~pdps~rk~aEr~L~~~e~q----~~y~l---~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 7 LANYLLQTL-SPDPSVRKPAERALRSLEGQ----QNYPL---LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred HHHHHHhcC-CCCCccCchHHHHHHHhccC----CCchH---HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 333444443 36788999999988776533 13443 4455554543357789999999998888 4542 1
Q ss_pred -ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 002877 168 -DLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLV 246 (872)
Q Consensus 168 -~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~ 246 (872)
.+.....+.+-..+...+-+ ....++..--++++.+.. .+|.. -.+.+++-+...+++.|-.+-.+++..-.
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~--s~~~iQ~qlseal~~Ig~---~DFP~--kWptLl~dL~~~ls~~D~~~~~gVL~tah 151 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLS--SPFNIQKQLSEALSLIGK---RDFPD--KWPTLLPDLVARLSSGDFNVINGVLVTAH 151 (960)
T ss_pred cccchhHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhc---cccch--hhHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 12133445566666666655 345666666666655332 22322 12347777777777777777777777777
Q ss_pred HHHHhhhhhh---------HHhHH-------HHHHHHHHHhc--CCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCC
Q 002877 247 SIASTYYEVL---------EPYMQ-------TLFELTSNAVK--GDEEAVALQAVEFWSSICDEEIELQEFENPETGDSD 308 (872)
Q Consensus 247 ~l~~~~~~~~---------~~~l~-------~l~~~~~~~~~--~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 308 (872)
.+.+++...+ +..++ .++..+....+ +.+...-..-++.+.-+++.-....- .
T Consensus 152 siFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~---Q------ 222 (960)
T KOG1992|consen 152 SIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNF---Q------ 222 (960)
T ss_pred HHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhc---c------
Confidence 7776653221 11112 12222222221 12222112223333333433221110 0
Q ss_pred CCchHHHHHhHHhhHHHHHHHHhcccCCc--ccCCC--CcchhhhHHHHHHHHHhhcCCcchhch---HHHHHhhccCCC
Q 002877 309 SPNYHFIEKARSSLVPMLLETLLKQEEDQ--DQDDS--IWNISMAGGTCLGLVARTVGDEVVPLV---MPFVEANIVKSD 381 (872)
Q Consensus 309 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~--~~d~~--~~~~r~~a~~~l~~l~~~~~~~~~~~l---~~~l~~~l~~~~ 381 (872)
--+.|.++.++.-++...+.++.....- |+++. -..+|...++.....+..+.+.+-|.+ +...-..+.+..
T Consensus 223 -DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s 301 (960)
T KOG1992|consen 223 -DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTS 301 (960)
T ss_pred -cchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcC
Confidence 0145788888888898888887543211 11110 113444555555555555554443333 222333333322
Q ss_pred cchHH-----HHHHHHHHhhcCCCcc---chhHhHHh-----------------------HHHHHHHhcCCCcHH-HHHH
Q 002877 382 WRCRE-----AATYAFGSVLEGPTID---KLAPLVHA-----------------------GFDFLLNAMRDENNH-VKDT 429 (872)
Q Consensus 382 ~~~r~-----aal~~l~~i~~~~~~~---~~~~~l~~-----------------------l~~~l~~~l~d~~~~-vr~~ 429 (872)
...|+ .|+..|.+++...... .-...+.+ .+.++-+-+...+.. -|++
T Consensus 302 ~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~ 381 (960)
T KOG1992|consen 302 PDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRA 381 (960)
T ss_pred CCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHH
Confidence 22222 3344555555432100 00011111 222222223222222 3667
Q ss_pred HHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh-c---ChHHHHHHHHHHHHHHHhhc--cCCC-CCCCchh--
Q 002877 430 TAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK-D---APNVAEKVCGAIYYLAQGYE--DAGP-SSSLLSP-- 500 (872)
Q Consensus 430 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d---~~~v~~~a~~al~~l~~~~~--~~~~-~~~~l~~-- 500 (872)
|+..++-+++.+.. .....+...+..++.... + |++-+..+.+.+..++-... ..|. +...+..
T Consensus 382 a~dlvrgL~~~fe~-------~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 382 AIDLVRGLCKNFEG-------QVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred HHHHHHHHHHHhcc-------hhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 88889989888754 333445555555555433 2 67778888888888876532 1111 1222332
Q ss_pred --hHHHHHHHHHHhhccCCC-cchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHH
Q 002877 501 --YLTSIIAELLRAADRTDV-GGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGD 577 (872)
Q Consensus 501 --~~~~il~~l~~~l~~~~~-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 577 (872)
+...|+|.|.. ++. +..-++-.+++-+..+-+..+ .+++-..+|.++..+..- ..-
T Consensus 455 ~Ff~~~ilp~L~s----~~vn~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a~-------------s~v 513 (960)
T KOG1992|consen 455 DFFANQILPDLLS----PNVNEFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEAE-------------SRV 513 (960)
T ss_pred HHHHHHhhHHhcc----CccccccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccCc-------------chH
Confidence 23444444433 221 223334444444333333333 455556666666655531 112
Q ss_pred HHHHHHHHHHHHHHHcCCC---ccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHH
Q 002877 578 LQASLCGVLQVIIQKFSST---DATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQY 654 (872)
Q Consensus 578 ~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~ 654 (872)
+..++..++..+...-+.. ..++..+.||+..++..+...++.+...--+..+.++-++.........|+.+.+++.
T Consensus 514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~ 593 (960)
T KOG1992|consen 514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQ 593 (960)
T ss_pred HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHH
Confidence 3345555655554332221 1233378888899999999888877555556667788888777777777888777776
Q ss_pred HHhhh----cccchHhHHHHHHHHHHHHHHHhcC----CccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc
Q 002877 655 LQMGL----QNSEEYQVCAITVGVVGDVCRALDD----KVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG 726 (872)
Q Consensus 655 l~~~l----~~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 726 (872)
+.+.+ ++..+|..-...++.+|.+.+..+. ....+-..++|.+-.+|+.+ -.+.-..++..++.+....+
T Consensus 594 Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD--I~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 594 LTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED--IQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 65554 3444565666677777777766542 34456677788888888765 45666778888888887765
Q ss_pred cchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhh--hhHHHHHHHHHHHhcC
Q 002877 727 VHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMM--PYAQHLLQFIELIFKD 804 (872)
Q Consensus 727 ~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~il~~l~~~~~~ 804 (872)
....+....++|.+++-- .|+. ...+-++.+++.++-...+..+. ..++.|+..+.+.+..
T Consensus 672 ~~ip~~~~~l~~~lLsp~----------------lW~r-~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaS 734 (960)
T KOG1992|consen 672 GTIPDSYSPLFPPLLSPN----------------LWKR-SGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIAS 734 (960)
T ss_pred CCCchhHHHHHHHhcCHH----------------HHhh-cCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcC
Confidence 544444444455555421 1222 22233444555544332111122 4456677777776654
Q ss_pred CCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHH
Q 002877 805 NHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQL 855 (872)
Q Consensus 805 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~ 855 (872)
+..+. -++.++..+...++...+. ++...+...+++....+.+++.
T Consensus 735 ka~Dh----~GF~LLn~i~~~~~~~~~~-py~k~i~~llf~RlqnskT~kf 780 (960)
T KOG1992|consen 735 KANDH----HGFYLLNTIIESIPPNELA-PYMKQIFGLLFQRLQNSKTEKF 780 (960)
T ss_pred cccch----hHHHHHHHHHhcCCHhhhh-HHHHHHHHHHHHHHhccCcHHH
Confidence 43333 3788888888888876442 2334455555555555667763
No 49
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.32 E-value=4e-11 Score=113.10 Aligned_cols=399 Identities=12% Similarity=0.159 Sum_probs=238.9
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhccCCCCCc
Q 002877 371 PFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAM-RDENNHVKDTTAWTLSRIFELLHCPATGF 448 (872)
Q Consensus 371 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
|.+.+.+.+.+-.....|..-+..+.+.-....+.+.+. .++|.+++.| ..++...+..|+|+|.+++.-...
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~----- 148 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ----- 148 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc-----
Confidence 556666666666666666666666554322234555666 7889999999 566677888999999999876554
Q ss_pred cccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH--HHHHHHHHHhhccCCCcchhHH
Q 002877 449 SVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL--TSIIAELLRAADRTDVGGSKLR 524 (872)
Q Consensus 449 ~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr 524 (872)
...-.+ ...+|.+++.|.+ +..|++.++|+|++++-.. .....|+ ...+..++..+.+.. ....+.
T Consensus 149 --QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS-------~~~RD~vL~~galeplL~ll~ss~-~~isml 218 (526)
T COG5064 149 --QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS-------EGCRDYVLQCGALEPLLGLLLSSA-IHISML 218 (526)
T ss_pred --ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc-------hhHHHHHHhcCchHHHHHHHHhcc-chHHHH
Confidence 111111 2457778888888 8999999999999998542 1112221 133444445444211 223456
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhch
Q 002877 525 SAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFIL 604 (872)
Q Consensus 525 ~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 604 (872)
+.+.+.|+.+.+.-....--..+.+.+|.+...+.. ...++...+|++++++..+-.+ .+.
T Consensus 219 Rn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys-------------~D~evlvDA~WAiSYlsDg~~E------~i~ 279 (526)
T COG5064 219 RNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS-------------RDPEVLVDACWAISYLSDGPNE------KIQ 279 (526)
T ss_pred HHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh-------------cCHHHHHHHHHHHHHhccCcHH------HHH
Confidence 788899999987543111123444555555554442 2245667889999988543322 333
Q ss_pred hhHH-HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhH-HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHh
Q 002877 605 QTAD-QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMP-EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 605 ~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 682 (872)
..++ .+...|+++|.+++..+...++..+|+++.....+-.-.+. ..++.+...|.+..+ .+|..|||.++.|....
T Consensus 280 avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEaCWTiSNITAGn 358 (526)
T COG5064 280 AVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEACWTISNITAGN 358 (526)
T ss_pred HHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh-hhhhhhheeecccccCC
Confidence 3333 46678999999999999999999999887644322211111 344444444665544 59999999999986443
Q ss_pred cCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc--cchhhhH--HHHHHHHHHHHHhccccCCCchHH
Q 002877 683 DDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG--VHFEKYV--PHALQMMQEAAKACAQLDMEDEEL 757 (872)
Q Consensus 683 ~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l--~~i~~~l~~~~~~~~~~~~~d~~~ 757 (872)
.+++...+ .+++|.|+..|... +..+|+.+++++.+.....- ++...|+ ..++..|+..+.-..
T Consensus 359 teqiqavid~nliPpLi~lls~a--e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d--------- 427 (526)
T COG5064 359 TEQIQAVIDANLIPPLIHLLSSA--EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD--------- 427 (526)
T ss_pred HHHHHHHHhcccchHHHHHHHHH--HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC---------
Confidence 33333333 36788899988877 78889999999998765431 2233333 134444444433211
Q ss_pred HHHHHHHHHHHHHHHHhHhhccchh---hh---hhhhhhHH--HHHHHHHHHhcCCCCCHhHHHHHHHHHHH
Q 002877 758 IDYGNQLRSSIFEAYSGILQGFKSA---RA---EVMMPYAQ--HLLQFIELIFKDNHRDENVTKAAVAVMGD 821 (872)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~l~~~---~~---~~~~~~~~--~il~~l~~~~~~~~~~~~~~~~a~~~l~~ 821 (872)
+.+.+..++++-.++..=... -+ .....|++ ..++.+..+... .+..+-.-|..+|.+
T Consensus 428 ----Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s--~n~~iy~KAYsIIe~ 493 (526)
T COG5064 428 ----NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDS--VNRTIYDKAYSIIEK 493 (526)
T ss_pred ----ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhc--cccHHHHHHHHHHHH
Confidence 123445577777776642211 12 22334443 355666655322 456665555555554
No 50
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.7e-08 Score=104.97 Aligned_cols=444 Identities=16% Similarity=0.175 Sum_probs=290.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 002877 191 SAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNA 270 (872)
Q Consensus 191 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 270 (872)
....+..|+|-+..++. ...+ ...+++.+.+...+++.++++-+.--|...++..++.-.- =+..+...
T Consensus 48 kd~~KleAmKRIia~iA---~G~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL----SIntfQk~ 116 (968)
T KOG1060|consen 48 KDSLKLEAMKRIIALIA---KGKD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL----SINTFQKA 116 (968)
T ss_pred ccHHHHHHHHHHHHHHh---cCCc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----eHHHHHhh
Confidence 44566667776666543 2222 2336677777777789999999998888888876654211 13445577
Q ss_pred hcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhH
Q 002877 271 VKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAG 350 (872)
Q Consensus 271 ~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a 350 (872)
++|+++.+|..|+..++.+-- +.|.|+.+-.+.+.-.| -+..||+.|
T Consensus 117 L~DpN~LiRasALRvlSsIRv----------------------------p~IaPI~llAIk~~~~D-----~s~yVRk~A 163 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRV----------------------------PMIAPIMLLAIKKAVTD-----PSPYVRKTA 163 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcch----------------------------hhHHHHHHHHHHHHhcC-----CcHHHHHHH
Confidence 899999999999976655421 23445544444332222 225799999
Q ss_pred HHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHH
Q 002877 351 GTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTT 430 (872)
Q Consensus 351 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a 430 (872)
+.++-.+-..-+++ -+.+...+...+.|..+.+--+|++++..++-. .+. .+..-+..+.+.+.|-+.+=+-..
T Consensus 164 A~AIpKLYsLd~e~-k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe----rld-LIHknyrklC~ll~dvdeWgQvvl 237 (968)
T KOG1060|consen 164 AHAIPKLYSLDPEQ-KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE----RLD-LIHKNYRKLCRLLPDVDEWGQVVL 237 (968)
T ss_pred HHhhHHHhcCChhh-HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh----HHH-HhhHHHHHHHhhccchhhhhHHHH
Confidence 99999887655544 348889999999999999999999999888743 222 344556677778888888888888
Q ss_pred HHHHHHHHhhc-cCCCC--------C-------------ccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 431 AWTLSRIFELL-HCPAT--------G-------------FSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 431 ~~~l~~l~~~~-~~~~~--------~-------------~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
..+|.++++.. +++.. + .+....+-+.-++...-.++.+ ++.|..+++.++..++-.
T Consensus 238 I~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~ 317 (968)
T KOG1060|consen 238 INMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK 317 (968)
T ss_pred HHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH
Confidence 88999998743 32200 0 0111123344555555566777 999999999999888732
Q ss_pred hccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhc
Q 002877 488 YEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIV 567 (872)
Q Consensus 488 ~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 567 (872)
. ....|...|+..+.. +..++...+.+|..+....+ .-|.||++.++ +
T Consensus 318 ~------------~~~~i~kaLvrLLrs----~~~vqyvvL~nIa~~s~~~~-~lF~P~lKsFf---------------v 365 (968)
T KOG1060|consen 318 N------------QVTKIAKALVRLLRS----NREVQYVVLQNIATISIKRP-TLFEPHLKSFF---------------V 365 (968)
T ss_pred H------------HHHHHHHHHHHHHhc----CCcchhhhHHHHHHHHhcch-hhhhhhhhceE---------------e
Confidence 1 345677778887762 34458888999999998888 77777777654 1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhh
Q 002877 568 SSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKY 647 (872)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 647 (872)
...|+.....++ +..|+.++..- -...++.-+..-+.+.+..+...++.++|+++...+. .
T Consensus 366 ~ssDp~~vk~lK---leiLs~La~es------------ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v 426 (968)
T KOG1060|consen 366 RSSDPTQVKILK---LEILSNLANES------------NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----V 426 (968)
T ss_pred ecCCHHHHHHHH---HHHHHHHhhhc------------cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----h
Confidence 122222211122 45555554322 2356777777778777767888888999998876654 3
Q ss_pred hHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhcc
Q 002877 648 MPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGV 727 (872)
Q Consensus 648 l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~ 727 (872)
-+.++..|...+.+++. .|...++..+..+.+.-+.. -..++..|.+.+++-. -+..|..+++.+|..|...+
T Consensus 427 ~~tCL~gLv~Llsshde-~Vv~eaV~vIk~Llq~~p~~----h~~ii~~La~lldti~-vp~ARA~IiWLige~~e~vp- 499 (968)
T KOG1060|consen 427 TDTCLNGLVQLLSSHDE-LVVAEAVVVIKRLLQKDPAE----HLEILFQLARLLDTIL-VPAARAGIIWLIGEYCEIVP- 499 (968)
T ss_pred hhHHHHHHHHHHhcccc-hhHHHHHHHHHHHHhhChHH----HHHHHHHHHHHhhhhh-hhhhhceeeeeehhhhhhcc-
Confidence 45677777777777654 48888888888887765422 1246666667665432 46677888889998877533
Q ss_pred chhhhHHHHHHHHHHHHH
Q 002877 728 HFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 728 ~~~~~l~~i~~~l~~~~~ 745 (872)
...|.++..+.+...
T Consensus 500 ---ri~PDVLR~laksFs 514 (968)
T KOG1060|consen 500 ---RIAPDVLRKLAKSFS 514 (968)
T ss_pred ---hhchHHHHHHHHhhc
Confidence 234555555555433
No 51
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.27 E-value=5.2e-06 Score=89.85 Aligned_cols=675 Identities=11% Similarity=0.090 Sum_probs=338.1
Q ss_pred HHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhc-cCc--ccc-----
Q 002877 98 LRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEE-ISH--QDL----- 169 (872)
Q Consensus 98 l~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~-~~~--~~l----- 169 (872)
+....++++.+|.++..-+..+- ..+++...|.+...+..++-..|..|+..|.++++. +.+ +.+
T Consensus 10 L~~~ls~d~~vr~~AE~~l~qle-------~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 10 LSGSLSADQNVRSQAETQLKQLE-------LTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHhhcCCChhHHHHHHHHHhccc-------cchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 34445688999998887775543 334577777777776644567899999888887776 321 111
Q ss_pred -chhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 002877 170 -VQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSI 248 (872)
Q Consensus 170 -~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l 248 (872)
..+.-..+...+.+.+-+ ++..+|.++..+...+..+ ++. ...+.+++.+..++.+.+..-...++++|..+
T Consensus 83 ~~e~~K~~IRe~Ll~~l~~--sn~ki~~~vay~is~Ia~~---D~P--d~WpElv~~i~~~l~~~n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLDD--SNSKIRSAVAYAISSIAAV---DYP--DEWPELVPFILKLLSSGNENSIHGAMRVLAEL 155 (1005)
T ss_pred ccHHHHHHHHHHHHhhhhc--cccccchHHHHHHHHHHhc---cCc--hhhHHHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 022223344455555555 5678888888888876543 111 12345888889998888888889999999888
Q ss_pred HHhhhhhhHHhHH-HHHHHHHHH---hcCCChHHHHHHH--HhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhh
Q 002877 249 ASTYYEVLEPYMQ-TLFELTSNA---VKGDEEAVALQAV--EFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSL 322 (872)
Q Consensus 249 ~~~~~~~~~~~l~-~l~~~~~~~---~~~~~~~~~~~al--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 322 (872)
....-..--.... ...+-+... ........+..+. .....+...-... .+ ....-.+.++.++
T Consensus 156 ~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~-----~e------~~~~~~~~~~s~~ 224 (1005)
T KOG2274|consen 156 SDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNV-----EE------VWAEHVKVFLSQI 224 (1005)
T ss_pred HHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHH-----HH------HHHHHHHHHHHHH
Confidence 6543110000000 011111111 1112222222222 2222221110000 00 0001123444555
Q ss_pred HHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhch-------HHHHHhhc--------cCC--Ccc--
Q 002877 323 VPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLV-------MPFVEANI--------VKS--DWR-- 383 (872)
Q Consensus 323 ~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-------~~~l~~~l--------~~~--~~~-- 383 (872)
++..+..+...-.-.+. +.|..|..-..++..+.+.+|....+.+ +..+.+.+ ... +..
T Consensus 225 l~~~~~~l~h~l~~~~g--~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~ 302 (1005)
T KOG2274|consen 225 LNQFMDILEHPLQRNDG--SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDAR 302 (1005)
T ss_pred HHHHHHHHhhhhccccc--chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccc
Confidence 55555444332111111 2388888888899988888875544432 22222211 100 000
Q ss_pred -----hHHHHHH-------HHHHhhcCCC-ccchhHhHHhHHHHHHHhc------------------CCCc--HHHHHHH
Q 002877 384 -----CREAATY-------AFGSVLEGPT-IDKLAPLVHAGFDFLLNAM------------------RDEN--NHVKDTT 430 (872)
Q Consensus 384 -----~r~aal~-------~l~~i~~~~~-~~~~~~~l~~l~~~l~~~l------------------~d~~--~~vr~~a 430 (872)
.++.--. .++.+..... .+.+...+++++..+...+ .|++ ..+|..+
T Consensus 303 ~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~ 382 (1005)
T KOG2274|consen 303 YDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISV 382 (1005)
T ss_pred cCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhH
Confidence 1111111 1111111100 0111111222222222221 1121 2344444
Q ss_pred HHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-----------ChHHHHHHHHHHHHHHHhhccCCCCCCCch
Q 002877 431 AWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-----------APNVAEKVCGAIYYLAQGYEDAGPSSSLLS 499 (872)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-----------~~~v~~~a~~al~~l~~~~~~~~~~~~~l~ 499 (872)
...+.++...++. +.+..+..+....+.. .+..+++..++....-. ++...
T Consensus 383 rd~~~~v~~~f~~----------~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~--------~~~~d 444 (1005)
T KOG2274|consen 383 RDLLLEVITTFGN----------EGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRI--------DDAND 444 (1005)
T ss_pred HHHHHHHHHhccc----------hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhccc--------CcchH
Confidence 4444444444433 2333344443332221 23344444333322210 33334
Q ss_pred hhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHH
Q 002877 500 PYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQ 579 (872)
Q Consensus 500 ~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 579 (872)
.++..++..+...+... +...+...++.++..+.++.. ...+.+..++...+..+.. +....++
T Consensus 445 d~l~~l~~~~~~~l~~~--e~P~Ll~Ra~~~i~~fs~~~~--~~~~~~~~fl~~~v~~l~~------------~~~~~~k 508 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQ--ESPFLLLRAFLTISKFSSSTV--INPQLLQHFLNATVNALTM------------DVPPPVK 508 (1005)
T ss_pred HHHHHHHHHHHhhcccc--cCHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhhcc------------CCCCchh
Confidence 45555555555555422 233344478888887776643 1122333333333222221 1112244
Q ss_pred HHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhh
Q 002877 580 ASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMG 658 (872)
Q Consensus 580 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~ 658 (872)
..++.++.+.+ +.. .+.++.|.++..+.+.....+.++-...+.+++.+++.-++ |..-+ ..+.|.....
T Consensus 509 i~a~~~~~~~~---~~~-----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 509 ISAVRAFCGYC---KVK-----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINL 579 (1005)
T ss_pred HHHHHHHHhcc---Cce-----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHH
Confidence 45555555544 332 67788899999999999888888877777777777654332 22222 2444544332
Q ss_pred -hcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCC--CCCCCchhHHHHHHHHHHhhccchh-hhHH
Q 002877 659 -LQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQ--LNRSVKPPILSCFGDIALAIGVHFE-KYVP 734 (872)
Q Consensus 659 -l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~ 734 (872)
++.+++|.+...+-.++..+.+. .....|+-...+|.++..++.+. .+...-..++..+..+....+..+. .++.
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 34456788888888888888773 34467888899999999998762 1233344566677766666665554 3566
Q ss_pred HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhc----cchhhhhhhhhhHHHHHHHHHHHhcCCCCCHh
Q 002877 735 HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQG----FKSARAEVMMPYAQHLLQFIELIFKDNHRDEN 810 (872)
Q Consensus 735 ~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 810 (872)
..+|.+.++.-+. +|. +.-...-+|+.+++.. +.....+.-.. +..||+.+.+++. +..++.
T Consensus 659 ~~FpaVak~tlHs-----dD~-------~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~-~~yImqV~sqLLd-p~~sds 724 (1005)
T KOG2274|consen 659 YAFPAVAKITLHS-----DDH-------ETLQNATECLRALISVTLEQLLTWHDEPGHN-LWYIMQVLSQLLD-PETSDS 724 (1005)
T ss_pred HHhHHhHhheeec-----CCh-------HHHHhHHHHHHHHHhcCHHHHHhhccCCCcc-HHHHHHHHHHHcC-Cccchh
Confidence 7788887764331 121 2234445667666665 22222222222 5578888877753 322332
Q ss_pred HH----HHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 002877 811 VT----KAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQ 863 (872)
Q Consensus 811 ~~----~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~ 863 (872)
.. ...+.+|....+.+|++ . ..++...+.++-.-.+.++.++-.++.
T Consensus 725 ~a~~VG~lV~tLit~a~~el~~n-----~-d~IL~Avisrmq~ae~lsviQsLi~Vf 775 (1005)
T KOG2274|consen 725 AAAFVGPLVLTLITHASSELGPN-----L-DQILRAVISRLQQAETLSVIQSLIMVF 775 (1005)
T ss_pred HHHHHhHHHHHHHHHHHHHhchh-----H-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11 12233333333444442 1 235566666644456666666665543
No 52
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.7e-05 Score=88.91 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHH
Q 002877 576 GDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYL 655 (872)
Q Consensus 576 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l 655 (872)
..+|......|..+...-..+ .....++..+++.+...+++.....+...+.++..+.+..+..+..+++..+|-+
T Consensus 668 ~~vQkK~yrlL~~l~~~~s~~----~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSPSGE----GLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCchh----hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456677777787776651110 0334456788888888888888999999999999999988877777778777776
Q ss_pred HhhhcccchHhHHHHHHHHHHHHH--HHhc-CCccc---cHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccch
Q 002877 656 QMGLQNSEEYQVCAITVGVVGDVC--RALD-DKVLP---FCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHF 729 (872)
Q Consensus 656 ~~~l~~~~~~~v~~~a~~~l~~l~--~~~~-~~~~~---~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 729 (872)
.-.++. .+...|..|..+|..|+ ...- +.-.| .++.+++.+...+... ...++..-+.+++.+....+...
T Consensus 744 IL~~Ke-~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 744 ILSLKE-VNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHhccc-ccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccc
Confidence 655543 34457888888888887 3332 22223 3445555555544333 22222232667777766555443
Q ss_pred h-hhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCC
Q 002877 730 E-KYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRD 808 (872)
Q Consensus 730 ~-~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 808 (872)
. .+++.++..+.-.+... ..+++..++..+..++..+.. ..+.+|.+.+++.+.....+ ..
T Consensus 821 d~~~l~~li~~V~~~L~s~-------------sreI~kaAI~fikvlv~~~pe---~~l~~~~~~LL~sll~ls~d--~k 882 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASN-------------SREIAKAAIGFIKVLVYKFPE---ECLSPHLEELLPSLLALSHD--HK 882 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHHHHcCCH---HHHhhhHHHHHHHHHHHHHh--hh
Confidence 3 46677777666665431 135666666666666666543 45789999999998886554 57
Q ss_pred HhHHHHHHHHHHHHHhhhCcchhhhccC
Q 002877 809 ENVTKAAVAVMGDLADALGPNTKLLFKD 836 (872)
Q Consensus 809 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 836 (872)
..+|..+-.++..++..+|...+..++.
T Consensus 883 ~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 883 IKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 8999999999999999999987765553
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.21 E-value=2.5e-09 Score=125.33 Aligned_cols=271 Identities=18% Similarity=0.187 Sum_probs=191.7
Q ss_pred HHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhH
Q 002877 95 DLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEV 174 (872)
Q Consensus 95 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~ 174 (872)
+.|++.|.++++.||..++..|+.+. -+..++.|.+.+.++ ++.+|..++..|..+.+....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~~-------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLPP-------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCc--------
Confidence 46777888999999999999998763 135678888989888 889999999999887654311
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYE 254 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 254 (872)
.+.+...+.+ +++.||..++.+|..+- . .. ...+...+.++++.+|..++..|..+-. .
T Consensus 686 ---~~~L~~~L~~--~d~~VR~~A~~aL~~~~----~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--~- 744 (897)
T PRK13800 686 ---APALRDHLGS--PDPVVRAAALDVLRALR----A--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD--V- 744 (897)
T ss_pred ---hHHHHHHhcC--CCHHHHHHHHHHHHhhc----c--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC--c-
Confidence 1234455666 67899999999888641 1 00 1234557788999999999999887521 0
Q ss_pred hhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhccc
Q 002877 255 VLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQE 334 (872)
Q Consensus 255 ~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 334 (872)
+.+.....|+++++|..+...+..+..... ..++.+...+.+
T Consensus 745 ----------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------------------------~~~~~L~~ll~D-- 786 (897)
T PRK13800 745 ----------ESVAGAATDENREVRIAVAKGLATLGAGGA--------------------------PAGDAVRALTGD-- 786 (897)
T ss_pred ----------HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------------------------hhHHHHHHHhcC--
Confidence 123455788999999999887766654211 012333333321
Q ss_pred CCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHH
Q 002877 335 EDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDF 414 (872)
Q Consensus 335 ~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~ 414 (872)
+ + +.+|.+|..+|..+.. . +.+.+.+...+.+++|.+|.+|+.+|+.+.. +..++.
T Consensus 787 ~-----d--~~VR~aA~~aLg~~g~---~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~ 842 (897)
T PRK13800 787 P-----D--PLVRAAALAALAELGC---P---PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPA 842 (897)
T ss_pred C-----C--HHHHHHHHHHHHhcCC---c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHH
Confidence 1 1 7799888888775532 1 2233456677788999999999999987642 134578
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHH
Q 002877 415 LLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIY 482 (872)
Q Consensus 415 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~ 482 (872)
|...|+|+++.||..|.++|+++. . -+...+.|...+.| ++.||..|..+|.
T Consensus 843 L~~~L~D~~~~VR~~A~~aL~~~~---~-------------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 843 LVEALTDPHLDVRKAAVLALTRWP---G-------------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccC---C-------------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 888999999999999999999851 1 12456667778888 9999999999885
No 54
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=4.9e-10 Score=106.98 Aligned_cols=428 Identities=14% Similarity=0.110 Sum_probs=247.0
Q ss_pred CCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHH
Q 002877 379 KSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQR 458 (872)
Q Consensus 379 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (872)
+.+......+..+++.+.+ +.+...-.+....++..++++++.++.++..++|+++-..... ..-..+..
T Consensus 58 SDnlnlqrsaalafAeite----k~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk------~liv~l~G 127 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITE----KGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENK------GLIVSLLG 127 (550)
T ss_pred ccccccchHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCc------eEEEeccC
Confidence 3333333345556666654 3344445577788888899999999999999999998766541 11111122
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcC
Q 002877 459 ILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCS 538 (872)
Q Consensus 459 ~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~ 538 (872)
+=+.+.+.+.|+..||..++.++.+++.-- .....---..-+..+.+.-+. ++..++..+..++..+...-
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~d------~nk~kiA~sGaL~pltrLaks---kdirvqrnatgaLlnmThs~ 198 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATFD------SNKVKIARSGALEPLTRLAKS---KDIRVQRNATGALLNMTHSR 198 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhccc------cchhhhhhccchhhhHhhccc---chhhHHHHHHHHHHHhhhhh
Confidence 223445566667778888888888877542 111111111223334443332 33566889999998887654
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHH
Q 002877 539 NITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF 618 (872)
Q Consensus 539 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 618 (872)
. ..-.-....-+|.+.+.+.. ...++|.+++.+++.+.-.-.. .+.+...-|.+++.++.++
T Consensus 199 E-nRr~LV~aG~lpvLVsll~s-------------~d~dvqyycttaisnIaVd~~~----Rk~Laqaep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 199 E-NRRVLVHAGGLPVLVSLLKS-------------GDLDVQYYCTTAISNIAVDRRA----RKILAQAEPKLVPALVDLM 260 (550)
T ss_pred h-hhhhhhccCCchhhhhhhcc-------------CChhHHHHHHHHhhhhhhhHHH----HHHHHhcccchHHHHHHHH
Confidence 3 11111222345666665553 2345778888888887532111 1133334467999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 002877 619 ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLL 698 (872)
Q Consensus 619 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~ 698 (872)
++.++.++..|-.+++.++.-......-.-..-+|.+.+.+++...+ .....+.|+..++.+.+....-.=..++..|+
T Consensus 261 d~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnisihplNe~lI~dagfl~pLV 339 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNISIHPLNEVLIADAGFLRPLV 339 (550)
T ss_pred hCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcccccCcccceecccchhHHH
Confidence 99999999999999999876433222111124577888888765544 55666778877776655332211134677788
Q ss_pred HHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHH-HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhh
Q 002877 699 NALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVP-HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQ 777 (872)
Q Consensus 699 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 777 (872)
++|...+ +.+++-.+...+.+++.........+.+ ..+|.+...+..- + .++++.+-.|+.-+.
T Consensus 340 rlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~--p-----------vsvqseisac~a~La- 404 (550)
T KOG4224|consen 340 RLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG--P-----------VSVQSEISACIAQLA- 404 (550)
T ss_pred HHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC--C-----------hhHHHHHHHHHHHHH-
Confidence 8888774 5568889999999998765443332222 2233333322110 0 133333333332222
Q ss_pred ccchhhhhhhhhhH--HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcch-----hhhccCchHHHHHHHHHhcC
Q 002877 778 GFKSARAEVMMPYA--QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNT-----KLLFKDSSFCNDFMSECLRS 850 (872)
Q Consensus 778 ~l~~~~~~~~~~~~--~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-----~~~~~~~~~v~~ll~~~~~~ 850 (872)
+... ++.++ ..+++.+....-+ .++++|..+..++..++.....-. +..+. ++ +...+...+.+
T Consensus 405 -l~d~----~k~~lld~gi~~iLIp~t~s--~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~-~g-i~g~L~Rfl~S 475 (550)
T KOG4224|consen 405 -LNDN----DKEALLDSGIIPILIPWTGS--ESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV-QG-IQGRLARFLAS 475 (550)
T ss_pred -hccc----cHHHHhhcCCcceeecccCc--cchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc-hh-HHHHHHHHHhh
Confidence 2211 22222 2244445443322 679999999988888765433210 00011 22 34444445888
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 002877 851 DDEQLKETAGWTQGMINR 868 (872)
Q Consensus 851 ~~~~~~~~a~~~~~~~~~ 868 (872)
.+..+++.|.|+...+.+
T Consensus 476 ~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 476 HELTFRHIARWTIQQLLE 493 (550)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999987764
No 55
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.20 E-value=3.4e-08 Score=107.58 Aligned_cols=397 Identities=17% Similarity=0.189 Sum_probs=258.8
Q ss_pred HHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHH
Q 002877 97 LLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNA 176 (872)
Q Consensus 97 Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~ 176 (872)
++..|.+.+...-..++.+|..+.....|....+++.+.+...+.++ ++.+|..++..++.+..... .....-.-+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~-~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSE-GAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCH-HHHHHhcCcc
Confidence 77778877666667888999999887666545788899999999999 99999999999998887642 1110112356
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhh
Q 002877 177 VLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVL 256 (872)
Q Consensus 177 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (872)
+++.+..++.+ ++..|...|+++|..+...-. .+.. .....+...+.+.+...++.+|..+++++..++...++.+
T Consensus 120 l~~~i~~~L~~--~d~~Va~~A~~~L~~l~~~~~-~~~~-l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 120 LLPLIIQCLRD--PDLSVAKAAIKALKKLASHPE-GLEQ-LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred HHHHHHHHHcC--CcHHHHHHHHHHHHHHhCCch-hHHH-HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 88999999998 789999999999999764211 1110 0011135566666666688899999999999988777766
Q ss_pred HHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccC
Q 002877 257 EPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEE 335 (872)
Q Consensus 257 ~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 335 (872)
..... .+++.++..+.++|.-++..+++.+..++..... ..|+.. ..+++.+...+...++
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g----------------~~yL~~--~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG----------------LQYLEQ--QGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH----------------HHHHHh--CCHHHHHHHHHhcccc
Confidence 54433 5888899989988888899999999999885321 123322 2577888887766554
Q ss_pred CcccCCCCcchh-hhHHHHHHHHHhhcCCc---chhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCcc-ch----hH
Q 002877 336 DQDQDDSIWNIS-MAGGTCLGLVARTVGDE---VVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTID-KL----AP 406 (872)
Q Consensus 336 d~~~d~~~~~~r-~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~-~~----~~ 406 (872)
|+. ...+. .....+.+.++...+.. ..|.++..+.+.+.+.+...+.+|+-++|.++.....+ .+ .+
T Consensus 258 dp~----~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~ 333 (503)
T PF10508_consen 258 DPR----LSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP 333 (503)
T ss_pred CCc----ccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 431 11222 22235566666543333 34667777778888889999999999999998654211 11 23
Q ss_pred hHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHH-------------HHHHhhc-ChH
Q 002877 407 LVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTV-------------LLESIKD-APN 472 (872)
Q Consensus 407 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------------l~~~l~d-~~~ 472 (872)
.++.++..+..........+|.+++.+++.+...... ...+.+..+... ++..++. -|.
T Consensus 334 ~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~-------~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~e 406 (503)
T PF10508_consen 334 AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD-------RQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPE 406 (503)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC-------CchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchH
Confidence 4556777777777888888999999999999754432 111222222222 2333333 478
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhc
Q 002877 473 VAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRC 537 (872)
Q Consensus 473 v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~ 537 (872)
+|.++...+..++..-- +-...-..+.++..++..-. ..+...+..=++++..+++.
T Consensus 407 lr~a~~~~l~~l~~~~W-----g~~~i~~~~gfie~lldr~~---E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 407 LRCAAYRLLQALAAQPW-----GQREICSSPGFIEYLLDRST---ETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHHHHHHHHhcCHH-----HHHHHHhCccHHhhhcCCCC---CCCHHHHHHHHHHHHHHHhc
Confidence 99999988888885410 00000112334444443332 12334455556666666644
No 56
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.17 E-value=3.3e-08 Score=107.67 Aligned_cols=335 Identities=13% Similarity=0.162 Sum_probs=224.9
Q ss_pred hhHHHHHHHHHhhc-CCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhH-HhHHHHHHHhcCCCcHH
Q 002877 348 MAGGTCLGLVARTV-GDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLV-HAGFDFLLNAMRDENNH 425 (872)
Q Consensus 348 ~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~ 425 (872)
..+.++|+.+.... +....+.+.+++...+.+++..+|..++..++.++.... ....... ..+++.++.++.|++..
T Consensus 56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~-~~~~~~~~~~l~~~i~~~L~~~d~~ 134 (503)
T PF10508_consen 56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE-GAAQLLVDNELLPLIIQCLRDPDLS 134 (503)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH-HHHHHhcCccHHHHHHHHHcCCcHH
Confidence 34456777777665 466688899999999999999999999999999886542 2222122 38899999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCccccCcccHHHH-----HHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCch
Q 002877 426 VKDTTAWTLSRIFELLHCPATGFSVISPENLQRI-----LTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLS 499 (872)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~ 499 (872)
|...|..+|..++..-.. +..+ +..|...+.. +..+|.+...++..++.. .....
T Consensus 135 Va~~A~~~L~~l~~~~~~------------~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-------S~~~~ 195 (503)
T PF10508_consen 135 VAKAAIKALKKLASHPEG------------LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-------SPEAA 195 (503)
T ss_pred HHHHHHHHHHHHhCCchh------------HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-------CHHHH
Confidence 999999999999864332 2333 5666666666 788999999988888765 33334
Q ss_pred hhHH--HHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH--HHHHHHHHHHHHHHhhhhcCcchhhhH
Q 002877 500 PYLT--SIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA--ELLPAIMGRLGQTLELQIVSSDDREKQ 575 (872)
Q Consensus 500 ~~~~--~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~ 575 (872)
.+.. ++++.++..+.+ ++.-++..+++.+..++.. .....|+. .+++.+.+.+...- +|+...
T Consensus 196 ~~~~~sgll~~ll~eL~~---dDiLvqlnalell~~La~~---~~g~~yL~~~gi~~~L~~~l~~~~-------~dp~~~ 262 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDS---DDILVQLNALELLSELAET---PHGLQYLEQQGIFDKLSNLLQDSE-------EDPRLS 262 (503)
T ss_pred HHHHhccHHHHHHHHhcC---ccHHHHHHHHHHHHHHHcC---hhHHHHHHhCCHHHHHHHHHhccc-------cCCccc
Confidence 4444 388888888874 3467799999999999983 33455555 36666666665432 121000
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh-hHH-----HhhhH
Q 002877 576 GDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG-PEF-----AKYMP 649 (872)
Q Consensus 576 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~-----~~~l~ 649 (872)
.-+.-..+...++++..-+. .+....+.++..+..++.+.+...+..|+.++|.++.... ..+ .+-+.
T Consensus 263 ~~~l~g~~~f~g~la~~~~~------~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~ 336 (503)
T PF10508_consen 263 SLLLPGRMKFFGNLARVSPQ------EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMK 336 (503)
T ss_pred chhhhhHHHHHHHHHhcChH------HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHH
Confidence 11122333555555544222 4555567888888889999999999999999999986542 121 23344
Q ss_pred HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHH-------------HHHHHhcCCCCCCCCchhHHH
Q 002877 650 EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMS-------------LLLNALSNSQLNRSVKPPILS 716 (872)
Q Consensus 650 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~-------------~l~~~l~~~~~~~~~~~~~~~ 716 (872)
.++..+.....+. ..+++..++.+++.+.....+.-..-+..+.. .+...++.| -+++|.+++.
T Consensus 337 ~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP--F~elr~a~~~ 413 (503)
T PF10508_consen 337 HVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP--FPELRCAAYR 413 (503)
T ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chHHHHHHHH
Confidence 5666666555543 34689999999999865443211111112222 444555554 5788888888
Q ss_pred HHHHHHHh
Q 002877 717 CFGDIALA 724 (872)
Q Consensus 717 ~l~~l~~~ 724 (872)
.+..++..
T Consensus 414 ~l~~l~~~ 421 (503)
T PF10508_consen 414 LLQALAAQ 421 (503)
T ss_pred HHHHHhcC
Confidence 88888764
No 57
>PRK09687 putative lyase; Provisional
Probab=99.17 E-value=3e-09 Score=105.42 Aligned_cols=253 Identities=13% Similarity=0.125 Sum_probs=175.6
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcc
Q 002877 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFS 449 (872)
Q Consensus 370 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
.+.+...+.+++..+|..++.+|+.+.. +.+++.+...+.|+++.+|..+.++||++...-
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-------- 85 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-------- 85 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--------
Confidence 3445566678899999999999987753 245667777789999999999999999976311
Q ss_pred ccCcccHHHHHHHHHHH-hhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHH
Q 002877 450 VISPENLQRILTVLLES-IKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAA 527 (872)
Q Consensus 450 ~~~~~~~~~~l~~l~~~-l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 527 (872)
......++.|... +.| ++.||..|+.+|+.++... . .+.+..++.+...+. | ++..||..+
T Consensus 86 ----~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~------~----~~~~~a~~~l~~~~~--D-~~~~VR~~a 148 (280)
T PRK09687 86 ----RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN------P----LYSPKIVEQSQITAF--D-KSTNVRFAV 148 (280)
T ss_pred ----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc------c----ccchHHHHHHHHHhh--C-CCHHHHHHH
Confidence 1134667777765 456 8999999999999986432 1 112344555555554 2 356789999
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH
Q 002877 528 YETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA 607 (872)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 607 (872)
..+|+.+-. +..++.++..+.. ...++|..+..+|+.+ .. ..
T Consensus 149 ~~aLg~~~~-----------~~ai~~L~~~L~d-------------~~~~VR~~A~~aLg~~--~~------------~~ 190 (280)
T PRK09687 149 AFALSVIND-----------EAAIPLLINLLKD-------------PNGDVRNWAAFALNSN--KY------------DN 190 (280)
T ss_pred HHHHhccCC-----------HHHHHHHHHHhcC-------------CCHHHHHHHHHHHhcC--CC------------CC
Confidence 988864421 1234455554442 2235888888888765 11 12
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCcc
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVL 687 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 687 (872)
+...+.|...+.+.+..||..|..+|+.+. . +..+|.|.+.+.+.. ++..++.++|.+..
T Consensus 191 ~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~------~~av~~Li~~L~~~~---~~~~a~~ALg~ig~------- 250 (280)
T PRK09687 191 PDIREAFVAMLQDKNEEIRIEAIIGLALRK----D------KRVLSVLIKELKKGT---VGDLIIEAAGELGD------- 250 (280)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHccC----C------hhHHHHHHHHHcCCc---hHHHHHHHHHhcCC-------
Confidence 467888889999999999999999998862 1 367888888887643 67788888888733
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHH
Q 002877 688 PFCDGIMSLLLNALSNSQLNRSVKPPILSCFGD 720 (872)
Q Consensus 688 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~ 720 (872)
+..+|.|.+.+.... +..++..+..++.+
T Consensus 251 ---~~a~p~L~~l~~~~~-d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 ---KTLLPVLDTLLYKFD-DNEIITKAIDKLKR 279 (280)
T ss_pred ---HhHHHHHHHHHhhCC-ChhHHHHHHHHHhc
Confidence 366788888886332 77788877777654
No 58
>PRK09687 putative lyase; Provisional
Probab=99.17 E-value=5.3e-09 Score=103.70 Aligned_cols=252 Identities=15% Similarity=0.196 Sum_probs=171.7
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHh
Q 002877 180 AVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPY 259 (872)
Q Consensus 180 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 259 (872)
.+...+.+ ++..||..++.+|..+- . +.++..+..+++++++.+|..+...|+.+-.....
T Consensus 27 ~L~~~L~d--~d~~vR~~A~~aL~~~~----~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 27 ELFRLLDD--HNSLKRISSIRVLQLRG----G--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHhcC----c--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 34455666 68899999999998631 1 12556667778889999999999999997532110
Q ss_pred HHHHHHHHHHH-hcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcc
Q 002877 260 MQTLFELTSNA-VKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQD 338 (872)
Q Consensus 260 l~~l~~~~~~~-~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 338 (872)
....++.+... .+++++.+|..|+..++.++.... .. .+..++.+...+.+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~------------------~~----~~~a~~~l~~~~~D------ 139 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP------------------LY----SPKIVEQSQITAFD------ 139 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc------------------cc----chHHHHHHHHHhhC------
Confidence 12344444433 577889999999988877754311 01 11222333222221
Q ss_pred cCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh
Q 002877 339 QDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA 418 (872)
Q Consensus 339 ~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~ 418 (872)
..|.+|..+..+|+.+ + -+..++.+...+.+++|.+|..|+.+||.+.... +.+.+.|.+.
T Consensus 140 ---~~~~VR~~a~~aLg~~----~---~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~ 200 (280)
T PRK09687 140 ---KSTNVRFAVAFALSVI----N---DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAM 200 (280)
T ss_pred ---CCHHHHHHHHHHHhcc----C---CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHH
Confidence 1289999988888543 2 2345677777778999999999999999983211 2567888999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 002877 419 MRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLL 498 (872)
Q Consensus 419 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (872)
+.|+++.||..|.++||++.. +..++.|++.+.+ +.++..++.+++.+-.
T Consensus 201 L~D~~~~VR~~A~~aLg~~~~-----------------~~av~~Li~~L~~-~~~~~~a~~ALg~ig~------------ 250 (280)
T PRK09687 201 LQDKNEEIRIEAIIGLALRKD-----------------KRVLSVLIKELKK-GTVGDLIIEAAGELGD------------ 250 (280)
T ss_pred hcCCChHHHHHHHHHHHccCC-----------------hhHHHHHHHHHcC-CchHHHHHHHHHhcCC------------
Confidence 999999999999999998531 3678888888886 2367778888877642
Q ss_pred hhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002877 499 SPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNE 533 (872)
Q Consensus 499 ~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~ 533 (872)
+..+|.|...++..+ +..++..+.+++..
T Consensus 251 ----~~a~p~L~~l~~~~~--d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 ----KTLLPVLDTLLYKFD--DNEIITKAIDKLKR 279 (280)
T ss_pred ----HhHHHHHHHHHhhCC--ChhHHHHHHHHHhc
Confidence 245666767665222 45668888887753
No 59
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.14 E-value=9e-09 Score=105.64 Aligned_cols=222 Identities=17% Similarity=0.239 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC-----CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCC
Q 002877 235 VEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG-----DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDS 309 (872)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 309 (872)
+.++..+|+++...+++|.+.+.++++.++..+.+.+.. ..+.+...++.|+..+++....... ..
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~l---------f~ 180 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNL---------FE 180 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTT---------T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHH---------hC
Confidence 467889999999999999999999988877766555433 2456778899999988765321100 00
Q ss_pred CchHHHHHhHHhhHH-HHHHHHhcccCCcc--------------cCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHH
Q 002877 310 PNYHFIEKARSSLVP-MLLETLLKQEEDQD--------------QDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVE 374 (872)
Q Consensus 310 ~~~~~~~~~l~~l~~-~l~~~l~~~~~d~~--------------~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 374 (872)
.++.++.|+. +++..|.-.++|.+ |..+..+.|.+|.+++..+++.+++.+.+.+..++.
T Consensus 181 -----~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~ 255 (370)
T PF08506_consen 181 -----NKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQ 255 (370)
T ss_dssp -----SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1233333333 23344433332211 112456899999999999999998888888888877
Q ss_pred hhcc------CCCcchHHHHHHHHHHhhcCCCc--c---------chhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002877 375 ANIV------KSDWRCREAATYAFGSVLEGPTI--D---------KLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSR 436 (872)
Q Consensus 375 ~~l~------~~~~~~r~aal~~l~~i~~~~~~--~---------~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~ 436 (872)
..++ +.+|+.+++|+..+++++..... . .+..++. .++|-+. .-.+.+|.+|..|++.+..
T Consensus 256 ~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~ 334 (370)
T PF08506_consen 256 QLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYT 334 (370)
T ss_dssp HHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHH
Confidence 7765 45799999999999999865421 0 1222333 3344444 2236789999999999999
Q ss_pred HHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHH
Q 002877 437 IFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAI 481 (872)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al 481 (872)
+...++. +.+..+++.+...|.+ +..|+.-|+.++
T Consensus 335 Fr~~l~~----------~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 335 FRNQLPK----------EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HGGGS-H----------HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHhhCCH----------HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 9877654 6888999999999998 777777666553
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=6.4e-06 Score=88.09 Aligned_cols=465 Identities=13% Similarity=0.151 Sum_probs=247.2
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 002877 136 LLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQN 215 (872)
Q Consensus 136 l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~ 215 (872)
.+..+.+++ =.+.|-+.+.+. -+..+- ++.+--+...+.+-|++ .+.-|.-.|+-+|+.+.. .
T Consensus 75 clKLias~~-f~dKRiGYLaam-LlLdE~------qdvllLltNslknDL~s--~nq~vVglAL~alg~i~s-------~ 137 (866)
T KOG1062|consen 75 CLKLIASDN-FLDKRIGYLAAM-LLLDER------QDLLLLLTNSLKNDLNS--SNQYVVGLALCALGNICS-------P 137 (866)
T ss_pred HHHHhcCCC-chHHHHHHHHHH-HHhccc------hHHHHHHHHHHHhhccC--CCeeehHHHHHHhhccCC-------H
Confidence 345555551 234455444433 222221 23333455556666666 566788888888887532 2
Q ss_pred hhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhh
Q 002877 216 EMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIE 295 (872)
Q Consensus 216 ~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~ 295 (872)
++. +.+.+-+-++++.+++-+|+.|.-|...++...|+...-++... ...+.+.+..+-..++.++..+|+...+
T Consensus 138 Ema-rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~----~~lL~ek~hGVL~~~l~l~~e~c~~~~~ 212 (866)
T KOG1062|consen 138 EMA-RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAF----RKLLCEKHHGVLIAGLHLITELCKISPD 212 (866)
T ss_pred HHh-HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHH----HHHHhhcCCceeeeHHHHHHHHHhcCHH
Confidence 222 22677788888889999999999999999998887765544433 3344556678888888888888886432
Q ss_pred hhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHh
Q 002877 296 LQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEA 375 (872)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~ 375 (872)
. ..+.++..+.++..+-+.....- ..+ +++.. .++.++..-+-.+..
T Consensus 213 ~---------------l~~fr~l~~~lV~iLk~l~~~~y-spe-----ydv~g------------i~dPFLQi~iLrlLr 259 (866)
T KOG1062|consen 213 A---------------LSYFRDLVPSLVKILKQLTNSGY-SPE-----YDVHG------------ISDPFLQIRILRLLR 259 (866)
T ss_pred H---------------HHHHHHHHHHHHHHHHHHhcCCC-CCc-----cCccC------------CCchHHHHHHHHHHH
Confidence 1 12334445555555444332211 111 11110 011111111111111
Q ss_pred hccCCCcchHHHHHHHHHHhhcCCCccc-h-hHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCc
Q 002877 376 NIVKSDWRCREAATYAFGSVLEGPTIDK-L-APLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISP 453 (872)
Q Consensus 376 ~l~~~~~~~r~aal~~l~~i~~~~~~~~-~-~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
.+...+...-+.-...|+.++..+.... . ...+-+.+..+... ++++..|..|..+||+|...-
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~------------ 325 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNR------------ 325 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCC------------
Confidence 2223334444555556666665442111 1 11222333333332 456678888888888876322
Q ss_pred ccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002877 454 ENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNE 533 (872)
Q Consensus 454 ~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~ 533 (872)
+.++|.-|...|...+..- +.....|-. .++.|++.+| ..+|+.|++....
T Consensus 326 ----------------d~NirYvaLn~L~r~V~~d------~~avqrHr~----tIleCL~DpD---~SIkrralELs~~ 376 (866)
T KOG1062|consen 326 ----------------DNNIRYVALNMLLRVVQQD------PTAVQRHRS----TILECLKDPD---VSIKRRALELSYA 376 (866)
T ss_pred ----------------ccceeeeehhhHHhhhcCC------cHHHHHHHH----HHHHHhcCCc---HHHHHHHHHHHHH
Confidence 2233444444444444321 222333332 3445555333 5568888888888
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHH
Q 002877 534 VVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVL 613 (872)
Q Consensus 534 l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 613 (872)
++.... . ..++..++..+.+. ..+++..+..-+..+++.+.++ - .=.++.
T Consensus 377 lvn~~N---v----~~mv~eLl~fL~~~-------------d~~~k~~~as~I~~laEkfaP~------k----~W~idt 426 (866)
T KOG1062|consen 377 LVNESN---V----RVMVKELLEFLESS-------------DEDFKADIASKIAELAEKFAPD------K----RWHIDT 426 (866)
T ss_pred Hhcccc---H----HHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHhcCCc------c----hhHHHH
Confidence 887644 2 23334444444432 1234444555555555555442 1 113444
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHHHh-hhHHHhhhHHHHHHHHhh-hcccchHhHHHHHHHHHHHHHHHh--c---CC-
Q 002877 614 FLRVFACRSSTVHEEAMLAIGALAYAT-GPEFAKYMPEFYQYLQMG-LQNSEEYQVCAITVGVVGDVCRAL--D---DK- 685 (872)
Q Consensus 614 l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~i~~~l~~~-l~~~~~~~v~~~a~~~l~~l~~~~--~---~~- 685 (872)
++.++...-..|+..+...+-.++... ++.-..-...++..+... +...+.......|.||+|....-. | +.
T Consensus 427 ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p 506 (866)
T KOG1062|consen 427 MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEP 506 (866)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCC
Confidence 555555555667777777766665544 221111122233322221 111122336788999999987443 2 11
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccc
Q 002877 686 VLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVH 728 (872)
Q Consensus 686 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 728 (872)
...--..++..+.+.+.+...+..+|..++.++-.|....+..
T Consensus 507 ~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 507 IKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred CcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc
Confidence 1222357888888888877667778889999999988877654
No 61
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=2.8e-08 Score=109.68 Aligned_cols=286 Identities=17% Similarity=0.135 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHH
Q 002877 147 AALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNF--QNEMERNYIMK 224 (872)
Q Consensus 147 ~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~--~~~~~~~~ll~ 224 (872)
...+..|+..|..+...+.. ...++.++|.++.++.| +...||..|+.+|..++...++-- +...+.+|+++
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMD--SEADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 34567788888888777643 44689999999999999 788999999999999988765431 22234678999
Q ss_pred HHHHhhcC-CcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh-cCCChHHHHHHHHhHhHHhHhhhhhhhhcCC
Q 002877 225 VVCETAKS-KEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAV-KGDEEAVALQAVEFWSSICDEEIELQEFENP 302 (872)
Q Consensus 225 ~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~ 302 (872)
.+..+.++ ....+|..-..++..++...+.++.- -...-...+ .+++.+ ...+...
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~----~q~~~~~g~~n~~nse----------t~~~~~~-------- 568 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL----TQELRQAGMLNDPNSE----------TAPEQNY-------- 568 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH----HHHHHhcccccCcccc----------ccccccc--------
Confidence 99998887 66778888889999998876655421 111111111 122222 0000000
Q ss_pred CCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC-CcchhchHHHHHhhccCCC
Q 002877 303 ETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG-DEVVPLVMPFVEANIVKSD 381 (872)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~ 381 (872)
..........+-......+++.+ ..||++..+.+..++..+| +..-..+++++..++++.+
T Consensus 569 ---------~~~~~~L~~~V~~~v~sLlsd~~---------~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 569 ---------NTELQALHHTVEQMVSSLLSDSP---------PIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD 630 (1431)
T ss_pred ---------chHHHHHHHHHHHHHHHHHcCCc---------hHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc
Confidence 00111111222222233333211 4689999999999999998 5666788999999999999
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILT 461 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 461 (872)
|..|-+-.--+.-++-..+.....+ -++|.+.+.|.|+.+.|...|+.++..+++.-- ....++.+++.
T Consensus 631 w~LR~aFfdsI~gvsi~VG~rs~se---yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l--------l~K~~v~~i~~ 699 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWRSVSE---YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL--------LRKPAVKDILQ 699 (1431)
T ss_pred HHHHHHHHhhccceEEEEeeeeHHH---HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc--------cchHHHHHHHH
Confidence 9999776554444433333222333 467999999999999999999999988876432 23456777888
Q ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHHhhc
Q 002877 462 VLLESIKD-APNVAEKVCGAIYYLAQGYE 489 (872)
Q Consensus 462 ~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (872)
.....+-. |-=||..++..+..+.+.++
T Consensus 700 ~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 700 DVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred hhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 77777775 77799999999998888764
No 62
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.10 E-value=1.7e-08 Score=118.54 Aligned_cols=275 Identities=17% Similarity=0.192 Sum_probs=193.8
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHH
Q 002877 37 GFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVI 116 (872)
Q Consensus 37 ~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l 116 (872)
..+..|...|.+ .++.+|..|+..|...- ++ ...+.|.+.|.++++.||..++..+
T Consensus 621 ~~~~~L~~~L~D--~d~~VR~~Av~~L~~~~------------------~~----~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 621 PSVAELAPYLAD--PDPGVRRTAVAVLTETT------------------PP----GFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred hhHHHHHHHhcC--CCHHHHHHHHHHHhhhc------------------ch----hHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345677777765 57999999999986532 11 2455777889999999999999999
Q ss_pred HHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHH
Q 002877 117 AKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRL 196 (872)
Q Consensus 117 ~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~ 196 (872)
+.+.... + . .+.+.+.++++ ++.+|..++..|+.+-.. . . ..+...+.| +++.||.
T Consensus 677 ~~l~~~~-~-----~-~~~L~~~L~~~--d~~VR~~A~~aL~~~~~~-------~--~----~~l~~~L~D--~d~~VR~ 732 (897)
T PRK13800 677 RELVEVL-P-----P-APALRDHLGSP--DPVVRAAALDVLRALRAG-------D--A----ALFAAALGD--PDHRVRI 732 (897)
T ss_pred HHHHhcc-C-----c-hHHHHHHhcCC--CHHHHHHHHHHHHhhccC-------C--H----HHHHHHhcC--CCHHHHH
Confidence 8885322 1 1 24666777777 899999999998765321 0 1 134557777 7889999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCCh
Q 002877 197 AATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEE 276 (872)
Q Consensus 197 ~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 276 (872)
.|+++|..+ .. ...+...+.++++++|..+...|..+-..... .++.+....+|+++
T Consensus 733 ~Av~aL~~~----~~-----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~ 789 (897)
T PRK13800 733 EAVRALVSV----DD-----------VESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDP 789 (897)
T ss_pred HHHHHHhcc----cC-----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCH
Confidence 999999973 11 02245567899999999999999887543221 13444566788899
Q ss_pred HHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHH
Q 002877 277 AVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGL 356 (872)
Q Consensus 277 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~ 356 (872)
.+|..|+..+..+.... .+.+.+...+.+ ++ |.+|.+|..+|..
T Consensus 790 ~VR~aA~~aLg~~g~~~---------------------------~~~~~l~~aL~d-------~d--~~VR~~Aa~aL~~ 833 (897)
T PRK13800 790 LVRAAALAALAELGCPP---------------------------DDVAAATAALRA-------SA--WQVRQGAARALAG 833 (897)
T ss_pred HHHHHHHHHHHhcCCcc---------------------------hhHHHHHHHhcC-------CC--hHHHHHHHHHHHh
Confidence 99999998776664321 111223333321 12 9999999998875
Q ss_pred HHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002877 357 VARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLS 435 (872)
Q Consensus 357 l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~ 435 (872)
+. + +...+.+...+.|++|.+|.+++.+|+.+. +. +...+.+...++|+++.||..|..+|.
T Consensus 834 l~---~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~---------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 834 AA---A----DVAVPALVEALTDPHLDVRKAAVLALTRWP-GD---------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred cc---c----cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CC---------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 43 1 234467777778999999999999999962 11 134667778899999999999999886
No 63
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1e-06 Score=92.56 Aligned_cols=205 Identities=12% Similarity=0.167 Sum_probs=127.1
Q ss_pred CChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCch
Q 002877 51 KPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWP 130 (872)
Q Consensus 51 ~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~ 130 (872)
.-+-+|.-|..++-+.+-++ ++..+.. ...|.+-|.++++.|.+++..+|-++|+.. |. .+-
T Consensus 156 skpYvRKkAIl~lykvFLkY---------------PeAlr~~-FprL~EkLeDpDp~V~SAAV~VICELArKn-Pk-nyL 217 (877)
T KOG1059|consen 156 SKPYVRKKAILLLYKVFLKY---------------PEALRPC-FPRLVEKLEDPDPSVVSAAVSVICELARKN-PQ-NYL 217 (877)
T ss_pred CchHHHHHHHHHHHHHHHhh---------------hHhHhhh-HHHHHHhccCCCchHHHHHHHHHHHHHhhC-Cc-ccc
Confidence 35667777666665443222 2222222 235666778888888888888888888887 64 777
Q ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH--
Q 002877 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDF-- 208 (872)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~-- 208 (872)
.+-|.++..+...+.++. .-..+..++.+.- ++......+++.+...+.+. .|...|..++..
T Consensus 218 ~LAP~ffkllttSsNNWm-LIKiiKLF~aLtp------lEPRLgKKLieplt~li~sT--------~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWV-LIKLLKLFAALTP------LEPRLGKKLIEPITELMEST--------VAMSLLYECVNTVV 282 (877)
T ss_pred cccHHHHHHHhccCCCee-hHHHHHHHhhccc------cCchhhhhhhhHHHHHHHhh--------HHHHHHHHHHHHhe
Confidence 778888887766532442 2123333333221 11344566777777777651 233333333221
Q ss_pred ---HHhhhhh-hhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHH
Q 002877 209 ---ALTNFQN-EMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVE 284 (872)
Q Consensus 209 ---~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~ 284 (872)
+...... ......-++-+..++.+.|+..+-.++-++..++..+|+.+..|- ++++.++.|.|+.+|..|++
T Consensus 283 a~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k----dlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK----DLILRCLDDKDESIRLRALD 358 (877)
T ss_pred eehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH----HHHHHHhccCCchhHHHHHH
Confidence 1111111 111223455566677788999999999999999999988776554 45567889999999999999
Q ss_pred hHhHHhHh
Q 002877 285 FWSSICDE 292 (872)
Q Consensus 285 ~l~~l~~~ 292 (872)
.+..++..
T Consensus 359 Ll~gmVsk 366 (877)
T KOG1059|consen 359 LLYGMVSK 366 (877)
T ss_pred HHHHHhhh
Confidence 99888774
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=5.5e-07 Score=95.91 Aligned_cols=401 Identities=13% Similarity=0.136 Sum_probs=208.6
Q ss_pred hhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcc
Q 002877 375 ANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPE 454 (872)
Q Consensus 375 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (872)
+.+.+++.-.+..+.++..-+.+.. ...+--+...+.+-|++++..|...|+.++|+++ ..+
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~-----qdvllLltNslknDL~s~nq~vVglAL~alg~i~-------------s~E 138 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDER-----QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC-------------SPE 138 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccc-----hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC-------------CHH
Confidence 3445667666677777666666543 1233345667778888899889988888888875 245
Q ss_pred cHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002877 455 NLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNE 533 (872)
Q Consensus 455 ~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~ 533 (872)
..+.+.|.+...++. ++.||..|..|...+.... |+... .+++..-+.+.. .+..|..+.+..+..
T Consensus 139 mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~------P~l~e----~f~~~~~~lL~e---k~hGVL~~~l~l~~e 205 (866)
T KOG1062|consen 139 MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV------PDLVE----HFVIAFRKLLCE---KHHGVLIAGLHLITE 205 (866)
T ss_pred HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC------chHHH----HhhHHHHHHHhh---cCCceeeeHHHHHHH
Confidence 677788888888887 9999999999999888775 43333 333444444442 223456677777777
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHH
Q 002877 534 VVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVL 613 (872)
Q Consensus 534 l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 613 (872)
+++..+ +...|+..+.|.++.++++.........-|- ...-.||++--+=.
T Consensus 206 ~c~~~~--~~l~~fr~l~~~lV~iLk~l~~~~yspeydv---------------------------~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 206 LCKISP--DALSYFRDLVPSLVKILKQLTNSGYSPEYDV---------------------------HGISDPFLQIRILR 256 (866)
T ss_pred HHhcCH--HHHHHHHHHHHHHHHHHHHHhcCCCCCccCc---------------------------cCCCchHHHHHHHH
Confidence 777654 4567888888888888887754322211110 00223444433333
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccc-----
Q 002877 614 FLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLP----- 688 (872)
Q Consensus 614 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~----- 688 (872)
++.++...+....+..-..++.++......-----.-++..+...+.-..+..+|..|+.+||.+..+-..++.-
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 445555555555555555556555443210000000111111111111122346666666666654332211110
Q ss_pred ---------c-HHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHH
Q 002877 689 ---------F-CDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELI 758 (872)
Q Consensus 689 ---------~-~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~ 758 (872)
- +.+==..++.+|+++ +..+|..++...-.+... .........++..+...
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~Dp--D~SIkrralELs~~lvn~--~Nv~~mv~eLl~fL~~~--------------- 397 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDP--DVSIKRRALELSYALVNE--SNVRVMVKELLEFLESS--------------- 397 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhc---------------
Confidence 0 011112455666666 666777766666655442 22333333333333322
Q ss_pred HHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCch
Q 002877 759 DYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSS 838 (872)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~ 838 (872)
.++.|..+.. +++..... ..+.-.=|++.++..+... ....++++-.+.+.+|++ .++. .+..
T Consensus 398 --d~~~k~~~as---~I~~laEk-faP~k~W~idtml~Vl~~a--G~~V~~dv~~nll~LIa~---~~~e------~~~y 460 (866)
T KOG1062|consen 398 --DEDFKADIAS---KIAELAEK-FAPDKRWHIDTMLKVLKTA--GDFVNDDVVNNLLRLIAN---AFQE------LHEY 460 (866)
T ss_pred --cHHHHHHHHH---HHHHHHHh-cCCcchhHHHHHHHHHHhc--ccccchhhHHHHHHHHhc---CCcc------hhhH
Confidence 0234443322 22222211 1112223445555555433 222455555554554443 1111 2222
Q ss_pred HHHHHHHHHh-----cCCcHHHHHHHHHHHHHHHHHhc
Q 002877 839 FCNDFMSECL-----RSDDEQLKETAGWTQGMINRVLV 871 (872)
Q Consensus 839 ~v~~ll~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 871 (872)
.+..++.... ....+.+.+.|+|++|.-+..++
T Consensus 461 ~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll 498 (866)
T KOG1062|consen 461 AVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLL 498 (866)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhh
Confidence 3333333311 23567778999999999886554
No 65
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=9.4e-05 Score=84.93 Aligned_cols=440 Identities=13% Similarity=0.122 Sum_probs=233.6
Q ss_pred cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 364 EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 364 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
..+...+..|...+..+....|-.|+.|++.+++... ..+ .-+.+-..+.+.+.|.+..||++|...+|++.-..+
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp-~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~- 887 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP-SVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP- 887 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh-Hhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH-
Confidence 3455566667777777778899999999999998642 211 234666778889999999999999999999986554
Q ss_pred CCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchh
Q 002877 444 PATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSK 522 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~ 522 (872)
+++.+....+...+.| ...||.++...+..+|+.. ++. +-+..++..++...+ +++.+
T Consensus 888 ----------e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~------pdf--~~i~~~cakmlrRv~---DEEg~ 946 (1692)
T KOG1020|consen 888 ----------ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET------PDF--SKIVDMCAKMLRRVN---DEEGN 946 (1692)
T ss_pred ----------HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC------CCh--hhHHHHHHHHHHHhc---cchhH
Confidence 4778888888888998 8999999999999999885 221 223445555555554 45566
Q ss_pred HHHHHHHHHHHHHhcCCCc-ccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHH--HHHHcCCCccc
Q 002877 523 LRSAAYETLNEVVRCSNIT-ETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQV--IIQKFSSTDAT 599 (872)
Q Consensus 523 vr~~a~~al~~l~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~~~~~ 599 (872)
++.-+.+.+..+.-.-... ...+-...-++...+.....+.. . ....+.+...++..-.. ...+..+
T Consensus 947 I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~---~---~~~~eqLl~~ilk~~~~~~~~~~~~~---- 1016 (1692)
T KOG1020|consen 947 IKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDL---M---NDWLEQLLDHILKFYLLKTMKESVKP---- 1016 (1692)
T ss_pred HHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHH---h---cChHHHHHHHHHHHHHhhhhhhhhhH----
Confidence 7888888888776433201 22233333334444443333210 0 01111111111111000 0000111
Q ss_pred hhhchhhHHHHHHHHHHHHccC------------ChhHH-HHHHHHHHHHHHHhhhHHH-hhhHHHHHHHHhhhcccchH
Q 002877 600 KSFILQTADQIMVLFLRVFACR------------SSTVH-EEAMLAIGALAYATGPEFA-KYMPEFYQYLQMGLQNSEEY 665 (872)
Q Consensus 600 ~~~~~~~~~~l~~~l~~~l~~~------------~~~v~-~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~ 665 (872)
....-+...++.+..++... ...++ ...+..|..++..-+.-+. .|+..+.|+|.......++.
T Consensus 1017 --v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~ 1094 (1692)
T KOG1020|consen 1017 --VALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEA 1094 (1692)
T ss_pred --HHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHH
Confidence 11111233444444444322 12222 2344556666666666555 68888888887553333333
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q 002877 666 QVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 666 ~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~ 745 (872)
.+....+..+.....-...--..++..+=..|+..+... ....-..+..|+|.++......+ ..+..++..++..+.
T Consensus 1095 ~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~--g~a~V~~~vsCl~sl~~k~~~~~-~~v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1095 QFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKM--GMATVVEAVSCLGSLATKRTDGA-KVVKACFSCYLKLLE 1171 (1692)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHH
Confidence 344333333333322222111223334444445444433 22233466788888887643332 234444444444433
Q ss_pred hccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchh----hhhh----hhhhHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 002877 746 ACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSA----RAEV----MMPYAQHLLQFIELIFKDNHRDENVTKAAVA 817 (872)
Q Consensus 746 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~----~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~ 817 (872)
.-.....++.+ .-+...++.. +-++..+.+-..-. .++. .....+.++..+..+.+. .+.++|+-|+.
T Consensus 1172 ~~k~s~~en~~-~~~~p~l~Rs-iftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~--~~~~lR~~al~ 1247 (1692)
T KOG1020|consen 1172 VIKSSNNENAD-IVNFPKLQRS-IFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKD--KDGELRRKALI 1247 (1692)
T ss_pred HHHhccccccc-hhhhHHHHHH-HHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHh--hhhHHHHHHHH
Confidence 21101000001 1122233322 33343444321110 1111 113335555555555444 46999999999
Q ss_pred HHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCc
Q 002877 818 VMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDD 852 (872)
Q Consensus 818 ~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~ 852 (872)
.+|.+|..-+.- +++.-+..++.+-+.+..
T Consensus 1248 ~Lg~~ci~hp~l-----~~~~~v~nly~~ila~~n 1277 (1692)
T KOG1020|consen 1248 NLGFICIQHPSL-----FTSREVLNLYDEILADDN 1277 (1692)
T ss_pred HHHHHHhhCchh-----hhhHHHHHHHHHHHhhhc
Confidence 999999887763 445556666666455433
No 66
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=99.07 E-value=1e-05 Score=87.89 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHh
Q 002877 646 KYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD-DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALA 724 (872)
Q Consensus 646 ~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~ 724 (872)
.++.+++|.+.+... ..+...+.....+|+.+..+.+ +.+.|.++.++|.|++.|+-+ +..+|..+..++..+...
T Consensus 863 RfF~~ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHHHhhHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC--ccchhhhHhhhhhHHHHh
Confidence 467789999998887 3445588888999998888876 678899999999999999998 889999999999999988
Q ss_pred hccchhhhHHHHHHHHHHHHHhccccCCCchHHHHH-HHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhc
Q 002877 725 IGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDY-GNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFK 803 (872)
Q Consensus 725 ~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~ 803 (872)
.+.-...|++.++|.++..-.. .++ .-.+|+.+++|+..+...+- .....||-+.++..+.+.+.
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~-----------~~n~~~~VR~~ALqcL~aL~~~~P---~~~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSD-----------NDNNMMVVREDALQCLNALTRRLP---TKSLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCC-----------CCcchhHHHHHHHHHHHHHhccCC---CcccccccHHHHHHhhhccC
Confidence 8888888999999999986221 112 24689999999888777443 23478999999999999988
Q ss_pred CCCCCHhHHHHHHHHHHHH
Q 002877 804 DNHRDENVTKAAVAVMGDL 822 (872)
Q Consensus 804 ~~~~~~~~~~~a~~~l~~l 822 (872)
| ..+-+|+.|..+=+..
T Consensus 1006 D--kKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 1006 D--KKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred c--HHHHHHHHHHHHhhhh
Confidence 7 4589999988765543
No 67
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.01 E-value=1.9e-09 Score=86.24 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHH
Q 002877 384 CREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVL 463 (872)
Q Consensus 384 ~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 463 (872)
.|++++.++++++.+.+ +.+.++++.++|.++.++.|++++||+.||.++.++++.... ..-++++.+++.|
T Consensus 2 ~R~ggli~Laa~ai~l~-~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-------~~l~~f~~IF~~L 73 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALG-KDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-------EILPYFNEIFDAL 73 (97)
T ss_pred chhHHHHHHHHHHHHch-HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 58999999999999886 669999999999999999999999999999999999998886 4556899999999
Q ss_pred HHHhhc-ChHHHHHHHHHHHHHH
Q 002877 464 LESIKD-APNVAEKVCGAIYYLA 485 (872)
Q Consensus 464 ~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
.+.+.| +++||..|.. +.++.
T Consensus 74 ~kl~~D~d~~Vr~~a~~-Ld~ll 95 (97)
T PF12755_consen 74 CKLSADPDENVRSAAEL-LDRLL 95 (97)
T ss_pred HHHHcCCchhHHHHHHH-HHHHh
Confidence 999999 9999887754 55544
No 68
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.99 E-value=1.5e-09 Score=85.10 Aligned_cols=76 Identities=39% Similarity=0.531 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhc
Q 002877 23 AEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLA 102 (872)
Q Consensus 23 A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~ 102 (872)
||++|.+++.++ |+|+..|++++.+++.+..+|++|+++|||.+.++|.... ...|..++++.+..||+.|++.|.
T Consensus 1 AE~~L~~~~~~~-p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~---~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQN-PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSK---QKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSC-TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHH---HHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhh---ccCCCCCCHHHHHHHHHHHHHHHc
Confidence 799999999998 8999999999988777999999999999999999887544 567889999999999999999774
No 69
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.98 E-value=7e-06 Score=82.21 Aligned_cols=583 Identities=13% Similarity=0.119 Sum_probs=295.9
Q ss_pred cHHHHHHHHHHHHHhhhccCccccchhhHHHHHH---------HHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhh-
Q 002877 146 LAALKQATLETLGYVCEEISHQDLVQDEVNAVLT---------AVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQN- 215 (872)
Q Consensus 146 ~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~---------~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~- 215 (872)
...+|.+|+.++..+...+....+ ..++..++| .+.-.++| ++...|..|+..+..++.--+.....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~-ygyw~~~~pd~~~~g~p~l~~l~lkd--~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVL-YGYWSAFIPDTPELGSPSLMTLTLKD--PSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhh-hceeeeecCCCCCCCCceeeEEecCC--CChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 567899999999988887754444 444444443 12335666 78899999999988877522211110
Q ss_pred -----hhHHHH----------HHHHHHHhh-cCCcHHHHHHHHHHHHHHHHhhhh-hhH-HhHHHHHHHHHHHhcCCChH
Q 002877 216 -----EMERNY----------IMKVVCETA-KSKEVEIRQAAFECLVSIASTYYE-VLE-PYMQTLFELTSNAVKGDEEA 277 (872)
Q Consensus 216 -----~~~~~~----------ll~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~-~~~-~~l~~l~~~~~~~~~~~~~~ 277 (872)
..+.++ .-..+...+ ....+.+...+++|+..++...|- .++ .++-.+++.+-..+++.|++
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 001111 111122222 234567788899999999887642 222 33446677777778889999
Q ss_pred HHHHHHHhHhHHhHhhhhh---hh--hcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhccc-------CCcc-cCCCCc
Q 002877 278 VALQAVEFWSSICDEEIEL---QE--FENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQE-------EDQD-QDDSIW 344 (872)
Q Consensus 278 ~~~~al~~l~~l~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~-------~d~~-~d~~~~ 344 (872)
++..++-.+..++...... .. ...+... ....+|... |-..+.+...+ .|+. ..+..|
T Consensus 166 v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~--n~~~~h~s~-------~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 236 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSS--NSATPHLSP-------PDWWKKLPAGPSLEETSVSSPKGSSEPCW 236 (728)
T ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccc--cccCCCCCC-------hHHHHhcCCCchhhhhccCCccCCCCCcc
Confidence 9999998888887653321 10 0000000 000000000 00111111110 0000 001112
Q ss_pred chhhhHHHHHHHHHhhcCCcchhchHHHHHhhccC--CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC
Q 002877 345 NISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVK--SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE 422 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~ 422 (872)
-+|.. ..++-..++.. -...-....+.+ .-..+|-.++..+..++..++ ....++.++...+-..+.+.
T Consensus 237 ~i~~~-----~~i~~~~~~~s--~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~ 307 (728)
T KOG4535|consen 237 LIRLC-----ISIVVLPKEDS--CSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEA 307 (728)
T ss_pred eeeee-----eeeeecCCccc--cchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCC
Confidence 22210 00000000000 000001111111 012356666667777776542 34556778888888899999
Q ss_pred cHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHH------HHhhc--ChHHHHHHHHHHHHHHHhhccCCCC
Q 002877 423 NNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLL------ESIKD--APNVAEKVCGAIYYLAQGYEDAGPS 494 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~------~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~ 494 (872)
.|.++..+..++..+......+.-. ..-..+....-+...+ ...-| .+..+.++|.++.++....
T Consensus 308 ~p~~~l~~a~ll~~lg~~lv~~~~P-~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~------ 380 (728)
T KOG4535|consen 308 DPSIQLHGAKLLEELGTGLIQQYKP-DSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEA------ 380 (728)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhcCC-CcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchh------
Confidence 9999999999988876554421000 0001111111011111 11123 5667778888887776432
Q ss_pred CCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhh
Q 002877 495 SSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREK 574 (872)
Q Consensus 495 ~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 574 (872)
...+..--....+..+...+ |.++.-++.+|..++...+-+.+...-.-+...-...+...+. +.
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~--d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~-------------d~ 445 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCN--DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLE-------------DK 445 (728)
T ss_pred hcCCCCcchhhhHHHHhccc--chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhh-------------hH
Confidence 11111111122333333333 4456667888888777666554411111122222222222222 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC-ccchhhchhhHHHHHHHHHHHHccC---ChhHHHHHHHHHHHHHHHhhhHHHhhhHH
Q 002877 575 QGDLQASLCGVLQVIIQKFSST-DATKSFILQTADQIMVLFLRVFACR---SSTVHEEAMLAIGALAYATGPEFAKYMPE 650 (872)
Q Consensus 575 ~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~l~~ 650 (872)
....|.+..+++++|-..+-.. +.+.+.-..+...++..+...-... ...|+..++.+++++......-..+-+..
T Consensus 446 ~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e 525 (728)
T KOG4535|consen 446 SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE 525 (728)
T ss_pred hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH
Confidence 2345667777887776655431 1111111112223333333332221 56799999999999876554333333333
Q ss_pred HHHH----HHhhhcccchHhHHHHHHHHHHHHHHHhc--CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHh
Q 002877 651 FYQY----LQMGLQNSEEYQVCAITVGVVGDVCRALD--DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALA 724 (872)
Q Consensus 651 i~~~----l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~ 724 (872)
+++. +.....-.....|+=+||.++|++.++-. -+-.++.+.+++.|...+.+.. +..+|..+..++..-+..
T Consensus 526 ~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~-NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 526 IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK-NFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc-cceEeehhhhhhcCCCCc
Confidence 3332 22111112234589999999999987653 3446788999999999887654 788999999888875543
Q ss_pred hccchhhhHHHHHHHHHHHHHhccccCCCchHHHHH--HHHHHHHHHHHHHhHhhc
Q 002877 725 IGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDY--GNQLRSSIFEAYSGILQG 778 (872)
Q Consensus 725 ~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~ 778 (872)
+++...++-....++..+....+. .+..+| -+.++.+.+.++.++..-
T Consensus 605 --e~~~d~~~Lsw~~lv~aLi~s~~~----v~f~eY~~~Dsl~~q~c~av~hll~l 654 (728)
T KOG4535|consen 605 --EQYGDQYALSWNALVTALQKSEDT----IDFLEYKYCDSLRTQICQALIHLLSL 654 (728)
T ss_pred --ccchhHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555442111 122333 356777777776665543
No 70
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.98 E-value=4.8e-06 Score=89.08 Aligned_cols=367 Identities=13% Similarity=0.175 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC-CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHH
Q 002877 236 EIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG-DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHF 314 (872)
Q Consensus 236 ~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (872)
.....+++.+..+... +..+......++..+....+. .+.++...++..+..+.+...... .. .-
T Consensus 17 ~~~~~~L~~l~~ls~~-~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~------------~~-~~ 82 (415)
T PF12460_consen 17 SNYERILEALAALSTS-PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK------------QF-ED 82 (415)
T ss_pred hHHHHHHHHHHHHHCC-hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc------------cc-ch
Confidence 4556677777776653 333443344444444333332 355666777777777766532110 00 01
Q ss_pred HHHhHHh-hHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhcc----------CCC--
Q 002877 315 IEKARSS-LVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIV----------KSD-- 381 (872)
Q Consensus 315 ~~~~l~~-l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~----------~~~-- 381 (872)
...+... ++|.++...........+.+ +.+-..++..+..+....+..--..++..+...+. +..
T Consensus 83 ~~~y~~~~lv~~l~~~~~~~~~~~~~~~--~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 83 NSWYFHRILVPRLFELALQASDQSSDLD--DRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred HHHHHHhHHHHHHHHHHHhhcccccccc--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 1223333 66777666544322211111 34555566677777776653222222322222111 111
Q ss_pred -cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHH
Q 002877 382 -WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM-RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRI 459 (872)
Q Consensus 382 -~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 459 (872)
+..+.. +..+..+..+..++..-+...+++..++... ...++..|..++.+++.+....+. .+.+..+
T Consensus 161 ~~~~~~~-~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---------~~~l~~~ 230 (415)
T PF12460_consen 161 SEQQSRL-VILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---------DDDLDEF 230 (415)
T ss_pred ccccccH-HHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---------hhhHHHH
Confidence 223232 3333344444433333234555666666654 445589999999999988876543 2367777
Q ss_pred HHHHHHHh-hc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhc
Q 002877 460 LTVLLESI-KD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRC 537 (872)
Q Consensus 460 l~~l~~~l-~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~ 537 (872)
+..+...+ .. .+..+..+...+.-+.++.- -...|....+++.++..+.. ..+...+.++++.++..
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv------~R~~~~~~~~~~~L~~lL~~-----~~~g~~aA~~f~il~~d 299 (415)
T PF12460_consen 231 LDSLLQSISSSEDSELRPQALEILIWITKALV------MRGHPLATELLDKLLELLSS-----PELGQQAAKAFGILLSD 299 (415)
T ss_pred HHHHHhhhcccCCcchhHHHHHHHHHHHHHHH------HcCCchHHHHHHHHHHHhCC-----hhhHHHHHHHHhhHhcC
Confidence 77777766 22 55555566665555555541 11236667778888888863 33478889999988877
Q ss_pred CC-C------c-----ccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchh
Q 002877 538 SN-I------T-----ETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQ 605 (872)
Q Consensus 538 ~~-~------~-----~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 605 (872)
.+ . . .-+.++..++|.+++.+...- ...+...+.++..+++.++.+ .+.+
T Consensus 300 ~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-------------~~~k~~yL~ALs~ll~~vP~~-----vl~~ 361 (415)
T PF12460_consen 300 SDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-------------DEIKSNYLTALSHLLKNVPKS-----VLLP 361 (415)
T ss_pred cHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-------------hhhHHHHHHHHHHHHhhCCHH-----HHHH
Confidence 33 0 1 135677778888877777531 115567788999999988875 7889
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHh
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQM 657 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 657 (872)
+++.+++.+++.++.++..++..++.++..+....++.+.+|++.++|.+++
T Consensus 362 ~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 362 ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998888999999999999875
No 71
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=5.3e-05 Score=80.10 Aligned_cols=248 Identities=15% Similarity=0.225 Sum_probs=161.0
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN 301 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 301 (872)
+.+=++.++++..+-+|+.|+-.+-.+.-.||+.+.+.++.+.+ -+.++|+.+...|...++.+++..+
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----kLeDpDp~V~SAAV~VICELArKnP------- 213 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----KLEDPDPSVVSAAVSVICELARKNP------- 213 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----hccCCCchHHHHHHHHHHHHHhhCC-------
Confidence 55566777888899999999999999999999998886666554 5689999999999999888887633
Q ss_pred CCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC--CcchhchHHHHHhhccC
Q 002877 302 PETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG--DEVVPLVMPFVEANIVK 379 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~l~~ 379 (872)
++|+ ++.|.++..|+....+ |-+-+ .++.++...| ..+-.-+++-+.+.+.+
T Consensus 214 --------------knyL-~LAP~ffkllttSsNN-------WmLIK----iiKLF~aLtplEPRLgKKLieplt~li~s 267 (877)
T KOG1059|consen 214 --------------QNYL-QLAPLFYKLLVTSSNN-------WVLIK----LLKLFAALTPLEPRLGKKLIEPITELMES 267 (877)
T ss_pred --------------cccc-cccHHHHHHHhccCCC-------eehHH----HHHHHhhccccCchhhhhhhhHHHHHHHh
Confidence 1222 4889999999864322 85443 3333333322 11122233334444333
Q ss_pred CCc-chHHHHHHHHHHh-----hcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCc
Q 002877 380 SDW-RCREAATYAFGSV-----LEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISP 453 (872)
Q Consensus 380 ~~~-~~r~aal~~l~~i-----~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
..- ..-+ -|++.+ ..+.. +. ..-+.-.+..+-..+.|.++..++-++.+++.+++..+.
T Consensus 268 T~AmSLlY---ECvNTVVa~s~s~g~~-d~-~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---------- 332 (877)
T KOG1059|consen 268 TVAMSLLY---ECVNTVVAVSMSSGMS-DH-SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---------- 332 (877)
T ss_pred hHHHHHHH---HHHHHheeehhccCCC-Cc-HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH----------
Confidence 220 0111 133333 22331 21 223445666777777899999999999999999875543
Q ss_pred ccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHH
Q 002877 454 ENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLN 532 (872)
Q Consensus 454 ~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~ 532 (872)
.+..--+.++++|.| ++.+|.+|...+..++.. ..+..|+..|+..+...+. ...|.. .+.
T Consensus 333 -~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk------------kNl~eIVk~LM~~~~~ae~--t~yrde---ll~ 394 (877)
T KOG1059|consen 333 -AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK------------KNLMEIVKTLMKHVEKAEG--TNYRDE---LLT 394 (877)
T ss_pred -HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHhccc--hhHHHH---HHH
Confidence 555666778899999 999999999999888754 3456777777777764442 333544 444
Q ss_pred HHHhcCC
Q 002877 533 EVVRCSN 539 (872)
Q Consensus 533 ~l~~~~~ 539 (872)
.++..+.
T Consensus 395 ~II~iCS 401 (877)
T KOG1059|consen 395 RIISICS 401 (877)
T ss_pred HHHHHhh
Confidence 4444443
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.6e-06 Score=90.07 Aligned_cols=257 Identities=13% Similarity=0.116 Sum_probs=160.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCChhHHHHHHHHHhhcccCCcccchHHHHhhhh
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVN-NEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWL 83 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~ 83 (872)
+-.++.++...|-+.++....+|..+...+|...+.+.-.++.+ ++.++.+|.+|...+...-
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~---------------- 114 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR---------------- 114 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----------------
Confidence 45677778888999999999999999888777776666666655 3567899999987764321
Q ss_pred cCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhc
Q 002877 84 AIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEE 163 (872)
Q Consensus 84 ~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 163 (872)
-+....++.+.+.+++.+.++.+|+.++.+++.+...+.....-..+++.|.+.+.++ ++.+...|+..+..+.+.
T Consensus 115 --v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~--~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 115 --VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS--NPMVVANALAALSEIHES 190 (734)
T ss_pred --ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC--CchHHHHHHHHHHHHHHh
Confidence 1345567888899999999999999999999999877633335567888999999887 899999999999998887
Q ss_pred cCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 002877 164 ISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFE 243 (872)
Q Consensus 164 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 243 (872)
-..... ......+...++..++.- ..=-+...++++.. +..+.- .+-..+.+.+...++.-++.+...+..
T Consensus 191 ~~~~~~-~~l~~~~~~~lL~al~ec--~EW~qi~IL~~l~~---y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsavK 261 (734)
T KOG1061|consen 191 HPSVNL-LELNPQLINKLLEALNEC--TEWGQIFILDCLAE---YVPKDS---REAEDICERLTPRLQHANSAVVLSAVK 261 (734)
T ss_pred CCCCCc-ccccHHHHHHHHHHHHHh--hhhhHHHHHHHHHh---cCCCCc---hhHHHHHHHhhhhhccCCcceEeehHH
Confidence 521111 222333444444444431 11122233333332 322211 111235666666666666666666777
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhH
Q 002877 244 CLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICD 291 (872)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~ 291 (872)
.+..++......-......+-+-++..+..+. ++..-++.-+.-+..
T Consensus 262 v~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 262 VILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQ 308 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHH
Confidence 77666655444222223333333333333333 555555554444443
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.88 E-value=0.00018 Score=74.10 Aligned_cols=96 Identities=14% Similarity=0.027 Sum_probs=68.6
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILT 461 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 461 (872)
.+...|.+..+..+.+.. +.-.+.+.++.|++-..++|.-..|...+++++.+++...- ..+.+.+.+.
T Consensus 238 mknq~a~V~lvr~~~~ll--~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv---------~~~~~~~~vs 306 (898)
T COG5240 238 MKNQLAGVLLVRATVELL--KENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV---------GSQFVDQTVS 306 (898)
T ss_pred cccchhheehHHHHHHHH--HhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc---------CHHHHHHHHH
Confidence 344456655555554433 33345677888999999999889999999999988876442 2456777777
Q ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 462 VLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 462 ~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
.|-..|.. ....|-+|...+..++...
T Consensus 307 ~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 307 SLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 77777776 6667778888888888775
No 74
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.86 E-value=0.00036 Score=76.39 Aligned_cols=134 Identities=13% Similarity=0.201 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhh
Q 002877 580 ASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGL 659 (872)
Q Consensus 580 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 659 (872)
.....+|...+..++.+ .+.|.++.+++.++++++-++..+|-.++.++..+....+.-...|++.++|.++..-
T Consensus 885 ~~yl~~LshVl~~vP~~-----vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls 959 (1030)
T KOG1967|consen 885 HNYLEALSHVLTNVPKQ-----VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLS 959 (1030)
T ss_pred hHHHHHHHHHHhcCCHH-----hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcC
Confidence 45566777777776665 8889999999999999999999999999999999888888888889999999998776
Q ss_pred cccch--HhHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHH
Q 002877 660 QNSEE--YQVCAITVGVVGDVCRALD-DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGD 720 (872)
Q Consensus 660 ~~~~~--~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~ 720 (872)
.+.++ .-||..|+.+++.+.+..+ ..+.+|-+.++..+.+.|+++ .+-+|+.|..+=+.
T Consensus 960 ~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk--KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 960 SDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK--KRLVRKEAVDTRQN 1021 (1030)
T ss_pred CCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH--HHHHHHHHHHHhhh
Confidence 65443 4689999999999999665 678899999999999999998 78889888876544
No 75
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.82 E-value=0.00025 Score=73.03 Aligned_cols=482 Identities=12% Similarity=0.094 Sum_probs=258.7
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccH-HHHHHHHHHHHHhhhc
Q 002877 85 IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLA-ALKQATLETLGYVCEE 163 (872)
Q Consensus 85 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~-~~r~~al~~l~~l~~~ 163 (872)
.++....++.-.+.+.+++.++.+|...-.+|..+.... . .---....++.-+..+ .+ ..|-.|++.|.+++..
T Consensus 58 f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t-e--dvlm~tssiMkD~~~g--~~~~~kp~AiRsL~~Vid~ 132 (898)
T COG5240 58 FPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT-E--DVLMGTSSIMKDLNGG--VPDDVKPMAIRSLFSVIDG 132 (898)
T ss_pred chhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc-h--hhhHHHHHHHHhhccC--CccccccHHHHHHHHhcCc
Confidence 455666677778889999999999998888888776543 1 1112234455545444 33 5777888888777764
Q ss_pred cCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------------
Q 002877 164 ISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK------------ 231 (872)
Q Consensus 164 ~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------------ 231 (872)
-. ....+.++ -+++-+ ++..++.+|+-.-.++++.-......|.. ..-.++...-+
T Consensus 133 ~t-----v~~~er~l---~~a~Vs--~~~a~~saalv~aYhLlp~~~~~~~rw~n--e~qeav~~l~q~p~~~~n~gy~P 200 (898)
T COG5240 133 ET-----VYDFERYL---NQAFVS--TSMARRSAALVVAYHLLPNNFNQTKRWLN--ETQEAVLDLKQFPNQHGNEGYEP 200 (898)
T ss_pred ch-----hhhHHHHh---hhhccc--cchhhhhhHHHHhhhhccccHHHHHHHHH--HHHHHHhhHhhCcCccCCcccCC
Confidence 31 12223332 344555 56778888877766665432222222211 11112211111
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCc
Q 002877 232 SKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPN 311 (872)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 311 (872)
..++-..-.++..|..+-... .+ -+..+++.+....+-.+.-.....+.....+... +
T Consensus 201 n~~~isqYHalGlLyq~kr~d--km--a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~------------------n 258 (898)
T COG5240 201 NGNPISQYHALGLLYQSKRTD--KM--AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE------------------N 258 (898)
T ss_pred CCChHHHHHHHHHHHHHhccc--HH--HHHHHHHHhhcccccccchhheehHHHHHHHHHh------------------C
Confidence 111222223333333221110 00 0112222222111101110011111111111111 1
Q ss_pred hHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhc-CCcchhchHHHHHhhccCCCcchHHHHHH
Q 002877 312 YHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTV-GDEVVPLVMPFVEANIVKSDWRCREAATY 390 (872)
Q Consensus 312 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~ 390 (872)
.+.+.++.|.|-.|+...- ..+...++..+..++... +.+.....+..+...+.++....|.+|+.
T Consensus 259 ----~q~~~q~rpfL~~wls~k~---------emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~R 325 (898)
T COG5240 259 ----SQALLQLRPFLNSWLSDKF---------EMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMR 325 (898)
T ss_pred ----hHHHHHHHHHHHHHhcCcc---------hhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 2234567888888886422 235555566676766654 77788888888999999998899999999
Q ss_pred HHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-
Q 002877 391 AFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD- 469 (872)
Q Consensus 391 ~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d- 469 (872)
.++.++... |+.+. ..-+-+-....|.| |..+.+++..+.+. ...+.+..++..+...+.|
T Consensus 326 iln~lam~~-P~kv~----vcN~evEsLIsd~N---r~IstyAITtLLKT----------Gt~e~idrLv~~I~sfvhD~ 387 (898)
T COG5240 326 ILNQLAMKY-PQKVS----VCNKEVESLISDEN---RTISTYAITTLLKT----------GTEETIDRLVNLIPSFVHDM 387 (898)
T ss_pred HHHHHHhhC-Cceee----ecChhHHHHhhccc---ccchHHHHHHHHHc----------CchhhHHHHHHHHHHHHHhh
Confidence 999998755 34322 12233344446666 44445555555532 2345677777766666666
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHH
Q 002877 470 APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAE 549 (872)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~ 549 (872)
....+..+..++..++-.+ +..-..|+ ..|...+.. ....+.+..+.++|..+++..| +. -+.
T Consensus 388 SD~FKiI~ida~rsLsl~F------p~k~~s~l----~FL~~~L~~--eGg~eFK~~~Vdaisd~~~~~p-~s----kEr 450 (898)
T COG5240 388 SDGFKIIAIDALRSLSLLF------PSKKLSYL----DFLGSSLLQ--EGGLEFKKYMVDAISDAMENDP-DS----KER 450 (898)
T ss_pred ccCceEEeHHHHHHHHhhC------cHHHHHHH----HHHHHHHHh--cccchHHHHHHHHHHHHHhhCc-hH----HHH
Confidence 4444455667777777766 44433443 444444431 2345568899999999998887 32 223
Q ss_pred HHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHH
Q 002877 550 LLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEA 629 (872)
Q Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a 629 (872)
.+..++..++.+ ++.++ ....|+.+-+..+. .+.-..|+-.+++.++ |+ +..+|.+|
T Consensus 451 aLe~LC~fIEDc------------ey~~I---~vrIL~iLG~EgP~----a~~P~~yvrhIyNR~i--LE--N~ivRsaA 507 (898)
T COG5240 451 ALEVLCTFIEDC------------EYHQI---TVRILGILGREGPR----AKTPGKYVRHIYNRLI--LE--NNIVRSAA 507 (898)
T ss_pred HHHHHHHHHhhc------------chhHH---HHHHHHHhcccCCC----CCCcchHHHHHHHHHH--Hh--hhHHHHHH
Confidence 334444444432 11111 12233322221111 1122336666777654 33 46799999
Q ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHH
Q 002877 630 MLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVC 679 (872)
Q Consensus 630 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 679 (872)
+.+++.++.+....+.+ ..+...+..++.+.+ .++|..|..++..+-
T Consensus 508 v~aLskf~ln~~d~~~~--~sv~~~lkRclnD~D-deVRdrAsf~l~~~~ 554 (898)
T COG5240 508 VQALSKFALNISDVVSP--QSVENALKRCLNDQD-DEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHhccCccccccH--HHHHHHHHHHhhccc-HHHHHHHHHHHHhhh
Confidence 99999988766554332 244555666666654 469988888777664
No 76
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.7e-05 Score=82.55 Aligned_cols=425 Identities=13% Similarity=0.168 Sum_probs=237.4
Q ss_pred HHHHHHHhh--cCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHH
Q 002877 352 TCLGLVART--VGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDT 429 (872)
Q Consensus 352 ~~l~~l~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~ 429 (872)
++++.+... .|+.+-..++-++...+.+.+...++--+.-+..+-...+...+.+.+--+-..+-.-|++||..+|..
T Consensus 39 eamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~ 118 (948)
T KOG1058|consen 39 EAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGS 118 (948)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcch
Confidence 344444433 256665555666666666666555554444444333222212233333334456667789999999999
Q ss_pred HHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHH
Q 002877 430 TAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAE 508 (872)
Q Consensus 430 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~ 508 (872)
+++.+.++ ..++.+++++|.+..++.. ++-||.+|..|+..+.+. .+.+.|-.+.++..
T Consensus 119 TLRFLckL-------------kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-------~~~L~pDapeLi~~ 178 (948)
T KOG1058|consen 119 TLRFLCKL-------------KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-------FEHLIPDAPELIES 178 (948)
T ss_pred hhhhhhhc-------------CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-------hhhhcCChHHHHHH
Confidence 98887664 3457889999999999998 999999999999999887 34555666666665
Q ss_pred HHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHH
Q 002877 509 LLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQV 588 (872)
Q Consensus 509 l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 588 (872)
.+..=+ | ...++.|+-. +....+ +....|+..-+..+- .....++.-+.+.+..
T Consensus 179 fL~~e~--D---psCkRNAFi~---L~~~D~-ErAl~Yl~~~idqi~-----------------~~~~~LqlViVE~Irk 232 (948)
T KOG1058|consen 179 FLLTEQ--D---PSCKRNAFLM---LFTTDP-ERALNYLLSNIDQIP-----------------SFNDSLQLVIVELIRK 232 (948)
T ss_pred HHHhcc--C---chhHHHHHHH---HHhcCH-HHHHHHHHhhHhhcc-----------------CccHHHHHHHHHHHHH
Confidence 554322 2 3335544433 333333 333333332221110 0001122222233322
Q ss_pred HHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHH
Q 002877 589 IIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVC 668 (872)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~ 668 (872)
.+..-+. .-...+..++..|.++++.++-.|...+-.+.. .+..+.+-.+.++..+.+ ..+..++
T Consensus 233 v~~~~p~----------~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa~~~i~l~~k----esdnnvk 297 (948)
T KOG1058|consen 233 VCLANPA----------EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAAASTYIDLLVK----ESDNNVK 297 (948)
T ss_pred HHhcCHH----------HhhHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHHHHHHHHHHHh----ccCcchh
Confidence 2211111 112456666677777766666555544444321 223334444445544443 2233466
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhcc
Q 002877 669 AITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACA 748 (872)
Q Consensus 669 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~ 748 (872)
...+.-|..+... -...+..++-.+++.|..+ +-++|..++...-++...-. +..+...+.+.+....
T Consensus 298 lIvldrl~~l~~~----~~~il~~l~mDvLrvLss~--dldvr~Ktldi~ldLvssrN------vediv~~Lkke~~kT~ 365 (948)
T KOG1058|consen 298 LIVLDRLSELKAL----HEKILQGLIMDVLRVLSSP--DLDVRSKTLDIALDLVSSRN------VEDIVQFLKKEVMKTH 365 (948)
T ss_pred hhhHHHHHHHhhh----hHHHHHHHHHHHHHHcCcc--cccHHHHHHHHHHhhhhhcc------HHHHHHHHHHHHHhcc
Confidence 6666666665422 2234556666677888888 88899988877666665321 2233333333332211
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCc
Q 002877 749 QLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGP 828 (872)
Q Consensus 749 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 828 (872)
+.+.++ ....|.-.+.++... .-.|..+..++++.+.++++| .++......+..+.+.+..++.
T Consensus 366 ~~e~d~------~~~yRqlLiktih~c--------av~Fp~~aatvV~~ll~fisD--~N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 366 NEESDD------NGKYRQLLIKTIHAC--------AVKFPEVAATVVSLLLDFISD--SNEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred cccccc------chHHHHHHHHHHHHH--------hhcChHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhCch
Confidence 111011 112344333333222 223666778888888888887 5677777788888888888775
Q ss_pred chhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhc
Q 002877 829 NTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMINRVLV 871 (872)
Q Consensus 829 ~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~ 871 (872)
+...++..++.-.-.=-+.++-..|.|.+|.-++..+
T Consensus 430 ------Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 430 ------LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred ------HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 3345666666652223456777889999998877653
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.79 E-value=2e-07 Score=91.44 Aligned_cols=200 Identities=17% Similarity=0.197 Sum_probs=131.9
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHhhcCC-C---ccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCC
Q 002877 371 PFVEANIVKSDWRCREAATYAFGSVLEGP-T---IDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPAT 446 (872)
Q Consensus 371 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~-~---~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (872)
..+.....+.+|..|..++.-+..++.+. . ...+.+.+..++..+...+.|....|...|+.+++.++..++.
T Consensus 10 ~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~--- 86 (228)
T PF12348_consen 10 AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS--- 86 (228)
T ss_dssp TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG---
T ss_pred HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH---
Confidence 33434446789999999999998887654 1 1223344556667888899999999999999999999999987
Q ss_pred CccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHH-HHHHHHhhccCCCcchhHH
Q 002877 447 GFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSI-IAELLRAADRTDVGGSKLR 524 (872)
Q Consensus 447 ~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i-l~~l~~~l~~~~~~~~~vr 524 (872)
...++.+.+++.|++.+.+ +..++.+|..++..+++.+ ++.+.+ .+.+..... +.+..+|
T Consensus 87 ----~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~-----------~~~~~~~~~~l~~~~~---~Kn~~vR 148 (228)
T PF12348_consen 87 ----HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESC-----------SYSPKILLEILSQGLK---SKNPQVR 148 (228)
T ss_dssp ----GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------------H--HHHHHHHHHHTT----S-HHHH
T ss_pred ----hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC-----------CcHHHHHHHHHHHHHh---CCCHHHH
Confidence 5778899999999999998 8889999999999999876 233445 444444444 3456778
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhch
Q 002877 525 SAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFIL 604 (872)
Q Consensus 525 ~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 604 (872)
..+..++..++...+ ... . .+.
T Consensus 149 ~~~~~~l~~~l~~~~-~~~---------------------------------------------------~------~l~ 170 (228)
T PF12348_consen 149 EECAEWLAIILEKWG-SDS---------------------------------------------------S------VLQ 170 (228)
T ss_dssp HHHHHHHHHHHTT---------------------------------------------------------G------GG-
T ss_pred HHHHHHHHHHHHHcc-chH---------------------------------------------------h------hhc
Confidence 888877777776554 100 0 122
Q ss_pred h--hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhH
Q 002877 605 Q--TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMP 649 (872)
Q Consensus 605 ~--~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~ 649 (872)
. .++.+.+.+..++.+.+++||+.|-.++..+....++.....+.
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILS 217 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchh
Confidence 1 34778889999999999999999999999998887765544443
No 78
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.79 E-value=1.8e-05 Score=84.73 Aligned_cols=335 Identities=16% Similarity=0.165 Sum_probs=207.2
Q ss_pred chhchHHHHHhhccC-CCcchHHHHHHHHHHhhcCCCccc----hhHhHHh-HHHHHHHhc-----CCC--cHHHHHHHH
Q 002877 365 VVPLVMPFVEANIVK-SDWRCREAATYAFGSVLEGPTIDK----LAPLVHA-GFDFLLNAM-----RDE--NNHVKDTTA 431 (872)
Q Consensus 365 ~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~~~~~~----~~~~l~~-l~~~l~~~l-----~d~--~~~vr~~a~ 431 (872)
+.+.++..+.....+ .+..+..+.+.++..+.+....+. ..-|.+. ++|.+++.. .+. ++.+-..+.
T Consensus 39 ~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~ 118 (415)
T PF12460_consen 39 LSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLS 118 (415)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHH
Confidence 334444444444332 244566677777777765543122 2233342 666666654 122 356666666
Q ss_pred HHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh----------cCh---HHHHHHHHHHHHHHHhhccCCCCCCCc
Q 002877 432 WTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK----------DAP---NVAEKVCGAIYYLAQGYEDAGPSSSLL 498 (872)
Q Consensus 432 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~----------d~~---~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (872)
..++.+...++. +....++..+...+. +.. ....+....+..+....+ ++..
T Consensus 119 ~l~~~iv~~l~~----------~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~-----~~~~ 183 (415)
T PF12460_consen 119 RLINLIVRSLSP----------EKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLR-----KDVS 183 (415)
T ss_pred HHHHHHHHhCCH----------HHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCC-----cccC
Confidence 666666666653 223333444433322 111 133444555666666653 4444
Q ss_pred hhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHH
Q 002877 499 SPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDL 578 (872)
Q Consensus 499 ~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 578 (872)
.|....++..++....+.+. ...|..+..++..++...+ .+ +.++.++..+...+. +..+.. .
T Consensus 184 ~~~~~~ll~~l~~~~~~~~~--~~~~~~~~~~la~LvNK~~-~~--~~l~~~l~~~~~~~~--------~~~~~~----~ 246 (415)
T PF12460_consen 184 LPDLEELLQSLLNLALSSED--EFSRLAALQLLASLVNKWP-DD--DDLDEFLDSLLQSIS--------SSEDSE----L 246 (415)
T ss_pred ccCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHcCCC-Ch--hhHHHHHHHHHhhhc--------ccCCcc----h
Confidence 45777788888887764443 4459999999999998865 22 144444444444330 111111 1
Q ss_pred HHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh--------hH-----HH
Q 002877 579 QASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG--------PE-----FA 645 (872)
Q Consensus 579 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--------~~-----~~ 645 (872)
+......+.-+.+++-- ...|....+++.++..+.+ +.+...+..+++.+..-.+ .. -.
T Consensus 247 ~~~~~~~~~Wi~KaLv~------R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQ 318 (415)
T PF12460_consen 247 RPQALEILIWITKALVM------RGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQ 318 (415)
T ss_pred hHHHHHHHHHHHHHHHH------cCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhH
Confidence 12233333333333322 2234566778888888887 5667777777777654311 11 12
Q ss_pred hhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHh
Q 002877 646 KYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD-DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALA 724 (872)
Q Consensus 646 ~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~ 724 (872)
.++..++|.+.+..+..++. .+...+.+++.+.++.+ .-+.++++.++|.+++.|..+ +.+++..++.++..+...
T Consensus 319 R~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 319 RFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHc
Confidence 46678899998888775443 78889999999999887 456789999999999999887 778999999999999988
Q ss_pred hccchhhhHHHHHHHHHH
Q 002877 725 IGVHFEKYVPHALQMMQE 742 (872)
Q Consensus 725 ~~~~~~~~l~~i~~~l~~ 742 (872)
.++.+.+|++.++|.+++
T Consensus 396 ~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 396 APELISEHLSSLIPRLLK 413 (415)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 888889999999999876
No 79
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=7.8e-07 Score=85.61 Aligned_cols=381 Identities=14% Similarity=0.173 Sum_probs=216.5
Q ss_pred hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcc
Q 002877 106 PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGM 185 (872)
Q Consensus 106 ~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l 185 (872)
-.....++...+.+.....-. --.+....++..++++ ++.+...+-..++.+.-..+.+.+ .-.+..+=+.+.+.+
T Consensus 61 lnlqrsaalafAeitek~vr~-Vsres~epvl~llqs~--d~~Iq~aa~~alGnlAVn~enk~l-iv~l~Gl~~Li~qmm 136 (550)
T KOG4224|consen 61 LNLQRSAALAFAEITEKGVRR-VSRESNEPVLALLQSC--DKCIQCAAGEALGNLAVNMENKGL-IVSLLGLDLLILQMM 136 (550)
T ss_pred cccchHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHhCc--chhhhhhhhhhhccceeccCCceE-EEeccChHHHHHHhc
Confidence 344556666777766544321 2334556666677777 777777777777776655443333 223333444556666
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHH
Q 002877 186 NLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLF 264 (872)
Q Consensus 186 ~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~ 264 (872)
.+ .-+||..+++|+.+++.+ +++ .....+.--+..+..+.++.+..++..+...+..+...+... ...+. .-+
T Consensus 137 td---~vevqcnaVgCitnLaT~-d~n-k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR-r~LV~aG~l 210 (550)
T KOG4224|consen 137 TD---GVEVQCNAVGCITNLATF-DSN-KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR-RVLVHAGGL 210 (550)
T ss_pred CC---CcEEEeeehhhhhhhhcc-ccc-hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh-hhhhccCCc
Confidence 65 568999999999998875 221 100001112334455667888889999998888876543211 00011 235
Q ss_pred HHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCc
Q 002877 265 ELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIW 344 (872)
Q Consensus 265 ~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~ 344 (872)
++++...++.+..++..+...++.++-.... .+.+-+.-|.++|.+...|
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~~----------------Rk~Laqaep~lv~~Lv~Lm-------------- 260 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRA----------------RKILAQAEPKLVPALVDLM-------------- 260 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHHH----------------HHHHHhcccchHHHHHHHH--------------
Confidence 6677777888888888887777777543221 1122222334555554444
Q ss_pred chhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCc
Q 002877 345 NISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDEN 423 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~ 423 (872)
.+++.+++--|-.+++.++.... ...+... .-+|.+++.++++.
T Consensus 261 ---------------------------------d~~s~kvkcqA~lALrnlasdt~--Yq~eiv~ag~lP~lv~Llqs~~ 305 (550)
T KOG4224|consen 261 ---------------------------------DDGSDKVKCQAGLALRNLASDTE--YQREIVEAGSLPLLVELLQSPM 305 (550)
T ss_pred ---------------------------------hCCChHHHHHHHHHHhhhcccch--hhhHHHhcCCchHHHHHHhCcc
Confidence 33444444445555555555432 1222222 55688888888877
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh--cChHHHHHHHHHHHHHHHhhccCCCCCCCchh-
Q 002877 424 NHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK--DAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSP- 500 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~- 500 (872)
-....+...|+.+++-+-.++. .... ..++..|+..+. |+..++.+|...+.+++-..+ .....
T Consensus 306 ~plilasVaCIrnisihplNe~---lI~d----agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse------~n~~~i 372 (550)
T KOG4224|consen 306 GPLILASVACIRNISIHPLNEV---LIAD----AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE------HNVSVI 372 (550)
T ss_pred hhHHHHHHHHHhhcccccCccc---ceec----ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh------hhhHHH
Confidence 7677777777776664433211 0011 124445666565 388899999999999987552 22222
Q ss_pred hHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH--HHHHHHHHHHHHHHhhhhcCcchhhhHHHH
Q 002877 501 YLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA--ELLPAIMGRLGQTLELQIVSSDDREKQGDL 578 (872)
Q Consensus 501 ~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 578 (872)
+-..-+|.+...+. | .+..++.....|+..+.-.-. ...++- .++|.++.... +...++
T Consensus 373 ~esgAi~kl~eL~l--D-~pvsvqseisac~a~Lal~d~---~k~~lld~gi~~iLIp~t~-------------s~s~Ev 433 (550)
T KOG4224|consen 373 RESGAIPKLIELLL--D-GPVSVQSEISACIAQLALNDN---DKEALLDSGIIPILIPWTG-------------SESEEV 433 (550)
T ss_pred hhcCchHHHHHHHh--c-CChhHHHHHHHHHHHHHhccc---cHHHHhhcCCcceeecccC-------------ccchhh
Confidence 22345666666665 2 345678888888887765432 222222 34444444322 233567
Q ss_pred HHHHHHHHHHHHHHc
Q 002877 579 QASLCGVLQVIIQKF 593 (872)
Q Consensus 579 ~~~~~~~l~~l~~~~ 593 (872)
+..+..++.++....
T Consensus 434 ~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 434 RGNAAAALINLSSDV 448 (550)
T ss_pred cccHHHHHHhhhhhh
Confidence 778888888876443
No 80
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=0.00056 Score=72.96 Aligned_cols=338 Identities=13% Similarity=0.185 Sum_probs=194.1
Q ss_pred HHhHHHHHHHhcC-------C-CcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHH-HHHHHHHHHhhc-ChHHHHHH
Q 002877 408 VHAGFDFLLNAMR-------D-ENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQ-RILTVLLESIKD-APNVAEKV 477 (872)
Q Consensus 408 l~~l~~~l~~~l~-------d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~d-~~~v~~~a 477 (872)
+..+++++...+. + .+++-.+.|++.++.+...+.. .......++ -+++.+++.+.+ .--.+.+|
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-----~sp~an~me~fiv~hv~P~f~s~ygfL~Sra 480 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-----MSPAANVMEYFIVNHVIPAFRSNYGFLKSRA 480 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHhhHhhcCcccchHHHH
Confidence 5566677766661 2 4567777888888888875544 112222222 345566667777 55678899
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q 002877 478 CGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGR 557 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~ 557 (872)
|..+..+-+.+. + ...+.++.+...+++++ +...|+..|.-|+..++.+. ...+.+...+|..++.
T Consensus 481 ce~is~~eeDfk------d--~~ill~aye~t~ncl~n---n~lpv~ieAalAlq~fi~~~---q~h~k~sahVp~tmek 546 (970)
T COG5656 481 CEFISTIEEDFK------D--NGILLEAYENTHNCLKN---NHLPVMIEAALALQFFIFNE---QSHEKFSAHVPETMEK 546 (970)
T ss_pred HHHHHHHHHhcc------c--chHHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHHhch---hhhHHHHhhhhHHHHH
Confidence 999999976663 1 12345566666677763 34567999999999999874 4556667777777777
Q ss_pred HHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHH--------HHccC---ChhHH
Q 002877 558 LGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLR--------VFACR---SSTVH 626 (872)
Q Consensus 558 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--------~l~~~---~~~v~ 626 (872)
+-..-+.- +- .....++..++..+++ .+.||.+++...+.+ .+.++ ...+-
T Consensus 547 LLsLSn~f-----ei-------D~LS~vMe~fVe~fse------ELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vD 608 (970)
T COG5656 547 LLSLSNTF-----EI-------DPLSMVMESFVEYFSE------ELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVD 608 (970)
T ss_pred HHHhcccc-----cc-------hHHHHHHHHHHHHhHH------hhchhHHHHHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 65542110 00 1234677788888888 788888777766665 23332 12222
Q ss_pred HHHHHHHH------HHHHHhh--hHHHhhhH-HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 002877 627 EEAMLAIG------ALAYATG--PEFAKYMP-EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLL 697 (872)
Q Consensus 627 ~~a~~~l~------~l~~~~~--~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 697 (872)
+.-+.+.| ++.-... ..+.+|+. .+.|.+.-.+.+. -.+.-..|+..+....-...+ +.|....+...+
T Consensus 609 DKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~pimwgi~Ell 686 (970)
T COG5656 609 DKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEPIMWGIFELL 686 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhhhhhHHHHHH
Confidence 22222222 2222222 23334443 4555555555543 344667777777655443332 456777777777
Q ss_pred HHHhcCCCCCCCCchhHHHHHHHHHHhhccchhh---hHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHh
Q 002877 698 LNALSNSQLNRSVKPPILSCFGDIALAIGVHFEK---YVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSG 774 (872)
Q Consensus 698 ~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 774 (872)
.+++.++.. ..--+.+..++.++...-+..|.. |..-+..+....+..+. ++. +.+..++...-.
T Consensus 687 ~~~l~~~~t-~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~----------n~l-~D~~~vc~i~e~ 754 (970)
T COG5656 687 LNLLIDEIT-AVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEE----------NFL-EDFIGVCRIIES 754 (970)
T ss_pred Hhcccccch-hhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchh----------hhH-HHHHHHHHHHHH
Confidence 777776632 244567778888888766666653 44444444444444321 111 234555666666
Q ss_pred HhhccchhhhhhhhhhHHHHHHHHH
Q 002877 775 ILQGFKSARAEVMMPYAQHLLQFIE 799 (872)
Q Consensus 775 ~~~~l~~~~~~~~~~~~~~il~~l~ 799 (872)
++..++.. ....|++-..+...
T Consensus 755 l~Ln~rd~---Ll~qy~plfi~vag 776 (970)
T COG5656 755 LILNIRDE---LLSQYLPLFISVAG 776 (970)
T ss_pred HHHHccch---hHHhhhHHHHHHHh
Confidence 66666543 23335554444444
No 81
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.8e-05 Score=79.44 Aligned_cols=257 Identities=15% Similarity=0.093 Sum_probs=145.8
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRIL 460 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 460 (872)
....-+.+.++..|..... ..+..--....+.++.... +++..||.+|.++++-+.-+-.. .....+...-.
T Consensus 363 ~Tl~~s~Cdals~i~~~~f-~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l------r~d~~fv~~aa 435 (728)
T KOG4535|consen 363 PTLQASACDALSSILPEAF-SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL------RQDVIFVADAA 435 (728)
T ss_pred CCchhHHHHHHhhcCchhh-cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch------hhhHHHHHHHH
Confidence 4445566777777654332 2221111123334444444 45566888888887766543332 12233455666
Q ss_pred HHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcC
Q 002877 461 TVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLS-PYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCS 538 (872)
Q Consensus 461 ~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~ 538 (872)
..++..+.| .-.+|..++|+++++.+......++++... .+....+..+....+..+..+.+|+..++++++.+....
T Consensus 436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 777777887 778999999999999988753333233322 344555556665555445556778999999999887654
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHH
Q 002877 539 NITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF 618 (872)
Q Consensus 539 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 618 (872)
. .-...-+.+++..-+..+... ..-.....++=++|.+++++++.-.-. - .-.++.+++++.|+.++
T Consensus 516 q-~i~~~~~~e~~~~~~~~l~~~--------v~~~~~~kV~WNaCya~gNLfkn~a~~---l-q~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 516 Q-PIEKPTFAEIIEESIQALIST--------VLTEAAMKVRWNACYAMGNLFKNPALP---L-QTAPWASQAFNALTSLV 582 (728)
T ss_pred H-HhhhccHHHHHHHHHHhcccc--------eecccccccchHHHHHHHHhhcCcccc---c-cCCCchHHHHHHHHHHH
Confidence 4 111112222222222221111 001223346678899999997542210 0 22357789999999988
Q ss_pred ccC-ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhc
Q 002877 619 ACR-SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQ 660 (872)
Q Consensus 619 ~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 660 (872)
.+. +..+|-.|..++...... +++...++-.+..+...|.
T Consensus 583 ~~~~NFKVRi~AA~aL~vp~~r--e~~~d~~~Lsw~~lv~aLi 623 (728)
T KOG4535|consen 583 TSCKNFKVRIRAAAALSVPGKR--EQYGDQYALSWNALVTALQ 623 (728)
T ss_pred HHhccceEeehhhhhhcCCCCc--ccchhHHhHHHHHHHHHHH
Confidence 665 788888888777665432 2344444444444444443
No 82
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.68 E-value=0.002 Score=74.55 Aligned_cols=404 Identities=11% Similarity=0.085 Sum_probs=209.6
Q ss_pred HHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchh
Q 002877 93 VKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQD 172 (872)
Q Consensus 93 i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~ 172 (872)
..+.++..+.++...+|..|-.|++.|+..+-.--.-+++-..+...+.++ ...+|++|+..+|+.+-.. ..
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Ds--sasVREAaldLvGrfvl~~------~e 888 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDS--SASVREAALDLVGRFVLSI------PE 888 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccc--hhHHHHHHHHHHhhhhhcc------HH
Confidence 344667778888899999999999999988722235688888888888888 8889999999999877765 45
Q ss_pred hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhh
Q 002877 173 EVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTY 252 (872)
Q Consensus 173 ~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (872)
...+++..+...+.| ++..||+.+++.+..+..-.++ |.. ...+.--+....+|++..+++-+++.|..+=-..
T Consensus 889 ~~~qyY~~i~erIlD--tgvsVRKRvIKIlrdic~e~pd-f~~---i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 889 LIFQYYDQIIERILD--TGVSVRKRVIKILRDICEETPD-FSK---IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHHHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHhCCC-hhh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 567778888888888 7889999999999997653222 221 1222222333345555558888888877653211
Q ss_pred -hhh--hHHhHH------HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhH
Q 002877 253 -YEV--LEPYMQ------TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLV 323 (872)
Q Consensus 253 -~~~--~~~~l~------~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 323 (872)
+.. ...+.. .++......+.+..+..-...+.+-...... . + ...+....+...+
T Consensus 963 ~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~-~----------~-----~~~v~~~~v~~~~ 1026 (1692)
T KOG1020|consen 963 VPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMK-E----------S-----VKPVALAKVTHVL 1026 (1692)
T ss_pred CCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhh-h----------h-----hhHHHHhhcchHH
Confidence 110 011111 1222222222222222221111111110000 0 0 0012222222333
Q ss_pred HHHHHHHh----cccCCcccCCCCcchh-hhHHHHHHHHHhhcCCcchh----chHHHHHhhccC-CCcchHHHHHHHHH
Q 002877 324 PMLLETLL----KQEEDQDQDDSIWNIS-MAGGTCLGLVARTVGDEVVP----LVMPFVEANIVK-SDWRCREAATYAFG 393 (872)
Q Consensus 324 ~~l~~~l~----~~~~d~~~d~~~~~~r-~~a~~~l~~l~~~~~~~~~~----~l~~~l~~~l~~-~~~~~r~aal~~l~ 393 (872)
..+..++. ..+.+++.++ ...+| .+....|..++...|..+.+ .+.|++.....+ .+.+.-+..+..+.
T Consensus 1027 ~L~~~cl~~~i~ev~~~~~~~~-~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile 1105 (1692)
T KOG1020|consen 1027 NLLTHCLVEKISEVESDDMNEE-ESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILE 1105 (1692)
T ss_pred HHHHHHHHHHHHhhhhHhhhcc-cchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHH
Confidence 33333332 2221121111 12333 44556677777776655543 334554433211 12233333333444
Q ss_pred HhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh-----
Q 002877 394 SVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK----- 468 (872)
Q Consensus 394 ~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~----- 468 (872)
.+..-.. ..-..++..+=..|+..+--.+......|.-|++.++..... ....+...+..+++.+.
T Consensus 1106 ~VlPlv~-~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~--------~~~~v~~cf~~~~k~le~~k~s 1176 (1692)
T KOG1020|consen 1106 CVLPLVA-NPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTD--------GAKVVKACFSCYLKLLEVIKSS 1176 (1692)
T ss_pred HHhhhhc-cchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhcc--------chHHHHHHHHHHHHHHHHHHhc
Confidence 4332221 211223333334444444334445555666777777765432 22334444444444432
Q ss_pred --cC-----hHHHHHHHHHHHHHHHhhccCCCC--CCC----chhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 002877 469 --DA-----PNVAEKVCGAIYYLAQGYEDAGPS--SSL----LSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVV 535 (872)
Q Consensus 469 --d~-----~~v~~~a~~al~~l~~~~~~~~~~--~~~----l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~ 535 (872)
++ ...-.+...+++-+++.+.-..++ +.. .....+.++..+..... . ....+|..|+.+++.+.
T Consensus 1177 ~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k-~--~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1177 NNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSK-D--KDGELRRKALINLGFIC 1253 (1692)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHH-h--hhhHHHHHHHHHHHHHH
Confidence 11 234467778888888865411110 111 11233344444433333 2 23667999999999998
Q ss_pred hcCC
Q 002877 536 RCSN 539 (872)
Q Consensus 536 ~~~~ 539 (872)
-..+
T Consensus 1254 i~hp 1257 (1692)
T KOG1020|consen 1254 IQHP 1257 (1692)
T ss_pred hhCc
Confidence 7776
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.62 E-value=1.5e-06 Score=85.16 Aligned_cols=198 Identities=14% Similarity=0.203 Sum_probs=130.2
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
++.+.+-+.-.+.++..|..++..+.++........+ .......+..++..+...+.| +..|...||.++..++..+
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~--~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDF--PPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCcccc--HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444445788999999999999998876621000 011122334445677778888 8899999999999999998
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcC
Q 002877 489 EDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVS 568 (872)
Q Consensus 489 ~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 568 (872)
+..+.++...++|.|+..+.. ....++..+..++..++..++
T Consensus 85 ------~~~~~~~~~~~l~~Ll~~~~~---~~~~i~~~a~~~L~~i~~~~~----------------------------- 126 (228)
T PF12348_consen 85 ------GSHFEPYADILLPPLLKKLGD---SKKFIREAANNALDAIIESCS----------------------------- 126 (228)
T ss_dssp ------GGGGHHHHHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS------------------------------
T ss_pred ------hHhHHHHHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHHHHHCC-----------------------------
Confidence 677999999999999999973 234567777777777776544
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHH-HHHHHHHHccCChhHHHHHHHHHHHHHHHhh---hHH
Q 002877 569 SDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQI-MVLFLRVFACRSSTVHEEAMLAIGALAYATG---PEF 644 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~---~~~ 644 (872)
+.+.+ ...+.....+.++.+|..++.++..+....+ ..+
T Consensus 127 -------------------------------------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 127 -------------------------------------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp -------------------------------------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred -------------------------------------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 11223 4555556677788999999999998888777 334
Q ss_pred Hh--hhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCC
Q 002877 645 AK--YMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDK 685 (872)
Q Consensus 645 ~~--~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 685 (872)
.. .++.+.+.+...+.+. +++||..|-.++..+.+..|+.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HH
T ss_pred cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHh
Confidence 33 4588999999999876 5779999999999998887743
No 84
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=3.8e-05 Score=82.54 Aligned_cols=406 Identities=14% Similarity=0.144 Sum_probs=236.8
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN 301 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 301 (872)
+++-+..+.+-.+-+.++.+..-+...+...|+.- ...++.++....++++.+|..|+.....+--.
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--------- 116 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--------- 116 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh---------
Confidence 55556666666677777776666655554443321 12456677788889999999998766554321
Q ss_pred CCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchh-chHHHHHhhccCC
Q 002877 302 PETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVP-LVMPFVEANIVKS 380 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~l~~~ 380 (872)
.+.+ .+...+...+.+ + .--+|+.++.+...+...-++...+ .+.+.+...+.|+
T Consensus 117 -----------~i~e----y~~~Pl~~~l~d--~-------~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 117 -----------KITE----YLCDPLLKCLKD--D-------DPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred -----------HHHH----HHHHHHHHhccC--C-------ChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC
Confidence 1222 233333333321 1 1457888888888777665555443 4678888888899
Q ss_pred CcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHH
Q 002877 381 DWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRIL 460 (872)
Q Consensus 381 ~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 460 (872)
++.+-..|+.++..|.+............+++..++..+..-+.+-+ +..+..++.+.+. . ..-...++
T Consensus 173 ~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~-------d-~~ea~~i~ 241 (734)
T KOG1061|consen 173 NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPK-------D-SREAEDIC 241 (734)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCC-------C-chhHHHHH
Confidence 99999999999999987653112222233555666666654444333 4445555555554 1 23566788
Q ss_pred HHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 461 TVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 461 ~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
+.+...+.. ++.|...+...+..+.+.. .+.-..++..+-+.++..+.. +. .+...++.-+..++...+
T Consensus 242 ~r~~p~Lqh~n~avvlsavKv~l~~~~~~------~~~~~~~~~K~~~pl~tlls~---~~-e~qyvaLrNi~lil~~~p 311 (734)
T KOG1061|consen 242 ERLTPRLQHANSAVVLSAVKVILQLVKYL------KQVNELLFKKVAPPLVTLLSS---ES-EIQYVALRNINLILQKRP 311 (734)
T ss_pred HHhhhhhccCCcceEeehHHHHHHHHHHH------HHHHHHHHHHhcccceeeecc---cc-hhhHHHHhhHHHHHHhCh
Confidence 888888887 8888888888888887765 332223444444455444432 22 447778888888887776
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHc
Q 002877 540 ITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFA 619 (872)
Q Consensus 540 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 619 (872)
. ++..-+..++-.. .|+.- ++..=+.++..++ ...-+++++.-+..--.
T Consensus 312 -~----~~~~~~~~Ff~ky-----------nDPiY---vK~eKleil~~la------------~~~nl~qvl~El~eYat 360 (734)
T KOG1061|consen 312 -E----ILKVEIKVFFCKY-----------NDPIY---VKLEKLEILIELA------------NDANLAQVLAELKEYAT 360 (734)
T ss_pred -H----HHHhHhHeeeeec-----------CCchh---hHHHHHHHHHHHh------------hHhHHHHHHHHHHHhhh
Confidence 2 1111111111000 11100 0000012222221 11123345555555555
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 002877 620 CRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLN 699 (872)
Q Consensus 620 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 699 (872)
.-+......++.++|.++....+. +.+++.++..++...+. +...++..+.++.+.++..+ +.+++.+..
T Consensus 361 evD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~~----~~vv~~l~~ 430 (734)
T KOG1061|consen 361 EVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDY-VVQEAIVVIRDILRKYPNKY----ESVVAILCE 430 (734)
T ss_pred hhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCch----hhhhhhhcc
Confidence 557777788899999987755443 55666666666544333 66777888888888776432 445555555
Q ss_pred HhcCCCCCCCCchhHHHHHHHHHHhhcc
Q 002877 700 ALSNSQLNRSVKPPILSCFGDIALAIGV 727 (872)
Q Consensus 700 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~ 727 (872)
.+.+=+ +++.|.+.++.+|+-+..+++
T Consensus 431 ~~~sl~-epeak~amiWilg~y~~~i~~ 457 (734)
T KOG1061|consen 431 NLDSLQ-EPEAKAALIWILGEYAERIEN 457 (734)
T ss_pred cccccC-ChHHHHHHHHHHhhhhhccCc
Confidence 444332 667888888899986665543
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.51 E-value=1.5e-05 Score=89.05 Aligned_cols=281 Identities=14% Similarity=0.136 Sum_probs=186.2
Q ss_pred hHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccC---ccccchhhHHHHHHHHHh
Q 002877 107 EARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEIS---HQDLVQDEVNAVLTAVVQ 183 (872)
Q Consensus 107 ~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~~l~~~~~~~l~~~l~~ 183 (872)
..|..+-..+..++.+.-.+....-++|.++.++.++ ...+|-.|+.+|..+...+. +.-- .-+.+.++|.+..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds--~a~Vra~Al~Tlt~~L~~Vr~~~~~da-niF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDS--EADVRATALETLTELLALVRDIPPSDA-NIFPEYLFPHLNH 514 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCc--hHHHHHHHHHHHHHHHhhccCCCcccc-hhhHhhhhhhhHh
Confidence 3455666666666655433346778999999999999 89999999999998877653 1111 2356778999998
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---h--hcCCcHHHHHHHHHHHHHHHHh-hhhhhH
Q 002877 184 GMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCE---T--AKSKEVEIRQAAFECLVSIAST-YYEVLE 257 (872)
Q Consensus 184 ~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~--~~~~~~~~~~~~~~~l~~l~~~-~~~~~~ 257 (872)
.+.|+ ....||.+-..+|..++...-. ++...++ . .++++.+ ...+. +.....
T Consensus 515 l~~d~-~~~~vRiayAsnla~LA~tA~r----------Fle~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~ 573 (1431)
T KOG1240|consen 515 LLNDS-SAQIVRIAYASNLAQLAKTAYR----------FLELTQELRQAGMLNDPNSE----------TAPEQNYNTELQ 573 (1431)
T ss_pred hhccC-ccceehhhHHhhHHHHHHHHHH----------HHHHHHHHHhcccccCcccc----------cccccccchHHH
Confidence 88884 3457888888888876542211 1111111 1 2233332 11111 111111
Q ss_pred HhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH-HhhHHHHHHHHhcccCC
Q 002877 258 PYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKAR-SSLVPMLLETLLKQEED 336 (872)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d 336 (872)
.....+-+.+...+.++.+.++..-++-+..+|..-. +.-- .-|++.+...|.+.
T Consensus 574 ~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---------------------k~ksND~iLshLiTfLNDk--- 629 (1431)
T KOG1240|consen 574 ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---------------------KEKSNDVILSHLITFLNDK--- 629 (1431)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---------------------hcccccchHHHHHHHhcCc---
Confidence 1111222233445567777888888888777776521 1100 13566666665422
Q ss_pred cccCCCCcchhhhHHHHHHHHHhhcCCc-chhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHH
Q 002877 337 QDQDDSIWNISMAGGTCLGLVARTVGDE-VVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFL 415 (872)
Q Consensus 337 ~~~d~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l 415 (872)
| |.+|.+-.+.+.-++-..|.. +-+.++|.+.+.+.|++..+-..|+.++..+++.. ..-++++.+++..+
T Consensus 630 ----D--w~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v 701 (1431)
T KOG1240|consen 630 ----D--WRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDV 701 (1431)
T ss_pred ----c--HHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhh
Confidence 1 999988777777777777855 67788999999999998888888888888888643 23355677888888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 416 LNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 416 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
...|-+||..+|++++..|..++..+..
T Consensus 702 ~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 702 LPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred hhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 8899999999999999999988877765
No 86
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00054 Score=73.16 Aligned_cols=416 Identities=13% Similarity=0.169 Sum_probs=210.8
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh--hhHHh
Q 002877 182 VQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYE--VLEPY 259 (872)
Q Consensus 182 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~ 259 (872)
.+.+.. .+.+++..++|-+...+-. . +.....++.++.-.+-+.+-++++- +..+.+++..... .+...
T Consensus 26 k~~Lek--~~~~~KIeamK~ii~~mln--G----e~~p~Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~~E 96 (948)
T KOG1058|consen 26 KEKLEK--GDDEVKIEAMKKIIALMLN--G----EDLPSLLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLLHE 96 (948)
T ss_pred HHHHhc--CChHHHHHHHHHHHHHHHc--C----CCchHHHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccHHH
Confidence 344554 5678888888877654321 1 1111234444444455555555544 4444455443321 12222
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCccc
Q 002877 260 MQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQ 339 (872)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 339 (872)
+--+.+..-..++++++-+|-..+.|++.+-+. ..+++++|.+..++....
T Consensus 97 MILvcna~RkDLQHPNEyiRG~TLRFLckLkE~------------------------ELlepl~p~IracleHrh----- 147 (948)
T KOG1058|consen 97 MILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEP------------------------ELLEPLMPSIRACLEHRH----- 147 (948)
T ss_pred HHHHHHHHhhhccCchHhhcchhhhhhhhcCcH------------------------HHhhhhHHHHHHHHhCcc-----
Confidence 333445556677889999999999999877653 233457777777775543
Q ss_pred CCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhcc-CCCcchHHHHHHHHH---------HhhcCCC-ccchhHhH
Q 002877 340 DDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIV-KSDWRCREAATYAFG---------SVLEGPT-IDKLAPLV 408 (872)
Q Consensus 340 d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~---------~i~~~~~-~~~~~~~l 408 (872)
.-||+-|.-++..+.+. ++.++|..-..+...+. ..++.-+..|...|- .+..... -..+.+.+
T Consensus 148 ----sYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~L 222 (948)
T KOG1058|consen 148 ----SYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSL 222 (948)
T ss_pred ----hhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHH
Confidence 46888888888888766 35566655555555543 234443333322222 1221110 01111222
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHH--HhhcChHHHHHHHHHHHHHHH
Q 002877 409 HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLE--SIKDAPNVAEKVCGAIYYLAQ 486 (872)
Q Consensus 409 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~l~d~~~v~~~a~~al~~l~~ 486 (872)
..++--++......+|..+..-..++-.+.....+ . .++++-.. .+..+|..-.+|..++..++.
T Consensus 223 qlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stss-a------------V~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~ 289 (948)
T KOG1058|consen 223 QLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSS-A------------VIFEAAGTLVTLSNDPTALKAAASTYIDLLV 289 (948)
T ss_pred HHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCc-h------------hhhhhcceEEEccCCHHHHHHHHHHHHHHHH
Confidence 21111111111224455555555555444432221 0 00000000 011133333333333333332
Q ss_pred hhccCCC---C-------CCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q 002877 487 GYEDAGP---S-------SSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMG 556 (872)
Q Consensus 487 ~~~~~~~---~-------~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~ 556 (872)
....... . ...-...++.++-.++..+..+| ..+|..+++..-.++.+.. ++++...+-.
T Consensus 290 kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~d---ldvr~Ktldi~ldLvssrN-------vediv~~Lkk 359 (948)
T KOG1058|consen 290 KESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPD---LDVRSKTLDIALDLVSSRN-------VEDIVQFLKK 359 (948)
T ss_pred hccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCccc---ccHHHHHHHHHHhhhhhcc-------HHHHHHHHHH
Confidence 2110000 0 00001223444444555565444 6778888888877777654 3333334433
Q ss_pred HHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHH
Q 002877 557 RLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGAL 636 (872)
Q Consensus 557 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l 636 (872)
.+.++.+ .+.+.....|.....++++++-.+++ +...+++.++..+.+.++......+..+...
T Consensus 360 e~~kT~~------~e~d~~~~yRqlLiktih~cav~Fp~----------~aatvV~~ll~fisD~N~~aas~vl~FvrE~ 423 (948)
T KOG1058|consen 360 EVMKTHN------EESDDNGKYRQLLIKTIHACAVKFPE----------VAATVVSLLLDFISDSNEAAASDVLMFVREA 423 (948)
T ss_pred HHHhccc------cccccchHHHHHHHHHHHHHhhcChH----------HHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3333211 12233445677788888888755555 7788999999999998887777777777776
Q ss_pred HHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 637 AYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 637 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
.+.++.--.. ++..+...+..-....+...|+|.+|..+....
T Consensus 424 iek~p~Lr~~----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 424 IEKFPNLRAS----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHhCchHHHH----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 6655543222 333333333222233467778888887765543
No 87
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.003 Score=67.13 Aligned_cols=433 Identities=14% Similarity=0.118 Sum_probs=243.1
Q ss_pred hhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcc
Q 002877 375 ANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPE 454 (872)
Q Consensus 375 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (872)
+.++++.+..+.-+.+.++.+.+.. ...++.++..+..-|...++....-|+.+++.+++.--.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n-----~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~----------- 144 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNEN-----SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMA----------- 144 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcc-----hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHH-----------
Confidence 3445666777888888888887654 235667778888888888999999999999988754322
Q ss_pred cHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCchh--hHHHHHHHHHHhhccCCCcchhHHHHHHH
Q 002877 455 NLQRILTVLLESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLLSP--YLTSIIAELLRAADRTDVGGSKLRSAAYE 529 (872)
Q Consensus 455 ~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~--~~~~il~~l~~~l~~~~~~~~~vr~~a~~ 529 (872)
..+-+.+-+.|-+ ..-|+..|+-+|-.+.+.. ++.+.+ +.+.| +..++ +.+..|-.++..
T Consensus 145 --ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s------pDl~~~~~W~~ri----v~LL~---D~~~gv~ta~~s 209 (938)
T KOG1077|consen 145 --EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS------PDLVNPGEWAQRI----VHLLD---DQHMGVVTAATS 209 (938)
T ss_pred --HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC------ccccChhhHHHHH----HHHhC---ccccceeeehHH
Confidence 2222223343332 6778999999999998886 666554 44444 34444 233555566666
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcch-----------------------hhhHHHHHHHHHHHH
Q 002877 530 TLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDD-----------------------REKQGDLQASLCGVL 586 (872)
Q Consensus 530 al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l 586 (872)
.+..+++..+ +.+..-+|.-+.++.......-.+-.| .......+....+++
T Consensus 210 Li~~lvk~~p-----~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl 284 (938)
T KOG1077|consen 210 LIEALVKKNP-----ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVL 284 (938)
T ss_pred HHHHHHHcCC-----HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 7777776666 333333444444444332111111000 011112333444555
Q ss_pred HHHHHHcCCCccchh----------------------hchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh--h
Q 002877 587 QVIIQKFSSTDATKS----------------------FILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG--P 642 (872)
Q Consensus 587 ~~l~~~~~~~~~~~~----------------------~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~ 642 (872)
..+.+...+-..+++ .-...+...++.|.+.+.+....+|--++..+..++..-. +
T Consensus 285 ~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~d 364 (938)
T KOG1077|consen 285 ERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSID 364 (938)
T ss_pred HHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHH
Confidence 555544432110000 0111234566677777777777888877777777765422 2
Q ss_pred HHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHH
Q 002877 643 EFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIA 722 (872)
Q Consensus 643 ~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~ 722 (872)
.+..+.+.++ ..|+.+.+-.+|..|+.+|-.++.... ...|+..+++.|... +..+|+....-.+-++
T Consensus 365 avK~h~d~Ii----~sLkterDvSirrravDLLY~mcD~~N------ak~IV~elLqYL~tA--d~sireeivlKvAILa 432 (938)
T KOG1077|consen 365 AVKKHQDTII----NSLKTERDVSIRRRAVDLLYAMCDVSN------AKQIVAELLQYLETA--DYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHHHHH----HHhccccchHHHHHHHHHHHHHhchhh------HHHHHHHHHHHHhhc--chHHHHHHHHHHHHHH
Confidence 3444444444 444545566799999999988876543 567888888888776 8899999888888888
Q ss_pred HhhccchhhhHHHHHHHHHHHHHhcccc--------CCCchHHHHHH----------HHHHHHHHHHHHhHhhccchhhh
Q 002877 723 LAIGVHFEKYVPHALQMMQEAAKACAQL--------DMEDEELIDYG----------NQLRSSIFEAYSGILQGFKSARA 784 (872)
Q Consensus 723 ~~~~~~~~~~l~~i~~~l~~~~~~~~~~--------~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~ 784 (872)
..+..+..=|.+.+++.+--+-.-..|. --+.+|...|. ....|.++.+-..+++..+....
T Consensus 433 EKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa 512 (938)
T KOG1077|consen 433 EKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIA 512 (938)
T ss_pred HHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhc
Confidence 8887777778887777665432111000 00122322221 11122222222223222222110
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 002877 785 EVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQG 864 (872)
Q Consensus 785 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~ 864 (872)
..=..-....+..+..-+.. .....|-..+...-.++...++- .+-|+.+.+.-....|.++++.|.-=+.
T Consensus 513 ~~prss~~~qFsllh~K~~~--~s~~tr~lLLtTyiKl~nl~PEi-------~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 513 DDPRSSPAVQFSLLHEKLHL--CSPVTRALLLTTYIKLINLFPEI-------KSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred CCCCCChHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHhhChhh-------hHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 00000011223333222211 34566666777777787777542 2345555555567799999999885443
No 88
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.00048 Score=74.56 Aligned_cols=382 Identities=11% Similarity=0.081 Sum_probs=206.8
Q ss_pred cccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH-HHHHHHHHHhhccCCCcchhHHHHHHH
Q 002877 453 PENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL-TSIIAELLRAADRTDVGGSKLRSAAYE 529 (872)
Q Consensus 453 ~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~ 529 (872)
..-++.++|.|+..+++ |..+...||.|+.++|+.+ |....-.+ ...+|.++..+...+ -..|-+.+++
T Consensus 206 ~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl------P~S~a~vV~~~aIPvl~~kL~~Ie--yiDvAEQ~Lq 277 (1051)
T KOG0168|consen 206 GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL------PRSSAIVVDEHAIPVLLEKLLTIE--YIDVAEQSLQ 277 (1051)
T ss_pred cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc------cchhheeecccchHHHHHhhhhhh--hhHHHHHHHH
Confidence 34568899999999987 8999999999999999998 44433222 245666666665333 4567888999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHH
Q 002877 530 TLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQ 609 (872)
Q Consensus 530 al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 609 (872)
|+..+.+..+ ..+..- ..++ ..+..+.= -....+..++.+..++++.+.. .-..|+-+
T Consensus 278 ALE~iSR~H~-~AiL~A-G~l~-a~LsylDF-------------FSi~aQR~AlaiaaN~Cksi~s------d~f~~v~e 335 (1051)
T KOG0168|consen 278 ALEKISRRHP-KAILQA-GALS-AVLSYLDF-------------FSIHAQRVALAIAANCCKSIRS------DEFHFVME 335 (1051)
T ss_pred HHHHHHhhcc-HHHHhc-ccHH-HHHHHHHH-------------HHHHHHHHHHHHHHHHHhcCCC------ccchHHHH
Confidence 9999888777 221110 0111 11111110 0112456778888999999988 34456678
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh---HHHh-hhHHHHHHHHhhhcccch---HhHHHHHHHHHHHHHHHh
Q 002877 610 IMVLFLRVFACRSSTVHEEAMLAIGALAYATGP---EFAK-YMPEFYQYLQMGLQNSEE---YQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 610 l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~---~~~~-~l~~i~~~l~~~l~~~~~---~~v~~~a~~~l~~l~~~~ 682 (872)
.++.|..++...+...-+.+..++.+++..+.. .+.. +-..++..+.+.+.-... ..+....+..+..++...
T Consensus 336 alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~ 415 (1051)
T KOG0168|consen 336 ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGS 415 (1051)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCC
Confidence 889999999988888889999999999876542 2221 112344444443332211 113344444444444433
Q ss_pred cCCccc-cHHHHHHHHHHHhcCCCC--CCCC-----c--hhHHHHHHHHHHhhcc-----chhhhHHHHHHHHHHHHH--
Q 002877 683 DDKVLP-FCDGIMSLLLNALSNSQL--NRSV-----K--PPILSCFGDIALAIGV-----HFEKYVPHALQMMQEAAK-- 745 (872)
Q Consensus 683 ~~~~~~-~~~~i~~~l~~~l~~~~~--~~~~-----~--~~~~~~l~~l~~~~~~-----~~~~~l~~i~~~l~~~~~-- 745 (872)
+..+.. +..+|...+..+|..... +... | ...+.....++..++. -|..+...+.+.+..+-+
T Consensus 416 pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~ 495 (1051)
T KOG0168|consen 416 PLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELL 495 (1051)
T ss_pred hHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhccccccccccc
Confidence 322222 234566666666654321 1111 1 1222222222222211 011111111111111000
Q ss_pred --hccccCCCchHHHHHHH-HHH--H----------HHHHHHH-hHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCH
Q 002877 746 --ACAQLDMEDEELIDYGN-QLR--S----------SIFEAYS-GILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDE 809 (872)
Q Consensus 746 --~~~~~~~~d~~~~~~~~-~~~--~----------~~~~~~~-~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 809 (872)
...|... -..|.. ..| + ..-+-+. ..=.++-.+.++.+..|...+++.|.++++.. -+.
T Consensus 496 ~~~~d~~~s----~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSs-A~~ 570 (1051)
T KOG0168|consen 496 WQWRDDRGS----WHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSS-ANP 570 (1051)
T ss_pred ccCcccccc----ccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhcc-CCc
Confidence 0000000 000000 000 0 0000000 00001111256678889999999999987654 589
Q ss_pred hHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 002877 810 NVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMINRV 869 (872)
Q Consensus 810 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 869 (872)
.||--++.+|..++-......+.+.+-..-+...+...+.+.|..+.--|-...+.+++-
T Consensus 571 ~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeK 630 (1051)
T KOG0168|consen 571 DVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEK 630 (1051)
T ss_pred hhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHH
Confidence 999999999999887777665555554445666666667777777765555555555554
No 89
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.44 E-value=0.007 Score=68.91 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHh-HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCC
Q 002877 626 HEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQ-VCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 626 ~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 704 (872)
|+.|-.++..++..+|..+...++.+..+|+..++...+.. .-...+..+..+....+..+.+ +.+.++.++.+..+.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~ 828 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI 828 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc
Confidence 56677788888888998888888888888888887643222 3333444444555555666667 667778888888777
Q ss_pred CCCCCCchhHHHHHHHHHHhh-ccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhh
Q 002877 705 QLNRSVKPPILSCFGDIALAI-GVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSAR 783 (872)
Q Consensus 705 ~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 783 (872)
+..+|..++.|++.+.... ++.+...++.++|.+-.. .. ..-|..+...+..+...+..
T Consensus 829 --~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~-~~---------------~~~r~~a~e~~~~l~~~l~~-- 888 (1549)
T KOG0392|consen 829 --HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL-DK---------------FVRRQGADELIELLDAVLMV-- 888 (1549)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-hh---------------HhhhhhHHHHHHHHHHhhcc--
Confidence 8899999999999998764 444445555555544332 10 11233333334344444433
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcc
Q 002877 784 AEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPN 829 (872)
Q Consensus 784 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 829 (872)
.+.||..-++..+....++ ..+.+|.++-.++..++...+-.
T Consensus 889 --~l~~~~~Llv~pllr~msd--~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 889 --GLVPYNPLLVVPLLRRMSD--QIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred --cccccceeehhhhhccccc--chHHHHHHHHHHHHHHhcccccc
Confidence 3778888888888776665 67899999999999988877743
No 90
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.41 E-value=1.1e-06 Score=79.63 Aligned_cols=130 Identities=26% Similarity=0.410 Sum_probs=97.0
Q ss_pred hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCc---c------------ccc
Q 002877 106 PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISH---Q------------DLV 170 (872)
Q Consensus 106 ~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~---~------------~l~ 170 (872)
+.||+++|.+++.|+.+++|. .||++++.+++.++++ +.....++.+|..+.+++.. . .+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~~---~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l- 76 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQSS---PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL- 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH-
Confidence 568999999999999999995 9999999999998874 77788899999988888631 0 11
Q ss_pred hhhHHHHHHHHHhcccCCCCC--HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Q 002877 171 QDEVNAVLTAVVQGMNLAEHS--AEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECL 245 (872)
Q Consensus 171 ~~~~~~l~~~l~~~l~~~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l 245 (872)
....+.+++.+.+.+...... .++...+++|+.+++.+++.+.-.. ..+++.+++.++ +++.+..|++||
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~---~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN---SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS---SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc---HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 334566777777777663211 7899999999999987655432211 127788888885 444588888875
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=5.4e-05 Score=79.24 Aligned_cols=308 Identities=14% Similarity=0.135 Sum_probs=184.0
Q ss_pred HHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccC
Q 002877 373 VEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVIS 452 (872)
Q Consensus 373 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 452 (872)
+..+..+.++++|..|+.++-++.++.. .-+.++....+.++|.+..||.+|.+++.-++...+.+.-. ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~-e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFK------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER-ESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccc------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc-hhhh
Confidence 3344567789999999999999988653 22366788899999999999999999888888777431100 0123
Q ss_pred cccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHH-HHHHhhccCCCcchhHHHHHHHH
Q 002877 453 PENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIA-ELLRAADRTDVGGSKLRSAAYET 530 (872)
Q Consensus 453 ~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~-~l~~~l~~~~~~~~~vr~~a~~a 530 (872)
.......+..+...+.| ...||..|..+|+.+-... ..++.+.+. .++..+.+ +..+-+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS----------ee~i~QTLdKKlms~lRR--------kr~ahkr 337 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS----------EEIIQQTLDKKLMSRLRR--------KRTAHKR 337 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH----------HHHHHHHHHHHHhhhhhh--------hhhcccc
Confidence 34566777888888889 8999999999998876553 122222221 11111110 0011111
Q ss_pred HHHHHhcC----C---Cccc-HHH----HHHHHHHH-HHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCc
Q 002877 531 LNEVVRCS----N---ITET-SQI----IAELLPAI-MGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTD 597 (872)
Q Consensus 531 l~~l~~~~----~---~~~~-~~~----~~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 597 (872)
=..+...- | ..+. .+. -..++|.- +. .+--.-.+++.++|..+...+..++..-+.
T Consensus 338 pk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACG---------A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-- 406 (823)
T KOG2259|consen 338 PKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACG---------ALVHGLEDEFYEVRRAAVASLCSLATSSPG-- 406 (823)
T ss_pred hHHHHhcCCcccCccccccCchhhccccccccccccccc---------eeeeechHHHHHHHHHHHHHHHHHHcCCCC--
Confidence 11111111 0 0000 000 00000000 00 000011256788999999998888755555
Q ss_pred cchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHH
Q 002877 598 ATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGD 677 (872)
Q Consensus 598 ~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 677 (872)
|....+..|+.++++....||..|+.++..++.... .-+..++.+...|.+. +.++|.+.-..|+.
T Consensus 407 --------FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~-s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 407 --------FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDR-SVDVREALRELLKN 472 (823)
T ss_pred --------cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhc-CHHHHHHHHHHHHh
Confidence 677899999999999999999999999999887632 1123445555555553 45688777666654
Q ss_pred HHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHH
Q 002877 678 VCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHAL 737 (872)
Q Consensus 678 l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~ 737 (872)
. .-.-..-+.-.+..+++.|.. -+.=|..++.|+++|++..+..+...+..++
T Consensus 473 ~----~~~d~~~i~m~v~~lL~~L~k---yPqDrd~i~~cm~~iGqnH~~lv~s~m~rfl 525 (823)
T KOG2259|consen 473 A----RVSDLECIDMCVAHLLKNLGK---YPQDRDEILRCMGRIGQNHRRLVLSNMGRFL 525 (823)
T ss_pred c----CCCcHHHHHHHHHHHHHHhhh---CCCCcHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 3 111112234445556666653 3445789999999999988865544444333
No 92
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.0023 Score=67.60 Aligned_cols=263 Identities=16% Similarity=0.192 Sum_probs=163.4
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhh
Q 002877 220 NYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEF 299 (872)
Q Consensus 220 ~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~ 299 (872)
.....-+.....+.+..+|..|.+.+.++-+.. .+ -..++......+.|.++.+|..|++.+.-.+...+
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p----- 266 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCP----- 266 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCC-----
Confidence 445555666777889999999999999887621 11 12456666777899999999999775554444321
Q ss_pred cCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhc----hHH----
Q 002877 300 ENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPL----VMP---- 371 (872)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~----l~~---- 371 (872)
++.+ +... -.......+.-+...+.+ .+|.+|..|+++|+.+-....+-+... ++.
T Consensus 267 -~~~e----~e~~--e~kl~D~aF~~vC~~v~D---------~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRR 330 (823)
T KOG2259|consen 267 -APLE----RESE--EEKLKDAAFSSVCRAVRD---------RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRR 330 (823)
T ss_pred -Cccc----chhh--hhhhHHHHHHHHHHHHhc---------CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhh
Confidence 0000 0000 011222233333333332 348899888888877654321111111 111
Q ss_pred ----------------------------------------------HHHhhccCCCcchHHHHHHHHHHhhcCCCccchh
Q 002877 372 ----------------------------------------------FVEANIVKSDWRCREAATYAFGSVLEGPTIDKLA 405 (872)
Q Consensus 372 ----------------------------------------------~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~ 405 (872)
.+...+.|+-..+|.+|+..++.++..- |.
T Consensus 331 kr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~--- 406 (823)
T KOG2259|consen 331 KRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PG--- 406 (823)
T ss_pred hhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CC---
Confidence 0111111222467888888888887644 22
Q ss_pred HhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHH
Q 002877 406 PLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYL 484 (872)
Q Consensus 406 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l 484 (872)
+-...+.++...++|+...||..|..++..++.++. .-+..++.++..|.| ++.||++.-..|
T Consensus 407 -FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------------i~eeql~~il~~L~D~s~dvRe~l~elL--- 470 (823)
T KOG2259|consen 407 -FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------------IREEQLRQILESLEDRSVDVREALRELL--- 470 (823)
T ss_pred -cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------------ecHHHHHHHHHHHHhcCHHHHHHHHHHH---
Confidence 334677888899999999999999999999887754 234567777778888 888887655533
Q ss_pred HHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 485 AQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
..+ .-.=...+...+..+++.+..+.. . |...+.|+..+.+..+
T Consensus 471 -~~~------~~~d~~~i~m~v~~lL~~L~kyPq---D-rd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 471 -KNA------RVSDLECIDMCVAHLLKNLGKYPQ---D-RDEILRCMGRIGQNHR 514 (823)
T ss_pred -Hhc------CCCcHHHHHHHHHHHHHHhhhCCC---C-cHHHHHHHHHHhccCh
Confidence 333 222235677788888888887652 1 6778888888888777
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.40 E-value=1.7e-06 Score=69.47 Aligned_cols=87 Identities=15% Similarity=0.342 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCC
Q 002877 625 VHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 625 v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 704 (872)
.|..++.+++.++...+..+.+|++.++|.++.++.+. +..||..||+++..+++..+..+.+|++++++.|.+...++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47788999999999999999999999999999999886 46699999999999999999999999999999999999988
Q ss_pred CCCCCCchhH
Q 002877 705 QLNRSVKPPI 714 (872)
Q Consensus 705 ~~~~~~~~~~ 714 (872)
+.+||..+
T Consensus 81 --d~~Vr~~a 88 (97)
T PF12755_consen 81 --DENVRSAA 88 (97)
T ss_pred --chhHHHHH
Confidence 78887765
No 94
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=0.0099 Score=67.55 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=83.4
Q ss_pred HHHHhhcCCChhHhhHHHHHHHHHHHhhcCCC-------CchH-HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCcc
Q 002877 96 LLLRTLASPVPEARHTSAQVIAKIASIEIPQK-------QWPE-LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQ 167 (872)
Q Consensus 96 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~-------~~~~-ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 167 (872)
.++..|..++-.+|+..-++++.++....... ..++ +++.+.+.+.+- ++-+|..+++++..+++.-.
T Consensus 316 ~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv--sa~vRskVLqv~~~l~~~~s-- 391 (1251)
T KOG0414|consen 316 LLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV--SAYVRSKVLQVFRRLFQQHS-- 391 (1251)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHccC--
Confidence 44555666788899999999998887654321 2233 888889999888 89999999999999999742
Q ss_pred ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 002877 168 DLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 168 ~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 207 (872)
.. ......++......+.| .+.-||+.|++.+..++.
T Consensus 392 ~p-~~~~~eV~~la~grl~D--kSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 392 IP-LGSRTEVLELAIGRLED--KSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred CC-ccHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHHh
Confidence 22 45678888888999988 789999999999998874
No 95
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.35 E-value=6.4e-07 Score=64.33 Aligned_cols=55 Identities=29% Similarity=0.545 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRI 437 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 437 (872)
|.+|.+|+.+||.++... ++...++++.+++.+...|.|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999988887 4888999999999999999999999999999999875
No 96
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.0073 Score=66.96 Aligned_cols=137 Identities=17% Similarity=0.156 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCChhHHHHHHHHHhhcccCCcccchHHHHhhhh
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVN-NEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWL 83 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~ 83 (872)
+.+++.++.+.|.++++--.-+|..+.+.+|...+..+=.+..+ .+.++.+|.+|...+...=
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~---------------- 120 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR---------------- 120 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC----------------
Confidence 56788888899999999999999999998776665555555444 3568999999988875321
Q ss_pred cCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchH--HHHHHHHhhccCCccHHHHHHHHHHHHHhh
Q 002877 84 AIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPE--LIRSLLNNMTQQDSLAALKQATLETLGYVC 161 (872)
Q Consensus 84 ~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~--ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 161 (872)
.++...++-..+.+++.++++.||+.|+-+++.+.+.+ + .-+++ +...+...+.++ +|.+...|+..+..+.
T Consensus 121 --~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~-~l~~~~g~~~~l~~l~~D~--dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 121 --VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-K-DLYHELGLIDILKELVADS--DPIVIANALASLAEID 194 (757)
T ss_pred --hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-H-hhhhcccHHHHHHHHhhCC--CchHHHHHHHHHHHhc
Confidence 24455677778889999999999999999999999776 3 23444 344455555566 8999999999998888
Q ss_pred hc
Q 002877 162 EE 163 (872)
Q Consensus 162 ~~ 163 (872)
.+
T Consensus 195 ~e 196 (757)
T COG5096 195 PE 196 (757)
T ss_pred hh
Confidence 76
No 97
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.30 E-value=0.0005 Score=72.76 Aligned_cols=261 Identities=13% Similarity=0.159 Sum_probs=155.1
Q ss_pred cCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccC--CCcchhHHHHH
Q 002877 451 ISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRT--DVGGSKLRSAA 527 (872)
Q Consensus 451 ~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~--~~~~~~vr~~a 527 (872)
...++.+.++..|+..+.. ...--+....++.+++-.. ++.+.|+...+++.+...+... +..+...-+..
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~------~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVL------QEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHS------TTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 4567889999999988863 1111123355666666655 7778888888888887766421 12345568999
Q ss_pred HHHHHHHHhcCCCcccH----HHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhc
Q 002877 528 YETLNEVVRCSNITETS----QIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFI 603 (872)
Q Consensus 528 ~~al~~l~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 603 (872)
+|+++.+++... ..-. .+.+.++|.+...|.+-+ .+..-++...+..+++..... .+
T Consensus 93 FEsi~~lir~~~-~~~~~~v~~~E~~L~P~f~~ILq~dV-------------~EF~PYvfQIla~Lle~~~~~-----~~ 153 (435)
T PF03378_consen 93 FESIGALIRFVC-EADPEAVSQFEEALFPPFQEILQQDV-------------QEFIPYVFQILAQLLELRPSS-----PL 153 (435)
T ss_dssp HHHHHHHHHHS--GGGHH---HHHHHHHHHHHHHHHTT--------------TTTHHHHHHHHHHHHHHSS-------S-
T ss_pred HHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHcCCCC-----CC
Confidence 999999999866 3322 455567777777666432 233456677788877776621 34
Q ss_pred hhhHHHHHHHHHH-HHccCChhHHHHHHHHHHHHHHHhhhHHH--hhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHH
Q 002877 604 LQTADQIMVLFLR-VFACRSSTVHEEAMLAIGALAYATGPEFA--KYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 604 ~~~~~~l~~~l~~-~l~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 680 (872)
.+...++++.++. .+......+ -.....+.++....+..+. +++..++....+.+.+... -..++..+..+..
T Consensus 154 p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~---D~~gF~LL~~iv~ 229 (435)
T PF03378_consen 154 PDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN---DHYGFDLLESIVE 229 (435)
T ss_dssp -TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc---chHHHHHHHHHHH
Confidence 4443444443332 122222233 2233455555555555553 5777888877777765422 1458889999999
Q ss_pred Hhc-CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccc-hhhhHHHHHHHHH
Q 002877 681 ALD-DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVH-FEKYVPHALQMMQ 741 (872)
Q Consensus 681 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~i~~~l~ 741 (872)
.++ +.+.+|+++|+..++..|++... ...+...+.+++-++...|.+ +...++.+-+.++
T Consensus 230 ~~p~~~l~~yl~~I~~lll~RLq~skT-~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF 291 (435)
T PF03378_consen 230 NLPPEALEPYLKQIFTLLLTRLQSSKT-EKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLF 291 (435)
T ss_dssp HS-HHHHGGGHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcH
Confidence 987 46899999999999999986642 334445556667666666543 3455554444333
No 98
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0013 Score=67.07 Aligned_cols=272 Identities=11% Similarity=0.092 Sum_probs=172.5
Q ss_pred HHHHHHHHHHcCCCccchhhch--hhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhc
Q 002877 583 CGVLQVIIQKFSSTDATKSFIL--QTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQ 660 (872)
Q Consensus 583 ~~~l~~l~~~~~~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 660 (872)
...+..+++..++. .+. +.+..++..+..-..+++..+|..|+..+++++..++.....|.+.++..+...|-
T Consensus 235 itd~Af~ael~~~~-----~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~ 309 (533)
T KOG2032|consen 235 ITDIAFFAELKRPK-----ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY 309 (533)
T ss_pred HHHHHHHHHHhCcc-----cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh
Confidence 34455556666553 222 34567777777777788889999999999999999889999999999999999988
Q ss_pred ccchHhHHHHHHHHHHHHHHHh-cCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhh-hHHHHH-
Q 002877 661 NSEEYQVCAITVGVVGDVCRAL-DDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEK-YVPHAL- 737 (872)
Q Consensus 661 ~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~i~- 737 (872)
+..+.+|...++.+|..+.... +.++.+|+-++.-.+...+.+. +.++|.+++..+|.++...|..... |.+.+.
T Consensus 310 D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k 387 (533)
T KOG2032|consen 310 DDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKK 387 (533)
T ss_pred cCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHh
Confidence 8777789999999998887665 4778899988888888888877 8999999999999999987754433 233332
Q ss_pred -------------HHHHHHHHhccc---cCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHH
Q 002877 738 -------------QMMQEAAKACAQ---LDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELI 801 (872)
Q Consensus 738 -------------~~l~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~ 801 (872)
|.+..+++...- +...-+|...+..+.-+.-.-.+..+-... -....++.+.++.++...
T Consensus 388 ~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~----c~~L~~i~~d~l~~~~t~ 463 (533)
T KOG2032|consen 388 RLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQW----CIQLNHIHPDILMLLLTE 463 (533)
T ss_pred ccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHH----HHHHhhhCHHHHHHHHHh
Confidence 222222221100 000001111111100000000011111110 012455666666555432
Q ss_pred ----hcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 002877 802 ----FKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMINR 868 (872)
Q Consensus 802 ----~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 868 (872)
++. .-|.+|.++...-+.+.....+..-+......+...+ .....++-|+++..|.-|+|.+.+
T Consensus 464 ~~~~f~s--swe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~l-s~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 464 DQHIFSS--SWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSL-STLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred chhheec--chHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHH-HHHccCCCchhHHHHHHHhhhHhh
Confidence 222 3457888887777777777766544333333333333 335789999999999999998764
No 99
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.28 E-value=2.5e-06 Score=74.07 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=86.5
Q ss_pred hHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 369 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
+++.+.+.+.+.+|..|+.++.+++.++... +......+. .+++.+.+.+.|+++.++..+++++++++...+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~---- 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED---- 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH----
Confidence 4566666777888999999999999999875 244444555 8999999999999999999999999999865432
Q ss_pred ccccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHH
Q 002877 448 FSVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLA 485 (872)
Q Consensus 448 ~~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
...... ..+++.+.+.+.+ +..++..+++++.+++
T Consensus 83 ---~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 ---NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ---HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111222 2378888888888 8999999999999886
No 100
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.011 Score=64.07 Aligned_cols=363 Identities=13% Similarity=0.137 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhcc---CCCcchhHHHHHHHHHHHHHhcCC-CcccHHHH
Q 002877 472 NVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADR---TDVGGSKLRSAAYETLNEVVRCSN-ITETSQII 547 (872)
Q Consensus 472 ~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~---~~~~~~~vr~~a~~al~~l~~~~~-~~~~~~~~ 547 (872)
.+|-.|-..+..+.+.+ ++.+.|++-.++..-..+... .+-+..-.+.+++.+.+....... .-++...+
T Consensus 412 ~lRPCaE~L~~~lF~~y------sqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl 485 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAY------SQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWL 485 (978)
T ss_pred ccchhHHHHHHHHHHHH------HHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444444445555555 555666666555544443310 011122346677777765554433 12233333
Q ss_pred H-HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchh-hHHHHHHHHHHHHccC-Chh
Q 002877 548 A-ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQ-TADQIMVLFLRVFACR-SST 624 (872)
Q Consensus 548 ~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~-~~~ 624 (872)
. .++|.+- .+....--+|..+...++.-+.. .++. .-+.++..++..+.+. |..
T Consensus 486 ~~~llpEl~--------------~~~~~~RiiRRRVa~ilg~Wvsv---------q~~~e~k~l~Y~a~lnLL~d~~D~v 542 (978)
T KOG1993|consen 486 QEALLPELA--------------NDHGNSRIIRRRVAWILGQWVSV---------QQKLELKPLLYCAFLNLLQDQNDLV 542 (978)
T ss_pred HHhhCHHhh--------------hcccchhHHHHHHHHHHhhhhhe---------echHhHHHHHHHHHHHhcCccccce
Confidence 3 2223321 11223344677788888776542 1111 2346788888888877 778
Q ss_pred HHHHHHHHHHHHHHHh---hhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 002877 625 VHEEAMLAIGALAYAT---GPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNAL 701 (872)
Q Consensus 625 v~~~a~~~l~~l~~~~---~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 701 (872)
||-.+..++..+..-. ++.|.||++.+...+.+.+...+..+.|...+..++.++...++.+.||...++..+-...
T Consensus 543 V~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LW 622 (978)
T KOG1993|consen 543 VRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLW 622 (978)
T ss_pred eehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888888888777643 4789999999999999999877677789999999999999999999999988877766666
Q ss_pred cCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhcccc-------------------CCCchHHHHHHH
Q 002877 702 SNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQL-------------------DMEDEELIDYGN 762 (872)
Q Consensus 702 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~-------------------~~~d~~~~~~~~ 762 (872)
...+.++-+|...+.++.++..++|..-.++.+-++|.+.-+....... ..-+++.....+
T Consensus 623 e~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p 702 (978)
T KOG1993|consen 623 EESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFP 702 (978)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHH
Confidence 6555467788889999999999999877777777777776553221100 011222211111
Q ss_pred ---HHHHH---HHHHHHhHhhccchh-hhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhcc
Q 002877 763 ---QLRSS---IFEAYSGILQGFKSA-RAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFK 835 (872)
Q Consensus 763 ---~~~~~---~~~~~~~~~~~l~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 835 (872)
..-+. .+.....++.+.--- .+.-...|...+++.+.+.+.+ -.++-..+.+.++.-+++.-+ .++.++
T Consensus 703 ~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~d--vr~egl~avLkiveili~t~~--il~~~~ 778 (978)
T KOG1993|consen 703 HLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDD--VRNEGLQAVLKIVEILIKTNP--ILGSLL 778 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHhhhH--HHHhhh
Confidence 11111 112222222221100 2233456777788777776643 233434455555555555433 444466
Q ss_pred CchHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHh
Q 002877 836 DSSFCNDFMSE-CLRSDDEQLKETAGWTQGMINRVL 870 (872)
Q Consensus 836 ~~~~v~~ll~~-~~~~~~~~~~~~a~~~~~~~~~~~ 870 (872)
.++.++.+... +.++..| -..+|=++.++|+.
T Consensus 779 ~~~~L~~lf~~I~~~~~yP---~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 779 FSPLLSRLFLSIAENDKYP---YVMGEYLLVVARIS 811 (978)
T ss_pred cchhhHHHHHHHHhCCCCc---hhHHHHHHHHHHHH
Confidence 77777777766 3334444 45778888888875
No 101
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.011 Score=63.98 Aligned_cols=472 Identities=14% Similarity=0.135 Sum_probs=229.6
Q ss_pred hcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhh
Q 002877 83 LAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCE 162 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 162 (872)
..++......+.-.+.+++++.+..+|+..-.++..+.... ..---....+..-.+.. ++..|-.|+..|.++..
T Consensus 55 e~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~is---edviivtsslmkD~t~~--~d~yr~~AiR~L~~I~d 129 (865)
T KOG1078|consen 55 EHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKIS---EDVIIVTSSLMKDMTGK--EDLYRAAAIRALCSIID 129 (865)
T ss_pred cccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc---hhhhhhhHHHHhhccCC--CcchhHHHHHHHHhhcC
Confidence 35666566666667778889999999998888887765443 11222334444443333 56678788888877765
Q ss_pred ccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHH
Q 002877 163 EISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAF 242 (872)
Q Consensus 163 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 242 (872)
.-. ..... ..+.+++-+ .++.++.+|+-.-.+++. .+++. ..-+.+-+.....+.+.-++-.++
T Consensus 130 ~~m-----~~~ie---ry~kqaivd--~~~avSsaalvss~hll~---~~~~~---vkrw~neiqea~~s~~~m~QyHal 193 (865)
T KOG1078|consen 130 GTM-----LQAIE---RYMKQAIVD--KNPAVSSAALVSSYHLLP---ISFDV---VKRWANEVQEAVNSDNIMVQYHAL 193 (865)
T ss_pred cch-----hHHHH---HHHHhHeec--cccccchHHHHHHhhhhc---ccHHH---HHHHHHhhhhccCcHHHHHHHHHH
Confidence 421 11122 223344444 444555544433333222 11111 111333344444444444555555
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHH-HhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHh
Q 002877 243 ECLVSIASTYYEVLEPYMQTLFELTSN-AVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSS 321 (872)
Q Consensus 243 ~~l~~l~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 321 (872)
..+..+-....-.+ ..++..... .++++- .+..-+..-..+.+.. ......
T Consensus 194 glLyqirk~drla~----sklv~~~~~~~~~~~~--A~~~lir~~~~~l~~~----------------------~~~~s~ 245 (865)
T KOG1078|consen 194 GLLYQIRKNDRLAV----SKLVQKFTRGSLKSPL--AVCMLIRIASELLKEN----------------------QQADSP 245 (865)
T ss_pred HHHHHHHhhhHHHH----HHHHHHHccccccchh--HHHHHHHHHHHHhhhc----------------------ccchhh
Confidence 55555433221111 122222221 111111 0100010011111110 111223
Q ss_pred hHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCc
Q 002877 322 LVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTI 401 (872)
Q Consensus 322 l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~ 401 (872)
+++.+-.++.... -.+..-|+.++..+....+..+.| ....++.+++++..-.|.+|++.|+.++... |
T Consensus 246 ~~~fl~s~l~~K~---------emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~-P 314 (865)
T KOG1078|consen 246 LFPFLESCLRHKS---------EMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKH-P 314 (865)
T ss_pred HHHHHHHHHhchh---------HHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC-C
Confidence 4555555554322 234555566666666666666656 6677788888999999999999999998755 2
Q ss_pred cchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHh---hc-ChHHHHHH
Q 002877 402 DKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESI---KD-APNVAEKV 477 (872)
Q Consensus 402 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l---~d-~~~v~~~a 477 (872)
..+. ..-.-+-...+|.| |..+..++.-+.+.-. ...+..++..+...+ .| ...|-.
T Consensus 315 ~~v~----~cN~elE~lItd~N---rsIat~AITtLLKTG~----------e~sv~rLm~qI~~fv~disDeFKivvv-- 375 (865)
T KOG1078|consen 315 QAVT----VCNLDLESLITDSN---RSIATLAITTLLKTGT----------ESSVDRLMKQISSFVSDISDEFKIVVV-- 375 (865)
T ss_pred cccc----ccchhHHhhhcccc---cchhHHHHHHHHHhcc----------hhHHHHHHHHHHHHHHhccccceEEeH--
Confidence 3322 11123334446666 3444444444443222 234455555444444 44 333433
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q 002877 478 CGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGR 557 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~ 557 (872)
.++..+|..+ + .-...+++.|...+.. ......+....+++..++...+ +.-.+-+..+...+
T Consensus 376 -dai~sLc~~f------p----~k~~~~m~FL~~~Lr~--eGg~e~K~aivd~Ii~iie~~p-dsKe~~L~~LCefI--- 438 (865)
T KOG1078|consen 376 -DAIRSLCLKF------P----RKHTVMMNFLSNMLRE--EGGFEFKRAIVDAIIDIIEENP-DSKERGLEHLCEFI--- 438 (865)
T ss_pred -HHHHHHHhhc------c----HHHHHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHH---
Confidence 3444444443 1 2234556666666653 2345558889999999988776 43333333333222
Q ss_pred HHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHH
Q 002877 558 LGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALA 637 (872)
Q Consensus 558 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 637 (872)
..+ . ........++-+.+..+... .-..|.-.+++.+. |. +..+|.+|..+++.+.
T Consensus 439 -EDc------------e---~~~i~~rILhlLG~EgP~a~----~Pskyir~iyNRvi--LE--n~ivRaaAv~alaKfg 494 (865)
T KOG1078|consen 439 -EDC------------E---FTQIAVRILHLLGKEGPKAP----NPSKYIRFIYNRVI--LE--NAIVRAAAVSALAKFG 494 (865)
T ss_pred -Hhc------------c---chHHHHHHHHHHhccCCCCC----CcchhhHHHhhhhh--hh--hhhhHHHHHHHHHHHh
Confidence 221 0 00111222222222222111 11124444554432 22 4567888888877775
Q ss_pred HHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHH
Q 002877 638 YATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVC 679 (872)
Q Consensus 638 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 679 (872)
.. .+ ...+.+...+.+++.+.+ .++|..|-..+..+-
T Consensus 495 ~~-~~---~l~~sI~vllkRc~~D~D-devRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 495 AQ-DV---VLLPSILVLLKRCLNDSD-DEVRDRATFYLKNLE 531 (865)
T ss_pred cC-CC---CccccHHHHHHHHhcCch-HHHHHHHHHHHHHhh
Confidence 11 11 123345555556666554 357777766666554
No 102
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=0.011 Score=63.57 Aligned_cols=303 Identities=10% Similarity=0.112 Sum_probs=162.8
Q ss_pred CCcchhhhHHHHHHHHHhhcCCcc--------hh-----chHHHH-HhhccCCCcchHHHHHHHHHHhhcCCC-ccchhH
Q 002877 342 SIWNISMAGGTCLGLVARTVGDEV--------VP-----LVMPFV-EANIVKSDWRCREAATYAFGSVLEGPT-IDKLAP 406 (872)
Q Consensus 342 ~~~~~r~~a~~~l~~l~~~~~~~~--------~~-----~l~~~l-~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~~~ 406 (872)
.+|..-..|...+-.+++..+... .+ .+++.+ ...+. ....+...+..+..+..... ...-..
T Consensus 452 ~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~--~h~h~lVqLlfmE~ivRY~kff~~esq 529 (980)
T KOG2021|consen 452 ESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVL--AHDHELVQLLFMELIVRYNKFFSTESQ 529 (980)
T ss_pred chHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccc--cCCchHHHHHHHHHHHHHHHHHhcchh
Confidence 348888888888888888764221 11 112222 11111 12233445555555554210 011122
Q ss_pred hHHhHHHHHHH--hcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHH----------
Q 002877 407 LVHAGFDFLLN--AMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNV---------- 473 (872)
Q Consensus 407 ~l~~l~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v---------- 473 (872)
+++.++...+. ++.+.+.+||.+|.+...|+.+.+.. ..-++++.++..+-..++. .+..
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkk-------qlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~f 602 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKK-------QLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIF 602 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcCcCCCcCccccccccc
Confidence 34444444332 24577899999999999999998876 4445666666665555521 1110
Q ss_pred --HHHHHHHHHHHHHhhccCCCC--------CCCchhhHHHHHHHHH-HhhccCCCcchhH----HHHHHHHHHHHHhcC
Q 002877 474 --AEKVCGAIYYLAQGYEDAGPS--------SSLLSPYLTSIIAELL-RAADRTDVGGSKL----RSAAYETLNEVVRCS 538 (872)
Q Consensus 474 --~~~a~~al~~l~~~~~~~~~~--------~~~l~~~~~~il~~l~-~~l~~~~~~~~~v----r~~a~~al~~l~~~~ 538 (872)
+..-..+++-+... .+.+ ..-+.|-..+..-.+. ..+.+ | +...+ ...++-|++++.+..
T Consensus 603 ddqlyIfEtiGviI~l---~n~paE~qaay~~~litpl~~~~~igl~~a~las-d-e~~pv~Ia~c~~~lmaig~lakgf 677 (980)
T KOG2021|consen 603 DDQLYIFETIGVIITL---NNSPAELQAAYANTLITPLILDQIIGLLFAQLAS-D-EASPVVIAECHHILMAIGTLAKGF 677 (980)
T ss_pred cccceeeecceEEEeC---CCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhc-c-ccccHHHHHHHHHHHHHHHHhhcc
Confidence 00000011111000 0000 1112222222222222 22221 2 22211 345666777777765
Q ss_pred CCcc--------cHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHH
Q 002877 539 NITE--------TSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQI 610 (872)
Q Consensus 539 ~~~~--------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l 610 (872)
+ .. ....+.+.++.++-.+... ....++|..+-.+++.++..+|+ .+.||++++
T Consensus 678 ~-~rlvt~~qvg~~~vf~~~ldvil~~ls~f-----------~k~E~iRsavrft~hRmI~~lg~------~vlPfipkl 739 (980)
T KOG2021|consen 678 H-IRLVTENQVGNMVVFSNILDVILVTLSFF-----------NKFENIRSAVRFTFHRMIPILGN------KVLPFIPKL 739 (980)
T ss_pred c-ccCcchhcccHHHHHHHHHHHHHHHHhhc-----------cccchhHHHHHHHHHHHHHhcch------hhhcchHHH
Confidence 5 21 2334445555555544432 23456888888999999999999 899999988
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhccc--------------chHhHHHHHHHHHH
Q 002877 611 MVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNS--------------EEYQVCAITVGVVG 676 (872)
Q Consensus 611 ~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~--------------~~~~v~~~a~~~l~ 676 (872)
++.++ ++.+..--..-+..++.+...++....+.+++++|.+...+-+. +....|.+.+..+.
T Consensus 740 ie~lL---~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r~a~p~dt~aa~ek~~lrksy~~fLq 816 (980)
T KOG2021|consen 740 IELLL---SSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIERIAKPIDTAAAAEKILLRKSYCTFLQ 816 (980)
T ss_pred HHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChhHHHHHHHHHHHHHHHHH
Confidence 88665 44444444456778899988888888888888888776544321 11235666666666
Q ss_pred HHH
Q 002877 677 DVC 679 (872)
Q Consensus 677 ~l~ 679 (872)
.+.
T Consensus 817 tft 819 (980)
T KOG2021|consen 817 TFT 819 (980)
T ss_pred HHh
Confidence 554
No 103
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.26 E-value=0.00015 Score=70.97 Aligned_cols=247 Identities=17% Similarity=0.179 Sum_probs=160.5
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 002877 135 SLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQ 214 (872)
Q Consensus 135 ~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 214 (872)
.|-..++++ ++..|..|+.+|+.+.+.+.++.++......++..+...+.|. ..+. .+++++..++.. + .+.
T Consensus 3 ~Lg~~Ltse--d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~---~~~~-~~l~gl~~L~~~-~-~~~ 74 (262)
T PF14500_consen 3 SLGEYLTSE--DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH---ACVQ-PALKGLLALVKM-K-NFS 74 (262)
T ss_pred chhhhhCCC--CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH---hhHH-HHHHHHHHHHhC-c-CCC
Confidence 344567777 8999999999999999999766665667778888888888652 2333 347777776632 1 122
Q ss_pred hhhHHHHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC-CChHHHHHHHHhHhHHhH
Q 002877 215 NEMERNYIMKVVCETA--KSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG-DEEAVALQAVEFWSSICD 291 (872)
Q Consensus 215 ~~~~~~~ll~~l~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~al~~l~~l~~ 291 (872)
... ...+++.+++.. ++.....|..+++++..+++.+...+...-..++..++..+.. .||..-..+++.+..+..
T Consensus 75 ~~~-~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 75 PES-AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhh-HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 222 223555555533 3445678999999999999998777755555666666666655 588888899998888776
Q ss_pred hhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHh---cccCCcccCCCCcchhhhHHHHHHHHHhhc--CCcch
Q 002877 292 EEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLL---KQEEDQDQDDSIWNISMAGGTCLGLVARTV--GDEVV 366 (872)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~---~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~--~~~~~ 366 (872)
.-. . .+..+.++.++....- .+..+ |. ..+ ...+.-..+..++ ...+.
T Consensus 154 ~~~-------------------~-~~~~e~lFd~~~cYFPI~F~pp~~---dp--~~I--T~edLk~~L~~cl~s~~~fa 206 (262)
T PF14500_consen 154 EFD-------------------I-SEFAEDLFDVFSCYFPITFRPPPN---DP--YGI--TREDLKRALRNCLSSTPLFA 206 (262)
T ss_pred hcc-------------------c-chhHHHHHHHhhheeeeeeeCCCC---CC--CCC--CHHHHHHHHHHHhcCcHhhH
Confidence 521 1 2333344444332211 11111 10 111 1111222222222 35667
Q ss_pred hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHH
Q 002877 367 PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLN 417 (872)
Q Consensus 367 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~ 417 (872)
|..+|.+.+.+.++....+.-++..+...+...+.+.+.+|...++..+-.
T Consensus 207 ~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 207 PFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 889999999999988889999999998888777667788888888876644
No 104
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00054 Score=69.81 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=125.4
Q ss_pred hhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCC
Q 002877 366 VPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPA 445 (872)
Q Consensus 366 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
.+.++..+-+...+..|..|.+....++.+......+ -.+.+..++-.+.....|++..+|..|+..|++.+...+.
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~-~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~-- 291 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPKELD-KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD-- 291 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCccccc-ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH--
Confidence 3344444444445567989988888888776533211 1245777888888888999999999999999999988765
Q ss_pred CCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhH
Q 002877 446 TGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKL 523 (872)
Q Consensus 446 ~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~v 523 (872)
....+.+.++..++.++-| +..|...+..++..+.+... ...+.+|+-++.-.+...+.. ++.++
T Consensus 292 -----kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-----~~~l~~~~l~ialrlR~l~~s---e~~~~ 358 (533)
T KOG2032|consen 292 -----KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-----NDDLESYLLNIALRLRTLFDS---EDDKM 358 (533)
T ss_pred -----HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-----hcchhhhchhHHHHHHHHHHh---cChhh
Confidence 5667888999999999887 89999999999998888765 778889998988888888863 44677
Q ss_pred HHHHHHHHHHHHhcCCCccc
Q 002877 524 RSAAYETLNEVVRCSNITET 543 (872)
Q Consensus 524 r~~a~~al~~l~~~~~~~~~ 543 (872)
|.+++..++.+....+ ...
T Consensus 359 R~aa~~Lfg~L~~l~g-~~~ 377 (533)
T KOG2032|consen 359 RAAAFVLFGALAKLAG-GGW 377 (533)
T ss_pred hhhHHHHHHHHHHHcC-CCc
Confidence 9999999999999887 443
No 105
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.23 E-value=0.045 Score=68.96 Aligned_cols=433 Identities=12% Similarity=0.152 Sum_probs=246.1
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccC----CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVK----SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM 419 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~----~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l 419 (872)
...+.++...+++++...+..++|.+.....+..+. ..-+..+-...-+..+.... +.-+.+++..++..++.-+
T Consensus 579 l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~-~~~i~~~v~~~l~~~~~~~ 657 (2341)
T KOG0891|consen 579 FAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS-PVLISPYVGPILLVLLPKL 657 (2341)
T ss_pred hhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH-HHHHHhhcCchHHHHHHHH
Confidence 455666666666666655555555443333332221 11111111111111111111 2445567777777888888
Q ss_pred CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCC
Q 002877 420 RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSL 497 (872)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (872)
.++.+.+-.++..+++.++..... ....+.+..++.+.+.+.+ +..-|.++..++++++... +-.
T Consensus 658 ~~~~s~~~~~~~~~~~eL~~v~g~-------~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~------~~~ 724 (2341)
T KOG0891|consen 658 QDPSSGVEKAVLETIGELCAVGGE-------EMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESST------GYV 724 (2341)
T ss_pred hccchhhHHHHHHHHHHHHHhccc-------hhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc------ceE
Confidence 999999999999999999987764 2333445666666677776 7777888999999998765 333
Q ss_pred chhh--HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH---------------HHHHHH
Q 002877 498 LSPY--LTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAI---------------MGRLGQ 560 (872)
Q Consensus 498 l~~~--~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l---------------~~~l~~ 560 (872)
+.|| .+.++..+...+.... ...+|..+...++.+....+ |........ ...+..
T Consensus 725 v~p~~~~P~ll~~l~~~~~te~--~~~ir~~~v~~~g~~g~~d~------~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 796 (2341)
T KOG0891|consen 725 VDPYLDYPELLDILINILKTEQ--SSTIRREAIRLLGLLGALDP------YKHKVTEGTSASKISSEQIKSDIDISLLES 796 (2341)
T ss_pred ecccccChHHHHHHHHHHhHhh--hhHHHHHHHHHhhhhcccch------hHHHHHhhhhhHhhhhccccccchHHHHHh
Confidence 4443 4566666666555322 34557777777764433322 110000000 000000
Q ss_pred H-------------HhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHH
Q 002877 561 T-------------LELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHE 627 (872)
Q Consensus 561 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~ 627 (872)
. +........|+... .-......+...+....+. ....+.+++++.++..........++
T Consensus 797 ~~~~~~~e~~p~v~I~~l~~~l~d~~~~-~~l~~~~~a~~~i~~~~~~------~~~l~l~qv~~~~~~~~r~~~~~~~~ 869 (2341)
T KOG0891|consen 797 GVNPSNDEYYPAVTIHALMGILKDPSLS-IHHTAVAQAIMHIFQSLGL------KCVLFLDQVIPTLIDVMRSCPPNLRE 869 (2341)
T ss_pred hhhhhhhhhhhHHHHHHHhhhhhhhhhH-HHHHHhhhchhHHHHhhcc------chhhhHHHHHHHHHHHHHhcCcchhH
Confidence 0 00000000010000 0012233455566666666 67788899998888887765666666
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCC
Q 002877 628 EAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLN 707 (872)
Q Consensus 628 ~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 707 (872)
..+..++....-...+..+|++.+...+..... .+..+.......+..+....+..|..|++...+..+..+. . +
T Consensus 870 f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~--~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~-~--~ 944 (2341)
T KOG0891|consen 870 FYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWP--PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQ-H--D 944 (2341)
T ss_pred HHHHhhhhhhhccchhHhhhhhhHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeec-c--c
Confidence 666555555554556667777766666655543 2334556667777888888888899999888887777663 2 2
Q ss_pred CCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhh
Q 002877 708 RSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVM 787 (872)
Q Consensus 708 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 787 (872)
...-.....-...-....|.....|...+.|.+.+-+... ......+..++.+......+. .+
T Consensus 945 ~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~-----------~~~~~~~~~~l~t~~~l~~~~------~~ 1007 (2341)
T KOG0891|consen 945 KSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDP-----------TVPLSIRKSALITIGRLAQQV------DL 1007 (2341)
T ss_pred ccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhh-----------hhhHHHHhhHHHHHHHHHHhh------HH
Confidence 2221222222222233356666677777777777654431 112345555555555555443 25
Q ss_pred hhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcch
Q 002877 788 MPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNT 830 (872)
Q Consensus 788 ~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 830 (872)
..|...+...+.+.+.. . .+++..++..++.+....|...
T Consensus 1008 ~~~~s~i~~~~~r~l~~--s-~el~~~~~~~l~~l~~~~~~~~ 1047 (2341)
T KOG0891|consen 1008 SEYASRIIHPLVRVLSS--S-PELRDVIMDTLIALVKQLGKDF 1047 (2341)
T ss_pred HHHHHHHHHHHHHhhcc--c-hhHHHHHHHHHHHHHHhhcCce
Confidence 55666666666555543 2 8999999999999999999874
No 106
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.22 E-value=0.00016 Score=80.35 Aligned_cols=367 Identities=13% Similarity=0.196 Sum_probs=193.7
Q ss_pred HHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHH
Q 002877 387 AATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLES 466 (872)
Q Consensus 387 aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 466 (872)
.++..|..+++... -..+-.-..+++.|++.|+.++..+...+..+|.+++-+-.. ...-.-..+++.|.+.
T Consensus 268 v~~~lLlNLAed~~-ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN-------K~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 268 VAFYLLLNLAEDPR-VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN-------KDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHhcChH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-------HHHHHHcCCHHHHHHH
Confidence 56677888887653 222323348899999999999999999999999888744332 0111123577888888
Q ss_pred hhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH--HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCccc
Q 002877 467 IKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL--TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITET 543 (872)
Q Consensus 467 l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~ 543 (872)
+.. +..++..+..+|.++..+. .+.+.+ .+++|.+...+... +.+..++..+..+...-.....
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~--------~~R~~mV~~GlIPkLv~LL~d~-----~~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDP--------ELRSQMVSLGLIPKLVELLKDP-----NFREVALKILYNLSMDDEARSM 406 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCH--------HHHHHHHHCCCcHHHHHHhCCC-----chHHHHHHHHHHhccCHhhHHH
Confidence 887 8889999999999887542 122222 24677888777622 2256666666666553220111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhch--hhHHHHHHHHHHHHccC
Q 002877 544 SQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFIL--QTADQIMVLFLRVFACR 621 (872)
Q Consensus 544 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~l~~~l~~~l~~~ 621 (872)
..+- ..+|.+++.+...- +. .+...++..+.+++..-.. . ..+. ..++.++... ++..
T Consensus 407 f~~T-dcIp~L~~~Ll~~~-------~~-----~v~~eliaL~iNLa~~~rn---a-qlm~~g~gL~~L~~ra---~~~~ 466 (708)
T PF05804_consen 407 FAYT-DCIPQLMQMLLENS-------EE-----EVQLELIALLINLALNKRN---A-QLMCEGNGLQSLMKRA---LKTR 466 (708)
T ss_pred Hhhc-chHHHHHHHHHhCC-------Cc-----cccHHHHHHHHHHhcCHHH---H-HHHHhcCcHHHHHHHH---Hhcc
Confidence 1111 34566666554321 11 0111122222222110000 0 0000 0122233322 2222
Q ss_pred ChhHHHHHHHHHHHHHHHhhh---HHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHh--cCCccccHH--HHH
Q 002877 622 SSTVHEEAMLAIGALAYATGP---EFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL--DDKVLPFCD--GIM 694 (872)
Q Consensus 622 ~~~v~~~a~~~l~~l~~~~~~---~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~--~i~ 694 (872)
++- .+..+.+++.+-+. .|.+|+..++.. +.+.++.+. .+.++|.++.-. +.....++. .++
T Consensus 467 D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L~~~----v~~~~~ee~---~vE~LGiLaNL~~~~ld~~~ll~~~~ll 535 (708)
T PF05804_consen 467 DPL----LLKLIRNISQHDGPLKELFVDFIGDLAKI----VSSGDSEEF---VVECLGILANLTIPDLDWAQLLQEYNLL 535 (708)
T ss_pred cHH----HHHHHHHHHhcCchHHHHHHHHHHHHHHH----hhcCCcHHH---HHHHHHHHHhcccCCcCHHHHHHhCCHH
Confidence 222 24567777665532 445555554443 444444444 455555554433 223444443 578
Q ss_pred HHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHH--HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHH
Q 002877 695 SLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVP--HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAY 772 (872)
Q Consensus 695 ~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 772 (872)
|.+.+.|..+..+.++.-.+..++|.++. .+..+..+. .+++.+...+....+ | +++--+++-++
T Consensus 536 p~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqe----D-------dE~VlQil~~f 602 (708)
T PF05804_consen 536 PWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQE----D-------DEIVLQILYVF 602 (708)
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCc----h-------HHHHHHHHHHH
Confidence 88888887665455666677788887764 334444443 556666666554321 1 23344455555
Q ss_pred HhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHH
Q 002877 773 SGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLA 823 (872)
Q Consensus 773 ~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~ 823 (872)
..++.- .+ ..+.+..- ..+...+..+..| .|.++|+.+=.+++-++
T Consensus 603 ~~ll~h-~~-tr~~ll~~-~~~~~ylidL~~d--~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 603 YQLLFH-EE-TREVLLKE-TEIPAYLIDLMHD--KNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHHcC-hH-HHHHHHhc-cchHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 555443 11 11222111 3355566666565 57899997766665443
No 107
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.016 Score=62.95 Aligned_cols=138 Identities=16% Similarity=0.223 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHH
Q 002877 693 IMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAY 772 (872)
Q Consensus 693 i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 772 (872)
+++.|.++|.+.. ..+.|..+..++..++...++.=.+-+..+...+..+ +.+.-.
T Consensus 392 ~m~FL~~~Lr~eG-g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc-------------------e~~~i~---- 447 (865)
T KOG1078|consen 392 MMNFLSNMLREEG-GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC-------------------EFTQIA---- 447 (865)
T ss_pred HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc-------------------cchHHH----
Confidence 3444555554422 4566667777777777655554444444444433332 111111
Q ss_pred HhHhhccchh--hhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcC
Q 002877 773 SGILQGFKSA--RAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRS 850 (872)
Q Consensus 773 ~~~~~~l~~~--~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~ 850 (872)
..+++-+|.. ....=..|+..|...+. + .+.-+|.+|..++..+. .+... .. +-|.-++++|+.|
T Consensus 448 ~rILhlLG~EgP~a~~Pskyir~iyNRvi--L----En~ivRaaAv~alaKfg--~~~~~---l~--~sI~vllkRc~~D 514 (865)
T KOG1078|consen 448 VRILHLLGKEGPKAPNPSKYIRFIYNRVI--L----ENAIVRAAAVSALAKFG--AQDVV---LL--PSILVLLKRCLND 514 (865)
T ss_pred HHHHHHHhccCCCCCCcchhhHHHhhhhh--h----hhhhhHHHHHHHHHHHh--cCCCC---cc--ccHHHHHHHHhcC
Confidence 1122223322 11111234455554443 2 35789999999999988 23322 12 2377888889999
Q ss_pred CcHHHHHHHHHHHHHHH
Q 002877 851 DDEQLKETAGWTQGMIN 867 (872)
Q Consensus 851 ~~~~~~~~a~~~~~~~~ 867 (872)
.|.++|+.|.+++..+-
T Consensus 515 ~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 515 SDDEVRDRATFYLKNLE 531 (865)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 99999999999987664
No 108
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.014 Score=61.91 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=108.5
Q ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 4 EITQFLLAA-QSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 4 ~~~~~l~~~-~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
|+..+-..+ .+.|+..|-+||..|.++... |+++..+--++.+. ..+--..+|+..|-+.+...
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--peclskCqlll~~g-s~pYs~mlAst~L~Klvs~~------------ 70 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PECLSKCQLLLERG-SYPYSQMLASTCLMKLVSRK------------ 70 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHcCC------------
Confidence 344444444 567999999999999999998 99999988888875 46677788888887777542
Q ss_pred hcCChHHHHHHHHHHHHhhcCC----ChhHhhHHHHHHHHHHHhhcCCC-----CchHHHHHHHHhhccCCccHHHHHHH
Q 002877 83 LAIDISYKSQVKDLLLRTLASP----VPEARHTSAQVIAKIASIEIPQK-----QWPELIRSLLNNMTQQDSLAALKQAT 153 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~----~~~vr~~~~~~l~~i~~~~~p~~-----~~~~ll~~l~~~l~~~~~~~~~r~~a 153 (872)
..++-+.+-.|++-+++.+... .+.|-..++++++.+.+..|-.. .+.+.+..+...++.+ +.++--.+
T Consensus 71 t~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~--~ve~~~ig 148 (1082)
T KOG1410|consen 71 TPLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD--NVEHCIIG 148 (1082)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC--chHHHHHH
Confidence 3588899999999999998873 37788889999999988766432 3456677777777666 55555666
Q ss_pred HHHHHHhhhcc
Q 002877 154 LETLGYVCEEI 164 (872)
Q Consensus 154 l~~l~~l~~~~ 164 (872)
+.+|.++..+.
T Consensus 149 v~iLsqLvqem 159 (1082)
T KOG1410|consen 149 VQILSQLVQEM 159 (1082)
T ss_pred HHHHHHHHHHh
Confidence 66776666654
No 109
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.17 E-value=0.00033 Score=77.85 Aligned_cols=380 Identities=11% Similarity=0.144 Sum_probs=195.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCch
Q 002877 421 DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLS 499 (872)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~ 499 (872)
.++..+| .++..|.++++.... ...-.-..+++.|++.|.. +..+...+..++.++.-.-.+ .+.+
T Consensus 261 kQeqLlr-v~~~lLlNLAed~~v-------e~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN----K~~m- 327 (708)
T PF05804_consen 261 KQEQLLR-VAFYLLLNLAEDPRV-------ELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN----KDEM- 327 (708)
T ss_pred HHHHHHH-HHHHHHHHHhcChHH-------HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH----HHHH-
Confidence 3333334 667777777765543 1122234577778888876 788877788877777633210 1111
Q ss_pred hhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH--HHHHHHHHHHHHHHhhhhcCcchhhhHHH
Q 002877 500 PYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA--ELLPAIMGRLGQTLELQIVSSDDREKQGD 577 (872)
Q Consensus 500 ~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 577 (872)
.-.++++.+.+.+.. ++..++..++..|..+..... ..+.+- .++|.+...+.+. +
T Consensus 328 -~~~giV~kL~kLl~s---~~~~l~~~aLrlL~NLSfd~~---~R~~mV~~GlIPkLv~LL~d~---------------~ 385 (708)
T PF05804_consen 328 -AESGIVEKLLKLLPS---ENEDLVNVALRLLFNLSFDPE---LRSQMVSLGLIPKLVELLKDP---------------N 385 (708)
T ss_pred -HHcCCHHHHHHHhcC---CCHHHHHHHHHHHHHhCcCHH---HHHHHHHCCCcHHHHHHhCCC---------------c
Confidence 123677788888763 334567788888877765432 222222 3566666655421 1
Q ss_pred HHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHcc-CChhHHHHHHHHHHHHHHHhhh--HHHhhhHHHHHH
Q 002877 578 LQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFAC-RSSTVHEEAMLAIGALAYATGP--EFAKYMPEFYQY 654 (872)
Q Consensus 578 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~--~~~~~l~~i~~~ 654 (872)
.+..++.+|..+.. .+..+ ....+. ..++.+++.+.. ++..+....+.++.+++..-.. .+.. .+.++.
T Consensus 386 ~~~val~iLy~LS~----dd~~r-~~f~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~--g~gL~~ 457 (708)
T PF05804_consen 386 FREVALKILYNLSM----DDEAR-SMFAYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE--GNGLQS 457 (708)
T ss_pred hHHHHHHHHHHhcc----CHhhH-HHHhhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh--cCcHHH
Confidence 22334444444422 11111 121222 356666665543 4555555555555555443221 1111 123344
Q ss_pred HHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhh--ccchhhh
Q 002877 655 LQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAI--GVHFEKY 732 (872)
Q Consensus 655 l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~ 732 (872)
|........++ ..+.++.+++.+-|. ....+...+..+.+.+..++ +. ...+.|+|-++... +.++..+
T Consensus 458 L~~ra~~~~D~----lLlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~-~e---e~~vE~LGiLaNL~~~~ld~~~l 528 (708)
T PF05804_consen 458 LMKRALKTRDP----LLLKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGD-SE---EFVVECLGILANLTIPDLDWAQL 528 (708)
T ss_pred HHHHHHhcccH----HHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCC-cH---HHHHHHHHHHHhcccCCcCHHHH
Confidence 43333222232 234566777766542 12222334444555565543 32 45666777666543 3356666
Q ss_pred HH--HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHh
Q 002877 733 VP--HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDEN 810 (872)
Q Consensus 733 l~--~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 810 (872)
+. .++|.+...+..... ++ ++.-.++..+..++. ...+...+. -..+++.+..++..+..+++
T Consensus 529 l~~~~llp~L~~~L~~g~~----~d-------Dl~LE~Vi~~gtla~--d~~~A~lL~--~sgli~~Li~LL~~kqeDdE 593 (708)
T PF05804_consen 529 LQEYNLLPWLKDLLKPGAS----ED-------DLLLEVVILLGTLAS--DPECAPLLA--KSGLIPTLIELLNAKQEDDE 593 (708)
T ss_pred HHhCCHHHHHHHHhCCCCC----Ch-------HHHHHHHHHHHHHHC--CHHHHHHHH--hCChHHHHHHHHHhhCchHH
Confidence 64 567777776543211 11 122222333332222 111222221 02234444444444456788
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 002877 811 VTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMINRV 869 (872)
Q Consensus 811 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 869 (872)
+.--.+.++..+..+-..... -......+..++.. ++|.++.+|..|.-++..+++.
T Consensus 594 ~VlQil~~f~~ll~h~~tr~~-ll~~~~~~~ylidL-~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 594 IVLQILYVFYQLLFHEETREV-LLKETEIPAYLIDL-MHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHHHHHHHcChHHHHH-HHhccchHHHHHHH-hcCCCHHHHHHHHHHHHHHHHh
Confidence 888888888888776333211 11223456667765 9999999999999999999863
No 110
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.023 Score=63.13 Aligned_cols=165 Identities=10% Similarity=0.106 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 002877 190 HSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSN 269 (872)
Q Consensus 190 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~ 269 (872)
.+...|..|+|-+..-+... .++ ..+++-+.+.+...+.++++-...-|...++..|+. .--.++.+..
T Consensus 31 ~n~~~kidAmK~iIa~M~~G-~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~----~lLavNti~k 99 (757)
T COG5096 31 SNDYKKIDAMKKIIAQMSLG-EDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL----ALLAVNTIQK 99 (757)
T ss_pred cChHHHHHHHHHHHHHHhcC-CCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHh
Confidence 56788888888777654422 112 224444444444789999998888887777766632 1234677788
Q ss_pred HhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhh
Q 002877 270 AVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMA 349 (872)
Q Consensus 270 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~ 349 (872)
.++++++.+|..|+.+++.+-.. ..++.+++.+.+.+.+.. -.||+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~------------------------el~~~~~~~ik~~l~d~~---------ayVRk~ 146 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK------------------------ELLGNIIDPIKKLLTDPH---------AYVRKT 146 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH------------------------HHHHHHHHHHHHHccCCc---------HHHHHH
Confidence 88999999999999998877553 223445566666654322 579999
Q ss_pred HHHHHHHHHhhcCCcchhc-hHHHHHhhccCCCcchHHHHHHHHHHhhcC
Q 002877 350 GGTCLGLVARTVGDEVVPL-VMPFVEANIVKSDWRCREAATYAFGSVLEG 398 (872)
Q Consensus 350 a~~~l~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 398 (872)
|+-|+..+.+.-++.+... ........+.++++.+...|+.++..+-..
T Consensus 147 Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 147 AALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999987766665555 677778888899999999999888887654
No 111
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.16 E-value=0.00037 Score=68.27 Aligned_cols=247 Identities=17% Similarity=0.187 Sum_probs=166.0
Q ss_pred HHhhccCCCcchHHHHHHHHHHhhcCCCccchh-HhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 002877 373 VEANIVKSDWRCREAATYAFGSVLEGPTIDKLA-PLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVI 451 (872)
Q Consensus 373 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~-~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 451 (872)
+.+++.++++..|..|+.+|+.+.+...++.+. ..+.-++.+....+.|. +.+..+ +.++..+...-. .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~--------~ 73 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKN--------F 73 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcC--------C
Confidence 457788999999999999999998887544333 35667888888888543 334444 777777763322 2
Q ss_pred CcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHH
Q 002877 452 SPENLQRILTVLLESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAY 528 (872)
Q Consensus 452 ~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~ 528 (872)
.......++..+.+.... -...|..+...+..+.+.. ...+...-...+..++..+... .++.....++
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~------~~~l~~~~~~fv~~~i~~~~gE--kDPRnLl~~F 145 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH------REALQSMGDDFVYGFIQLIDGE--KDPRNLLLSF 145 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh------HHHHHhchhHHHHHHHHHhccC--CCHHHHHHHH
Confidence 334566777777765442 5677888888888888876 4555556667778888877632 3343466778
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchh--hhHHHHHHHHHHHHHHHHHHcCCCccchhhchhh
Q 002877 529 ETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDR--EKQGDLQASLCGVLQVIIQKFSSTDATKSFILQT 606 (872)
Q Consensus 529 ~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 606 (872)
+.+..+....+ ..++.+++++.+.-.+--.... ..+|+ ....+++.....++. .-..|
T Consensus 146 ~l~~~i~~~~~---~~~~~e~lFd~~~cYFPI~F~p---p~~dp~~IT~edLk~~L~~cl~--------------s~~~f 205 (262)
T PF14500_consen 146 KLLKVILQEFD---ISEFAEDLFDVFSCYFPITFRP---PPNDPYGITREDLKRALRNCLS--------------STPLF 205 (262)
T ss_pred HHHHHHHHhcc---cchhHHHHHHHhhheeeeeeeC---CCCCCCCCCHHHHHHHHHHHhc--------------CcHhh
Confidence 88887777765 2455555555554443322111 11221 234455544444442 12235
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh-HHHhhhHHHHHHHHh
Q 002877 607 ADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP-EFAKYMPEFYQYLQM 657 (872)
Q Consensus 607 ~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~ 657 (872)
.+..++.+++-|.++...++..++.++...+...|. .+.+|+..++..|..
T Consensus 206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999988875 678899999888753
No 112
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.017 Score=63.20 Aligned_cols=384 Identities=14% Similarity=0.126 Sum_probs=207.5
Q ss_pred HHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHH
Q 002877 408 VHAGFDFLLNAMRDE-NNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYL 484 (872)
Q Consensus 408 l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l 484 (872)
++.++|.|+..|+++ ++.+...||+++..+++.++... ..-.-...+|.|+..|.. .-.|.+.+..++..+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i 282 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKI 282 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh------heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 668999999999875 58899999999999999998721 111223477777777765 678899999999988
Q ss_pred HHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhh
Q 002877 485 AQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLEL 564 (872)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 564 (872)
.+... ...+..-.-..+=..+..+. ..+++.|+.....+.+.+. .+-..++-+.+|.+...|...
T Consensus 283 SR~H~-----~AiL~AG~l~a~LsylDFFS------i~aQR~AlaiaaN~Cksi~-sd~f~~v~ealPlL~~lLs~~--- 347 (1051)
T KOG0168|consen 283 SRRHP-----KAILQAGALSAVLSYLDFFS------IHAQRVALAIAANCCKSIR-SDEFHFVMEALPLLTPLLSYQ--- 347 (1051)
T ss_pred Hhhcc-----HHHHhcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHhhc---
Confidence 87642 11121111111222233332 3457788888888888888 666677888889888887743
Q ss_pred hhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhh-HHHHHHHHHHHHccC----ChhHHHHHHHHHHHHHHH
Q 002877 565 QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQT-ADQIMVLFLRVFACR----SSTVHEEAMLAIGALAYA 639 (872)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~----~~~v~~~a~~~l~~l~~~ 639 (872)
.......+|.++..++..+...+. .+... -..+++.+.+++.-. +..+....+..+..++..
T Consensus 348 ----------D~k~ies~~ic~~ri~d~f~h~~~---kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 348 ----------DKKPIESVCICLTRIADGFQHGPD---KLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG 414 (1051)
T ss_pred ----------cchhHHHHHHHHHHHHHhcccChH---HHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC
Confidence 122446778888888877765311 22222 235666666666554 234445555556666555
Q ss_pred hhhHHHhhh-HHHHHHHHhhhcccc---hH-------hHHHHHHHHHHHHHHHhc----C------------------Cc
Q 002877 640 TGPEFAKYM-PEFYQYLQMGLQNSE---EY-------QVCAITVGVVGDVCRALD----D------------------KV 686 (872)
Q Consensus 640 ~~~~~~~~l-~~i~~~l~~~l~~~~---~~-------~v~~~a~~~l~~l~~~~~----~------------------~~ 686 (872)
++..|.-.+ .+|...+...+.... +. ..-...+.....++.-++ + ++
T Consensus 415 ~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~ 494 (1051)
T KOG0168|consen 415 SPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADEL 494 (1051)
T ss_pred ChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccc
Confidence 554444322 344444444443211 00 000112222222221111 0 00
Q ss_pred -----------cccHHHHHHHHHHHhcCC-CCCCCC-chhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCC
Q 002877 687 -----------LPFCDGIMSLLLNALSNS-QLNRSV-KPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDME 753 (872)
Q Consensus 687 -----------~~~~~~i~~~l~~~l~~~-~~~~~~-~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~ 753 (872)
.+| ..+...++.-.+.+ ...+.+ +.....+=..+...-++-+..|...++|+|.+......++
T Consensus 495 ~~~~~d~~~s~~~~-~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~--- 570 (1051)
T KOG0168|consen 495 LWQWRDDRGSWHTY-TNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANP--- 570 (1051)
T ss_pred cccCcccccccccc-chhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCc---
Confidence 011 11111111111111 000000 0011111112222234557788999999999987765543
Q ss_pred chHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhH--HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchh
Q 002877 754 DEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYA--QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTK 831 (872)
Q Consensus 754 d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 831 (872)
.+|..++.++..++-.... +.+...+ ..+-..+.-.++. .+..+..-|+.+..-|++.++.-+.
T Consensus 571 ---------~VR~kcL~Ailrlvy~s~s---eli~slLk~~~vSS~lAG~lss--kD~~vlVgALQvAEiLmeKlpd~F~ 636 (1051)
T KOG0168|consen 571 ---------DVRYKCLSAILRLVYFSNS---ELIGSLLKNTNVSSHLAGMLSS--KDLTVLVGALQVAEILMEKLPDTFS 636 (1051)
T ss_pred ---------hhhHHHHHHHHHHHhhCCH---HHHHHHHhcchHHHHHHhhhhc--CCCeeEeehHHHHHHHHHHhHHHhh
Confidence 5777777776665544321 1122222 1122333333443 3456666778888888888887666
Q ss_pred hhccCchHHHHH
Q 002877 832 LLFKDSSFCNDF 843 (872)
Q Consensus 832 ~~~~~~~~v~~l 843 (872)
..|..++.+..+
T Consensus 637 ~~F~REGV~~~v 648 (1051)
T KOG0168|consen 637 PSFRREGVFHAV 648 (1051)
T ss_pred hhHhhhhHHHHH
Confidence 556655554444
No 113
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.01 E-value=0.00064 Score=68.79 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=128.5
Q ss_pred CcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHH
Q 002877 452 SPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYE 529 (872)
Q Consensus 452 ~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~ 529 (872)
..+++.+++..+++-+.| ++..+.-|...|..+|+.- +..+..+....+..++.+....+ +..++.++-.
T Consensus 323 Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q------~~~l~DstE~ai~K~Leaa~ds~--~~v~~~Aeed 394 (516)
T KOG2956|consen 323 WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ------PARLFDSTEIAICKVLEAAKDSQ--DEVMRVAEED 394 (516)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc------hHhhhchHHHHHHHHHHHHhCCc--hhHHHHHHHH
Confidence 457888999999999998 7888899999999999886 77888888888888888877333 3445777777
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHH
Q 002877 530 TLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQ 609 (872)
Q Consensus 530 al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 609 (872)
|+..+....| ..+.. .+-|.++ +++++ .-..++..+..+++.+..+ .+.+.++.
T Consensus 395 ~~~~las~~P-~~~I~---~i~~~Il------------t~D~~-----~~~~~iKm~Tkl~e~l~~E-----eL~~ll~d 448 (516)
T KOG2956|consen 395 CLTTLASHLP-LQCIV---NISPLIL------------TADEP-----RAVAVIKMLTKLFERLSAE-----ELLNLLPD 448 (516)
T ss_pred HHHHHHhhCc-hhHHH---HHhhHHh------------cCcch-----HHHHHHHHHHHHHhhcCHH-----HHHHhhhh
Confidence 7778888877 33222 2222222 12222 2235567888888888876 78888999
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHHHHHhh-hHHHhhhHHHHH
Q 002877 610 IMVLFLRVFACRSSTVHEEAMLAIGALAYATG-PEFAKYMPEFYQ 653 (872)
Q Consensus 610 l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~~i~~ 653 (872)
+.+.+++..++.++.||..++-+|-.+....| +.+.||+.++-.
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 99999999999999999999999999999999 888998876543
No 114
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0011 Score=72.16 Aligned_cols=233 Identities=15% Similarity=0.151 Sum_probs=165.4
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
+.+...+..+.|+.+.+|.++...+..+.+.-.. .....-..++...+..+.| ++-|-.+|...+..+|+.+
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~-------~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy 799 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKK-------ATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY 799 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcch-------hhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc
Confidence 3456667778899999999999999999874432 2334567889999999998 8999999999999999886
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHhhccCCCcc-hhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhc
Q 002877 489 EDAGPSSSLLSPYLTSIIAELLRAADRTDVGG-SKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIV 567 (872)
Q Consensus 489 ~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~-~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 567 (872)
+ ..|+|.+...-.+..... .+.|...=+++..++...| +-+..|.+.++..++....
T Consensus 800 ------~-------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvr-------- 857 (982)
T KOG4653|consen 800 ------P-------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVR-------- 857 (982)
T ss_pred ------c-------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcC--------
Confidence 3 334444444222111111 2225555699999999999 8888888876666665433
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhhHHHh
Q 002877 568 SSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR-SSTVHEEAMLAIGALAYATGPEFAK 646 (872)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~ 646 (872)
++....|...+..++.+++.... .+..++.+++..++...... ...+|++|...+..+....|....|
T Consensus 858 -----epd~~~RaSS~a~lg~Lcq~~a~------~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 858 -----EPDHEFRASSLANLGQLCQLLAF------QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred -----CchHHHHHhHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 23455788889999999887766 55557778888887777554 6789999999999999988877777
Q ss_pred hh----HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHh
Q 002877 647 YM----PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 647 ~l----~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 682 (872)
++ -+....+.....+.++..++..|+.++..+-...
T Consensus 927 ilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 927 ILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 44 3444445555555555557888888877765444
No 115
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.0069 Score=58.36 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=153.1
Q ss_pred HHHHHHHHHhhc-CCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhH---H-hHHHHHHHhcCCCcH
Q 002877 350 GGTCLGLVARTV-GDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLV---H-AGFDFLLNAMRDENN 424 (872)
Q Consensus 350 a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l---~-~l~~~l~~~l~d~~~ 424 (872)
+..||.++.+.. |..+.|.++|.++..+..++-.++--++..++.+.+.+....+...+ . .+++.++.+...++-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 677888888764 68899999999999999988889999999999999988534444432 2 788999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHH-hhc-----------ChHHHHHHHHHHHHHHHhhccCC
Q 002877 425 HVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLES-IKD-----------APNVAEKVCGAIYYLAQGYEDAG 492 (872)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-l~d-----------~~~v~~~a~~al~~l~~~~~~~~ 492 (872)
.|..+|...+.+++.+-. -+.++++. +.| +.-+|.+....+..+..-.
T Consensus 143 eVAkAAiesikrialfpa----------------aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS---- 202 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPA----------------ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS---- 202 (524)
T ss_pred HHHHHHHHHHHHHHhcHH----------------HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC----
Confidence 999999999999874322 22222211 111 3344445444444443321
Q ss_pred CCCCCchh-hHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH--HHHHHHHHHHHHHHhhhhcCc
Q 002877 493 PSSSLLSP-YLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA--ELLPAIMGRLGQTLELQIVSS 569 (872)
Q Consensus 493 ~~~~~l~~-~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~ 569 (872)
+..... --..++..+...+.. .++.-|+..+++....+..... -.+|+. .+++.+.+++..
T Consensus 203 --pesaneckkSGLldlLeaElkG--teDtLVianciElvteLaeteH---greflaQeglIdlicnIIsG--------- 266 (524)
T KOG4413|consen 203 --PESANECKKSGLLDLLEAELKG--TEDTLVIANCIELVTELAETEH---GREFLAQEGLIDLICNIISG--------- 266 (524)
T ss_pred --HHHHhHhhhhhHHHHHHHHhcC--CcceeehhhHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHhhC---------
Confidence 211111 124566677666653 2345567788888888776432 223333 244444444332
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHcCCC---ccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHh
Q 002877 570 DDREKQGDLQASLCGVLQVIIQKFSST---DATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYAT 640 (872)
Q Consensus 570 ~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 640 (872)
.|.+.+..+| ++-.+.+-+|++ +++...+..-+...++..++.+...++...+.|+.++|.+..+.
T Consensus 267 adsdPfekfr-----almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 267 ADSDPFEKFR-----ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred CCCCcHHHHH-----HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 1223333332 222333333332 01111333334556667777777778999999999999986654
No 116
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.99 E-value=0.00037 Score=73.69 Aligned_cols=237 Identities=12% Similarity=0.132 Sum_probs=154.4
Q ss_pred hhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhh----cccchHhHHHHHHHHH
Q 002877 600 KSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGL----QNSEEYQVCAITVGVV 675 (872)
Q Consensus 600 ~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l----~~~~~~~v~~~a~~~l 675 (872)
+..+.|++.+++..|+..+......--+..+.++-++....++.+.|+...+++.|...+ ++..++..-...++++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 347889999999999999987654445666888888888888888888777777665554 4555677888889999
Q ss_pred HHHHHHhcC----CccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHhcccc
Q 002877 676 GDVCRALDD----KVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG-VHFEKYVPHALQMMQEAAKACAQL 750 (872)
Q Consensus 676 ~~l~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~~~~~~~~ 750 (872)
+.+++...+ .+..+-+.++|.+..+|+.+ -.+.-+.++..++.+....+ +.+.+.+..++|.++.-.-+
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d--V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW---- 170 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQD--VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW---- 170 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT---TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG----
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh----
Confidence 999887542 23456678889999999877 67788888999998888766 45555666666777653221
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhh--hhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCc
Q 002877 751 DMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVM--MPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGP 828 (872)
Q Consensus 751 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 828 (872)
+ +...+-++..++.+.-+..+..+ .+++..++....++++.+. ++ ..++.++..++.+++.
T Consensus 171 ------------e-~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~-~D---~~gF~LL~~iv~~~p~ 233 (435)
T PF03378_consen 171 ------------E-RRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA-ND---HYGFDLLESIVENLPP 233 (435)
T ss_dssp ------------G-STTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT-CH---HHHHHHHHHHHHHS-H
T ss_pred ------------c-cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC-cc---hHHHHHHHHHHHHCCH
Confidence 1 12223444445554433222222 2667888888888887654 33 3589999999999999
Q ss_pred chhhhccCchHHHHHHHHHhcCCcHHHHHHHH
Q 002877 829 NTKLLFKDSSFCNDFMSECLRSDDEQLKETAG 860 (872)
Q Consensus 829 ~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~ 860 (872)
..+..++ .+++.-++.+..++.+++.+..-.
T Consensus 234 ~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv 264 (435)
T PF03378_consen 234 EALEPYL-KQIFTLLLTRLQSSKTEKFVKRFV 264 (435)
T ss_dssp HHHGGGH-HHHHHHHHHHHHHC--HHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHH
Confidence 7665544 557777777755577777765444
No 117
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.99 E-value=0.00065 Score=68.76 Aligned_cols=207 Identities=14% Similarity=0.150 Sum_probs=140.9
Q ss_pred hHHHHHhhccCCCcchHHHHHHHHHH-hhcCCCccchhHhHHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhccCCCC
Q 002877 369 VMPFVEANIVKSDWRCREAATYAFGS-VLEGPTIDKLAPLVHAGFDFLLNAMRD-ENNHVKDTTAWTLSRIFELLHCPAT 446 (872)
Q Consensus 369 l~~~l~~~l~~~~~~~r~aal~~l~~-i~~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (872)
+...+.+.-.++....|+.|+.-+-. ++++- ...-.++..+++-.+++.|.| .++..+.-|++.|+.++..-+.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~s-fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--- 363 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGS-FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--- 363 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---
Confidence 34444444445556778888874444 44443 233456788999999999999 8899999999999999987775
Q ss_pred CccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHH-HHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHH
Q 002877 447 GFSVISPENLQRILTVLLESIKD-APNVAEKVCGA-IYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLR 524 (872)
Q Consensus 447 ~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~a-l~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr 524 (872)
...++.+-.+..++..-.| ++.|...|... +..++... | ...+..|.+.++. .| +.. -
T Consensus 364 ----~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~------P---~~~I~~i~~~Ilt----~D-~~~--~ 423 (516)
T KOG2956|consen 364 ----RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL------P---LQCIVNISPLILT----AD-EPR--A 423 (516)
T ss_pred ----hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC------c---hhHHHHHhhHHhc----Cc-chH--H
Confidence 4445666667777776667 55554444444 33343332 1 2234455555544 23 222 5
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhch
Q 002877 525 SAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFIL 604 (872)
Q Consensus 525 ~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 604 (872)
..++..+..++.....++....+..++|.+++..... ...+|..+..+|..+++.+|.+ .+.
T Consensus 424 ~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-------------SS~VRKtaVfCLVamv~~vG~~-----~me 485 (516)
T KOG2956|consen 424 VAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-------------SSTVRKTAVFCLVAMVNRVGME-----EME 485 (516)
T ss_pred HHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-------------hHHhhhhHHHhHHHHHHHHhHH-----hhh
Confidence 5778889999988885667788888888888876643 3568899999999999999954 899
Q ss_pred hhHHHHHHHHHHH
Q 002877 605 QTADQIMVLFLRV 617 (872)
Q Consensus 605 ~~~~~l~~~l~~~ 617 (872)
||+.++-..-+.+
T Consensus 486 PhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 486 PHLEQLTSSKLNL 498 (516)
T ss_pred hHhhhccHHHHHH
Confidence 9987655443333
No 118
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.95 E-value=0.027 Score=69.65 Aligned_cols=326 Identities=10% Similarity=0.032 Sum_probs=192.8
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccC-CCcchhHHHHHHHHHHHHHhcCC-CcccH--HHHHHHHHH
Q 002877 478 CGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRT-DVGGSKLRSAAYETLNEVVRCSN-ITETS--QIIAELLPA 553 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~-~~~~~~vr~~a~~al~~l~~~~~-~~~~~--~~~~~l~~~ 553 (872)
..++..+++-+... .+.+.-.+..+...+...+... ...+..++..|++.|..+....- .++.. .+-+.++.+
T Consensus 1110 ~FsLqKLveIa~~N---m~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkP 1186 (1780)
T PLN03076 1110 VFSLTKIVEIAHYN---MNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKP 1186 (1780)
T ss_pred hhHHHHHHHHHHhc---ccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHH
Confidence 44555555543210 2223334455555555544431 22345567788887777665332 12221 223456777
Q ss_pred HHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHH
Q 002877 554 IMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAI 633 (872)
Q Consensus 554 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l 633 (872)
+...+... ...+++..++.++..++...+. .+..-=..++..+-....+....+.+.|+..+
T Consensus 1187 fe~im~~s------------~~~eVrE~ILeCv~qmI~s~~~------nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl 1248 (1780)
T PLN03076 1187 FVIVMRKS------------NAVEIRELIIRCVSQMVLSRVN------NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEII 1248 (1780)
T ss_pred HHHHHHhc------------CchHHHHHHHHHHHHHHHHHHh------hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 76666532 2346788889999988887776 45444456777776666666778888888888
Q ss_pred HHHHHHhhhHHH----hhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC-------------------------
Q 002877 634 GALAYATGPEFA----KYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD------------------------- 684 (872)
Q Consensus 634 ~~l~~~~~~~~~----~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~------------------------- 684 (872)
..+....-..+. ..+..++..+.....+..+.++...|+..+..++..+-+
T Consensus 1249 ~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~ 1328 (1780)
T PLN03076 1249 EKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDG 1328 (1780)
T ss_pred HHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 777543222111 345566666666665544455666777777655333300
Q ss_pred -----------CccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhh-h----HHHHHHHHHHHHHhcc
Q 002877 685 -----------KVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEK-Y----VPHALQMMQEAAKACA 748 (872)
Q Consensus 685 -----------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~----l~~i~~~l~~~~~~~~ 748 (872)
....++-.++..|.++..++ ..+||..|+..|=++...+|..|.+ + +..++-+++..++...
T Consensus 1329 ~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~--RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~ 1406 (1780)
T PLN03076 1329 KQESGEFTDKDDHLYFWFPLLAGLSELSFDP--RPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAI 1406 (1780)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00123344555555555544 7889999999999999999988875 2 3444445555555432
Q ss_pred ccCCC----------chHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 002877 749 QLDME----------DEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAV 818 (872)
Q Consensus 749 ~~~~~----------d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~ 818 (872)
+.... +.+..+...=+.+++..++.+++.-+.... +.+.+.++.++..+..+... .++.+.+.+..|
T Consensus 1407 ~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fF-d~L~~~L~~~l~ll~~ci~q--~n~~la~ig~~~ 1483 (1780)
T PLN03076 1407 DPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFY-PTVNPLLKKVLMLLVSFIKR--PHQSLAGIGIAA 1483 (1780)
T ss_pred ccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHH
Confidence 11000 000011111235666666666666554432 34566778888888877654 689999999999
Q ss_pred HHHHHhhhCcc
Q 002877 819 MGDLADALGPN 829 (872)
Q Consensus 819 l~~l~~~~~~~ 829 (872)
+..++...|..
T Consensus 1484 l~~li~~ng~~ 1494 (1780)
T PLN03076 1484 FVRLMSNAGHL 1494 (1780)
T ss_pred HHHHHHHhhcc
Confidence 99999999987
No 119
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=97.87 E-value=0.0038 Score=66.25 Aligned_cols=263 Identities=11% Similarity=0.106 Sum_probs=152.7
Q ss_pred CCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHH
Q 002877 379 KSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQ 457 (872)
Q Consensus 379 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (872)
+++|..-......+..+......+..+.++. ..+..++..+..++++-|......+.++...... ...++-
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~--------~r~~Ir 172 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN--------LRSFIR 172 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT--------THHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh--------hHHHHH
Confidence 4568877777777777776543223344555 7888899999999999999999999997766653 233333
Q ss_pred H-HHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchh-hHHHHHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002877 458 R-ILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSP-YLTSIIAELLRAADRTDVGGSKLRSAAYETLNE 533 (872)
Q Consensus 458 ~-~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~-~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~ 533 (872)
+ +-..+...+.+ .+.-.......++.+..++ ...+.+ +..-+...++....... -.........++..
T Consensus 173 ~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf------~~plk~eh~~fl~~vllPLh~~~~--~~~y~~~L~~~~~~ 244 (409)
T PF01603_consen 173 KSINNIFYRFIYETERHNGIAELLEILGSIINGF------AVPLKEEHKQFLRKVLLPLHKSPH--LSSYHQQLSYCVVQ 244 (409)
T ss_dssp HHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--------SS--HHHHHHHHHTTGGGGGSTG--GGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc------CCCCcHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHH
Confidence 3 33333334443 3333355677788888776 333333 33333344444444221 12224566666777
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHH
Q 002877 534 VVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVL 613 (872)
Q Consensus 534 l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 613 (872)
++...+ .+...++..++..|-.+. ..-+...+.-+..++..+++. .+......++..
T Consensus 245 f~~kdp-----~l~~~~i~~llk~WP~t~-------------s~Kev~FL~el~~il~~~~~~-----~f~~i~~~lf~~ 301 (409)
T PF01603_consen 245 FLEKDP-----SLAEPVIKGLLKHWPKTN-------------SQKEVLFLNELEEILEVLPPE-----EFQKIMVPLFKR 301 (409)
T ss_dssp HHHH-G-----GGHHHHHHHHHHHS-SS--------------HHHHHHHHHHHHHHHTT--HH-----HHHHHHHHHHHH
T ss_pred HHHhCc-----hhHHHHHHHHHHhCCCCC-------------chhHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHH
Confidence 766655 233444455555554321 111123345555666555543 677788899999
Q ss_pred HHHHHccCChhHHHHHHHHHHH--HHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHH
Q 002877 614 FLRVFACRSSTVHEEAMLAIGA--LAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 614 l~~~l~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 680 (872)
+..++.+.+..|.+.|+..+.+ +.......-...++.++|.+.+..+++.+..++..|..++..+..
T Consensus 302 la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 302 LAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999988743 344333333344555666665555555566788888888776644
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0022 Score=69.89 Aligned_cols=199 Identities=12% Similarity=0.116 Sum_probs=148.4
Q ss_pred HHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcC
Q 002877 460 LTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCS 538 (872)
Q Consensus 460 l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~ 538 (872)
+...+..+.| .+.+|..+...+..+++.- ...-..+...++...+..+.. +++-+-..+...+..++...
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r------~~~~~~~~ekvl~i~ld~Lkd---edsyvyLnaI~gv~~Lcevy 799 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR------KKATLIQGEKVLAIALDTLKD---EDSYVYLNAIRGVVSLCEVY 799 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc------chhhhhhHHHHHHHHHHHhcc---cCceeeHHHHHHHHHHHHhc
Confidence 4445556666 7888999999999998854 122223456778888888873 33555667777777777766
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHH
Q 002877 539 NITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF 618 (872)
Q Consensus 539 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 618 (872)
+ +.++|.+.+...+.-+. ...+.+..+.+++..+++..|+ .+..|...+++.++...
T Consensus 800 ~--------e~il~dL~e~Y~s~k~k---------~~~d~~lkVGEai~k~~qa~Ge------l~~~y~~~Li~tfl~gv 856 (982)
T KOG4653|consen 800 P--------EDILPDLSEEYLSEKKK---------LQTDYRLKVGEAILKVAQALGE------LVFKYKAVLINTFLSGV 856 (982)
T ss_pred c--------hhhHHHHHHHHHhcccC---------CCccceehHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhc
Confidence 6 45666666544432111 1123345566899999999999 88899999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccH
Q 002877 619 ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFC 690 (872)
Q Consensus 619 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 690 (872)
++++...|-+++..+|.++....-....++.+++..+....+......+|.+|+..+..+-...|..+.|+.
T Consensus 857 repd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 857 REPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred CCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 988888899999999999988776667788888888888777766778999999999999999998777754
No 121
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.84 E-value=1.5e-05 Score=57.21 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHH
Q 002877 424 NHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYL 484 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l 484 (872)
|.||..|+++||+++...+. ...++.+.+++.|...+.| ++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~-------~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPE-------LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHH-------HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHH-------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 68999999999998766654 4567899999999999998 889999999999864
No 122
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.83 E-value=0.0059 Score=65.50 Aligned_cols=192 Identities=10% Similarity=0.098 Sum_probs=108.3
Q ss_pred CChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCch
Q 002877 51 KPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWP 130 (872)
Q Consensus 51 ~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~ 130 (872)
.+...+.+|++++.+..+. + |+..+.-.+.++.+..+++..||.++-..|..+++.. | ...+
T Consensus 34 g~~k~K~Laaq~I~kffk~------------F----P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~-~~v~ 95 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH------------F----PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-P-EHVS 95 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----------------GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HH
T ss_pred CCHHHHHHHHHHHHHHHhh------------C----hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-H-HHHh
Confidence 4689999999999877643 2 3334445567778888899999999999999999876 4 2558
Q ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH
Q 002877 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFAL 210 (872)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 210 (872)
.+...|.|+++++ ++..+..+-..|..+...-. ...+..++..+... .. .+..+|..+++.+..-+.-+.
T Consensus 96 kvaDvL~QlL~td--d~~E~~~v~~sL~~ll~~d~-----k~tL~~lf~~i~~~-~~--~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 96 KVADVLVQLLQTD--DPVELDAVKNSLMSLLKQDP-----KGTLTGLFSQIESS-KS--GDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp HHHHHHHHHTT-----HHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHH----H--S-HHHHHHHHHHHHHHGGGS-
T ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhc-cc--CchHHHHHHHHHHHHHHhhCc
Confidence 8999999999988 77766666666666555431 22333344333321 12 356899999998876554444
Q ss_pred hhhhh--hhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 002877 211 TNFQN--EMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNA 270 (872)
Q Consensus 211 ~~~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 270 (872)
.+.-. .....++...+...+++-..+-....+.+|..+--.-...-....+.+++++...
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQ 227 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQ 227 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHH
Confidence 33222 2223567777777777644444444444443331100011123445667666543
No 123
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.15 Score=60.70 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=100.2
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCC
Q 002877 228 ETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDS 307 (872)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 307 (872)
.-+.+++.++|..|...++.+...+...+..-.+.++...+..+.|...++|+.++++...+.-..+.
T Consensus 266 ~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~------------ 333 (1266)
T KOG1525|consen 266 FELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS------------ 333 (1266)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch------------
Confidence 33568899999999999999998877766655667888888888999999999999877666443221
Q ss_pred CCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHH
Q 002877 308 DSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREA 387 (872)
Q Consensus 308 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~a 387 (872)
..+. .... ..+...+-|+++ .+|....-..-... .+.-.+.+.++.++.+.+.|..|++|.-
T Consensus 334 ------~~~~----~~~~--~~l~~~~~D~~~-----rir~~v~i~~~~v~-~~~l~~~~~ll~~~~eR~rDKk~~VR~~ 395 (1266)
T KOG1525|consen 334 ------IAKA----STIL--LALRERDLDEDV-----RVRTQVVIVACDVM-KFKLVYIPLLLKLVAERLRDKKIKVRKQ 395 (1266)
T ss_pred ------hhhH----HHHH--HHHHhhcCChhh-----hheeeEEEEEeehh-HhhhhhhHHHHHHHHHHHhhhhHHHHHH
Confidence 1111 1111 111222222211 11211000000000 1112233448888889999999999999
Q ss_pred HHHHHHHhhcC--C----CccchhHhHHhHHHHHHHhcCCCcHHHH
Q 002877 388 ATYAFGSVLEG--P----TIDKLAPLVHAGFDFLLNAMRDENNHVK 427 (872)
Q Consensus 388 al~~l~~i~~~--~----~~~~~~~~l~~l~~~l~~~l~d~~~~vr 427 (872)
|+..|..+... + +.+...+.+..+-..++..+...+...|
T Consensus 396 Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 396 AMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 99999887663 1 1123334444444556666654444444
No 124
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.80 E-value=0.22 Score=61.98 Aligned_cols=301 Identities=11% Similarity=0.104 Sum_probs=176.0
Q ss_pred chhhhHHHHHHHHHhhcC--Ccc-----hh-chHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHH
Q 002877 345 NISMAGGTCLGLVARTVG--DEV-----VP-LVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLL 416 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~~--~~~-----~~-~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~ 416 (872)
.++.-|.+.|..++..+- +++ -. .+-|+..-.-++.+..+|+..+.|+..+..... ..++.==+.++..+.
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-~nIkSGWktIF~VLs 1230 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-NNVKSGWKSMFMVFT 1230 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhcCcHHHHHHHH
Confidence 366777777778777653 121 11 223332222234567899999999999887653 333332334445555
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhh-ccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccC--
Q 002877 417 NAMRDENNHVKDTTAWTLSRIFEL-LHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDA-- 491 (872)
Q Consensus 417 ~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~-- 491 (872)
....++++.+...|..++..+... +... +......+..++..+...... +.++...|...|..++......
T Consensus 1231 ~aa~d~~e~iV~lAFetl~~I~~d~f~~l----~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1231 TAAYDDHKNIVLLAFEIIEKIIREYFPYI----TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHhhhhhc----cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 555688999999999998877643 2210 001124455555555544432 4666667777666554333100
Q ss_pred ------C-----------------C-----CCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCccc
Q 002877 492 ------G-----------------P-----SSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITET 543 (872)
Q Consensus 492 ------~-----------------~-----~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~ 543 (872)
. . ..+....++-.++..+..... + +...||..|+..|-.+....| ..+
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~--D-~RlEVR~~ALqtLF~iL~~yG-~~F 1382 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF--D-PRPEIRKSALQVLFDTLRNHG-HLF 1382 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHHHHhh-ccC
Confidence 0 0 001112345566666666655 3 456789999999999998888 665
Q ss_pred HH-----HHHHHHHHHHHHHHHHHhhhhcC----------c--chhh-hHHHHHHHHHHHHHHHHHHcCCCccchhhchh
Q 002877 544 SQ-----IIAELLPAIMGRLGQTLELQIVS----------S--DDRE-KQGDLQASLCGVLQVIIQKFSSTDATKSFILQ 605 (872)
Q Consensus 544 ~~-----~~~~l~~~l~~~l~~~~~~~~~~----------~--~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 605 (872)
.+ .+..++.++++.+.......... . .+.. +..+....++..+..+...+=+ .+.+
T Consensus 1383 s~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd------~L~~ 1456 (1780)
T PLN03076 1383 SLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYP------TVNP 1456 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 43 45667777777665443221100 0 0111 1123334444444444444444 5666
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHh-hhHHHHHHHHhhhc
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAK-YMPEFYQYLQMGLQ 660 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~ 660 (872)
.++.++..+..++..++..+...+..++..++...|..|.+ ....++..+.+...
T Consensus 1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 78889999999999888888888999999998888876643 55555555554443
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.79 E-value=0.00023 Score=57.42 Aligned_cols=84 Identities=23% Similarity=0.293 Sum_probs=66.2
Q ss_pred HHHHhhc-cCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcc
Q 002877 371 PFVEANI-VKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFS 449 (872)
Q Consensus 371 ~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
+.+.+.+ ++++|.+|..++.+++.+. -+..++.+.+.++|+++.||.+|+++++++..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD---------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 4555555 7889999999999999331 23678899999999999999999999998741
Q ss_pred ccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHH
Q 002877 450 VISPENLQRILTVLLESIKD--APNVAEKVCGAIY 482 (872)
Q Consensus 450 ~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~ 482 (872)
+..++.|.+.+.+ +..||..|..+|+
T Consensus 61 -------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4567777887776 6678998888874
No 126
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.087 Score=56.66 Aligned_cols=323 Identities=11% Similarity=0.094 Sum_probs=173.7
Q ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 002877 133 IRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTN 212 (872)
Q Consensus 133 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 212 (872)
+..+..-+.+. ++...--|+.|++.+-..- ....+.+-+-+.|.+++...-||..|.-||..+....++-
T Consensus 113 in~iknDL~sr--n~~fv~LAL~~I~niG~re--------~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 113 INSIKNDLSSR--NPTFVCLALHCIANIGSRE--------MAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred HHHHHhhhhcC--CcHHHHHHHHHHHhhccHh--------HHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 34445555566 7777788888888766542 2222333334555555456789999999988876543332
Q ss_pred hhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHH----HHHHHHHHhcC---------CChHHH
Q 002877 213 FQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQT----LFELTSNAVKG---------DEEAVA 279 (872)
Q Consensus 213 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~----l~~~~~~~~~~---------~~~~~~ 279 (872)
+.. ....+-+..++.+.+-.+..++...+..++...++.....+.. +-..+...-.+ +.+=+.
T Consensus 183 ~~~----~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 183 VNP----GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred cCh----hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 222 1244555666666666666677777777777666555433332 11111111111 112122
Q ss_pred HHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchh-hhHHHHHHHHH
Q 002877 280 LQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNIS-MAGGTCLGLVA 358 (872)
Q Consensus 280 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r-~~a~~~l~~l~ 358 (872)
...+..+..+ . . +++. -.+.-+..++..++....+.....+ -...+.. ....+++....
T Consensus 259 vKl~rlLq~~-p--~-------~~D~--------~~r~~l~evl~~iLnk~~~~~~~k~--vq~~na~naVLFeaI~l~~ 318 (938)
T KOG1077|consen 259 VKLLRLLQIY-P--T-------PEDP--------STRARLNEVLERILNKAQEPPKSKK--VQHSNAKNAVLFEAISLAI 318 (938)
T ss_pred HHHHHHHHhC-C--C-------CCCc--------hHHHHHHHHHHHHHhccccCccccc--hHhhhhHHHHHHHHHHHHH
Confidence 2222222211 0 0 0000 0111111222222222211110000 0000111 11123333222
Q ss_pred hhcC-CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC-CCcHHHHHHHHHHHHH
Q 002877 359 RTVG-DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR-DENNHVKDTTAWTLSR 436 (872)
Q Consensus 359 ~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~ 436 (872)
..-+ .+++...+..+-+++++.+...|+-++-.+..++..- .....++.-...++..|+ +.+..+|+.|...|-.
T Consensus 319 h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~---~s~davK~h~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 319 HLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE---FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred HcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc---chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2222 3344455566677778888889998887777776542 111223333566677777 8899999999999988
Q ss_pred HHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHH
Q 002877 437 IFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLR 511 (872)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~ 511 (872)
+++.- ....++..+++-+.. ++.+|+.-..-..-+++.+ ..+...|...+++.+--
T Consensus 396 mcD~~-------------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKy------AtDy~WyVdviLqLiri 452 (938)
T KOG1077|consen 396 MCDVS-------------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKY------ATDYSWYVDVILQLIRI 452 (938)
T ss_pred Hhchh-------------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh------cCCcchhHHHHHHHHHH
Confidence 87533 456777778777776 8888887766677788888 67778888877775543
No 127
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.78 E-value=0.0018 Score=60.01 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=82.3
Q ss_pred CcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHH
Q 002877 381 DWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRIL 460 (872)
Q Consensus 381 ~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 460 (872)
++..|-.++.++|.++.... . .++..+|.+...|.|++|.||..|+.++..+...- .-..-..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d----------~ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-N----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED----------MIKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-H----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC----------ceeehhhhh
Confidence 46788999999999886552 3 45567788899999999999999999999987421 223345666
Q ss_pred HHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHH
Q 002877 461 TVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELL 510 (872)
Q Consensus 461 ~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~ 510 (872)
..++..+.| ++.||..|..+|..+..... ++.+...++.++..+.
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~-----~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRN-----PNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHh
Confidence 777888888 99999999999999987732 5555555554444443
No 128
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.77 E-value=5.7e-05 Score=65.46 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=82.4
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHH-HHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQ-RILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
.+++.+++.+.+.++.+|..++++++.++...+. ....... .+++.+.+.+.+ +++++..+++++++++..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-------~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNND-------NIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH-------HHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 4778888999999999999999999999876433 1223333 678888888888 999999999999999876
Q ss_pred hccCCCCCCCchhhH-HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 002877 488 YEDAGPSSSLLSPYL-TSIIAELLRAADRTDVGGSKLRSAAYETLNEVV 535 (872)
Q Consensus 488 ~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~ 535 (872)
. +.....+. .++++.+...+... +..++..+..++..++
T Consensus 80 ~------~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 P------EDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLA 119 (120)
T ss_pred c------HHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhh
Confidence 3 22222222 34788888888743 3567888888888765
No 129
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.76 E-value=0.0021 Score=62.51 Aligned_cols=220 Identities=12% Similarity=0.144 Sum_probs=134.5
Q ss_pred HHhhcc-CCCcchHHHHHHHHHHhhcCCCccchhHhHH--hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcc
Q 002877 373 VEANIV-KSDWRCREAATYAFGSVLEGPTIDKLAPLVH--AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFS 449 (872)
Q Consensus 373 l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
+...+. +.++..++.++.+++..+.... ....+. ..++.+...+.++++.+|..|++++..++.....
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~---nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en------ 87 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPF---NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN------ 87 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChh---HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh------
Confidence 333334 4578899999999999765432 222333 6789999999999999999999999988765443
Q ss_pred ccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHH
Q 002877 450 VISPENLQRILTVLLESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSA 526 (872)
Q Consensus 450 ~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~ 526 (872)
...+...++.+.+.+.. +..++.++..+|.++.-. +.....+...++.++..+.+. +..+|..
T Consensus 88 ---~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--------~~~~~~l~~~i~~ll~LL~~G---~~~~k~~ 153 (254)
T PF04826_consen 88 ---QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--------NDYHHMLANYIPDLLSLLSSG---SEKTKVQ 153 (254)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--------cchhhhHHhhHHHHHHHHHcC---ChHHHHH
Confidence 23344445555543332 788999999999888532 222334445566666666633 3556888
Q ss_pred HHHHHHHHHhcCCCcccHHHHH-HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCc-------c
Q 002877 527 AYETLNEVVRCSNITETSQIIA-ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTD-------A 598 (872)
Q Consensus 527 a~~al~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------~ 598 (872)
++.+|..+...-. ...+.+. +..+.++..+.. ....++...++..+.++-+.++.+. .
T Consensus 154 vLk~L~nLS~np~--~~~~Ll~~q~~~~~~~Lf~~------------~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~ 219 (254)
T PF04826_consen 154 VLKVLVNLSENPD--MTRELLSAQVLSSFLSLFNS------------SESKENLLRVLTFFENINENIKKEAYVFVQDDF 219 (254)
T ss_pred HHHHHHHhccCHH--HHHHHHhccchhHHHHHHcc------------CCccHHHHHHHHHHHHHHHhhCcccceeccccC
Confidence 8888888876532 1222222 334444444442 1223445566777777777776541 0
Q ss_pred chhhchh---hHHHHHHHHHHHHccCChhHHHHH
Q 002877 599 TKSFILQ---TADQIMVLFLRVFACRSSTVHEEA 629 (872)
Q Consensus 599 ~~~~~~~---~~~~l~~~l~~~l~~~~~~v~~~a 629 (872)
+...+.. -...+-+.+.....+++++||+.+
T Consensus 220 ~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 220 SEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred CchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 1111111 123566777777777788887653
No 130
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.74 E-value=0.002 Score=59.71 Aligned_cols=133 Identities=13% Similarity=0.142 Sum_probs=97.8
Q ss_pred cHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 002877 146 LAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKV 225 (872)
Q Consensus 146 ~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~ 225 (872)
++.+|..++.+++.++... ...++..++.+...|+| +++.||..|+.+|..++. .++.+. +..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~------~~~ve~~~~~l~~~L~D--~~~~VR~~al~~Ls~Li~---~d~ik~--k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY------PNLVEPYLPNLYKCLRD--EDPLVRKTALLVLSHLIL---EDMIKV--KGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC------cHHHHhHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH---cCceee--hhhhhHH
Confidence 4678999999999999988 34566778888899999 789999999999999864 233221 2235455
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHHh-hhhhhHHhHHHHHHHHHHHhc-----CCChHHHHHHHHhHhHHhH
Q 002877 226 VCETAKSKEVEIRQAAFECLVSIAST-YYEVLEPYMQTLFELTSNAVK-----GDEEAVALQAVEFWSSICD 291 (872)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~al~~l~~l~~ 291 (872)
+..++.|+++++|..|..++..+... .+..+..++.+++..+-...+ ..+.+-+...+.|+....+
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 56677899999999999999999987 566666666655554433222 2355667777777777765
No 131
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.12 Score=57.28 Aligned_cols=238 Identities=13% Similarity=0.169 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHH-ccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHH
Q 002877 577 DLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF-ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYL 655 (872)
Q Consensus 577 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l 655 (872)
...+.++..+..++..+|. ...+.++.+++..-..= +..++..-..+...+|.++...+++ .-|++..+|.+
T Consensus 482 ~~tEaci~~~~sva~~~~~------t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~-P~~ln~sl~~L 554 (982)
T KOG2022|consen 482 NRTEACIFQFQSVAEYLGE------TESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH-PMYLNPSLPLL 554 (982)
T ss_pred HHHHHHHHHHHHHHhhcCc------chhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC-CcccCchHHHH
Confidence 3446677888888888888 45555555544333221 1125667778888899988877764 23777888888
Q ss_pred HhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc-cchhhhHH
Q 002877 656 QMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG-VHFEKYVP 734 (872)
Q Consensus 656 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~ 734 (872)
++.+.+++ ....++..+..+++..+.++.||.++++..+-..+.........+..++.++|.+..... +....|+.
T Consensus 555 ~~~Lh~sk---~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~ 631 (982)
T KOG2022|consen 555 FQGLHNSK---ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLM 631 (982)
T ss_pred HHHhcCch---HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHH
Confidence 88887543 446677779999999999999999999999999888765567788899999999988764 66678999
Q ss_pred HHHHHHHHHHHhccccCCCchHHHHHHHHHHHH-HHHHHHhHhhccchh----------hh------hhhhhhHHHHHHH
Q 002877 735 HALQMMQEAAKACAQLDMEDEELIDYGNQLRSS-IFEAYSGILQGFKSA----------RA------EVMMPYAQHLLQF 797 (872)
Q Consensus 735 ~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~l~~~----------~~------~~~~~~~~~il~~ 797 (872)
.++..++..++..-.++-++.+. .+|.. .+.++..+..++... .. ..+..+...+++.
T Consensus 632 ~lin~il~qle~~l~~~i~~~e~-----~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~ 706 (982)
T KOG2022|consen 632 KLINPILSQLEINLAPGIDDQEN-----HLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPV 706 (982)
T ss_pred HHHHHHHHHHHHhhcCCCCCHHH-----HHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHH
Confidence 99999999988764444334332 22221 124455555554321 00 0233345667777
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcc
Q 002877 798 IELIFKDNHRDENVTKAAVAVMGDLADALGPN 829 (872)
Q Consensus 798 l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 829 (872)
+.+.++.--.+.++..+++...+.=++..+++
T Consensus 707 ~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s 738 (982)
T KOG2022|consen 707 FEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS 738 (982)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHhcccccccc
Confidence 77765432234555555555544434444444
No 132
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.72 E-value=0.0021 Score=72.39 Aligned_cols=210 Identities=15% Similarity=0.205 Sum_probs=147.3
Q ss_pred CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhcc
Q 002877 363 DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 363 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
..+.+.+-+.+...+.|++|+.|..|+..+..+.+.........+...+...+--.+.|.|..|...++.+|..++..+.
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45566666777888889999999999998888877653123333444455555556789999999999999999999888
Q ss_pred CCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcch
Q 002877 443 CPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGS 521 (872)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~ 521 (872)
. ....|...+++.++..+.+ .+.++..+..++..++..+ .+..+.+.+...+.. .+.
T Consensus 328 ~-------~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------------~l~~~~~~I~e~lk~---knp 385 (815)
T KOG1820|consen 328 P-------LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------------PLSKMSEAILEALKG---KNP 385 (815)
T ss_pred h-------hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHhcC---CCh
Confidence 6 4677888999999999998 8888888888887777643 234555555555552 334
Q ss_pred hHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchh
Q 002877 522 KLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKS 601 (872)
Q Consensus 522 ~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 601 (872)
..+..+...++...+..+ +. .
T Consensus 386 ~~k~~~~~~l~r~~~~~~-------------------------------------------------------~~----~ 406 (815)
T KOG1820|consen 386 QIKGECLLLLDRKLRKLG-------------------------------------------------------PK----T 406 (815)
T ss_pred hhHHHHHHHHHHHHhhcC-------------------------------------------------------Cc----C
Confidence 445444444444443333 10 0
Q ss_pred hchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh-HHHhhhHHHHH
Q 002877 602 FILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP-EFAKYMPEFYQ 653 (872)
Q Consensus 602 ~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~l~~i~~ 653 (872)
........+.+.++...++.+..||..|+.+++.+....|+ .+..++..+-+
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 22334557778888888888999999999999999888886 44556665553
No 133
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.65 E-value=0.0013 Score=63.89 Aligned_cols=192 Identities=11% Similarity=0.167 Sum_probs=117.1
Q ss_pred hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHH--HHHHHHHHHhhc-ChHHHHHHHHHHHHHH
Q 002877 410 AGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQ--RILTVLLESIKD-APNVAEKVCGAIYYLA 485 (872)
Q Consensus 410 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
+-+..++..|+ ..+|.+++.+..+++..+.+... .+.+. ..++.+...+.+ ++.++..|+.++.+++
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n---------q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN---------QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH---------HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 34566677776 56899999999999997643322 22332 346666777777 9999999999999887
Q ss_pred HhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhh
Q 002877 486 QGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ 565 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 565 (872)
...+. ...+..|++.++..+... . -++.++..++.+|..+.-... ...
T Consensus 83 ~~~en----~~~Ik~~i~~Vc~~~~s~----~-lns~~Q~agLrlL~nLtv~~~---~~~-------------------- 130 (254)
T PF04826_consen 83 VNDEN----QEQIKMYIPQVCEETVSS----P-LNSEVQLAGLRLLTNLTVTND---YHH-------------------- 130 (254)
T ss_pred CChhh----HHHHHHHHHHHHHHHhcC----C-CCCHHHHHHHHHHHccCCCcc---hhh--------------------
Confidence 55421 333445555555544332 1 134456666666665532111 000
Q ss_pred hcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHH
Q 002877 566 IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFA 645 (872)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~ 645 (872)
.+. ..++.++.++...+..+|..++.++..++.... ...
T Consensus 131 ------------------------------------~l~----~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~-~~~ 169 (254)
T PF04826_consen 131 ------------------------------------MLA----NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD-MTR 169 (254)
T ss_pred ------------------------------------hHH----hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH-HHH
Confidence 111 234445556667777888888888888765322 111
Q ss_pred hhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 646 KYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 646 ~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
..+ .+.+..+...+...++.++...++.++..+....+
T Consensus 170 ~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 170 ELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 111 24555666666666667788889999999887775
No 134
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.60 E-value=0.1 Score=56.41 Aligned_cols=282 Identities=13% Similarity=0.156 Sum_probs=144.0
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCC
Q 002877 224 KVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPE 303 (872)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 303 (872)
..++.... .+...+.-+.+.+..+...+|+.-..-++.++.++ .|++..+|.+|+.-+..+|...
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLc----EDed~~iR~~aik~lp~~ck~~---------- 90 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLC----EDEDVQIRKQAIKGLPQLCKDN---------- 90 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHH----T-SSHHHHHHHHHHGGGG--T-----------
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH----hcccHHHHHHHHHhHHHHHHhH----------
Confidence 44455554 47888999999999888888877666555555544 7899999999999999998852
Q ss_pred CCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcc
Q 002877 304 TGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWR 383 (872)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 383 (872)
..+++.+..+|.+.|...+ .....+.-.+|..+...-+...+..++..+... .+.+-.
T Consensus 91 ------------~~~v~kvaDvL~QlL~tdd---------~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~ 148 (556)
T PF05918_consen 91 ------------PEHVSKVADVLVQLLQTDD---------PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQ 148 (556)
T ss_dssp -------------T-HHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HH
T ss_pred ------------HHHHhHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchH
Confidence 2344578888888876321 233455556676666666655555555555422 133456
Q ss_pred hHHHHHHHHHHhhcCCCccchh--HhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHH
Q 002877 384 CREAATYAFGSVLEGPTIDKLA--PLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRIL 460 (872)
Q Consensus 384 ~r~aal~~l~~i~~~~~~~~~~--~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 460 (872)
.|+-++..+..-......+.+. ..+. -++..+.+.|.|-...- ...+-.+...++- |+ ......-...++
T Consensus 149 ~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeE----F~l~m~lL~~lk~--~~-~~~t~~g~qeLv 221 (556)
T PF05918_consen 149 VRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEE----FELFMSLLKSLKI--YG-GKQTIEGRQELV 221 (556)
T ss_dssp HHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHH----HHHHHHHHHTSGG------GSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHhCcc--cc-ccCChHHHHHHH
Confidence 7888876665433332223333 2233 45566677777633222 2222233333221 00 001223445666
Q ss_pred HHHHHHhh-c------ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002877 461 TVLLESIK-D------APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNE 533 (872)
Q Consensus 461 ~~l~~~l~-d------~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~ 533 (872)
+.+..... + ++..-.+-..++..-..-+. .+..-.+++.-++..++..+...+ ...+...+.++..
T Consensus 222 ~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs----~~v~Sskfv~y~~~kvlP~l~~l~---e~~kl~lLk~lAE 294 (556)
T PF05918_consen 222 DIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS----RGVSSSKFVNYMCEKVLPKLSDLP---EDRKLDLLKLLAE 294 (556)
T ss_dssp HHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B----TTB--HHHHHHHHHHTCCCTT--------HHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc----CCCChHHHHHHHHHHhcCChhhCC---hHHHHHHHHHHHH
Confidence 66664432 1 33333333333322221111 133345677777777776666443 2337788888888
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHH
Q 002877 534 VVRCSNITETSQIIAELLPAIMGRLGQ 560 (872)
Q Consensus 534 l~~~~~~~~~~~~~~~l~~~l~~~l~~ 560 (872)
++..++..+ ..+++|.+++.|..
T Consensus 295 ~s~~~~~~d----~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 295 LSPFCGAQD----ARQLLPSIFQLLKK 317 (556)
T ss_dssp HHTT----T----HHHHHHHHHHHHHT
T ss_pred HcCCCCccc----HHHHHHHHHHHHHH
Confidence 887776122 44455555555543
No 135
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.59 E-value=0.00043 Score=55.74 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=66.3
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhc
Q 002877 412 FDFLLNAM-RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYE 489 (872)
Q Consensus 412 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (872)
+|.+++.+ +|+++.+|..++++++++. -+.+++.|...+.| ++.||..|+.+++.+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 46788888 8999999999999998432 23678888888888 99999999999987632
Q ss_pred cCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHH
Q 002877 490 DAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLN 532 (872)
Q Consensus 490 ~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~ 532 (872)
+..++.+.+.+.+. ++..+|..+..+|+
T Consensus 61 -------------~~~~~~L~~~l~~~--~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -------------PEAIPALIKLLQDD--DDEVVREAAAEALG 88 (88)
T ss_dssp -------------HHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHcCC--CcHHHHHHHHhhcC
Confidence 34677777777632 34556888888774
No 136
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.53 E-value=0.00017 Score=44.01 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 002877 411 GFDFLLNAMRDENNHVKDTTAWTLSRIFEL 440 (872)
Q Consensus 411 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 440 (872)
++|.+++.++|+++.||.+|+++++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 137
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.45 Score=57.68 Aligned_cols=223 Identities=10% Similarity=0.082 Sum_probs=135.8
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHh
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~ 487 (872)
.-+..+...+..++|..|-++..++++++...++ .+++..+...++..+.+ ++..|..-..+++.+-+.
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---------~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGS---------APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhccc---------cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 4455677778899999999999999999987765 46788888999988887 666666666777777776
Q ss_pred hccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhc
Q 002877 488 YEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIV 567 (872)
Q Consensus 488 ~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 567 (872)
.+.. .-.+++..-+..++...+ |.+...|+..++.++..++...+ ..+.-+.+..+..+...+-+.
T Consensus 947 vgs~-----~s~qhl~t~v~illal~~--Ds~~p~VqtwSL~al~~i~~s~~-p~~~~~ve~tlsl~~~lLls~------ 1012 (2067)
T KOG1822|consen 947 VGSI-----GSGQHLNTSVSILLALAT--DSTSPVVQTWSLHALALILDSSG-PMFRVLVEPTLSLCLKLLLSV------ 1012 (2067)
T ss_pred ccCC-----CCchhcccHHHHHHHHhh--cCCCchhhhhHHHHHHHHHcCCC-ceehhhHHHHHHHHHHHcCCC------
Confidence 5321 112345554555555555 55566889999999999998887 555555555554444433221
Q ss_pred CcchhhhHHHHHHHHHHHHH------HHHHHcCCCc--cch-hhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHH
Q 002877 568 SSDDREKQGDLQASLCGVLQ------VIIQKFSSTD--ATK-SFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAY 638 (872)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~------~l~~~~~~~~--~~~-~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 638 (872)
+....++..+.-.++. .++..+|++- +.. .....+-...+-...-.+.+++..+...++.++..+.-
T Consensus 1013 ----p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhl 1088 (2067)
T KOG1822|consen 1013 ----PTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHL 1088 (2067)
T ss_pred ----CcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHh
Confidence 1122233333333333 5666666531 000 01122223334444444556678888888988888744
Q ss_pred HhhhHHHhhhHHHHHHHHhhhcc
Q 002877 639 ATGPEFAKYMPEFYQYLQMGLQN 661 (872)
Q Consensus 639 ~~~~~~~~~l~~i~~~l~~~l~~ 661 (872)
..+. .-.++.+++.+...+..
T Consensus 1089 Fapr--~~n~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1089 FAPR--HVNLDSLVLQLCSLLSS 1109 (2067)
T ss_pred hcch--hccHHHHHHHHHHHhcc
Confidence 3332 22345666666655543
No 138
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.51 E-value=0.084 Score=54.93 Aligned_cols=277 Identities=10% Similarity=0.106 Sum_probs=147.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhh--hcC---cchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHH
Q 002877 541 TETSQIIAELLPAIMGRLGQTLELQ--IVS---SDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFL 615 (872)
Q Consensus 541 ~~~~~~~~~l~~~l~~~l~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 615 (872)
.+.+++++.-+...++.+...+... ... ++.+.....++..+|..+.-..+++++ .+.+|++.+++.+.
T Consensus 70 ~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e------~f~~~l~~fv~~vw 143 (370)
T PF08506_consen 70 QDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEE------EFEPFLPTFVQAVW 143 (370)
T ss_dssp SS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 4566777777777777776665432 222 223445567888899999999999988 88899888888888
Q ss_pred HHHccCC-----hhHHHHHHHHHHHHHHHhhh--HH--HhhhHHHHHHH-HhhhcccchHhHHHHHHHHHHHHHHHhcCC
Q 002877 616 RVFACRS-----STVHEEAMLAIGALAYATGP--EF--AKYMPEFYQYL-QMGLQNSEEYQVCAITVGVVGDVCRALDDK 685 (872)
Q Consensus 616 ~~l~~~~-----~~v~~~a~~~l~~l~~~~~~--~~--~~~l~~i~~~l-~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 685 (872)
+++.... ..+-..++..++.++..... .| .++++.++..+ ...+.-.++ =.+.+
T Consensus 144 ~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~------D~Elf---------- 207 (370)
T PF08506_consen 144 NLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREE------DEELF---------- 207 (370)
T ss_dssp HHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HH------HHHHH----------
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHH------HHHHH----------
Confidence 8876542 22334456666655443221 11 23444444322 222211110 00010
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHH
Q 002877 686 VLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLR 765 (872)
Q Consensus 686 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 765 (872)
-++=.+.+-+-+...+ ...-|.+|..++..++...++...+.+...+..++....... ...+.-+
T Consensus 208 ----EddP~EYIrrd~e~sd-~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~----------~~~w~~K 272 (370)
T PF08506_consen 208 ----EDDPEEYIRRDLEGSD-SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNP----------SNNWRSK 272 (370)
T ss_dssp ----HHSHHHHHHHHSCSS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----------TT-HHHH
T ss_pred ----ccCHHHHHHhhccccc-cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCC----------cccHHHH
Confidence 0111122222333322 345677899999999988777665555555555554433211 1224566
Q ss_pred HHHHHHHHhHhhccchh-----hhh---hhhhhH-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccC
Q 002877 766 SSIFEAYSGILQGFKSA-----RAE---VMMPYA-QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKD 836 (872)
Q Consensus 766 ~~~~~~~~~~~~~l~~~-----~~~---~~~~~~-~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 836 (872)
+.++..+.++....... ... .+..|+ ..|++-+. .+.+..+=++..|+..+..+...++++.+
T Consensus 273 D~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~l~~~~l----- 344 (370)
T PF08506_consen 273 DGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQLPKEQL----- 344 (370)
T ss_dssp HHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGGS-HHHH-----
T ss_pred HHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhhCCHHHH-----
Confidence 77777666655543211 001 223333 23344443 23335667888899999999888877533
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHH
Q 002877 837 SSFCNDFMSECLRSDDEQLKETAGWTQ 863 (872)
Q Consensus 837 ~~~v~~ll~~~~~~~~~~~~~~a~~~~ 863 (872)
...++.+++. +.+++.-|+.=|++|+
T Consensus 345 ~~~~~~l~~~-L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 345 LQIFPLLVNH-LQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHH-TTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCCcchhhhhhhhC
Confidence 4467777774 9999998988888764
No 139
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.49 E-value=0.0058 Score=55.53 Aligned_cols=134 Identities=8% Similarity=0.072 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHh-hhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 605 QTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYAT-GPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 605 ~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
..++.+...+...+.+.+.+-|-.++..+..++..+ .+.|..+....+..+...+++.+.+.++..++.++..+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 356778888999999998999999999999999988 4566678888888888888888888899999999999987764
Q ss_pred -------CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHH
Q 002877 684 -------DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQE 742 (872)
Q Consensus 684 -------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 742 (872)
+...|.++.+++.+++.+++ ......++.++..+...++..|.||...+-..+..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 33578899999999998774 45678999999999999999999988887655544
No 140
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.48 E-value=0.11 Score=52.75 Aligned_cols=192 Identities=17% Similarity=0.131 Sum_probs=125.9
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHhh--hhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCC
Q 002877 229 TAKSKEVEIRQAAFECLVSIASTY--YEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGD 306 (872)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~ 306 (872)
.+.+.....|..++..+..++... ++++..+...++..+...++....+=+..|+..+.-++-.-.
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg------------ 118 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG------------ 118 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC------------
Confidence 344566889999999998888654 566677777888888888876543333344444444332200
Q ss_pred CCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcc--hh---chHH--HHHhhccC
Q 002877 307 SDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEV--VP---LVMP--FVEANIVK 379 (872)
Q Consensus 307 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~--~~---~l~~--~l~~~l~~ 379 (872)
. ..-....+..+.|.|...+.... .....|.++..+|..++...+... .. ..+. +.......
T Consensus 119 ~----g~~~~ei~~~~~~~L~~~l~d~s-------~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~ 187 (309)
T PF05004_consen 119 A----GEDSEEIFEELKPVLKRILTDSS-------ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKS 187 (309)
T ss_pred C----CccHHHHHHHHHHHHHHHHhCCc-------cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCc
Confidence 0 00124455677788777776432 124678888888888776654322 22 1233 11122221
Q ss_pred ----------CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 380 ----------SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 380 ----------~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
++....-+|+.+++-+...+....+...+...+|.+...|+.++..||.+|-.+|.-+.+....
T Consensus 188 ~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 188 DGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred CCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 1245788999999999887754456667788999999999999999999999999988776654
No 141
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.25 Score=53.53 Aligned_cols=236 Identities=16% Similarity=0.124 Sum_probs=134.3
Q ss_pred hHHHHHHHhcCCC-HHHHHHHHHHHHH-HHhcChHHHHHHHHHHHh---cCCCChhHHHHHHHHHhhcccCCcccchHHH
Q 002877 4 EITQFLLAAQSAD-ANIRNEAEANLRQ-LQQQNLPGFLLSLSVELV---NNEKPTESRRLAGIMLKNSLDAKDATTKEDL 78 (872)
Q Consensus 4 ~~~~~l~~~~s~~-~~~r~~A~~~L~~-~~~~~~~~~~~~l~~il~---~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~ 78 (872)
+|.+..+...++. ....+.+-+.+.+ -.+ .+|+..+-.++. +++.++.+-.+++.++--+=
T Consensus 9 ~If~k~Q~s~agh~~kl~~k~~em~t~~~F~---eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~----------- 74 (892)
T KOG2025|consen 9 LIFNKIQQSDAGHYSKLLAKVMEMLTAHEFS---EEFLRVVNYILLVKKRESIPDRILSFLARFVESLP----------- 74 (892)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHhhhHhhhH---HHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhh-----------
Confidence 5677777777777 3333333222221 122 345544444432 23334555555544432111
Q ss_pred HhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHH--hhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHH
Q 002877 79 AKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIAS--IEIPQKQWPELIRSLLNNMTQQDSLAALKQATLET 156 (872)
Q Consensus 79 ~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~--~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~ 156 (872)
+ .....+..+++...++++..+++..||...+++++.+.. ...++.-++.+...+...+.+. .+.+|.-|+.+
T Consensus 75 --q-~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr--ep~VRiqAv~a 149 (892)
T KOG2025|consen 75 --Q-LDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR--EPNVRIQAVLA 149 (892)
T ss_pred --c-cCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc--CchHHHHHHHH
Confidence 0 123345677777888888888999999999999999987 3334445666777778888887 88999999999
Q ss_pred HHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHH
Q 002877 157 LGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVE 236 (872)
Q Consensus 157 l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 236 (872)
|+++-+.-. ..-..+...+...++++ |+++||.+++.++..- + . .++.+.....+-+..
T Consensus 150 LsrlQ~d~~------dee~~v~n~l~~liqnD-pS~EVRRaaLsnI~vd-----n---s------Tlp~IveRarDV~~a 208 (892)
T KOG2025|consen 150 LSRLQGDPK------DEECPVVNLLKDLIQND-PSDEVRRAALSNISVD-----N---S------TLPCIVERARDVSGA 208 (892)
T ss_pred HHHHhcCCC------CCcccHHHHHHHHHhcC-CcHHHHHHHHHhhccC-----c---c------cchhHHHHhhhhhHH
Confidence 998875421 11122444445555544 8999999999887641 0 0 223334444444555
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHH
Q 002877 237 IRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAV 283 (872)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al 283 (872)
.|+.+.+-+..=+...+..+ ..-+.++-..+.+.+..++..+.
T Consensus 209 nRrlvY~r~lpkid~r~lsi----~krv~LlewgLnDRe~sVk~A~~ 251 (892)
T KOG2025|consen 209 NRRLVYERCLPKIDLRSLSI----DKRVLLLEWGLNDREFSVKGALV 251 (892)
T ss_pred HHHHHHHHhhhhhhhhhhhH----HHHHHHHHHhhhhhhhHHHHHHH
Confidence 56655543322222222211 23334444555665655654443
No 142
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.44 E-value=0.0025 Score=57.32 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHH-hhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHH---HHHhc
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYA-TGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDV---CRALD 683 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l---~~~~~ 683 (872)
+.+++.+.+-+...+...+--|...+..+... .++.+.|.++++++.|...|... ++++...++.+|..+ ...+|
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence 46677777777777777777788888888887 77899999999999999999865 577999999999999 56678
Q ss_pred CCccccHHHHHHHHHHHhcCC---------CCCCCCchhHHHHHHHHHHhhccc
Q 002877 684 DKVLPFCDGIMSLLLNALSNS---------QLNRSVKPPILSCFGDIALAIGVH 728 (872)
Q Consensus 684 ~~~~~~~~~i~~~l~~~l~~~---------~~~~~~~~~~~~~l~~l~~~~~~~ 728 (872)
+.+.||..+++|.+--..+.. ....+++..+-.++..+-..-|++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 999999999999877433322 113445555555666555555543
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.41 E-value=0.033 Score=56.52 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=137.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhcc
Q 002877 412 FDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYED 490 (872)
Q Consensus 412 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~ 490 (872)
+...+..+.+.....|.+++..+.++...... +.........+++.+.+.+.. ...-+..|+.++.-++-..+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-----~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg- 118 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-----PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG- 118 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC-
Confidence 44555666788899999999988877654332 112334566788888888876 55556667777777776652
Q ss_pred CCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcC--
Q 002877 491 AGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVS-- 568 (872)
Q Consensus 491 ~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-- 568 (872)
+ +......+..+.|.|.+.+.... ....+|..++.||+.+.-..+ .+. .-...+|..+-..|...+-..--.
T Consensus 119 --~-g~~~~ei~~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~-~d~-~~~~~~~~~le~if~~~~~~~~~~~~ 192 (309)
T PF05004_consen 119 --A-GEDSEEIFEELKPVLKRILTDSS-ASPKARAACLEALAICTFVGG-SDE-EETEELMESLESIFLLSILKSDGNAP 192 (309)
T ss_pred --C-CccHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhc-CCh-hHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 1 45567788888898888887432 345668888889888776655 333 222222233222222221000000
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh
Q 002877 569 SDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG 641 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 641 (872)
.-.......+...++.+++.++..++.. .+.......++.+..+|.+.+..||-.|-.+|+-+.+...
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~-----~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTTLPDS-----KLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 0001122456778888888888777663 5666678889999999999999999999999888766544
No 144
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.17 Score=49.25 Aligned_cols=296 Identities=17% Similarity=0.175 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccc---hhhHHHHHHHHHhcccCC
Q 002877 112 SAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLV---QDEVNAVLTAVVQGMNLA 188 (872)
Q Consensus 112 ~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~---~~~~~~l~~~l~~~l~~~ 188 (872)
+..++..+.+..++..--+++.+.|...+..+ +..++.-++..++.+.++.+....+ .-.-..+++.++.++..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiad--dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg- 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIAD--DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG- 139 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCC--cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-
Confidence 66677778777766556788999999999888 7788888888899999987532220 11235688888888887
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH---hhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhH-HHHH
Q 002877 189 EHSAEVRLAATRALYNALDFAL---TNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYM-QTLF 264 (872)
Q Consensus 189 ~~~~~vr~~al~~l~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~ 264 (872)
.+.+|-++|++.+..+..+-. .-|..+..-+. .+.++...-+.-.|..+++.+..+.+..+......- ..++
T Consensus 140 -eddeVAkAAiesikrialfpaaleaiFeSellDdl---hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLl 215 (524)
T KOG4413|consen 140 -EDDEVAKAAIESIKRIALFPAALEAIFESELLDDL---HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLL 215 (524)
T ss_pred -CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChH---HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHH
Confidence 678999999999988754211 11111100000 011111112345566777777777776655443221 2577
Q ss_pred HHHHHHhcC-CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCC
Q 002877 265 ELTSNAVKG-DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSI 343 (872)
Q Consensus 265 ~~~~~~~~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~ 343 (872)
.++...++. ++.-++..++++...+++.+.. ..|..+ ..++..+.+++...+.|+-
T Consensus 216 dlLeaElkGteDtLVianciElvteLaeteHg----------------reflaQ--eglIdlicnIIsGadsdPf----- 272 (524)
T KOG4413|consen 216 DLLEAELKGTEDTLVIANCIELVTELAETEHG----------------REFLAQ--EGLIDLICNIISGADSDPF----- 272 (524)
T ss_pred HHHHHHhcCCcceeehhhHHHHHHHHHHHhhh----------------hhhcch--hhHHHHHHHHhhCCCCCcH-----
Confidence 777777776 5666788899999998876431 112211 2466777777665443321
Q ss_pred cchhhhHHHHHHHHHhhcCCc---------chhc---hHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccch-hHhHHh
Q 002877 344 WNISMAGGTCLGLVARTVGDE---------VVPL---VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKL-APLVHA 410 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~---------~~~~---l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~-~~~l~~ 410 (872)
.+.| ++.-..+.+|+. +... .+.-..+.+...++...++|+-++|.+.+......+ ...-+.
T Consensus 273 ekfr-----almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgpp 347 (524)
T KOG4413|consen 273 EKFR-----ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPP 347 (524)
T ss_pred HHHH-----HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCCh
Confidence 1222 233333334321 1111 222233445567788899999999999876531211 111111
Q ss_pred HHHHHHHhcCCCcH-HHHHHHHHHHHHHHhhcc
Q 002877 411 GFDFLLNAMRDENN-HVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 411 l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~ 442 (872)
-...++....|.+. .-+.++..++..++..+.
T Consensus 348 aaehllarafdqnahakqeaaihaLaaIagelr 380 (524)
T KOG4413|consen 348 AAEHLLARAFDQNAHAKQEAAIHALAAIAGELR 380 (524)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhcccc
Confidence 22333333334433 345677888888876554
No 145
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.35 E-value=0.0092 Score=67.44 Aligned_cols=196 Identities=13% Similarity=0.173 Sum_probs=149.1
Q ss_pred ccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHH
Q 002877 454 ENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLN 532 (872)
Q Consensus 454 ~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~ 532 (872)
+..+.+-+.+...+.+ ++.-|..|...+...++.. +....+-+..++-.+++.... +.+.++-..+..+|.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~------~~~~~~~~~~ll~~~~ki~~k--DaN~~v~~~aa~~l~ 320 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEA------KKEIVKGYTGLLGILLKIRLK--DANINVVMLAAQILE 320 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhcc------ccccccCcchHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 4455666667777777 8888888888888888764 323344455566666666553 346777889999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHH
Q 002877 533 EVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMV 612 (872)
Q Consensus 533 ~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 612 (872)
.++...+ ..+.+|...++|.+++.+.. ....++..+..++..+++.. .+..+.+
T Consensus 321 ~ia~~lr-~~~~~~~~~v~p~lld~lke-------------kk~~l~d~l~~~~d~~~ns~------------~l~~~~~ 374 (815)
T KOG1820|consen 321 LIAKKLR-PLFRKYAKNVFPSLLDRLKE-------------KKSELRDALLKALDAILNST------------PLSKMSE 374 (815)
T ss_pred HHHHhcc-hhhHHHHHhhcchHHHHhhh-------------ccHHHHHHHHHHHHHHHhcc------------cHHHHHH
Confidence 9999999 88999999999999998874 23456666666666665422 2456788
Q ss_pred HHHHHHccCChhHHHHHHHHHHHHHHHhhh--HHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 613 LFLRVFACRSSTVHEEAMLAIGALAYATGP--EFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 613 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
.+...+.+.++.++..+..++.+.....+. .+..-+..++|.+.....+. +.+||.+|..+++.+.+.+|+
T Consensus 375 ~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 375 AILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhH
Confidence 888999999999999999999998887763 34456778999998887765 467999999999999999984
No 146
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.26 E-value=0.25 Score=53.04 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=89.7
Q ss_pred chhhhHHHHHHHHHhhcC---C-cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhc
Q 002877 345 NISMAGGTCLGLVARTVG---D-EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAM 419 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~~---~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l 419 (872)
.++.+|..|+..++.... . .--..+...+.+.+.+++-.+..+++-++..+.-.++ +.-..++. ..+..+.+.+
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHh
Confidence 567888888888776531 1 1112334444444467777777777777777776654 22233444 7888999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHH-HHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 420 RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRIL-TVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
.++++.+|..+.|+|..+.=...+ ......+.++- ..+...++| ++.|++.|...+.++...+
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de------~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDE------EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchH------HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 999999999999999876533222 01112223332 334455667 9999999999999998664
No 147
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.62 Score=53.81 Aligned_cols=179 Identities=16% Similarity=0.317 Sum_probs=117.6
Q ss_pred hhHHHHHHHHhhhccc---chHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 002877 647 YMPEFYQYLQMGLQNS---EEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 647 ~l~~i~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
.+..+.|.+....++. .+|+++.+|--+++.++--.. .|...=+|.++..+.... .+-+|.++..++|+++.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp-~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSP-SPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCC-Cceeeecchheccchhh
Confidence 5667788887777552 357899999999998865432 345556788888887432 78899999999999999
Q ss_pred hhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhc-cchhhhhhhhhhHHHHHHHHHHHh
Q 002877 724 AIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQG-FKSARAEVMMPYAQHLLQFIELIF 802 (872)
Q Consensus 724 ~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~il~~l~~~~ 802 (872)
.++.-+.++-+.++..+... ...+|.+++.++..++.. +-+ ++-+ +..+..++
T Consensus 991 ~fpnlie~~T~~Ly~rL~D~-----------------~~~vRkta~lvlshLILndmiK-----VKGq----l~eMA~cl 1044 (1251)
T KOG0414|consen 991 RFPNLIEPWTEHLYRRLRDE-----------------SPSVRKTALLVLSHLILNDMIK-----VKGQ----LSEMALCL 1044 (1251)
T ss_pred hcccccchhhHHHHHHhcCc-----------------cHHHHHHHHHHHHHHHHhhhhH-----hccc----HHHHHHHh
Confidence 88876666666555444321 247899988888876553 221 2223 33455556
Q ss_pred cCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcC---CcHHHHHHHHHHHHHH
Q 002877 803 KDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRS---DDEQLKETAGWTQGMI 866 (872)
Q Consensus 803 ~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~---~~~~~~~~a~~~~~~~ 866 (872)
.| ++++++..|=..+.++.+...+ + | ..+++++.. +.+ .-.+.+..-.|-+|.|
T Consensus 1045 ~D--~~~~IsdlAk~FF~Els~k~n~--i---y--nlLPdil~~-Ls~~~l~~~~~~~vm~~li~~i 1101 (1251)
T KOG0414|consen 1045 ED--PNAEISDLAKSFFKELSSKGNT--I---Y--NLLPDILSR-LSNGNLEEESYKTVMEFLIGLI 1101 (1251)
T ss_pred cC--CcHHHHHHHHHHHHHhhhcccc--h---h--hhchHHHHh-hccCcccchhhHHHHHHHHHHh
Confidence 66 6788888888788877765522 2 1 245566665 444 3344555555666555
No 148
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.23 E-value=0.0009 Score=60.07 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHH-hcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHH---HHh
Q 002877 649 PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRA-LDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDI---ALA 724 (872)
Q Consensus 649 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l---~~~ 724 (872)
+..+|.+...+...++| -+-.|...+.++... .++.+.|.+++++..+.+.|++. +.++...++.++..+ ...
T Consensus 37 ~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr--~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR--DPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhh
Confidence 45667777777766655 778888899999888 67889999999999999999988 899999999999999 777
Q ss_pred hccchhhhHHHHHHHHHH
Q 002877 725 IGVHFEKYVPHALQMMQE 742 (872)
Q Consensus 725 ~~~~~~~~l~~i~~~l~~ 742 (872)
.|+.+.||+.+++|.+--
T Consensus 114 vG~aLvPyyrqLLp~ln~ 131 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNL 131 (183)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 899999999999998874
No 149
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.20 E-value=0.6 Score=52.44 Aligned_cols=144 Identities=19% Similarity=0.337 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHh
Q 002877 667 VCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKA 746 (872)
Q Consensus 667 v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~ 746 (872)
++..++-.++.++-..+. .....+|.+.+-|.-.+ ...+|.++..+++++|..+--....|+|.+-..|..
T Consensus 947 vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~-~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D---- 1017 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNT-AHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD---- 1017 (1529)
T ss_pred HHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhh-HHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC----
Confidence 566677777777766553 23345666776666543 567888888999999988765556677766554442
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHH-HHHHHHhcCCCCCHhHHHHHHHHHHHHHhh
Q 002877 747 CAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLL-QFIELIFKDNHRDENVTKAAVAVMGDLADA 825 (872)
Q Consensus 747 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il-~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~ 825 (872)
...-+|.+.+..+..+++- .+..+-+.++ .++..+ -| .++++|..|=.+|+.+...
T Consensus 1018 -------------p~~iVRrqt~ilL~rLLq~-------~~vKw~G~Lf~Rf~l~l-~D--~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1018 -------------PSVIVRRQTIILLARLLQF-------GIVKWNGELFIRFMLAL-LD--ANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred -------------chHHHHHHHHHHHHHHHhh-------hhhhcchhhHHHHHHHH-cc--cCHHHHHHHHHHHHHHHhh
Confidence 2235777766666666542 2333333433 333333 33 6899999999999999887
Q ss_pred hCcchhhhccCchHHHHHHHH
Q 002877 826 LGPNTKLLFKDSSFCNDFMSE 846 (872)
Q Consensus 826 ~~~~~~~~~~~~~~v~~ll~~ 846 (872)
=.+. ++..+||..++..
T Consensus 1075 ~~P~----~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1075 EEPN----FFPLNFVEYIIAL 1091 (1529)
T ss_pred cCcc----chHHHHHHHHHHH
Confidence 7765 4456678777764
No 150
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.52 Score=51.40 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=85.6
Q ss_pred HHHHHHHH-HccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccc
Q 002877 610 IMVLFLRV-FACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLP 688 (872)
Q Consensus 610 l~~~l~~~-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 688 (872)
.+..++.. .++.+..||..|..++|-++..-+ ...|...+.|..+.++.||..+..+||-.+...|.
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~---- 622 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL---- 622 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----
Confidence 44445554 567788999999999887754332 34555556666677889999999999988777663
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q 002877 689 FCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 689 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~ 745 (872)
...+..|-++..++ ..-||+.|+.+++-|.....+..-|-...+...+.+.+.
T Consensus 623 --~eAi~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 623 --KEAINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred --HHHHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhh
Confidence 24455555555555 677999999999999887777776766666666666544
No 151
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.17 E-value=0.55 Score=51.68 Aligned_cols=373 Identities=12% Similarity=0.155 Sum_probs=188.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhc--ChHH---HHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHh
Q 002877 6 TQFLLAAQSADANIRNEAEANLRQLQQQ--NLPG---FLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAK 80 (872)
Q Consensus 6 ~~~l~~~~s~~~~~r~~A~~~L~~~~~~--~~~~---~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
--+|..+-||+..+|++.-+.|+++.+. ..+. -+..|++...+++.+.-+|.++.+.++.-+
T Consensus 26 ~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~------------- 92 (501)
T PF13001_consen 26 PPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGF------------- 92 (501)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhh-------------
Confidence 4466777899999999999999887664 1122 267888888887668999999999997654
Q ss_pred hhhcCChHHHHHHHHHHHHhhcCCCh---hHhhHHHHHHHHHHHhh----cCCCCchHHHHHHHHhhccCCccHHHHHHH
Q 002877 81 QWLAIDISYKSQVKDLLLRTLASPVP---EARHTSAQVIAKIASIE----IPQKQWPELIRSLLNNMTQQDSLAALKQAT 153 (872)
Q Consensus 81 ~w~~l~~~~~~~i~~~Ll~~l~~~~~---~vr~~~~~~l~~i~~~~----~p~~~~~~ll~~l~~~l~~~~~~~~~r~~a 153 (872)
+.++.+.+..+-..+++.+..... .....++..+..+.+.. .| ..|.+.-....+...-. +.......
T Consensus 93 --~Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~-~~~~~~~~~~~~~~~l~--~~~~~~~l 167 (501)
T PF13001_consen 93 --DRLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEP-PRGSKEDEKFRDSLGLS--DFCDDVFL 167 (501)
T ss_pred --hcCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccc-cccchhhhcHHHHHhhc--chHHHHHc
Confidence 578899999999999999885332 22222333332233221 01 12222221111111111 00000000
Q ss_pred HHHHHHhhh----------ccC---ccccchhhHHHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 002877 154 LETLGYVCE----------EIS---HQDLVQDEVNAVLTAVVQGMNLA--EHSAEVRLAATRALYNALDFALTNFQNEME 218 (872)
Q Consensus 154 l~~l~~l~~----------~~~---~~~l~~~~~~~l~~~l~~~l~~~--~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 218 (872)
+.-++.... ... +..++......+. ....... ..-.++|...++.+.+.. +...
T Consensus 168 ~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~---~~~~~~~~~~~L~~~K~~il~fL~sg~------f~d~-- 236 (501)
T PF13001_consen 168 APWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIE---GKGPTFPSRENLTERKLAILKFLASGF------FPDE-- 236 (501)
T ss_pred chhhccccccccccccCCCCCCCCCCCCCCHHhhhhhh---ccCCCCCcHHHHHHHHHHHHHHHHhcC------CCcH--
Confidence 011111100 000 0111000000000 0000000 012345555555544321 1111
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH--Hhc-----CCChHHHHHHHHhHhHHhH
Q 002877 219 RNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSN--AVK-----GDEEAVALQAVEFWSSICD 291 (872)
Q Consensus 219 ~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~--~~~-----~~~~~~~~~al~~l~~l~~ 291 (872)
..++..+... .+.+.++...+=..|..+...+.+ ...++.++.+... ... ...+.++...+.+++.-..
T Consensus 237 -~~~~~~liAs-ad~~~~V~~~ae~~LKr~~~~~ed--~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~ 312 (501)
T PF13001_consen 237 -ERFPPLLIAS-ADSNSSVSDRAEDLLKRLSVSLED--PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI 312 (501)
T ss_pred -hHHhheeeEE-eCCcchHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH
Confidence 1133333332 345566666666666555433111 1233445554441 111 1245566666655533211
Q ss_pred hhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHH---HHHHhhcCCcchhc
Q 002877 292 EEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCL---GLVARTVGDEVVPL 368 (872)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l---~~l~~~~~~~~~~~ 368 (872)
. -...+.++.+++..+.... .....|..+.+.+ .......+...+..
T Consensus 313 A-----------------------a~~~~~~~~i~~~~l~~~~-------~~~klk~~~l~F~~~~~~~~~~~~~~~l~~ 362 (501)
T PF13001_consen 313 A-----------------------ATSFPNILQIVFDGLYSDN-------TNSKLKSLALQFIRGSSWIFKHISPQILKL 362 (501)
T ss_pred H-----------------------HhCCccHHHHHhccccCCc-------cccccchhcchhhhcchHHhhhcCHHHHHH
Confidence 1 1112233344443332211 1145566666666 55555555444444
Q ss_pred hHHHHHhh----c--------cCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002877 369 VMPFVEAN----I--------VKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSR 436 (872)
Q Consensus 369 l~~~l~~~----l--------~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 436 (872)
+-+.+... + .+.+-..|..+..++|.++.... ..+... -.++..++..|.++.+.+|.+.-.+|+.
T Consensus 363 l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p-~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALss 440 (501)
T PF13001_consen 363 LRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP-SLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSS 440 (501)
T ss_pred HHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc-cccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 43333322 2 12346678899999999998773 444222 2678888899999999999999999999
Q ss_pred HHhhccC
Q 002877 437 IFELLHC 443 (872)
Q Consensus 437 l~~~~~~ 443 (872)
++..+..
T Consensus 441 l~~af~~ 447 (501)
T PF13001_consen 441 LAPAFKD 447 (501)
T ss_pred HHHHHhc
Confidence 9988876
No 152
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.15 E-value=0.077 Score=54.10 Aligned_cols=128 Identities=13% Similarity=0.195 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCCccchhhchh--hHHHHHHHHH-HHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhc
Q 002877 584 GVLQVIIQKFSSTDATKSFILQ--TADQIMVLFL-RVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQ 660 (872)
Q Consensus 584 ~~l~~l~~~~~~~~~~~~~~~~--~~~~l~~~l~-~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 660 (872)
...+.+.+.... .+.+ .+..+++.++ ..+.+.+..+|+.++.++|-++-..++....+++ .+...++
T Consensus 5 ~i~~~lL~~~~~------~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~----l~~~~~~ 74 (298)
T PF12719_consen 5 SITQSLLENVSS------SLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLP----LFLQALQ 74 (298)
T ss_pred HHHHHHHHhccc------cCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHH----HHHHHHH
Confidence 344445555443 3443 3346665544 7788889999999999999987665544444444 4444443
Q ss_pred ccchHhHHHHHHHHHHHHHHHhcCCccc---------cHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHh
Q 002877 661 NSEEYQVCAITVGVVGDVCRALDDKVLP---------FCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALA 724 (872)
Q Consensus 661 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~---------~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~ 724 (872)
. ++.+++..|+.++.++...+|..+.. ....++..+.+.+.+. +.+++..+...++++...
T Consensus 75 ~-~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 75 K-DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred h-CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhc
Confidence 3 35679999999999999998843322 2346888888888877 778999999999998764
No 153
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.13 E-value=0.31 Score=51.24 Aligned_cols=356 Identities=11% Similarity=0.092 Sum_probs=173.0
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHH
Q 002877 34 NLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSA 113 (872)
Q Consensus 34 ~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~ 113 (872)
+.+.+...++.++.. ...+.+.+....++--.+.... .+...+ ..... .....-..++..|..++..+...++
T Consensus 50 ~~~~y~~~~l~ll~~-~~~~d~vqyvL~Li~dll~~~~-~~~~~f----~~~~~-~~~~~~~~fl~lL~~~d~~i~~~a~ 122 (429)
T cd00256 50 LSGQYVKTFVNLLSQ-IDKDDTVRYVLTLIDDMLQEDD-TRVKLF----HDDAL-LKKKTWEPFFNLLNRQDQFIVHMSF 122 (429)
T ss_pred cHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhch-HHHHHH----HHHhh-ccccchHHHHHHHcCCchhHHHHHH
Confidence 447888888888876 4577888888888877665321 111111 11000 0012234555677788899999999
Q ss_pred HHHHHHHHhhcCCCCc----hHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccC-ccccchhhHHHHHHHHHhcccCC
Q 002877 114 QVIAKIASIEIPQKQW----PELIRSLLNNMTQQDSLAALKQATLETLGYVCEEIS-HQDLVQDEVNAVLTAVVQGMNLA 188 (872)
Q Consensus 114 ~~l~~i~~~~~p~~~~----~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~l~~~~~~~l~~~l~~~l~~~ 188 (872)
.+++.++... +...- +.+++.+...++++. +...+..++.+++.+...-. ...+ .. ...++.+.+.++..
T Consensus 123 ~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~~~~~R~~f-~~--~~~v~~L~~~L~~~ 197 (429)
T cd00256 123 SILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLRVDEYRFAF-VL--ADGVPTLVKLLSNA 197 (429)
T ss_pred HHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhCCchHHHHH-HH--ccCHHHHHHHHhhc
Confidence 9999998654 22112 224556666665531 35567788889988776421 1112 10 11445555555542
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhh------hhHHhHH
Q 002877 189 EHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYE------VLEPYMQ 261 (872)
Q Consensus 189 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~------~~~~~l~ 261 (872)
..+.++...++-|+=-+ -+...........-+++.+.+.++ +..+++-+-++.++..+++...+ .....+.
T Consensus 198 ~~~~Ql~Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~ 275 (429)
T cd00256 198 TLGFQLQYQSIFCIWLL--TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ 275 (429)
T ss_pred cccHHHHHHHHHHHHHH--hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence 22445555555554322 111111111111125566666554 34566667777777777664311 1111111
Q ss_pred -HHHHHHHHHhcC---CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCc
Q 002877 262 -TLFELTSNAVKG---DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQ 337 (872)
Q Consensus 262 -~l~~~~~~~~~~---~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~ 337 (872)
.+.+. +..+.. .|+++. ..++++....+...... . -+..|..++..-.+.
T Consensus 276 ~~l~~~-l~~L~~rk~~DedL~-edl~~L~e~L~~~~k~l--------------t-sfD~Y~~El~sg~L~--------- 329 (429)
T cd00256 276 CKVLKT-LQSLEQRKYDDEDLT-DDLKFLTEELKNSVQDL--------------S-SFDEYKSELRSGRLH--------- 329 (429)
T ss_pred cChHHH-HHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHc--------------C-CHHHHHHHHhcCCcc---------
Confidence 12221 222222 344433 44555555544322100 0 012233222221111
Q ss_pred ccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhc-cCCCcchHHHHHHHHHHhhcCCCccchhHhHH--hHHHH
Q 002877 338 DQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANI-VKSDWRCREAATYAFGSVLEGPTIDKLAPLVH--AGFDF 414 (872)
Q Consensus 338 ~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~ 414 (872)
|++-.....+-..=+..+.+.-. .++..+.+.+ .+.++..-..|+.=+|.++... |..- ..+. ..-..
T Consensus 330 ------WSp~H~se~FW~EN~~kf~~~~~-~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~-P~gr-~i~~~lg~K~~ 400 (429)
T cd00256 330 ------WSPVHKSEKFWRENADRLNEKNY-ELLKILIHLLETSVDPIILAVACHDIGEYVRHY-PRGK-DVVEQLGGKQR 400 (429)
T ss_pred ------CCCCCCCchHHHHHHHHHHhcch-HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC-ccHH-HHHHHcCcHHH
Confidence 22222111222222222211111 1111222222 2344555566777777777654 1211 1111 23456
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHH
Q 002877 415 LLNAMRDENNHVKDTTAWTLSRIF 438 (872)
Q Consensus 415 l~~~l~d~~~~vr~~a~~~l~~l~ 438 (872)
+++.+.++++.||+.|+.|+.++.
T Consensus 401 vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 401 VMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888899999999999999998874
No 154
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.02 E-value=0.059 Score=47.50 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=95.3
Q ss_pred HHHHHHHHhhcCCC--hhHhhHHHHHHHHHHHhh--cCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCcc
Q 002877 92 QVKDLLLRTLASPV--PEARHTSAQVIAKIASIE--IPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQ 167 (872)
Q Consensus 92 ~i~~~Ll~~l~~~~--~~vr~~~~~~l~~i~~~~--~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 167 (872)
.|++.|+.+|...+ ...-+.++++++.++... ++++.|+++.+.+...... ++ ..|..++..+...+.++
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~---e~---~kA~~IF~~L~~~l~~e 76 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN---EP---VKAFHIFICLPMPLYGE 76 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc---ch---HHHHHHHHhCCchhhhh
Confidence 46778888887643 345566777777766543 3667999999877775522 22 45777887777433467
Q ss_pred ccchhhHHHHHHHHHhcccCCCC-CHHHHHHHH-HHHHHHHHHHHhhhhhhhHHH---HHHHHHHHhhcCCcH-HHHHHH
Q 002877 168 DLVQDEVNAVLTAVVQGMNLAEH-SAEVRLAAT-RALYNALDFALTNFQNEMERN---YIMKVVCETAKSKEV-EIRQAA 241 (872)
Q Consensus 168 ~l~~~~~~~l~~~l~~~l~~~~~-~~~vr~~al-~~l~~~~~~~~~~~~~~~~~~---~ll~~l~~~~~~~~~-~~~~~~ 241 (872)
.+ .+.++.+++.+.+.|.+++. +.+....|+ .++...++.+.........++ .+++.+..+++.+.+ ..-..+
T Consensus 77 fl-~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rg 155 (174)
T PF04510_consen 77 FL-IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRG 155 (174)
T ss_pred HH-HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77 88999999999999998521 222223333 334445554444332222222 245556666665555 777778
Q ss_pred HHHHHHHHHhh
Q 002877 242 FECLVSIASTY 252 (872)
Q Consensus 242 ~~~l~~l~~~~ 252 (872)
++-+..++...
T Consensus 156 l~~~e~~v~~~ 166 (174)
T PF04510_consen 156 LRDFESFVSRQ 166 (174)
T ss_pred HHHHHHHHHHH
Confidence 87777776543
No 155
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.98 E-value=0.14 Score=52.22 Aligned_cols=153 Identities=19% Similarity=0.256 Sum_probs=96.6
Q ss_pred hHHHHHHH-HhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Q 002877 130 PELIRSLL-NNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDF 208 (872)
Q Consensus 130 ~~ll~~l~-~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 208 (872)
..++..++ ..++++ ++.+|+.|+.|+|..|--- .....+.++.+.+.++. .+..|+..|++++..++..
T Consensus 25 ~~ll~~lI~P~v~~~--~~~vR~~al~cLGl~~Lld------~~~a~~~l~l~~~~~~~--~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 25 ESLLDSLILPAVQSS--DPAVRELALKCLGLCCLLD------KELAKEHLPLFLQALQK--DDEEVKITALKALFDLLLT 94 (298)
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhC------hHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence 36666665 677777 8899999999999877643 33445556666666654 4789999999999999865
Q ss_pred HHhh-hhhhh------HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhh-HHhHHHHHHHHHHHhcCCChHHHH
Q 002877 209 ALTN-FQNEM------ERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVL-EPYMQTLFELTSNAVKGDEEAVAL 280 (872)
Q Consensus 209 ~~~~-~~~~~------~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~ 280 (872)
.+.. ++... ....+.+.+.+.+.+.+++++..+++.+..+.-...-.- ...+..++-........++..+|.
T Consensus 95 ~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 95 HGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred cCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHH
Confidence 4322 22111 123478888888888899999999999999874321111 111222222222222234455665
Q ss_pred HHHHhHhHHhHh
Q 002877 281 QAVEFWSSICDE 292 (872)
Q Consensus 281 ~al~~l~~l~~~ 292 (872)
.---|+-.++..
T Consensus 175 ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 175 CLSVFFPVYASS 186 (298)
T ss_pred HHHHHHHHHHcC
Confidence 555566555543
No 156
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.98 E-value=0.25 Score=51.69 Aligned_cols=250 Identities=20% Similarity=0.217 Sum_probs=155.0
Q ss_pred hHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 002877 130 PELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFA 209 (872)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 209 (872)
+.-.+.+.+.+.++ +...|..+...++.+ -....++.+...+.+ .+..+|..+..+|+.+-
T Consensus 42 ~~~~~~~~~~l~~~--~~~vr~~aa~~l~~~------------~~~~av~~l~~~l~d--~~~~vr~~a~~aLg~~~--- 102 (335)
T COG1413 42 PEAADELLKLLEDE--DLLVRLSAAVALGEL------------GSEEAVPLLRELLSD--EDPRVRDAAADALGELG--- 102 (335)
T ss_pred hhhHHHHHHHHcCC--CHHHHHHHHHHHhhh------------chHHHHHHHHHHhcC--CCHHHHHHHHHHHHccC---
Confidence 35677888888888 788888888876432 344567788888888 67899999999888641
Q ss_pred HhhhhhhhHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCC------------h
Q 002877 210 LTNFQNEMERNYIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDE------------E 276 (872)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~------------~ 276 (872)
.. .-.+.+...+. +++..+|..+...+..+-.... + ..++.. ..+.. .
T Consensus 103 -----~~----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--~----~~l~~~----l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 103 -----DP----EAVPPLVELLENDENEGVRAAAARALGKLGDERA--L----DPLLEA----LQDEDSGSAAAALDAALL 163 (335)
T ss_pred -----Ch----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--h----HHHHHH----hccchhhhhhhhccchHH
Confidence 11 12334444444 7899999999999988755321 1 122221 12211 1
Q ss_pred HHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHH
Q 002877 277 AVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGL 356 (872)
Q Consensus 277 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~ 356 (872)
.++..+...+..+... ...+.+...+... ...+|.++...|..
T Consensus 164 ~~r~~a~~~l~~~~~~----------------------------~~~~~l~~~l~~~---------~~~vr~~Aa~aL~~ 206 (335)
T COG1413 164 DVRAAAAEALGELGDP----------------------------EAIPLLIELLEDE---------DADVRRAAASALGQ 206 (335)
T ss_pred HHHHHHHHHHHHcCCh----------------------------hhhHHHHHHHhCc---------hHHHHHHHHHHHHH
Confidence 3444444333333221 1222233333221 14688888888877
Q ss_pred HHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002877 357 VARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSR 436 (872)
Q Consensus 357 l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 436 (872)
+.... ..+.+.+...+.+++|.+|..++.+++.+... ...+.+...+.+.++.++..+....+.
T Consensus 207 ~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~ 270 (335)
T COG1413 207 LGSEN-----VEAADLLVKALSDESLEVRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGA 270 (335)
T ss_pred hhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhcc
Confidence 66543 45567778888899999999999888876542 234566777788888888777666551
Q ss_pred HHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 437 IFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
+ ........+...+.+ ...++..+..++..+...
T Consensus 271 ~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 271 L-----------------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQE 305 (335)
T ss_pred c-----------------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhccc
Confidence 1 111222334444555 777888888777766544
No 157
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.93 E-value=0.83 Score=49.43 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcc-cc---hHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhH
Q 002877 36 PGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDA-TT---KEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHT 111 (872)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~-~~---~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~ 111 (872)
.++...++.++.+.-.......--...|++....-.. .+ ...+-.....++|...-.-.+.+...|.++.-.+|..
T Consensus 239 s~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~ 318 (1128)
T COG5098 239 SGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCC 318 (1128)
T ss_pred HHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHH
Confidence 5666666666654312233333334455554321111 11 1223334456777666555566778888888888888
Q ss_pred HHHHHHHHHHhhcCC--------CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHh
Q 002877 112 SAQVIAKIASIEIPQ--------KQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQ 183 (872)
Q Consensus 112 ~~~~l~~i~~~~~p~--------~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~ 183 (872)
.-++.+.++.+-... ++..+++..+.+.+++. .|-.|.-|++++..+++.-. .. ...-..+...+..
T Consensus 319 ~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~--~py~RtKalqv~~kifdl~s--k~-~~~r~ev~~lv~r 393 (1128)
T COG5098 319 FLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT--YPYTRTKALQVLEKIFDLNS--KT-VGRRHEVIRLVGR 393 (1128)
T ss_pred HHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHhCcc--cc-cchHHHHHHHHHH
Confidence 888887776542211 14567888888888888 89999999999999998742 22 4455667778888
Q ss_pred cccCCCCCHHHHHHHHHHHHHHH
Q 002877 184 GMNLAEHSAEVRLAATRALYNAL 206 (872)
Q Consensus 184 ~l~~~~~~~~vr~~al~~l~~~~ 206 (872)
.++| -+.-||..|++.+..++
T Consensus 394 ~lqD--rss~VRrnaikl~SkLL 414 (1128)
T COG5098 394 RLQD--RSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred Hhhh--hhHHHHHHHHHHHHHHH
Confidence 8988 67899999999998876
No 158
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.91 E-value=0.058 Score=54.23 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=114.7
Q ss_pred CcchHHHHH-HHHHHhhc-CCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHH
Q 002877 381 DWRCREAAT-YAFGSVLE-GPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQR 458 (872)
Q Consensus 381 ~~~~r~aal-~~l~~i~~-~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (872)
.|+...+.. ..+..+.. ......+..+.+-++|.++..++|.++.+|..++.++..+.+..+... .+........+-
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-~~~L~~tGl~~v 166 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-WDILRRTGLFSV 166 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-hHHHHHcChHHH
Confidence 576554322 34444433 444466788899999999999999999999999999999998776511 000011123444
Q ss_pred HHHHHHHHhh--------c-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHH-HHHHHhhccCCC-cchhHHHHH
Q 002877 459 ILTVLLESIK--------D-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSII-AELLRAADRTDV-GGSKLRSAA 527 (872)
Q Consensus 459 ~l~~l~~~l~--------d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il-~~l~~~l~~~~~-~~~~vr~~a 527 (872)
+.+++..++. + ...+-..+..++..++......+ ...-...+..++ ..++..+..... ....++...
T Consensus 167 ~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~--~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 167 FEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDD--SNPRSTWLDKILREGILSSMEHESSFSYPRLRTVL 244 (282)
T ss_pred HHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCC--cccchHHHHHHHHHHHhhhceeccccCchhHHHHH
Confidence 4555556654 3 56677788888888876542111 122223333333 336665543331 235678999
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Q 002877 528 YETLNEVVRCSNITETSQIIAELLPAIMGRLG 559 (872)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~ 559 (872)
++.+..+++..| .....|+..++|.+.+.+.
T Consensus 245 l~~l~~~i~~lG-i~~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 245 LQQLPPIIDELG-ISSVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhc
Confidence 999999999999 8889999999999887665
No 159
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.90 E-value=0.023 Score=51.70 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=107.2
Q ss_pred hHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHH
Q 002877 405 APLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIY 482 (872)
Q Consensus 405 ~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~ 482 (872)
+..+..+...+.+.+.++++.-|+.++..++..++..+.+ ........-+..+++.++. .+.+...++.++.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e------~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE------ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLT 93 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3457788888999999999999999999999988876321 3334567778888888876 6778899999999
Q ss_pred HHHHhhcc-CCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q 002877 483 YLAQGYED-AGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMG 556 (872)
Q Consensus 483 ~l~~~~~~-~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~ 556 (872)
.+.....+ ++...+...|.++.+++.+++.++. ..+...+++++..++...+ ..+.|+..++-..+..
T Consensus 94 ~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~p-tt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 94 RLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLPHHP-TTFRPFANKIESALLS 162 (165)
T ss_pred HHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHCC-ccccchHHHHHHHHHH
Confidence 99987653 2223455678999999999998873 2347899999999999998 7777777665554443
No 160
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.85 E-value=0.82 Score=48.22 Aligned_cols=274 Identities=12% Similarity=0.053 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhh--HHHhhhHHHHHH
Q 002877 578 LQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR-SSTVHEEAMLAIGALAYATGP--EFAKYMPEFYQY 654 (872)
Q Consensus 578 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~--~~~~~l~~i~~~ 654 (872)
+...++..+..++..-... ......+.+++-+...+.+. +......++.+++.+...-.- .|.. .+.++.
T Consensus 117 i~~~a~~iLt~l~~~~~~~-----~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~ 189 (429)
T cd00256 117 IVHMSFSILAKLACFGLAK-----MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPT 189 (429)
T ss_pred HHHHHHHHHHHHHhcCccc-----cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHH
Confidence 4455666666665422111 12223344556666666554 355666677788777653321 1211 224555
Q ss_pred HHhhhcccc-hHhHHHHHHHHHHHHHHHh-cCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccc--hh
Q 002877 655 LQMGLQNSE-EYQVCAITVGVVGDVCRAL-DDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVH--FE 730 (872)
Q Consensus 655 l~~~l~~~~-~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~ 730 (872)
|...++... +.+..-.++-++-.++-.. ....... ..+++.+.++++... -..+-..++.++-++.....+. -.
T Consensus 190 L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 190 LVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKK 267 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhh
Confidence 555554432 3344444444443332111 1111111 367888888887652 2233345566666666543110 11
Q ss_pred hhHHHHH----HHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccch-----------------h------h
Q 002877 731 KYVPHAL----QMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKS-----------------A------R 783 (872)
Q Consensus 731 ~~l~~i~----~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------~------~ 783 (872)
.+...++ +.+++.++. ..-.|+|..+-...+++..-+.+.. +.+..+ . .
T Consensus 268 ~~~~~mv~~~l~~~l~~L~~---rk~~DedL~edl~~L~e~L~~~~k~-ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN 343 (429)
T cd00256 268 TAALQMVQCKVLKTLQSLEQ---RKYDDEDLTDDLKFLTEELKNSVQD-LSSFDEYKSELRSGRLHWSPVHKSEKFWREN 343 (429)
T ss_pred hHHHHHHHcChHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHhcCCccCCCCCCCchHHHHH
Confidence 1222222 222233322 2223444433333333322221111 111110 0 1
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 002877 784 AEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQ 863 (872)
Q Consensus 784 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~ 863 (872)
...|...--.+++.|.+++..+ .++.+-..|+.=||++++.++.... ....--.+..+-+.+.++|++||--|--|.
T Consensus 344 ~~kf~~~~~~llk~L~~iL~~s-~d~~~laVAc~Dige~vr~~P~gr~--i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 344 ADRLNEKNYELLKILIHLLETS-VDPIILAVACHDIGEYVRHYPRGKD--VVEQLGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHHHhcchHHHHHHHHHHhcC-CCcceeehhhhhHHHHHHHCccHHH--HHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2223333355667777777433 4566666778889999999865421 111111344555568899999999999888
Q ss_pred HHHH
Q 002877 864 GMIN 867 (872)
Q Consensus 864 ~~~~ 867 (872)
+.++
T Consensus 421 Qklm 424 (429)
T cd00256 421 QKLM 424 (429)
T ss_pred HHHH
Confidence 8764
No 161
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.80 E-value=0.055 Score=58.54 Aligned_cols=252 Identities=15% Similarity=0.155 Sum_probs=152.5
Q ss_pred cHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 002877 146 LAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKV 225 (872)
Q Consensus 146 ~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~ 225 (872)
+...+..-...|....+.+ ++- -....++|.++..+.-.+ ++-..+..++.. ...++...+...+++.
T Consensus 267 s~~eK~~Ff~~L~~~l~~~-pe~---i~~~kvlp~Ll~~~~~g~-------a~~~~ltpl~k~-~k~ld~~eyq~~i~p~ 334 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLDNF-PEE---IIASKVLPILLAALEFGD-------AASDFLTPLFKL-GKDLDEEEYQVRIIPV 334 (690)
T ss_pred cHHHHHHHHHHHHHHHhhh-hHH---HHHHHHHHHHHHHhhccc-------cchhhhhHHHHh-hhhccccccccchhhh
Confidence 3445544444444444443 221 135567777776665421 222222222221 1123333344558899
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCC
Q 002877 226 VCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETG 305 (872)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 305 (872)
+.++...+|..+|...++-+..++....+.. .-..+++.+...+.|.++-+|.+++.++..++..-.
T Consensus 335 l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~----------- 401 (690)
T KOG1243|consen 335 LLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS----------- 401 (690)
T ss_pred HHHHhcCcchHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-----------
Confidence 9999999999999888877777665543321 223689999999999999999999998888876411
Q ss_pred CCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchh-chHHHHHhhccCCCcch
Q 002877 306 DSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVP-LVMPFVEANIVKSDWRC 384 (872)
Q Consensus 306 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~l~~~~~~~ 384 (872)
+..+. .-++..+...-.|++ -..|.-...|++.++......... .+...+...+.|+-...
T Consensus 402 ----------~~~Ln---~Ellr~~ar~q~d~~-----~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~pa 463 (690)
T KOG1243|consen 402 ----------KRNLN---GELLRYLARLQPDEH-----GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPA 463 (690)
T ss_pred ----------hhhhc---HHHHHHHHhhCcccc-----CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCc
Confidence 11111 112222322211211 334554455777766654322222 22233344566777778
Q ss_pred HHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 385 REAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 385 r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
|.+++.++.+..+... ....-.+++|.+....-|++..||..|..++..+...+.+
T Consensus 464 R~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 464 RKAGVLALAATQEYFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhhhHHHhhcccccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 9999999988877553 2223347888888888999999999999999888776665
No 162
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.80 E-value=0.87 Score=47.68 Aligned_cols=279 Identities=20% Similarity=0.214 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHH
Q 002877 37 GFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVI 116 (872)
Q Consensus 37 ~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l 116 (872)
..+..+...+.++ +..+|..|+..+...=. ......+...+.+.++.+|..++.++
T Consensus 43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~----------------------~~av~~l~~~l~d~~~~vr~~a~~aL 98 (335)
T COG1413 43 EAADELLKLLEDE--DLLVRLSAAVALGELGS----------------------EEAVPLLRELLSDEDPRVRDAAADAL 98 (335)
T ss_pred hhHHHHHHHHcCC--CHHHHHHHHHHHhhhch----------------------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4566777777763 78899988877643211 12344677888899999999999976
Q ss_pred HHHHHhhcCCCCchHHHHHHHHhhc-cCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCC------
Q 002877 117 AKIASIEIPQKQWPELIRSLLNNMT-QQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAE------ 189 (872)
Q Consensus 117 ~~i~~~~~p~~~~~~ll~~l~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~------ 189 (872)
+.+ .-+.-++.++..+. ++ +..+|..+...|+.+-..- . +..++..+++..
T Consensus 99 g~~--------~~~~a~~~li~~l~~d~--~~~vR~~aa~aL~~~~~~~--------a----~~~l~~~l~~~~~~~a~~ 156 (335)
T COG1413 99 GEL--------GDPEAVPPLVELLENDE--NEGVRAAAARALGKLGDER--------A----LDPLLEALQDEDSGSAAA 156 (335)
T ss_pred Hcc--------CChhHHHHHHHHHHcCC--cHhHHHHHHHHHHhcCchh--------h----hHHHHHHhccchhhhhhh
Confidence 654 33456677777777 46 7889999999998765532 1 222233333311
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 002877 190 ----HSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFE 265 (872)
Q Consensus 190 ----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (872)
+...+|..++..+..+-. +.....+...+.+.+..+|..+...+..+.... ..+..
T Consensus 157 ~~~~~~~~~r~~a~~~l~~~~~------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~ 216 (335)
T COG1413 157 ALDAALLDVRAAAAEALGELGD------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAAD 216 (335)
T ss_pred hccchHHHHHHHHHHHHHHcCC------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHH
Confidence 223577777777775311 114455666777778899999999998876543 33445
Q ss_pred HHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcc
Q 002877 266 LTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWN 345 (872)
Q Consensus 266 ~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~ 345 (872)
.+.....+++..+|..++.-+..+...+ -.+.+...+...+ |.
T Consensus 217 ~l~~~~~~~~~~vr~~~~~~l~~~~~~~----------------------------~~~~l~~~l~~~~---------~~ 259 (335)
T COG1413 217 LLVKALSDESLEVRKAALLALGEIGDEE----------------------------AVDALAKALEDED---------VI 259 (335)
T ss_pred HHHHHhcCCCHHHHHHHHHHhcccCcch----------------------------hHHHHHHHHhccc---------hH
Confidence 5566678889999988876554443221 1112222222111 44
Q ss_pred hhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHH
Q 002877 346 ISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNH 425 (872)
Q Consensus 346 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~ 425 (872)
++..+...+. +.. .......+...+.+..|..|..+...++.+..... ....+....+....
T Consensus 260 ~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~a~~~~~~~~~~~ 321 (335)
T COG1413 260 LALLAAAALG------ALD-LAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA-----------VAALLLALEDGDAD 321 (335)
T ss_pred HHHHHHHHhc------ccC-chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-----------HHHHHHHhcCCchh
Confidence 4433322222 111 12223334445567788899888888888776542 12334455667777
Q ss_pred HHHHHHHHHHH
Q 002877 426 VKDTTAWTLSR 436 (872)
Q Consensus 426 vr~~a~~~l~~ 436 (872)
+|..+......
T Consensus 322 ~~~~~~~~~~~ 332 (335)
T COG1413 322 VRKAALILLEG 332 (335)
T ss_pred hHHHHHHHHHh
Confidence 77777666543
No 163
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.77 E-value=0.0028 Score=38.60 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 002877 840 CNDFMSECLRSDDEQLKETAGWTQGMINRVL 870 (872)
Q Consensus 840 v~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 870 (872)
++.+++ ++.|++++||.+|++++|.+++.+
T Consensus 2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQ-LLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHH-HHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHhhC
Confidence 456666 489999999999999999999863
No 164
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.76 E-value=0.9 Score=48.11 Aligned_cols=241 Identities=15% Similarity=0.051 Sum_probs=148.8
Q ss_pred HHHHHHHhhc-CCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccch
Q 002877 93 VKDLLLRTLA-SPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQ 171 (872)
Q Consensus 93 i~~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~ 171 (872)
....++..|. ++++.++..++..+.. . .-+..+..+++.+.++ ++.+|..+...|+.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~-----~~~~~~~~L~~~L~d~--~~~vr~aaa~ALg~i~---------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---Q-----EDALDLRSVLAVLQAG--PEGLCAGIQAALGWLG---------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---c-----CChHHHHHHHHHhcCC--CHHHHHHHHHHHhcCC----------
Confidence 3456777774 5667776654443321 1 1223478999999888 7889999999996432
Q ss_pred hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Q 002877 172 DEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 172 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (872)
.+...+.+...+.+ .++.||..++.++...- . + -.+.+...+++.++.++..++.++..+-..
T Consensus 115 --~~~a~~~L~~~L~~--~~p~vR~aal~al~~r~----~--~-------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 115 --GRQAEPWLEPLLAA--SEPPGRAIGLAALGAHR----H--D-------PGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred --chHHHHHHHHHhcC--CChHHHHHHHHHHHhhc----c--C-------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 22344556667776 67899999997776511 0 0 123455566789999999999999887532
Q ss_pred hhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHh
Q 002877 252 YYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLL 331 (872)
Q Consensus 252 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 331 (872)
...+.+.....+.++++|..|+.-+..+.... -.+.+....+
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~----------------------------A~~~l~~~~~ 219 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRL----------------------------AWGVCRRFQV 219 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHh----------------------------HHHHHHHHHh
Confidence 12222334478899999999997665554310 1112222111
Q ss_pred cccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhH
Q 002877 332 KQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG 411 (872)
Q Consensus 332 ~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l 411 (872)
..+ +..+..+...+... + .+..++.+...+.++. +|..++.++|.+... ..
T Consensus 220 ~~g---------~~~~~~l~~~lal~----~---~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p-----------~a 270 (410)
T TIGR02270 220 LEG---------GPHRQRLLVLLAVA----G---GPDAQAWLRELLQAAA--TRREALRAVGLVGDV-----------EA 270 (410)
T ss_pred ccC---------ccHHHHHHHHHHhC----C---chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc-----------ch
Confidence 111 22222222222211 2 1245566666666544 889999999987652 34
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 002877 412 FDFLLNAMRDENNHVKDTTAWTLSRIFE 439 (872)
Q Consensus 412 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 439 (872)
++.+++.+.|+. ++..|-.++.++..
T Consensus 271 v~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 271 APWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 677788887655 99999999988875
No 165
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.76 E-value=0.38 Score=50.83 Aligned_cols=241 Identities=10% Similarity=-0.039 Sum_probs=144.1
Q ss_pred HHHHHHHHhhc-cCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 002877 131 ELIRSLLNNMT-QQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFA 209 (872)
Q Consensus 131 ~ll~~l~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 209 (872)
..++.+...+. ++ ++.++..+...+. ... -...+..+...+.+ .+..||..+.++|+.+-
T Consensus 54 ~a~~~L~~aL~~d~--~~ev~~~aa~al~----~~~--------~~~~~~~L~~~L~d--~~~~vr~aaa~ALg~i~--- 114 (410)
T TIGR02270 54 AATELLVSALAEAD--EPGRVACAALALL----AQE--------DALDLRSVLAVLQA--GPEGLCAGIQAALGWLG--- 114 (410)
T ss_pred hHHHHHHHHHhhCC--ChhHHHHHHHHHh----ccC--------ChHHHHHHHHHhcC--CCHHHHHHHHHHHhcCC---
Confidence 45566666674 33 4555544444332 110 11136667778877 67789999999998631
Q ss_pred HhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHH
Q 002877 210 LTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSI 289 (872)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l 289 (872)
. +.....+...+.+.++.+|..++..+...-.. -.+.+...+++.++.++..|+..+..+
T Consensus 115 -~--------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 115 -G--------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred -c--------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 1 12455667777888999998888666552111 122334455789999999999877766
Q ss_pred hHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhch
Q 002877 290 CDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLV 369 (872)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l 369 (872)
.... .+|.+...+. ++| -.+|.+|...+..+.. ....
T Consensus 175 ~~~~----------------------------a~~~L~~al~--d~~-------~~VR~aA~~al~~lG~---~~A~--- 211 (410)
T TIGR02270 175 PRRL----------------------------SESTLRLYLR--DSD-------PEVRFAALEAGLLAGS---RLAW--- 211 (410)
T ss_pred cccc----------------------------chHHHHHHHc--CCC-------HHHHHHHHHHHHHcCC---HhHH---
Confidence 5421 1122222222 111 4689998888754422 2222
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcc
Q 002877 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFS 449 (872)
Q Consensus 370 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
+.+......+.+..+......++.. .. +..++.|...++|+. +|..+++++|++..
T Consensus 212 -~~l~~~~~~~g~~~~~~l~~~lal~---~~--------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---------- 267 (410)
T TIGR02270 212 -GVCRRFQVLEGGPHRQRLLVLLAVA---GG--------PDAQAWLRELLQAAA--TRREALRAVGLVGD---------- 267 (410)
T ss_pred -HHHHHHHhccCccHHHHHHHHHHhC---Cc--------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------
Confidence 3333322344554444444444333 11 156777788888765 99999999998752
Q ss_pred ccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 002877 450 VISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLA 485 (872)
Q Consensus 450 ~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~ 485 (872)
+..++.|+..+.+. .++..|-.++..+.
T Consensus 268 -------p~av~~L~~~l~d~-~~aR~A~eA~~~It 295 (410)
T TIGR02270 268 -------VEAAPWCLEAMREP-PWARLAGEAFSLIT 295 (410)
T ss_pred -------cchHHHHHHHhcCc-HHHHHHHHHHHHhh
Confidence 33566777777753 48888888888876
No 166
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.72 E-value=1.2 Score=48.21 Aligned_cols=431 Identities=14% Similarity=0.065 Sum_probs=214.6
Q ss_pred ChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcC--CChhHhhHHHHHHHHHHHhhcCCCCc
Q 002877 52 PTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLAS--PVPEARHTSAQVIAKIASIEIPQKQW 129 (872)
Q Consensus 52 ~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~--~~~~vr~~~~~~l~~i~~~~~p~~~~ 129 (872)
+++..-.|....+|.+..+...+. .-.+-.--+.|+..+.. +...+.+..+.++...+..+ +...
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~-----------~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e--qd~v 88 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKE-----------TNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE--QDKV 88 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccc-----------hhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc--cchH
Confidence 566656677888887754432111 11111122344555544 34666677888888888665 1222
Q ss_pred -----hHHHHHHHHhhccCCcc-HHHHHHHHHHHHHhhhccC--ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHH
Q 002877 130 -----PELIRSLLNNMTQQDSL-AALKQATLETLGYVCEEIS--HQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRA 201 (872)
Q Consensus 130 -----~~ll~~l~~~l~~~~~~-~~~r~~al~~l~~l~~~~~--~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~ 201 (872)
...++.+++.++++ + ...++..+.++..+++... +... ..+...+++.+...+..+ .....+.-+..
T Consensus 89 ~svL~~~~ll~Ll~LLs~s--D~~~~le~~l~~lR~Ifet~~~q~~~~-s~~~~sIi~~~s~l~s~~-lk~~~~l~~~~- 163 (678)
T KOG1293|consen 89 DSVLRIIELLKLLQLLSES--DSLNVLEKTLRCLRTIFETSKYQDKKM-SLHLKSIIVKFSLLYSIE-LKYISRLDVSR- 163 (678)
T ss_pred HHHHHHhhHHHHHHHhcCc--chHhHHHHHHHHHHHHHhcccccccch-hhhHHHHHHHHHHHHhhh-hhhhhhhhhhh-
Confidence 23577889999888 6 6789999999999988752 2334 567777777776666521 01011111111
Q ss_pred HHHHHHHHHhhhhhhh--HHHHHHHHHHHhhcCCcHHHHHHHHHHHH---HHHHhhhhhhHHhHH-----HHHH--HHHH
Q 002877 202 LYNALDFALTNFQNEM--ERNYIMKVVCETAKSKEVEIRQAAFECLV---SIASTYYEVLEPYMQ-----TLFE--LTSN 269 (872)
Q Consensus 202 l~~~~~~~~~~~~~~~--~~~~ll~~l~~~~~~~~~~~~~~~~~~l~---~l~~~~~~~~~~~l~-----~l~~--~~~~ 269 (872)
+.+....-+.+. ....+.+.+.-+........|.+++.++. .++...+..--..+. .+.+ ....
T Consensus 164 ----~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~r 239 (678)
T KOG1293|consen 164 ----AAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTR 239 (678)
T ss_pred ----hccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhh
Confidence 101111000000 00012222222222335678889999988 544433322111111 1222 2233
Q ss_pred HhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhh-HH-HHHHHHhcccCCcccCCCCcchh
Q 002877 270 AVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSL-VP-MLLETLLKQEEDQDQDDSIWNIS 347 (872)
Q Consensus 270 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~-~l~~~l~~~~~d~~~d~~~~~~r 347 (872)
..++++.+.+..++.++..+.+..... +...+ +.+.-++.... +. .+...+.++ .|+.-
T Consensus 240 L~k~~~~s~~l~sl~cl~~~~~~s~~~-------d~l~~---~~~~~dmgd~~i~q~~~i~l~~~P---------~~s~l 300 (678)
T KOG1293|consen 240 LLKDPDFSERLRSLECLVPYLRKSFNY-------DPLPW---WFIFFDMGDSLIVQYNCIVLMNDP---------GLSTL 300 (678)
T ss_pred hhhCCCccHHHHHHHHHHHHHhccccc-------ccccc---ceeeccCchHHHHHHhhheeecCC---------ceeeh
Confidence 446677777778888777777653211 00000 00111111111 11 111111111 12111
Q ss_pred hhH--HHHHH-HHHhhcC-----CcchhchHHHHHhh--ccCCCcchHHHHHH---HHHHhhcCCCccchhHhHH--hHH
Q 002877 348 MAG--GTCLG-LVARTVG-----DEVVPLVMPFVEAN--IVKSDWRCREAATY---AFGSVLEGPTIDKLAPLVH--AGF 412 (872)
Q Consensus 348 ~~a--~~~l~-~l~~~~~-----~~~~~~l~~~l~~~--l~~~~~~~r~aal~---~l~~i~~~~~~~~~~~~l~--~l~ 412 (872)
..+ .-|+. .+.+... ....+....++..+ +.....+.|.-++. .+...+.+.. ...+.++. .+.
T Consensus 301 ~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~-i~~~k~~l~~~t~ 379 (678)
T KOG1293|consen 301 DHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE-ISLKKEILETTTE 379 (678)
T ss_pred hhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc-hhHHHHHHHHHHH
Confidence 111 11111 1222221 22233333333222 22334444443321 2222222221 22222222 222
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC
Q 002877 413 DFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA 491 (872)
Q Consensus 413 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (872)
..+....-..+..++.+|+.++-.++.......+ +.--..++..+++.+.+ ...|...+..++.+++-.+
T Consensus 380 ~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~t------g~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef--- 450 (678)
T KOG1293|consen 380 SHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRT------GLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF--- 450 (678)
T ss_pred HHHccccccccHHHHHHHHHHHHHHHHHHHHHHc------CCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc---
Confidence 2222223345667889999988777765553211 12334566777777788 8899999999999999887
Q ss_pred CCCCCCchhhH-HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 492 GPSSSLLSPYL-TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 492 ~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
++.-..|+ .+.++.+...+.+++ .++|..+.+++..+.-.+.
T Consensus 451 ---s~~kskfl~~ngId~l~s~~~~~~---~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 451 ---SNLKSKFLRNNGIDILESMLTDPD---FNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred ---ccHHHHHHHcCcHHHHHHHhcCCC---chHHHHHHHHHHHHHhcch
Confidence 33333333 467788888887555 5669999999999887765
No 167
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.62 E-value=1.4 Score=47.80 Aligned_cols=130 Identities=10% Similarity=0.073 Sum_probs=95.6
Q ss_pred hHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccc-----hhHhHHhHHHHHHHhcCCCc
Q 002877 349 AGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDK-----LAPLVHAGFDFLLNAMRDEN 423 (872)
Q Consensus 349 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~-----~~~~l~~l~~~l~~~l~d~~ 423 (872)
....++..+++..|.-.+.. +..+.+.+.+++...|.+.+-+.+.+......+. .++.+..++..+.+.+.|.+
T Consensus 281 ~islFl~kls~l~p~i~lrq-~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 281 DISLFLNKLSELSPGIMLRQ-YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHhhcCchHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 34556666666554333322 3456667788888899998888888776543222 33457788888999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 424 NHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
|.+|..|...+.++...-.. ....-..+......+++| ...||..|...+..+...
T Consensus 360 py~RtKalqv~~kifdl~sk--------~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSK--------TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred hHHHHHHHHHHHHHHhCccc--------ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999875543 223456778888889999 899999999999888754
No 168
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.61 E-value=1.5 Score=47.92 Aligned_cols=290 Identities=13% Similarity=0.123 Sum_probs=148.9
Q ss_pred HhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhcc---CCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhc
Q 002877 108 ARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQ---QDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQG 184 (872)
Q Consensus 108 vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~---~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~ 184 (872)
-|-.++.-+...+... +- +-++.++...++ ++...+.|+.++..+..+++.-. ... ...-..++..+...
T Consensus 6 ~R~~a~~~l~~~i~~~-~~----~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~-~~~-~~~R~~fF~~I~~~ 78 (464)
T PF11864_consen 6 ERIKAAEELCESIQKY-PL----SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD-SSS-GLMRAEFFRDISDP 78 (464)
T ss_pred HHHHHHHHHHHHHHhC-Cc----hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc-ccc-HHHHHHHHHHHhcC
Confidence 4555666666555433 32 333444433322 22245689999999999988742 111 12222333333222
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh----------c-------------CCcHHHHHHH
Q 002877 185 MNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETA----------K-------------SKEVEIRQAA 241 (872)
Q Consensus 185 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~-------------~~~~~~~~~~ 241 (872)
-.+ ++-..|..++.+|+.-..-+. .+..+. .+.+...+.... . +.+.......
T Consensus 79 ~~~--~d~~~~l~aL~~LT~~Grdi~-~~~~~i-~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 79 SND--DDFDLRLEALIALTDNGRDID-FFEYEI-GPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred CCc--hhHHHHHHHHHHHHcCCcCch-hcccch-HHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 111 345677778887765321111 011111 112222221111 0 1133344556
Q ss_pred HHHHHHHHHhhhhhhH-HhHHHHHHHHHHH-hcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH
Q 002877 242 FECLVSIASTYYEVLE-PYMQTLFELTSNA-VKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKAR 319 (872)
Q Consensus 242 ~~~l~~l~~~~~~~~~-~~l~~l~~~~~~~-~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (872)
+..+..+++.....+. ..+..++..+... .+...++.-..++.++.++..+.. +-...+
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~-------------------iP~~sl 215 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD-------------------IPSESL 215 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc-------------------CChHHH
Confidence 6666777666555444 4455555544333 233333334677888888877522 123344
Q ss_pred HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhh-cCCcchhchHHHHH--hhccCCCcchHHHHHHHHHHhh
Q 002877 320 SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVART-VGDEVVPLVMPFVE--ANIVKSDWRCREAATYAFGSVL 396 (872)
Q Consensus 320 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~-~~~~~~~~l~~~l~--~~l~~~~~~~r~aal~~l~~i~ 396 (872)
..++.+|....... +....+-+++..++.. .|...+..+..++. ..-..++...-.+|+..++.+.
T Consensus 216 ~~~i~vLCsi~~~~-----------~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 216 SPCIEVLCSIVNSV-----------SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLL 284 (464)
T ss_pred HHHHHHHhhHhccc-----------ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHH
Confidence 55666666553321 2344445566666643 24444555555551 1112234556678999998887
Q ss_pred cCCCccchhH-hHH--hHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 002877 397 EGPTIDKLAP-LVH--AGFDFLLNAMRDENNHVKDTTAWTLSRIF 438 (872)
Q Consensus 397 ~~~~~~~~~~-~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 438 (872)
-+.+.+.+.. ... .+++.+...++..++.|-.....++.++.
T Consensus 285 ~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 285 WGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred hccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 6653222221 122 48899999998888888777777766666
No 169
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=1.6 Score=48.23 Aligned_cols=352 Identities=13% Similarity=0.120 Sum_probs=185.5
Q ss_pred chhhhHHHHHHHHHhhcCCcchhchHHHHHhhc-cC-CCcchHHHHHHHHHHhhcCCC-c---------cchhH-----h
Q 002877 345 NISMAGGTCLGLVARTVGDEVVPLVMPFVEANI-VK-SDWRCREAATYAFGSVLEGPT-I---------DKLAP-----L 407 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l-~~-~~~~~r~aal~~l~~i~~~~~-~---------~~~~~-----~ 407 (872)
.-|+.|...|+.+++.+...+...-++.+.+-+ +| .+...-..++-.+..+...-. + +.+.. +
T Consensus 38 eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~f 117 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQF 117 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHH
Confidence 348899999999999886544333222222222 22 234444455544444433210 0 11111 1
Q ss_pred HH--hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHH
Q 002877 408 VH--AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYL 484 (872)
Q Consensus 408 l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l 484 (872)
+. ..+..+++.+..-+-.||.++...++.+...-+.+. -..--..|.-+..++..+.| ...+|..+...+..+
T Consensus 118 ik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~----q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL 193 (970)
T KOG0946|consen 118 IKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL----QDALLVSPMGISKLMDLLRDSREPIRNEAILLLSEL 193 (970)
T ss_pred HcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH----HHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHH
Confidence 22 556778888888899999999999999987665410 00011234455667777888 888999999999999
Q ss_pred HHhhccCCCCCCCchh--hHHHHHHHHHHhhccCCC-cchhHHHHHHHHHHHHHhcCCCcccHHHHH--HHHHHHHHHHH
Q 002877 485 AQGYEDAGPSSSLLSP--YLTSIIAELLRAADRTDV-GGSKLRSAAYETLNEVVRCSNITETSQIIA--ELLPAIMGRLG 559 (872)
Q Consensus 485 ~~~~~~~~~~~~~l~~--~~~~il~~l~~~l~~~~~-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--~l~~~l~~~l~ 559 (872)
.++. ..+.. .++++...|+..+..... +..-|-..++..+..+.+... .+. .++. ..+|.+...+.
T Consensus 194 ~k~n-------~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~-SNQ-~~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 194 VKDN-------SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI-SNQ-NFFREGSYIPRLLKLLS 264 (970)
T ss_pred HccC-------chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc-chh-hHHhccccHHHHHhhcC
Confidence 8875 22332 367888888888864332 222456677777777777544 221 2222 23444433222
Q ss_pred HHHhhhhcCcchhhhHHHHH-HHHHHHHHHHHHHcCCCccchhhchh------hHHHHHHHHHHHHccC--ChhHHHHHH
Q 002877 560 QTLELQIVSSDDREKQGDLQ-ASLCGVLQVIIQKFSSTDATKSFILQ------TADQIMVLFLRVFACR--SSTVHEEAM 630 (872)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~------~~~~l~~~l~~~l~~~--~~~v~~~a~ 630 (872)
. ..++++....+..-| .++..+|..+-.-+++. +++ .... .-..++..|+.++-++ ...++..++
T Consensus 265 ~----f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~-Nt~-~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 265 V----FEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPG-NTS-SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred c----ccccCcccccccHHHHHHHHHHHHHHHHhcCCC-CcH-HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 1 122221111122222 22233333332222221 122 1111 1125677788777766 457777888
Q ss_pred HHHHHHHHHhhh---HH----HhhhH----HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 002877 631 LAIGALAYATGP---EF----AKYMP----EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLN 699 (872)
Q Consensus 631 ~~l~~l~~~~~~---~~----~~~l~----~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 699 (872)
.+.+.+++.... .| .|+.+ .++-.+.........+..|.++..|+..+...-.+. -..++..+++
T Consensus 339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g----q~~~l~tllp 414 (970)
T KOG0946|consen 339 ITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG----QRKFLKTLLP 414 (970)
T ss_pred HHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh----HHHHHHHHhh
Confidence 888877765432 22 23333 223233333333445667888888876664322211 1244555555
Q ss_pred HhcCCCCCCCCchhHHHHHHH
Q 002877 700 ALSNSQLNRSVKPPILSCFGD 720 (872)
Q Consensus 700 ~l~~~~~~~~~~~~~~~~l~~ 720 (872)
.-.+.. +.++....+.+.+.
T Consensus 415 ~~~nst-~Nsl~ag~l~~~~l 434 (970)
T KOG0946|consen 415 SSTNST-SNSLSAGQLLLVGL 434 (970)
T ss_pred hhcccc-ccchhhhhHHHHhh
Confidence 443332 44555555555554
No 170
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.14 Score=51.05 Aligned_cols=145 Identities=16% Similarity=0.150 Sum_probs=98.0
Q ss_pred CCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH-
Q 002877 379 KSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL- 456 (872)
Q Consensus 379 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~- 456 (872)
+.+...|+.++.-|..+++... .. ...++ ..+..++..+++.++.+|..|+|++|..+..-+. .....+
T Consensus 94 s~~le~ke~ald~Le~lve~iD-nA-ndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~-------~Qe~v~E 164 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDID-NA-NDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPK-------SQEQVIE 164 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-hH-HhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHH-------HHHHHHH
Confidence 3467889999999988888763 22 22333 5566677799999999999999999999876653 111111
Q ss_pred HHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHH-HHHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 002877 457 QRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLT-SIIAELLRAADRTDVGGSKLRSAAYETLNE 533 (872)
Q Consensus 457 ~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~-~il~~l~~~l~~~~~~~~~vr~~a~~al~~ 533 (872)
...+..|+..+.. .-.+|..|..|++.+.++. +.....++. .=...|...+++.+ .+..+++.++..++.
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~------~~g~~~fl~~~G~~~L~~vl~~~~-~~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNN------KPGQDEFLKLNGYQVLRDVLQSNN-TSVKLKRKALFLLSL 237 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcC------cHHHHHHHhcCCHHHHHHHHHcCC-cchHHHHHHHHHHHH
Confidence 1245566666653 6678899999999999886 333333321 12445556665432 446678888888888
Q ss_pred HHhcCC
Q 002877 534 VVRCSN 539 (872)
Q Consensus 534 l~~~~~ 539 (872)
+.....
T Consensus 238 Ll~~~~ 243 (342)
T KOG2160|consen 238 LLQEDK 243 (342)
T ss_pred HHHhhh
Confidence 887665
No 171
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.56 E-value=0.05 Score=56.98 Aligned_cols=169 Identities=14% Similarity=0.179 Sum_probs=100.5
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC--------CChHHHHHHHHhHhHHhHhh
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG--------DEEAVALQAVEFWSSICDEE 293 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~~al~~l~~l~~~~ 293 (872)
.++-+.+.+.+.++..|..|+++|..= +-+..+++.++..+.+ .+-+.-...+.+...+.++.
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~TD---------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np 278 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLETD---------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP 278 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC---------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC
Confidence 444455555557889999999988652 2223333333322222 12223334444444444431
Q ss_pred hhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcc-cCCCCcchhhhHHHHHHHHHhhcCC---cchhch
Q 002877 294 IELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQD-QDDSIWNISMAGGTCLGLVARTVGD---EVVPLV 369 (872)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~-~d~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l 369 (872)
.-++.+|+-.++|-++.++....-... +.|..|.+|.-|+..+..++..+++ .+.+.+
T Consensus 279 ------------------~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Ri 340 (576)
T KOG2549|consen 279 ------------------NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRI 340 (576)
T ss_pred ------------------ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 236788888888888877654321111 1223499999999999999999974 345667
Q ss_pred HHHHHhhccCC--CcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHH
Q 002877 370 MPFVEANIVKS--DWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLN 417 (872)
Q Consensus 370 ~~~l~~~l~~~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~ 417 (872)
...+...+.|. .|..+++++.+|..+....-.-.+.+.+......+..
T Consensus 341 t~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~ 390 (576)
T KOG2549|consen 341 TRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQS 390 (576)
T ss_pred HHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhh
Confidence 77777777665 5889999999999887533212233344444433333
No 172
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.52 Score=51.04 Aligned_cols=205 Identities=10% Similarity=0.132 Sum_probs=131.2
Q ss_pred HhhhhcCChHHHHHHHHHHHHhhc-----CCChhHhhHHHHHHHHHHHhhcCCCCchHHH-----HHHHHhhccCCccHH
Q 002877 79 AKQWLAIDISYKSQVKDLLLRTLA-----SPVPEARHTSAQVIAKIASIEIPQKQWPELI-----RSLLNNMTQQDSLAA 148 (872)
Q Consensus 79 ~~~w~~l~~~~~~~i~~~Ll~~l~-----~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll-----~~l~~~l~~~~~~~~ 148 (872)
...|..-+-+..+.|.+-.++.+. .+...+..+.-++++.++..---.+.-.+++ |.+...++.+ |..
T Consensus 112 frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~--Ns~ 189 (1005)
T KOG1949|consen 112 FRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKAR--NSE 189 (1005)
T ss_pred HHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccC--chh
Confidence 356777666677777666665443 3445677777778887775431112334443 4556777888 888
Q ss_pred HHHHHHHHHHHhhhccCccccchhhHHHHH----HHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 002877 149 LKQATLETLGYVCEEISHQDLVQDEVNAVL----TAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMK 224 (872)
Q Consensus 149 ~r~~al~~l~~l~~~~~~~~l~~~~~~~l~----~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 224 (872)
+|..|+..+-.+.--.+|+.. ...++.++ ..+.+.+.| +-+.||..|++-+..+...+..-+......+ ++.
T Consensus 190 VrsnAa~lf~~~fP~~dpd~~-~e~mD~i~~kQf~~l~~LL~d--~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~-ll~ 265 (1005)
T KOG1949|consen 190 VRSNAALLFVEAFPIRDPDLH-AEEMDSIIQKQFEELYSLLED--PYPMVRSTAILGVCKITSKFWEMIPPTILID-LLK 265 (1005)
T ss_pred hhhhHHHHHHHhccCCCCCcc-HHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHHHcCHHHHHH-HHH
Confidence 999999988877766656654 44444444 456778888 7889999999988887654443333222111 333
Q ss_pred HHHH-hhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhH
Q 002877 225 VVCE-TAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICD 291 (872)
Q Consensus 225 ~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~ 291 (872)
.++. ...+...++|..+++++..++.... --+.++.+++-+-..+.|..+.+|.++.+.+..+-.
T Consensus 266 kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 266 KITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 3333 3345677999999999988875421 224455566655566778888898888777766643
No 173
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.46 E-value=0.034 Score=50.08 Aligned_cols=119 Identities=14% Similarity=0.233 Sum_probs=83.8
Q ss_pred hhh--HHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhhH---------------------------------HHhh
Q 002877 604 LQT--ADQIMVLFLRVFACR-SSTVHEEAMLAIGALAYATGPE---------------------------------FAKY 647 (872)
Q Consensus 604 ~~~--~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~---------------------------------~~~~ 647 (872)
.|| .|++++.++..++.. ++.+|.+++.++|.+...-+.. -..|
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHH
Confidence 455 468999999999877 6899999999999885321100 1112
Q ss_pred hH-HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHh
Q 002877 648 MP-EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALA 724 (872)
Q Consensus 648 l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~ 724 (872)
++ .++..|...+++..-..-...++.++-.+.+..+....+|+++++|.++..+... +...++..+.-++.+...
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~--~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC--PDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence 21 2344555555553323344577888888888888888999999999999999876 458888888777776653
No 174
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.37 E-value=1.2 Score=44.82 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhh-HHHhhhHHHHHHHHhhhc
Q 002877 583 CGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR-SSTVHEEAMLAIGALAYATGP-EFAKYMPEFYQYLQMGLQ 660 (872)
Q Consensus 583 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~ 660 (872)
..+|+.+.+.+... .+.....|+-..+...|-+|++.. ...|+..|+.....+....|. .+...++-..|.++..+.
T Consensus 29 is~L~kL~k~lq~~-~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~ 107 (307)
T PF04118_consen 29 ISFLGKLLKALQNS-NNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFS 107 (307)
T ss_pred HHHHHHHHHHHhcc-CCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHH
Confidence 34555555555410 111134455568889999999877 678999999999999988874 555555555555555554
Q ss_pred ccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccc
Q 002877 661 NSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVH 728 (872)
Q Consensus 661 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 728 (872)
.. ...||...+..+....-..+..+.|.+..++..++..+.++ ..+..+.++..+..+...+|+.
T Consensus 108 ~a-si~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede--~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 108 YA-SIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDE--GSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HH-HHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccC--CchHHHHHHHHHHHHHHhcChh
Confidence 42 45688888888888777777788899999999999999876 7888889999999999988876
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=0.12 Score=58.27 Aligned_cols=227 Identities=14% Similarity=0.133 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHH
Q 002877 238 RQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIE 316 (872)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (872)
|..|+.+|..++..-+-.+.--+. .+|++++..+++.-.++|..-.-.|..|..-.+..+.+...+.| ..|
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g------~~Y-- 558 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENG------YKY-- 558 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccC------cee--
Confidence 567777787777644333322222 58999999999988888876666777765432211111000000 000
Q ss_pred HhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC---C-cchhchHHHHHhhccCC-CcchHHHHHHH
Q 002877 317 KARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG---D-EVVPLVMPFVEANIVKS-DWRCREAATYA 391 (872)
Q Consensus 317 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~---~-~~~~~l~~~l~~~l~~~-~~~~r~aal~~ 391 (872)
++..+-| ...- . ..-|..|+=.|..+...++ + -+-..++.+..+.++++ +|-.|.=.+.|
T Consensus 559 -F~~vL~~---------~~~~-~----~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ic 623 (1387)
T KOG1517|consen 559 -FLQVLDP---------SQAI-P----PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCIC 623 (1387)
T ss_pred -EEEEecC---------cCCC-C----HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 0000111 0000 0 1346666777777777764 2 23456778888888884 79999999999
Q ss_pred HHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcc----------ccCcccHHHHHH
Q 002877 392 FGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFS----------VISPENLQRILT 461 (872)
Q Consensus 392 l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~----------~~~~~~~~~~l~ 461 (872)
||.+=+..........-...-..+...|.|+.|+||.+|..+||.+...... .|+.. .......+..+.
T Consensus 624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d-~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD-NFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc-ccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 9998776532222222224556778889999999999999999999876422 11000 000111233333
Q ss_pred ----HHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 462 ----VLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 462 ----~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
.++..++| .+-||.....++..++...
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 45566677 8888888778888777654
No 176
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.30 E-value=0.065 Score=44.40 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHcc----CChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHH
Q 002877 605 QTADQIMVLFLRVFAC----RSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 605 ~~~~~l~~~l~~~l~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 680 (872)
+++-.++..+-..+.+ .....|..++.+++.+.+..+..+..+.++++-.|...+.. ++++..|+.++..+.+
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~---~~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI---PELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHH
Confidence 3333444445555544 35677889999999999988888888888888888877764 3689999999999999
Q ss_pred Hhc-CCccccHHHHHHHHHHHhc
Q 002877 681 ALD-DKVLPFCDGIMSLLLNALS 702 (872)
Q Consensus 681 ~~~-~~~~~~~~~i~~~l~~~l~ 702 (872)
..+ +++.|.+++++..+++.+.
T Consensus 84 ~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 84 TLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HCCHHHHHHHHHHHHHHHHHhcc
Confidence 987 5778888888877777653
No 177
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.28 E-value=5.9 Score=51.16 Aligned_cols=193 Identities=16% Similarity=0.235 Sum_probs=115.3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccc
Q 002877 609 QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLP 688 (872)
Q Consensus 609 ~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 688 (872)
..+..++..+.+....+++.+...+++++...+..+.|++..........+.-+.-..+......-+..+......-..+
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~ 644 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISP 644 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHh
Confidence 45556677777777788888888899888776666677776666655544433222222222222233333333334667
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHH
Q 002877 689 FCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSI 768 (872)
Q Consensus 689 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 768 (872)
|..+++..+...+.++ +..+-..+..+++.+|...|.....+.+..++.+.+.+..... ..-|..+
T Consensus 645 ~v~~~l~~~~~~~~~~--~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~------------~~rr~as 710 (2341)
T KOG0891|consen 645 YVGPILLVLLPKLQDP--SSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSS------------LGKRLAA 710 (2341)
T ss_pred hcCchHHHHHHHHhcc--chhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhh------------hhchhHH
Confidence 8888888888888887 5677778999999999999977766666666666665442111 1234555
Q ss_pred HHHHHhHhhccchhhhhhhhhhH--HHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 002877 769 FEAYSGILQGFKSARAEVMMPYA--QHLLQFIELIFKDNHRDENVTKAAVAVMG 820 (872)
Q Consensus 769 ~~~~~~~~~~l~~~~~~~~~~~~--~~il~~l~~~~~~~~~~~~~~~~a~~~l~ 820 (872)
+.+...+...-+- .+.||. +.++..+...... .....+|..++..+|
T Consensus 711 lk~l~~l~s~~~~----~v~p~~~~P~ll~~l~~~~~t-e~~~~ir~~~v~~~g 759 (2341)
T KOG0891|consen 711 LKALGQLESSTGY----VVDPYLDYPELLDILINILKT-EQSSTIRREAIRLLG 759 (2341)
T ss_pred HHHhhhhhcccce----EecccccChHHHHHHHHHHhH-hhhhHHHHHHHHHhh
Confidence 5555554443322 133333 3334333322221 135677777787777
No 178
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.28 E-value=0.08 Score=55.51 Aligned_cols=133 Identities=8% Similarity=0.182 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhccc---chHhHHHHHHHHHHHHHHHhcC
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNS---EEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
+-.++.+.+.+...+...|+.|+..|.. ...+...++.++.++.+..... .+.+........+..+..+..-
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T-----DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET-----DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc-----CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 3445555556666788889988877654 2333444444555554444332 2333444444444444444445
Q ss_pred CccccHHHHHHHHHHHhcCCC--------CCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q 002877 685 KVLPFCDGIMSLLLNALSNSQ--------LNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 685 ~~~~~~~~i~~~l~~~l~~~~--------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~ 745 (872)
.+.||+.+++|.++.++-... -+|.+|..++..+..|+..++......-+.++..+.+.+.
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~ 349 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALL 349 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 688999999999998876432 2567999999999999998887655555555555555533
No 179
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.26 E-value=2.4 Score=46.40 Aligned_cols=411 Identities=9% Similarity=0.056 Sum_probs=190.8
Q ss_pred chhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCc-chHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCc
Q 002877 345 NISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDW-RCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDEN 423 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~-~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~ 423 (872)
+.|..+++-+......++-..++.++......+....+ ..|.+++..+..++.+.. ......=...+..+...-.+++
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~-~~~~~~R~~fF~~I~~~~~~~d 83 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD-SSSGLMRAEFFRDISDPSNDDD 83 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHhcCCCchh
Confidence 45666666666666666666667777777877766544 589999999998887653 2111111133334433333444
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-C------------------hH-----HHHHHHH
Q 002877 424 NHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-A------------------PN-----VAEKVCG 479 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~------------------~~-----v~~~a~~ 479 (872)
-..|-.|+.+|.+=++.+.. +...+.+.+...+.. - .. .....+.
T Consensus 84 ~~~~l~aL~~LT~~Grdi~~-----------~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDIDF-----------FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HHHHHHHHHHHHcCCcCchh-----------cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 55666676666654443321 122222222222211 0 00 0111112
Q ss_pred HHHHHHHhhccCCCCCCCch-hhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Q 002877 480 AIYYLAQGYEDAGPSSSLLS-PYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRL 558 (872)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~-~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l 558 (872)
-+-.+..++-. .+...+. ..+..++..+.....+... +.. -..++..+..++.... -..+-+..++..+....
T Consensus 153 ~ll~~l~nviK--fn~~~l~e~~i~~lv~~i~~iC~~Ts~-~~d-i~~~L~vldaii~y~~--iP~~sl~~~i~vLCsi~ 226 (464)
T PF11864_consen 153 DLLQFLVNVIK--FNFNYLDEDEISSLVDQICTICKSTSS-EDD-IEACLSVLDAIITYGD--IPSESLSPCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHhccCc-HHH-HHHHHHHHHHHHHcCc--CChHHHHHHHHHHhhHh
Confidence 22222222110 1133333 4566677766666443222 122 4677888888877432 11223333333333322
Q ss_pred HHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC------ChhHHHHHHHH
Q 002877 559 GQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR------SSTVHEEAMLA 632 (872)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~v~~~a~~~ 632 (872)
+. .++...+-.++.++++.- .....+..|+..+.+. +..+-..|+..
T Consensus 227 ~~---------------~~l~~~~w~~m~nL~~S~------------~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~ 279 (464)
T PF11864_consen 227 NS---------------VSLCKPSWRTMRNLLKSH------------LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFF 279 (464)
T ss_pred cc---------------cccchhHHHHHHHHHcCc------------cHHHHHHHHHHHHcccCccccccHHHHhhHHHH
Confidence 11 012233344555554221 2245667777777322 33455677888
Q ss_pred HHHHHHHhhhHHHhh--hH--HHHHHHHhhhcccchHhHHHHHHHHHHHHH-HHhcCC-ccccHHHHHHHHHHHhcC---
Q 002877 633 IGALAYATGPEFAKY--MP--EFYQYLQMGLQNSEEYQVCAITVGVVGDVC-RALDDK-VLPFCDGIMSLLLNALSN--- 703 (872)
Q Consensus 633 l~~l~~~~~~~~~~~--l~--~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~-~~~~~~-~~~~~~~i~~~l~~~l~~--- 703 (872)
++.+.-..+++-.|. +. .++|.+...++.... .+-...+.++..+. +.++.. ....++.++..+......
T Consensus 280 l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~-~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~ 358 (464)
T PF11864_consen 280 LRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP-RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQP 358 (464)
T ss_pred HHHHHhccccCCcceecccHHHHHHHHHHHHhCCCC-eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccc
Confidence 877766554332222 22 488888888875432 24444455555555 444432 223344444444433322
Q ss_pred CCCCCC---CchhHHHHHHHHHHhhcc-----chhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhH
Q 002877 704 SQLNRS---VKPPILSCFGDIALAIGV-----HFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGI 775 (872)
Q Consensus 704 ~~~~~~---~~~~~~~~l~~l~~~~~~-----~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 775 (872)
.....+ ........+.+++..+.. ++.---+.++..+.+..... -++....+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~l-----------------p~s~~~~vl-- 419 (464)
T PF11864_consen 359 FDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYL-----------------PDSSALLVL-- 419 (464)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccC-----------------CHHHHHHHH--
Confidence 111110 002333333333333211 12212334444444432211 111111111
Q ss_pred hhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 002877 776 LQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDL 822 (872)
Q Consensus 776 ~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l 822 (872)
.. -.+.+.+.-..+.+.+...+...+ .+..+.++|.-|+.++.++
T Consensus 420 ~~-~~~~~~Ps~~~W~~n~~~ll~~F~-~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 420 FY-EERSCSPSNPDWLDNLQKLLDRFY-NRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HH-HhcccCCCChHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHhhC
Confidence 00 000122222234566666777766 5567899999999988764
No 180
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.12 Score=50.22 Aligned_cols=125 Identities=15% Similarity=0.259 Sum_probs=91.6
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
..+...+..|++.++...--++..+.+++.+.++ .....+..++..+++.+.+ ...|...||.++..++..+
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e-------~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~l 160 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPE-------SLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL 160 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 5566677888999999999999999999988876 5566778888888888887 8889999999999999887
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 002877 489 EDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPA 553 (872)
Q Consensus 489 ~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~ 553 (872)
.+.+...+...+-.|+. +.+.++.-+|..+-.+|..++.... -...+..+.|.
T Consensus 161 ------n~~i~~~ld~lv~~Ll~---ka~~dnrFvreda~kAL~aMV~~vt---p~~~L~~L~~~ 213 (334)
T KOG2933|consen 161 ------NNSIDQELDDLVTQLLH---KASQDNRFVREDAEKALVAMVNHVT---PQKLLRKLIPI 213 (334)
T ss_pred ------HHHHHHHHHHHHHHHHh---hhcccchHHHHHHHHHHHHHHhccC---hHHHHHHHHHH
Confidence 44444434433333333 2233456679999999999998765 23344444444
No 181
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.44 Score=51.95 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHH
Q 002877 575 QGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR-SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQ 653 (872)
Q Consensus 575 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~ 653 (872)
..++|..+..+|+.++-.- +..++..+++|... ++.||-.+..++|-.+...|.. ..+.
T Consensus 568 nDDVrRaAVialGFVl~~d--------------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~------eAi~ 627 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRD--------------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK------EAIN 627 (929)
T ss_pred chHHHHHHHHHheeeEecC--------------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH------HHHH
Confidence 3467777777777654222 23445555566544 8899999999999877655532 2333
Q ss_pred HHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCC
Q 002877 654 YLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 654 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 704 (872)
.|.....+..+. ||+.|+-+++-|.....+...|-+..+-..+.+.+.+.
T Consensus 628 lLepl~~D~~~f-VRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 628 LLEPLTSDPVDF-VRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred HHhhhhcChHHH-HHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 333333444444 99999999999988888888899999988888888776
No 182
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.22 Score=48.36 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=121.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN 301 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 301 (872)
.++..+..+.+.+++....++..+..+...+++.+.+.+..++-.++..+++....+...|+..+..+.....
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln------- 161 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN------- 161 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-------
Confidence 4555566677789999999999999999999999999999998889999999888899999888877776521
Q ss_pred CCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhc-CCcchhchHHHHHhhccCC
Q 002877 302 PETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTV-GDEVVPLVMPFVEANIVKS 380 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~ 380 (872)
+.+.+.+..++- ..+....+| . --+|..|..+|..+.... |..+++.+.+. +.+.
T Consensus 162 -----------~~i~~~ld~lv~---~Ll~ka~~d----n--rFvreda~kAL~aMV~~vtp~~~L~~L~~~----~~~~ 217 (334)
T KOG2933|consen 162 -----------NSIDQELDDLVT---QLLHKASQD----N--RFVREDAEKALVAMVNHVTPQKLLRKLIPI----LQHS 217 (334)
T ss_pred -----------HHHHHHHHHHHH---HHHhhhccc----c--hHHHHHHHHHHHHHHhccChHHHHHHHHHH----Hhhh
Confidence 111222222222 222222211 1 457888889999888776 34444444444 5566
Q ss_pred CcchHHHHHHHHHHhhcCCC-ccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHH
Q 002877 381 DWRCREAATYAFGSVLEGPT-IDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWT 433 (872)
Q Consensus 381 ~~~~r~aal~~l~~i~~~~~-~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~ 433 (872)
+.+.|..+..++.......+ +....+++...++.+-+.+.|.-|.+|.+|-..
T Consensus 218 n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 218 NPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred chhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHH
Confidence 77777777766655443322 122334555777777777888877777665444
No 183
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.20 E-value=0.91 Score=48.46 Aligned_cols=231 Identities=14% Similarity=0.139 Sum_probs=147.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHh----cCCCChhHHHHHHHHHhhcccCCcccchHH
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQN---LPGFLLSLSVELV----NNEKPTESRRLAGIMLKNSLDAKDATTKED 77 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~---~~~~~~~l~~il~----~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~ 77 (872)
+.+++..+.|+|+.-|......|..+.... .+.....+..++. +......+-. ...++...++..
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~e-lLeil~sii~gf------- 206 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAE-LLEILGSIINGF------- 206 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHH-HHHHHHHHHTT--------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHH-HHHHHHHHHhcc-------
Confidence 567888889999999999999999977641 1233333333333 2222222222 233444444321
Q ss_pred HHhhhhcCChHHHHHHHHHHHHhhcCCC-hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHH
Q 002877 78 LAKQWLAIDISYKSQVKDLLLRTLASPV-PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLET 156 (872)
Q Consensus 78 ~~~~w~~l~~~~~~~i~~~Ll~~l~~~~-~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~ 156 (872)
-..+.++.+..+.+.|+.+...+. ......+..++..++..+ |. .-..++..++...-.. +......-+.-
T Consensus 207 ----~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~-l~~~~i~~llk~WP~t--~s~Kev~FL~e 278 (409)
T PF01603_consen 207 ----AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PS-LAEPVIKGLLKHWPKT--NSQKEVLFLNE 278 (409)
T ss_dssp -----SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GG-GHHHHHHHHHHHS-SS---HHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch-hHHHHHHHHHHhCCCC--CchhHHHHHHH
Confidence 124667888888888888887764 566888999999999887 42 4556677777766555 55555667788
Q ss_pred HHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH--HHHHHhhhhhhhHHHHHHHHHHHhh----
Q 002877 157 LGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNA--LDFALTNFQNEMERNYIMKVVCETA---- 230 (872)
Q Consensus 157 l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~~ll~~l~~~~---- 230 (872)
+..+++...++.+ ......++..+..++++ ++-.|-..|+..+.+- +..+..+ ...+++.++..+
T Consensus 279 l~~il~~~~~~~f-~~i~~~lf~~la~ci~S--~h~qVAErAl~~w~n~~~~~li~~~------~~~i~p~i~~~L~~~~ 349 (409)
T PF01603_consen 279 LEEILEVLPPEEF-QKIMVPLFKRLAKCISS--PHFQVAERALYFWNNEYFLSLISQN------SRVILPIIFPALYRNS 349 (409)
T ss_dssp HHHHHTT--HHHH-HHHHHHHHHHHHHHHTS--SSHHHHHHHHGGGGSHHHHHHHHCT------HHHHHHHHHHHHSSTT
T ss_pred HHHHHHhcCHHHH-HHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHCCHHHHHHHHhC------hHHHHHHHHHHHHHHH
Confidence 8888887765666 77788899999999988 7889999998877552 2222221 223455554443
Q ss_pred cCC-cHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 002877 231 KSK-EVEIRQAAFECLVSIASTYYEVLEPYM 260 (872)
Q Consensus 231 ~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~l 260 (872)
... +..+|..+..++..+.+..++.+....
T Consensus 350 ~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 350 KNHWNQTVRNLAQNVLKILMEMDPKLFDKCA 380 (409)
T ss_dssp SS-SSTTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 222 678999999999999888777765533
No 184
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=96.17 E-value=0.05 Score=48.62 Aligned_cols=131 Identities=7% Similarity=0.055 Sum_probs=91.0
Q ss_pred HHhhhHHHHHHHHhhhccc-----------------chHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCC
Q 002877 644 FAKYMPEFYQYLQMGLQNS-----------------EEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQL 706 (872)
Q Consensus 644 ~~~~l~~i~~~l~~~l~~~-----------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 706 (872)
+.|+++.++|.+..-+.-. +..++|.+|.+++..+.......+. +..+++.+...|.+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D--- 77 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD--- 77 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS---
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC---
Confidence 3577889999988655321 3457999999999999887655443 56778888888865
Q ss_pred CCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccc
Q 002877 707 NRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFK 780 (872)
Q Consensus 707 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 780 (872)
+.++|.-+...+.+++...+..+.+.++.+.+.+...+..+...+....| .|...+...+++.+...+-..+.
T Consensus 78 ~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE-~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 78 EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQE-IEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp -HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHH-HHHHHHHHHHHHHHHHHH-HSST
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCccccc-HHHHHHHHHHHHHHHHHHHHhCc
Confidence 57899999999999999989888889999999999988765433222222 34445667777887777745543
No 185
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.16 E-value=0.37 Score=46.29 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcc---------cchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 002877 630 MLAIGALAYATGPEFAKYMPEFYQYLQMGLQN---------SEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNA 700 (872)
Q Consensus 630 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~---------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 700 (872)
+....++..+-.-.+.||+.+++|.+..++-. .+...+|..|...++.....++......-+.+...+++.
T Consensus 257 ~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKa 336 (450)
T COG5095 257 VMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKA 336 (450)
T ss_pred HHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHH
Confidence 33344444444445679999999999887742 233458999999999999998877777778888888877
Q ss_pred hcCCCCCCCCchhHHHHHHHHHHh
Q 002877 701 LSNSQLNRSVKPPILSCFGDIALA 724 (872)
Q Consensus 701 l~~~~~~~~~~~~~~~~l~~l~~~ 724 (872)
+-+.+-.....-.++.+++-+...
T Consensus 337 fLD~~k~~sT~YGalkgls~l~ke 360 (450)
T COG5095 337 FLDREKTESTQYGALKGLSILSKE 360 (450)
T ss_pred HHhcccccchhhhhhhhhhhhchh
Confidence 665543455666777777766544
No 186
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.15 E-value=0.093 Score=47.92 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=94.1
Q ss_pred chhhhHHHHHHHHHhhcCCcchhc----------------hHHHHHhhccCCCcchHHHHHHHHHHhhcCCCc-------
Q 002877 345 NISMAGGTCLGLVARTVGDEVVPL----------------VMPFVEANIVKSDWRCREAATYAFGSVLEGPTI------- 401 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~~~~~~~~----------------l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~------- 401 (872)
++|.+|..||..+++..+...+-. --+.+.-.+.|++.+.|.+|+.++..+.++..+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 368888888888888844322211 122334445688999999999999999876430
Q ss_pred -----cchhH-------hHHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh
Q 002877 402 -----DKLAP-------LVHAGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK 468 (872)
Q Consensus 402 -----~~~~~-------~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 468 (872)
..+.+ .+.++-..++..++ ..++.+....++++..+....+. .....+.++.++..+...+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY-----~rL~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY-----HRLPPGLLTEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh-----hhcCHhHHHHHHHHHHHHHh
Confidence 01111 12233333444444 44677888889999999887775 23456778888888888888
Q ss_pred c-ChHHHHHHHHHHHHHHHh
Q 002877 469 D-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 469 d-~~~v~~~a~~al~~l~~~ 487 (872)
+ ++.|+..+..+++.+...
T Consensus 156 ~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 156 HRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred cCCCcHHHHHHHHHHHHHcC
Confidence 7 999999999999888754
No 187
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=7.8 Score=51.02 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=79.2
Q ss_pred HhhccCCccHHHHHHHHHHHHHhhhccC-ccccchhhHHHHHHHHHhcccCCC-------CCHHHHHHHHHHHHHHHHHH
Q 002877 138 NNMTQQDSLAALKQATLETLGYVCEEIS-HQDLVQDEVNAVLTAVVQGMNLAE-------HSAEVRLAATRALYNALDFA 209 (872)
Q Consensus 138 ~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~l~~~~~~~l~~~l~~~l~~~~-------~~~~vr~~al~~l~~~~~~~ 209 (872)
+.+.+.+.....|-.-+.-+....+... ++.+ . .+..++|.+++.+.+.+ +.-+.|..+++.+..+...
T Consensus 12 ~~l~d~~~~~~~klk~~~E~~~~le~~~~~~~~-~-~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~- 88 (3550)
T KOG0889|consen 12 RRLVDVNLPIESKLKMLVEIRDFLENLFSPESY-L-FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHN- 88 (3550)
T ss_pred HHhccCCCchHHHHHHHHHHHHHHHHhcChHHH-H-HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccH-
Confidence 4444542233344434444444444432 3333 3 67889999998887743 3457899999998876421
Q ss_pred HhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 002877 210 LTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTS 268 (872)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 268 (872)
+.+.. ...-++.++...+..++++...-+++++..+.+.+...+..+++.++.+++
T Consensus 89 -e~~~~--~~~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~ 144 (3550)
T KOG0889|consen 89 -EVFKP--FSQELLKVLMRVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIVI 144 (3550)
T ss_pred -HHHHH--HHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 11110 112367777888888899989999999999998888777777776665544
No 188
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.09 E-value=0.56 Score=48.06 Aligned_cols=166 Identities=10% Similarity=0.217 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchh
Q 002877 522 KLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKS 601 (872)
Q Consensus 522 ~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 601 (872)
.+|...+..+.+.++..+ +.......++|++++.+-.-.....- +-+ . ..++.++..++++++.
T Consensus 42 ~iKkeIL~Li~t~i~~~~--~~~~v~~~~i~~l~~~vL~DY~~~~p--~~r--~----~evL~l~~~ii~kl~~------ 105 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE--DPEEVANNFIPPLLDAVLGDYQNSVP--DAR--E----PEVLSLMATIINKLGE------ 105 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S---HHHHHHHTHHHHHHHHHHHHHHS-G--GGS-------HHHHHHHHHHHHHHGG------
T ss_pred HHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHhcCCc--ccc--C----hhHHHHHHHHHHHHHH------
Confidence 346778888888888776 33446677788877754333222111 111 1 2457888889998888
Q ss_pred hchhhHHHHHHHH----HHHHccC---ChhHHHHHHHHHHHHHHHhhhHHHh----hhHHHHHHHHhhhcccchHhHHHH
Q 002877 602 FILQTADQIMVLF----LRVFACR---SSTVHEEAMLAIGALAYATGPEFAK----YMPEFYQYLQMGLQNSEEYQVCAI 670 (872)
Q Consensus 602 ~~~~~~~~l~~~l----~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~----~l~~i~~~l~~~l~~~~~~~v~~~ 670 (872)
.+.++++.+++.+ +.++.+. -++.|..-+..+..+...+...+.. .+..++..+..++++. .+++...
T Consensus 106 ~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~ 184 (319)
T PF08767_consen 106 LIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISET 184 (319)
T ss_dssp GCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 6666666555544 4455543 4789999999999999887665543 3557777887777754 5679999
Q ss_pred HHHHHHHHHHHhcC--------CccccHHHHHHHHHHHhcCC
Q 002877 671 TVGVVGDVCRALDD--------KVLPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 671 a~~~l~~l~~~~~~--------~~~~~~~~i~~~l~~~l~~~ 704 (872)
++.++..+...... -+..|.-.++..++..+.++
T Consensus 185 ~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 185 GLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999998877643 12345556666667766655
No 189
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.04 E-value=0.09 Score=47.38 Aligned_cols=149 Identities=11% Similarity=0.167 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHH
Q 002877 502 LTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQAS 581 (872)
Q Consensus 502 ~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 581 (872)
++++++.++..+++. ++..+|..+++++|.+-.-.| |..+ .......... ..+.... .
T Consensus 8 yP~LL~~L~~iLk~e--~s~~iR~E~lr~lGilGALDP------~~~k-------~~~~~~~~~~-~~~~~~~---~--- 65 (160)
T PF11865_consen 8 YPELLDILLNILKTE--QSQSIRREALRVLGILGALDP------YKHK-------SIQKSLDSKS-SENSNDE---S--- 65 (160)
T ss_pred hHHHHHHHHHHHHhC--CCHHHHHHHHHHhhhccccCc------HHHh-------cccccCCccc-ccccccc---c---
Confidence 578999999999864 347789999999998866554 1111 0000000000 0000000 0
Q ss_pred HHHHHHHHHHHcCCCccchhhchhh-HHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhh
Q 002877 582 LCGVLQVIIQKFSSTDATKSFILQT-ADQIMVLFLRVFACR-SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGL 659 (872)
Q Consensus 582 ~~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 659 (872)
... .-.....+. ....| ..-.++.++..++++ -...+..++.++..+.+..+....+|+++++|.+...+
T Consensus 66 -~~~-~l~~~~~~~------~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 66 -TDI-SLPMMGISP------SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred -hhh-HHhhccCCC------chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHH
Confidence 000 001111111 12223 335778888888877 34455577888888888888888999999999999999
Q ss_pred cccchHhHHHHHHHHHHHHHHH
Q 002877 660 QNSEEYQVCAITVGVVGDVCRA 681 (872)
Q Consensus 660 ~~~~~~~v~~~a~~~l~~l~~~ 681 (872)
++.++ ..++..+..|+.++.-
T Consensus 138 ~~~~~-~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 138 RTCPD-SLREFYFQQLADLVSI 158 (160)
T ss_pred HhCCH-HHHHHHHHHHHHHHHH
Confidence 87655 6888888888887654
No 190
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=2.7 Score=44.88 Aligned_cols=241 Identities=14% Similarity=0.124 Sum_probs=140.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh---H--HHhhh---HHHHHHHHhhhcccchHhHHHHHHHHHHHHHH
Q 002877 609 QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP---E--FAKYM---PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 609 ~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~---~--~~~~l---~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 680 (872)
.++..++..++ +....+.|..++..+...... . +.+.+ +.++|...+.-...++.+-..+.+..+..+..
T Consensus 199 pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~e 276 (559)
T KOG2081|consen 199 PLITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGE 276 (559)
T ss_pred HHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence 45566666666 456677777777666544321 1 22211 23445555444445566656666666666655
Q ss_pred HhcCC---ccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc--------cchhhhHHHHHHHHHHHHHhccc
Q 002877 681 ALDDK---VLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG--------VHFEKYVPHALQMMQEAAKACAQ 749 (872)
Q Consensus 681 ~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~~l~~i~~~l~~~~~~~~~ 749 (872)
..-.. -..+.-.++..++-.-..+ +.++-+..+.....+....- .-|.||...++..+...++..++
T Consensus 277 af~~~i~~np~~~l~~vellLl~~~h~--~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~ 354 (559)
T KOG2081|consen 277 AFVVLISTNPEEFLRIVELLLLVAGHN--DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPD 354 (559)
T ss_pred HHHHHHhhCCCcchhHHHHHHHhccCC--chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCc
Confidence 44210 0112233444444444555 66787888888877765431 24677777777777777666553
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcc
Q 002877 750 LDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPN 829 (872)
Q Consensus 750 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 829 (872)
.+. -.|.++...+.|..+.+.+.....-+|.. ..++.+...+..++..++...+++.++.-+++++.+.
T Consensus 355 ~~~-l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~----------e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~ 423 (559)
T KOG2081|consen 355 QFD-LPEEESEFFEFRLKVGDVLKDVAFIIGSD----------ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPE 423 (559)
T ss_pred ccc-CccchhHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCcc
Confidence 322 11222233456666666665555544432 2233333333445578999999999999999998875
Q ss_pred hhhhccCchHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHh
Q 002877 830 TKLLFKDSSFCNDFMSE-CLRSDDEQLKETAGWTQGMINRVL 870 (872)
Q Consensus 830 ~~~~~~~~~~v~~ll~~-~~~~~~~~~~~~a~~~~~~~~~~~ 870 (872)
. .+.++..++. +.-.....+|.++.--+|.+.+.+
T Consensus 424 e------~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~ 459 (559)
T KOG2081|consen 424 E------NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWV 459 (559)
T ss_pred c------cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHH
Confidence 2 3456677666 223445559999999999998865
No 191
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.98 E-value=0.14 Score=42.06 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHccCC----hhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHH
Q 002877 605 QTADQIMVLFLRVFACRS----STVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 605 ~~~~~l~~~l~~~l~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 680 (872)
+++-.++..+-..+.+.+ ..-|..++.+++.+.+.++..+..+.++++-.|...+.. ++.+..|+.++..+.+
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~---~eL~~~al~~W~~~i~ 83 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI---PELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHHH
Confidence 344445555555555543 345888999999999999998888999999998888864 4599999999999999
Q ss_pred Hhc-CCccccHHHHHHHHHHHh
Q 002877 681 ALD-DKVLPFCDGIMSLLLNAL 701 (872)
Q Consensus 681 ~~~-~~~~~~~~~i~~~l~~~l 701 (872)
... +++.+.+++++..+++.+
T Consensus 84 ~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 84 TLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred hCCHHHHHHHHHHHHHHHHHhc
Confidence 986 456666677666666544
No 192
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.93 E-value=0.1 Score=49.92 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=54.1
Q ss_pred HHHHhHHhhHHHHHHHHhccc-CCcccCCCCcchhhhHHHHHHHHHhhcCC---cchhchHHHHHh-hccCC-CcchHHH
Q 002877 314 FIEKARSSLVPMLLETLLKQE-EDQDQDDSIWNISMAGGTCLGLVARTVGD---EVVPLVMPFVEA-NIVKS-DWRCREA 387 (872)
Q Consensus 314 ~~~~~l~~l~~~l~~~l~~~~-~d~~~d~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~-~l~~~-~~~~r~a 387 (872)
|..+|+.+++|-++.++.... ....+|.+.+.+|..|+..++..+..++. .+.|.+...+.. ++... -....++
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YG 349 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYG 349 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhh
Confidence 667777788887776654311 11112234478999999999999999873 445555444433 33322 2456788
Q ss_pred HHHHHHHhhcC
Q 002877 388 ATYAFGSVLEG 398 (872)
Q Consensus 388 al~~l~~i~~~ 398 (872)
|+.+++.+...
T Consensus 350 alkgls~l~ke 360 (450)
T COG5095 350 ALKGLSILSKE 360 (450)
T ss_pred hhhhhhhhchh
Confidence 99999888654
No 193
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.92 E-value=0.064 Score=48.97 Aligned_cols=142 Identities=14% Similarity=0.156 Sum_probs=94.8
Q ss_pred hHhhHHHHHHHHHHHhhcCC---CCchHHHHHH------------HHhhccCCccHHHHHHHHHHHHHhhhccCccccc-
Q 002877 107 EARHTSAQVIAKIASIEIPQ---KQWPELIRSL------------LNNMTQQDSLAALKQATLETLGYVCEEISHQDLV- 170 (872)
Q Consensus 107 ~vr~~~~~~l~~i~~~~~p~---~~~~~ll~~l------------~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~- 170 (872)
+||..+-.++..+++..-+. +.|+.++|.- .-.+.|+ ++..|.+|+..+..+.+... .++.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp--~~kvR~aA~~~l~~lL~gsk-~~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP--SPKVRAAAASALAALLEGSK-PFLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC--chhHHHHHHHHHHHHHHccH-HHHHH
Confidence 47889999999999883232 4788887776 1223345 78899999999999888752 1110
Q ss_pred ------------------hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcC
Q 002877 171 ------------------QDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKS 232 (872)
Q Consensus 171 ------------------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 232 (872)
...+.++-..+...+..+ .+..+....+||+..+++..+-+--..+....++..+...+.+
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E-~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE-KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 112344555666677664 5667888999999988764221111111123356666777778
Q ss_pred CcHHHHHHHHHHHHHHHHhh
Q 002877 233 KEVEIRQAAFECLVSIASTY 252 (872)
Q Consensus 233 ~~~~~~~~~~~~l~~l~~~~ 252 (872)
.|.+++..++-|++.++...
T Consensus 157 ~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 157 RDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCCcHHHHHHHHHHHHHcCC
Confidence 89999999999999887654
No 194
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=3.5 Score=45.18 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=81.5
Q ss_pred hHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHH
Q 002877 407 LVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLA 485 (872)
Q Consensus 407 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
.+..++.++++....++..||..++..|..+...... .....++.+...++..+.| .|.||..|+.++..+-
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-------idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-------IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-------cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 5678888999999999999999999999999885554 5667888999999999999 9999999999999887
Q ss_pred HhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHH
Q 002877 486 QGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLN 532 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~ 532 (872)
..- .+.=. .+...+...++. +.+..||++++.+|.
T Consensus 155 ~d~------~dee~----~v~n~l~~liqn--DpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 155 GDP------KDEEC----PVVNLLKDLIQN--DPSDEVRRAALSNIS 189 (892)
T ss_pred cCC------CCCcc----cHHHHHHHHHhc--CCcHHHHHHHHHhhc
Confidence 432 11111 234445555553 245778988876654
No 195
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.90 E-value=0.18 Score=52.10 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=90.9
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC---CChHHHHHHHHhHhHHhHhhhhhhh
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKG---DEEAVALQAVEFWSSICDEEIELQE 298 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~al~~l~~l~~~~~~~~~ 298 (872)
.+.-+.+.+.+.++..|..++..|..= .-+.+.++.++.++...... .+-......+.+..++..+..
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~---- 249 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN---- 249 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC----
Confidence 344444444456777888888776542 11222222233332222221 133344455555556655421
Q ss_pred hcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCccc-CCCCcchhhhHHHHHHHHHhhcCC---cchhchHHHHH
Q 002877 299 FENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQ-DDSIWNISMAGGTCLGLVARTVGD---EVVPLVMPFVE 374 (872)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~-d~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~ 374 (872)
-++.+|+-+++|.++.++....-.... .++.|.+|..|+.++..++..++. .+.+.+...+.
T Consensus 250 --------------l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~ 315 (343)
T cd08050 250 --------------LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLL 315 (343)
T ss_pred --------------CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 246778888999888877543221110 223499999999999999999874 45566666666
Q ss_pred hhccCCC--cchHHHHHHHHHHhhc
Q 002877 375 ANIVKSD--WRCREAATYAFGSVLE 397 (872)
Q Consensus 375 ~~l~~~~--~~~r~aal~~l~~i~~ 397 (872)
..+.++. ...+++|+.+|+.+..
T Consensus 316 k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 316 KALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHcCCCCCcchhhHHHHHHHHhCc
Confidence 6665543 4458999999998853
No 196
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.72 E-value=3 Score=44.86 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=58.8
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHH-HHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMP-FVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE 422 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~ 422 (872)
+..|.+|+.+|+.++...++.....+.. .+..+++++.-..|..+.+.+...+.........+..+.+.+.+...|.++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 5779999999999999998777776665 689999998888999999999888876542222211345566667777644
No 197
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.66 E-value=3.1 Score=42.74 Aligned_cols=126 Identities=11% Similarity=0.150 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhch-
Q 002877 526 AAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFIL- 604 (872)
Q Consensus 526 ~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~- 604 (872)
.++.+++.+++..+ ....+++..++..+++.--..+. +|-..+++.|......+..+++..-. .+.
T Consensus 91 evL~l~~~ii~kl~-~~~~~~v~~I~~~vf~~Tl~MI~------~d~~~yPe~r~~ff~LL~~i~~~~f~------~l~~ 157 (319)
T PF08767_consen 91 EVLSLMATIINKLG-ELIQPQVPQILEAVFECTLPMIN------KDFEEYPEHRVNFFKLLRAINEHCFP------ALLQ 157 (319)
T ss_dssp HHHHHHHHHHHHHG-GGCCCCHHHHHHHHHHHHHHHHS------STSSSSHHHHHHHHHHHHHHHHHHTH------HHHH
T ss_pred hHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHH------hhhhhChHHHHHHHHHHHHHHHHhHH------HHHc
Confidence 66777888888777 55555555555555555444432 23345677777777888877776544 232
Q ss_pred ---hhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh--------HHHhhhHHHHHHHHhhhcccch
Q 002877 605 ---QTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP--------EFAKYMPEFYQYLQMGLQNSEE 664 (872)
Q Consensus 605 ---~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~--------~~~~~l~~i~~~l~~~l~~~~~ 664 (872)
..+..+++.+...+.+++.++.+.++.++..+...... -+..|+-.++..++..+.++..
T Consensus 158 lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 158 LPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp S-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 23567888899999999999999999999988876544 1223444555555555555443
No 198
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=2.8 Score=42.23 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=107.1
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH-
Q 002877 470 APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA- 548 (872)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~- 548 (872)
+..-+..|..-|..+++..++ ...+.+ -.-+..++..+++ .+..+|..|.+.|+++++..| .-....++
T Consensus 96 ~le~ke~ald~Le~lve~iDn----Andl~~--~ggl~~ll~~l~~---~~~~lR~~Aa~Vigt~~qNNP-~~Qe~v~E~ 165 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDN----ANDLIS--LGGLVPLLGYLEN---SDAELRELAARVIGTAVQNNP-KSQEQVIEL 165 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhh----HHhHhh--ccCHHHHHHHhcC---CcHHHHHHHHHHHHHHHhcCH-HHHHHHHHc
Confidence 566677888888888877632 222222 1223333345542 347789999999999999887 33333333
Q ss_pred HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHH-HHHHHHHHHHcc--CChhH
Q 002877 549 ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTAD-QIMVLFLRVFAC--RSSTV 625 (872)
Q Consensus 549 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~--~~~~v 625 (872)
..++.++..+.. +.....+.+++.+++.+++.... ....+.. .=+..|..++.+ .+...
T Consensus 166 ~~L~~Ll~~ls~------------~~~~~~r~kaL~AissLIRn~~~------g~~~fl~~~G~~~L~~vl~~~~~~~~l 227 (342)
T KOG2160|consen 166 GALSKLLKILSS------------DDPNTVRTKALFAISSLIRNNKP------GQDEFLKLNGYQVLRDVLQSNNTSVKL 227 (342)
T ss_pred ccHHHHHHHHcc------------CCCchHHHHHHHHHHHHHhcCcH------HHHHHHhcCCHHHHHHHHHcCCcchHH
Confidence 344555555542 12234677889999999988776 4444432 226677888877 46677
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHH
Q 002877 626 HEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDV 678 (872)
Q Consensus 626 ~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 678 (872)
+..++.+++.+.......-.-.-...++.....+....+.++...++..+-..
T Consensus 228 krK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 228 KRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHH
Confidence 88888889988775543222222333444433333333344555555554433
No 199
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.66 E-value=3.1 Score=42.71 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=52.9
Q ss_pred HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 002877 650 EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 650 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
.++..|.+.|+.+.+|.+...||-=+|.+++.+++.-.... -+-=..+.+.+..+ +++||-.|+.|+..+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~--d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE--DPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC--CchHHHHHHHHHHHHHh
Confidence 57778888888888888888899999999998864311110 01224566777777 89999999999988765
No 200
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.55 E-value=3.4 Score=42.43 Aligned_cols=186 Identities=15% Similarity=0.213 Sum_probs=105.6
Q ss_pred HHHHhhcCCChhHhhHHHHHHHHHHHhhcCC----------CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccC
Q 002877 96 LLLRTLASPVPEARHTSAQVIAKIASIEIPQ----------KQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEIS 165 (872)
Q Consensus 96 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~----------~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 165 (872)
.|+..|..-+-..|+.++++++.+.+..... .+||+++..|+..-..+ +.. -.+-.+|...++.
T Consensus 80 ~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~--dia--l~~g~mlRec~k~-- 153 (335)
T PF08569_consen 80 LLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP--DIA--LNCGDMLRECIKH-- 153 (335)
T ss_dssp HHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST--TTH--HHHHHHHHHHTTS--
T ss_pred HHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc--ccc--chHHHHHHHHHhh--
Confidence 3444444445555666666666665543221 35688888888888766 321 1111222222221
Q ss_pred ccccchhh--HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---hhhhhhhHHHHHHHHHHHhhcCCcHHHHHH
Q 002877 166 HQDLVQDE--VNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFAL---TNFQNEMERNYIMKVVCETAKSKEVEIRQA 240 (872)
Q Consensus 166 ~~~l~~~~--~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~ 240 (872)
+.+ ..+ -...+-.+++.++. ++=+|-..|+.++..++..=+ ..+-.. ..+.++....+++.+++--+|..
T Consensus 154 -e~l-~~~iL~~~~f~~ff~~~~~--~~Fdiasdaf~t~~~llt~hk~~~a~fl~~-n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 154 -ESL-AKIILYSECFWKFFKYVQL--PNFDIASDAFSTFKELLTRHKKLVAEFLSN-NYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp -HHH-HHHHHTSGGGGGHHHHTTS--SSHHHHHHHHHHHHHHHHSSHHHHHHHHHH-THHHHHHHHHHHCT-SSHHHHHH
T ss_pred -HHH-HHHHhCcHHHHHHHHHhcC--CccHhHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHccCCCeEeehh
Confidence 110 000 01122234455655 678888888888888664211 111111 11236667778888999999999
Q ss_pred HHHHHHHHHHhh--hhhhHHhHH--HHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 241 AFECLVSIASTY--YEVLEPYMQ--TLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 241 ~~~~l~~l~~~~--~~~~~~~l~--~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
+++.|++++... ...+..|+. .-+..++..+++....++..|+....-++.+
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999998543 445556655 3566777888999999999999988888775
No 201
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.54 E-value=0.15 Score=42.19 Aligned_cols=93 Identities=10% Similarity=0.121 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHhhhcc---cchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHH
Q 002877 646 KYMPEFYQYLQMGLQN---SEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIA 722 (872)
Q Consensus 646 ~~l~~i~~~l~~~l~~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~ 722 (872)
+++=.++..+...+.+ ..+...+..++..++.+++..+..+..+.++++..|...+. .++++..++.|+..+.
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~----~~~l~~~al~~W~~fi 82 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALE----IPELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC----ChhhHHHHHHHHHHHH
Confidence 3333444444444444 44566889999999999997777788888888887777776 3478899999999999
Q ss_pred Hhhc-cchhhhHHHHHHHHHH
Q 002877 723 LAIG-VHFEKYVPHALQMMQE 742 (872)
Q Consensus 723 ~~~~-~~~~~~l~~i~~~l~~ 742 (872)
..++ +++.++++.++-.++.
T Consensus 83 ~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 83 KTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred HHCCHHHHHHHHHHHHHHHHH
Confidence 9876 4566777776666554
No 202
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.42 E-value=0.17 Score=41.49 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=68.3
Q ss_pred HhhhHHHHHHHHhhhcccc---hHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHH
Q 002877 645 AKYMPEFYQYLQMGLQNSE---EYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDI 721 (872)
Q Consensus 645 ~~~l~~i~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l 721 (872)
.+++=.++..+...+.+.+ +...+..++..++.+++..|..+..+.++|+..|...|. .++++..++.|+..+
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~----~~eL~~~al~~W~~~ 81 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE----IPELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----chhHHHHHHHHHHHH
Confidence 3444455566655555544 445789999999999998888888888888888887776 455899999999999
Q ss_pred HHhhcc-chhhhHHHHHHHHHH
Q 002877 722 ALAIGV-HFEKYVPHALQMMQE 742 (872)
Q Consensus 722 ~~~~~~-~~~~~l~~i~~~l~~ 742 (872)
...+++ +..+.++.++-.+..
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHH
Confidence 988763 455555555554443
No 203
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.41 E-value=5.5 Score=44.02 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=87.3
Q ss_pred HHHHHHHhhcC-CcchhchHHHHHhhccCC--CcchHHHHHHHH---HHhhcCCCccchhHhHHhHHHHHHHhcC-----
Q 002877 352 TCLGLVARTVG-DEVVPLVMPFVEANIVKS--DWRCREAATYAF---GSVLEGPTIDKLAPLVHAGFDFLLNAMR----- 420 (872)
Q Consensus 352 ~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l---~~i~~~~~~~~~~~~l~~l~~~l~~~l~----- 420 (872)
..|..+++... ....|.++..+...+.++ +.+.|..++..+ ......+.+..+...-+.+...+...++
T Consensus 302 kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~ 381 (501)
T PF13001_consen 302 KILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQ 381 (501)
T ss_pred HHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccccccccc
Confidence 45666666543 446688888888888887 677888888877 6666665533333222233333333332
Q ss_pred ---CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhc
Q 002877 421 ---DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYE 489 (872)
Q Consensus 421 ---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~ 489 (872)
..+...|..+-.+||.++...+.. ... --.++..++..+.+ .+.++.+.-.||..++..+.
T Consensus 382 ~~~~~~~~lR~~aYe~lG~L~~~~p~l-------~~~-d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 382 SNSSEDIELRSLAYETLGLLAKRAPSL-------FSK-DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred CCCcccHHHHHHHHHHHHHHHccCccc-------ccc-cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 346779999999999999988761 111 14567777777766 88899988899999998873
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.33 E-value=1.5 Score=50.05 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=135.4
Q ss_pred cChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHH
Q 002877 33 QNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTS 112 (872)
Q Consensus 33 ~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~ 112 (872)
..||+=++..+|.|.+ .--|.-|..+|.+++.- ..|- +.-..--.|....+++|.++...+|..+
T Consensus 468 r~PPeQLPiVLQVLLS----QvHRlRAL~LL~RFLDl----------GpWA-V~LaLsVGIFPYVLKLLQS~a~ELrpiL 532 (1387)
T KOG1517|consen 468 RTPPEQLPIVLQVLLS----QVHRLRALVLLARFLDL----------GPWA-VDLALSVGIFPYVLKLLQSSARELRPIL 532 (1387)
T ss_pred CCChHhcchHHHHHHH----HHHHHHHHHHHHHHhcc----------chhh-hhhhhccchHHHHHHHhccchHhhhhhH
Confidence 4678888888888875 45688899999999863 3442 1222223677788899999999999999
Q ss_pred HHHHHHHHHhhcCCCCchHHHHH-----HHHhhcc-CCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhccc
Q 002877 113 AQVIAKIASIEIPQKQWPELIRS-----LLNNMTQ-QDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMN 186 (872)
Q Consensus 113 ~~~l~~i~~~~~p~~~~~~ll~~-----l~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~ 186 (872)
+-+-+.|...+ |. .-.+++.. +++.+.+ +..++++|-.+.-+|..++..+....- .-.-..++...+..++
T Consensus 533 VFIWAKILAvD-~S-CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~-acl~~~li~iCle~ln 609 (1387)
T KOG1517|consen 533 VFIWAKILAVD-PS-CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQK-ACLNGNLIGICLEHLN 609 (1387)
T ss_pred HHHHHHHHhcC-ch-hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHH-HhccccHHHHHHHHhc
Confidence 99999998888 42 44555544 3444444 333568899999999999987631111 1123446667777888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhhh--hH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhh
Q 002877 187 LAEHSAEVRLAATRALYNALDFALTNFQNE--ME-RNYIMKVVCETAKSKEVEIRQAAFECLVSIASTY 252 (872)
Q Consensus 187 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~--~~-~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (872)
++ +.+-+|.=.+-||+.+-+ +++.. .. +..-...+...+.++-+++|.+++..|+.++...
T Consensus 610 d~-~~pLLrQW~~icLG~LW~----d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 610 DD-PEPLLRQWLCICLGRLWE----DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred CC-ccHHHHHHHHHHHHHHhh----hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 74 256778778888887533 23321 11 1223455666778899999999999999999864
No 205
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.24 E-value=3 Score=39.94 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=63.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcc-cchHhHHHHHHHHHHHHHHHhcCCcc
Q 002877 609 QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQN-SEEYQVCAITVGVVGDVCRALDDKVL 687 (872)
Q Consensus 609 ~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~~~~~ 687 (872)
.-+..+.+-+...+.-.|..+..++|.+-. +.-+|.+.+.|.+ .+.+-||..|..+||.++.
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence 455666666666666677776666666632 2345555555544 3456789999999998854
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccc
Q 002877 688 PFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVH 728 (872)
Q Consensus 688 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 728 (872)
++.++.|.+.+.++ .+-+++.+..++.-.-...++.
T Consensus 250 ---e~~~~vL~e~~~D~--~~vv~esc~valdm~eyens~~ 285 (289)
T KOG0567|consen 250 ---EDCVEVLKEYLGDE--ERVVRESCEVALDMLEYENSKE 285 (289)
T ss_pred ---HHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhcccc
Confidence 35577777777777 6778888777776554444433
No 206
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.22 E-value=0.26 Score=51.01 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=89.4
Q ss_pred HHHHHHhhcC-CcchhchHHHHHhhccC--C-CcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc---------
Q 002877 353 CLGLVARTVG-DEVVPLVMPFVEANIVK--S-DWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM--------- 419 (872)
Q Consensus 353 ~l~~l~~~~~-~~~~~~l~~~l~~~l~~--~-~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l--------- 419 (872)
+|..+....| ..++|.+..++.+.+.. . ++..-...+.+..++..+.. -.+.+|+.+++|.++.++
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 4555555555 66777777777665542 2 46556666778888888765 578899999999999987
Q ss_pred -CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--Ch-HHHHHHHHHHHHH
Q 002877 420 -RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--AP-NVAEKVCGAIYYL 484 (872)
Q Consensus 420 -~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~-~v~~~a~~al~~l 484 (872)
.+.++.+|..|+.+++.++..+.. ......+.++..+.+.+.| .+ .....|...|..+
T Consensus 277 ~~~~h~~LRd~AA~ll~~i~~~f~~-------~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 277 PDDNHWALRDYAARLLAQICRKFST-------SYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCC-------CCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 356789999999999999998876 3445667888888888876 22 2355666655544
No 207
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.21 E-value=1.5 Score=49.85 Aligned_cols=137 Identities=17% Similarity=0.123 Sum_probs=80.5
Q ss_pred CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhc-CCCccch---hHhHHhHHHHHHH----hcCCCcHHHHHHHHHHH
Q 002877 363 DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLE-GPTIDKL---APLVHAGFDFLLN----AMRDENNHVKDTTAWTL 434 (872)
Q Consensus 363 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~-~~~~~~~---~~~l~~l~~~l~~----~l~d~~~~vr~~a~~~l 434 (872)
..++..+.+++..-...++...|.++++++++++. .|. ..- ...+..+++.+.+ +.++.+...+..++++|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV-NTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 34444555555443333456788999999999886 332 211 1122344444444 44456667788889999
Q ss_pred HHHHhhccCCCCCccccCcccHHHHHHHHHHHhh-c---ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHH
Q 002877 435 SRIFELLHCPATGFSVISPENLQRILTVLLESIK-D---APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELL 510 (872)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~ 510 (872)
|+++. +..++.+.+.+. + .+.+|..|+++|..+++.. +.. +-+.++
T Consensus 471 GN~g~-----------------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~------p~~-------v~~~l~ 520 (574)
T smart00638 471 GNAGH-----------------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD------PRK-------VQEVLL 520 (574)
T ss_pred hccCC-----------------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC------chH-------HHHHHH
Confidence 88752 223333333333 3 6789999999999988765 332 333344
Q ss_pred HhhccCCCcchhHHHHHHHHH
Q 002877 511 RAADRTDVGGSKLRSAAYETL 531 (872)
Q Consensus 511 ~~l~~~~~~~~~vr~~a~~al 531 (872)
..+.+.. ++..+|.+|+-.+
T Consensus 521 ~i~~n~~-e~~EvRiaA~~~l 540 (574)
T smart00638 521 PIYLNRA-EPPEVRMAAVLVL 540 (574)
T ss_pred HHHcCCC-CChHHHHHHHHHH
Confidence 4444333 5567898777543
No 208
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=10 Score=45.88 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhh
Q 002877 708 RSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVM 787 (872)
Q Consensus 708 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 787 (872)
..+-..+..++++.+...++++.|+...++...... + ...|--++..+.-+...++ +.+
T Consensus 1518 ~~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss----------------~-~~~r~~ai~~~~~l~~~lg----e~~ 1576 (1621)
T KOG1837|consen 1518 DIVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSS----------------S-RKARYLAIIQVKLLYTKLG----ENV 1576 (1621)
T ss_pred hHHHHHHHHHHHhhccCChhhhHHHHHHHHHHhccc----------------c-HHHHHHHHHHHHHHHHHhc----chh
Confidence 334556677777777777766666665554333321 0 1233333444444444454 458
Q ss_pred hhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcc
Q 002877 788 MPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPN 829 (872)
Q Consensus 788 ~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 829 (872)
.+.++++++++.++.+| .++++...+-.++..+=+..|.+
T Consensus 1577 ~~lL~q~iPfLaEL~ED--~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1577 IVLLPQSIPFLAELMED--EDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred HHhhhhhhHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhchh
Confidence 89999999999999877 67888888888888888877874
No 209
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.03 E-value=0.4 Score=52.28 Aligned_cols=188 Identities=12% Similarity=0.143 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHH-hHHhhHHHHHHHHhcccCCc
Q 002877 259 YMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEK-ARSSLVPMLLETLLKQEEDQ 337 (872)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~l~~~l~~~~~d~ 337 (872)
|-..+++.++..+...+..+|..-++.+..+++. +.++ +-.+++|.+..-+.+.+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---------------------Lt~~~~~d~I~phv~~G~~DTn--- 382 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---------------------LTKQILNDQIFPHVALGFLDTN--- 382 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---------------------cCHHhhcchhHHHHHhhcccCC---
Confidence 3345778888888889999998887777666654 1122 22367777776665322
Q ss_pred ccCCCCcchhhhHHHHHHHHHhhcCCc-chhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHH
Q 002877 338 DQDDSIWNISMAGGTCLGLVARTVGDE-VVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLL 416 (872)
Q Consensus 338 ~~d~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~ 416 (872)
..+|.....++..++..++.. +-..++.++...-.|++...|--...|+|.++....+.... .-+.....
T Consensus 383 ------~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~---~vL~~aft 453 (690)
T KOG1243|consen 383 ------ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK---RVLASAFT 453 (690)
T ss_pred ------HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc---cccchhhh
Confidence 578888888888888888755 45567777777666777777777778888887665321111 12233445
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 417 NAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 417 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
..+.|+-+.-|.++.+.+....+.+.. .+.-.++++.+.....| ++.||..|..++..+....
T Consensus 454 ralkdpf~paR~a~v~~l~at~~~~~~---------~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 454 RALKDPFVPARKAGVLALAATQEYFDQ---------SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hhhcCCCCCchhhhhHHHhhcccccch---------hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 578999999999999998777665543 45567788877777777 8899999999888777654
No 210
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.90 E-value=4.1 Score=41.14 Aligned_cols=169 Identities=8% Similarity=0.056 Sum_probs=114.1
Q ss_pred HHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Q 002877 479 GAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRL 558 (872)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l 558 (872)
.+++++.+....... .....|+-..+...|.++++ ..-...|-..|++....+.+..|.+.+...+.-..|.++..+
T Consensus 30 s~L~kL~k~lq~~~~-~~~~IP~k~~v~krLaqCL~--P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~ 106 (307)
T PF04118_consen 30 SFLGKLLKALQNSNN-QFPYIPHKLQVSKRLAQCLN--PALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLF 106 (307)
T ss_pred HHHHHHHHHHhccCC-CCceeCcHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHH
Confidence 335555554431111 33445667788889999997 333466788999999999999883334555555566666666
Q ss_pred HHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHH
Q 002877 559 GQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAY 638 (872)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 638 (872)
..+ ...++...+..+...+-.++. .+.|.++.++-.++..++++..++.+.++..+..+..
T Consensus 107 ~~a-------------si~Vkp~lL~i~e~~~lpL~~------~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~ 167 (307)
T PF04118_consen 107 SYA-------------SIQVKPQLLDIYEKYYLPLGP------ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKE 167 (307)
T ss_pred HHH-------------HHhhHHHHHHHHHHHhcCccH------HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHH
Confidence 543 234556667777776667777 7888889999999999998899999999999999988
Q ss_pred HhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHH
Q 002877 639 ATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGD 677 (872)
Q Consensus 639 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 677 (872)
..+.. -|+..++-.+. . ++++|..|+..+..
T Consensus 168 ~v~~~--~F~~~lwl~ii----~--sp~~Rl~al~~l~~ 198 (307)
T PF04118_consen 168 AVGDK--YFWQCLWLCII----T--SPSRRLGALNYLLR 198 (307)
T ss_pred hcChh--HHHHHHHHHHh----c--CcchhHHHHHHHHH
Confidence 77765 23344444443 2 35578777766543
No 211
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.90 E-value=4.8 Score=44.52 Aligned_cols=213 Identities=12% Similarity=0.182 Sum_probs=122.8
Q ss_pred cccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHH
Q 002877 453 PENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLN 532 (872)
Q Consensus 453 ~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~ 532 (872)
.-...+++|.++..+.+..-| -...-.+..+.+ +.....|...++|.|...++..+ +..+....++-+.
T Consensus 307 rv~~~kiLP~L~~el~n~~~v-p~~LP~v~~i~~--------~~s~~~~~~~~~p~l~pi~~~~~--~~~~~l~i~e~md 375 (700)
T KOG2137|consen 307 RVLFQKILPTLVAELVNTKMV-PIVLPLVLLIAE--------GLSQNEFGPKMLPALKPIYSASD--PKQALLFILENMD 375 (700)
T ss_pred HHHHHhhhhHHHHHhcccccc-ccccchhhhhhh--------ccchhhhhhhhhHHHHHHhccCC--cccchhhHHhhHH
Confidence 345667777777766531111 111112222332 33345677788888888887533 3445677777777
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHH
Q 002877 533 EVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMV 612 (872)
Q Consensus 533 ~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 612 (872)
.+.+..+ . .+..+.++|.+...++.. ...++..++..+..+.+.+... .++ ..+++
T Consensus 376 lL~~Kt~-~--e~~~~~IlplL~~S~~~~-------------~~~iQ~~~L~~lptv~e~iD~~-----~vk---~~ilP 431 (700)
T KOG2137|consen 376 LLKEKTP-P--EEVKEKILPLLYRSLEDS-------------DVQIQELALQILPTVAESIDVP-----FVK---QAILP 431 (700)
T ss_pred HHHhhCC-h--HHHHHHHHHHHHHHhcCc-------------chhhHHHHHHhhhHHHHhccHH-----HHH---HHHHH
Confidence 7887766 2 356667888777766532 2346677778888777666541 122 24556
Q ss_pred HHHHH-HccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHH
Q 002877 613 LFLRV-FACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCD 691 (872)
Q Consensus 613 ~l~~~-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 691 (872)
.+..+ +..++..++..++.+++.+++.+.. ...++.+.|.+.. .+. .++.+....+.+...++........-...
T Consensus 432 ~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~--~~v~d~~lpi~~~-~~~-~dp~iv~~~~~i~~~l~~~~~~g~ev~~~ 507 (700)
T KOG2137|consen 432 RLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK--AAVLDELLPILKC-IKT-RDPAIVMGFLRIYEALALIIYSGVEVMAE 507 (700)
T ss_pred HhhcchhcccchHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHH-hcC-CCcHHHHHHHHHHHHHHhhcccceeeehh
Confidence 55554 3444788999999999999865543 2234455555543 332 34555554445444444333322233346
Q ss_pred HHHHHHHHHhcCC
Q 002877 692 GIMSLLLNALSNS 704 (872)
Q Consensus 692 ~i~~~l~~~l~~~ 704 (872)
+++|.++.....+
T Consensus 508 ~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 508 NVLPLLIPLSVAP 520 (700)
T ss_pred hhhhhhhhhhhcc
Confidence 7778777766554
No 212
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.89 E-value=11 Score=44.60 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=105.0
Q ss_pred HHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhh---------c---cCCccHHHHHHHHHHHH
Q 002877 91 SQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNM---------T---QQDSLAALKQATLETLG 158 (872)
Q Consensus 91 ~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l---------~---~~~~~~~~r~~al~~l~ 158 (872)
..+.+.|..-+.++.+.+|+-++-++..|.+..+-.... +.++.+...+ . +++.-..+|+.+.+.|+
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~-~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSY-ELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhH-HHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 345667778888899999999999999998765432122 2233322111 1 12223458999999999
Q ss_pred HhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHH
Q 002877 159 YVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR 238 (872)
Q Consensus 159 ~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 238 (872)
.+.+....+ .....+..+.+.+.. +.+++|...+..+...+. ...++-. ....++++.+.+.+++.+.+++
T Consensus 155 ~~l~~~~~s-----~~~~~~~il~q~~~q--~~w~ir~Ggll~iky~~a-ir~d~l~-~~~~~vl~~~i~~L~ds~ddv~ 225 (1549)
T KOG0392|consen 155 AYLKHMDES-----LIKETLDILLQMLRQ--PNWEIRHGGLLGIKYNVA-IRQDLLF-QLLNLVLDFVIEGLEDSDDDVR 225 (1549)
T ss_pred HHHHhhhhH-----hhHHHHHHHHHHHcC--cchhheechHHHHHHHHH-HHHHHHH-HHHHHHHHHHHhhhhhcchHHH
Confidence 988876433 334445555555555 467777776666665544 2222111 2234567777888889999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 002877 239 QAAFECLVSIASTYYEVLEPYMQTLFELT 267 (872)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~~~l~~l~~~~ 267 (872)
..+...+..+...+.+.....+..++..+
T Consensus 226 ~~aa~~l~~~~s~~v~l~~~~i~~lv~~l 254 (1549)
T KOG0392|consen 226 SVAAQFLVPAPSIQVKLMVQKIAKLVHTL 254 (1549)
T ss_pred HHHHHHhhhhhHHHHhhhHhHHHHHHHHH
Confidence 99999998888776544434344444433
No 213
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.88 E-value=1.3 Score=47.04 Aligned_cols=106 Identities=20% Similarity=0.171 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcC--CCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccC
Q 002877 88 SYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIP--QKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEIS 165 (872)
Q Consensus 88 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p--~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 165 (872)
+..+.+...+++++.+++..||...+++++.+.....+ +.-++.++..|...+-+. .+.+|.-|..+|.++-+...
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR--E~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR--EKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHhccC
Confidence 34556666777888889999999999999999876543 224456667777777776 78899999999988776542
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Q 002877 166 HQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRAL 202 (872)
Q Consensus 166 ~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l 202 (872)
..-+.+...+...++.+ |+.+||.+|+--+
T Consensus 165 ------neen~~~n~l~~~vqnD-PS~EVRr~allni 194 (885)
T COG5218 165 ------NEENRIVNLLKDIVQND-PSDEVRRLALLNI 194 (885)
T ss_pred ------ChHHHHHHHHHHHHhcC-cHHHHHHHHHHHe
Confidence 22333444455555543 8999999987654
No 214
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.88 E-value=1.3 Score=45.69 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCccchhhchhhH----HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHh----hh
Q 002877 577 DLQASLCGVLQVIIQKFSSTDATKSFILQTA----DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAK----YM 648 (872)
Q Consensus 577 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~----~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~----~l 648 (872)
++..+++..+..++..-+.. ...+..+. +..+..++..++.++..+...|...++.++...+..... .+
T Consensus 72 d~v~yvL~li~dll~~~~~~---~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 72 DTVQYVLTLIDDLLSDDPSR---VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSSS---HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHH---HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 44556666666666554431 00111111 125677777888889999999999999998776654433 44
Q ss_pred HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc--CCccccHHHHHHHHHHHhc-----CCCCCCCCchhHHHHHHHH
Q 002877 649 PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD--DKVLPFCDGIMSLLLNALS-----NSQLNRSVKPPILSCFGDI 721 (872)
Q Consensus 649 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~-----~~~~~~~~~~~~~~~l~~l 721 (872)
+.++..+...+++ ++.++...++.+++.+.+.-. ..|.. ...++.+.+.+. .+.....+.-.++.|+-.+
T Consensus 149 ~~ll~~L~~~l~~-~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 149 PKLLQWLSSQLSS-SDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHH-TT-H-HHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 4444444443332 344577888999998875432 11211 566777777772 2211333444555555544
Q ss_pred HHhh--ccchhhhHHHHHHHHHHHHHh
Q 002877 722 ALAI--GVHFEKYVPHALQMMQEAAKA 746 (872)
Q Consensus 722 ~~~~--~~~~~~~l~~i~~~l~~~~~~ 746 (872)
+-.- -+.+... .++|.+...++.
T Consensus 226 SF~~~~~~~~~~~--~~i~~L~~i~~~ 250 (312)
T PF03224_consen 226 SFEPEIAEELNKK--YLIPLLADILKD 250 (312)
T ss_dssp TTSHHHHHHHHTT--SHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcc--chHHHHHHHHHh
Confidence 3211 1122211 167777766553
No 215
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.18 Score=54.36 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=108.3
Q ss_pred HHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCC-------CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhcc
Q 002877 92 QVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQK-------QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEI 164 (872)
Q Consensus 92 ~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~-------~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 164 (872)
-.+..|++.|..+|..||..|+.++-...-...|+. ...+-+..+...+.++ -+.+|..|...+..+...+
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~--~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP--YPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHH
Confidence 455667788899999999999999998876655542 1244566777888888 7889988887777665543
Q ss_pred CccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 002877 165 SHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFEC 244 (872)
Q Consensus 165 ~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 244 (872)
.+.+....+..++..++..+..+ ...+||.+.++++..++..-.. .....++++.+...+++..+.+|.+..+.
T Consensus 252 -We~iP~~i~~~ll~kI~d~~a~d-t~s~VR~svf~gl~~~l~np~s----h~~le~~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 252 -WEMIPPTILIDLLKKITDELAFD-TSSDVRCSVFKGLPMILDNPLS----HPLLEQLLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred -HHHcCHHHHHHHHHHHHHHhhhc-cchheehhHhcCcHHHHcCccc----hhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence 23332445677777777777754 4569999999999876532111 11123477777778889999999999999
Q ss_pred HHHHHH
Q 002877 245 LVSIAS 250 (872)
Q Consensus 245 l~~l~~ 250 (872)
+..+-.
T Consensus 326 ll~ik~ 331 (1005)
T KOG1949|consen 326 LLKIKA 331 (1005)
T ss_pred HHHHHh
Confidence 887654
No 216
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=10 Score=43.51 Aligned_cols=283 Identities=11% Similarity=0.140 Sum_probs=150.7
Q ss_pred HHHHHHHHhhccCCCCCccccCcccHHHHHHHHHH---Hhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHH
Q 002877 431 AWTLSRIFELLHCPATGFSVISPENLQRILTVLLE---SIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSII 506 (872)
Q Consensus 431 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il 506 (872)
...+|.++...++ .+.+.++.++.+ .+.+ ++.++..|..++..++..+....+ +..+....+-++
T Consensus 569 ld~I~~~a~~~g~----------~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~-~~lI~en~DYlv 637 (1014)
T KOG4524|consen 569 LDSIGTIAAVMGE----------EFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSP-PHLIRENVDYLV 637 (1014)
T ss_pred hhhhHHHHHHhHH----------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCCh-HHHHHhhhHHHH
Confidence 4456666665554 344444444433 3444 888999999999999998852111 222333444555
Q ss_pred HHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHH
Q 002877 507 AELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVL 586 (872)
Q Consensus 507 ~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 586 (872)
..+...+++.+. --.+-..+..+....+ .+..+++..++..++..+....... -......+
T Consensus 638 ~sla~~L~~~~~-----s~~~~~Vl~vVl~~s~-~~~i~~l~dvvq~i~~~lD~yH~~~-------------~~~~~~ll 698 (1014)
T KOG4524|consen 638 NSLALRLNTSGM-----SPRVPDVLMVVLQYSD-YGTIPNLKDVVQTIFKLLDYYHGYS-------------CLQFFQLL 698 (1014)
T ss_pred HHHHHHhccCCC-----CchhHHHHHHHhhcCC-CCchhhHHHHHHHHHHHHHHhcccc-------------hhHHHHHH
Confidence 555555553221 2345566777777777 7788999999988888777642110 01122334
Q ss_pred HHHHHHcCCCccchhhchhhHHHHHHHHHHHHcc----------C--------ChhHHHHHHH-HHHHH----------H
Q 002877 587 QVIIQKFSSTDATKSFILQTADQIMVLFLRVFAC----------R--------SSTVHEEAML-AIGAL----------A 637 (872)
Q Consensus 587 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~----------~--------~~~v~~~a~~-~l~~l----------~ 637 (872)
..+++..+..--....+....++....--.+++. . ....++..+. -...- .
T Consensus 699 ~s~ik~~~~~~~~~~il~~~~d~~~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~ 778 (1014)
T KOG4524|consen 699 HSIIKEMKKKYINDEILGHIADQHISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREE 778 (1014)
T ss_pred HHHHHHHhhccccchhhHHHHHHHHHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCC
Confidence 4444433321000000101111111111111110 0 0111111110 00000 0
Q ss_pred HH-----hhhHHHhh-------hHHHHHHHHhhhcccchHhHHHHHHHHHHHHHH---HhcCCccccHHHHHHHHHHHhc
Q 002877 638 YA-----TGPEFAKY-------MPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCR---ALDDKVLPFCDGIMSLLLNALS 702 (872)
Q Consensus 638 ~~-----~~~~~~~~-------l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~i~~~l~~~l~ 702 (872)
.. ......|. +.+|+..-...|++ ++..+|..|+.++..... ...+.+.|.+.+.-+.++..+.
T Consensus 779 e~edens~~~d~ep~~~~qv~iv~kIl~r~~~~LS~-e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~ 857 (1014)
T KOG4524|consen 779 EVEDENSEYTDTEPILPDQVKIVLKILGRGIHLLSH-ESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLL 857 (1014)
T ss_pred CccccccCCCCCCCCCChHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHh
Confidence 00 00001111 12333333444443 445678888888765443 3457788888888999999888
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhccch-hhhHHHHHHHHHHHHHh
Q 002877 703 NSQLNRSVKPPILSCFGDIALAIGVHF-EKYVPHALQMMQEAAKA 746 (872)
Q Consensus 703 ~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~~~~ 746 (872)
.. ++-+-..|+.|+..++...|+=+ .+++..++|.+...++.
T Consensus 858 ~k--~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 858 CK--DPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred cC--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 87 78888999999999999888633 26888888888765553
No 217
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.67 E-value=2.5 Score=47.09 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHH-------HHHHHHHHHHHhccccCCCchHHHHHHHH
Q 002877 691 DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVP-------HALQMMQEAAKACAQLDMEDEELIDYGNQ 763 (872)
Q Consensus 691 ~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-------~i~~~l~~~~~~~~~~~~~d~~~~~~~~~ 763 (872)
+.++..-+..|... ....+.+.++.++.+++...+. +..|+. ..+|.+.+-++.. | +.
T Consensus 517 p~vVr~Yl~Ll~~s-~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~------~-------~~ 581 (717)
T KOG1048|consen 517 PSVVRPYLLLLALS-KNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRND------D-------SD 581 (717)
T ss_pred HHHHHHHHHHHHHh-cchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcC------C-------ch
Confidence 55666555555533 3677888999999998765442 222332 3345555554431 1 12
Q ss_pred HHHHHHHHHHhHhhccchh--hhhhhhhhHHHHHHHHHHHhcCC----CCCHhHHHHHHHHHHHHHhhhCcchhhhccCc
Q 002877 764 LRSSIFEAYSGILQGFKSA--RAEVMMPYAQHLLQFIELIFKDN----HRDENVTKAAVAVMGDLADALGPNTKLLFKDS 837 (872)
Q Consensus 764 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~il~~l~~~~~~~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 837 (872)
+ +.+..+++..+... ..+.+..| .++-+.+++.+. ..++++..+++..+.+++..--.. -++.+..
T Consensus 582 v----v~s~a~~LrNls~d~rnk~ligk~---a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~n-Akdl~~~ 653 (717)
T KOG1048|consen 582 V----VRSAAGALRNLSRDIRNKELIGKY---AIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLN-AKDLLEI 653 (717)
T ss_pred H----HHHHHHHHhhhccCchhhhhhhcc---hHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHH-HHHHHhc
Confidence 2 22333444433322 22223322 344444444332 256888899999999988433322 1223444
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHH
Q 002877 838 SFCNDFMSECLRSDDEQLKETAGWT 862 (872)
Q Consensus 838 ~~v~~ll~~~~~~~~~~~~~~a~~~ 862 (872)
.-++.++.......++++-.+|+-.
T Consensus 654 ~g~~kL~~I~~s~~S~k~~kaAs~v 678 (717)
T KOG1048|consen 654 KGIPKLRLISKSQHSPKEFKAASSV 678 (717)
T ss_pred cChHHHHHHhcccCCHHHHHHHHHH
Confidence 4567777665556677776766633
No 218
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.59 E-value=5.3 Score=41.14 Aligned_cols=232 Identities=13% Similarity=0.118 Sum_probs=110.8
Q ss_pred cCChhHHHHHHHHHHHHHHHhhh---HHHhhhH----HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHH
Q 002877 620 CRSSTVHEEAMLAIGALAYATGP---EFAKYMP----EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDG 692 (872)
Q Consensus 620 ~~~~~v~~~a~~~l~~l~~~~~~---~~~~~l~----~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 692 (872)
.++..+.+..+..++.+....+. .|..+.. ..+..+++.+... +..+...|+..++.++...+.........
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 34677788888888887765442 2222111 1444555555554 55588999999999987766544443345
Q ss_pred HHHHHHHHhcCCCC--CCCCchhHHHHHHHHHHhh--ccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHH
Q 002877 693 IMSLLLNALSNSQL--NRSVKPPILSCFGDIALAI--GVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSI 768 (872)
Q Consensus 693 i~~~l~~~l~~~~~--~~~~~~~~~~~l~~l~~~~--~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 768 (872)
+++.+++.+.+... +.+....++.+++.+...- ...|.. ...++.+...+....... ......+.-.+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~------~~~~~Ql~Y~~ 218 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNS------NSSGIQLQYQA 218 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccC------CCCchhHHHHH
Confidence 55666665554210 4456678888888886532 222221 344444444441100000 00112344444
Q ss_pred HHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHH-H
Q 002877 769 FEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSE-C 847 (872)
Q Consensus 769 ~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~-~ 847 (872)
+-|+|-+.-.-.. .......+ +++.+..++... ..|.+.+.++.++..++..........-+..+..+.+-.. .
T Consensus 219 ll~lWlLSF~~~~-~~~~~~~~---~i~~L~~i~~~~-~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 219 LLCLWLLSFEPEI-AEELNKKY---LIPLLADILKDS-IKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHTTSHHH-HHHHHTTS---HHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHhcCHHH-HHHHhccc---hHHHHHHHHHhc-ccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 5555544322111 11112222 334443333322 4688999999999999887775433222222222211111 1
Q ss_pred hcCCcHHHHHHHHHHHHH
Q 002877 848 LRSDDEQLKETAGWTQGM 865 (872)
Q Consensus 848 ~~~~~~~~~~~a~~~~~~ 865 (872)
.+-.|+++.+-..|..+.
T Consensus 294 rk~~Dedl~edl~~L~e~ 311 (312)
T PF03224_consen 294 RKWSDEDLTEDLEFLKEI 311 (312)
T ss_dssp S--SSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 345889888877776543
No 219
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.41 E-value=1.6 Score=44.08 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=102.1
Q ss_pred hchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHH----Hh--hhHHHHHHHHhhhc-------ccchHhHH
Q 002877 602 FILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEF----AK--YMPEFYQYLQMGLQ-------NSEEYQVC 668 (872)
Q Consensus 602 ~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~----~~--~l~~i~~~l~~~l~-------~~~~~~v~ 668 (872)
.+..+.+-+++.++.++++.+..+|..++.++..+....+... .. ..+-+.+.+..++. ..+...+-
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 6777888999999999999999999999999999988665432 21 23334444444443 12445677
Q ss_pred HHHHHHHHHHHHHhc----CCccccHHHHHHH-HHHHhcCCCC--CCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHH
Q 002877 669 AITVGVVGDVCRALD----DKVLPFCDGIMSL-LLNALSNSQL--NRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQ 741 (872)
Q Consensus 669 ~~a~~~l~~l~~~~~----~~~~~~~~~i~~~-l~~~l~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~ 741 (872)
..|..++-.++.... ..-...+.+++.. ++..+..... ...++...+..+..+...+|-....|+..+++.+.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888888888877642 1222333344433 4444443321 46677888999999999999999999999999999
Q ss_pred HHHHh
Q 002877 742 EAAKA 746 (872)
Q Consensus 742 ~~~~~ 746 (872)
+.++.
T Consensus 272 ~~l~n 276 (282)
T PF10521_consen 272 QILEN 276 (282)
T ss_pred HHhcC
Confidence 87664
No 220
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.26 E-value=9.5 Score=41.17 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCC-----C-------------
Q 002877 646 KYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQL-----N------------- 707 (872)
Q Consensus 646 ~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~-----~------------- 707 (872)
+-++.++..|+..++.+++..++..+...+..++..+...-..-.+.|+.-|+..|..+.. .
T Consensus 308 ~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~ 387 (441)
T PF12054_consen 308 KKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLR 387 (441)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchh
Confidence 3455667777777777888889999999999988877543334456788888877753210 0
Q ss_pred ---------------CC------CchhHHHHHHHHHHhhccchhhhHHHH
Q 002877 708 ---------------RS------VKPPILSCFGDIALAIGVHFEKYVPHA 736 (872)
Q Consensus 708 ---------------~~------~~~~~~~~l~~l~~~~~~~~~~~l~~i 736 (872)
++ .|..+..+|..|+..+|+.+..-+|.+
T Consensus 388 k~~~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~L 437 (441)
T PF12054_consen 388 KEEDKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPKL 437 (441)
T ss_pred hhcccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHH
Confidence 00 245667788888888887766555554
No 221
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.55 Score=49.46 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=97.1
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhccCCCCCcc
Q 002877 371 PFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA-MRDENNHVKDTTAWTLSRIFELLHCPATGFS 449 (872)
Q Consensus 371 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
.++.+.+.+.++-.|+++++.++.---+.+ . . .++..++.. .+|.+..||++|.-++|-++-.-+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTg-n--~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------- 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTG-N--L----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------- 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCC-c--c----hhHhhhheeecccCchHHHHHHHHheeeeEecCc-------
Confidence 457777888889999999887776444433 1 1 233333333 689999999999999987652222
Q ss_pred ccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHH
Q 002877 450 VISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAA 527 (872)
Q Consensus 450 ~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 527 (872)
..+...++.+.+ |+.||...+.+++-.|... + ....-.++..|.. | .+.-||+.|
T Consensus 585 --------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~------G---~~~a~diL~~L~~-----D-~~dfVRQ~A 641 (926)
T COG5116 585 --------DLLVGTVELLSESHNFHVRAGVAVALGIACAGT------G---DKVATDILEALMY-----D-TNDFVRQSA 641 (926)
T ss_pred --------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCC------c---cHHHHHHHHHHhh-----C-cHHHHHHHH
Confidence 234444555555 8999999999999888654 2 2233444444433 3 334579999
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Q 002877 528 YETLNEVVRCSNITETSQIIAELLPAIMGRL 558 (872)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l 558 (872)
.-+++-+...+. ++..|-+..+...+.+.+
T Consensus 642 mIa~~mIl~Q~n-~~Lnp~v~~I~k~f~~vI 671 (926)
T COG5116 642 MIAVGMILMQCN-PELNPNVKRIIKKFNRVI 671 (926)
T ss_pred HHHHHHHHhhcC-cccChhHHHHHHHHHHHH
Confidence 999988887776 555555555544444433
No 222
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.01 E-value=14 Score=42.27 Aligned_cols=132 Identities=11% Similarity=0.181 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 002877 578 LQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR-SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQ 656 (872)
Q Consensus 578 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 656 (872)
++....-+++.++-.-+. .+...++.+.+-|.-. ...+|...+.+++.++..+..... ..+|.|.
T Consensus 947 vra~~vvTlakmcLah~~----------LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d----~YiP~I~ 1012 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDR----------LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD----RYIPMIA 1012 (1529)
T ss_pred HHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH----HhhHHHH
Confidence 444555566666544333 3445667676666544 456777777777887766544444 4566666
Q ss_pred hhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccch
Q 002877 657 MGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHF 729 (872)
Q Consensus 657 ~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 729 (872)
..|.+.. .-+|..++..|+++.+. .+..|-..++-.++-.|-+. +..+|..+=.+++.+...-.+.|
T Consensus 1013 ~~L~Dp~-~iVRrqt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~--~edIr~~a~f~~~~vL~~~~P~~ 1079 (1529)
T KOG0413|consen 1013 ASLCDPS-VIVRRQTIILLARLLQF---GIVKWNGELFIRFMLALLDA--NEDIRNDAKFYISEVLQSEEPNF 1079 (1529)
T ss_pred HHhcCch-HHHHHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHccc--CHHHHHHHHHHHHHHHhhcCccc
Confidence 7777764 44899999998888653 24445444444444334444 78899999999999887644433
No 223
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=93.98 E-value=11 Score=40.86 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchh-hhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHH
Q 002877 694 MSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFE-KYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAY 772 (872)
Q Consensus 694 ~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 772 (872)
+..+.+.+...+.+++-.....+|+|.|+.++.+... .|+-.++.-++..+..+.+.++ +. -.-
T Consensus 483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdn------------KA---VvA 547 (1053)
T COG5101 483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDN------------KA---VVA 547 (1053)
T ss_pred HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCc------------ch---hhe
Confidence 4556666777766666777889999999988876654 5888888888888776554431 00 011
Q ss_pred HhHhhccchhhh--hhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhc--cCchHHHHHHHH
Q 002877 773 SGILQGFKSARA--EVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLF--KDSSFCNDFMSE 846 (872)
Q Consensus 773 ~~~~~~l~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~~~v~~ll~~ 846 (872)
+.+.-.+|+... ..-..|+.+++..+.....+ .++.++.+|+..+-.++..|+.-..-+. ..++|+..+++.
T Consensus 548 SnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE--~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirn 623 (1053)
T COG5101 548 SNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHE--DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRN 623 (1053)
T ss_pred cceeeeeccchHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHh
Confidence 123333343311 11223445555444443222 5799999999999999999886533222 235677777776
No 224
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.90 E-value=5.1 Score=44.30 Aligned_cols=249 Identities=13% Similarity=0.117 Sum_probs=136.4
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQN-LPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~-~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
.|+.+.|..+++++..+|-.....+....-++ .-..+.+|-.+... +...... +++. +.+.
T Consensus 239 ~el~~~l~k~l~~~~~~rp~~~~l~~~~ff~D~~~~aLrfLD~l~~k-dn~qKs~-----Flk~------------Ls~~ 300 (700)
T KOG2137|consen 239 SELRESLKKLLNGDSAVRPTLDLLLSIPFFSDPGLKALRFLDDLPQK-DNSQKSS-----FLKG------------LSKL 300 (700)
T ss_pred HHHHHHHHHHhcCCcccCcchhhhhcccccCCchhhhhhhccccccc-CcHHHHH-----HHHH------------HHHh
Confidence 47888999999999999984444433322221 12223333333331 1112222 2222 1345
Q ss_pred hhcCChHH-HHHHHHHHHHhhcCCC-hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHH
Q 002877 82 WLAIDISY-KSQVKDLLLRTLASPV-PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGY 159 (872)
Q Consensus 82 w~~l~~~~-~~~i~~~Ll~~l~~~~-~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 159 (872)
|+.++.-. .+.|...|...|.... -.+-.-....|++-..+. .--+.+++.|...+..+ .+...+-..++-+..
T Consensus 301 ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~---~~~~~~~p~l~pi~~~~-~~~~~~l~i~e~mdl 376 (700)
T KOG2137|consen 301 IPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQN---EFGPKMLPALKPIYSAS-DPKQALLFILENMDL 376 (700)
T ss_pred hccCCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchh---hhhhhhhHHHHHHhccC-CcccchhhHHhhHHH
Confidence 66666533 3456666666554421 111111112222111110 11345677777766643 023334344444444
Q ss_pred hhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-hcCCcHHHH
Q 002877 160 VCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCET-AKSKEVEIR 238 (872)
Q Consensus 160 l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~~~ 238 (872)
|.+...+ .+....++|.+...+++ .+..++..+++.+.++.+.++-.+.+ +.+++.+-+. +...+..++
T Consensus 377 L~~Kt~~----e~~~~~IlplL~~S~~~--~~~~iQ~~~L~~lptv~e~iD~~~vk----~~ilP~l~~l~~~tt~~~vk 446 (700)
T KOG2137|consen 377 LKEKTPP----EEVKEKILPLLYRSLED--SDVQIQELALQILPTVAESIDVPFVK----QAILPRLKNLAFKTTNLYVK 446 (700)
T ss_pred HHhhCCh----HHHHHHHHHHHHHHhcC--cchhhHHHHHHhhhHHHHhccHHHHH----HHHHHHhhcchhcccchHHH
Confidence 5555532 45578899999999998 67899999999999988876644333 3366655544 345688999
Q ss_pred HHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhH
Q 002877 239 QAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFW 286 (872)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l 286 (872)
..++-|+..++...... ..++.+ .-+..+++..++.+....+...
T Consensus 447 vn~L~c~~~l~q~lD~~--~v~d~~-lpi~~~~~~~dp~iv~~~~~i~ 491 (700)
T KOG2137|consen 447 VNVLPCLAGLIQRLDKA--AVLDEL-LPILKCIKTRDPAIVMGFLRIY 491 (700)
T ss_pred HHHHHHHHHHHHHHHHH--HhHHHH-HHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999998543222 122233 3334555666776665554433
No 225
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.89 E-value=0.7 Score=36.86 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=59.4
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHh
Q 002877 132 LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALT 211 (872)
Q Consensus 132 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 211 (872)
.+...+..++++ .+.+|..|+..|..+++.-. .- ....+.++..++..+++ +++-|-.+|+++|..++...+.
T Consensus 4 ~~~~al~~L~dp--~~PvRa~gL~~L~~Li~~~~--~~-~~~~~~il~l~l~~L~d--~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDP--LPPVRAHGLVLLRKLIESKS--EP-VIDIPKILDLFLSQLKD--EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCC--CcchHHHHHHHHHHHHHcCC--cc-hhhHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHHHHChH
Confidence 455667778888 78899999999999999753 11 45688999999999999 6789999999999998765443
No 226
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.6 Score=49.19 Aligned_cols=118 Identities=18% Similarity=0.099 Sum_probs=86.3
Q ss_pred hHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 369 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
+-..+.-.++|.+-.+|.||+.++|-++-.-. ..++..++.|. +.|+.||...+.+||-.+.....
T Consensus 553 v~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---- 619 (926)
T COG5116 553 VSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---- 619 (926)
T ss_pred HhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----
Confidence 33444444667788899999999998875332 23444555554 56789999999999988755443
Q ss_pred ccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhc
Q 002877 448 FSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAAD 514 (872)
Q Consensus 448 ~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~ 514 (872)
+..++.|-..+.| +.-||+.|+.+.+-+...+ .+.+.|.+..|...+.+.+.
T Consensus 620 ---------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~------n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 620 ---------KVATDILEALMYDTNDFVRQSAMIAVGMILMQC------NPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred ---------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc------CcccChhHHHHHHHHHHHHh
Confidence 2233333344557 7889999999999999887 78889999999998888886
No 227
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.81 E-value=7.6 Score=44.74 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=57.1
Q ss_pred hhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhhcc
Q 002877 366 VPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE---NNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 366 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~ 442 (872)
.+.+...+.......+-..+..++.+||.+.. +..++.+...+.+. ...+|.+|++++.+++...+
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 34444444444445556677888889998853 23455666666554 78899999999988765443
Q ss_pred CCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHH
Q 002877 443 CPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYY 483 (872)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~ 483 (872)
..+.+.+++.+.| ++.+|.+|...+..
T Consensus 557 --------------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 557 --------------EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp --------------HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 2455555555554 78899888776543
No 228
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.65 E-value=35 Score=45.57 Aligned_cols=315 Identities=13% Similarity=0.115 Sum_probs=164.3
Q ss_pred hHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhh----cCC-------cchhchHHHHHhhccCCCcchHHHHHH
Q 002877 322 LVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVART----VGD-------EVVPLVMPFVEANIVKSDWRCREAATY 390 (872)
Q Consensus 322 l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~----~~~-------~~~~~l~~~l~~~l~~~~~~~r~aal~ 390 (872)
.++.+...+...+ ..++.++..++..+... +|+ .+.+.+++.+.....++.|..|.+++.
T Consensus 985 ~ldal~~~l~~~~---------~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~ 1055 (3550)
T KOG0889|consen 985 FLDALVESLSHEN---------SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVN 1055 (3550)
T ss_pred HHHHHHHHHhccc---------hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCc
Confidence 4556666665321 34667777777666543 332 233455666666777889999999999
Q ss_pred HHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHH--------HHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHH
Q 002877 391 AFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHV--------KDTTAWTLSRIFELLHCPATGFSVISPENLQRILTV 462 (872)
Q Consensus 391 ~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~v--------r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (872)
+++.+.+......+..+...++..++..+.|...++ +......+..+...... ..........++..
T Consensus 1056 gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~-----~~~~~~~~~~~~~~ 1130 (3550)
T KOG0889|consen 1056 GIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELA-----EEERAKSAMNVFSP 1130 (3550)
T ss_pred eeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHH
Confidence 999988876422233344466666666665543222 22222222222221111 01222455677777
Q ss_pred HHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHH-HHhhccCC-CcchhHHHHHHHHHHHHHhcCC
Q 002877 463 LLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAEL-LRAADRTD-VGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 463 l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l-~~~l~~~~-~~~~~vr~~a~~al~~l~~~~~ 539 (872)
+...+.+ |..||..+..++..+.+.. +..+...+...-+.+ ...+.++- ..+...+....+++..++.-.+
T Consensus 1131 lv~eL~npN~~VR~~~~~~L~~i~~~s------~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p 1204 (3550)
T KOG0889|consen 1131 LVLELFNPNSDVREFSQKLLRLISELS------GKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGP 1204 (3550)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCC
Confidence 7777777 9999999999999999876 333333333333322 22222111 1234456777777777777665
Q ss_pred Ccc--cHHHHH---HHHHHHHHHHHHHHhhhhcCc---chhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHH
Q 002877 540 ITE--TSQIIA---ELLPAIMGRLGQTLELQIVSS---DDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIM 611 (872)
Q Consensus 540 ~~~--~~~~~~---~l~~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 611 (872)
.- +.+-+. .....+.+........ .... ........+|..+..++........- ......++-+.++
T Consensus 1205 -~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~---~~~~~~~~r~kii 1279 (3550)
T KOG0889|consen 1205 -CLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDF---RTPQHAELREKII 1279 (3550)
T ss_pred -cccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccc---cchhhhhhhhHHH
Confidence 21 111111 1122221111110000 0000 01111122344555555554433222 1114566778999
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcc
Q 002877 612 VLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQN 661 (872)
Q Consensus 612 ~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 661 (872)
..+...+....+++.+.+..++......-...-...+...+-.++..+.+
T Consensus 1280 ~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d 1329 (3550)
T KOG0889|consen 1280 AVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSD 1329 (3550)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhH
Confidence 99999999988999888887776654331111123344445334444433
No 229
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.45 E-value=1.4 Score=39.70 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=84.3
Q ss_pred ccHHHHHHHHHHHhh------------------c-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhc
Q 002877 454 ENLQRILTVLLESIK------------------D-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAAD 514 (872)
Q Consensus 454 ~~~~~~l~~l~~~l~------------------d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~ 514 (872)
+.++.++|.+..... | .-.+|..|..++.++.+.+ ...+. +..+++.+...+.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~------~~~~~--~~~~~~~v~~GL~ 76 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTC------LSRID--ISEFLDRVEAGLK 76 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHST------CSSS---HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHH------HHhCC--HHHHHHHHHhhcC
Confidence 466778888775441 1 3468999999999999987 44443 5566788888886
Q ss_pred cCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcC
Q 002877 515 RTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFS 594 (872)
Q Consensus 515 ~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 594 (872)
| +..++.-++..+..++...| ......++.+.+++-..+..-.....+. .+-+...+....++.++..+-..++
T Consensus 77 --D--~~DIk~L~~~~l~kl~~~~p-~~v~~~Ld~l~~~l~~~L~~k~k~~Avk-QE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 77 --D--EHDIKMLCHLMLSKLAQLAP-EEVLQRLDSLVEPLRKTLSKKLKENAVK-QEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp --S---HHHHHHHHHHHHHHHHS-H-HHHHHCCTTTHHHHHHHHH----TTS-H-HHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred --C--cHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHhhccCCCCccc-ccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3 45679999999999999988 7776777777777766665443322111 2234556677777888877766665
Q ss_pred C
Q 002877 595 S 595 (872)
Q Consensus 595 ~ 595 (872)
.
T Consensus 151 ~ 151 (169)
T PF08623_consen 151 G 151 (169)
T ss_dssp S
T ss_pred c
Confidence 4
No 230
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=1.7 Score=44.37 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=100.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhcc
Q 002877 412 FDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYED 490 (872)
Q Consensus 412 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~ 490 (872)
+.-++..+++.+..||..|...+-.+....+. ........+++.+...+.| +..||.....++..+.....
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~-------~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~- 131 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPA-------ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC- 131 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChH-------HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc-
Confidence 34566678999999999999999888776443 3444666778888888888 88999998888877665542
Q ss_pred CCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Q 002877 491 AGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQ 560 (872)
Q Consensus 491 ~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~ 560 (872)
+..+.|++.-+++-+...+.... ..+|..++..+..++..++ ..+..+...+++.+.+.+..
T Consensus 132 ----~e~~sp~~~l~~~yi~~AMThit---~~i~~dslkfL~~Ll~~~~-p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 132 ----KEDQSPMVSLLMPYISSAMTHIT---PEIQEDSLKFLSLLLERYP-DTFSRYASKILENFKDVISK 193 (393)
T ss_pred ----hhhhcchHHHHHHHHHHHHhhcc---HHHHHhhHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHH
Confidence 44478999999998888876433 5569999999999999998 77766666666666555443
No 231
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.16 E-value=0.2 Score=32.93 Aligned_cols=29 Identities=21% Similarity=0.536 Sum_probs=27.4
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIF 438 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 438 (872)
..+|.+++.|.++++.++..|+|+|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999986
No 232
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=27 Score=42.69 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHhhc-CCcchhchHHHHHhhcc-CCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHH
Q 002877 348 MAGGTCLGLVARTV-GDEVVPLVMPFVEANIV-KSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNH 425 (872)
Q Consensus 348 ~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~ 425 (872)
.++.-|.+.++... +....+.++..+..... +..|++|.+.+..+..+.-....-......+.+...+...+.|.+-.
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~ 1584 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIE 1584 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHH
Confidence 44455555555554 45667777777775443 45799999988887776533211123345668888899999999889
Q ss_pred HHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH
Q 002877 426 VKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL 502 (872)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~ 502 (872)
||..|+.++.-+...-.. ...+..-......... +......|+.+++.++-.+ |..+..++
T Consensus 1585 vre~Aa~~Lsgl~~~s~~----------~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vlaf------Py~vP~wi 1648 (1710)
T KOG1851|consen 1585 VREEAAKCLSGLLQGSKF----------QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAF------PYVVPLWI 1648 (1710)
T ss_pred HHHHHHHHHHHHHhcccc----------ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhc------cccchhhh
Confidence 999999998877643332 0111111222222221 3334457778899998887 66666666
Q ss_pred HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 503 TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 503 ~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
+..+..+....+ +...+++.+-+++..+-+...
T Consensus 1649 p~~L~~Ls~fa~----e~~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1649 PKPLMNLSSFAR----ESAAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred HHHHHHHHhhcC----CchHHHHHHHHHHHHHHHHhh
Confidence 666666555544 333456677666666655443
No 233
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.07 E-value=12 Score=38.50 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=112.0
Q ss_pred CChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCC--CC
Q 002877 51 KPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQ--KQ 128 (872)
Q Consensus 51 ~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~ 128 (872)
.+.+.|.-+++++.+.+++....+... ...|- ...+..+...|+.+-. ++.+--.++.++...++++.-. --
T Consensus 88 L~fEsrKdv~~if~~llr~~~~~~~~p-~v~yl---~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL 161 (335)
T PF08569_consen 88 LDFESRKDVAQIFSNLLRRQIGSRSPP-TVDYL---ERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIIL 161 (335)
T ss_dssp S-HHHHHHHHHHHHHHHT--BTTB--H-HHHHH---HT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred CCCcccccHHHHHHHHHhhccCCCCCc-hHHHH---HhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHh
Confidence 578899999999888886543221100 01110 0111234444555444 4445566666666665543100 01
Q ss_pred chHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccC---ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 002877 129 WPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEIS---HQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNA 205 (872)
Q Consensus 129 ~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~ 205 (872)
+++.+-.+.+..+.+ +-++-.-|+.++..+...-. .+.+ ..+.+.++..+..++.+ ++--.|..+++.|+.+
T Consensus 162 ~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl-~~n~d~ff~~~~~Ll~s--~NYvtkrqslkLL~el 236 (335)
T PF08569_consen 162 YSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFL-SNNYDRFFQKYNKLLES--SNYVTKRQSLKLLGEL 236 (335)
T ss_dssp TSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHCT---SSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHccC--CCeEeehhhHHHHHHH
Confidence 123344466777777 77777788888887766531 3445 66778888888888877 6889999999999998
Q ss_pred HHHHHhhhh---hhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Q 002877 206 LDFALTNFQ---NEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 206 ~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (872)
+.- +.++. .....+.-+..+..++.++...++..|+.++.-++..
T Consensus 237 lld-r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 237 LLD-RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHc-hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 731 11111 1111123567788888999999999999999988865
No 234
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.01 E-value=1.2 Score=35.50 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=57.4
Q ss_pred HHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 372 FVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 372 ~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
.....++|+..-+|-.++..|..+..... .....++.++..++..++|+++.|--.|..++..++...++
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34455678888899999999999987643 23345778999999999999999999999999999987764
No 235
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.98 E-value=0.2 Score=32.85 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.5
Q ss_pred CchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 002877 836 DSSFCNDFMSECLRSDDEQLKETAGWTQGMINR 868 (872)
Q Consensus 836 ~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 868 (872)
..+.++.|++. +++++++++..|+||++.+++
T Consensus 10 ~~g~i~~Lv~l-l~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 10 EAGGIPPLVQL-LKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HTTHHHHHHHH-TTSSSHHHHHHHHHHHHHHHT
T ss_pred HcccHHHHHHH-HcCCCHHHHHHHHHHHHHHhC
Confidence 34568888886 889999999999999999873
No 236
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=13 Score=38.79 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHH
Q 002877 386 EAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLE 465 (872)
Q Consensus 386 ~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 465 (872)
.+|+..+-.+++..+ -..+-.-+.++..++++|+-++...-..+...+-+++-+... ...-.-..++..|++
T Consensus 281 rva~ylLlNlAed~~-~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eN-------K~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDIS-VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDEN-------KIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHhhhhh-HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccc-------hHHHHhccHHHHHHH
Confidence 456677777787664 334434458889999999888877766666666666544432 111122357778888
Q ss_pred Hhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh-HHHHHHHHHHhhc
Q 002877 466 SIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY-LTSIIAELLRAAD 514 (872)
Q Consensus 466 ~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~-~~~il~~l~~~l~ 514 (872)
.+.. ++..+......+-++.-.. ...... -...+|.+...++
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~-------glr~KMv~~GllP~l~~ll~ 396 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDS-------GLRPKMVNGGLLPHLASLLD 396 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhccccc-------cccHHHhhccchHHHHHHhC
Confidence 8877 8998888887776665432 122222 2356666766665
No 237
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=29 Score=42.42 Aligned_cols=80 Identities=11% Similarity=0.209 Sum_probs=58.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccc
Q 002877 609 QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLP 688 (872)
Q Consensus 609 ~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 688 (872)
++...++.-..+.....|-.|+..+..+....|+...+.+++.+|+|.+.+.+.++ ++...+-..+..+-...|+.+..
T Consensus 1541 pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~-~Ve~~~q~li~q~e~~lGE~l~~ 1619 (1621)
T KOG1837|consen 1541 PLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDD-EVECLCQKLIRQLEEVLGEPLQS 1619 (1621)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhchhhhh
Confidence 34444444445556788888999999999999999999999999999999987543 46555555666666666765444
Q ss_pred c
Q 002877 689 F 689 (872)
Q Consensus 689 ~ 689 (872)
|
T Consensus 1620 y 1620 (1621)
T KOG1837|consen 1620 Y 1620 (1621)
T ss_pred c
Confidence 3
No 238
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.83 E-value=7.2 Score=39.95 Aligned_cols=259 Identities=10% Similarity=0.105 Sum_probs=125.0
Q ss_pred CCcchHHHHHHHHHHhhcCC--CccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH
Q 002877 380 SDWRCREAATYAFGSVLEGP--TIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL 456 (872)
Q Consensus 380 ~~~~~r~aal~~l~~i~~~~--~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (872)
+.|..-......+-.+.... .++..+.|++ ..+-.|+..+++++|+-|+..--.|-++..-+.. ...++
T Consensus 144 ~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~--------~r~fi 215 (457)
T KOG2085|consen 144 PAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLV--------HRPFI 215 (457)
T ss_pred CCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh--------hHHHH
Confidence 34766555554444444332 2233455666 6667788888999999998887777776653321 22333
Q ss_pred HHHHHHHH-HHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCc-hhhHHHHHHHHHHhhccCCCcchhHHHHHHHHH
Q 002877 457 QRILTVLL-ESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLL-SPYLTSIIAELLRAADRTDVGGSKLRSAAYETL 531 (872)
Q Consensus 457 ~~~l~~l~-~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l-~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al 531 (872)
..-+..++ ..+.+ +..+. .-...++.+..++. -.+ ..+.--++..++..-....-... .....-|+
T Consensus 216 rk~iNNif~~FIyEte~hnGIa-ELLEIlgSiIngfA------lPlKEEhkiFL~rvLipLhk~k~l~~y--h~QLaYci 286 (457)
T KOG2085|consen 216 RKSINNIFLRFIYETERHNGIA-ELLEILGSIINGFA------LPLKEEHKLFLVRVLIPLHKPKSLSLY--HKQLAYCI 286 (457)
T ss_pred HHhhcchhhhhcccccccCCHH-HHHHHHHHhcCccc------CcchhHHHHHHHHhhhccccCCCcccc--ccccceee
Confidence 33332222 22221 22221 12333444444331 111 12222222222222111000000 01111122
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHH
Q 002877 532 NEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIM 611 (872)
Q Consensus 532 ~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 611 (872)
..+++..+ ...+.++-.++..|-.+... . ....+.-+..+.....+. .+..-..+++
T Consensus 287 vQfveKd~-----kl~~~VIrglLK~WP~tnS~-----K--------EVmFL~ElEEILe~iep~-----eFqk~~~PLf 343 (457)
T KOG2085|consen 287 VQFVEKDP-----KLTETVIRGLLKYWPKTNSS-----K--------EVMFLNELEEILEVIEPS-----EFQKIMVPLF 343 (457)
T ss_pred eeeeccCc-----cccHHHHHHHHHhcCCCCCc-----c--------eeeeHhhHHHHHHhcCHH-----HHHHHhHHHH
Confidence 22222222 23334444444444432110 0 012234444455554443 5555566888
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH--HHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHH
Q 002877 612 VLFLRVFACRSSTVHEEAMLAIGA--LAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDV 678 (872)
Q Consensus 612 ~~l~~~l~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 678 (872)
..+-.++++....|.+.|+..+.. +.....+...-.+|-++|.|.+..+...+..+...++..+..+
T Consensus 344 ~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f 412 (457)
T KOG2085|consen 344 RQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTF 412 (457)
T ss_pred HHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988854 3444445555567778888877665554444444444444443
No 239
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=11 Score=37.47 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHH-HHHHHHhhhccc-chHhHHHHHHHHHHHHHHHhcCC
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPE-FYQYLQMGLQNS-EEYQVCAITVGVVGDVCRALDDK 685 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~ 685 (872)
+.++..+.+..+ ++.+-+.++.+++.++-..+++-..+++. .-....+.++.. ....++..||+.+.+++....+.
T Consensus 331 ~~ii~l~~~h~~--~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 331 DKIITLALRHSD--DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred HHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 455555544443 56788888888888888777766665552 333344444432 23468999999999999888777
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 002877 686 VLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 686 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
-.+++..=++.|+..-... ++..+..+-.++.+++.
T Consensus 409 ~~~~l~~GiE~Li~~A~~~--h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 409 RTILLANGIEKLIRTAKAN--HETCEAAAKAALRDLGC 444 (461)
T ss_pred cchHHhccHHHHHHHHHhc--CccHHHHHHHHHHhcCc
Confidence 7777777777777776666 77787777788877653
No 240
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=5.5 Score=48.27 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHH----HhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEF----AKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~----~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
+.-+..+++-+...+...|..|+.-++.+........ .|+...+++.+ . ...++.||......+..+....+
T Consensus 40 dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl---~-~d~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKL---I-IDEDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHH---h-cCccHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777789999999999999877544222 23333333333 2 34568899999999999999999
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhh--ccchhhhHHHHHHHHHHHHHhcccc--CC----Cch
Q 002877 684 DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAI--GVHFEKYVPHALQMMQEAAKACAQL--DM----EDE 755 (872)
Q Consensus 684 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~l~~i~~~l~~~~~~~~~~--~~----~d~ 755 (872)
..+.||+..+++..+-...+. +..+...|...+.+....- ......+-+.+.+.+.+.+..+... .+ ..+
T Consensus 116 k~lsp~LK~li~~wl~~~~d~--~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLKSLIPPWLGGQFDL--DYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHHhhhhhhhheeccc--chHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 999999999999877655544 5666666666665543311 1112223455555555553332111 00 112
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccchh---h--hhhhhhhH-HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcc
Q 002877 756 ELIDYGNQLRSSIFEAYSGILQGFKSA---R--AEVMMPYA-QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPN 829 (872)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~~~~~~-~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 829 (872)
|.+.....+....+.++..+....+.. . .+.++-+. ...++.+ +.. ..+.++.+...++-.+++....-
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~---~~~--k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKL---LKS--KSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHH---hcC--CCcchhHHHHHHHHHHHhhhHHh
Confidence 222222233344455555555443332 1 22233222 2222222 222 45778887777777776666654
Q ss_pred hhhhccCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 002877 830 TKLLFKDSSFCNDFMSECLRSDDEQLKETAGWT 862 (872)
Q Consensus 830 ~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~ 862 (872)
.. ......+++.+....++.+ +.-.+.|.
T Consensus 269 ~~--~~~~~~l~~~~~~~~~~~d--~~c~~~we 297 (1312)
T KOG0803|consen 269 VM--ESEKNYLKPVLLGSIDSLD--HVCSSMWE 297 (1312)
T ss_pred cc--hhhhhHhhHHHHccccccc--cccHHHHH
Confidence 12 2234456666665444444 44444453
No 241
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.34 E-value=17 Score=38.43 Aligned_cols=302 Identities=12% Similarity=0.118 Sum_probs=142.7
Q ss_pred hhhHHHHHHHHHhcccC----CCC-CHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHhhcCC--cHHHHHHH
Q 002877 171 QDEVNAVLTAVVQGMNL----AEH-SAEVRLAATRALYNALDFA--LTNFQNEMERNYIMKVVCETAKSK--EVEIRQAA 241 (872)
Q Consensus 171 ~~~~~~l~~~l~~~l~~----~~~-~~~vr~~al~~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~ 241 (872)
..+++.+++.+..-+.. .++ +..+...|+++|+.++... -..+..+ ...+++......+.++ +-.+....
T Consensus 34 ~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d-~~~~~i~~~i~~l~~~~~~K~i~~~~ 112 (372)
T PF12231_consen 34 QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDD-FASFIIDHSIESLQNPNSPKSICTHY 112 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChH-HHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44455555555544433 123 6788889999999987431 1122221 1223444444444322 22333333
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcC--CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH
Q 002877 242 FECLVSIASTYYEVLEPYMQTLFELTSNAVKG--DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKAR 319 (872)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (872)
+.++.. -+..++.+.......+-..+..+.+ ....+-...+..+..+....+. .+....
T Consensus 113 l~~ls~-Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~------------------~M~~~~ 173 (372)
T PF12231_consen 113 LWCLSD-QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ------------------QMIKHA 173 (372)
T ss_pred HHHHHc-CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 333332 1112333333333222222333333 4455667777777777765432 233334
Q ss_pred HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCc--chhchHHHHHhhccCCCcchHHHHHHHHHHhhc
Q 002877 320 SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDE--VVPLVMPFVEANIVKSDWRCREAATYAFGSVLE 397 (872)
Q Consensus 320 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 397 (872)
..-+|.++..+.... -.+|..|..++..+...++.. +...+.+.+...+.+ + ...+.-+.-+..+..
T Consensus 174 ~~W~~~l~~~l~~~~---------k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~-~-~~~~~~~~~L~~mi~ 242 (372)
T PF12231_consen 174 DIWFPILFPDLLSSA---------KDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLEN-G-KLIQLYCERLKEMIK 242 (372)
T ss_pred HHHHHHHHHHHhhcc---------hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccccc-c-cHHHHHHHHHHHHHh
Confidence 445566665555322 356777777777776666511 111111111111111 1 111222222222222
Q ss_pred CCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHH
Q 002877 398 GPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEK 476 (872)
Q Consensus 398 ~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~ 476 (872)
.- .-..+..+++..++..|.++- ....++++..+...-.++++ ++.+|..
T Consensus 243 ~~---~~~~~a~~iW~~~i~LL~~~~--------------------------~~~w~~~n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 243 SK---DEYKLAMQIWSVVILLLGSSR--------------------------LDSWEHLNEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred Cc---CCcchHHHHHHHHHHHhCCch--------------------------hhccHhHhHHHHHHHHHhcCCCHHHHHH
Confidence 20 111123334444333332210 13456788888888888988 9999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCc--chhHHHHHHHHHHHHH
Q 002877 477 VCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVG--GSKLRSAAYETLNEVV 535 (872)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~--~~~vr~~a~~al~~l~ 535 (872)
|..+...++..... ........+.-++..+...+.+.... ...++..++..+..+.
T Consensus 294 A~~aW~~liy~~~~---~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 294 AFKAWRRLIYASNP---NELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHHHHhcC---CccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 99999999885531 02222334444555554444432211 1134555555555443
No 242
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=3.1 Score=42.54 Aligned_cols=132 Identities=11% Similarity=0.172 Sum_probs=102.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHh-cCCcccc
Q 002877 611 MVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL-DDKVLPF 689 (872)
Q Consensus 611 ~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~ 689 (872)
+.-++..+...+..+|..|+.-+..+....+....-.+..+++.+.....+. +..+|.....++..++... .+.+.|+
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhcch
Confidence 3445556777789999999999988887755555556667777776666654 4569999999988866554 3557899
Q ss_pred HHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q 002877 690 CDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 690 ~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~ 745 (872)
..-+++.+...+... .++++..++..+..+...+++.+..+...+++-+.....
T Consensus 139 ~~l~~~yi~~AMThi--t~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHI--TPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHHHHHHhhc--cHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 999999999888876 788999999999999999999888877777766665543
No 243
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.21 E-value=15 Score=41.83 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=68.6
Q ss_pred cchhhhHHHHHHHHHhhcC--C---------cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHH
Q 002877 344 WNISMAGGTCLGLVARTVG--D---------EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGF 412 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~--~---------~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~ 412 (872)
..++..|.-++..+..... . .+.+.+...+.......+-..+...+.+||.+..... ++.+.
T Consensus 411 ~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~-------i~~l~ 483 (574)
T smart00638 411 PYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSS-------IKVLE 483 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhH-------HHHHH
Confidence 4567777777777776431 1 2223333334444434455556777888887754221 22222
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHH
Q 002877 413 DFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYY 483 (872)
Q Consensus 413 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~ 483 (872)
+.+. .-.+..+.+|.+|++++.+++...+. .+-+.++..+.+ ++.+|.+|+..+..
T Consensus 484 ~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~--------------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 484 PYLE-GAEPLSTFIRLAAILALRNLAKRDPR--------------KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HhcC-CCCCCCHHHHHHHHHHHHHHHHhCch--------------HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 3322 22345678999999999999876654 233334444443 78899988886643
No 244
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.14 E-value=12 Score=36.13 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=79.7
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHH
Q 002877 40 LSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKI 119 (872)
Q Consensus 40 ~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i 119 (872)
..+..+|.+.+.+..-|.-|...|||..... . .+.+.+.+.+.+...++.++.+++..
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------------~----i~~i~ka~~d~s~llkhe~ay~LgQ~ 63 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------------A----IKAITKAFIDDSALLKHELAYVLGQM 63 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCChH------------------H----HHHHHHhcccchhhhccchhhhhhhh
Confidence 4566777776667888999988888876421 1 23455666666777777777777664
Q ss_pred HHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHH
Q 002877 120 ASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAAT 199 (872)
Q Consensus 120 ~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al 199 (872)
. ..+-++.+...+.+.+..+.+|+.|..+|+.+... + +++.+.+..++ +-..|+....
T Consensus 64 ~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~---~---------~~~~l~k~~~d--p~~~v~ETc~ 121 (289)
T KOG0567|consen 64 Q--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP---E---------SLEILTKYIKD--PCKEVRETCE 121 (289)
T ss_pred c--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcch---h---------hHHHHHHHhcC--CccccchHHH
Confidence 3 23457788888877655788999999999877622 1 22333444455 6677887755
Q ss_pred HHHHH
Q 002877 200 RALYN 204 (872)
Q Consensus 200 ~~l~~ 204 (872)
-++..
T Consensus 122 lAi~r 126 (289)
T KOG0567|consen 122 LAIKR 126 (289)
T ss_pred HHHHH
Confidence 55543
No 245
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=92.10 E-value=16 Score=37.73 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCC--CcchhHHHHHHHHHHH
Q 002877 457 QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTD--VGGSKLRSAAYETLNE 533 (872)
Q Consensus 457 ~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~--~~~~~vr~~a~~al~~ 533 (872)
++++..+...+.+ +......+.-+++++++.- ..-+.-.-.++++.++.++.+.. +++..++++++.|+..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D------~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRn 387 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRD------DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRN 387 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc------hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHh
Confidence 3477777777776 8888888899999999752 11111123466777777664321 2345556677777766
Q ss_pred HH
Q 002877 534 VV 535 (872)
Q Consensus 534 l~ 535 (872)
++
T Consensus 388 l~ 389 (604)
T KOG4500|consen 388 LM 389 (604)
T ss_pred cc
Confidence 54
No 246
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=91.68 E-value=18 Score=43.64 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=59.1
Q ss_pred HHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHH
Q 002877 504 SIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETS-QIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASL 582 (872)
Q Consensus 504 ~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 582 (872)
..++.+++.+--.+++..+.|..|-.+|..+|...+ ++-. .-...+++.+-+ + ...
T Consensus 235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqP-D~kr~RRE~kvL~lLeQ---------------------I-raY 291 (2195)
T KOG2122|consen 235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQP-DEKRGRREKKVLHLLEQ---------------------I-RAY 291 (2195)
T ss_pred cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCc-chhhhHHHHHHHHHHHH---------------------H-HHH
Confidence 345666666655565567779999999999999888 4321 222222222211 1 233
Q ss_pred HHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC-ChhHHHHHHHHHHHH
Q 002877 583 CGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR-SSTVHEEAMLAIGAL 636 (872)
Q Consensus 583 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l 636 (872)
|.++....+.-++.. .-.++-.+|...+..+++-. +.+.| .++.-||.+
T Consensus 292 C~~~~~~lqar~~~~----apa~~~H~lcaA~~~lMK~SFDEEhR-~aM~ELG~L 341 (2195)
T KOG2122|consen 292 CETCWTWLQARGPAI----APASDEHQLCAALCTLMKLSFDEEHR-HAMNELGGL 341 (2195)
T ss_pred HHHHHHHHHhcCCCC----CCcccchhhHHHHHHHHHhhccHHHH-HHHHHhhhH
Confidence 556666666555521 12235567777777777655 44444 344444443
No 247
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=91.66 E-value=12 Score=35.17 Aligned_cols=191 Identities=13% Similarity=0.168 Sum_probs=103.6
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHH
Q 002877 614 FLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGI 693 (872)
Q Consensus 614 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i 693 (872)
+...++-........++..++.+....+....+++..++..+.+.-.+. +.+.+..+=.++|..++++|.+ . +-.+
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~-~f~~~~~~e~~lgaAi~amGpe--~-vL~~ 80 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESE-DFSFRKELEQVLGAAIRAMGPE--Q-VLSI 80 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCC-CcchHHHHHHHHHHHHHHCCHH--H-HHHH
Confidence 3344444445566778888999998888888888888888887765554 4568888889999999998832 0 1122
Q ss_pred HHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhcccc--CCCchHHHHHHHHHHHHHHHH
Q 002877 694 MSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQL--DMEDEELIDYGNQLRSSIFEA 771 (872)
Q Consensus 694 ~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~ 771 (872)
+|.- +..++....-|.-.+-.+.+- ..+..+.-|.+.++|.....-+...+. .....+. ..-++...-
T Consensus 81 lPLn---l~~~~~~~~~raWLLPlLr~~--i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~a-----k~~~~l~~Q 150 (198)
T PF08161_consen 81 LPLN---LDNADDSQPGRAWLLPLLRDH--IRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEA-----KIYETLVQQ 150 (198)
T ss_pred CCCC---ccCCCcCCcccchhHHHHHHh--ccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHH-----HHHHHHHHH
Confidence 2211 111110111222222222221 134556666777777666543322110 0011111 122344455
Q ss_pred HHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 002877 772 YSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDL 822 (872)
Q Consensus 772 ~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l 822 (872)
+|+++-+.+....+ +...++.+-+.+...+.+ ..++|..++..+..+
T Consensus 151 lWslLP~FC~~P~D-~~~~F~~~a~~L~~~L~~---~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 151 LWSLLPGFCNYPTD-LAESFPSFAKLLGNALYD---QPDLRPIICQALRRL 197 (198)
T ss_pred HHHHhHHhcCCccc-HHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHH
Confidence 56666655543111 222235555556555554 478898888887665
No 248
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=0.4 Score=43.63 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=71.3
Q ss_pred HHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHh---hcc
Q 002877 651 FYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALA---IGV 727 (872)
Q Consensus 651 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~---~~~ 727 (872)
.+|.+...|...+.+ .+-.|-..+.++....++.+.|.+++++..|...|... +.++...++..+.++... .|.
T Consensus 115 yLp~F~dGL~e~~hp-yrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr--d~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHP-YRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR--DDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred HHHHHhhhhhhcCCC-cchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhccccch
Confidence 344444444443333 66777888888888889999999999999999999987 888889999999888765 468
Q ss_pred chhhhHHHHHHHHHHH
Q 002877 728 HFEKYVPHALQMMQEA 743 (872)
Q Consensus 728 ~~~~~l~~i~~~l~~~ 743 (872)
.++||..+++|.+-..
T Consensus 192 aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLNTF 207 (262)
T ss_pred hhhhHHHHhhhhhhhh
Confidence 9999999999987654
No 249
>PF05536 Neurochondrin: Neurochondrin
Probab=91.43 E-value=27 Score=38.93 Aligned_cols=252 Identities=10% Similarity=0.034 Sum_probs=136.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCC
Q 002877 264 FELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSI 343 (872)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~ 343 (872)
++-++..++..+++=|..++-.+..+++...... ...+..++.+=+.++..|-.....+++. ..
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~---------------~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~ 70 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDS---------------QTRRRVFEAIGFKFLDRLLRTGSVPSDC-PP 70 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhH---------------HHHHHHHHhcChhHHHHHhcCCCCCCCC-CH
Confidence 3445555666667777777777777766422100 0001111222122222222222111110 11
Q ss_pred cchhhhHHHHHHHHHhhcC---CcchhchHHHHHhhccCCCc-chHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHh
Q 002877 344 WNISMAGGTCLGLVARTVG---DEVVPLVMPFVEANIVKSDW-RCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNA 418 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~---~~~~~~l~~~l~~~l~~~~~-~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~ 418 (872)
...+..|...|..++..-. ..-+-.-+|.+.+.+.+..- ....-++.+|..++.. ++.....+. ..++.+.+.
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHH
Confidence 2344555555555554110 11111235666666654443 5666778888888843 344444444 677788877
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCC
Q 002877 419 MRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSL 497 (872)
Q Consensus 419 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (872)
+.+ ++...+.|+.++..+........ .......+..+++.+...+.. ....+-..+..+..+.............
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~---~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~ 224 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKS---WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPP 224 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhh---hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCC
Confidence 766 77788889888888766544210 001233445666666665554 4555566788788887665210000122
Q ss_pred chhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 498 LSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 498 l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
-..+...+...+...+++.- ...-|..++.....+.+..|
T Consensus 225 ~~~W~~~l~~gl~~iL~sr~--~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 225 SPKWLSDLRKGLRDILQSRL--TPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred hhhhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhC
Confidence 23467777777777776433 23348899999999988877
No 250
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=43 Score=41.16 Aligned_cols=217 Identities=12% Similarity=0.061 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 002877 190 HSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSN 269 (872)
Q Consensus 190 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~ 269 (872)
-+...|..|+..|..++.-...+.... .-+.....+.++..+++.++|......+..++....+.+.+|++.+++..+-
T Consensus 53 kD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~ 131 (1312)
T KOG0803|consen 53 RDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLG 131 (1312)
T ss_pred cChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Confidence 466888889999998765322211100 1223455667778899999999999999999999999999999999998877
Q ss_pred HhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCccc-------CCC
Q 002877 270 AVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQ-------DDS 342 (872)
Q Consensus 270 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~-------d~~ 342 (872)
..-+.+..+...|..-.......++. ++....--+.+.+.+...+....++.-. ++.
T Consensus 132 ~~~d~~~~vs~aa~~sf~~~f~~ek~----------------~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~ 195 (1312)
T KOG0803|consen 132 GQFDLDYPVSEAAKASFKDGFAEEKD----------------RHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEEL 195 (1312)
T ss_pred eecccchHHHHHHHHHHHhhcChhhh----------------HHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHH
Confidence 77777777777776544433322110 1122222234555555554332222111 111
Q ss_pred Cc---chhhhHHHHHHHHHhhcCC--cch---h-----chHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH
Q 002877 343 IW---NISMAGGTCLGLVARTVGD--EVV---P-----LVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH 409 (872)
Q Consensus 343 ~~---~~r~~a~~~l~~l~~~~~~--~~~---~-----~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~ 409 (872)
.. .+-..+..++..+....+. ... + .--+.+-..+.+..+..|.+..-.+..+......-.+.+...
T Consensus 196 E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~ 275 (1312)
T KOG0803|consen 196 ESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKN 275 (1312)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhh
Confidence 11 2233444445555544441 111 1 112345556667778888888888887776653111222223
Q ss_pred hHHHHHHHhcCCCc
Q 002877 410 AGFDFLLNAMRDEN 423 (872)
Q Consensus 410 ~l~~~l~~~l~d~~ 423 (872)
.+-+.+.....+.+
T Consensus 276 ~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 276 YLKPVLLGSIDSLD 289 (1312)
T ss_pred HhhHHHHccccccc
Confidence 33344444444433
No 251
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.79 E-value=54 Score=41.19 Aligned_cols=193 Identities=12% Similarity=0.107 Sum_probs=118.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCC---ChhHhhHHHH
Q 002877 38 FLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASP---VPEARHTSAQ 114 (872)
Q Consensus 38 ~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~---~~~vr~~~~~ 114 (872)
....|...+.+. ..+++|++.++.+.+.+. .|..++.-.+-.-.+ ..+.+. +++-...+..
T Consensus 52 ~~~~l~s~~~~~-~~~p~rkL~s~~i~rl~~------------~gd~f~~~~~l~~c~---d~l~d~~~~~~q~k~~a~~ 115 (2067)
T KOG1822|consen 52 LEQQLISRLTNG-AGPPTRKLISVAIARLIS------------NGDSFSLYSRLNSCN---DFLSDGSPSDPQRKLAALS 115 (2067)
T ss_pred HHHHHHHHHccC-CCchhHHHHHHHHHHHHh------------ccchhhHHHHHHHhh---hhhhcCCCccHHHHHhhcc
Confidence 345666777763 578999999999988764 255555433333222 233342 3555566778
Q ss_pred HHHHHHHhhcCC--CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCH
Q 002877 115 VIAKIASIEIPQ--KQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSA 192 (872)
Q Consensus 115 ~l~~i~~~~~p~--~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~ 192 (872)
+++....+.++. ....+.+..+....+.. ..-.|...+..+...++..++..-.......+.-.....+.+ .+.
T Consensus 116 ~l~~~y~~~g~~~~~~~edt~~if~~~~k~n--~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld--~s~ 191 (2067)
T KOG1822|consen 116 CLGSLYEHYGRMIGRGLEDTVQIFTKLVKTN--ESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLD--RSF 191 (2067)
T ss_pred chHHHHHHhhHhhcchHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhh--hhH
Confidence 888888776653 24566776666666655 555677777777777776542111033344455555566666 466
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Q 002877 193 EVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 193 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (872)
.||.++.+|+..+...-...+. ..+.+......+......+.++|....+++..+...
T Consensus 192 ~v~iaa~rc~~a~s~~~~~~~~-~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 192 NVKIAAARCLKAFSNLGGPGLG-TSELETLASYCFKGIEISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred HHHHHhHHHHHHHHhhcCcccc-chhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhc
Confidence 7999999998887654333332 111122344455556667889999999998888764
No 252
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.36 E-value=31 Score=41.58 Aligned_cols=240 Identities=16% Similarity=0.198 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHH
Q 002877 190 HSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSK---EVEIRQAAFECLVSIASTYYEVLE-PYMQTLFE 265 (872)
Q Consensus 190 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~l~~ 265 (872)
+..+||...++++.++++..+...-. . ...+++.+...+... ..++...++.++.-+...+-..+. ..+..+++
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 57899999999999998755443211 1 123555555444322 445666778888777654432221 22334444
Q ss_pred HHHHH-hcCCChHHHHHHHHhHhHHhHhhhhhh---hh-----cCCCCCCCCCCchHHHHHhH-HhhHHHHHHHHhcccC
Q 002877 266 LTSNA-VKGDEEAVALQAVEFWSSICDEEIELQ---EF-----ENPETGDSDSPNYHFIEKAR-SSLVPMLLETLLKQEE 335 (872)
Q Consensus 266 ~~~~~-~~~~~~~~~~~al~~l~~l~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~ 335 (872)
.+... -+..|-++...|+..+-++.+.-.... .+ +.-+.+...-+ .+..+ +.+.-.++..+.+-.+
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~----~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMK----SKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhccccc----chhhhhhHHHHHHHHHHHHHhc
Confidence 33322 244677888888875556655422100 00 00011100000 11111 2344455566655443
Q ss_pred CcccCCCCcchhhhHHHHHHHHHhhcCCcchh---------chHHHHHhhcc--CCCcchH-------HHHHHHHHHhhc
Q 002877 336 DQDQDDSIWNISMAGGTCLGLVARTVGDEVVP---------LVMPFVEANIV--KSDWRCR-------EAATYAFGSVLE 397 (872)
Q Consensus 336 d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~---------~l~~~l~~~l~--~~~~~~r-------~aal~~l~~i~~ 397 (872)
|+ -..||..|.+.+-++....|..+-+ .++|.+...-. -.+|.-. +..+..++.++.
T Consensus 1008 ds-----r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIak 1082 (1610)
T KOG1848|consen 1008 DS-----RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAK 1082 (1610)
T ss_pred cc-----hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHH
Confidence 32 2389999999988888776544433 33444431110 1234332 356777777765
Q ss_pred CCCccc---------hhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhc
Q 002877 398 GPTIDK---------LAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELL 441 (872)
Q Consensus 398 ~~~~~~---------~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
-+. .. +......++.++.....|.++.+..++..++..+....
T Consensus 1083 lf~-e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1083 LFS-ENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHH-HHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 442 22 22234456666666778999999999999887765433
No 253
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.05 E-value=20 Score=34.98 Aligned_cols=199 Identities=15% Similarity=0.122 Sum_probs=107.6
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHH
Q 002877 470 APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAE 549 (872)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~ 549 (872)
+++.+.....++..++.. ++ ...+.++..+........ ...+..+...+..+.+..+ ..+ +++..
T Consensus 14 ~~~~~~~~L~~L~~l~~~-------~~---~~~~~v~~~L~~L~~~~~---~~~~~~~~rLl~~lw~~~~-r~f-~~L~~ 78 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACH-------KN---VCVPPVLQTLVSLVEQGS---LELRYVALRLLTLLWKAND-RHF-PFLQP 78 (234)
T ss_pred ChHHHHHHHHHHHHHhcc-------Cc---cchhHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHHhCc-hHH-HHHHH
Confidence 788888888888888754 21 334455555555544222 2223355666666666554 222 33333
Q ss_pred HHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHH-ccCChhHHHH
Q 002877 550 LLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF-ACRSSTVHEE 628 (872)
Q Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~v~~~ 628 (872)
++..+.-.... +..+.+...+.......++..++...++ +..++++.+..++ .+.+..++..
T Consensus 79 ~L~~~~~r~~~-------~~~~~~~~~~~~i~~a~s~~~ic~~~p~----------~g~~ll~~ls~~L~~~~~~~~~al 141 (234)
T PF12530_consen 79 LLLLLILRIPS-------SFSSKDEFWECLISIAASIRDICCSRPD----------HGVDLLPLLSGCLNQSCDEVAQAL 141 (234)
T ss_pred HHHHHHhhccc-------ccCCCcchHHHHHHHHHHHHHHHHhChh----------hHHHHHHHHHHHHhccccHHHHHH
Confidence 22221111110 1111122233333444566667655544 4557777788888 6667788888
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc--CCccccHHHHHHHHHHHhcCC
Q 002877 629 AMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD--DKVLPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 629 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~ 704 (872)
++.++..++..---.|......+.+.+ .....+.+....+.+++.+....- ++...+..+++..+.+.....
T Consensus 142 ale~l~~Lc~~~vvd~~s~w~vl~~~l----~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 142 ALEALAPLCEAEVVDFYSAWKVLQKKL----SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhc----CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 888888887544334444444444433 444456666666655554433221 344556677888888876655
No 254
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.99 E-value=28 Score=36.62 Aligned_cols=222 Identities=18% Similarity=0.142 Sum_probs=129.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHH---------HHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 11 AAQSADANIRNEAEANLRQLQQQNLPGFLLSLSV---------ELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 11 ~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~---------il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
-++++++++|..|...+.-+... +.++..+.+ -|...+....-|.-|..++|+.+..+...
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~-------- 102 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP-------- 102 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc--------
Confidence 46888899999999999887776 666665554 13333445677889999999887542110
Q ss_pred hhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCC-CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHh
Q 002877 82 WLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQ-KQWPELIRSLLNNMTQQDSLAALKQATLETLGYV 160 (872)
Q Consensus 82 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~-~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 160 (872)
..+| ..+-..++....++++..|+.+-+++.+++-.+ |. -.+-+-+..+.+.+.++ ....-+..+.++-.+
T Consensus 103 -~~~~----~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 103 -KEIP----RGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGGIRVLLRALIDG--SFSISESLLDTLLYL 174 (371)
T ss_pred -ccCC----HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHH
Confidence 1233 345556777777788999999999999999776 42 11233345566666554 333555666666666
Q ss_pred hhccC-ccccc-hhhHHHHHHHHHhcc-cCCCCCH--HHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHhhcCC
Q 002877 161 CEEIS-HQDLV-QDEVNAVLTAVVQGM-NLAEHSA--EVRLAATRALYNALDFALTN--FQNEMERNYIMKVVCETAKSK 233 (872)
Q Consensus 161 ~~~~~-~~~l~-~~~~~~l~~~l~~~l-~~~~~~~--~vr~~al~~l~~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~ 233 (872)
.+.-. ..++. ...++.++..+...- .....+. +.-..+.+++..++.--..- +....+ .-++.+...+..+
T Consensus 175 Ld~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p 252 (371)
T PF14664_consen 175 LDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLP 252 (371)
T ss_pred hCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCC
Confidence 65421 12220 123555555555441 0000122 22333444444433210000 111100 1355666777778
Q ss_pred cHHHHHHHHHHHHHHHHhh
Q 002877 234 EVEIRQAAFECLVSIASTY 252 (872)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~ 252 (872)
.+++|+..++.+..+....
T Consensus 253 ~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 253 NPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred CHHHHHHHHHHHHHHHCCC
Confidence 8999999999998887654
No 255
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=89.93 E-value=36 Score=37.76 Aligned_cols=283 Identities=13% Similarity=0.149 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhh-hhh--------hHHhHHHH
Q 002877 193 EVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTY-YEV--------LEPYMQTL 263 (872)
Q Consensus 193 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~--------~~~~l~~l 263 (872)
-.+.+++.|+..+.++++-.+...+..++. +...+....+.-.|.|+..+.-.. |.. .-.+++.+
T Consensus 174 ll~Rs~~~cl~~l~qflki~~qS~e~a~fy------~~g~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~i 247 (993)
T COG5234 174 LLKRSIFYCLFSLSQFLKICLQSVEVAQFY------LVGQENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVI 247 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhheecccceeE------EecccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHH
Confidence 446667777777666544321111000000 111234455566666666654332 211 12345567
Q ss_pred HHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHH-HHHHHhcccCCcccCCC
Q 002877 264 FELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPM-LLETLLKQEEDQDQDDS 342 (872)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-l~~~l~~~~~d~~~d~~ 342 (872)
++++....++.+..+|.++..-+..+...-+ +.-+..|++ ..+-..+. .+..+....+-.+-.|.
T Consensus 248 V~f~~~s~Ss~~~~~rf~~a~~~aki~srl~-------------w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel 313 (993)
T COG5234 248 VDFLLSSVSSIDSFVRFSAAKGLAKIISRLP-------------WNLAESFID-IIELMTENMFLSPLENTCDIIITNEL 313 (993)
T ss_pred HHHHHcCcccccHHHHHHHHhhHHHHHhhcc-------------cccHHHHHH-HHHhcccccchhhhhCccceeecchH
Confidence 7888777788888888877764444443211 110111221 11111111 22223222211111111
Q ss_pred CcchhhhHHHHHHHHHhhcCCcchh-chHHHHHhhcc--------CCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHH
Q 002877 343 IWNISMAGGTCLGLVARTVGDEVVP-LVMPFVEANIV--------KSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGF 412 (872)
Q Consensus 343 ~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~l~--------~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~ 412 (872)
.| ..+...+. ++...+-.+.. .+.+++...++ ......|+++++.+-++..+.+ +...+.+. .++
T Consensus 314 ~w---~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S-~s~~~~lqt~L~ 388 (993)
T COG5234 314 VW---HGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYS-KSAIEGLQTNLI 388 (993)
T ss_pred HH---HHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccc-cccchhHHHHHH
Confidence 22 22222222 44443322222 23444444433 1235678899888888877644 44444455 344
Q ss_pred HHHHH-hcCCCcHHHHHHHHHHHHHHHhhccCCCCC--------------c------------cccCcccHHHHHHH-HH
Q 002877 413 DFLLN-AMRDENNHVKDTTAWTLSRIFELLHCPATG--------------F------------SVISPENLQRILTV-LL 464 (872)
Q Consensus 413 ~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------------~------------~~~~~~~~~~~l~~-l~ 464 (872)
-.+++ .+-|++-.+|++|..++-.+.........+ . +.........++.. |+
T Consensus 389 hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslIN~~sv~r~s~csg~~~r~~~~~~k~~~CedVF~diLl 468 (993)
T COG5234 389 HLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRSCEDVFQDILL 468 (993)
T ss_pred HHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhccceecchhhhcchHHHHHhcCccccchHHHHHHHHHH
Confidence 55555 788999999999988776555441111100 0 00000111234444 66
Q ss_pred HHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHH
Q 002877 465 ESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIA 507 (872)
Q Consensus 465 ~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~ 507 (872)
+.+.. ++.++....+.+..+.+. +..+.-|+++|+.
T Consensus 469 ~Nl~H~~~~~k~~~~y~l~~liK~-------~~~~p~yl~~Il~ 505 (993)
T COG5234 469 TNLQHWDVKVKQLSAYSLRQLIKY-------PKELPIYLPPILD 505 (993)
T ss_pred hhhhccchhhhhhccccHHHHhcC-------cccCchhhhHHhh
Confidence 66666 778888888888888654 4444446665554
No 256
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.81 E-value=13 Score=32.90 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 607 ADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 607 ~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
....+..+..-+.+.++.+.-.|+.++..+++++|..|...+ ..++..|...+....+..|+...+.++...+..++.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 357788888888888999999999999999999998776433 356666766666645677999999999999888863
No 257
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=89.78 E-value=3 Score=32.91 Aligned_cols=66 Identities=17% Similarity=0.329 Sum_probs=52.9
Q ss_pred HHHHHHHh-hcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHh
Q 002877 222 IMKVVCET-AKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWS 287 (872)
Q Consensus 222 ll~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~ 287 (872)
++.-+... ....+.++|...++|+..++...+..+..-.+.++..+.....+.++++...|++.+.
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 44444444 2456899999999999999999999998888899998888888888888888877553
No 258
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=47 Score=38.55 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=49.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 223 MKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
++.+......++..+|.+-++....+...+...+...-..+.+.++....+++++++..+.+.+..+.+.
T Consensus 280 ~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq 349 (1014)
T KOG4524|consen 280 LKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQ 349 (1014)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Confidence 3344444466788888888888777777766555555555666667777788899998888877766654
No 259
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=89.52 E-value=29 Score=36.06 Aligned_cols=357 Identities=10% Similarity=0.099 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHH
Q 002877 35 LPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQ 114 (872)
Q Consensus 35 ~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~ 114 (872)
-+.+...++.++.... .++....+..++--.+..+ ..+...+.. -....++..-...+..|.+.+..+-++.+.
T Consensus 63 ~~~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d-~sr~~lf~~----~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~ 136 (442)
T KOG2759|consen 63 NAQYVKTFINLLSHID-KDDTVQYVLTLIDDMLSED-RSRVDLFHD----YAHKLKRTEWLSFLNLLNRQDTFIVEMSFR 136 (442)
T ss_pred cHHHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhC-chHHHHHHH----HHHhhhccchHHHHHHHhcCChHHHHHHHH
Confidence 3466777777776543 3444444566665555422 111111111 111122222335667888889999999999
Q ss_pred HHHHHHHhhc---CCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccC-cc-ccchhhHHHHHHHHHhcccCCC
Q 002877 115 VIAKIASIEI---PQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEIS-HQ-DLVQDEVNAVLTAVVQGMNLAE 189 (872)
Q Consensus 115 ~l~~i~~~~~---p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~-~l~~~~~~~l~~~l~~~l~~~~ 189 (872)
+++.++...- +.+...-....+...+++.. +..-+..+..||+.+...-. .. .....-...+++.+. ++.
T Consensus 137 Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~-~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~----s~~ 211 (442)
T KOG2759|consen 137 ILSKLACFGNCKMELSELDVYKGFLKEQLQSST-NNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA----STK 211 (442)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh----ccC
Confidence 9999886531 11133335555666665521 56677888888887765421 01 110111223333333 222
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhhh-h-HHhHHHH---
Q 002877 190 HSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYEV-L-EPYMQTL--- 263 (872)
Q Consensus 190 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~-~-~~~l~~l--- 263 (872)
.+.+++...+-|+--+. +.+++.....+--+++.+..+++ +..+++-+.++..+..++...++. . +.+...+
T Consensus 212 ~~~QlQYqsifciWlLt--Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~ 289 (442)
T KOG2759|consen 212 CGFQLQYQSIFCIWLLT--FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC 289 (442)
T ss_pred cchhHHHHHHHHHHHhh--cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc
Confidence 45566666666653321 11212111100114555555553 223455555555555555544311 1 1111111
Q ss_pred -HHHHHHHhcC---CChHHHHHHHHhHhHHhHhhhh-hhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcc
Q 002877 264 -FELTSNAVKG---DEEAVALQAVEFWSSICDEEIE-LQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQD 338 (872)
Q Consensus 264 -~~~~~~~~~~---~~~~~~~~al~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 338 (872)
+.-.+..+.. .|+++. ..++++..-...... +. -...|..++..-.+.
T Consensus 290 ~v~k~l~~L~~rkysDEDL~-~di~~L~e~L~~svq~Ls----------------SFDeY~sEl~sG~L~---------- 342 (442)
T KOG2759|consen 290 KVLKTLQSLEERKYSDEDLV-DDIEFLTEKLKNSVQDLS----------------SFDEYKSELRSGRLE---------- 342 (442)
T ss_pred CchHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHhhc----------------cHHHHHHHHHhCCcC----------
Confidence 1111222221 233333 455555554443210 00 012222222222111
Q ss_pred cCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhcc-CCCcchHHHHHHHHHHhhcCCCccchhHhHH--hHHHHH
Q 002877 339 QDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIV-KSDWRCREAATYAFGSVLEGPTIDKLAPLVH--AGFDFL 415 (872)
Q Consensus 339 ~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~l 415 (872)
|++-.....+-..=+..+.+.-.. ++..+...+. +.++..-..|+.=+|...... |.... .+. ..-..+
T Consensus 343 -----WSP~Hk~e~FW~eNa~rlnennye-llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y-P~gk~-vv~k~ggKe~v 414 (442)
T KOG2759|consen 343 -----WSPVHKSEKFWRENADRLNENNYE-LLKILIKLLETSNDPIILCVACHDIGEYVRHY-PEGKA-VVEKYGGKERV 414 (442)
T ss_pred -----CCccccccchHHHhHHHHhhccHH-HHHHHHHHHhcCCCCceeehhhhhHHHHHHhC-chHhH-HHHHhchHHHH
Confidence 333332223333333333222111 2222223332 334555566777777777654 23211 122 334568
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHh
Q 002877 416 LNAMRDENNHVKDTTAWTLSRIFE 439 (872)
Q Consensus 416 ~~~l~d~~~~vr~~a~~~l~~l~~ 439 (872)
+..+.+++|.||..|+.++.++..
T Consensus 415 M~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 415 MNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHh
Confidence 888999999999999999887653
No 260
>PF05536 Neurochondrin: Neurochondrin
Probab=89.08 E-value=43 Score=37.46 Aligned_cols=187 Identities=18% Similarity=0.103 Sum_probs=113.5
Q ss_pred ChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHH
Q 002877 275 EEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCL 354 (872)
Q Consensus 275 ~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l 354 (872)
...++.-|+..+.+++..+. .. ..+-+-.-+|.++..+....+ ...-.-+.+||
T Consensus 70 ~~~~~~LavsvL~~f~~~~~-~a-----------------~~~~~~~~IP~Lle~l~~~s~--------~~~v~dalqcL 123 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCRDPE-LA-----------------SSPQMVSRIPLLLEILSSSSD--------LETVDDALQCL 123 (543)
T ss_pred HHHHHHHHHHHHHHHcCChh-hh-----------------cCHHHHHHHHHHHHHHHcCCc--------hhHHHHHHHHH
Confidence 35677788888888887322 10 112233577888888875432 13445567777
Q ss_pred HHHHhhc-C-Ccch-hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccc---hhHhHHhHHHHHHHhcCCCcHHHHH
Q 002877 355 GLVARTV-G-DEVV-PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDK---LAPLVHAGFDFLLNAMRDENNHVKD 428 (872)
Q Consensus 355 ~~l~~~~-~-~~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~---~~~~l~~l~~~l~~~l~d~~~~vr~ 428 (872)
..++..- | +.+. ...++.+.+.+.+ +....+.++..+..+......+. -...+..+++.+-..+...+...+-
T Consensus 124 ~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kf 202 (543)
T PF05536_consen 124 LAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKF 202 (543)
T ss_pred HHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHH
Confidence 7777432 2 1111 1234444444433 45567888877777665543222 2234557777777777777777788
Q ss_pred HHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhc
Q 002877 429 TTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYE 489 (872)
Q Consensus 429 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (872)
..+..++.+....+.... ...........+...+...+++ .+.-|..+......+.+.++
T Consensus 203 ell~~L~~~L~~~~~~~~-~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 203 ELLEFLSAFLPRSPILPL-ESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHhcCcCCcccc-ccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 888888888776631000 0113344556677777777776 67788888888888888764
No 261
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=88.84 E-value=6.4 Score=35.18 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHH-HHHHH
Q 002877 455 NLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAY-ETLNE 533 (872)
Q Consensus 455 ~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~-~al~~ 533 (872)
-.+.+.+.++..-. +-..+|...+..+..... ++.+.|++.++++.+.+.+..+...+......|+ .++..
T Consensus 43 ~W~eL~d~Ils~~~---~e~~kA~~IF~~L~~~l~-----~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~ 114 (174)
T PF04510_consen 43 GWDELSDCILSLSE---NEPVKAFHIFICLPMPLY-----GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCM 114 (174)
T ss_pred CchhHHHHHHHhhc---cchHHHHHHHHhCCchhh-----hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHH
Confidence 34455555444332 222567777777763333 7888999999999999999855421221122333 33343
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHHHHh
Q 002877 534 VVRCSNITETSQIIAELLPAIMGRLGQTLE 563 (872)
Q Consensus 534 l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 563 (872)
.+.......-.+.+..+++..++.+.+.++
T Consensus 115 ~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~ 144 (174)
T PF04510_consen 115 AIQLLESSMRVDLVKELLPKMVKSVKELVE 144 (174)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 444433112257788888888877777654
No 262
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.77 E-value=67 Score=39.33 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCC-ChhHHHHHHHHHhhcccCCcc
Q 002877 36 PGFLLSLSVELVNNEK-PTESRRLAGIMLKNSLDAKDA 72 (872)
Q Consensus 36 ~~~~~~l~~il~~~~~-~~~vr~~a~~~l~~~i~~~~~ 72 (872)
.+.+..|++++..++. +.+.|.-|...|.|+|....+
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD 271 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD 271 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 5677888888876544 678899999999998876543
No 263
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.69 E-value=13 Score=32.69 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHh---HHHHHHHHHHHHHH
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQ---VCAITVGVVGDVCR 680 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~---v~~~a~~~l~~l~~ 680 (872)
.....+..+...+.+.++.+...|+.++..++.++|..|...+ ..++..|...+.+..... |+..++..+.....
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999999999999998776543 356666666555443333 89999999999988
Q ss_pred Hhc
Q 002877 681 ALD 683 (872)
Q Consensus 681 ~~~ 683 (872)
.++
T Consensus 119 ~f~ 121 (140)
T PF00790_consen 119 AFK 121 (140)
T ss_dssp HTT
T ss_pred HHC
Confidence 884
No 264
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=1.7 Score=39.77 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=66.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHh---cCCc
Q 002877 610 IMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL---DDKV 686 (872)
Q Consensus 610 l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~---~~~~ 686 (872)
+++.+..-|...+...+--|-.-+..+..+.++.+.|.+++++..|...+... +.++...++.+|..++... |..+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhccccchhh
Confidence 34444445555555555566666777777788999999999999999999865 4568888888888887664 5889
Q ss_pred cccHHHHHHHHHH
Q 002877 687 LPFCDGIMSLLLN 699 (872)
Q Consensus 687 ~~~~~~i~~~l~~ 699 (872)
.||..++++.+-.
T Consensus 194 VPfYRQlLp~~n~ 206 (262)
T KOG3961|consen 194 VPFYRQLLPVLNT 206 (262)
T ss_pred hhHHHHhhhhhhh
Confidence 9999999886643
No 265
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.19 E-value=14 Score=32.46 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
...+..+..-+.+.++.+.-.|+.++..+++++|..|...+ ..++..|...+....++.|+..++.++...+..++.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 46778888888888999999999999999999998765433 356666666665555677999999999999888764
No 266
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=87.05 E-value=1.3 Score=35.48 Aligned_cols=54 Identities=9% Similarity=0.179 Sum_probs=44.6
Q ss_pred CcchhhhHHHHHHHHHhhcCC---cchhchHHHHHhhccCC--CcchHHHHHHHHHHhh
Q 002877 343 IWNISMAGGTCLGLVARTVGD---EVVPLVMPFVEANIVKS--DWRCREAATYAFGSVL 396 (872)
Q Consensus 343 ~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~i~ 396 (872)
.|.+|..|++.+..++..++. .+.+.+...+.+.+.|+ .+..+++|+.+|..+.
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 399999999999999999873 45677777777777765 4778999999999984
No 267
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.59 E-value=28 Score=32.53 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=57.7
Q ss_pred HHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhcc
Q 002877 93 VKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEI 164 (872)
Q Consensus 93 i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 164 (872)
..+.+++...+++..+|..+.++++.+.+..+- +=...+|.++.+..|+ ++.+|..|...+..+.+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~--~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSP--NPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCC--ChHHHHHHHHHHHHHHHHh
Confidence 334667777789999999999999999987653 3346899999999999 9999999999999999887
No 268
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=86.15 E-value=48 Score=34.88 Aligned_cols=120 Identities=12% Similarity=0.180 Sum_probs=82.4
Q ss_pred CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCc-cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 002877 128 QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISH-QDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNAL 206 (872)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 206 (872)
.|..+.+.+...+-++ +..+|.++..++.+++..... +.+...+.+.++ ...+..+.....=|..|+|.+..++
T Consensus 22 ~~~~~~~~i~~~lL~~--~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~i---i~SL~~~~~~~~ER~QALkliR~~l 96 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSD--SKEVRAAGYRILRYLISDEESLQILLKLHIDIFI---IRSLDRDNKNDVEREQALKLIRAFL 96 (371)
T ss_pred hHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhh---HhhhcccCCChHHHHHHHHHHHHHH
Confidence 7888888888766666 688999999999988876420 011011222222 2333332234566889999999988
Q ss_pred HHHH--hhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhH
Q 002877 207 DFAL--TNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLE 257 (872)
Q Consensus 207 ~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (872)
..-+ ..+. .-++..+.....++++..|..+++.+.+++-..|+.+.
T Consensus 97 ~~~~~~~~~~-----~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~ 144 (371)
T PF14664_consen 97 EIKKGPKEIP-----RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA 144 (371)
T ss_pred HhcCCcccCC-----HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH
Confidence 7622 1121 23778888888888999999999999999988887653
No 269
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=85.97 E-value=9.8 Score=34.85 Aligned_cols=100 Identities=9% Similarity=0.116 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHH------hhh----HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHH
Q 002877 623 STVHEEAMLAIGALAYATGPEFA------KYM----PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDG 692 (872)
Q Consensus 623 ~~v~~~a~~~l~~l~~~~~~~~~------~~l----~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 692 (872)
...+.-++..+..+....|..|. .+. ..+.+.+.+.+.+.+ +.+-..++..+..+....+..+...++.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776665 222 356777777776644 7788889999999998888777777788
Q ss_pred HHHHHHH-HhcCCCCCCCCchhHHHHHHHHHH
Q 002877 693 IMSLLLN-ALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 693 i~~~l~~-~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
+++.++. .+.++......|..++.++..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 8887776 555443233577788899998886
No 270
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=85.70 E-value=39 Score=33.42 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccC--CCCCCCchhhHHHHHHHHHHhhccCCC--cchhHHHHHHH
Q 002877 454 ENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDA--GPSSSLLSPYLTSIIAELLRAADRTDV--GGSKLRSAAYE 529 (872)
Q Consensus 454 ~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~il~~l~~~l~~~~~--~~~~vr~~a~~ 529 (872)
..++.+-+.+++++.. +..-+.+...+..+...-... +.....+.-.+-..+|.++..+...+. .+.. .....+
T Consensus 60 ~~f~Glq~Ll~KGL~S-s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~-~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRS-SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQE-CIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCC-CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHH-HHHHHH
Confidence 3566777777888874 333456677777777653311 221123333455677778777764330 0122 446667
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHH
Q 002877 530 TLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQ 609 (872)
Q Consensus 530 al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 609 (872)
.|..+++..+..+... ++... . .+.+. ...+.... ++..+...+ +..+.-+
T Consensus 138 ~La~~a~~~~~~~La~----il~~y----a----~~~fr-----~~~dfl~~---v~~~l~~~f---------~P~~~~~ 188 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLAR----ILSSY----A----KGRFR-----DKDDFLSQ---VVSYLREAF---------FPDHEFQ 188 (262)
T ss_pred HHHHHHHhCCCccHHH----HHHHH----H----hcCCC-----CHHHHHHH---HHHHHHHHh---------CchhHHH
Confidence 8888887655122111 11111 1 01111 01111122 222222222 2235568
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 610 IMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 610 l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
++..++.++.+....+|..++..+..+.....-. .|+.++++..+.+.++.. ....|+..+..+....|.
T Consensus 189 ~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~----~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 189 ILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD----LWMEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc----cHHHHHHHHHHHHhhccc
Confidence 8888999999988899999999999987765433 346677888888888753 456677777777665553
No 271
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=85.29 E-value=1.7 Score=34.31 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhcc
Q 002877 383 RCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 383 ~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
..|++++++|++++... |..+.+++++++..|.....| ...++.++-.+++.+-+.-.
T Consensus 4 ~~rH~~VLGL~Alv~a~-Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAF-PYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT--S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 46899999999999988 588888999999998888886 55688888889888865444
No 272
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.10 E-value=74 Score=36.10 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=102.6
Q ss_pred CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 002877 128 QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 207 (872)
.-.+-++.|++.+.+.+ -..-|+.|...|..+.+.+. ......-++.+++.|..+-.++++-..++.++..++.
T Consensus 19 s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkYR-----~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKYR-----EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred cHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHH-----HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 34567788888776652 34568888889988887763 2222333444555565544567888889998887764
Q ss_pred HHH------hh-----hhhhh---H--HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHH---HHHHHH
Q 002877 208 FAL------TN-----FQNEM---E--RNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQT---LFELTS 268 (872)
Q Consensus 208 ~~~------~~-----~~~~~---~--~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~---l~~~~~ 268 (872)
.-. +. +..|- + .+..+..+...+...|..+|..+++.+..+++..|..+..-+-. =+.-++
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 321 10 00000 0 01145556666777789999999999999999887665543321 123344
Q ss_pred HHhcCCChHHHHHHHHhHhHHhHhh
Q 002877 269 NAVKGDEEAVALQAVEFWSSICDEE 293 (872)
Q Consensus 269 ~~~~~~~~~~~~~al~~l~~l~~~~ 293 (872)
..+.|..+-+|-.++-++..+++..
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccC
Confidence 4556667778999999999988753
No 273
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=85.04 E-value=56 Score=34.60 Aligned_cols=275 Identities=12% Similarity=0.131 Sum_probs=133.7
Q ss_pred cchhhhHHHHHHHHHhh------cCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhc-CCCccchhHhHHhHHHHHH
Q 002877 344 WNISMAGGTCLGLVART------VGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLE-GPTIDKLAPLVHAGFDFLL 416 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~------~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~-~~~~~~~~~~l~~l~~~l~ 416 (872)
..+...|.++++.+... ++++....++......+.+++- .+..+...+..++. .+.++.+.......+-..+
T Consensus 60 ~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~-~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 60 SRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS-PKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred hHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 34556666676666533 2333333444554555544431 12222233333332 2222333333332222233
Q ss_pred HhcCC--CcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCC
Q 002877 417 NAMRD--ENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGP 493 (872)
Q Consensus 417 ~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~ 493 (872)
..+.+ +...+-...+.++.++....+. ........=++.++..+-+ .+.+|.+|......+...++
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~q~p~-------~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~---- 207 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLSQFPQ-------QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLG---- 207 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhC----
Confidence 33332 4455666777777777766664 3334445556666666666 77888877665555544441
Q ss_pred CCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhh
Q 002877 494 SSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDRE 573 (872)
Q Consensus 494 ~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 573 (872)
+ -..+...+...++....+. .+.....+-+..++..-+ . .
T Consensus 208 ------~-~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~-~--~----------------------------- 247 (372)
T PF12231_consen 208 ------P-NKELSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSKD-E--Y----------------------------- 247 (372)
T ss_pred ------h-hHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHhCcC-C--c-----------------------------
Confidence 0 0111222222222111111 223333333333333211 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhH---HHhhhHH
Q 002877 574 KQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPE---FAKYMPE 650 (872)
Q Consensus 574 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~---~~~~l~~ 650 (872)
..+......++.-++... -.--+++.+.+.....+++++++.+|..|+.++..++...... ..+.+.-
T Consensus 248 ------~~a~~iW~~~i~LL~~~~---~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l 318 (372)
T PF12231_consen 248 ------KLAMQIWSVVILLLGSSR---LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL 318 (372)
T ss_pred ------chHHHHHHHHHHHhCCch---hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 122333333333333310 0233567888898889999999999999999999998854421 1223333
Q ss_pred HHHHHHhhhcccchH----hHHHHHHHHHHHHH
Q 002877 651 FYQYLQMGLQNSEEY----QVCAITVGVVGDVC 679 (872)
Q Consensus 651 i~~~l~~~l~~~~~~----~v~~~a~~~l~~l~ 679 (872)
+...+...++..... +++..++..++.+.
T Consensus 319 L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 319 LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 444444444443332 45666666665554
No 274
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.68 E-value=65 Score=35.08 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Q 002877 172 DEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQN-EMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAS 250 (872)
Q Consensus 172 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (872)
.....++..++..=+.+ .+-...++.+..++.|...+... .....-++..+...+.+++..+|..+++++..+..
T Consensus 45 ~~flr~vn~IL~~Kk~~----si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 45 EEFLRVVNTILACKKNP----SIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred HHHHHHHHHhhccccCC----CcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 33444555555444432 22234555555655543322221 11223356667777889999999999999998877
Q ss_pred hhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 251 TYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 251 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
.-.+.=......+..-+...+-|.++-+|.+|..+++.+-+.
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 544322222334555555566677888999999877766543
No 275
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=84.67 E-value=9.4 Score=33.95 Aligned_cols=69 Identities=10% Similarity=0.255 Sum_probs=44.3
Q ss_pred HHhhhHHHHHHHHhhhcccch---HhHHHHHHHHHHHHHHHhcCC-ccccHHHHHHHHHHHhcCCCCCCCCchhHHHHH
Q 002877 644 FAKYMPEFYQYLQMGLQNSEE---YQVCAITVGVVGDVCRALDDK-VLPFCDGIMSLLLNALSNSQLNRSVKPPILSCF 718 (872)
Q Consensus 644 ~~~~l~~i~~~l~~~l~~~~~---~~v~~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l 718 (872)
+....+.+++.+.+.+....+ .++...++.+++......+.. +.. ..+++.+++.|. +++++..|+.|+
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~----~~~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQ----SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTT----SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcC----CHHHHHHHHHhC
Confidence 344556677777777765443 667888888888877654411 111 247888888885 445578887775
No 276
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=84.43 E-value=53 Score=33.81 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=46.2
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 413 DFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 413 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
..++...+. ...-++-|...++++.+++++ .....+++-+.+..| +..||..|..-+-.+|++
T Consensus 28 ~~il~~~k~-~~k~k~lasq~ip~~fk~fp~-----------la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 28 EGILKAVKG-TSKEKRLASQFIPRFFKHFPS-----------LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHhhc-chHHHHHHHHHHHHHHhhCch-----------hhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 334444433 344566788899999998886 445677777777887 899999999999988853
No 277
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.30 E-value=20 Score=31.19 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhH--HHHHHHHhhhcc--cchHhHHHHHHHHHHHHHHHhc
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMP--EFYQYLQMGLQN--SEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~--~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
...+..+...+.+.++.++..|+.++..++.++|..|...+. .++..+.+.+.. ..+.+|+..++.++......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 467788888888889999999999999999999987754332 344445555544 3456799999999999998886
Q ss_pred C
Q 002877 684 D 684 (872)
Q Consensus 684 ~ 684 (872)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 278
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=84.26 E-value=12 Score=30.72 Aligned_cols=61 Identities=11% Similarity=0.027 Sum_probs=52.4
Q ss_pred hchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhH-HHhhhHHHHHHHHhhhccc
Q 002877 602 FILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPE-FAKYMPEFYQYLQMGLQNS 662 (872)
Q Consensus 602 ~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~~~ 662 (872)
.+.||++.++-.+...+.+-.++||..++..+.-+.+.++.. +..+...+++.....+...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 788899999999999999999999999999999999999987 6677777888777766543
No 279
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.13 E-value=28 Score=30.33 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHh-HHHHHHHHHHHHHHHhc
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQ-VCAITVGVVGDVCRALD 683 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~-v~~~a~~~l~~l~~~~~ 683 (872)
...+..+..-+.+.++.+...|+.++..++.++|..|...+ ..++..|...+....... |+..++.++...+..++
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 46788888889999999999999999999999998775544 256677776666554433 99999999999988875
No 280
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.98 E-value=1.2e+02 Score=37.59 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccc
Q 002877 650 EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD-DKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVH 728 (872)
Q Consensus 650 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 728 (872)
.++..+.....+.....+|.+++..+...+-... .......++|-..+...+.+. +-++|+.+..+++-+.......
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~--~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD--QIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHhccccc
Confidence 4444444334455677899999988877665432 134566678888888888877 5679999999998887654433
Q ss_pred hhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCC
Q 002877 729 FEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRD 808 (872)
Q Consensus 729 ~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 808 (872)
+.+ ..........+..- ........++..+.+++.++-- .+.-+++..+..+....+ ..
T Consensus 1604 ~~~---~k~d~~~~~~~s~s-----------~~~i~~HgavlgLgA~VlafPy----~vP~wip~~L~~Ls~fa~---e~ 1662 (1710)
T KOG1851|consen 1604 FVS---DKRDTTSNILQSKS-----------KDEIKAHGAVLGLGAIVLAFPY----VVPLWIPKPLMNLSSFAR---ES 1662 (1710)
T ss_pred cch---Hhhhhhhhhhhhcc-----------hHHHHhhhhHHHHHHHHHhccc----cchhhhHHHHHHHHhhcC---Cc
Confidence 333 11111111111100 0012223333334444433221 122234444444444323 34
Q ss_pred HhHHHHHHHHHHHHHhhhCc
Q 002877 809 ENVTKAAVAVMGDLADALGP 828 (872)
Q Consensus 809 ~~~~~~a~~~l~~l~~~~~~ 828 (872)
..+++++-.++.++-.....
T Consensus 1663 ~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1663 AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 67777888888877665554
No 281
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.55 E-value=6.3 Score=33.01 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=48.7
Q ss_pred chHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhH--HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 002877 129 WPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEV--NAVLTAVVQGMNLAEHSAEVRLAATRALYNAL 206 (872)
Q Consensus 129 ~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~--~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 206 (872)
--+++..|.+.+..+. ++.....|+.-++.+++.. |.. ...+ -..-..++..+++ ++++||..|+.|+..++
T Consensus 41 ~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~-p~g--r~ii~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHY-PNG--RNIIEKLGAKERVMELMNH--EDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH--GGG--HHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHC-hhH--HHHHHhcChHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 3457888888884431 5666777888888888887 332 1222 2234566778887 78999999999999875
Q ss_pred H
Q 002877 207 D 207 (872)
Q Consensus 207 ~ 207 (872)
.
T Consensus 115 ~ 115 (119)
T PF11698_consen 115 V 115 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 282
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=83.44 E-value=48 Score=38.10 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhH-HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 605 QTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMP-EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 605 ~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
|+-..++..+-..+.. ...|-.++.+|+.++..-+..+..... .+++.|+++|....+.-+...|+.+|..+.-.++
T Consensus 66 P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred ccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 5666788888888875 467888999999998877665555444 6778888888776666688889999999888888
Q ss_pred CCccccHHHHHHHHHHHhcCCCC----CC-----CCchhHHHHHHHHHHhhccchhhhHH
Q 002877 684 DKVLPFCDGIMSLLLNALSNSQL----NR-----SVKPPILSCFGDIALAIGVHFEKYVP 734 (872)
Q Consensus 684 ~~~~~~~~~i~~~l~~~l~~~~~----~~-----~~~~~~~~~l~~l~~~~~~~~~~~l~ 734 (872)
..+.+|++.++....+++.-..- .. .........|..|-..++-.|..|+.
T Consensus 144 ~~l~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr 203 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLYPCNFLSFLR 203 (668)
T ss_pred chhhHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHHHHhcccchHHHHHH
Confidence 88999999999999888753210 01 11222233344444445666666665
No 283
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.05 E-value=60 Score=39.39 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=70.9
Q ss_pred CCCCchhHHHHHHHHHHhhccchhh--h----HHHHHHHHHHHHHhccccCC-CchHHHHHHHHHHHHHHHHHHhHhhcc
Q 002877 707 NRSVKPPILSCFGDIALAIGVHFEK--Y----VPHALQMMQEAAKACAQLDM-EDEELIDYGNQLRSSIFEAYSGILQGF 779 (872)
Q Consensus 707 ~~~~~~~~~~~l~~l~~~~~~~~~~--~----l~~i~~~l~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~l 779 (872)
..+||..|...+=+|....|..+.+ + ..-++|.|-.+ .. ...++ ..+++ .+.-.++.+-.+.|+.+-.
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~-~~-q~~~ewngkei---qkqwtet~~ltisgIaklf 1084 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQ-PI-QNVSEWNGKEI---QKQWTETSCLTISGIAKLF 1084 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccc-cc-cchhhhcchhH---hhhhhhhhhhhHHHHHHHH
Confidence 6789999999999998888877665 2 23333433321 10 00111 11121 1223455666777777766
Q ss_pred chhh-----hhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhC
Q 002877 780 KSAR-----AEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALG 827 (872)
Q Consensus 780 ~~~~-----~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 827 (872)
.+.. -..+....+.+++++++..++ .+.++..+++.++..+....-
T Consensus 1085 ~e~fk~llnln~f~~vwe~ll~flkrl~s~--~s~e~slsai~~~qell~sii 1135 (1610)
T KOG1848|consen 1085 SENFKLLLNLNGFLDVWEELLQFLKRLHSD--ISPEISLSAIKALQELLFSII 1135 (1610)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhc--CChHhHHHHHHHHHHHHHHHh
Confidence 5541 123556668889999988776 678999999999988765443
No 284
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=81.68 E-value=2.2 Score=27.72 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=25.6
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIF 438 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 438 (872)
..++.+++.+.++++.++..++++|.+++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46788888888889999999999999875
No 285
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=81.34 E-value=1.1e+02 Score=35.28 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=69.7
Q ss_pred CChhHhhHHHHHHHHHHHhhcCC------------CCchHHHHHHHHhhc----cCCccHHHHHHHHHHHHHhhhccCcc
Q 002877 104 PVPEARHTSAQVIAKIASIEIPQ------------KQWPELIRSLLNNMT----QQDSLAALKQATLETLGYVCEEISHQ 167 (872)
Q Consensus 104 ~~~~vr~~~~~~l~~i~~~~~p~------------~~~~~ll~~l~~~l~----~~~~~~~~r~~al~~l~~l~~~~~~~ 167 (872)
.++.++..+...++.++...... ..-.++++.+.+.+. .. +...+..++.+|+.+--
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~LkaLgN~g~----- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG--DEEEKIVYLKALGNLGH----- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT---HHHHHHHHHHHHHHT------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHhhccCC-----
Confidence 45789999999999988764332 112334444444443 33 55677788888876532
Q ss_pred ccchhhHHHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 002877 168 DLVQDEVNAVLTAVVQGMNLA-EHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLV 246 (872)
Q Consensus 168 ~l~~~~~~~l~~~l~~~l~~~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~ 246 (872)
+..++.+...+.+. ..+..+|.+|+.+|..+...... ..++.+++++.+. ..+.++|.+|+..+.
T Consensus 520 -------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-----~v~~~l~~I~~n~--~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 520 -------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-----KVREILLPIFMNT--TEDPEVRIAAYLILM 585 (618)
T ss_dssp -------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-----HHHHHHHHHHH-T--TS-HHHHHHHHHHHH
T ss_pred -------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHhcCC--CCChhHHHHHHHHHH
Confidence 22444555555553 35789999999999865332211 1123344444333 347889999987665
Q ss_pred H
Q 002877 247 S 247 (872)
Q Consensus 247 ~ 247 (872)
.
T Consensus 586 ~ 586 (618)
T PF01347_consen 586 R 586 (618)
T ss_dssp H
T ss_pred h
Confidence 4
No 286
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.54 E-value=18 Score=30.40 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=50.3
Q ss_pred HHHHHHHhh-cCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHH--HHHHHHHHhcCCChHHHHHHHHhHhHHhH
Q 002877 222 IMKVVCETA-KSKEVEIRQAAFECLVSIASTYYEVLEPYMQT--LFELTSNAVKGDEEAVALQAVEFWSSICD 291 (872)
Q Consensus 222 ll~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~--l~~~~~~~~~~~~~~~~~~al~~l~~l~~ 291 (872)
++..+.+++ .+.++.+...||.=++.++..+|.- ...++. .-..+...+.+++++++..|+..+..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 777888887 4557888888999999999988763 333433 34566777889999999999987766654
No 287
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=80.41 E-value=8.9 Score=30.71 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHH
Q 002877 420 RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYYLA 485 (872)
Q Consensus 420 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~ 485 (872)
.++++.+|+.|+..++.++..+.. .....-+.+...+.+.+.| .......|...|..+-
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~-------~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSS-------SYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999988876 3445667888888888886 4556778887777764
No 288
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=80.32 E-value=79 Score=33.00 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc-
Q 002877 606 TADQIMVLFLRVFACR-SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD- 683 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~- 683 (872)
....+++.+..++... +.......+.+++.-....+ ...-+.++..+.+++.+...+ +|...+.+++......+
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~---~~~~~~~~~~~~kGl~~kk~~-vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS---SELPKKVVDAFKKGLKDKKPP-VRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC---cCCCHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHhhccC
Confidence 4567888888888764 33333333333333222221 233467888899999887655 99999999998876111
Q ss_pred CCccccHHHHHHHHHHHh
Q 002877 684 DKVLPFCDGIMSLLLNAL 701 (872)
Q Consensus 684 ~~~~~~~~~i~~~l~~~l 701 (872)
....++...+++.+.+.+
T Consensus 95 ~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 223344455555555554
No 289
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.05 E-value=36 Score=30.07 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=57.2
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHhhh
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKS-KEVEIRQAAFECLVSIASTYY 253 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~ 253 (872)
...+..+...+.+ .++.+...|+..|-.++..++..|..+.....+++.+..++.. .+..++..+++++..+...+.
T Consensus 36 k~a~ral~KRl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 36 KDCLKAIMKRLNH--KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 4455566666776 6789999999999999987777665544334466767776665 688999999999999887664
No 290
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.53 E-value=14 Score=35.37 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred cchhhhH-HHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC
Q 002877 344 WNISMAG-GTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE 422 (872)
Q Consensus 344 ~~~r~~a-~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~ 422 (872)
|.+.... ..+++.+.... +...+.+.+...|++.-.|.+++.++...... ...+.++..+...+.|+
T Consensus 100 W~~~D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~ 167 (213)
T PF08713_consen 100 WATCDSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDE 167 (213)
T ss_dssp HHHHHHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS
T ss_pred chhhhHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCc
Confidence 8766554 44455544332 66778888888888755555555443222221 35667888888888999
Q ss_pred cHHHHHHHHHHHHHHHhhcc
Q 002877 423 NNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~ 442 (872)
+..||.+..|+|..++...+
T Consensus 168 ~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 168 EYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp -HHHHHHHHHHHHHHCTT-H
T ss_pred hHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999886544
No 291
>PLN03205 ATR interacting protein; Provisional
Probab=78.73 E-value=84 Score=32.33 Aligned_cols=124 Identities=10% Similarity=0.176 Sum_probs=74.3
Q ss_pred HHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh-c-ChHHHHHHHHHHHHHH
Q 002877 408 VHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK-D-APNVAEKVCGAIYYLA 485 (872)
Q Consensus 408 l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d-~~~v~~~a~~al~~l~ 485 (872)
++.++..++....-.+..+...+++.+-.+.+++......|.......+..+++...+... . ...||..|...+.-++
T Consensus 321 lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 321 LKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 5677788888777777888888888888888877653322223344455566665444322 2 6788888888777776
Q ss_pred HhhccCCCCCCCchhhHH-HHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhc
Q 002877 486 QGYEDAGPSSSLLSPYLT-SIIAELLRAADRTDVGGSKLRSAAYETLNEVVRC 537 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~~~-~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~ 537 (872)
..... ...-..|.. .++..+.+.+++.. -..|+..++..+..+..+
T Consensus 401 mssna----~~eREkFG~~~VfESiaQLLkkEa--Gl~VqKealhLLfLLLNC 447 (652)
T PLN03205 401 MSTDA----YTARESFVSKEVFESISLLLRKEG--GLHVRKEAIHLFYLLLNC 447 (652)
T ss_pred hccch----hHHHHHhcchHHHHHHHHHHHHhc--cchhhHHHHHHHHHHHcC
Confidence 55310 111112222 56666666665322 245677777666655543
No 292
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=78.68 E-value=4.6 Score=30.46 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhh-hCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 002877 812 TKAAVAVMGDLADA-LGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMINR 868 (872)
Q Consensus 812 ~~~a~~~l~~l~~~-~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 868 (872)
.++++=++|.+... .|-..+ ...++++.+++-+..++...+|-+|-|++|.+++
T Consensus 4 lKaaLWaighIgss~~G~~lL---~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLL---DESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHH---hhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 34667777777554 343322 2356899999988899999999999999999985
No 293
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=78.59 E-value=68 Score=31.26 Aligned_cols=175 Identities=14% Similarity=0.173 Sum_probs=93.1
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCC
Q 002877 229 TAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSD 308 (872)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 308 (872)
..+..+++.....++.+..++.... .....+++.+.........+.+.-++..+..+-..+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-------------- 70 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-------------- 70 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc--------------
Confidence 4455677888888888888776441 2222333333333344444444455555555544321
Q ss_pred CCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhc-cCCCcchHHH
Q 002877 309 SPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANI-VKSDWRCREA 387 (872)
Q Consensus 309 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~a 387 (872)
..| +.+. +.+............+++..|....+.+.++..++...|+ ..+.+++.+...+ .+.+...+-.
T Consensus 71 ---r~f--~~L~---~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~al 141 (234)
T PF12530_consen 71 ---RHF--PFLQ---PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQAL 141 (234)
T ss_pred ---hHH--HHHH---HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHH
Confidence 111 2222 2222211111111111123477777777889999988887 5666777777777 5556666667
Q ss_pred HHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC-CCcHHHHHHHHHHHH
Q 002877 388 ATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR-DENNHVKDTTAWTLS 435 (872)
Q Consensus 388 al~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 435 (872)
++-++..+++..- - .+...+..+.+.++ +..|.|-...+..+.
T Consensus 142 ale~l~~Lc~~~v----v-d~~s~w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 142 ALEALAPLCEAEV----V-DFYSAWKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred HHHHHHHHHHHhh----c-cHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 7777777774321 1 13345555666553 445656555444433
No 294
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=78.22 E-value=1.2e+02 Score=33.93 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=82.8
Q ss_pred hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh-----cC------CCcHHHHHHHHHHHH
Q 002877 367 PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA-----MR------DENNHVKDTTAWTLS 435 (872)
Q Consensus 367 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~-----l~------d~~~~vr~~a~~~l~ 435 (872)
+.++.++.+.+++.+...|..++..++.++..........+++ ++....+. ++ +.++.+-..+...++
T Consensus 245 ~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a 323 (993)
T COG5234 245 EVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA 323 (993)
T ss_pred HHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHHHHHHHH
Confidence 3455666666777777888888888888877664222223332 44333332 22 345554444433333
Q ss_pred HHHhhccCCCCCccccCcccHHHH-HHHHHHHhh-------c--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHH
Q 002877 436 RIFELLHCPATGFSVISPENLQRI-LTVLLESIK-------D--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSI 505 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~-------d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i 505 (872)
+++.. .-++.+-+ .+.+.+++. . ...+|.+++..+..+.... ...+.+.++..
T Consensus 324 -la~~~----------~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~------S~s~~~~lqt~ 386 (993)
T COG5234 324 -LAGAG----------LIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCY------SKSAIEGLQTN 386 (993)
T ss_pred -Hhhcc----------ccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeecc------ccccchhHHHH
Confidence 33221 22333333 333334443 1 3468899999888888775 44444445444
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHhc
Q 002877 506 IAELLRAADRTDVGGSKLRSAAYETLNEVVRC 537 (872)
Q Consensus 506 l~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~ 537 (872)
+-.++-.-.-.| .+..+|..+..++.+++..
T Consensus 387 L~hll~~~alFD-pel~vRr~a~Aal~E~iGR 417 (993)
T COG5234 387 LIHLLLQTALFD-PELNVRRAATAALFEVIGR 417 (993)
T ss_pred HHHHHHhhhhcC-chhhhhhHHHHHHHHHhcc
Confidence 443332211123 3467799999999888876
No 295
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.78 E-value=1.6e+02 Score=36.82 Aligned_cols=257 Identities=12% Similarity=0.135 Sum_probs=134.4
Q ss_pred cCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh-hccCCCCCccccCc---
Q 002877 378 VKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFE-LLHCPATGFSVISP--- 453 (872)
Q Consensus 378 ~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~--- 453 (872)
.+.+..+|+..+.|.+.-.+ . =-+.++..+...-.|.+..+-..+...++.+.. ++.. ..+
T Consensus 1047 ~s~s~~Irelv~rC~~~nik----S----GWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~-------~~~~~~ 1111 (1514)
T KOG0929|consen 1047 RSSSAEIRELVVRCISSNIK----S----GWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFEN-------VFPQEM 1111 (1514)
T ss_pred ccCcchhHHHHHhhhhhhhh----h----hhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhh-------hchhhh
Confidence 34556778777777762111 1 112344444555567777777777777774433 2222 111
Q ss_pred ccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccC----CC------CCCCchhhHHHHHHHHHHhhccCCCcch
Q 002877 454 ENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDA----GP------SSSLLSPYLTSIIAELLRAADRTDVGGS 521 (872)
Q Consensus 454 ~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~----~~------~~~~l~~~~~~il~~l~~~l~~~~~~~~ 521 (872)
..+...+..+.....+ .+.....+...+...+..+... +. ..+.-..++-+++-.+-.....+ ..
T Consensus 1112 ~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~---~~ 1188 (1514)
T KOG0929|consen 1112 DSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDY---RL 1188 (1514)
T ss_pred HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhcc---HH
Confidence 2233333333333222 2333333333333333222110 00 01112234445555555555422 35
Q ss_pred hHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccch
Q 002877 522 KLRSAAYETLNEVVRCSNITETSQ-IIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATK 600 (872)
Q Consensus 522 ~vr~~a~~al~~l~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 600 (872)
.+|..+++.+..+....| +.+.+ +-+.++..++.++...-.....+ ...++.......++.++..+...+-+
T Consensus 1189 ~vr~~al~vlF~il~~~g-~~F~~~~We~v~~~~fpIF~~~~~~~~~~-~~~eW~~tT~~~Al~~~v~lf~~~~~----- 1261 (1514)
T KOG0929|consen 1189 EVRKRALEVLFDILKEHG-DDFSKEFWEDVFRILFPIFDNVKLDEDES-EKDEWLSTTCNHALQALVDLFTQFFK----- 1261 (1514)
T ss_pred HHHHHHHHHHHHHHHhhh-hhccHHHHHHHHHheeecccccCcccchh-hhhHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 679999999999999888 66543 33333334444443321110011 11122223334444455555444444
Q ss_pred hhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHh-hhHHHHHHHHhhhc
Q 002877 601 SFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAK-YMPEFYQYLQMGLQ 660 (872)
Q Consensus 601 ~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~ 660 (872)
.+...++.++..+..+...++..+-.....++..++...+..|.+ ..+.+...+.+...
T Consensus 1262 -~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1262 -QLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred -HHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHH
Confidence 455667888999999999988888888899999998888876654 44555555554443
No 296
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=77.73 E-value=27 Score=30.80 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=56.1
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHH
Q 002877 409 HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQ 486 (872)
Q Consensus 409 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~ 486 (872)
...+..|.+.+.+.+|.+...|+..+..+.+.++. .....-.-..+++.+.+.+.+ ++.|+..+...+..-..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-----~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-----HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-----HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 36777888888999999999999999999888764 111111123556666666654 88999999999988888
Q ss_pred hhc
Q 002877 487 GYE 489 (872)
Q Consensus 487 ~~~ 489 (872)
.+.
T Consensus 115 ~f~ 117 (142)
T cd03569 115 AFR 117 (142)
T ss_pred HhC
Confidence 873
No 297
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.71 E-value=68 Score=30.77 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=74.0
Q ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH-----
Q 002877 133 IRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD----- 207 (872)
Q Consensus 133 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~----- 207 (872)
.|++.....+.. .+-.|-.++.+++.+.+.-+.+++..-...+++|..++.+.. .+..-+..|..++..++.
T Consensus 126 YpfL~Tt~~~r~-fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~--GSelSKtvA~fIlqKIlldD~GL 202 (293)
T KOG3036|consen 126 YPFLNTTSKSRP-FEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMES--GSELSKTVATFILQKILLDDVGL 202 (293)
T ss_pred HHhhhccccCCc-hHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc--ccHHHHHHHHHHHHHHhhccccH
Confidence 344444443331 345799999999999998654443233456799999999988 566777778887777642
Q ss_pred -HHHhhhhhhhHHHH-HHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Q 002877 208 -FALTNFQNEMERNY-IMKVVCETAKSKEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 208 -~~~~~~~~~~~~~~-ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (872)
|+...++.-..... +-+.+.++.+.++...-+.+++|...+...
T Consensus 203 ~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 203 YYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 22222222111222 334556667778888888888888887653
No 298
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=77.00 E-value=42 Score=31.57 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=37.6
Q ss_pred HHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 389 TYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 389 l~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
+..++.+-+..+ ....+.+..++..+.+.-.+++...|..+-.++|...+.++.
T Consensus 21 l~v~s~lf~~lg-~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 21 LNVLSALFEKLG-ERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHHHHHHHHHHh-hhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 344444444443 334567777777777777777888899999999988877764
No 299
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=76.98 E-value=64 Score=30.10 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 002877 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFA 209 (872)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 209 (872)
.+++.+++.+.++ +..+|..|+.++..+.+.- --+=...+|.++-...| +++.+|..|.+.+..+.+..
T Consensus 8 ryl~~Il~~~~~~--~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts--~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSS--DDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETS--PNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCC--CChHHHHHHHHHHHHHHHHh
Confidence 4567788888888 8999999999998887741 12344577888877777 78999999999999876543
No 300
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.79 E-value=41 Score=29.26 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCch-hhHH-HHHHHHHHhhccCCCcchhHHHHHHHHH
Q 002877 455 NLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLS-PYLT-SIIAELLRAADRTDVGGSKLRSAAYETL 531 (872)
Q Consensus 455 ~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~~~-~il~~l~~~l~~~~~~~~~vr~~a~~al 531 (872)
.-...+..|.+.|.. ++.++..|...+..+.+++ +..+. .+.. ..+..+.+.+...+..+..|+..+++.+
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNc------g~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll 107 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNC------GKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELI 107 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC------ChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 446778888888888 9999999999999999998 44332 2222 4455566666532234566788888888
Q ss_pred HHHHhcCC
Q 002877 532 NEVVRCSN 539 (872)
Q Consensus 532 ~~l~~~~~ 539 (872)
.......+
T Consensus 108 ~~W~~~f~ 115 (133)
T cd03561 108 LAWSESFG 115 (133)
T ss_pred HHHHHHhc
Confidence 88877666
No 301
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=76.66 E-value=7.5 Score=31.90 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=48.9
Q ss_pred cchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh
Q 002877 402 DKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK 468 (872)
Q Consensus 402 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 468 (872)
+.+.++++.++.++..++.+-.+.||.-+...+.-+.++.+++ ....+..++++..+..+.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~------~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE------LCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH------hHhhhHHHHHHHHHHHHC
Confidence 5678899999999999999999999999999999999999861 134455666666655554
No 302
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.32 E-value=11 Score=29.70 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=49.8
Q ss_pred HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHH
Q 002877 650 EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFG 719 (872)
Q Consensus 650 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~ 719 (872)
.++..+...+.+..+.++|...+.|+..+....++.+..-++.++..+-....++ +.++-..++.++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~--~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN--DESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC--CccHHHHHHHHHh
Confidence 3444444444444567899999999999999998888888889988888877765 5556566665554
No 303
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=76.16 E-value=62 Score=29.53 Aligned_cols=101 Identities=12% Similarity=0.176 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh--------HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 002877 192 AEVRLAATRALYNALDFALTNFQNEM--------ERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTL 263 (872)
Q Consensus 192 ~~vr~~al~~l~~~~~~~~~~~~~~~--------~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 263 (872)
...|.-+++.+.++++..+..+.+.. .+..+.+.+.+...+++..+...+++++..+...+...++..++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888887765544444211 1233555666666556689999999999999999888888888887
Q ss_pred HHHHHH-HhcCCC--hHHHHHHHHhHhHHhHh
Q 002877 264 FELTSN-AVKGDE--EAVALQAVEFWSSICDE 292 (872)
Q Consensus 264 ~~~~~~-~~~~~~--~~~~~~al~~l~~l~~~ 292 (872)
+..++. .+.++. ..-+..+++++..+++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 776655 334332 35677888988888875
No 304
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.27 E-value=72 Score=36.76 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=90.6
Q ss_pred HHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHH
Q 002877 96 LLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVN 175 (872)
Q Consensus 96 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~ 175 (872)
.|+..|.+++-.+...+-..+......+ .=+-++..|++..-+.+ +. .++.+|.. +. .++-.
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~y~~~t~-s~----~~~~il~~----~~-----~P~~K 69 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSD----REPWLVNGLVDYYLSTN-SQ----RALEILVG----VQ-----EPHDK 69 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhcc----chHHHHHHHHHHHhhcC-cH----HHHHHHHh----cC-----CccHH
Confidence 4555555555444444444444444332 12234555555543330 11 23333321 11 44556
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhh
Q 002877 176 AVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYE 254 (872)
Q Consensus 176 ~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~ 254 (872)
.++..+-..+.. ..-|..++..|+.++..-...... .....++..++.+++ +.+..+...|+.+|..++...+.
T Consensus 70 ~~~~~l~~~~~~----~~~Rl~~L~Ll~~~v~~qp~~l~~-i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 70 HLFDKLNDYFVK----PSYRLQALTLLGHFVRSQPPWLYK-ILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHHcC----chhHHHHHHHHHHHHhcCCchHHH-HhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 667776677765 378899999999877531111111 011225666666664 77888889999999999999999
Q ss_pred hhHHhHHHHHHHHHHHh
Q 002877 255 VLEPYMQTLFELTSNAV 271 (872)
Q Consensus 255 ~~~~~l~~l~~~~~~~~ 271 (872)
.+.+|+..+|.......
T Consensus 145 ~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999988776554
No 305
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=75.21 E-value=4.6 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 002877 839 FCNDFMSECLRSDDEQLKETAGWTQGMIN 867 (872)
Q Consensus 839 ~v~~ll~~~~~~~~~~~~~~a~~~~~~~~ 867 (872)
.++.+++. +++++++++..|.|+++.++
T Consensus 13 ~i~~L~~l-l~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVEL-LKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHH-HcCCCHHHHHHHHHHHHHHc
Confidence 46677775 77889999999999999886
No 306
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.45 E-value=1e+02 Score=31.17 Aligned_cols=309 Identities=12% Similarity=0.130 Sum_probs=159.3
Q ss_pred CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 002877 128 QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 207 (872)
.++-++..+. .-.++ +.....-++..+..+...- |++++-.-+. .+...|.+...+.++-...+.++..-.
T Consensus 105 a~~~~it~~~-la~~~--~~~~l~ksL~al~~lt~~q-pdl~da~g~~----vvv~lL~~~~~~~dlt~~~~~~v~~Ac- 175 (461)
T KOG4199|consen 105 AHDALITLLE-LAESP--NESVLKKSLEAINSLTHKQ-PDLFDAEAMA----VVLKLLALKVESEEVTLLTLQWLQKAC- 175 (461)
T ss_pred CcchhhhHHH-HhhCC--chhHHHHHHHHHHHhhcCC-cchhccccHH----HHHHHHhcccchHHHHHHHHHHHHHHH-
Confidence 3444444333 45555 6666777888888777665 5655222222 233444444356788888888877643
Q ss_pred HHHhhhhhhhHHH-HHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhhhh-------HHhHHHH-----HHHHHHHhcC
Q 002877 208 FALTNFQNEMERN-YIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYEVL-------EPYMQTL-----FELTSNAVKG 273 (872)
Q Consensus 208 ~~~~~~~~~~~~~-~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~-------~~~l~~l-----~~~~~~~~~~ 273 (872)
+.++...+.+.+ -+++.+.+.+. ....++....+..+..+... +.+ -.|-..+ ...++..++-
T Consensus 176 -~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d--DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A 252 (461)
T KOG4199|consen 176 -IMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD--DDIRVVFGQAHGHARTIAKEGILTALTEALQA 252 (461)
T ss_pred -HHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC--CceeeecchhhHHHHHHHHhhhHHHHHHHHHc
Confidence 222222222111 14455554443 22334555666666555421 111 1222222 1122222222
Q ss_pred -CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHH-hhHHHHHHHHhcccCCcccCCCCcchhhhHH
Q 002877 274 -DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARS-SLVPMLLETLLKQEEDQDQDDSIWNISMAGG 351 (872)
Q Consensus 274 -~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~ 351 (872)
.++++......-+..++-.. .+.+...+ .=+..++.++.+.++ ...|..+-
T Consensus 253 ~~dp~~L~~l~~tl~~lAVr~-------------------E~C~~I~e~GGl~tl~~~i~d~n~--------~~~r~l~k 305 (461)
T KOG4199|consen 253 GIDPDSLVSLSTTLKALAVRD-------------------EICKSIAESGGLDTLLRCIDDSNE--------QGNRTLAK 305 (461)
T ss_pred cCCccHHHHHHHHHHHHHHHH-------------------HHHHHHHHccCHHHHHHHHhhhch--------hhHHHHHH
Confidence 23555544444455553321 11221111 123455666643221 24566777
Q ss_pred HHHHHHHhhcCCc-ch---------hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcC
Q 002877 352 TCLGLVARTVGDE-VV---------PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMR 420 (872)
Q Consensus 352 ~~l~~l~~~~~~~-~~---------~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~ 420 (872)
.|+..+....|.. +- +.++...... +.++.+-+.++.++..++-.. |+.-...+. ..-...++.|+
T Consensus 306 ~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 306 TCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH--SDDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAMK 382 (461)
T ss_pred HHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHHH
Confidence 7777777766633 22 2233333333 346777888888888777544 343333333 44455666664
Q ss_pred -C-CcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHH
Q 002877 421 -D-ENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLA 485 (872)
Q Consensus 421 -d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
. ....|++.+||++.++...-.+ .....+..=++.|+..-.. ++.++..+-.+|..+-
T Consensus 383 ahP~~a~vQrnac~~IRNiv~rs~~-------~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 383 AHPVAAQVQRNACNMIRNIVVRSAE-------NRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhhhh-------ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 2 3467999999999999876654 2334455555666655444 7777777777766553
No 307
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=74.34 E-value=6.5 Score=25.88 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=28.6
Q ss_pred HHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Q 002877 156 TLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRAL 202 (872)
Q Consensus 156 ~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l 202 (872)
+++.+.+.- +..+ ..+.+...+...+.| +++.||.+|++.+
T Consensus 2 ~l~~iv~~d-p~ll---~~~~v~~~i~~rl~D--~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKD-PTLL---DSSDVQSAIIRRLSD--SSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcC-cccc---chHHHHHHHHHHhcC--CChHHHHHHHHHC
Confidence 344555443 4444 344788888899999 7899999998763
No 308
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=74.20 E-value=1.6e+02 Score=34.03 Aligned_cols=244 Identities=11% Similarity=0.066 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Q 002877 172 DEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 172 ~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (872)
.....+.....+-+.. ....-...|+++...++..++..+. .+..-++..+..++.+.+++.+..++.++.+++..
T Consensus 52 KI~~yL~~R~~kdl~~--~r~~~v~Iamea~~kLL~~C~eq~n--~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i 127 (819)
T KOG1877|consen 52 KIGTYLEERCYKDLRR--ERFGSVKIAMEAYDKLLQACKEQIN--LFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANI 127 (819)
T ss_pred HHHHHHHHHHHHHHHh--ccCcchhhHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhh
Confidence 3344444445555544 2233344566676666666665441 22334778888888877889999999999999854
Q ss_pred hh---hh---hHHhHHHHHHHHHHHhcC--CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHH-hHHhh
Q 002877 252 YY---EV---LEPYMQTLFELTSNAVKG--DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEK-ARSSL 322 (872)
Q Consensus 252 ~~---~~---~~~~l~~l~~~~~~~~~~--~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l 322 (872)
.. .+ ...++..+.+++-.. .+ ..+.+|.+.+..+..+...... ...+ ..+.+. ..+.+
T Consensus 128 ~~d~~sy~~~yd~Fi~kf~~l~he~-~~~~~~~~lr~agl~gLsa~v~~tv~--d~l~----------~ti~e~~h~d~i 194 (819)
T KOG1877|consen 128 EEDGPSYHRNYDFFISKFSSLCHER-GDDDMKDCLRAAGLQGLSAVVWLTVS--DHLA----------ATIWEPQHMDKI 194 (819)
T ss_pred cccCchhhhhhHHHHHHHHHHhhcc-cchhhhhhccHhhhhhHHHHHHHHHh--hhhh----------hhhhhhhhhccc
Confidence 31 11 223344445544433 22 2345666666655555433200 0000 011111 24567
Q ss_pred HHHHHHHHhccc-----CCccc---------CCCCcchhhhHHHHHHHHHhhcC--CcchhchHHHHHhhccCCCcchH-
Q 002877 323 VPMLLETLLKQE-----EDQDQ---------DDSIWNISMAGGTCLGLVARTVG--DEVVPLVMPFVEANIVKSDWRCR- 385 (872)
Q Consensus 323 ~~~l~~~l~~~~-----~d~~~---------d~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~l~~~~~~~r- 385 (872)
+|.+...+...+ +.+.. .+..-.+...|..|+..+..... ..+-..+-|.+...-.+.-|..-
T Consensus 195 vpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p~vla~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n 274 (819)
T KOG1877|consen 195 VPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTSDPKVLAERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPN 274 (819)
T ss_pred hhhHHHhhcchhhcccccCcccccCccccccCCcccCcchhHHHHHHHhhccccccchHHHHHHHHHhccccceeecCCC
Confidence 777766665544 11100 01111245566778887776643 23333333444333333446554
Q ss_pred HHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc-CCCcHHHHHHHHH
Q 002877 386 EAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM-RDENNHVKDTTAW 432 (872)
Q Consensus 386 ~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~ 432 (872)
.-++.++..+........-..++.+++..|...- ..+.++.+.....
T Consensus 275 ~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~~~r~~~~iv~ 322 (819)
T KOG1877|consen 275 GFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAKKPRLGLSIVL 322 (819)
T ss_pred ccchHHHHHHHHHHhhccchHHHHHHHHHHHhhcccccCccccchhHH
Confidence 3445555544432211212223455555555443 4445554444333
No 309
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=73.59 E-value=4.6 Score=26.57 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=22.0
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHH
Q 002877 409 HAGFDFLLNAMRDENNHVKDTTAWT 433 (872)
Q Consensus 409 ~~l~~~l~~~l~d~~~~vr~~a~~~ 433 (872)
+.+...+.+.+.|+++.||.+|..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4778889999999999999999765
No 310
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=73.27 E-value=80 Score=32.51 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhh--hHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKY--MPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
.....+..+.+.+++.++.|.-.|+.++.+++.+||..|..- -.++...+...+.++..+.|+...-.++...+..++
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999999876532 235666666666654556677766666666666554
Q ss_pred CCccccHHHHHHHHHHHhcC
Q 002877 684 DKVLPFCDGIMSLLLNALSN 703 (872)
Q Consensus 684 ~~~~~~~~~i~~~l~~~l~~ 703 (872)
.+ |-+ .+|..+.+-|..
T Consensus 122 ~D--p~l-sLi~~l~~klk~ 138 (462)
T KOG2199|consen 122 KD--PSL-SLISALYKKLKE 138 (462)
T ss_pred cC--cch-hHHHHHHHHHHH
Confidence 21 222 445555555544
No 311
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=72.90 E-value=27 Score=29.65 Aligned_cols=77 Identities=26% Similarity=0.248 Sum_probs=51.2
Q ss_pred ccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHH---HHHHHHHHhhccCCC-----cchhHH
Q 002877 454 ENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLT---SIIAELLRAADRTDV-----GGSKLR 524 (872)
Q Consensus 454 ~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~---~il~~l~~~l~~~~~-----~~~~vr 524 (872)
..+..+++.|.+.|++ ++.|+..+...|..+|... +..+...+. .++..+...-..+|. ....||
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G------~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR 107 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG------NSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVR 107 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC------CHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHH
Confidence 4577899999999998 9999999999999999874 323332222 333343333332332 234678
Q ss_pred HHHHHHHHHHHh
Q 002877 525 SAAYETLNEVVR 536 (872)
Q Consensus 525 ~~a~~al~~l~~ 536 (872)
..|-+++..+..
T Consensus 108 ~~A~El~~~if~ 119 (122)
T cd03572 108 EEAQELIKAIFS 119 (122)
T ss_pred HHHHHHHHHHhc
Confidence 888888877654
No 312
>PHA01351 putative minor structural protein
Probab=72.57 E-value=1.7e+02 Score=32.74 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHH-HhcC---CcHHHHHHHHHHHHHHH
Q 002877 811 VTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSE-CLRS---DDEQLKETAGWTQGMIN 867 (872)
Q Consensus 811 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~-~~~~---~~~~~~~~a~~~~~~~~ 867 (872)
++...+..+.+.++ .+..++|-.+ +..+-++ .++| .||.....+.|.--+..
T Consensus 230 i~de~~tt~ke~ik---epfisdfkis--~reifneiglgdipfadp~f~~i~~wv~arsf 285 (1070)
T PHA01351 230 IRDELATTLKEFIK---EPFISDFKIS--AREIFNEIGLGDLPFADPPFQLIGRWVAVRSF 285 (1070)
T ss_pred HHHHHHHHHHHHhh---ccchhhhhhh--HHHHHHhcCCCCCCCCCCcHHHHHHHHHHhhH
Confidence 33345555555433 2333333222 3344444 4555 78999999999765543
No 313
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=72.30 E-value=1.3e+02 Score=31.53 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=88.1
Q ss_pred hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhh
Q 002877 367 PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAM-----RDENNHVKDTTAWTLSRIFEL 440 (872)
Q Consensus 367 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l-----~d~~~~vr~~a~~~l~~l~~~ 440 (872)
|.++.++.+++.|.+....-++..++|.++..-. .. ...+. +++..+++.+ -|.+.+++.+++.++..+.-=
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-IC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 4588889999999888888899999999997532 21 11222 5556666555 477888999999999887632
Q ss_pred ccCCCCCccccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh---HHHHHHHHHHhhcc
Q 002877 441 LHCPATGFSVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY---LTSIIAELLRAADR 515 (872)
Q Consensus 441 ~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~---~~~il~~l~~~l~~ 515 (872)
.++ ...+. ..+.++++..+.- .|.|.-.-...+.-+.+.- +.+..- -+..+..+......
T Consensus 392 v~n--------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q-------e~~a~eL~kn~~l~ekLv~Wsks 456 (604)
T KOG4500|consen 392 VSN--------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-------EYIACELAKNPELFEKLVDWSKS 456 (604)
T ss_pred CCc--------hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch-------HHHHHHHhcCHHHHHHHHHhhhC
Confidence 221 11122 2355666666665 6666554444444443331 111110 13455566665554
Q ss_pred CCCcchhHHHHHHHHHHHHHhc
Q 002877 516 TDVGGSKLRSAAYETLNEVVRC 537 (872)
Q Consensus 516 ~~~~~~~vr~~a~~al~~l~~~ 537 (872)
+|- -.|.......+..++++
T Consensus 457 ~D~--aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 457 PDF--AGVAGESNRLLLGLIKH 476 (604)
T ss_pred Ccc--chhhhhhhHHHHHHHHh
Confidence 442 12344455556666665
No 314
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=72.28 E-value=1.3e+02 Score=31.41 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHH
Q 002877 384 CREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM-RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTV 462 (872)
Q Consensus 384 ~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (872)
.|-....++..+.. . . .-..++..+...+ ++.|+........+++.-...+.. +.-+.++..
T Consensus 3 ~r~~~~~~L~~l~~-~--~----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~----------~~~~~~~~~ 65 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-S--S----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS----------ELPKKVVDA 65 (339)
T ss_pred HHHHHHHHHHhCCC-c--c----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc----------CCCHHHHHH
Confidence 34444555555543 1 1 2234444444444 467888888888888877766622 234678889
Q ss_pred HHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhc
Q 002877 463 LLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAAD 514 (872)
Q Consensus 463 l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~ 514 (872)
+.+++.| .+.+|..-+.+++..+... . .....++...+++.+.+.++
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~~~----~-~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALWES----P-NSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHhhc----c-CchHHHHHHHHHHHHHHHHH
Confidence 9999998 7778888777777777511 0 23334555666666665553
No 315
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=70.88 E-value=37 Score=28.90 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=50.3
Q ss_pred hHHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Q 002877 407 LVHAGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLA 485 (872)
Q Consensus 407 ~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~ 485 (872)
++..++|.+...+. ...+..|.++...++.++...+- ..+.++.++..+.+....... ...+..++..++
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L--------~~~~l~~l~~~i~~~~~~~~~-~~~~l~~L~~l~ 73 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL--------SDEVLNALMESILKNWTQETV-QRQALICLIVLC 73 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC--------cHHHHHHHHHHHHhccccchh-HHHHHHHHHHHH
Confidence 57789999999998 88899999999999999876652 334444444444444443111 456777777777
Q ss_pred Hhh
Q 002877 486 QGY 488 (872)
Q Consensus 486 ~~~ 488 (872)
+..
T Consensus 74 q~q 76 (121)
T PF12397_consen 74 QSQ 76 (121)
T ss_pred Hcc
Confidence 553
No 316
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.23 E-value=2.8e+02 Score=34.46 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=101.9
Q ss_pred hhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHH
Q 002877 346 ISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNH 425 (872)
Q Consensus 346 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~ 425 (872)
.+....+.+-.+....+ +.+-.++|.+..-+.+++-.+|.-|+..+|.+..... ..+....+.++...+..+.|.++.
T Consensus 238 ~~~~~he~i~~L~~~~p-~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 238 LKIKYHELILELWRIAP-QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-SQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred hhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-hhhcccchHHHHHHHHHhccCChh
Confidence 33344445555554443 3344567888877778888899999999998876543 333344567888889999999999
Q ss_pred HHHHHHHHHHHHHhhccCCC-------------CC---------------ccccCcccHHHHHHHHHHHhhc-ChHHHHH
Q 002877 426 VKDTTAWTLSRIFELLHCPA-------------TG---------------FSVISPENLQRILTVLLESIKD-APNVAEK 476 (872)
Q Consensus 426 vr~~a~~~l~~l~~~~~~~~-------------~~---------------~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~ 476 (872)
||..+........-..+... .+ .....-.+.+.++..+...+.| .++||..
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~ 395 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQ 395 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHH
Confidence 99988877655443222110 00 0000123344466667777788 9999999
Q ss_pred HHHHHHHHHHh-hccCCCCCCCchhhHHHHHHHHHHhh
Q 002877 477 VCGAIYYLAQG-YEDAGPSSSLLSPYLTSIIAELLRAA 513 (872)
Q Consensus 477 a~~al~~l~~~-~~~~~~~~~~l~~~~~~il~~l~~~l 513 (872)
|...+..+-+. +......+..+.+.+..|-..++..+
T Consensus 396 Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~ 433 (1266)
T KOG1525|consen 396 AMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLY 433 (1266)
T ss_pred HHHHHHHHHHHHHHhhccCcccccccccccchhHHhhH
Confidence 99999888875 11111113444444444444444444
No 317
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.13 E-value=3.1e+02 Score=34.50 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=90.3
Q ss_pred CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccch--hhHHHHHHHH
Q 002877 104 PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQ--DEVNAVLTAV 181 (872)
Q Consensus 104 ~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~--~~~~~l~~~l 181 (872)
.+..||..+.++++.-+ ..+|..++..+-....+. +..+.+.+...+..+........+.. ..+...++.+
T Consensus 1049 ~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~--~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl 1121 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDS--SKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCL 1121 (1514)
T ss_pred CcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccc--hhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHH
Confidence 35668888888887211 248999999999888887 77788888888776655543333311 3345555555
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHHHHHHHhh-----hh------hhhHHHHHHHHHH---HhhcCCcHHHHHHHHHHHHH
Q 002877 182 VQGMNLAEHSAEVRLAATRALYNALDFALTN-----FQ------NEMERNYIMKVVC---ETAKSKEVEIRQAAFECLVS 247 (872)
Q Consensus 182 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-----~~------~~~~~~~ll~~l~---~~~~~~~~~~~~~~~~~l~~ 247 (872)
.....+. .....-..+++.+..++..+... +. ...+..+.++.++ ....+...++|..+++.+-.
T Consensus 1122 ~~F~~~~-~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~ 1200 (1514)
T KOG0929|consen 1122 EEFTKNL-GFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFD 1200 (1514)
T ss_pred HHHHHhc-CCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHH
Confidence 5544431 11222233444333333322222 11 0111112233332 23346788999999999999
Q ss_pred HHHhhhhhhH-HhHHHHHHHH
Q 002877 248 IASTYYEVLE-PYMQTLFELT 267 (872)
Q Consensus 248 l~~~~~~~~~-~~l~~l~~~~ 267 (872)
+...+++.|. +....++..+
T Consensus 1201 il~~~g~~F~~~~We~v~~~~ 1221 (1514)
T KOG0929|consen 1201 ILKEHGDDFSKEFWEDVFRIL 1221 (1514)
T ss_pred HHHhhhhhccHHHHHHHHHhe
Confidence 9998887775 4456666643
No 318
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=68.82 E-value=59 Score=28.27 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=55.2
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHH
Q 002877 409 HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYYLA 485 (872)
Q Consensus 409 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~ 485 (872)
...+..|.+.+.+++|.+...|+..+..+.+.++. .....-.-..+++.|...+.+ .+.|+..+...+..-.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~-----~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGS-----KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-----HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 46777888899999999999999999999988765 111111123466666666665 3449999999888888
Q ss_pred Hhhc
Q 002877 486 QGYE 489 (872)
Q Consensus 486 ~~~~ 489 (872)
..+.
T Consensus 111 ~~f~ 114 (133)
T smart00288 111 DAFK 114 (133)
T ss_pred HHHc
Confidence 8773
No 319
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=68.51 E-value=33 Score=30.17 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=60.1
Q ss_pred HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccH--HHHHHH-HHHHhcCC-CCCCCCchhHHHHHHHHHHhh
Q 002877 650 EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFC--DGIMSL-LLNALSNS-QLNRSVKPPILSCFGDIALAI 725 (872)
Q Consensus 650 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~-~~~~~~~~~~~~~l~~l~~~~ 725 (872)
..+-.|.+.+....++.+...|+.++..+++++|..|...+ ..++.. |.+.+... ..+..|+..++..+..-+..+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 45555555565444566888899999999999997776544 467776 77777532 124578888888888888877
Q ss_pred ccch-hhhHHHHHHHH
Q 002877 726 GVHF-EKYVPHALQMM 740 (872)
Q Consensus 726 ~~~~-~~~l~~i~~~l 740 (872)
+..- .+++...+..|
T Consensus 118 ~~~~~l~~i~~~y~~L 133 (141)
T cd03565 118 RGSPDLTGVVEVYEEL 133 (141)
T ss_pred CCCccchHHHHHHHHH
Confidence 5431 23444444443
No 320
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=68.40 E-value=83 Score=27.64 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcC-C-cHH--HHHHHHHHHHHHH
Q 002877 174 VNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKS-K-EVE--IRQAAFECLVSIA 249 (872)
Q Consensus 174 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~-~~~--~~~~~~~~l~~l~ 249 (872)
....+..+.+.+.+ .++.++..|+..|-.++...+..|..+.....+++.+..++.+ . .+. ++..+++.+....
T Consensus 40 ~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 45566666777777 6889999999999999887776665543333366666665542 2 333 8999999999888
Q ss_pred Hhh
Q 002877 250 STY 252 (872)
Q Consensus 250 ~~~ 252 (872)
..+
T Consensus 118 ~~f 120 (140)
T PF00790_consen 118 EAF 120 (140)
T ss_dssp HHT
T ss_pred HHH
Confidence 776
No 321
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=68.18 E-value=2.4e+02 Score=32.91 Aligned_cols=168 Identities=11% Similarity=0.129 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchh-HHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q 002877 667 VCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPP-ILSCFGDIALAIGVHFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 667 v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~ 745 (872)
++...+..+.-+...+++.+.|+.-..++.+...+.+-+ ++..+.. ....+..+....+.- .+...+.+.....
T Consensus 257 l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit-~~~~~d~Lv~k~l~~l~~v~k~~----irk~~e~l~n~~~ 331 (947)
T COG5657 257 LKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTIT-RPYIRDYLVSKSLTVLINVIKYP----IRKTAEVLSNVSE 331 (947)
T ss_pred ecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhc-CccccchhhhhHHHHHHHhhccc----cHHHHHHHHHHHH
Confidence 334455555556666667777777777777777766532 3333332 223444444444321 1222222222100
Q ss_pred hccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhh
Q 002877 746 ACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADA 825 (872)
Q Consensus 746 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~ 825 (872)
.+....++.+. ...+. ..++.+.++.+..++.+.+. +..+..-++|..+...+++..+.
T Consensus 332 -----------------~~~~~lvd~l~--l~n~~-lreed~E~~~ddp~eyire~-s~~dye~~vr~~~~~~l~~~f~~ 390 (947)
T COG5657 332 -----------------NLINNLVDLLI--LPNLI-LREEDLEEWEDDPLEYIREQ-SKTDYEVNVRPCIENELKDLFDV 390 (947)
T ss_pred -----------------HHHHHHHHHHh--hhccc-cCcccccccccCHHHHHHhh-ccccchhhhhHHHHHHHHHHHHH
Confidence 00011111110 00000 02233556666666666654 34445678888899999999998
Q ss_pred hCcchhhhccCchHHHHHHHHHhcCC---cHHHHHHHHHHHHHH
Q 002877 826 LGPNTKLLFKDSSFCNDFMSECLRSD---DEQLKETAGWTQGMI 866 (872)
Q Consensus 826 ~~~~~~~~~~~~~~v~~ll~~~~~~~---~~~~~~~a~~~~~~~ 866 (872)
.| ... .+++...+......+ +..++.-|+||.-++
T Consensus 391 ~~-~i~-----~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~ 428 (947)
T COG5657 391 FG-RIA-----VGHELTVIESEATTPNILDEARQLFAAYASFGL 428 (947)
T ss_pred Hh-hHh-----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhh
Confidence 88 322 234566666533333 455666666665443
No 322
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=67.17 E-value=88 Score=27.44 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcc-----cchHhHHHHHHHHHHHHHH
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQN-----SEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~ 680 (872)
...+..+...+.+.++.+.-.|+.++..+++++|..|...+ ..++.-+.+.+.. ..+..|+...+.++...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46777788888888999999999999999999998775433 2455555555532 2346799999999999888
Q ss_pred Hhc
Q 002877 681 ALD 683 (872)
Q Consensus 681 ~~~ 683 (872)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 876
No 323
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=66.85 E-value=1.4e+02 Score=29.64 Aligned_cols=169 Identities=13% Similarity=0.216 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC--------CccccHHHHHHHHHHHhcCCC-CC-CCCchhHH
Q 002877 646 KYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD--------KVLPFCDGIMSLLLNALSNSQ-LN-RSVKPPIL 715 (872)
Q Consensus 646 ~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~--------~~~~~~~~i~~~l~~~l~~~~-~~-~~~~~~~~ 715 (872)
.-++.+-+.+.+++.++... ..++.++..++....+ .+.-.+-..+|.++..+.++. .. ...-..++
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~---e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTY---ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA 136 (262)
T ss_pred CCchhHHHHHhCccCCCCcH---HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH
Confidence 45677889999999876543 5566777777654321 122233456777777777663 10 12223455
Q ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhh-hhHHHH
Q 002877 716 SCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMM-PYAQHL 794 (872)
Q Consensus 716 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i 794 (872)
..++.+|...| .+-+..++...-+. . | .+.-+.+..++..+.+ .|. .|--.+
T Consensus 137 ~~La~~a~~~~---~~~La~il~~ya~~---~------------f-----r~~~dfl~~v~~~l~~----~f~P~~~~~~ 189 (262)
T PF14225_consen 137 EALAQVAEAQG---LPNLARILSSYAKG---R------------F-----RDKDDFLSQVVSYLRE----AFFPDHEFQI 189 (262)
T ss_pred HHHHHHHHhCC---CccHHHHHHHHHhc---C------------C-----CCHHHHHHHHHHHHHH----HhCchhHHHH
Confidence 66666665433 22444544444332 0 0 0011112233333333 254 444667
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcC
Q 002877 795 LQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRS 850 (872)
Q Consensus 795 l~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~ 850 (872)
+.++...+.+ ....+|..++.+|.-+...+.... ....+++.++++. +..
T Consensus 190 l~~Ll~lL~n--~~~w~~~~~L~iL~~ll~~~d~~~---~~~~dlispllrl-L~t 239 (262)
T PF14225_consen 190 LTFLLGLLEN--GPPWLRRKTLQILKVLLPHVDMRS---PHGADLISPLLRL-LQT 239 (262)
T ss_pred HHHHHHHHhC--CcHHHHHHHHHHHHHHhccccCCC---CcchHHHHHHHHH-hCC
Confidence 7777777755 568999999999999999988763 3778899999887 544
No 324
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=66.42 E-value=2.7e+02 Score=32.78 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=37.3
Q ss_pred HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 002877 650 EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNAL 701 (872)
Q Consensus 650 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 701 (872)
.+...+.++++.+.+.+++...+.-+....+.....+.+-++++-+.|++.+
T Consensus 649 ~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~ 700 (1697)
T KOG3687|consen 649 LLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSML 700 (1697)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHH
Confidence 4566788888877778888777777766665555556667777777777765
No 325
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=65.93 E-value=1.8e+02 Score=30.49 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=59.0
Q ss_pred HHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHH--HHhhccCCCCCccccCcccHHHHHHHHHHHhh
Q 002877 391 AFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSR--IFELLHCPATGFSVISPENLQRILTVLLESIK 468 (872)
Q Consensus 391 ~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 468 (872)
-+..+.+...+..+...+..+...+-.+++++|-.|.+.|+..+.. +...+.. .....++.++++|.+..+
T Consensus 322 ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~-------n~~~ilPiiFpaLyr~sk 394 (457)
T KOG2085|consen 322 ELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQ-------NAEVILPIVFPALYRNSK 394 (457)
T ss_pred hHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHh-------ccceeeehhhHHHHHHHH
Confidence 3444555554555666677888888999999999999988766542 2333322 334567778888888777
Q ss_pred c--ChHHHHHHHHHHHHHHHh
Q 002877 469 D--APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 469 d--~~~v~~~a~~al~~l~~~ 487 (872)
. |..+..-++..+..+++.
T Consensus 395 ~hWN~~i~~l~~nvlk~f~em 415 (457)
T KOG2085|consen 395 SHWNQAIHNLILNVLKTFMEM 415 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 6 555555556666666554
No 326
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=65.35 E-value=17 Score=32.74 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=80.0
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHh--HHhHHHHHHHhcC-
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPL--VHAGFDFLLNAMR- 420 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~--l~~l~~~l~~~l~- 420 (872)
.++|..+.-++.++.+..++.....+-.++...+...+....-.++.++..+-.+. ++..... -+.+++.++....
T Consensus 19 ~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 19 EEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHHHHCCTTTHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHHHHHhhhhHHHHHHHHHhc
Confidence 45788888888888766667777777888888877655555566667777766554 2322221 1256666666666
Q ss_pred -CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChH-HHHHHHHHHHH
Q 002877 421 -DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APN-VAEKVCGAIYY 483 (872)
Q Consensus 421 -d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~-v~~~a~~al~~ 483 (872)
.++..+..+++.++..-+..-.- -.......++.|-..... +.. +|..|.-.|..
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~~--------r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKSC--------RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHHH--------HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHHH--------HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 67888888888888765422111 112334455555566643 455 77777666543
No 327
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=64.99 E-value=1.5e+02 Score=29.36 Aligned_cols=184 Identities=16% Similarity=0.218 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHhhccCC-CCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh
Q 002877 425 HVKDTTAWTLSRIFELLHCP-ATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY 501 (872)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (872)
+.-..+...++.+....+.. .........+.+..+-..++..|.. +...-+.+..+|..+|+.+-... ...+...
T Consensus 62 r~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~--~~~l~~L 139 (255)
T PF10350_consen 62 RSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSN--NPELSEL 139 (255)
T ss_pred HHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCC--CchHHHh
Confidence 33444555566666544310 0000112345667777777777765 78888888889999998763111 2333344
Q ss_pred HHHHHHHHHHhhccC-CCcchhHHH-H-HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHH
Q 002877 502 LTSIIAELLRAADRT-DVGGSKLRS-A-AYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDL 578 (872)
Q Consensus 502 ~~~il~~l~~~l~~~-~~~~~~vr~-~-a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 578 (872)
-..-+..++..+... .......|+ + .--++..+....+ ....+.+...|..|++.-... ....++. ....-
T Consensus 140 P~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~-~~~~~ll~~~~~~Ll~ia~~~----~~~~~~~-~~d~~ 213 (255)
T PF10350_consen 140 PEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEP-SNSRPLLHRTMKSLLEIAKSP----STQHEDE-KSDLP 213 (255)
T ss_pred HHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHhcCC----ccccccc-ccchH
Confidence 445555555555533 111001233 2 2233444555544 322245555555555444332 1111111 11234
Q ss_pred HHHHHHHHHHHHHH--cCCCccchhhchhhHHHHHHHHHHHHccCC
Q 002877 579 QASLCGVLQVIIQK--FSSTDATKSFILQTADQIMVLFLRVFACRS 622 (872)
Q Consensus 579 ~~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 622 (872)
+.+++.+|..+++. ++. .+.+|+.+.+..-+..+.++.
T Consensus 214 qVHAlNiLr~if~ds~L~~------~~~~yi~~~l~lai~~f~s~~ 253 (255)
T PF10350_consen 214 QVHALNILRAIFRDSKLSE------DVSPYIEDALILAIKGFSSPD 253 (255)
T ss_pred HHHHHHHHHHHHhcchhHH------HHHHHHHHHHHHHHHhCCCcc
Confidence 56778888887753 344 677888888877777776654
No 328
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=64.94 E-value=2.6e+02 Score=32.04 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh---HHHHHHHHHHhhccCCCcchhHHHHHHH
Q 002877 455 NLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY---LTSIIAELLRAADRTDVGGSKLRSAAYE 529 (872)
Q Consensus 455 ~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~---~~~il~~l~~~l~~~~~~~~~vr~~a~~ 529 (872)
+.+.++..-+..+.. ++.+.+++..+|.+++-... .-...+..- -+..+|.++..+...+ ..|...+..
T Consensus 515 w~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~---~~~~~~~~~v~~kekgl~~l~~ll~~~~---~~vv~s~a~ 588 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW---TWSEYMRGAVFRKEKGLPPLVELLRNDD---SDVVRSAAG 588 (717)
T ss_pred ecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC---cchhHHHhhhhhhccCccHHHHHHhcCC---chHHHHHHH
Confidence 345666654555554 88899999999999875421 001111111 1345677778887433 455667777
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHH
Q 002877 530 TLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQ 591 (872)
Q Consensus 530 al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 591 (872)
+|..+.....+. ...-...||.++..|..... ......++...+|.++..++.
T Consensus 589 ~LrNls~d~rnk--~ligk~a~~~lv~~Lp~~~~-------~~~~sedtv~~vc~tl~niv~ 641 (717)
T KOG1048|consen 589 ALRNLSRDIRNK--ELIGKYAIPDLVRCLPGSGP-------STSLSEDTVRAVCHTLNNIVR 641 (717)
T ss_pred HHhhhccCchhh--hhhhcchHHHHHHhCcCCCC-------CcCchHHHHHHHHHhHHHHHH
Confidence 887777654311 11223567777777664321 112234455677788877763
No 329
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=64.54 E-value=1.1e+02 Score=27.48 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC---ChhHHHHH-HHHHHHHHHHhhhHHHhhh
Q 002877 573 EKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR---SSTVHEEA-MLAIGALAYATGPEFAKYM 648 (872)
Q Consensus 573 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~v~~~a-~~~l~~l~~~~~~~~~~~l 648 (872)
.....+...+..++..++-++.+. .+.|.+-++++=-..-+... ...-|..+ +..+..++...+.-|.||.
T Consensus 32 ~~v~~vE~~v~~~~~~lV~KLnE~-----~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~ 106 (153)
T PF08146_consen 32 EDVDEVESSVISAFVSLVLKLNEA-----TFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYF 106 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc-----hhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888999999999886 77776555555333322221 22334333 4556788888889999999
Q ss_pred HHHHHHHHhhhcc
Q 002877 649 PEFYQYLQMGLQN 661 (872)
Q Consensus 649 ~~i~~~l~~~l~~ 661 (872)
..+++.....|+.
T Consensus 107 ~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 107 SYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777764
No 330
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=64.42 E-value=76 Score=26.67 Aligned_cols=73 Identities=10% Similarity=-0.037 Sum_probs=50.8
Q ss_pred cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH--hHHHHHHHh----c--CCCcHHHHHHHHHHHH
Q 002877 364 EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH--AGFDFLLNA----M--RDENNHVKDTTAWTLS 435 (872)
Q Consensus 364 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~l~~~----l--~d~~~~vr~~a~~~l~ 435 (872)
.....++..+...+.+.+|++..-|+..+-.+...++ +.+..++. ..+..++.. . .+.+..||..+..++.
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g-~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG-ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 4456788889899999999999999999999999987 44443332 222222221 1 3567889988887765
Q ss_pred HH
Q 002877 436 RI 437 (872)
Q Consensus 436 ~l 437 (872)
..
T Consensus 112 ~w 113 (115)
T cd00197 112 LW 113 (115)
T ss_pred HH
Confidence 44
No 331
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=64.27 E-value=54 Score=27.90 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=51.8
Q ss_pred cchhchHHHHHhhcc-CCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhc
Q 002877 364 EVVPLVMPFVEANIV-KSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELL 441 (872)
Q Consensus 364 ~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
.+++.++|++...+. +.....|-++++.++.++.... --...+..++..+.+....... ...+.-++..+....
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 467788999999998 6677889999999999998653 2233455666666665555444 466777777777544
No 332
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=64.19 E-value=48 Score=29.86 Aligned_cols=144 Identities=16% Similarity=0.229 Sum_probs=69.6
Q ss_pred HHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHh
Q 002877 697 LLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGIL 776 (872)
Q Consensus 697 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 776 (872)
++..|.......++|..+.-++.++....++.+...+..++..++..-. + +-...++.++..+.
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~--------------~--d~~i~~~~~l~~lf 71 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE--------------M--DSLIIAFSALTALF 71 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--------------C--CHHHHHHHHHHHHC
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc--------------c--hhHHHHHHHHHHHh
Confidence 3444443122788999999999999877777777666666665553211 0 01122344454554
Q ss_pred hccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHh-cCCcHH-
Q 002877 777 QGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECL-RSDDEQ- 854 (872)
Q Consensus 777 ~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~-~~~~~~- 854 (872)
.+.-......|. -+.+++.+.........++.+..+++.+|. .+|....-..+... -..++++... .+.++.
T Consensus 72 p~~~dv~~~l~~--~eg~~~~l~~~~~~~~~~~~~~~~~lell~---aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ 145 (157)
T PF11701_consen 72 PGPPDVGSELFL--SEGFLESLLPLASRKSKDRKVQKAALELLS---AACIDKSCRTFISK-NYVSWLKELYKNSKDDSE 145 (157)
T ss_dssp TTTHHHHHHHCC--TTTHHHHHHHHHH-CTS-HHHHHHHHHHHH---HHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-
T ss_pred CCCHHHHHHHHh--hhhHHHHHHHHHhcccCCHHHHHHHHHHHH---HHHccHHHHHHHHH-HHHHHHHHHHccccchHH
Confidence 443322111111 022333333333312245676667666654 44444433333333 2334444435 355555
Q ss_pred HHHHHHHH
Q 002877 855 LKETAGWT 862 (872)
Q Consensus 855 ~~~~a~~~ 862 (872)
+|..|+=+
T Consensus 146 ir~~A~v~ 153 (157)
T PF11701_consen 146 IRVLAAVG 153 (157)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655433
No 333
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=63.15 E-value=2.9e+02 Score=35.23 Aligned_cols=186 Identities=14% Similarity=0.121 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhhcccCCcccchHHHH---hhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCc
Q 002877 53 TESRRLAGIMLKNSLDAKDATTKEDLA---KQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQW 129 (872)
Q Consensus 53 ~~vr~~a~~~l~~~i~~~~~~~~~~~~---~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~ 129 (872)
..-|..+-.+||+++...--+. .-.. .....+-.+....+....-.++.++++.++.-++.....+.... ....-
T Consensus 394 ~~~~k~ie~ilkkKI~~g~it~-~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f-ds~~q 471 (1426)
T PF14631_consen 394 EDNRKSIEKILKKKIKSGHITE-QLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF-DSYCQ 471 (1426)
T ss_dssp HHHHHHHHHHHHHHHTTT-S-H-HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHH
T ss_pred ccchHHHHHHHHHHHHhCcccH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc-cchhH
Confidence 4557778888998886431111 0000 00011111122222222223556788999999999998888764 11123
Q ss_pred hHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 002877 130 PELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFA 209 (872)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 209 (872)
.+++..|+..+.++ +.....+|+.+|..++... ++.+ .++ ..++..++..+.+= ...++|.. ...|..+.. -
T Consensus 472 qeVv~~Lvthi~sg--~~~ev~~aL~vL~~L~~~~-~~~l-~~f-a~~l~giLD~l~~L-s~~qiR~l-f~il~~La~-~ 543 (1426)
T PF14631_consen 472 QEVVGALVTHIGSG--NSQEVDAALDVLCELAEKN-PSEL-QPF-ATFLKGILDYLDNL-SLQQIRKL-FDILCTLAF-S 543 (1426)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH--HHHH-HHT-HHHHHGGGGGGGG---HHHHHHH-HHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhcc-HHHH-HHH-HHHHHHHHHHHhcC-CHHHHHHH-HHHHHHHhc-C
Confidence 78999999999887 7777889999999999865 4444 333 33444445555441 12344433 555555432 1
Q ss_pred HhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 002877 210 LTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIA 249 (872)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (872)
... .....++.+.-++.+.+.+.+...++..+-....++
T Consensus 544 ~~~-~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 544 DSS-SSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HSS----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred Ccc-cchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 111 111122335555666777777777654443333333
No 334
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=62.81 E-value=2.3e+02 Score=30.81 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHhHH--HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCc
Q 002877 234 EVEIRQAAFECLVSIASTYYEVLEPYMQ--TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPN 311 (872)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 311 (872)
+.....+++.++..+...-+- +..-+. .+.+.++..+.+++--+...+.. .+|..-.+.. .- .
T Consensus 402 d~l~~~a~~l~LkS~SrSV~~-LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~---~icn~vv~fs-----nL------~ 466 (743)
T COG5369 402 DDLDFVAIVLFLKSMSRSVTF-LRTGLLDYPIVELLIDALSNPEIMIEFPDTI---DICNKVVPFS-----NL------G 466 (743)
T ss_pred hHHHHHHHHHHHHHhhHHHHH-HHhhccccchHHHHHHHhcCccceeeccchh---hhhheeeecc-----ch------H
Confidence 344456777777776654322 222222 46777777777654333333322 2333211100 00 0
Q ss_pred hHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC-----cchhchHHHHHhhccCCCcchHH
Q 002877 312 YHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD-----EVVPLVMPFVEANIVKSDWRCRE 386 (872)
Q Consensus 312 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~r~ 386 (872)
..|+. ..++.++.+.++..+ | ..+.-....+..+...+.+ .+...-++.+.++.+|+.|.+.+
T Consensus 467 ~~fL~---~~iIdvl~~~v~sKD-d--------aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~ 534 (743)
T COG5369 467 AGFLE---KSIIDVLVNLVMSKD-D--------ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQH 534 (743)
T ss_pred HHHHH---hhHHHHHHHHhhcch-h--------hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHH
Confidence 11222 256677776665321 1 2333333344444433321 12223367788899999999999
Q ss_pred HHHHHHHHhhcCCCc-cchhHh------HHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 002877 387 AATYAFGSVLEGPTI-DKLAPL------VHAGFDFLLNAMRDENNHVKDTTAWTLSRIFE 439 (872)
Q Consensus 387 aal~~l~~i~~~~~~-~~~~~~------l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 439 (872)
..+..+..+.-.... ++.+.. ..-+...++..+...+|..-...++.+-+++.
T Consensus 535 q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa 594 (743)
T COG5369 535 QVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAA 594 (743)
T ss_pred HHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHh
Confidence 999999988753321 111110 11245666666777777776667777766664
No 335
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.58 E-value=2.3e+02 Score=30.62 Aligned_cols=113 Identities=6% Similarity=0.084 Sum_probs=60.7
Q ss_pred hHHHHHHHHhhccC--CccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 002877 130 PELIRSLLNNMTQQ--DSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 130 ~~ll~~l~~~l~~~--~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 207 (872)
.++-..|.++|... ...+..|+..+.+|.-+-.. ..+ ....++..++..+.. .+...|..+..-+...+.
T Consensus 15 a~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk---~~i---~~~~LL~lff~l~~~--~dk~lRkllythiv~~Ik 86 (616)
T KOG2229|consen 15 ANFPSELKDLLRTNHTVLPPELREKIVKALILLRNK---NLI---VAEDLLELFFPLLRC--GDKNLRKLLYTHIVTTIK 86 (616)
T ss_pred HhhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc---CcC---CHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHH
Confidence 33434444444432 12567888877777554443 222 355677788888877 456777766655555444
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Q 002877 208 FALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAS 250 (872)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (872)
.+...-.+.--..-+-.+++..+..+++.-...++..+..+-.
T Consensus 87 n~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 87 NINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYK 129 (616)
T ss_pred HHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 2222111100112244556677766677655666666655543
No 336
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=61.86 E-value=25 Score=26.59 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhhcCCCccchhHhHH--hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhh
Q 002877 384 CREAATYAFGSVLEGPTIDKLAPLVH--AGFDFLLNAMR-DENNHVKDTTAWTLSRIFEL 440 (872)
Q Consensus 384 ~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~ 440 (872)
..++++++++.++... ..+ ++++ .+++.+++... .+...+|-+++++++-++..
T Consensus 3 ~lKaaLWaighIgss~--~G~-~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSP--LGI-QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcCh--HHH-HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4678999999998753 222 2333 68888888764 77889999999999998753
No 337
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=61.81 E-value=2.7e+02 Score=31.24 Aligned_cols=100 Identities=9% Similarity=0.068 Sum_probs=63.7
Q ss_pred chHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 368 LVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 368 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
.-+..+.+++.+.+...+-++++++|....+.. +... ..+..+...+++++..+|-.+..-||-.....
T Consensus 415 ~gL~qldkylys~~~~ikaGaLLgigi~~~gv~-ne~d----palALLsdyv~~~~s~~ri~aIlGLglayaGs------ 483 (878)
T KOG2005|consen 415 KGLEQLDKYLYSDESYIKAGALLGIGISNSGVF-NECD----PALALLSDYLQSSSSIHRIGAILGLGLAYAGS------ 483 (878)
T ss_pred hhHHHHHHHhhcCCchhhhccceeeeeeccccc-cccC----HHHHHHHHhccCCCceeehHHhhhhHHhhcCC------
Confidence 356777788887777778888888888776664 4333 45566677778888889998888877543221
Q ss_pred ccccCcccHHHHHHHHHHHhhc-ChH--HHHHHHHHHHHHH
Q 002877 448 FSVISPENLQRILTVLLESIKD-APN--VAEKVCGAIYYLA 485 (872)
Q Consensus 448 ~~~~~~~~~~~~l~~l~~~l~d-~~~--v~~~a~~al~~l~ 485 (872)
.-+.++..|.+.+.| +.. |..-|..+++.+.
T Consensus 484 -------q~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~If 517 (878)
T KOG2005|consen 484 -------QREEVLELLSPIMFDTKSPMEVVAFASLSLGMIF 517 (878)
T ss_pred -------chHHHHHHHhHHhcCCCCchhHHHHHHhhcceeE
Confidence 234555556666666 433 4444444444443
No 338
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=61.70 E-value=1.1e+02 Score=26.78 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=54.6
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------CCcHHHHHHHHHHHHHHH
Q 002877 176 AVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK------SKEVEIRQAAFECLVSIA 249 (872)
Q Consensus 176 ~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~~~~~~~~~l~~l~ 249 (872)
..+..+.+.+++ .++.+...|+..|-.++..++..|..+.....+++-+..++. ..+..++..++.++....
T Consensus 38 ~a~rai~krl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQS--PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345556666776 688999999999999998777766554333335555555553 246899999999999988
Q ss_pred Hhhh
Q 002877 250 STYY 253 (872)
Q Consensus 250 ~~~~ 253 (872)
..++
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 7664
No 339
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=61.42 E-value=1.4e+02 Score=28.01 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCC-CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCc
Q 002877 88 SYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQ-KQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISH 166 (872)
Q Consensus 88 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~-~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~ 166 (872)
+....+-..+++.-.+.-..||..|+.++..+.....+. ...| -.+.+...+..+...+.....+-.++..++.-+.
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~- 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-
Confidence 344455566666666777899999999999999544331 1122 2345555444331000011223333333332221
Q ss_pred cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 002877 167 QDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNAL 206 (872)
Q Consensus 167 ~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 206 (872)
+ ..+...++..+...... .+..+...+..+|..++
T Consensus 81 --~-~~y~~~ll~Glv~S~G~--~tesl~~~s~~AL~~~~ 115 (193)
T PF12612_consen 81 --L-PEYRYSLLSGLVVSAGG--LTESLVRASSAALLSYL 115 (193)
T ss_pred --c-HHHHHHHHhHHHhcCCC--CchhHHHHHHHHHHHHH
Confidence 1 23344455554444444 45566666667766654
No 340
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=61.28 E-value=1.2e+02 Score=26.80 Aligned_cols=77 Identities=8% Similarity=0.071 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcc-CChhHHHHHHHHHHHHHHHhhhHHHhhhH--HHHHH-HHhhhccc--chHhHHHHHHHHHHHHHHH
Q 002877 608 DQIMVLFLRVFAC-RSSTVHEEAMLAIGALAYATGPEFAKYMP--EFYQY-LQMGLQNS--EEYQVCAITVGVVGDVCRA 681 (872)
Q Consensus 608 ~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~--~i~~~-l~~~l~~~--~~~~v~~~a~~~l~~l~~~ 681 (872)
...+..+..-+.. .++.+...|+.++..+++++|..|...+. .++.. |.+.+... .+..|+...+.++...+..
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 4677777777764 57888888999999999999987764332 44443 44444422 2346899999999999888
Q ss_pred hcC
Q 002877 682 LDD 684 (872)
Q Consensus 682 ~~~ 684 (872)
++.
T Consensus 117 f~~ 119 (141)
T cd03565 117 FRG 119 (141)
T ss_pred hCC
Confidence 763
No 341
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.89 E-value=49 Score=32.91 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=62.8
Q ss_pred HHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccC
Q 002877 373 VEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVIS 452 (872)
Q Consensus 373 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 452 (872)
+...+.+.++.+|.+|+.-+..+.... ...+..+-...++.+.+.+.+..+ -+-|+.++.+++....- .
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~-~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l--------~ 76 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRG-LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL--------R 76 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccc-hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH--------H
Confidence 456667888999999997776665542 244555556788889999988887 55566777777643210 1
Q ss_pred cccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 453 PENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 453 ~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
...+..++..++..+.| ........|..+.++.+.
T Consensus 77 ~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 77 KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 11222233333334444 345556666666666543
No 342
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=59.22 E-value=2.3e+02 Score=29.51 Aligned_cols=52 Identities=8% Similarity=-0.084 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcC
Q 002877 346 ISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEG 398 (872)
Q Consensus 346 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 398 (872)
-.+.|++.+.+..+.+|+. ....+..-.....+.+..+|.-|+..|-.++.+
T Consensus 40 ~k~lasq~ip~~fk~fp~l-a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFPSL-ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHhhCchh-hhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 3455666677666666532 222333334455567777787777777777654
No 343
>PLN03205 ATR interacting protein; Provisional
Probab=58.37 E-value=2.3e+02 Score=29.34 Aligned_cols=138 Identities=12% Similarity=0.133 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCc--cccc---hhhHHHHHHHHHhc
Q 002877 110 HTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISH--QDLV---QDEVNAVLTAVVQG 184 (872)
Q Consensus 110 ~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~l~---~~~~~~l~~~l~~~ 184 (872)
.+..++...+.+..+-.-....+++.|++.+.-+ +..+...++.+|..+.+.+-+ ..++ .-.|..++....+.
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~--n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~Qi 379 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAE--TAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQI 379 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcC--chhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHH
Confidence 5677777777776543235678999999999888 778888899988888776532 1120 23466777766665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHH
Q 002877 185 MNLAEHSAEVRLAATRALYNALDFALTNFQNEMER-NYIMKVVCETAK-SKEVEIRQAAFECLVSIAS 250 (872)
Q Consensus 185 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~ 250 (872)
.... ....||..|+.+..-++.........+.+. ..+++.+.++++ ..--.+++.++..+--+.+
T Consensus 380 Av~~-TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 380 ASIR-TEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred Hhcc-chhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 4332 356899999988877654322211222221 236666777665 3345678888887766654
No 344
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=57.95 E-value=1.1e+02 Score=25.61 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHH--HHHHHHhh----hc-ccchHhHHHHHHHHHHHH
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPE--FYQYLQMG----LQ-NSEEYQVCAITVGVVGDV 678 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~----l~-~~~~~~v~~~a~~~l~~l 678 (872)
....++..+...+.+.++.+.-.|+.++..+++++|+.|..++.. ++..+... .. ...+..||..+..++...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456788888899999999999999999999999999888766542 22222221 11 112345777777666543
No 345
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=57.08 E-value=1.2e+02 Score=31.34 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=62.5
Q ss_pred hhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcc
Q 002877 375 ANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPE 454 (872)
Q Consensus 375 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (872)
+....++|..-...|--++.=- + --+..+..|.+.|.+.+|.|...|+..++.+...++.. ....-
T Consensus 19 e~nT~enW~~IlDvCD~v~~~~-----~----~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~-----~r~EV 84 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGSDP-----D----GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR-----FRLEV 84 (462)
T ss_pred cccccccHHHHHHHHHhhcCCC-----c----ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH-----HHHHH
Confidence 4445678865443333222211 1 23477889999999999999999999999998888761 11111
Q ss_pred cHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhc
Q 002877 455 NLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYE 489 (872)
Q Consensus 455 ~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (872)
.-..+...|...+.+ +++|++.-...+...++.+.
T Consensus 85 sSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 85 SSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred hhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 111222333334443 88888887777777777663
No 346
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=56.90 E-value=1.2e+02 Score=25.75 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHH
Q 002877 690 CDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIF 769 (872)
Q Consensus 690 ~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 769 (872)
...++..|.+.|++. ++.||..++.++-.++...++.|...+..=...+....+-...+++-..+ +....+|+.+-
T Consensus 36 ~~ei~d~L~kRL~~~--~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd--~~~~~VR~~A~ 111 (122)
T cd03572 36 CQELLEYLLKRLKRS--SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGD--SLNEKVREEAQ 111 (122)
T ss_pred HHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCc--chhHHHHHHHH
Confidence 457889999999987 79999999999999999888888877765555444433222212220111 12345677665
Q ss_pred HHHHhH
Q 002877 770 EAYSGI 775 (872)
Q Consensus 770 ~~~~~~ 775 (872)
+++..+
T Consensus 112 El~~~i 117 (122)
T cd03572 112 ELIKAI 117 (122)
T ss_pred HHHHHH
Confidence 555433
No 347
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=56.41 E-value=3.3e+02 Score=30.52 Aligned_cols=285 Identities=15% Similarity=0.149 Sum_probs=138.9
Q ss_pred chhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcH
Q 002877 345 NISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENN 424 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~ 424 (872)
.........+..+....+....+.+-.++.+.+-++++-..+-+.-++.-+++... ..+-.+.-..+-.+++.+..+..
T Consensus 243 ~lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygt-aeLc~~hv~~L~~Lik~lp~~~~ 321 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGT-AELCAHHVNLLAHLIKSLPSSSY 321 (559)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHcCCcch
Confidence 34455555666666666666777777777777778887777777777777776654 33333333333345555543222
Q ss_pred HHHHHHHHHHHHHHhhccCCC---C--Ccccc-CcccHHHHHHHH-HHHhhcChHHHHHHH----HHHHHHHHhhccCCC
Q 002877 425 HVKDTTAWTLSRIFELLHCPA---T--GFSVI-SPENLQRILTVL-LESIKDAPNVAEKVC----GAIYYLAQGYEDAGP 493 (872)
Q Consensus 425 ~vr~~a~~~l~~l~~~~~~~~---~--~~~~~-~~~~~~~~l~~l-~~~l~d~~~v~~~a~----~al~~l~~~~~~~~~ 493 (872)
. ...-...++|+...+.+.. + .++.. ..++ -.+...+ +..+. +..|..+. .....+++...+.+.
T Consensus 322 ~-~~~L~~LL~Rl~~~m~~~~q~~~v~~f~p~~~~~n-~~lw~~~~~~~L~--~~lr~~~~~~i~~~~~~~~~~~~~~~~ 397 (559)
T PF14868_consen 322 Q-LINLSILLRRLFFLMAPDHQSEFVQDFSPSAETEN-LLLWEGFPLNALS--DELRKQIVQEIFTLCFAFCQKWLSPSS 397 (559)
T ss_pred h-HhhHHHHHHHHHHhcCHHHHHHHHHhcCccccccc-hHHHHhccHHhCC--HHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 2 2224455677665554311 0 00001 0011 1111111 12222 23333332 223334444322111
Q ss_pred CCCCchhhHHHHHHHHHHhhccCCC-cchhHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHHHHHHhhhhcCcc
Q 002877 494 SSSLLSPYLTSIIAELLRAADRTDV-GGSKLRSAAYETLNEVVRCSN--ITETSQIIAELLPAIMGRLGQTLELQIVSSD 570 (872)
Q Consensus 494 ~~~~l~~~~~~il~~l~~~l~~~~~-~~~~vr~~a~~al~~l~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 570 (872)
.....-......+..++...+.... -+.+-+....+.++.+..... .....+|+..++..++..+...+.. +..+
T Consensus 398 ~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~--l~~~ 475 (559)
T PF14868_consen 398 CSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQL--LDPQ 475 (559)
T ss_pred cCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHh--cChH
Confidence 0111122233334444444432221 122235677777777766642 1234577777777777666555321 0000
Q ss_pred hh-------------hhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHH
Q 002877 571 DR-------------EKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALA 637 (872)
Q Consensus 571 ~~-------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 637 (872)
.- .....++-.++..++.+.+...++ +.-.+..+.+....-.++.+.++-+++.|+.+++.+|
T Consensus 476 ~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~----~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FA 551 (559)
T PF14868_consen 476 LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPE----SDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFA 551 (559)
T ss_pred HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCc----cccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 00 000113334444444443332221 1222345667777777788889999999999999998
Q ss_pred HHh
Q 002877 638 YAT 640 (872)
Q Consensus 638 ~~~ 640 (872)
+..
T Consensus 552 e~T 554 (559)
T PF14868_consen 552 ERT 554 (559)
T ss_pred ccC
Confidence 754
No 348
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.33 E-value=3e+02 Score=30.02 Aligned_cols=301 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcc
Q 002877 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFS 449 (872)
Q Consensus 370 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
++.+.+++.......+-+|+..++.-..... ...+..+..+-..++.++...+.+|..-+|....-...
T Consensus 415 l~~Ldkyly~de~~~KaGaLLGig~s~~~v~-----~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~------ 483 (881)
T COG5110 415 LETLDKYLYADESYRKAGALLGIGLSGLRVF-----EERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA------ 483 (881)
T ss_pred HHHHHHHHhcCcccccccceeeeeecccccc-----cccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH------
Q ss_pred ccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHH
Q 002877 450 VISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAY 528 (872)
Q Consensus 450 ~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~ 528 (872)
+.++..|.+.+.+ +..+...+..++.-=.--+ +..-......|++.++..-........ -+...
T Consensus 484 -------eevl~lL~Pi~~std~pie~~~~asltLg~vFv------GtcngD~ts~ilqtf~Er~~~e~~tqw--~RFla 548 (881)
T COG5110 484 -------EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFV------GTCNGDLTSLILQTFVERGKIESETQW--FRFLA 548 (881)
T ss_pred -------HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEe------eccCchHHHHHHHHHHHhhhhhhhhHH--HHHHH
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHH
Q 002877 529 ETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTAD 608 (872)
Q Consensus 529 ~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 608 (872)
-.+..+.-.-+ +..+-..+.+..+-..+.+. .+.+...++-.|. .-...++
T Consensus 549 LgLa~Lf~g~~--d~~d~v~eti~aIeg~ls~~---------------------~eiLv~~c~Y~GT------Gdvl~Iq 599 (881)
T COG5110 549 LGLASLFYGRK--DQVDDVEETIMAIEGALSKH---------------------EEILVKGCQYVGT------GDVLVIQ 599 (881)
T ss_pred HHHHHHHcccc--chhHHHHHHHHHhcchhhhh---------------------HHHHHhhceeccc------CcHHHHH
Q ss_pred HHHHHHHHHHccC--ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCc
Q 002877 609 QIMVLFLRVFACR--SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKV 686 (872)
Q Consensus 609 ~l~~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 686 (872)
.++...-+.-.+. +.+.--..+.+++.-..++|+.+.. +++-..+..+-...++++|...-.++|-+..+-++.
T Consensus 600 ~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~---eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm- 675 (881)
T COG5110 600 SLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGS---EMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM- 675 (881)
T ss_pred HHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhH---HHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch-
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHh-hccchhhhHHHH
Q 002877 687 LPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALA-IGVHFEKYVPHA 736 (872)
Q Consensus 687 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~i 736 (872)
+++..|-+...+. +.++..+++.++|-++.. ....+.+.+.+.
T Consensus 676 -----~vfDtL~r~shd~--dl~v~~ntIfamGLiGAGT~NaRlaqlLrQl 719 (881)
T COG5110 676 -----NVFDTLERSSHDG--DLNVIINTIFAMGLIGAGTLNARLAQLLRQL 719 (881)
T ss_pred -----HHHHHHHHhcccc--chhHHHHHHHHhhccccCcchHHHHHHHHHH
No 349
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=55.35 E-value=1.4e+02 Score=29.31 Aligned_cols=140 Identities=10% Similarity=0.012 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhhccC--ccccchhhHHH-HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 002877 150 KQATLETLGYVCEEIS--HQDLVQDEVNA-VLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVV 226 (872)
Q Consensus 150 r~~al~~l~~l~~~~~--~~~l~~~~~~~-l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 226 (872)
.-.++..|+.++..-+ ...+ ..+.+- +.|.+ +......+-..+|.+++..++.++..-+.+.-.---...+++..
T Consensus 67 VcnaLaLlQ~vAshpetr~~Fl-~a~iplyLyPfL-~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 67 VCNALALLQCVASHPETRMPFL-KAHIPLYLYPFL-NTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHH-TTTHHHHH-HTTGGGGGHHHH-H----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHcChHHHHHHH-HcCchhhehhhh-hccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 3456666666666421 1112 223333 33333 33333224578999999999998752111100000011266777
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHHhh---------hhhhHHhHHHHHHHHHH-HhcCCChHHHHHHHHhHhHHhHh
Q 002877 227 CETAKSKEVEIRQAAFECLVSIASTY---------YEVLEPYMQTLFELTSN-AVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
...++.+++-.+..|..++..++... ++.|. .+..++..++. ...++++.+-...+.+...++++
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~-av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFF-AVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHH-HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 77777777888888888888887542 12221 12233333332 33456666667777777777775
No 350
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.22 E-value=1.2e+02 Score=30.39 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 224 KVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
.-+..++.+.++.+|+.|++.+..+...-.+.+..+-...++-+.....+.++ ...|...+.+++..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 34566777889999999999988887664444444444555555555555444 44555556666654
No 351
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=52.69 E-value=3e+02 Score=28.84 Aligned_cols=118 Identities=14% Similarity=0.214 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 002877 191 SAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNA 270 (872)
Q Consensus 191 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 270 (872)
..++......+|..++.|-. .+++. ..+.++..+...+.+. ..+.++..+.-.+-..|..+.+.++.++..+-..
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~-~~~k~-~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i 284 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHS-HFSKQ-EQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKI 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCHh-HHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 46788888999998887633 34432 2345777777766542 2344555555555555777777777776655332
Q ss_pred hcCCChHHHHHHHHhHhHHhHhh-hhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHH
Q 002877 271 VKGDEEAVALQAVEFWSSICDEE-IELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETL 330 (872)
Q Consensus 271 ~~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l 330 (872)
. ....++...+||+..+++.+ .-. .+|..+-+..++.+++..+
T Consensus 285 ~--tt~~~Ai~ILEFLs~L~~lP~~ly---------------~nF~~~~y~~VF~I~l~Y~ 328 (356)
T PF03542_consen 285 S--TTPNMAIHILEFLSSLSRLPNHLY---------------SNFTEDEYKRVFAIALPYT 328 (356)
T ss_pred c--cchhhHHHHHHHHHHHhhCcHHHh---------------cCCCHHHHHHHHHHHhhcc
Confidence 2 34557888999999999864 211 1345555566777776554
No 352
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=52.47 E-value=1.3e+02 Score=26.98 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHh-hhHHHhhhHHHHHHHHhhhcccc---hHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 002877 627 EEAMLAIGALAYAT-GPEFAKYMPEFYQYLQMGLQNSE---EYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALS 702 (872)
Q Consensus 627 ~~a~~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 702 (872)
..+..++-.++-.. ...|.|.+-+++..-...+...+ ...-..+-..++..+....+.-+.||...+++.....|+
T Consensus 39 ~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~ 118 (153)
T PF08146_consen 39 SSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLK 118 (153)
T ss_pred HHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333 35788888888877765554322 122234445566777777777789999999988888886
Q ss_pred CC
Q 002877 703 NS 704 (872)
Q Consensus 703 ~~ 704 (872)
..
T Consensus 119 ~~ 120 (153)
T PF08146_consen 119 QF 120 (153)
T ss_pred Hh
Confidence 43
No 353
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=51.74 E-value=57 Score=30.72 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=46.1
Q ss_pred HHHHhhccCCC-cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhcc
Q 002877 371 PFVEANIVKSD-WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 371 ~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
+.+.....|++ |..|-+....+..+.. ......++..+-..+.|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 66777777776 5555444444433333 12466778888888899999999999999999987644
No 354
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=51.56 E-value=29 Score=20.55 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.9
Q ss_pred cchHHHHHHHHHHhh
Q 002877 382 WRCREAATYAFGSVL 396 (872)
Q Consensus 382 ~~~r~aal~~l~~i~ 396 (872)
|.+|+.+..+|+.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999874
No 355
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=50.53 E-value=3.2e+02 Score=28.66 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhhhcc-cchHhHHHHHHHHHHHHHHHhc
Q 002877 647 YMPEFYQYLQMGLQN-SEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 647 ~l~~i~~~l~~~l~~-~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
.++.+.|.+++++-- .|.+.+|..|...+..+.+...
T Consensus 253 ~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 253 LLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 344455555544432 2356688888888888887765
No 356
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=50.35 E-value=1.2e+02 Score=27.32 Aligned_cols=62 Identities=8% Similarity=0.105 Sum_probs=39.6
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhcc
Q 002877 664 EYQVCAITVGVVGDVCRALDDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGV 727 (872)
Q Consensus 664 ~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~ 727 (872)
+..+...++..|..++.+....+.... .--++.|+..|+.+ +.++..+++..+..+....++
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFLKADD 135 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcCCh
Confidence 456888888888888765432111111 12256777778776 777777877777777666554
No 357
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=49.85 E-value=37 Score=22.95 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHh
Q 002877 88 SYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASI 122 (872)
Q Consensus 88 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~ 122 (872)
...+++|+.+++.|..+++..|..+..+|+.+.+-
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 35678999999999988888888888888887654
No 358
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=49.77 E-value=2.5e+02 Score=27.19 Aligned_cols=143 Identities=10% Similarity=0.019 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhhccC--ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 002877 149 LKQATLETLGYVCEEIS--HQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVV 226 (872)
Q Consensus 149 ~r~~al~~l~~l~~~~~--~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 226 (872)
..-.++..|+.++.+-+ .-.+ ..+++-.+=.++.....+.+...+|.+++..++.++..-+.+....--...+++..
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL-~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFL-RAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHH-HccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 34456666655555421 1112 23333333223333222336788999999999998763222211110112256667
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHHhh---------hhhhHHhHHHHHH-HHHHHhcCCChHHHHHHHHhHhHHhHhh
Q 002877 227 CETAKSKEVEIRQAAFECLVSIASTY---------YEVLEPYMQTLFE-LTSNAVKGDEEAVALQAVEFWSSICDEE 293 (872)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~al~~l~~l~~~~ 293 (872)
...+..+.+..+..|..++..++... .+.|. .+..++. +.....+.+...+...++.+...++++.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~-av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFS-AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 77777788888888888888876432 11111 1222333 2233344566777777788887777753
No 359
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=48.78 E-value=4e+02 Score=29.21 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHH
Q 002877 714 ILSCFGDIALAIGVHFEKYVPHALQMMQEA 743 (872)
Q Consensus 714 ~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 743 (872)
.+..++.+...-++.+.|++|.+++.|.+.
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~ 211 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQL 211 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCC
Confidence 334445555555666777777777777653
No 360
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=48.02 E-value=1.7e+02 Score=30.88 Aligned_cols=152 Identities=18% Similarity=0.111 Sum_probs=77.0
Q ss_pred HHHHHhhcCCC--hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchh
Q 002877 95 DLLLRTLASPV--PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQD 172 (872)
Q Consensus 95 ~~Ll~~l~~~~--~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~ 172 (872)
+.|++.+..++ ..||-.++.++..+...+--+..-..-+..++...+.. ..++.....+.++..+++.....-. .-
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~-e~~e~aR~~~~il~~mFKHSeet~~-~L 260 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKER-EPVELARSVAGILEHMFKHSEETCQ-RL 260 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhc-CcHHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence 35667777775 57899999999988755411100000123333333332 1345556677777777665420000 00
Q ss_pred hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Q 002877 173 EVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAS 250 (872)
Q Consensus 173 ~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (872)
.-...+..++-.+.. .++.+-..+.-+|++++-+........+..+..-+.++-+..+.|+-.|..+|-....++.
T Consensus 261 vaa~~lD~vl~~~rR--t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRR--TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred Hhhcccchheeeccc--CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 111122233334443 2344444444566666544333333333223344455555556677778888877777665
No 361
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=47.77 E-value=23 Score=20.53 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 002877 426 VKDTTAWTLSRIF 438 (872)
Q Consensus 426 vr~~a~~~l~~l~ 438 (872)
||..+.++||++.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 7899999999876
No 362
>PF14961 BROMI: Broad-minded protein
Probab=46.91 E-value=3.7e+02 Score=32.85 Aligned_cols=135 Identities=12% Similarity=0.096 Sum_probs=79.3
Q ss_pred hHHHHHHHHhhccCCccH-HHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Q 002877 130 PELIRSLLNNMTQQDSLA-ALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDF 208 (872)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~-~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 208 (872)
++=+..+.+.+..+ +| ++|..|++.|....- +++++.+.++.+...+..+|.| ++..+...+++..-.....
T Consensus 160 qe~lq~i~d~ld~~--~P~evR~eAlq~Lc~~p~---SDVls~E~W~~L~~~L~~~LsD--pD~~is~~~L~f~Ak~fss 232 (1296)
T PF14961_consen 160 QEQLQLIADKLDPG--QPKEVRLEALQILCSAPP---SDVLSCESWSVLRENLTDALSD--PDPEISDASLRFHAKMFSS 232 (1296)
T ss_pred HHHHHHHHHhcCCC--CchHHHHHHHHHHhcCCh---hhccccccHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhccC
Confidence 34456666666654 44 478777777754433 4666577899999999999999 7889999999988776543
Q ss_pred HHhhhhhhhHHHHHHHHHHH--------------hhc--CCcHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHH
Q 002877 209 ALTNFQNEMERNYIMKVVCE--------------TAK--SKEVEIRQAAFECLVSIASTYYE----VLEPYMQTLFELTS 268 (872)
Q Consensus 209 ~~~~~~~~~~~~~ll~~l~~--------------~~~--~~~~~~~~~~~~~l~~l~~~~~~----~~~~~l~~l~~~~~ 268 (872)
-+-++..+.... +++.+.. .+. .++...-...++.+..+-...|+ +-.++++.+++..+
T Consensus 233 Spl~~trEiYts-L~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTL 311 (1296)
T PF14961_consen 233 SPLNMTREIYTS-LANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTL 311 (1296)
T ss_pred CchhhhHHHHHH-HHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHH
Confidence 332333222211 2222211 111 11222233455556555544444 33467778888666
Q ss_pred HHhc
Q 002877 269 NAVK 272 (872)
Q Consensus 269 ~~~~ 272 (872)
..+.
T Consensus 312 sLLs 315 (1296)
T PF14961_consen 312 SLLS 315 (1296)
T ss_pred HHhc
Confidence 6554
No 363
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.70 E-value=2.4e+02 Score=30.63 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhccc-chHhHHHHHHHHHHHHHHHhcC
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNS-EEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
...+..|.+.+.+..+.+.-.|+.+|..++++||..|...+ ..+++-+....... -+..||..++.+|......++.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 36777888888888889999999999999999999876433 36777777777765 5567999999999998888763
Q ss_pred --CccccHHHHHHHHH
Q 002877 685 --KVLPFCDGIMSLLL 698 (872)
Q Consensus 685 --~~~~~~~~i~~~l~ 698 (872)
...+.+..+...+.
T Consensus 117 ~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 117 PDGYLPDYYQIYDELR 132 (470)
T ss_pred CCCcchhHHHHHHHHH
Confidence 33333334444333
No 364
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=44.21 E-value=2.4e+02 Score=25.40 Aligned_cols=121 Identities=14% Similarity=0.224 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCC
Q 002877 111 TSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEH 190 (872)
Q Consensus 111 ~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~ 190 (872)
....++..+++.... .-+++++.+.+.+-+. ..........+|+.++... |-.+ .++...+- .++..+.. -
T Consensus 37 LG~~IL~~~fk~h~~--~r~~Ile~l~~rI~~~--s~~~~~~~idlL~~lv~~~-p~~v-le~~~~l~-~~ld~l~~--l 107 (158)
T PF14676_consen 37 LGIQILLELFKVHEM--IRSEILEQLLNRIVTK--SSSPSSQYIDLLSELVRKA-PLTV-LECSSKLK-ELLDYLSF--L 107 (158)
T ss_dssp HHHHHHHHHHHH-GG--GHHHHHHHHHHHHHH----SS--HHHHHHHHHHHHH--HHHH-S-S-HHHH-GGGGGTTT--S
T ss_pred HHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHC-hHHH-HHHHHHHH-HHHHHHHh--C
Confidence 344455555543311 3344555555555433 1111112356666666654 2222 22222222 12222222 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 002877 191 SAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLV 246 (872)
Q Consensus 191 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~ 246 (872)
+.++...-++++..++. .. ...++.++-++.+.+-+.+.+.|..|...+.
T Consensus 108 p~~~a~~ll~Al~PLi~---~s---~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 108 PGDVAIGLLRALLPLIK---FS---PSLRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp -HHHHHHHHHHHHHHHT---T----HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh---cC---HHHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 34554444555444432 11 1234567788888888888898988876653
No 365
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=44.00 E-value=4.3e+02 Score=28.18 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=79.1
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHH-HHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHH
Q 002877 506 IAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAEL-LPAIMGRLGQTLELQIVSSDDREKQGDLQASLCG 584 (872)
Q Consensus 506 l~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (872)
++.|++.++.++ ....||..+...+..+..... . +++..+ +..++.. .+. .+-.++...+..
T Consensus 182 lD~Llrmf~aPn-~et~vRve~~rlLEq~~~aeN-~---d~va~~~~~~Il~l-AK~-----------~e~~e~aR~~~~ 244 (832)
T KOG3678|consen 182 LDLLLRMFQAPN-LETSVRVEAARLLEQILVAEN-R---DRVARIGLGVILNL-AKE-----------REPVELARSVAG 244 (832)
T ss_pred HHHHHHHHhCCc-hhHHHHHHHHHHHHHHHhhhh-h---hHHhhccchhhhhh-hhh-----------cCcHHHHHHHHH
Confidence 445666666544 334678888888877766543 1 222211 1111111 110 112345556667
Q ss_pred HHHHHHHHcCCCccchhhchhh-HHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHh-hhH-HHHHHHHhhhcc
Q 002877 585 VLQVIIQKFSSTDATKSFILQT-ADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAK-YMP-EFYQYLQMGLQN 661 (872)
Q Consensus 585 ~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~l~-~i~~~l~~~l~~ 661 (872)
.+.++.+.... ..... ....++.++-.+...++.+-..+..++++++...+..... .++ .+-..|+....+
T Consensus 245 il~~mFKHSee------t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s 318 (832)
T KOG3678|consen 245 ILEHMFKHSEE------TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS 318 (832)
T ss_pred HHHHHhhhhHH------HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc
Confidence 77776655433 22111 1234444555556667777777777888887665543332 222 222333333233
Q ss_pred cchHhHHHHHHHHHHHHHHHh
Q 002877 662 SEEYQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 662 ~~~~~v~~~a~~~l~~l~~~~ 682 (872)
. +.-.|..||.++..++..-
T Consensus 319 k-Del~R~~AClAV~vlat~K 338 (832)
T KOG3678|consen 319 K-DELLRLHACLAVAVLATNK 338 (832)
T ss_pred h-HHHHHHHHHHHHhhhhhhh
Confidence 3 3347888888888877654
No 366
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=43.94 E-value=1.3e+02 Score=28.44 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=50.7
Q ss_pred HHHHhhcC-CcchhchHHHHHhhccCCC-cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHH
Q 002877 355 GLVARTVG-DEVVPLVMPFVEANIVKSD-WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAW 432 (872)
Q Consensus 355 ~~l~~~~~-~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~ 432 (872)
+.++..+. ....+.+++......++.+ |..|-+.+.++...-+.. ....+++.+-..+.|.+..|+.+.-|
T Consensus 104 D~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~-------~~~~if~i~E~~l~d~e~fV~KAigW 176 (222)
T COG4912 104 DTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL-------DLLEIFEIIELLLGDKEFFVQKAIGW 176 (222)
T ss_pred HHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc-------chhHHHHHHHHHccChHHHHHHHHHH
Confidence 33444432 3445556666644444444 555544444444433322 23368888888999999999999999
Q ss_pred HHHHHHhhcc
Q 002877 433 TLSRIFELLH 442 (872)
Q Consensus 433 ~l~~l~~~~~ 442 (872)
+|.+++.+.+
T Consensus 177 aLrq~~k~~~ 186 (222)
T COG4912 177 ALRQIGKHSN 186 (222)
T ss_pred HHHHHHhhch
Confidence 9999998444
No 367
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=42.40 E-value=3.4e+02 Score=26.57 Aligned_cols=131 Identities=16% Similarity=0.204 Sum_probs=70.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhccCCCCCccccC---cccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCC
Q 002877 419 MRDENNHVKDTTAWTLSRIFELLHCPATGFSVIS---PENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPS 494 (872)
Q Consensus 419 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~ 494 (872)
+.|+++.|...+..+.+.+....-...- ..... ...+..+=..++..+.+ ++.||..|...+..++.........
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~-~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWIC-VNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 5678888888888777765443211000 00011 12223344455555666 8999999999888887665421000
Q ss_pred -------C------------CC-----chhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 002877 495 -------S------------SL-----LSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAEL 550 (872)
Q Consensus 495 -------~------------~~-----l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l 550 (872)
+ .. +..-...++..|+..+.... -...+-.+.+.++..+++.-| .+...+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~-i~~~~~~a~insL~~Iak~RP-----~~~~~I 154 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPH-ISSPLLTAIINSLSNIAKQRP-----QFMSRI 154 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHHHHHHHHHSG-----GGHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHhh-----HHHHHH
Confidence 0 00 11113467777887776433 134456788888888888776 334444
Q ss_pred HHHHHH
Q 002877 551 LPAIMG 556 (872)
Q Consensus 551 ~~~l~~ 556 (872)
++.+..
T Consensus 155 l~~ll~ 160 (239)
T PF11935_consen 155 LPALLS 160 (239)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 368
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=42.36 E-value=35 Score=31.96 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=48.2
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 002877 806 HRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMI 866 (872)
Q Consensus 806 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~ 866 (872)
...|-+|-+++++||.++++-.+...+......+|+-.++- ++.+++-.+..|++-.|.|
T Consensus 157 ~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI-me~gSElSktvaifI~qki 216 (315)
T COG5209 157 SKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI-MELGSELSKTVAIFIFQKI 216 (315)
T ss_pred CccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH-HHhhhHHHHHHHHHHHHHH
Confidence 36789999999999999999888766655666677777775 8888898998888876654
No 369
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=41.81 E-value=49 Score=35.57 Aligned_cols=136 Identities=10% Similarity=0.035 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhcCCCccchhHh-HH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHH
Q 002877 386 EAATYAFGSVLEGPTIDKLAPL-VH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVL 463 (872)
Q Consensus 386 ~aal~~l~~i~~~~~~~~~~~~-l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 463 (872)
-|++.+|-+++.... .+..- .+ .+...+++.|++|+-++...+.-.+..+.--+.. ....-.-..++..+
T Consensus 407 ~a~~l~LkS~SrSV~--~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn------L~~~fL~~~iIdvl 478 (743)
T COG5369 407 VAIVLFLKSMSRSVT--FLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN------LGAGFLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHhhHHHH--HHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccc------hHHHHHHhhHHHHH
Confidence 355666666655431 11111 11 6778899999998877776665554443322221 11122235677888
Q ss_pred HHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHh
Q 002877 464 LESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVR 536 (872)
Q Consensus 464 ~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~ 536 (872)
...+.. +...|....|.+..+.-++.. ...+.+....-+..++...+. +...|++..+..+..+.-
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmyncq~----~ekf~~Lakig~~kvl~~~ND---pc~~vq~q~lQilrNftc 545 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNCQK----NEKFKFLAKIGVEKVLSYTND---PCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcCcc----hhhhhhHHhcCHHHHHHHhcC---cccccHHHHHHHHHhccc
Confidence 887776 778889999999988877642 223344444446666666662 346667777766665543
No 370
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=41.73 E-value=6.4e+02 Score=29.57 Aligned_cols=144 Identities=11% Similarity=0.033 Sum_probs=82.8
Q ss_pred CCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHH
Q 002877 379 KSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQR 458 (872)
Q Consensus 379 ~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 458 (872)
+..+..|..+-++..+.... ..+...-.-+...+.+-+......-...|+.+..++...+.+ ....+...
T Consensus 28 e~gpn~s~m~kL~~YAasnp---~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~e-------q~n~F~ss 97 (819)
T KOG1877|consen 28 EDGPNKSKMEKLTFYAASNP---SKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKE-------QINLFVSS 97 (819)
T ss_pred CCCcccccHHHHHHHHhhCh---hhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhh-------hhHHHHHH
Confidence 44566777777777776553 222221112233444444455555556777888888887776 44566677
Q ss_pred HHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCc--chhHHHHHHHHHHHHH
Q 002877 459 ILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVG--GSKLRSAAYETLNEVV 535 (872)
Q Consensus 459 ~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~--~~~vr~~a~~al~~l~ 535 (872)
++..+.+.+.+ ++..+..++.++..|+...++ ++.....++..++.+.+.....+++ ...+|.+-+.+|..++
T Consensus 98 fL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d----~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v 173 (819)
T KOG1877|consen 98 FLRMVQKLLESNNDEMQILGTNSFVKFANIEED----GPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVV 173 (819)
T ss_pred HHHHHHHHHhcCCCceeeehhhHHHHHHhhccc----CchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHH
Confidence 77777777777 888888899999888866431 2222223455566655555432211 1234445455555444
Q ss_pred h
Q 002877 536 R 536 (872)
Q Consensus 536 ~ 536 (872)
.
T Consensus 174 ~ 174 (819)
T KOG1877|consen 174 W 174 (819)
T ss_pred H
Confidence 3
No 371
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=40.14 E-value=5.9e+02 Score=28.72 Aligned_cols=202 Identities=11% Similarity=0.120 Sum_probs=98.8
Q ss_pred cCChHHHHHHHHHHHHhhcCCCh------------hHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHH
Q 002877 84 AIDISYKSQVKDLLLRTLASPVP------------EARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQ 151 (872)
Q Consensus 84 ~l~~~~~~~i~~~Ll~~l~~~~~------------~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~ 151 (872)
.++++.-..+.+..+..|...++ .+-...|+++|.+.+..+.. --.-++..|-+..++.+......+
T Consensus 27 ~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~s-VsdRF~~eL~~~~~~~~~~~~~~~ 105 (552)
T PF14222_consen 27 SLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVS-VSDRFIAELEKLRKDSNDAESKIE 105 (552)
T ss_pred CCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChH-HHHHHHHHHHHhcccCCchHHHHH
Confidence 35555555555555555543222 23344566666666544331 223355555555432200111222
Q ss_pred HHHHHHHHhhhccCc-cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-------HH
Q 002877 152 ATLETLGYVCEEISH-QDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNY-------IM 223 (872)
Q Consensus 152 ~al~~l~~l~~~~~~-~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~-------ll 223 (872)
..+..+..+--...| +.+ +..-+++..+.+.....+...+++.+-.+.|..++.-+......+...+. +.
T Consensus 106 ~li~GMr~lrlk~~p~e~~--e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~ 183 (552)
T PF14222_consen 106 LLIMGMRYLRLKMYPEEAF--EESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIY 183 (552)
T ss_pred HHHhhcceeeecCCCHHHH--HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHH
Confidence 333333333222212 222 23344455555555442135579999999999887654433222221111 22
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHhh-hhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 224 KVVCETAKSKEVEIRQAAFECLVSIASTY-YEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
+.+.+... .+..-..++-....++-.. ++.|..+.. .+++....-+++. +.|..+++.+..+.-.
T Consensus 184 ~~~~~~~~--K~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWv 250 (552)
T PF14222_consen 184 PRAAKMMS--KPKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWV 250 (552)
T ss_pred HHHHHHHh--CcchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHH
Confidence 23333332 2344445666666666544 455666666 5777666555554 6677777766666543
No 372
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=39.91 E-value=6e+02 Score=28.70 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=33.2
Q ss_pred hchhhHHHHHHHHHHHHc---cC-ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 002877 602 FILQTADQIMVLFLRVFA---CR-SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQ 656 (872)
Q Consensus 602 ~~~~~~~~l~~~l~~~l~---~~-~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 656 (872)
.+.|.+.++++..+.++. .+ -..+|-.++..|..++...|. |.|..+.++..+.
T Consensus 417 ~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~ 474 (661)
T KOG2256|consen 417 QLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLK 474 (661)
T ss_pred hhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHH
Confidence 666665555555555443 33 457888888888888877664 4454444444444
No 373
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=39.86 E-value=6e+02 Score=28.70 Aligned_cols=59 Identities=12% Similarity=0.299 Sum_probs=38.3
Q ss_pred CCccccHHHHHHHHHHHhc---CCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHH
Q 002877 684 DKVLPFCDGIMSLLLNALS---NSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAA 744 (872)
Q Consensus 684 ~~~~~~~~~i~~~l~~~l~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~ 744 (872)
..+.|.+..+++.+..+.. .+. ...+|--++..+-.|+...| .|.|..+.++..+-...
T Consensus 416 s~lq~LvYpLvQvi~GvirLipT~q-y~PLRlhcir~Li~Ls~ssg-~fIPi~~ll~Eml~~~~ 477 (661)
T KOG2256|consen 416 SQLQPLVYPLVQVILGVIRLIPTPQ-YYPLRLHCIRSLISLSRSSG-TFIPLSPLLVEMLKSVT 477 (661)
T ss_pred hhhhhhhhHHHHHHHHHhhhcCccc-chhHHHHHHHHHHHHHhhcC-ceeecHHHHHHHHHHhh
Confidence 3455555555555554443 332 45678888999999988777 47777777766666554
No 374
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=39.84 E-value=1.1e+02 Score=25.15 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhcCCCccchhHhHH--hHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhcc
Q 002877 385 REAATYAFGSVLEGPTIDKLAPLVH--AGFDFLLNAM--RDENNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 385 r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
|...+..++.++... ......+. .-+|.+++.. ++.+|.+|+-|.+++-.+++..+
T Consensus 3 K~~lvrlianl~~~~--~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKN--KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 344566777777654 23333333 4477777775 68899999999999999886554
No 375
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=39.45 E-value=3.8e+02 Score=26.25 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhh-------hhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh--------
Q 002877 190 HSAEVRLAATRALYNALDFALTNF-------QNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYE-------- 254 (872)
Q Consensus 190 ~~~~vr~~al~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------- 254 (872)
+++.|.+.++.|..++....-... ..|.....+-..+.+...+.++.+|..+++++..++-....
T Consensus 5 ~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~ 84 (239)
T PF11935_consen 5 EDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPR 84 (239)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccc
Confidence 578999999999988776432221 11221223555677778888999999999999988754210
Q ss_pred ----------------------hhHHhHHHHHHHHHHHhcCCC--hHHHHHHHHhHhHHhHhh
Q 002877 255 ----------------------VLEPYMQTLFELTSNAVKGDE--EAVALQAVEFWSSICDEE 293 (872)
Q Consensus 255 ----------------------~~~~~l~~l~~~~~~~~~~~~--~~~~~~al~~l~~l~~~~ 293 (872)
.+...-..++..++..+.++. ..+-..++..|..+++..
T Consensus 85 ~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~R 147 (239)
T PF11935_consen 85 RGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQR 147 (239)
T ss_dssp GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHS
T ss_pred cccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh
Confidence 111112246777777776643 556667778888888763
No 376
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=37.66 E-value=1.7e+02 Score=24.57 Aligned_cols=85 Identities=14% Similarity=0.291 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC---CccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 002877 647 YMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD---KVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 647 ~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
|+.+++..+.. ++++++-...|+.....+++.-.. ++..+...++..|+.+ ++.-...+.-+.-..|+-.++.
T Consensus 4 YlrDll~~L~~---~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L-~~~f~~~~Fe~~R~~alval~v 79 (114)
T PF10193_consen 4 YLRDLLEYLRS---DDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHL-QNKFDIENFEELRQNALVALVV 79 (114)
T ss_dssp -HHHHHHHHT---------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH----TT--TTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHhc---CcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhc-cccCCccCHHHHHHHHHHHHHH
Confidence 55556655542 222466677888888888876544 8888888888888874 4432135555666677777777
Q ss_pred hhccchhhhHHH
Q 002877 724 AIGVHFEKYVPH 735 (872)
Q Consensus 724 ~~~~~~~~~l~~ 735 (872)
..+....+|+-.
T Consensus 80 ~~P~~~~~~L~~ 91 (114)
T PF10193_consen 80 AAPEKVAPYLTE 91 (114)
T ss_dssp HSGGGHHH-HHH
T ss_pred HhhHHHHHHHHH
Confidence 777777766543
No 377
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.36 E-value=7e+02 Score=28.80 Aligned_cols=226 Identities=14% Similarity=0.148 Sum_probs=115.4
Q ss_pred hhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHH
Q 002877 404 LAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIY 482 (872)
Q Consensus 404 ~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~ 482 (872)
++......+..|...-.|+-+.|+..++.++..+...-+ +.-..++..++..+.| +.++...|.+.|.
T Consensus 298 LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kP-----------EqE~~LL~~lVNKlGDpqnKiaskAsylL~ 366 (988)
T KOG2038|consen 298 LKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKP-----------EQENNLLVLLVNKLGDPQNKIASKASYLLE 366 (988)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCc-----------HHHHHHHHHHHHhcCCcchhhhhhHHHHHH
Confidence 344455666677777789999999999999887765444 3556788888889998 7888888888887
Q ss_pred HHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHH
Q 002877 483 YLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTL 562 (872)
Q Consensus 483 ~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 562 (872)
.+.... |. +.-. ++..+-..+-++. -+..-.-.+...|+.++-... -......++..-+..+...+
T Consensus 367 ~L~~~H------Pn-MK~V---vi~EIer~~FRpn-~~~ra~Yyav~fLnQ~~Lshk---e~dvAnrLi~iYF~lFk~l~ 432 (988)
T KOG2038|consen 367 GLLAKH------PN-MKIV---VIDEIERLAFRPN-VSERAHYYAVIFLNQMKLSHK---ESDVANRLISIYFSLFKTLV 432 (988)
T ss_pred HHHhhC------Cc-ceee---hHHHHHHHHcccC-ccccceeehhhhhhhhHhccc---hHHHHHHHHHHHHHHHHHHH
Confidence 776553 22 2211 2222222222222 112113344455555543322 12344555555555554443
Q ss_pred hhhhcC-------c------chhhhHHHHHH-----HHHHHHHHHHHHcCCC-ccchhhc-hhhHHHHHHHHHHHHccCC
Q 002877 563 ELQIVS-------S------DDREKQGDLQA-----SLCGVLQVIIQKFSST-DATKSFI-LQTADQIMVLFLRVFACRS 622 (872)
Q Consensus 563 ~~~~~~-------~------~~~~~~~~~~~-----~~~~~l~~l~~~~~~~-~~~~~~~-~~~~~~l~~~l~~~l~~~~ 622 (872)
...... . .-+....++.. .-...|+.++.++... +.. .. ..-+..=++.|+.+.++.+
T Consensus 433 ~~~~~d~~k~~k~~~k~kks~k~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfa--q~~ddk~~~~~~tLFkl~HssN 510 (988)
T KOG2038|consen 433 GKKDKDNRKDDKGAAKKKKSNKKDKKEEVSTESPIELNSRLLSALLTGVNRAFPFA--QTADDKLEEQMKTLFKLTHSSN 510 (988)
T ss_pred HhhhhhhhhcccchhhcccccccchhhhhcccchhhhhHHHHHHHHhcccccCCcc--cCchHHHHHHhHHHHHHHhhcc
Confidence 211000 0 00011111111 1112333343333220 000 00 1123345667777888777
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 002877 623 STVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQ 656 (872)
Q Consensus 623 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 656 (872)
..+.-.|+.+|-.+.....-.--.|+..++..|+
T Consensus 511 FNTsVQaLmLlfQvs~~~~~vSDRyY~aLY~kLL 544 (988)
T KOG2038|consen 511 FNTSVQALMLLFQVSKKNDYVSDRYYRALYRKLL 544 (988)
T ss_pred cchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 7777778888777654433333345555555443
No 378
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=37.20 E-value=6.5e+02 Score=28.33 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=46.6
Q ss_pred chhhhHHHHHHHHHhhc-C----CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCC
Q 002877 345 NISMAGGTCLGLVARTV-G----DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPT 400 (872)
Q Consensus 345 ~~r~~a~~~l~~l~~~~-~----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~ 400 (872)
.++-+..+.+..+++.+ + +.+.|.+...+...+.+.+|-.++-|+.+++.+++...
T Consensus 495 ~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 495 HVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred cchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 37888889999998775 2 34667777778888899999999999999999998764
No 379
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=36.78 E-value=2.8e+02 Score=30.48 Aligned_cols=75 Identities=8% Similarity=0.072 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcch------------hhhccCchHHHHHHHHHhcCCcHHHHHHH
Q 002877 792 QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNT------------KLLFKDSSFCNDFMSECLRSDDEQLKETA 859 (872)
Q Consensus 792 ~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~------------~~~~~~~~~v~~ll~~~~~~~~~~~~~~a 859 (872)
+.+++.+...++ +..+.++..+|..+|.+|+....... .....-+..|..|+..++.+.. ..+.
T Consensus 61 q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~---~s~l 136 (475)
T PF04499_consen 61 QNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG---GSSL 136 (475)
T ss_pred hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC---cchH
Confidence 445555555554 45677888888888888877654221 1112234456666666554322 4455
Q ss_pred HHHHHHHHHHh
Q 002877 860 GWTQGMINRVL 870 (872)
Q Consensus 860 ~~~~~~~~~~~ 870 (872)
..+++.+-++|
T Consensus 137 vn~v~IlieLI 147 (475)
T PF04499_consen 137 VNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHH
Confidence 56666666555
No 380
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=36.76 E-value=74 Score=21.52 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhh
Q 002877 90 KSQVKDLLLRTLASPVPEARHTSAQVIAKIASIE 123 (872)
Q Consensus 90 ~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~ 123 (872)
.+++|+.+++.|...+.. |..+..+++.+.+-+
T Consensus 4 ~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 4 FEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred HHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 468999999999887755 888888887776543
No 381
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=36.38 E-value=2.2e+02 Score=23.97 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHH
Q 002877 470 APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQII 547 (872)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~ 547 (872)
++...+.|......++..-. .. +..+..+...++..++..=++++.++. ...-..|+..++-..| ..+.+|+
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~--~f-g~el~~~a~eL~~~Ll~L~~~f~~~~F--e~~R~~alval~v~~P-~~~~~~L 89 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKP--DF-GTELSEYAEELLKALLHLQNKFDIENF--EELRQNALVALVVAAP-EKVAPYL 89 (114)
T ss_dssp --S-SHHHHHHHHHHHHS--------SSHHHHHHHHHHHHHH---TT--TTT--THHHHHHHHHHHHHSG-GGHHH-H
T ss_pred CHHHHHHHHHHHHHHHhcCC--CC-cchHHHHHHHHHHHHhhccccCCccCH--HHHHHHHHHHHHHHhh-HHHHHHH
Confidence 45566777777777877641 01 348889999999999888776665554 2333556666666667 5555544
No 382
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=35.66 E-value=1.8e+02 Score=26.52 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=34.5
Q ss_pred hhhcCChHHHHHHHHHHHHhhcC--CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccC
Q 002877 81 QWLAIDISYKSQVKDLLLRTLAS--PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQ 143 (872)
Q Consensus 81 ~w~~l~~~~~~~i~~~Ll~~l~~--~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~ 143 (872)
.|..++++.- ++.|.. ++..||..|.+.+...- .+....++++|+|.++-+
T Consensus 72 ~W~~i~~~~a-------LeLL~~~f~~~~VR~yAV~~L~~~s-----d~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 72 KWAKIDIEDA-------LELLSPYFTNPVVRKYAVSRLKLAS-----DEELLLYLLQLVQALKYE 124 (166)
T ss_pred cCCCCCHHHH-------HHHcCccCCCHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHhc
Confidence 4776665432 344443 46889999999998732 236777888888888654
No 383
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=35.14 E-value=2.8e+02 Score=24.40 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=24.2
Q ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q 002877 4 EITQFLLAA-QSADANIRNEAEANLRQLQQQNLPGFLLSLSVELV 47 (872)
Q Consensus 4 ~~~~~l~~~-~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~ 47 (872)
++.+++..+ .++|+++|+.|-+.|-.|+......|-..|..++.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lld 61 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLD 61 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcC
Confidence 455555544 44467777777777777666433334444444443
No 384
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=34.40 E-value=1.1e+02 Score=24.40 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCC
Q 002877 625 VHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDK 685 (872)
Q Consensus 625 v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 685 (872)
.|..++..|++++.+.+-.+-++++.++..|.....+ ...++.++=.+++++-+...+.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~--~~~I~~tvk~tl~eFkrtH~D~ 63 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND--PQPIRTTVKKTLSEFKRTHQDT 63 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS---SSHHHHTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC--CchHHHHHHHHHHHHHHhCccc
Confidence 4667788899999999988889999999998887764 3348888888888887776654
No 385
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=34.11 E-value=4e+02 Score=24.98 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=73.0
Q ss_pred cchhhhHHHHHHHHHhhcCCc---chhchHHHHHhhccCC-----CcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHH
Q 002877 344 WNISMAGGTCLGLVARTVGDE---VVPLVMPFVEANIVKS-----DWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFL 415 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~-----~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l 415 (872)
..+|..|..++..+. ..+.. .+|. .+.+...+..+ +|..-....-.+..+... ..|-..++..+
T Consensus 21 DrvR~~A~~~l~~ll-~~~~~~~~~ip~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~------~~y~~~ll~Gl 92 (193)
T PF12612_consen 21 DRVREVAGKCLQRLL-HSQDPTIPHIPH-REELQDIFPSESEASLNWSSSSEYFPRLVKLLDL------PEYRYSLLSGL 92 (193)
T ss_pred HHHHHHHHHHHHHHh-cCCCccccCCCc-HHHHHHHcccccccccccCCHHHHHHHHHHHhcc------HHHHHHHHhHH
Confidence 479999999999988 33322 2332 33344433321 265433333333333221 23455666666
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHh
Q 002877 416 LNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 416 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~ 487 (872)
+-........+...+..+|-.+..... .....+..++..++..+.+ +.++-.-.+..+..+.+.
T Consensus 93 v~S~G~~tesl~~~s~~AL~~~~~~~~--------~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 93 VVSAGGLTESLVRASSAALLSYLRELS--------DSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HhcCCCCchhHHHHHHHHHHHHHHHhh--------cCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 666666777777777777777765332 2345667777777777765 555555666666666554
No 386
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=33.35 E-value=1.5e+02 Score=27.83 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=51.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 413 DFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 413 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
+.+..-..++++.+|+++..++..+... ..+...++..+...+.| +..|+.+..++|..+....
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 6677778999999999998888766543 13577888888888887 8889999999998888664
No 387
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=33.06 E-value=4.3e+02 Score=25.05 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHH
Q 002877 16 DANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKD 95 (872)
Q Consensus 16 ~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~ 95 (872)
.+.+|+-|.+...+.... .+....+..+..+ ..-+.|.+|..++...... .+++ ...
T Consensus 32 ~p~lr~lak~~~~~~~~~--~~~~~l~~~L~~~--~~~E~~~la~~il~~~~~~---------------~~~~----~~~ 88 (213)
T PF08713_consen 32 TPDLRKLAKDIYKELKLS--EELYELADELWES--GYREERYLALLILDKRRKK---------------LTEE----DLE 88 (213)
T ss_dssp HHHHHHHHHHHHHHHCTS--HHHHHHHHHHHCS--SCHHHHHHHHHHHHHCGGG-----------------HH----HHH
T ss_pred cHHHHHHHHHHHhhcccc--hHHHHHHHHHcCC--chHHHHHHHHHHhHHHhhh---------------hhHH----HHH
Confidence 356666666666666554 4554445555544 4688999999888543321 1221 112
Q ss_pred HHHHhhcC-CChhHhhHH-HHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhh
Q 002877 96 LLLRTLAS-PVPEARHTS-AQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDE 173 (872)
Q Consensus 96 ~Ll~~l~~-~~~~vr~~~-~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~ 173 (872)
.+-..+.. .+..+.-.+ ..+++.+.... +.+.+.+.+.+.|+ ++-.|..++.++..... ...
T Consensus 89 ~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~--~~w~rR~~~v~~~~~~~--------~~~ 152 (213)
T PF08713_consen 89 LLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEALELLEKWAKSD--NEWVRRAAIVMLLRYIR--------KED 152 (213)
T ss_dssp HHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCS--SHHHHHHHHHCTTTHGG--------GCH
T ss_pred HHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHH--------hcC
Confidence 22233333 355555444 55555554332 56788899999998 88888888766633332 345
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 002877 174 VNAVLTAVVQGMNLAEHSAEVRLAATRALYNA 205 (872)
Q Consensus 174 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~ 205 (872)
.+.++..+...+.+ +...||.+.--+|..+
T Consensus 153 ~~~~l~~~~~~~~d--~~~~vq~ai~w~L~~~ 182 (213)
T PF08713_consen 153 FDELLEIIEALLKD--EEYYVQKAIGWALREI 182 (213)
T ss_dssp HHHHHHHHHHCTTG--S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--chHHHHHHHHHHHHHH
Confidence 66777777778877 6778888777777664
No 388
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.32 E-value=7.2e+02 Score=27.40 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=15.5
Q ss_pred HHHHHHhhhcccchHhHHHHHHHHHHHHHHHh
Q 002877 651 FYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 651 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 682 (872)
+++.|...|..+.+.++..+|+.+|..+++..
T Consensus 63 LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 63 LIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44444444443334445555555555555443
No 389
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.82 E-value=2.1e+02 Score=32.22 Aligned_cols=82 Identities=12% Similarity=0.200 Sum_probs=59.2
Q ss_pred hhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc
Q 002877 647 YMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG 726 (872)
Q Consensus 647 ~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 726 (872)
|+.+.+..| ...++.++...|+..+..+++..+..+..+...++..++.+ ++..--...++.=..|+..++...+
T Consensus 509 YV~Dl~emL----~~~E~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhL-qn~f~~~~F~etq~~aiVa~~vT~p 583 (849)
T KOG4346|consen 509 YVADLFEML----LEKEKYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHL-QNNFGTPKFKETQVDAIVAACVTQP 583 (849)
T ss_pred HHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH-HHhcCccchhhhhHHHHHHHHhcCC
Confidence 444444444 45678889999999999999999988888988888888874 4332234455555777777777777
Q ss_pred cchhhhH
Q 002877 727 VHFEKYV 733 (872)
Q Consensus 727 ~~~~~~l 733 (872)
+...+|+
T Consensus 584 ~pcapyl 590 (849)
T KOG4346|consen 584 PPCAPYL 590 (849)
T ss_pred CcchhHH
Confidence 6666655
No 390
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=31.70 E-value=1e+03 Score=28.86 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=47.9
Q ss_pred CchHHHHHH-------HHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhH-HHHHHHHHHHHHh
Q 002877 753 EDEELIDYG-------NQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENV-TKAAVAVMGDLAD 824 (872)
Q Consensus 753 ~d~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~-~~~a~~~l~~l~~ 824 (872)
.|.|..+|. +.++.+.+.++..++.++....+.-+...++.+++-|...+...++...- |-+.+..|++|..
T Consensus 660 ~D~e~~~yli~~~~k~w~iky~~i~~lA~llaGL~~y~~~fvi~VID~vlE~Ir~glEin~~~~nQrriA~aryL~ELyn 739 (1128)
T KOG2051|consen 660 SDPEVKQYLISCFSKPWKIKYQNIHALASLLAGLSSYHPEFVIHVIDHVLEDIRPGLEINDYVSNQRRIALARYLGELYN 739 (1128)
T ss_pred ccHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHHhh
Confidence 455555553 45666677778888888776655556666788888888776543333333 4466888888866
Q ss_pred h
Q 002877 825 A 825 (872)
Q Consensus 825 ~ 825 (872)
.
T Consensus 740 f 740 (1128)
T KOG2051|consen 740 F 740 (1128)
T ss_pred h
Confidence 4
No 391
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=31.67 E-value=6.1e+02 Score=26.33 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=88.3
Q ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHhhhccCc----cccc-hhhHHHHHHHHHhccc-CCCCC-------HHHHHHHH
Q 002877 133 IRSLLNNMTQQDSLAALKQATLETLGYVCEEISH----QDLV-QDEVNAVLTAVVQGMN-LAEHS-------AEVRLAAT 199 (872)
Q Consensus 133 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~----~~l~-~~~~~~l~~~l~~~l~-~~~~~-------~~vr~~al 199 (872)
+..+...+.+. .......++..|..++.-.++ ++++ .+.....++.+...=. ..+.. ..+|...+
T Consensus 58 ~k~lyr~L~~~--~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSS--KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcC--cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 67788888887 667777899999988873321 1210 1111223333332111 10000 38999999
Q ss_pred HHHHHHHHHHHhhhhhhh-HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH------HHHHHHHHHhc
Q 002877 200 RALYNALDFALTNFQNEM-ERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ------TLFELTSNAVK 272 (872)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~------~l~~~~~~~~~ 272 (872)
+.+.+++...+.....+. ....++..++..+..+..++...+++.+.+-+-... .+....+ ..+..+.....
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHHHHHHHHhc
Confidence 999998765433222111 112247777777777778888888888776432222 2222111 22333333333
Q ss_pred CCCh----HHHHHHHHhHhHHhHh
Q 002877 273 GDEE----AVALQAVEFWSSICDE 292 (872)
Q Consensus 273 ~~~~----~~~~~al~~l~~l~~~ 292 (872)
..++ .++..+-+|+..+|..
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcC
Confidence 3444 7888889999998864
No 392
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.35 E-value=2.4e+02 Score=30.70 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH--HHHHHHHHHhhccCCCcchhHHHHHHHHH
Q 002877 455 NLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL--TSIIAELLRAADRTDVGGSKLRSAAYETL 531 (872)
Q Consensus 455 ~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~a~~al 531 (872)
.-..++.+|.+.++. +++++..|+..|..++++| +..+...+ ..+++.++....... ...+||..++..|
T Consensus 35 ~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNC------G~~fh~~Va~k~fL~emVk~~k~~~-~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 35 GPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNC------GYSFHLQVASKEFLNEMVKRPKNKP-RDLKVREKILELI 107 (470)
T ss_pred CcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHhccccCC-cchhHHHHHHHHH
Confidence 345788889999998 8899999999999999999 54444222 467777777776432 4567899999888
Q ss_pred HHHHhcCC
Q 002877 532 NEVVRCSN 539 (872)
Q Consensus 532 ~~l~~~~~ 539 (872)
..--...+
T Consensus 108 ~~W~~af~ 115 (470)
T KOG1087|consen 108 DTWQQAFC 115 (470)
T ss_pred HHHHHHcc
Confidence 87776665
No 393
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=30.11 E-value=1.9e+02 Score=28.33 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 002877 807 RDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMI 866 (872)
Q Consensus 807 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~ 866 (872)
..|-+|-+++++||.+++.-.+....-.+...+++--++- +..+++-.|..|+|-+..|
T Consensus 108 ~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~-me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 108 PFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI-MEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH-HHHS-HHHHHHHHHHHHHH
T ss_pred ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH-HHhccHHHHHHHHHHHHHH
Confidence 5789999999999999997776655444566677777775 7788899999998877654
No 394
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=29.44 E-value=2.3e+02 Score=25.38 Aligned_cols=55 Identities=15% Similarity=-0.010 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 002877 6 TQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLK 64 (872)
Q Consensus 6 ~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~ 64 (872)
..+|+...-.+.+..+++.+.|..+..-++... +++|...-.++.||+.|...|+
T Consensus 42 p~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~a----L~LL~~~~~~~~vr~yAv~~L~ 96 (152)
T cd00864 42 PKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDA----LELLSPKYPDPVVRQYAVRVLE 96 (152)
T ss_pred HHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHH----HHHcCCcCCCHHHHHHHHHHHH
Confidence 344444444566666666666655543322222 3334332234677777766664
No 395
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=28.78 E-value=2.7e+02 Score=28.55 Aligned_cols=196 Identities=10% Similarity=0.067 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHH-HhcCCccccHHHHHHHHHHH
Q 002877 622 SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCR-ALDDKVLPFCDGIMSLLLNA 700 (872)
Q Consensus 622 ~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~i~~~l~~~ 700 (872)
...+|.+|+.++.++.....+.-..++.+.+|.-.. ......... .++.+.. ..+....||-..+-..++..
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~----~~~~~~~~n---l~~~Ll~~~~~~~~dpy~~wfAa~il~h 123 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYAS----GNSDDPIAN---LLTALLDYDSDLSLDPYRCWFAAVILMH 123 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT------SS--SSSS----HHHHHT------SS-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC----CcccchhhH---HHHHHHHhhccccCCHHHHHHHHHHHHH
Confidence 567899999999888764443322333333322211 110001111 2222221 11113455555554444433
Q ss_pred hcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccc
Q 002877 701 LSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFK 780 (872)
Q Consensus 701 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 780 (872)
+-.+ +...|+.++.. .......|+.-...+..+...+...+.... +..++.. +..++....
T Consensus 124 ll~d--n~~~Ke~al~V-~~~~~~~ge~~vtliq~v~~lL~~~l~~~~------------d~ri~ig----yL~LL~~WL 184 (312)
T PF04869_consen 124 LLRD--NPEAKEQALRV-TEGDESSGEEPVTLIQTVSELLIASLRRNS------------DPRIQIG----YLMLLIVWL 184 (312)
T ss_dssp HHTT---HHHHHHHTT---EE--STTS--EEHHHHHHHHTTT----T--------------HHHHHH----HHHHHHHHH
T ss_pred HHhc--CHHHHHHHHcc-cCCCCCCCCCcccHHHHHHHHHHhhhhcCC------------chhHHHH----HHHHHHHHH
Confidence 3332 23334443333 122223455555566666666655443211 0122332 222222222
Q ss_pred hhhhhhhhhhH--HHHHHHHHHHh-cCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHH
Q 002877 781 SARAEVMMPYA--QHLLQFIELIF-KDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSE 846 (872)
Q Consensus 781 ~~~~~~~~~~~--~~il~~l~~~~-~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~ 846 (872)
-.++..+..|+ +..++.|.... ..+..+.-++..+.-+||.+......+. .+.+.-+.+++..
T Consensus 185 ~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s---~~~R~~l~~ll~~ 250 (312)
T PF04869_consen 185 FECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDS---PIPRATLHPLLTK 250 (312)
T ss_dssp TT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SC---CC-HHHHHHHHHH
T ss_pred hCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCC---CcCHHHHHHHHHH
Confidence 22344455555 22444444432 2233567788888889998877764432 3555566666644
No 396
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=28.53 E-value=1.1e+03 Score=28.29 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHh
Q 002877 622 SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQM 657 (872)
Q Consensus 622 ~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 657 (872)
+..+|..+..++.+++..|....-.-+-+++..+..
T Consensus 486 ~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~ 521 (1697)
T KOG3687|consen 486 DHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMA 521 (1697)
T ss_pred hhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHh
Confidence 557888889999999988876433333445555444
No 397
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=27.78 E-value=9.2e+02 Score=27.22 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCC---ccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh-hHHHhhhH-H
Q 002877 576 GDLQASLCGVLQVIIQKFSST---DATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG-PEFAKYMP-E 650 (872)
Q Consensus 576 ~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~-~ 650 (872)
.+++...|+++..+..-+... +.....+...+..+.+.+.+++..+ .....++.+...+.-..+ +.|..... .
T Consensus 145 ~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~--khw~~afPL~t~lLCvS~~e~F~~~W~~~ 222 (552)
T PF14222_consen 145 SDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKP--KHWNVAFPLVTTLLCVSPKEFFLSNWLPS 222 (552)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCc--chhhhHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 457777788777775544332 1222245566778888888888763 333446777766655444 45554444 4
Q ss_pred HHHHHHhhhcccchHhHHHHHHHHHHHHHHHh-----cCC---ccccHHHHHHHHHHHhcCCCCCCCCch-hHHHHHHHH
Q 002877 651 FYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL-----DDK---VLPFCDGIMSLLLNALSNSQLNRSVKP-PILSCFGDI 721 (872)
Q Consensus 651 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~-----~~~---~~~~~~~i~~~l~~~l~~~~~~~~~~~-~~~~~l~~l 721 (872)
++..+..-+++ ...|..++.++.++.=.+ .+. ....++.++..++..-.. ..-.+. ..+..+.++
T Consensus 223 ~i~~~~~klKd---k~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk---~~i~~D~~~~~~lv~i 296 (552)
T PF14222_consen 223 LIESLISKLKD---KETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKK---GWIPRDPEPLNPLVQI 296 (552)
T ss_pred HHHHHHhhcCC---hhhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCC---cccCCChhhhhhHHHH
Confidence 55555555554 357788888887776433 222 223344555544422111 233334 566677777
Q ss_pred HHhhccchhhhH
Q 002877 722 ALAIGVHFEKYV 733 (872)
Q Consensus 722 ~~~~~~~~~~~l 733 (872)
....|..-..|.
T Consensus 297 i~~I~~~~~df~ 308 (552)
T PF14222_consen 297 IRFIGYKHLDFA 308 (552)
T ss_pred HHhHhhhCcchH
Confidence 776664433333
No 398
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.92 E-value=1.2e+03 Score=28.38 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=82.3
Q ss_pred HHHHHHHh-----hcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhh
Q 002877 222 IMKVVCET-----AKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIEL 296 (872)
Q Consensus 222 ll~~l~~~-----~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~ 296 (872)
+++.++.. ..|-++++|..+++-|+..+..||..|.. ...+.++-=.+.|.+.+||..++..+..+.++....
T Consensus 283 mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~ 360 (1048)
T KOG2011|consen 283 MINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDK 360 (1048)
T ss_pred HHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccc
Confidence 44444443 35789999999999999999999988742 112222323457888999999998888887752210
Q ss_pred hhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhh
Q 002877 297 QEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEAN 376 (872)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~ 376 (872)
. ....|....-..++.+. ..+. ..+||..+...+... ..+..+-..-+..+...
T Consensus 361 ~------------~L~lFtsRFK~RIVeMa-----drd~-------~~~Vrav~L~~~~~~--~~~g~L~d~di~~Vy~L 414 (1048)
T KOG2011|consen 361 D------------KLELFTSRFKDRIVEMA-----DRDR-------NVSVRAVGLVLCLLL--SSSGLLSDKDILIVYSL 414 (1048)
T ss_pred h------------HHHHHHHHHHHHHHHHH-----hhhc-------chhHHHHHHHHHHHH--hcccccChhHHHHHHHH
Confidence 0 00123333333444432 1111 145665543333222 11222222334555666
Q ss_pred ccCCCcchHHHHHHHHHH
Q 002877 377 IVKSDWRCREAATYAFGS 394 (872)
Q Consensus 377 l~~~~~~~r~aal~~l~~ 394 (872)
+.+.+.+.+.+|...+..
T Consensus 415 i~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 415 IYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HhccCcchHHHHHHHHHH
Confidence 677788887777766554
No 399
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=26.87 E-value=1.2e+03 Score=28.37 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=56.0
Q ss_pred cchHHHHHHHHHHhhcCCC------ccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCccc
Q 002877 382 WRCREAATYAFGSVLEGPT------IDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPEN 455 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~------~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 455 (872)
|..++.+...+|...+... ...-...+..++..+-..++.... + ..+...+..++..+.. .+.
T Consensus 515 w~~~ysgw~lLG~~Le~~~~~~~~~d~~~~~~v~~ii~Ll~~l~~~~~~-~-~~~~~iL~~~S~~l~~---------~DI 583 (931)
T PF10487_consen 515 WEYEYSGWALLGRWLENLLKSYSELDSLQDERVAEIIDLLASLLSSDNS-I-EDSKEILEEASAYLDH---------SDI 583 (931)
T ss_pred EeecchHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHccCcc-h-hHHHHHHHHHhhcccc---------CcH
Confidence 8889999888887654321 011123355666666655533221 1 2344555555555543 245
Q ss_pred HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 456 LQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 456 ~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
+.-++..+-..+.. +-.+-.+|+..+..++..+
T Consensus 584 isvI~~ile~~L~~~~v~ll~scl~fL~aL~p~~ 617 (931)
T PF10487_consen 584 ISVIFDILERSLQSRNVELLTSCLRFLTALLPIF 617 (931)
T ss_pred HHHHHHHHHHHcccCChHHHHHHHHHHHHHhccC
Confidence 55555555556665 6677778888888887665
No 400
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=26.74 E-value=7.1e+02 Score=25.54 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=7.9
Q ss_pred HhHHhHHHHHHHhcCCC
Q 002877 406 PLVHAGFDFLLNAMRDE 422 (872)
Q Consensus 406 ~~l~~l~~~l~~~l~d~ 422 (872)
..+..+.|.+.....|+
T Consensus 39 ~i~~~l~~~~~~l~~~~ 55 (322)
T cd07920 39 LIFDEILPHVVELMVDP 55 (322)
T ss_pred HHHHHHHHhHHHHhcCc
Confidence 33444445555544443
No 401
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=26.69 E-value=1.2e+03 Score=28.29 Aligned_cols=179 Identities=13% Similarity=0.074 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 002877 192 AEVRLAATRALYNALDFALT---NFQNEMERNYIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELT 267 (872)
Q Consensus 192 ~~vr~~al~~l~~~~~~~~~---~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~ 267 (872)
.+-...++.+|.+++.+.++ -|..+...--.++.++..+. ..++++..-+++.+..+.... +.+......-+-..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHH
Confidence 34445677888887765432 12221110001223333332 346677777777776654432 22222222111111
Q ss_pred HHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHh-hHHHHHHHHhcccCCcccCCCCcch
Q 002877 268 SNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSS-LVPMLLETLLKQEEDQDQDDSIWNI 346 (872)
Q Consensus 268 ~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~~~l~~~~~d~~~d~~~~~~ 346 (872)
+-.+-+.-+..|..+++.+..+..... +.+..+.. -+..+...+.... ....
T Consensus 1818 LL~lLHS~PS~R~~vL~vLYAL~S~~~-------------------i~keA~~hg~l~yil~~~c~~~--------~~Qq 1870 (2235)
T KOG1789|consen 1818 LLTLLHSQPSMRARVLDVLYALSSNGQ-------------------IGKEALEHGGLMYILSILCLTN--------SDQQ 1870 (2235)
T ss_pred HHHHHhcChHHHHHHHHHHHHHhcCcH-------------------HHHHHHhcCchhhhhHHHhccC--------cHHH
Confidence 222334567788889998988877522 22221111 0111112222211 1457
Q ss_pred hhhHHHHHHHHHhh--cCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcC
Q 002877 347 SMAGGTCLGLVART--VGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEG 398 (872)
Q Consensus 347 r~~a~~~l~~l~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 398 (872)
|.++++.+..+... .|..+.-.++.|+-+.+-|.--..-++++.++..-.+.
T Consensus 1871 RAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1871 RAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 88888888877654 24444444555544433321111117787777766554
No 402
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=26.57 E-value=5.9e+02 Score=24.55 Aligned_cols=42 Identities=5% Similarity=-0.001 Sum_probs=22.1
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhcc
Q 002877 686 VLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGV 727 (872)
Q Consensus 686 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~ 727 (872)
+..|++-++-..+.......+.+++|+...-.+..|...+++
T Consensus 149 ~~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~ 190 (223)
T PF10441_consen 149 LRKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQ 190 (223)
T ss_pred HHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCH
Confidence 344444444444444444445666666666666655555543
No 403
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.01 E-value=2.1e+02 Score=26.47 Aligned_cols=59 Identities=12% Similarity=0.250 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 002877 190 HSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIA 249 (872)
Q Consensus 190 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (872)
....+...+++|+..++..-. ....-...+..+..+..++.+++..+|..++++|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 466788888888888653211 01100001225677888888899999999999998764
No 404
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=25.46 E-value=2.7e+02 Score=21.47 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=40.1
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHhc
Q 002877 2 AMEITQFLLAAQSADANIRNEAEANLRQLQQ-QNLPGFLLSLSVELVN 48 (872)
Q Consensus 2 ~~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~-~~~~~~~~~l~~il~~ 48 (872)
|+|+.+-+..++..|+....+-.+.|+.+.. .+.+.+...|.-+|..
T Consensus 5 A~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~ 52 (80)
T cd07354 5 AQEFSRKVDAILGDDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQT 52 (80)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCc
Confidence 5788899999999999999999999999665 4678888888888864
No 405
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=25.25 E-value=2e+02 Score=26.65 Aligned_cols=55 Identities=5% Similarity=0.095 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhH--HhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLV--HAGFDFLLNAMRDENNHVKDTTAWTLSRIF 438 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 438 (872)
......++.|+.++.... ......+ +..+..|...+..+++.+|..++..|+.++
T Consensus 130 ~~~~~~~l~Clkal~n~~--~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTK--YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSH--HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccH--HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 345566788888887642 2223222 377888999999999999999999988765
No 406
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=25.00 E-value=7.1e+02 Score=26.44 Aligned_cols=95 Identities=9% Similarity=0.146 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccC---ChhHHHHHHHHHHHHHHHhhhHHHhhhH-HHHHHHHhhhc-c--cchHhHHHHHHHHHHHHHHH
Q 002877 609 QIMVLFLRVFACR---SSTVHEEAMLAIGALAYATGPEFAKYMP-EFYQYLQMGLQ-N--SEEYQVCAITVGVVGDVCRA 681 (872)
Q Consensus 609 ~l~~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~-~--~~~~~v~~~a~~~l~~l~~~ 681 (872)
.+...|...+.+. .+.+...|+..++.++..-+..+.-.-+ .+.+.++..+. . ..+.++....-.+++.++-+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 4555555555554 4566667777777777665544332211 23333433333 1 11234555555566666533
Q ss_pred h-c-CCccccHHHHHHHHHHHhcCCC
Q 002877 682 L-D-DKVLPFCDGIMSLLLNALSNSQ 705 (872)
Q Consensus 682 ~-~-~~~~~~~~~i~~~l~~~l~~~~ 705 (872)
- | +.+... +.++.+++++.+++
T Consensus 186 ~~Gl~~~~~~--~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 186 NRGLEKVKSS--NPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHHHHHhc--ChHHHHHHHhCCHH
Confidence 2 2 222222 55666777776653
No 407
>PRK04964 hypothetical protein; Provisional
Probab=24.99 E-value=1.9e+02 Score=20.78 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHhc----CCCCCCCCchhHHHHHHHHHH
Q 002877 672 VGVVGDVCRALDDKVLPFCDGIMSLLLNALS----NSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 672 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~----~~~~~~~~~~~~~~~l~~l~~ 723 (872)
|..+..+...+|..=..|+++-+...++.|+ ++..+.++|+.+..+-.++..
T Consensus 5 CelvR~~ya~IgSGd~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLli 60 (66)
T PRK04964 5 CELVRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLV 60 (66)
T ss_pred HHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHh
Confidence 6666677777776667788888877777765 445677889988887777654
No 408
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.05 E-value=1.3e+03 Score=27.47 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhc
Q 002877 193 EVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVK 272 (872)
Q Consensus 193 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~ 272 (872)
-.+..|+.-|..|... +.|+++++...+......+.-+....+|...++....+.+...+.+.+.++..++..+-...
T Consensus 59 vTK~rALqDLiq~nD~--sQF~NeqFLna~avlfprLsIev~~~~rl~~~qf~s~L~~~l~KKi~k~lk~~i~~~llg~~ 136 (1525)
T COG5219 59 VTKCRALQDLIQWNDP--SQFDNEQFLNALAVLFPRLSIEVEMNPRLEGLQFDSRLYEILSKKIGKRLKKTILRGLLGLK 136 (1525)
T ss_pred HHHHHHHHHHHhccCH--hhhcHHHHHHHHHHHhhheeeeeeeccchhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Confidence 3344455555544321 11444432222222222333344566788888888888888888888888877776665666
Q ss_pred CCChHHHHHHH-HhHhHHhH
Q 002877 273 GDEEAVALQAV-EFWSSICD 291 (872)
Q Consensus 273 ~~~~~~~~~al-~~l~~l~~ 291 (872)
+.+..+...|. ++...+.+
T Consensus 137 d~d~sVsv~a~~~~~~~~~e 156 (1525)
T COG5219 137 DVDDTVSVEANIDTLLEIVE 156 (1525)
T ss_pred chhhhcccccchHHHHHHhh
Confidence 66666655554 33333443
No 409
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=23.03 E-value=1.9e+02 Score=26.91 Aligned_cols=51 Identities=20% Similarity=-0.073 Sum_probs=22.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 002877 9 LLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIML 63 (872)
Q Consensus 9 l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l 63 (872)
|..+.-.+++..+++.+.|..+..-++... +++|...=.++.||..|...|
T Consensus 51 L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A----L~LL~~~f~~~~VR~yAv~~L 101 (184)
T PF00613_consen 51 LRSVDWWNPEEVSEAYQLLLQWPPISPEDA----LELLSPNFPDPFVRQYAVRRL 101 (184)
T ss_dssp HTTSTTTSHHHHHHHHHHHHTSHCTTHHHH----HHCTSTT---HHHHHHHHHHH
T ss_pred HhhCCCCchhhHHHHHHHHHcCCCCCHHHH----HHHHHhhccHHHHHHHHHHHH
Confidence 333333345545555555555544322222 233333222356666665555
No 410
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=22.87 E-value=4.5e+02 Score=21.89 Aligned_cols=65 Identities=8% Similarity=0.155 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHH-HHHHHhhhcccchHhHHHHH
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF-YQYLQMGLQNSEEYQVCAIT 671 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i-~~~l~~~l~~~~~~~v~~~a 671 (872)
+...+++.+...+....+.-+-.++.++.+++.+++.....++... .+.+...... .++.++...
T Consensus 34 ~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~-~~~~~r~kl 99 (114)
T cd03562 34 HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEK-VDEKTRKKL 99 (114)
T ss_pred HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHh-CCHHHHHHH
Confidence 5677888888888877777888889999999998876544443333 3333333332 233455433
No 411
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=22.47 E-value=5.7e+02 Score=22.91 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=56.6
Q ss_pred HHHhhcCCChhHhhHHHHHHHHHHHhh-----cCCCCchHHHHHHHHhhccC--------C---ccH----HHHHHHHHH
Q 002877 97 LLRTLASPVPEARHTSAQVIAKIASIE-----IPQKQWPELIRSLLNNMTQQ--------D---SLA----ALKQATLET 156 (872)
Q Consensus 97 Ll~~l~~~~~~vr~~~~~~l~~i~~~~-----~p~~~~~~ll~~l~~~l~~~--------~---~~~----~~r~~al~~ 156 (872)
++..|.++.-.=|+.+..-+..+.+.. .+...|..++..|+..+..+ . ... .....+..+
T Consensus 9 ~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~ 88 (155)
T PF11640_consen 9 ILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASA 88 (155)
T ss_pred HHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHH
Confidence 455666666667788888888777543 34458999999998877532 0 011 122345555
Q ss_pred HHHhhhccCccccchhhHHHHHHHHHhcccCC
Q 002877 157 LGYVCEEISHQDLVQDEVNAVLTAVVQGMNLA 188 (872)
Q Consensus 157 l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~ 188 (872)
+..+++... ..+.......++..+.+.+.++
T Consensus 89 lR~~ve~~~-~~~k~kt~~~Ll~hI~~~l~~~ 119 (155)
T PF11640_consen 89 LRLFVEKSN-SRLKRKTVKALLDHITDLLPDP 119 (155)
T ss_pred HHHHHHHHH-hhcccchHHHHHHHHHHHhhCC
Confidence 555555432 2222556788888888888874
No 412
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=22.43 E-value=4e+02 Score=22.17 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred hhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002877 366 VPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLS 435 (872)
Q Consensus 366 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~ 435 (872)
.+.+...+.+.+....+..|-.++..+..++..++ ......+. .+.+.+.......++.+|.....++.
T Consensus 35 a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~-~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 35 AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVG-RKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555666666666666788899999999998875 43333333 33455555555667777776655544
No 413
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=22.39 E-value=3.4e+02 Score=24.75 Aligned_cols=12 Identities=33% Similarity=0.130 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHh
Q 002877 53 TESRRLAGIMLK 64 (872)
Q Consensus 53 ~~vr~~a~~~l~ 64 (872)
..||..|...|+
T Consensus 85 ~~VR~yAV~~L~ 96 (169)
T cd00869 85 QEVRAHAVQWLA 96 (169)
T ss_pred hHHHHHHHHHHH
Confidence 455655555543
No 414
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=21.97 E-value=1.1e+03 Score=26.09 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcc
Q 002877 582 LCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQN 661 (872)
Q Consensus 582 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 661 (872)
.+.+++...+.-++ .+.|+++.++..|. ..++. ...++..+-.++. ..-...+...+|.|...+.+
T Consensus 182 LLrvlS~Vye~~P~------~i~PhlP~l~~lL~----q~~p~-~~~ll~~l~~LI~---Qk~~evL~~ciP~L~g~l~d 247 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQ------PINPHLPELLALLS----QLEPE-QYHLLRLLHVLIK---QKQLEVLQKCIPFLIGHLKD 247 (851)
T ss_pred HHHHHHHHHhcCCC------ccCcccHHHHHHhc----CCCHH-HHHHHHHHHHHHH---hccHHHHHHHHHHHHHHhcc
Confidence 34555555555555 78888877776554 33322 2223333333332 22334677888888888877
Q ss_pred cchHhHHHHHHHHHHH
Q 002877 662 SEEYQVCAITVGVVGD 677 (872)
Q Consensus 662 ~~~~~v~~~a~~~l~~ 677 (872)
++....+...|.-++.
T Consensus 248 s~~~~i~~~Ilk~ia~ 263 (851)
T KOG3723|consen 248 STHNDIILNILKEIAV 263 (851)
T ss_pred ccchhHHHHHHHHHHh
Confidence 7655555444444333
No 415
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=21.47 E-value=1.3e+03 Score=26.59 Aligned_cols=32 Identities=6% Similarity=0.154 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHhhcCCcchhc-hHHHHHhhcc
Q 002877 347 SMAGGTCLGLVARTVGDEVVPL-VMPFVEANIV 378 (872)
Q Consensus 347 r~~a~~~l~~l~~~~~~~~~~~-l~~~l~~~l~ 378 (872)
...|..+++.+.+..|...+.. +-|.+.+...
T Consensus 359 NSLasK~mde~mkl~Gm~YLh~tLkPvi~kI~e 391 (800)
T KOG2059|consen 359 NSLASKMMDEFMKLAGMHYLHVTLKPVIDKIFE 391 (800)
T ss_pred cchHHHHHHHHHHHhchHHHHHHhHHHHHHHHh
Confidence 3567888999998888665543 4555555544
No 416
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=21.24 E-value=2.5e+02 Score=20.24 Aligned_cols=52 Identities=8% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHhc----CCCCCCCCchhHHHHHHHHHH
Q 002877 672 VGVVGDVCRALDDKVLPFCDGIMSLLLNALS----NSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 672 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~----~~~~~~~~~~~~~~~l~~l~~ 723 (872)
|..+..+...+|..=..|+++-+...++.|+ ++..+.++|+.+..+-.++..
T Consensus 5 CeliR~~ya~IgSGd~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANLli 60 (66)
T PF06786_consen 5 CELIRELYAQIGSGDQGYIPDAIGCALKTLNDIAADEALPEDVREQAAFAAANLLI 60 (66)
T ss_pred HHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHHH
Confidence 5666666666776666788887777776665 455677889988877777654
No 417
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.18 E-value=1.6e+02 Score=24.78 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=25.9
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIFE 439 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 439 (872)
=.++.++..|.|+++.|+..|...|.+.+.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999887764
No 418
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.16 E-value=6.1e+02 Score=22.37 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHh
Q 002877 458 RILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVR 536 (872)
Q Consensus 458 ~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~ 536 (872)
.+-..+...+.+ ++.||..|..|+...= .+.+.||-+++... +. + ...|.. |..+..
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k---------~~~l~pY~d~L~~L----ld---d--~~frde----L~~f~~ 74 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK---------DPYLTPYKDNLENL----LD---D--KTFRDE----LTTFNL 74 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------cHHHHhHHHHHHHH----cC---c--chHHHH----HHhhcc
Confidence 444555566666 9999999999886642 34567776543333 22 1 223533 333332
Q ss_pred cCCCc--ccHHHHHHHHHHHHHHHHHHH
Q 002877 537 CSNIT--ETSQIIAELLPAIMGRLGQTL 562 (872)
Q Consensus 537 ~~~~~--~~~~~~~~l~~~l~~~l~~~~ 562 (872)
..+ . --.++-+.++|.++..+-.-+
T Consensus 75 ~~~-~~~I~~ehR~~l~pvvlRILygk~ 101 (141)
T PF07539_consen 75 SDE-SSVIEEEHRPELMPVVLRILYGKM 101 (141)
T ss_pred cCC-cCCCCHHHHhHHHHHHHHHHHHHH
Confidence 222 1 124677788888888875544
No 419
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=20.10 E-value=9.4e+02 Score=24.54 Aligned_cols=191 Identities=8% Similarity=0.116 Sum_probs=104.4
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhh---HHhHH---HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhh
Q 002877 223 MKVVCETAKSKEVEIRQAAFECLVSIASTYYEVL---EPYMQ---TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIEL 296 (872)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~l~---~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~ 296 (872)
+..+.+.+..-+.+.|+.+..++..+....-... ..|+. +++..++..-.+ .+++...+-.++....+++.-
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe~L- 158 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHEFL- 158 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhHHH-
Confidence 3444455555677778888888888776532111 12222 344445444332 477887777777777665431
Q ss_pred hhhcCCCCCCCCCCchHHHHHhHH-hhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcch-------hc
Q 002877 297 QEFENPETGDSDSPNYHFIEKARS-SLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVV-------PL 368 (872)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~-------~~ 368 (872)
.+-.+. .-+...+.++..+. +++..-|....+.+...-...+. ..
T Consensus 159 ------------------akiiL~s~~~~~FF~~vq~p~---------FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ 211 (342)
T KOG1566|consen 159 ------------------AKIILESTNFEKFFLYVQLPN---------FDIASDAFSTFKELLTRHKSVVAEFLIRNYDN 211 (342)
T ss_pred ------------------HHHHHcchhHHHHHHHHhccc---------hHHHHHHHHHHHHHHHHhHHHHHHHHHhChhh
Confidence 000000 11222233333211 22222233333332221111111 11
Q ss_pred h-HHHHHhhccCCCcchHHHHHHHHHHhhcCCC-ccchhHhHH--hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhcc
Q 002877 369 V-MPFVEANIVKSDWRCREAATYAFGSVLEGPT-IDKLAPLVH--AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 369 l-~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
. .+.....+.+.++-.|.-++.++|.+.-+.. ...+..|+. .-+..+...|.|+...++..|....--+.....
T Consensus 212 ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 212 FFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred hHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 1 2224556678889899999999998775432 234566766 778889999999999999999887665554433
Done!