Query 002877
Match_columns 872
No_of_seqs 266 out of 2671
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 05:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpt_A Importin beta-1 subunit 100.0 6.1E-72 2.1E-76 670.2 95.6 844 3-871 4-860 (861)
2 1qgr_A Protein (importin beta 100.0 5.7E-71 1.9E-75 663.1 89.5 851 3-871 1-874 (876)
3 4fdd_A Transportin-1; heat rep 100.0 3.2E-62 1.1E-66 580.5 74.6 739 3-831 13-791 (852)
4 1wa5_C Importin alpha RE-expor 100.0 9.2E-46 3.1E-50 442.7 63.2 676 3-746 5-772 (960)
5 2x19_B Importin-13; nuclear tr 100.0 8.3E-42 2.8E-46 412.0 68.6 736 4-805 25-876 (963)
6 1ibr_B P95, importin beta-1 su 100.0 5.9E-44 2E-48 395.2 44.2 457 3-468 1-461 (462)
7 3m1i_C Exportin-1; heat repeat 100.0 3.5E-42 1.2E-46 415.1 61.3 755 3-824 16-929 (1049)
8 2x1g_F Cadmus; transport prote 100.0 5.4E-43 1.8E-47 421.5 50.8 694 3-746 7-840 (971)
9 4fdd_A Transportin-1; heat rep 100.0 8.9E-41 3.1E-45 396.5 65.2 728 6-829 51-829 (852)
10 3ibv_A Exportin-T; karyopherin 100.0 1E-39 3.5E-44 382.2 62.9 728 3-830 6-876 (980)
11 1u6g_C TIP120 protein, CAND1; 100.0 1.1E-40 3.8E-45 411.6 52.9 659 3-745 6-743 (1230)
12 4hat_C Exportin-1; heat repeat 100.0 5.3E-39 1.8E-43 375.7 63.2 752 4-824 17-929 (1023)
13 2bpt_A Importin beta-1 subunit 100.0 2.8E-36 9.5E-41 361.2 65.2 719 15-825 53-858 (861)
14 3gjx_A Exportin-1; transport, 100.0 9.7E-36 3.3E-40 345.0 59.8 746 4-807 29-937 (1073)
15 1qgr_A Protein (importin beta 100.0 7.7E-36 2.6E-40 358.0 57.0 711 51-870 13-829 (876)
16 1u6g_C TIP120 protein, CAND1; 100.0 3.4E-32 1.2E-36 335.9 63.2 675 38-804 7-744 (1230)
17 1b3u_A Protein (protein phosph 100.0 7.9E-33 2.7E-37 316.1 42.8 572 94-775 12-585 (588)
18 1b3u_A Protein (protein phosph 100.0 6.7E-31 2.3E-35 300.1 46.0 572 132-867 11-586 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 6.1E-29 2.1E-33 299.7 47.7 507 3-560 11-682 (1204)
20 1wa5_C Importin alpha RE-expor 99.9 1.5E-19 5E-24 216.3 65.4 694 15-803 49-868 (960)
21 2x1g_F Cadmus; transport prote 99.9 4.1E-20 1.4E-24 222.5 46.6 614 190-846 52-742 (971)
22 2x19_B Importin-13; nuclear tr 99.9 1.7E-17 5.7E-22 200.0 65.6 662 6-745 106-874 (963)
23 1ibr_B P95, importin beta-1 su 99.9 5.8E-19 2E-23 194.6 33.0 424 228-702 8-461 (462)
24 3now_A UNC-45 protein, SD10334 99.8 3.8E-16 1.3E-20 175.0 49.5 647 146-868 21-737 (810)
25 3now_A UNC-45 protein, SD10334 99.8 2.6E-16 9E-21 176.3 46.9 663 5-743 8-758 (810)
26 2vgl_B AP-2 complex subunit be 99.8 2.9E-16 1E-20 176.4 38.5 440 4-537 14-458 (591)
27 3m1i_C Exportin-1; heat repeat 99.8 5.2E-14 1.8E-18 169.8 57.7 658 16-725 113-880 (1049)
28 2vgl_B AP-2 complex subunit be 99.8 5.3E-16 1.8E-20 174.3 37.1 439 5-543 51-499 (591)
29 3ibv_A Exportin-T; karyopherin 99.8 3.1E-13 1.1E-17 158.7 57.8 662 16-744 103-896 (980)
30 2jdq_A Importin alpha-1 subuni 99.8 1.6E-16 5.3E-21 174.3 27.9 365 127-538 13-392 (450)
31 4hat_C Exportin-1; heat repeat 99.8 2.7E-12 9.3E-17 150.7 63.8 651 17-726 114-881 (1023)
32 2z6g_A B-catenin; FULL-length, 99.7 8.3E-15 2.8E-19 169.5 39.7 524 95-683 118-666 (780)
33 2jdq_A Importin alpha-1 subuni 99.7 1.3E-15 4.3E-20 167.0 29.5 394 223-679 22-442 (450)
34 4b8j_A Importin subunit alpha- 99.7 3E-16 1E-20 175.3 23.5 403 370-825 76-497 (528)
35 1wa5_B Importin alpha subunit; 99.7 4.2E-16 1.4E-20 174.0 23.2 402 367-824 86-510 (530)
36 1wa5_B Importin alpha subunit; 99.7 4.1E-15 1.4E-19 166.0 27.8 366 128-539 84-460 (530)
37 2z6g_A B-catenin; FULL-length, 99.7 2.8E-14 9.6E-19 165.1 33.6 516 128-729 112-669 (780)
38 1w63_A Adapter-related protein 99.7 2.3E-13 7.9E-18 153.2 40.0 478 224-867 73-576 (618)
39 2z6h_A Catenin beta-1, beta-ca 99.7 1.4E-14 4.8E-19 165.3 29.5 489 321-868 14-527 (644)
40 4b8j_A Importin subunit alpha- 99.7 3.7E-15 1.3E-19 166.4 22.6 355 322-726 75-446 (528)
41 2z6h_A Catenin beta-1, beta-ca 99.6 4.4E-13 1.5E-17 152.9 37.6 490 131-682 14-529 (644)
42 1w63_A Adapter-related protein 99.6 1.5E-12 5.1E-17 146.6 41.2 472 51-637 82-576 (618)
43 3gjx_A Exportin-1; transport, 99.6 2.8E-09 9.7E-14 124.4 65.5 649 16-726 125-907 (1073)
44 2qk1_A Protein STU2; STU2P, XM 99.6 2.5E-14 8.5E-19 139.8 19.1 206 372-651 20-234 (249)
45 1jdh_A Beta-catenin; beta-cate 99.6 8.7E-13 3E-17 147.7 33.8 463 7-534 21-528 (529)
46 1jdh_A Beta-catenin; beta-cate 99.6 3.2E-13 1.1E-17 151.3 30.0 495 92-678 17-528 (529)
47 2vgl_A Adaptor protein complex 99.6 6.3E-12 2.2E-16 140.7 39.9 507 191-867 51-588 (621)
48 3ul1_B Importin subunit alpha- 99.6 1.2E-13 4E-18 152.3 24.1 403 370-823 59-477 (510)
49 3tpo_A Importin subunit alpha- 99.6 2.8E-13 9.6E-18 150.3 25.0 403 369-822 77-495 (529)
50 2vgl_A Adaptor protein complex 99.6 3.4E-11 1.2E-15 134.8 41.5 486 95-678 77-587 (621)
51 2qk2_A LP04448P; mini spindles 99.5 1.6E-13 5.5E-18 135.1 18.6 207 363-651 10-219 (242)
52 2qk1_A Protein STU2; STU2P, XM 99.5 2.6E-12 8.9E-17 125.5 22.6 205 414-693 20-234 (249)
53 3tpo_A Importin subunit alpha- 99.5 7.2E-12 2.5E-16 139.0 26.6 402 178-636 78-495 (529)
54 3ul1_B Importin subunit alpha- 99.5 4.3E-11 1.5E-15 131.8 31.7 391 4-438 58-477 (510)
55 2qk2_A LP04448P; mini spindles 99.4 4.3E-12 1.5E-16 124.9 18.4 199 411-693 16-219 (242)
56 3opb_A SWI5-dependent HO expre 99.3 1E-07 3.5E-12 104.9 43.8 546 94-711 134-766 (778)
57 3opb_A SWI5-dependent HO expre 99.3 2E-07 6.9E-12 102.6 43.9 587 129-812 130-766 (778)
58 4ady_A RPN2, 26S proteasome re 99.3 3.2E-07 1.1E-11 103.3 45.7 293 369-745 393-698 (963)
59 1oyz_A Hypothetical protein YI 99.2 8E-10 2.7E-14 111.6 20.8 252 370-719 25-278 (280)
60 1xm9_A Plakophilin 1; armadill 99.2 2E-09 7E-14 116.4 24.7 381 370-867 4-448 (457)
61 1oyz_A Hypothetical protein YI 99.1 1.9E-09 6.6E-14 108.8 19.3 254 321-676 23-278 (280)
62 3a6p_A Exportin-5; exportin-5, 99.1 4.2E-07 1.4E-11 110.1 42.6 563 146-745 26-681 (1204)
63 4hxt_A De novo protein OR329; 99.1 3.1E-09 1.1E-13 105.5 20.0 231 223-488 4-243 (252)
64 4hxt_A De novo protein OR329; 99.1 5.2E-10 1.8E-14 111.2 13.5 240 370-646 4-249 (252)
65 2iw3_A Elongation factor 3A; a 99.1 5.1E-08 1.7E-12 111.3 31.0 311 347-704 31-357 (986)
66 4db8_A Armadillo-repeat protei 99.1 1.2E-09 3.9E-14 108.6 15.5 230 222-486 13-251 (252)
67 3l6x_A Catenin delta-1; cateni 99.1 1.6E-08 5.4E-13 109.7 24.3 356 366-746 46-456 (584)
68 1xm9_A Plakophilin 1; armadill 99.0 1.3E-07 4.4E-12 102.2 28.8 357 133-537 4-450 (457)
69 2iw3_A Elongation factor 3A; a 99.0 6.4E-07 2.2E-11 102.3 35.2 354 96-539 18-382 (986)
70 4db8_A Armadillo-repeat protei 99.0 9.5E-09 3.3E-13 101.9 17.3 231 178-439 14-251 (252)
71 3l6x_A Catenin delta-1; cateni 98.9 1.6E-06 5.5E-11 94.1 32.4 364 222-680 49-476 (584)
72 3nmz_A APC variant protein; pr 98.9 2.9E-08 9.8E-13 105.2 18.0 304 382-727 96-454 (458)
73 3nmz_A APC variant protein; pr 98.9 7.5E-08 2.6E-12 102.0 21.2 331 321-684 70-454 (458)
74 2db0_A 253AA long hypothetical 98.9 1.1E-07 3.9E-12 81.6 17.1 218 606-868 29-246 (253)
75 3ltj_A Alpharep-4; protein eng 98.9 8.2E-08 2.8E-12 91.2 18.0 181 222-484 15-196 (201)
76 3ltm_A Alpha-REP4; protein eng 98.9 7E-08 2.4E-12 92.5 17.7 185 222-488 20-205 (211)
77 4db6_A Armadillo repeat protei 98.9 1.4E-08 4.9E-13 97.4 12.5 159 363-538 7-169 (210)
78 1xqr_A HSPBP1 protein; armadil 98.8 2.6E-07 8.9E-12 92.1 20.3 178 383-640 55-240 (296)
79 2db0_A 253AA long hypothetical 98.8 2.5E-06 8.6E-11 73.4 22.4 213 222-486 33-246 (253)
80 4ady_A RPN2, 26S proteasome re 98.8 0.00062 2.1E-08 77.1 49.1 336 423-866 371-717 (963)
81 4db6_A Armadillo repeat protei 98.7 4.7E-07 1.6E-11 86.6 17.0 190 222-439 13-209 (210)
82 3ltm_A Alpha-REP4; protein eng 98.7 1.5E-06 5E-11 83.2 20.2 185 5-252 21-205 (211)
83 3nmw_A APC variant protein; AR 98.7 2.9E-07 1E-11 94.5 15.8 267 384-684 48-338 (354)
84 3ltj_A Alpharep-4; protein eng 98.7 2.6E-06 9E-11 80.6 20.8 181 5-248 16-196 (201)
85 2of3_A ZYG-9; multifunctional 98.5 3.3E-06 1.1E-10 80.9 17.4 183 230-443 55-240 (266)
86 1xqr_A HSPBP1 protein; armadil 98.5 1.5E-06 5E-11 86.6 14.7 177 346-539 56-241 (296)
87 3nmw_A APC variant protein; AR 98.5 1.5E-06 5.2E-11 89.2 13.9 227 470-728 97-339 (354)
88 1vsy_5 Proteasome activator BL 98.4 0.0002 6.9E-09 83.3 30.2 743 5-828 135-970 (997)
89 4ffb_C Protein STU2; tubulin f 98.3 1.3E-05 4.6E-10 80.0 17.3 180 342-539 21-215 (278)
90 4ffb_C Protein STU2; tubulin f 98.3 5.3E-06 1.8E-10 82.9 14.1 198 373-643 14-217 (278)
91 2of3_A ZYG-9; multifunctional 98.3 1.6E-05 5.5E-10 76.2 15.5 198 371-650 49-248 (266)
92 3tjz_B Coatomer subunit gamma; 98.3 2E-05 7E-10 79.5 17.0 312 92-478 26-345 (355)
93 3b2a_A TON_1937, putative unch 98.2 2.9E-05 9.9E-10 70.5 15.1 185 222-440 34-219 (265)
94 3tjz_B Coatomer subunit gamma; 98.2 1E-05 3.5E-10 81.7 11.7 124 344-487 82-206 (355)
95 4gmo_A Putative uncharacterize 98.1 0.0016 5.6E-08 73.8 28.5 157 368-539 35-217 (684)
96 3b2a_A TON_1937, putative unch 98.0 0.0036 1.2E-07 57.1 22.9 225 175-436 32-258 (265)
97 1te4_A Conserved protein MTH18 98.0 3.9E-06 1.3E-10 72.7 3.9 122 364-533 8-130 (131)
98 1vsy_5 Proteasome activator BL 98.0 0.00035 1.2E-08 81.3 21.1 404 92-539 508-969 (997)
99 3grl_A General vesicular trans 97.9 0.045 1.5E-06 59.0 41.2 332 128-487 18-395 (651)
100 3oc3_A Helicase MOT1, MOT1; re 97.9 0.00057 1.9E-08 70.6 17.7 247 132-435 175-432 (800)
101 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00067 2.3E-08 70.0 17.9 225 263-535 175-403 (800)
102 3grl_A General vesicular trans 97.8 0.0015 5.2E-08 70.2 21.6 329 321-680 21-394 (651)
103 4gmo_A Putative uncharacterize 97.7 0.03 1E-06 63.4 31.0 156 132-294 36-217 (684)
104 1te4_A Conserved protein MTH18 97.7 7.8E-05 2.7E-09 64.4 7.0 104 344-483 26-130 (131)
105 3tt9_A Plakophilin-2; cell adh 97.6 0.00066 2.3E-08 64.2 12.9 198 368-590 8-228 (233)
106 3u0r_A Apoptosis inhibitor 5; 97.5 0.011 3.8E-07 60.5 21.5 314 412-781 31-358 (507)
107 3fga_B Serine/threonine-protei 97.4 0.041 1.4E-06 55.8 23.1 265 379-683 95-369 (403)
108 2npp_B PP2A, B subunit, serine 97.1 0.049 1.7E-06 56.3 20.6 261 380-680 129-399 (449)
109 3tt9_A Plakophilin-2; cell adh 96.9 0.005 1.7E-07 58.2 10.6 207 411-637 9-228 (233)
110 3l9t_A Putative uncharacterize 96.7 0.0059 2E-07 56.4 9.2 123 344-488 85-209 (240)
111 4atg_A TAF6; transcription, TF 96.5 0.082 2.8E-06 47.6 14.7 126 353-486 28-162 (196)
112 4atg_A TAF6; transcription, TF 96.4 0.051 1.8E-06 48.9 12.8 102 602-705 40-144 (196)
113 3l9t_A Putative uncharacterize 96.2 0.054 1.8E-06 50.1 12.2 142 260-443 69-211 (240)
114 1vsy_4 Proteasome activator BL 96.2 2.3 8E-05 48.2 33.4 79 454-538 335-414 (799)
115 3u0r_A Apoptosis inhibitor 5; 95.9 2 6.8E-05 44.3 33.2 63 225-292 33-95 (507)
116 1w9c_A CRM1 protein, exportin 95.7 1.1 3.8E-05 43.8 19.4 166 523-705 45-228 (321)
117 3gs3_A Symplekin, LD45768P; he 94.4 3.5 0.00012 39.2 20.0 168 87-260 48-253 (257)
118 2jak_A Serine/threonine-protei 94.4 0.51 1.7E-05 47.7 13.3 185 410-634 174-363 (392)
119 1upk_A MO25 protein; transfera 94.2 4.6 0.00016 39.6 20.5 181 96-292 82-284 (341)
120 3o2t_A Symplekin; heat repeat, 93.5 5 0.00017 40.7 18.7 172 87-264 58-270 (386)
121 3fga_B Serine/threonine-protei 93.3 7.9 0.00027 39.3 21.8 233 5-258 131-374 (403)
122 3gs3_A Symplekin, LD45768P; he 93.3 5.8 0.0002 37.7 25.1 158 125-293 48-245 (257)
123 2npp_B PP2A, B subunit, serine 93.2 8.8 0.0003 39.7 21.6 229 5-258 164-407 (449)
124 1upk_A MO25 protein; transfera 93.2 7 0.00024 38.3 19.1 188 50-251 89-284 (341)
125 3o2t_A Symplekin; heat repeat, 92.5 10 0.00034 38.5 28.4 157 127-293 59-258 (386)
126 1w9c_A CRM1 protein, exportin 91.5 11 0.00038 36.9 23.3 125 526-663 93-228 (321)
127 1vsy_4 Proteasome activator BL 90.8 26 0.00088 39.8 46.7 286 366-681 337-688 (799)
128 1lsh_A Lipovitellin (LV-1N, LV 90.5 12 0.0004 44.5 20.2 121 380-531 407-538 (1056)
129 1lsh_A Lipovitellin (LV-1N, LV 83.4 80 0.0027 37.4 22.8 158 104-292 407-577 (1056)
130 3dad_A FH1/FH2 domain-containi 81.4 31 0.001 34.0 14.0 149 375-539 125-289 (339)
131 1x5b_A Signal transducing adap 79.3 21 0.00071 31.2 11.1 77 608-684 51-129 (163)
132 1ho8_A Vacuolar ATP synthase s 79.1 65 0.0022 33.5 23.0 58 381-440 418-477 (480)
133 3g2s_A C-terminal fragment of 78.3 26 0.0009 29.9 11.1 77 608-684 47-130 (149)
134 1juq_A ADP-ribosylation factor 77.4 28 0.00095 30.6 11.4 77 608-684 49-132 (171)
135 3dad_A FH1/FH2 domain-containi 76.7 60 0.0021 31.9 17.2 151 135-292 122-287 (339)
136 3ldz_A STAM-1, signal transduc 76.1 17 0.00059 30.7 9.4 76 176-253 42-117 (140)
137 2jak_A Serine/threonine-protei 75.1 34 0.0012 34.6 12.6 180 5-203 176-363 (392)
138 1mhq_A ADP-ribosylation factor 74.2 40 0.0014 28.7 11.3 77 608-684 37-120 (148)
139 1lrv_A LRV, leucine-rich repea 74.1 0.99 3.4E-05 42.8 1.3 186 99-435 57-242 (244)
140 1vdy_A Hypothetical protein (R 74.1 11 0.00037 31.7 7.4 95 344-439 25-130 (140)
141 3ldz_A STAM-1, signal transduc 73.6 40 0.0014 28.4 11.4 76 608-684 41-118 (140)
142 1x5b_A Signal transducing adap 72.0 22 0.00075 31.0 9.3 68 792-861 51-118 (163)
143 3zyq_A Hepatocyte growth facto 71.6 32 0.0011 32.0 10.9 77 608-684 44-122 (226)
144 3s4w_B Protein FACD2, fanconi 68.8 1.9E+02 0.0064 34.8 18.5 188 52-249 358-548 (1323)
145 1dvp_A HRS, hepatocyte growth 68.3 45 0.0015 30.8 11.2 77 608-684 41-119 (220)
146 1lrv_A LRV, leucine-rich repea 68.2 1.6 5.6E-05 41.3 1.3 184 138-481 57-241 (244)
147 1sz9_A PCF11 protein; RNA poly 67.3 51 0.0018 27.9 10.3 97 606-703 40-137 (144)
148 1mhq_A ADP-ribosylation factor 65.4 61 0.0021 27.6 10.5 75 178-254 40-120 (148)
149 3g2s_A C-terminal fragment of 63.0 71 0.0024 27.2 13.1 78 175-254 47-130 (149)
150 1juq_A ADP-ribosylation factor 61.9 82 0.0028 27.6 13.2 78 175-254 49-132 (171)
151 1dvp_A HRS, hepatocyte growth 61.0 91 0.0031 28.7 11.8 74 177-252 43-117 (220)
152 1ho8_A Vacuolar ATP synthase s 60.8 1.6E+02 0.0056 30.6 18.2 58 808-867 418-475 (480)
153 2fv2_A RCD1 required for cell 58.5 72 0.0024 29.9 10.1 137 151-294 74-227 (268)
154 3zyq_A Hepatocyte growth facto 54.5 57 0.0019 30.3 9.1 69 792-862 44-112 (226)
155 4flb_A Regulation of nuclear P 49.8 1.1E+02 0.0037 25.3 12.8 67 407-489 5-72 (132)
156 2fv2_A RCD1 required for cell 49.3 1.7E+02 0.0059 27.4 16.7 102 148-251 117-225 (268)
157 3rru_A TOM1L1 protein; structu 48.1 58 0.002 27.9 7.4 91 649-739 52-147 (152)
158 1elk_A Target of MYB1; superhe 46.9 92 0.0031 26.8 8.6 68 792-860 52-122 (157)
159 2b6c_A Hypothetical protein EF 45.9 61 0.0021 29.9 7.9 88 344-442 104-191 (220)
160 1vdy_A Hypothetical protein (R 44.3 1.1E+02 0.0037 25.7 8.2 33 260-292 47-79 (140)
161 3jxy_A Alkylpurine DNA glycosy 42.6 1.7E+02 0.0058 27.1 10.5 88 344-442 110-198 (232)
162 1t06_A Hypothetical protein; s 41.1 72 0.0025 29.8 7.6 74 367-443 107-184 (235)
163 1elk_A Target of MYB1; superhe 37.9 1.9E+02 0.0066 24.7 10.9 76 608-683 52-133 (157)
164 3ebb_A Phospholipase A2-activa 35.1 2.4E+02 0.0083 27.4 10.6 113 367-485 146-262 (304)
165 1sz9_A PCF11 protein; RNA poly 30.7 2.4E+02 0.0082 23.7 11.2 75 128-207 40-114 (144)
166 4fu3_A Regulation of nuclear P 29.8 2.3E+02 0.008 23.3 9.0 64 410-489 7-71 (135)
167 3jxy_A Alkylpurine DNA glycosy 29.4 3.4E+02 0.012 25.0 14.2 152 17-205 41-193 (232)
168 3qml_C Protein SLS1, nucleotid 28.3 4.1E+02 0.014 25.7 11.7 72 16-90 41-120 (315)
169 3eg5_B Protein diaphanous homo 27.9 3E+02 0.01 27.8 10.3 121 170-291 110-246 (383)
170 4dhx_B Enhancer of yellow 2 tr 26.0 2.4E+02 0.008 22.0 7.2 89 12-102 5-96 (101)
171 3rru_A TOM1L1 protein; structu 24.6 3.1E+02 0.011 23.3 8.1 76 608-683 52-133 (152)
172 2b6c_A Hypothetical protein EF 23.9 4.1E+02 0.014 24.1 14.5 152 16-205 34-186 (220)
173 3ut4_A CTHE_2751, putative unc 23.7 3.1E+02 0.011 22.7 11.6 65 452-539 25-90 (134)
174 3d9j_A RNA-binding protein 16; 22.8 3.4E+02 0.012 22.8 8.2 83 463-559 10-97 (145)
175 2rg8_A Programmed cell death p 22.1 2.8E+02 0.0095 24.0 7.5 58 52-123 57-117 (165)
176 3gae_A Protein DOA1; UFD3, CDC 21.3 5.1E+02 0.017 24.2 12.7 137 344-487 68-218 (253)
177 3d9j_A RNA-binding protein 16; 20.7 3.8E+02 0.013 22.5 11.9 93 606-704 39-138 (145)
No 1
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=6.1e-72 Score=670.22 Aligned_cols=844 Identities=33% Similarity=0.557 Sum_probs=720.6
Q ss_pred chHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 3 MEITQFLLAA-QSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 3 ~~~~~~l~~~-~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
|++.++|+++ +|||+++|++|+++|++++++++|+|+..|++++.+++.++++|++|+++|||.+.++|..+.......
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 6899999999 999999999999999999987789999999999988666899999999999999999998877777778
Q ss_pred hhc-CChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHh
Q 002877 82 WLA-IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYV 160 (872)
Q Consensus 82 w~~-l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 160 (872)
|.. ++++.+..||+.|++.+.++++.+|+.++.+++.|++.++|.+.|+++++.+.+.++++. ++..|++++.+++.+
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~-~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRASLLALGYM 162 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 997 999999999999999999999999999999999999999985589999999999998742 577899999999999
Q ss_pred hhccCccc--cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHH
Q 002877 161 CEEISHQD--LVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIR 238 (872)
Q Consensus 161 ~~~~~~~~--l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 238 (872)
++.+.++. + ..+.+.+++.+.+.+.+++++..||..+++++..++.+++.++..+..++++++.+.+.++++++++|
T Consensus 163 ~~~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r 241 (861)
T 2bpt_A 163 CESADPQSQAL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQ 241 (861)
T ss_dssp HHTSSTTSSTT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHcCChhhhHH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHH
Confidence 99875443 5 67889999999999998544899999999999998877766655444456788888888889999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHH
Q 002877 239 QAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEK 317 (872)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (872)
..+++++..++..+++.+.+++. .+++.+...+.+.+++++..++++|..+++.......+.......+.. ++++.++
T Consensus 242 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 320 (861)
T 2bpt_A 242 AAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQ-SYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh-hHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999988643211100000000000 1235667
Q ss_pred hHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhc
Q 002877 318 ARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLE 397 (872)
Q Consensus 318 ~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~ 397 (872)
+++.++|.++..+.+.++|+++| .|++|.++..++..++..+|+.+++.+++++.+.+.+++|+.|++++.+++.+++
T Consensus 321 ~~~~il~~ll~~l~~~~~d~~d~--~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNEDPEDD--DWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC-CCC--CCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhcccccccc--cCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 78899999999988765544444 4999999999999999999989999999999999999999999999999999998
Q ss_pred CCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHH
Q 002877 398 GPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKV 477 (872)
Q Consensus 398 ~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a 477 (872)
++.++.+.++++.+++.++..+.|+++.||.++++++++++.+.+. ......+++.+++.++..+.+++.|+..|
T Consensus 399 ~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~~~~l~~l~~~l~~~~~v~~~a 473 (861)
T 2bpt_A 399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE-----SIDPQQHLPGVVQACLIGLQDHPKVATNC 473 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG-----GSCTTTTHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhh-----hcCCHHHHHHHHHHHHHHhccChHHHHHH
Confidence 8754667888999999999999999999999999999999998764 11235789999999999998889999999
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q 002877 478 CGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGR 557 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~ 557 (872)
++++..+++.+.. ..+..+.+|++.+++.++..+...+. +..+|..++++++.++...+ ..+.+|+..++|.+++.
T Consensus 474 ~~al~~l~~~~~~--~~~~~l~~~~~~il~~L~~~l~~~d~-~~~vr~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~~~ 549 (861)
T 2bpt_A 474 SWTIINLVEQLAE--ATPSPIYNFYPALVDGLIGAANRIDN-EFNARASAFSALTTMVEYAT-DTVAETSASISTFVMDK 549 (861)
T ss_dssp HHHHHHHHHHHSS--SSSCGGGGGHHHHHHHHHHHHTCSCC-GGGHHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHHhCcCc-chHHHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHHHHH
Confidence 9999999998731 01366889999999999999985542 35679999999999999999 88999999999999999
Q ss_pred HHHHHh--hhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCCh-hHHHHHHHHHH
Q 002877 558 LGQTLE--LQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSS-TVHEEAMLAIG 634 (872)
Q Consensus 558 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~v~~~a~~~l~ 634 (872)
|.+.+. .++.+..+++....++..++.+++.+++.++. .+.||.+.+++.++..+.+.+. .+|+.++.+++
T Consensus 550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~ 623 (861)
T 2bpt_A 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623 (861)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG------GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH
Confidence 987531 12223334455667888999999999999998 8899999999999999988877 89999999999
Q ss_pred HHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhH
Q 002877 635 ALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPI 714 (872)
Q Consensus 635 ~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 714 (872)
.++...+..+.+|++.++|.+...+.+ ++++++..++.+++.++...+..+.+|++.+++.+++.+.+++.++++|..+
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~ 702 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAV 702 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHH
Confidence 999999999999999999999999965 3456999999999999999999999999999999999998764468999999
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHH
Q 002877 715 LSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHL 794 (872)
Q Consensus 715 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 794 (872)
+.++|.++...|+.|.+|++.++|.+...+....++ +|+|..++...+|..+++++.+++..++.. +..+.+|++.+
T Consensus 703 ~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~~~~~~~i 779 (861)
T 2bpt_A 703 LSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPEN--GTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEALFPYVGTI 779 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSS--SSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHGGGHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHH
Confidence 999999999999999999999999999987754433 355556777889999999999999888753 35689999999
Q ss_pred HHHHHHHhcCCC-C-CHhHHHHHHHHHHHHHhhh-CcchhhhccCchHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHH
Q 002877 795 LQFIELIFKDNH-R-DENVTKAAVAVMGDLADAL-GPNTKLLFKDSSFCNDFMSECL--RSDDEQLKETAGWTQGMINRV 869 (872)
Q Consensus 795 l~~l~~~~~~~~-~-~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~v~~ll~~~~--~~~~~~~~~~a~~~~~~~~~~ 869 (872)
++.+.+.+.+.+ . ++.+|.+|+.++++++..+ |+. ...++...+++.+++... .+.+.+++++|.||+|.++++
T Consensus 780 ~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 780 FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGS-IKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTST-TGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCch-HHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 999988876521 1 7899999999999999999 654 545565479999999844 468889999999999999987
Q ss_pred hc
Q 002877 870 LV 871 (872)
Q Consensus 870 ~~ 871 (872)
+.
T Consensus 859 ~~ 860 (861)
T 2bpt_A 859 LS 860 (861)
T ss_dssp HT
T ss_pred hC
Confidence 53
No 2
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=5.7e-71 Score=663.15 Aligned_cols=851 Identities=40% Similarity=0.665 Sum_probs=719.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
|++.++|++++|||+++|++|+++|+++..+++++++..|++++.+++.++.+|++|++.|||.+...|..+.......|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 79999999999999999999999999998877899999999999886568999999999999999888776666667899
Q ss_pred hcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhh
Q 002877 83 LAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCE 162 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 162 (872)
..++++.+..||+.+++.+.++++.+ +.++.+++.+++.++|...|+++++.+.+.+.+++.++..|++++.+++.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888 99999999999999886699999999999998752246789999999999999
Q ss_pred ccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHH
Q 002877 163 EISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAF 242 (872)
Q Consensus 163 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 242 (872)
...++.+ ..+.+.+++.+.+.+.+++++..+|..+++++..++.+++.++.....++++++.+.+.++++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~ 238 (876)
T 1qgr_A 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (876)
T ss_dssp HSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8755666 778999999999999885447899999999999988776665544444456888888888888999999999
Q ss_pred HHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhc--CCCCC-CCCCCchHHHHHh
Q 002877 243 ECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFE--NPETG-DSDSPNYHFIEKA 318 (872)
Q Consensus 243 ~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~ 318 (872)
+++..++..+++.+.+++. .+++.++..+.+.+++++..+++||..+++.......+. ....+ .+.+...++.+++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 9999999999999999999 999999998889999999999999999987643211000 00000 0112233466677
Q ss_pred HHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcC
Q 002877 319 RSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEG 398 (872)
Q Consensus 319 l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 398 (872)
++.++|.++..+...++|++++ .|++|.+|..++..++..+++.+++.+++.+...+.+++|+.|++++.+++.++++
T Consensus 319 ~~~ll~~ll~~l~~~~~d~~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTT--CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHhHHHHHHhhccccccccc--ccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 7889999999887665544333 49999999999999999999888999999999999999999999999999999998
Q ss_pred CCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHHH
Q 002877 399 PTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKVC 478 (872)
Q Consensus 399 ~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~ 478 (872)
+.++.+.++++.++|.++..+.|+++.||.+|+++++++++..+. .....++++.+++.++..+.++++|+..++
T Consensus 397 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-----~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~ 471 (876)
T 1qgr_A 397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE-----AAINDVYLAPLLQCLIEGLSAEPRVASNVC 471 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG-----GTSSTTTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch-----hcccHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 854567788999999999999999999999999999999998864 112457899999999999988899999999
Q ss_pred HHHHHHHHhhccC------C--CCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 002877 479 GAIYYLAQGYEDA------G--PSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAEL 550 (872)
Q Consensus 479 ~al~~l~~~~~~~------~--~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l 550 (872)
+++..+++.+... + ..+..+.||++.+++.+...+...+.++..+|..++++++.++...+ .+..+++..+
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~~~l 550 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA-KDCYPAVQKT 550 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC-STTHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc-hhhHHHHHHH
Confidence 9999999886310 0 11356889999999999999986544455779999999999999999 8899999999
Q ss_pred HHHHHHHHHHHHh--hhhcCcchhhhHHHHHHHHHHHHHHHHHHcC-CCccchhhchhhHHHHHHHHHHHHccCC--hhH
Q 002877 551 LPAIMGRLGQTLE--LQIVSSDDREKQGDLQASLCGVLQVIIQKFS-STDATKSFILQTADQIMVLFLRVFACRS--STV 625 (872)
Q Consensus 551 ~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~v 625 (872)
+|.+++.|...+. .+..+.+|+....+++..++.+++.++..++ . .+.||++.+++.++..+.+.. ..+
T Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ------DALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH------HHHTTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh------hhhHHHHHHHHHHHHHHHhccCCCCc
Confidence 9999999987532 1222344555567788999999999999999 7 889999999999999998764 478
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCC
Q 002877 626 HEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQ 705 (872)
Q Consensus 626 ~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 705 (872)
++.++.+++.++...+..+.+|++.++|.+...+.+.+++.+|..|+++++.++...+..+.||++.+++.+++.+.+++
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999998765677999999999999999999999999999999999998754
Q ss_pred CCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchh---
Q 002877 706 LNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSA--- 782 (872)
Q Consensus 706 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 782 (872)
.+.++|..++.++|+++..+|+.|.+|++.++|.+.+.+....+ .+|+|..+|...+|+.++.++.+++.+++..
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~--~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~ 782 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD--KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN 782 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 46789999999999999999999999999999999987754332 2356667787889999999999998887642
Q ss_pred ---hhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHH
Q 002877 783 ---RAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETA 859 (872)
Q Consensus 783 ---~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a 859 (872)
....+.||++.+++++...+.+++.++.+|..|+.++++++..+|.+....++.+.+++.++.+++.++++++|++|
T Consensus 783 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 783 VHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp CCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 12568899999999998876553237899999999999999999883344455678999999977899999999999
Q ss_pred HHHHHHHHHHhc
Q 002877 860 GWTQGMINRVLV 871 (872)
Q Consensus 860 ~~~~~~~~~~~~ 871 (872)
+||+|.++++=+
T Consensus 863 ~~a~~~~~~~~~ 874 (876)
T 1qgr_A 863 RWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999999998743
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.2e-62 Score=580.51 Aligned_cols=739 Identities=20% Similarity=0.315 Sum_probs=622.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVN-NEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
+++.++|++++|||+++|++|+++|++++++ |+|+..|..++.+ .+.++.+|++|++.|||.+.+ .
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~--p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~-----------~ 79 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQY--PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA-----------H 79 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT-----------S
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhC--CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH-----------c
Confidence 4689999999999999999999999999887 9999999999985 467899999999999999964 5
Q ss_pred hhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhh
Q 002877 82 WLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVC 161 (872)
Q Consensus 82 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 161 (872)
|..++++.+..||+.+++.|.++++.+|+.++.+++.|++.++| +.||++++.+.+.++++ ++..|++++.+++.++
T Consensus 80 w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 80 FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKIC 156 (852)
T ss_dssp GGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999977 59999999999999998 8899999999999999
Q ss_pred hccCccccc----hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHH
Q 002877 162 EEISHQDLV----QDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEI 237 (872)
Q Consensus 162 ~~~~~~~l~----~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 237 (872)
+... +.++ ...++.++|.+.+.+++ ++..||..|++++..++......+.. ..+.+++.+++.++++++++
T Consensus 157 ~~~~-~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~A~~aL~~~~~~~~~~~~~--~~~~~l~~l~~~~~d~~~~v 231 (852)
T 4fdd_A 157 EDSA-EILDSDVLDRPLNIMIPKFLQFFKH--SSPKIRSHAVACVNQFIISRTQALML--HIDSFIENLFALAGDEEPEV 231 (852)
T ss_dssp HHHT-THHHHCSSSSCHHHHHHHHTTTTTC--SSHHHHHHHHHHHHTTTTTTCHHHHT--SHHHHHHHHHHHHTCCCHHH
T ss_pred HHhH-HHhchhhhcchHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccHHHHH--HHHHHHHHHHHHcCCCCHHH
Confidence 9874 3321 23478899999999987 78999999999998766432111111 12347788888888999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHH
Q 002877 238 RQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEK 317 (872)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (872)
|..+++++..+++.+++.+.+|++.+++.++..+.+.++++|..|++||..+++... ..++.++
T Consensus 232 r~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~----------------~~~~~~~ 295 (852)
T 4fdd_A 232 RKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI----------------CKDVLVR 295 (852)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT----------------HHHHHTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh----------------HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987421 1345677
Q ss_pred hHHhhHHHHHHHHhcc-----------cCCcccCC--CCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcch
Q 002877 318 ARSSLVPMLLETLLKQ-----------EEDQDQDD--SIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRC 384 (872)
Q Consensus 318 ~l~~l~~~l~~~l~~~-----------~~d~~~d~--~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 384 (872)
+++.++|.++..|... ++|+++|+ ..|++|.+|..+++.++...|+.+.+.+++++.+.+.+++|+.
T Consensus 296 ~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~ 375 (852)
T 4fdd_A 296 HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVV 375 (852)
T ss_dssp THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHH
Confidence 8888999998888421 12222211 5699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHH
Q 002877 385 REAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLL 464 (872)
Q Consensus 385 r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 464 (872)
|++|+.+++.+++++. +.+.++++.++|.++..++|+++.||.+++|++++++++... .....++..+++.++
T Consensus 376 R~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 376 KESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS------QPPDTYLKPLMTELL 448 (852)
T ss_dssp HHHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH------SCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHH
Confidence 9999999999999985 677789999999999999999999999999999999998764 135678999999999
Q ss_pred HHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCccc
Q 002877 465 ESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITET 543 (872)
Q Consensus 465 ~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~ 543 (872)
..+.| ++.||.+|++++.++++.+ +..+.||++.+++.+...++..+ ......++++++.++...+ ..+
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~------~~~l~~~l~~ll~~L~~~l~~~~---~~~~~~~~~ai~~l~~~~~-~~~ 518 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEA------CTELVPYLAYILDTLVFAFSKYQ---HKNLLILYDAIGTLADSVG-HHL 518 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHH------GGGGGGGHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHG-GGG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHh------hHhhHhHHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhh-hhh
Confidence 99988 9999999999999999998 56689999999999999998554 2235678899999998777 443
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC
Q 002877 544 --SQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR 621 (872)
Q Consensus 544 --~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 621 (872)
.+|++.++|.+++.|... .++++ +++ .++++++.++..+|. .+.||++.+++.++..+...
T Consensus 519 ~~~~~~~~l~p~l~~~~~~l------~d~~~----~~~-~~~~~l~~i~~~~g~------~~~~~~~~i~~~~~~~l~~~ 581 (852)
T 4fdd_A 519 NKPEYIQMLMPPLIQKWNML------KDEDK----DLF-PLLECLSSVATALQS------GFLPYCEPVYQRCVNLVQKT 581 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHS------CTTCT----THH-HHHHHHHHHHHHHGG------GGHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc------ccccH----HHH-HHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHH
Confidence 679999999999987653 11222 122 678999999999999 89999999888777765431
Q ss_pred -----------------ChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHh
Q 002877 622 -----------------SSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 622 -----------------~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 682 (872)
+..++..++.+++.++...+.++.+|+ +.+++.+..++.+. .+.+|..++.+++.++..+
T Consensus 582 l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 582 LAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp HHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHHh
Confidence 456888899999999999999999998 78999999998764 4679999999999999999
Q ss_pred cCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHH
Q 002877 683 DDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGN 762 (872)
Q Consensus 683 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~ 762 (872)
+..+.+|++.+++.+.+.+..+ +.++|..++.++|.++...|+.+.+|++.+++.+...++... ...
T Consensus 661 ~~~~~~~l~~~lp~l~~~l~~~--~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~-----------~~~ 727 (852)
T 4fdd_A 661 FQHVKPCIADFMPILGTNLNPE--FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-----------TPK 727 (852)
T ss_dssp GGGTGGGHHHHHHHHHHTCCTT--SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS-----------CCH
T ss_pred hHHHHHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC-----------CCc
Confidence 9999999999999999999665 678899999999999999999999999999999999876411 113
Q ss_pred HHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchh
Q 002877 763 QLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTK 831 (872)
Q Consensus 763 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 831 (872)
.+++++..++..+... .+..+.||++.+++.+...+.... +.+.+..++..++.++...+....
T Consensus 728 ~~~~~a~~~igrl~~~----~~~~~~~~l~~~~~~~~~~l~~~~-d~~e~~~a~~~l~~li~~~p~~~~ 791 (852)
T 4fdd_A 728 TLLENTAITIGRLGYV----CPQEVAPMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMISVNPSGVI 791 (852)
T ss_dssp HHHHHHHHHHHHHHHH----CHHHHGGGHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHHHHHCGGGTG
T ss_pred hHHHHHHHHHHHHHHh----CHHHhCccHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHhChHhHH
Confidence 5677777777666554 344577999999998888776533 455688999999999999887544
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=9.2e-46 Score=442.66 Aligned_cols=676 Identities=13% Similarity=0.147 Sum_probs=500.7
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
+++.++|.+++|||+++| |+++|++++++ |+|+..|++++.+++.+.++|++|++.|||.+.++|.... .+
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~--p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~-----~~ 75 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLETQ--DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN-----GN 75 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHTS--TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS-----SC
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhcC--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcc-----cC
Confidence 469999999999999999 99999999887 9999999999988777899999999999999976654321 11
Q ss_pred hcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhh
Q 002877 83 LAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCE 162 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 162 (872)
..++++.+..||+.+++.+.++++.+|++++.+++.|+++++| +.||++++.|.+.++++ ++..+++++.++..+++
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSND--DMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSS--CTTHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 3799999999999999999888899999999999999999999 59999999999999887 77889999999999999
Q ss_pred ccCc-----cc-------cchhhHHHHHHHH---HhcccCCCCC-H------HHHHHHHHHHHHHHH-----HHHhhhhh
Q 002877 163 EISH-----QD-------LVQDEVNAVLTAV---VQGMNLAEHS-A------EVRLAATRALYNALD-----FALTNFQN 215 (872)
Q Consensus 163 ~~~~-----~~-------l~~~~~~~l~~~l---~~~l~~~~~~-~------~vr~~al~~l~~~~~-----~~~~~~~~ 215 (872)
.+.. +. + ..+.+.+++.+ .+.++++..+ . +++..+++++..+.. .+.+++..
T Consensus 153 ~~~~~~~~~~~~~~l~~~l-~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~ 231 (960)
T 1wa5_C 153 RWRPLFRSDELFLEIKLVL-DVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQV 231 (960)
T ss_dssp GGTTSCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHH
T ss_pred HHHHhhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 7631 11 1 11222222322 2235543222 1 233345555554321 11111221
Q ss_pred hhHHHHHHHHHHHhhc--------C-------CcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhc-----CCC
Q 002877 216 EMERNYIMKVVCETAK--------S-------KEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVK-----GDE 275 (872)
Q Consensus 216 ~~~~~~ll~~l~~~~~--------~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~-----~~~ 275 (872)
+++.+.+.+. + ..+.+++.+++++..+++.+++.+.+|++.+++.++..+. ..+
T Consensus 232 ------~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~ 305 (960)
T 1wa5_C 232 ------GMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKY 305 (960)
T ss_dssp ------HHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTS
T ss_pred ------HHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 2233333221 1 0136789999999999999999999999999888876654 356
Q ss_pred hHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHH--HHhHHhhH-HHHHHHHhcccCCcc--------------
Q 002877 276 EAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFI--EKARSSLV-PMLLETLLKQEEDQD-------------- 338 (872)
Q Consensus 276 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~-~~l~~~l~~~~~d~~-------------- 338 (872)
+.++..+++||..+++..... ..+ .++++.++ ++++..|...++|.+
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~----------------~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~ 369 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYF----------------EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDL 369 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHH----------------GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHH----------------HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhcc
Confidence 789999999999998754321 112 25666777 677777754322210
Q ss_pred cCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhcc------CCCcchHHHHHHHHHHhhcCCC-cc-chhH----
Q 002877 339 QDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIV------KSDWRCREAATYAFGSVLEGPT-ID-KLAP---- 406 (872)
Q Consensus 339 ~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~~~-~~-~~~~---- 406 (872)
++++.|++|.+|..+|+.++..+++.+.+.+++++.+.+. +++|+.|++|++++++++++.. .+ ....
T Consensus 370 e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~ 449 (960)
T 1wa5_C 370 EGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNL 449 (960)
T ss_dssp HC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTT
T ss_pred CcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence 1235579999999999999999998899999999888876 6789999999999999987531 11 1110
Q ss_pred -hHHh-HHHHHHHhcCCC---cHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHH
Q 002877 407 -LVHA-GFDFLLNAMRDE---NNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGA 480 (872)
Q Consensus 407 -~l~~-l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~a 480 (872)
.+.. +...++..+.|+ +|.||.+|+|++|++++++. .+++..+++.++..+.| ++.|+.+|+++
T Consensus 450 ~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~----------~~~l~~~l~~l~~~L~d~~~~V~~~A~~A 519 (960)
T 1wa5_C 450 LNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----------KAQLIELMPILATFLQTDEYVVYTYAAIT 519 (960)
T ss_dssp CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----------HHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 1222 233455566677 99999999999999998764 25899999999999998 89999999999
Q ss_pred HHHHHHhhc-----cCCCCCCCchhhHHHHHHHHHHhhccCCC--cchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 002877 481 IYYLAQGYE-----DAGPSSSLLSPYLTSIIAELLRAADRTDV--GGSKLRSAAYETLNEVVRCSNITETSQIIAELLPA 553 (872)
Q Consensus 481 l~~l~~~~~-----~~~~~~~~l~~~~~~il~~l~~~l~~~~~--~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~ 553 (872)
|.++++... ..+..+..+.||++.+++.++..++.... ........++++++.++...+ +.+.+|+..+++.
T Consensus 520 l~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~-~~~~p~~~~l~~~ 598 (960)
T 1wa5_C 520 IEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE-DSIQPLFPQLLAQ 598 (960)
T ss_dssp HHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT-TTTGGGHHHHHHH
T ss_pred HHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH-HhhhhHHHHHHHH
Confidence 999997532 01111456889999999999999985410 001124688999999999999 8899999999999
Q ss_pred HHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHH
Q 002877 554 IMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAI 633 (872)
Q Consensus 554 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l 633 (872)
+...+....+. .++ ..++..++++++.+++..+++ .+.++.+.+++.+...+........+.++..+
T Consensus 599 L~~~l~~~~~~----~~~----~~~~~~~~e~l~~l~~~~~~~-----~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 599 FIEIVTIMAKN----PSN----PRFTHYTFESIGAILNYTQRQ-----NLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp HHHHHHHHTTS----CCC----HHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHhC----CCC----cHHHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 99999875321 112 234567889999999885543 67778889999999999877778889999999
Q ss_pred HHHHHHhhhHHHhhhHHHHHHHH--hhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCc
Q 002877 634 GALAYATGPEFAKYMPEFYQYLQ--MGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVK 711 (872)
Q Consensus 634 ~~l~~~~~~~~~~~l~~i~~~l~--~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 711 (872)
+.+.... ..+.+++..++|.+. ..+.... .....+.++..++...++.+.. +..++..+.+.+.+. . .+
T Consensus 666 ~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~--~--~~ 736 (960)
T 1wa5_C 666 AFVVEQS-ATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK--A--YE 736 (960)
T ss_dssp HHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT--T--TH
T ss_pred HHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCC--c--cc
Confidence 9998877 678889999999998 6665432 3345667777777666655554 445555555555544 2 34
Q ss_pred hhHHHHHHHHHHhhccc-hhhhHHHHHHHHHHHHHh
Q 002877 712 PPILSCFGDIALAIGVH-FEKYVPHALQMMQEAAKA 746 (872)
Q Consensus 712 ~~~~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~~~~ 746 (872)
..++.+++.++..+|.. |.+|++.+++.++..++.
T Consensus 737 ~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~ 772 (960)
T 1wa5_C 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQN 772 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGS
T ss_pred chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999988 999999999999988764
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=8.3e-42 Score=411.96 Aligned_cols=736 Identities=14% Similarity=0.158 Sum_probs=534.4
Q ss_pred hHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 4 EITQFLLA-AQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 4 ~~~~~l~~-~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
++.++|+. ..++|++.|++|+++|++++++ |++|..+..+|.+ +.++++|++|+++|||.++ ..|
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~-----------~~w 90 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQAWHFSWQLLQP-DKVPEIQYFGASALHIKIS-----------RYW 90 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHH-----------HCG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHH-----------hCH
Confidence 37788888 5578999999999999999998 9999999999876 5789999999999999985 568
Q ss_pred hcCChHHHHHHHHHHHHhhcC---CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhcc-----CCccHHHHHHHH
Q 002877 83 LAIDISYKSQVKDLLLRTLAS---PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQ-----QDSLAALKQATL 154 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~-----~~~~~~~r~~al 154 (872)
..++++.+..||+.|++.+.+ .++.||++++.+++.|+++++|. .||++++.+.+.+++ + ++..++.++
T Consensus 91 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~~~~~~~--~~~~~~~~l 167 (963)
T 2x19_B 91 SDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQAEDSPVD--GQGRCLALL 167 (963)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC--------CHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHhhhccCCC--cHHHHHHHH
Confidence 899999999999999998865 36899999999999999999995 799999999999976 2 456789999
Q ss_pred HHHHHhhhccC------------ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhh---------
Q 002877 155 ETLGYVCEEIS------------HQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNF--------- 213 (872)
Q Consensus 155 ~~l~~l~~~~~------------~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~--------- 213 (872)
.+|..+++++. .+.+ ..+.+.+++.+.+.+.+......++..+++|+..|+. ++...
T Consensus 168 ~iL~~l~ee~~~~~~~~~~r~~~~~~l-~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~ 245 (963)
T 2x19_B 168 ELLTVLPEEFQTSRLPQYRKGLVRTSL-AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQA 245 (963)
T ss_dssp HHHHHHHHHHTTCCC---------CCS-GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHH
T ss_pred HHHHhCHHHHhcccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHH
Confidence 99999997541 1233 4567788888888887643333588888888866542 11000
Q ss_pred -----hhh--------------------hHHHH---HHHHHHH-------hhcCCcHHHHHHHHHHHHHHHHhhhhhhH-
Q 002877 214 -----QNE--------------------MERNY---IMKVVCE-------TAKSKEVEIRQAAFECLVSIASTYYEVLE- 257 (872)
Q Consensus 214 -----~~~--------------------~~~~~---ll~~l~~-------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~- 257 (872)
... ...+. +++.+.. .....+.+.....++++..+++.++..+.
T Consensus 246 l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~ 325 (963)
T 2x19_B 246 AFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLD 325 (963)
T ss_dssp HHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHc
Confidence 000 00011 1111111 12234556677788888888887776654
Q ss_pred -----HhHHHHHHHHHHHhcC-----CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHH
Q 002877 258 -----PYMQTLFELTSNAVKG-----DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLL 327 (872)
Q Consensus 258 -----~~l~~l~~~~~~~~~~-----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 327 (872)
+++..+++.++..... .+++++..+++||..+++........ .........++++..+++.++
T Consensus 326 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~-------~~~~~~~~~~~~l~~l~~~ll 398 (963)
T 2x19_B 326 QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAE-------KQAVYQQVYRPVYFQLVDVLL 398 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHHH
Confidence 5566777877766654 46778999999999998842210000 000012356788889999999
Q ss_pred HHHhcccCCc----c-cCCCCc-chhhhHHHHHHHHHhhcCCcchhchHHHHHhhc----cCCCcchHHHHHHHHHHhhc
Q 002877 328 ETLLKQEEDQ----D-QDDSIW-NISMAGGTCLGLVARTVGDEVVPLVMPFVEANI----VKSDWRCREAATYAFGSVLE 397 (872)
Q Consensus 328 ~~l~~~~~d~----~-~d~~~~-~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~i~~ 397 (872)
..+..+++++ + ||++.| ..|+++.++|..++...++.+++.+++.+.+.+ .+.+|+.|++++++++++++
T Consensus 399 ~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~ 478 (963)
T 2x19_B 399 HKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAE 478 (963)
T ss_dssp HHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence 9886543321 1 111223 568999999999999999888899999988887 67799999999999999999
Q ss_pred CCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhcChHHHHHH
Q 002877 398 GPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKDAPNVAEKV 477 (872)
Q Consensus 398 ~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a 477 (872)
++. +...++++.+++.+. .+.++++.||.+++|++|++++++.. ...+++.+++.++..+.+ +.|+..|
T Consensus 479 ~~~-~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~--------~~~~l~~vl~~l~~~l~~-~~V~~~A 547 (963)
T 2x19_B 479 TID-VNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLAD--------HPVMINSVLPLVLHALGN-PELSVSS 547 (963)
T ss_dssp SCC-SSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHH--------CHHHHTTTHHHHHHHTTC-GGGHHHH
T ss_pred hcC-chhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHhCC-chHHHHH
Confidence 986 455567778888544 45667999999999999999998864 347889999999999874 8999999
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q 002877 478 CGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGR 557 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~ 557 (872)
+.+|..+++.+ +..+.||++.+++.+...+.+.+ -....+..++++++.++...+.+...+|+..+++++.+.
T Consensus 548 ~~al~~l~~~~------~~~l~p~~~~il~~l~~~l~~~~-~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 548 VSTLKKICREC------KYDLPPYAANIVAVSQDVLMKQI-HKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp HHHHHHHHHHT------GGGCTTTHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHhhHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999988 67789999999999999887533 234568999999999998775256889999999999999
Q ss_pred HHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCcc----------------chhhchhhHHHHHHHHHHHHccC
Q 002877 558 LGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDA----------------TKSFILQTADQIMVLFLRVFACR 621 (872)
Q Consensus 558 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----------------~~~~~~~~~~~l~~~l~~~l~~~ 621 (872)
|.+..+.. .+ ......+...+.+++.+++.++.... ....+.++.+.+++.+..++...
T Consensus 621 l~~~~~~~----~~-~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 695 (963)
T 2x19_B 621 LEKLAEEI----PN-PSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695 (963)
T ss_dssp HHHHHSSC----SC-HHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC----CC-HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 98764321 11 11122345677888888888874210 11235557778888887777543
Q ss_pred --ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc--CCccccHHHHHHHH
Q 002877 622 --SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD--DKVLPFCDGIMSLL 697 (872)
Q Consensus 622 --~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l 697 (872)
+..+.+.++.+++.++...++.+.||++.+++.+......... ...+.+++.++..++ +.+.+++..++..+
T Consensus 696 ~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~ 771 (963)
T 2x19_B 696 LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLV 771 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 5789999999999999999999999999999998876665322 245677777877444 34556665555544
Q ss_pred H----HHhc-CCCCCCCCchhHHHHHHHHHHhhccchh--hh-HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHH
Q 002877 698 L----NALS-NSQLNRSVKPPILSCFGDIALAIGVHFE--KY-VPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIF 769 (872)
Q Consensus 698 ~----~~l~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~-l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 769 (872)
+ +.++ +...+++++...+..++.+...++..+. +. +..+++.+...++.. + .....+++
T Consensus 772 ~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~------~-------~~~~~~~l 838 (963)
T 2x19_B 772 TSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFP------E-------APTVKASC 838 (963)
T ss_dssp HHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCS------C-------HHHHHHHH
T ss_pred HHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC------C-------HHHHHHHH
Confidence 4 3343 2222578999999999999998876653 44 777887777776531 1 23445566
Q ss_pred HHHHhHhhccch--hhhhhhhhhHHHHHHHHHHHhcCC
Q 002877 770 EAYSGILQGFKS--ARAEVMMPYAQHLLQFIELIFKDN 805 (872)
Q Consensus 770 ~~~~~~~~~l~~--~~~~~~~~~~~~il~~l~~~~~~~ 805 (872)
..+..++...+. ....-+.++...++..+...+.+.
T Consensus 839 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 876 (963)
T 2x19_B 839 GFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQ 876 (963)
T ss_dssp HHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666666654331 122334566677776666555543
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=5.9e-44 Score=395.16 Aligned_cols=457 Identities=42% Similarity=0.692 Sum_probs=387.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
|++.++|.+++|||+++|++|+++|+++++++.|+|+..|++++.+++.++.+|++|+++|||.+.++|..........|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 68999999999999999999999999998855699999999999986668999999999999999999987666666789
Q ss_pred hcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhh
Q 002877 83 LAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCE 162 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 162 (872)
..++++.+..||+.|++.+.++++.+ +.++.+++.|+++++|.+.|+++++.+.+.+++++.++..|++++.+|+.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998889 99999999999999886689999999999998751146789999999999999
Q ss_pred ccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHH
Q 002877 163 EISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAF 242 (872)
Q Consensus 163 ~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 242 (872)
...++.+ ..+.+.+++.+.+.+.+.+++..||..|+++++.++.++..++..+...+++++.+.+.+.++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8755666 788899999999999985337999999999999988776655544444566788888888889999999999
Q ss_pred HHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC--CCCC-CCCCCchHHHHHh
Q 002877 243 ECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN--PETG-DSDSPNYHFIEKA 318 (872)
Q Consensus 243 ~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~ 318 (872)
+++..++..+++.+.+++. .+++.++..+.+.+++++..+++||..+++.......... ...+ ...+....+.+++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 9999999999999999999 9999998888999999999999999999886432211100 0011 0012234467778
Q ss_pred HHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcC
Q 002877 319 RSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEG 398 (872)
Q Consensus 319 l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~ 398 (872)
++.++|.++..+...++|++++ .|++|.+|..+|+.++..+|+.+.+.+++.+.+.+.+++|+.|++++.+++.++++
T Consensus 319 ~~~l~p~l~~~l~~~d~d~~~~--~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTT--CCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred hhhccHHHHHHHHhcccccccc--cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 8899999999887665544444 49999999999999999999999999999999999999999999999999999998
Q ss_pred CCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh
Q 002877 399 PTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK 468 (872)
Q Consensus 399 ~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 468 (872)
+.++.+.++++.++|.++..+.|+++.||.+|+|++++++++... .....++++.+++.|+..++
T Consensus 397 ~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~-----~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE-----AAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG-----GCCSTTTHHHHHHHHHCC--
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc-----ccccHHHHHHHHHHHHHHhc
Confidence 754567778899999999999999999999999999999998875 11235789999999887664
No 7
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=3.5e-42 Score=415.08 Aligned_cols=755 Identities=12% Similarity=0.143 Sum_probs=525.6
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
.++.++|+++.+|+++.|++|+++|++++++ |++|..+.++|.+ +.++.+|++|+++|||.+. ..|
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~-----------~~W 81 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLIT-----------RKW 81 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--TTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHH-----------HTG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHH-----------hhC
Confidence 3688999999999999999999999999998 8999999999987 4589999999999999985 578
Q ss_pred hcCChHHHHHHHHHHHHhhcCC---------ChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHH
Q 002877 83 LAIDISYKSQVKDLLLRTLASP---------VPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQAT 153 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~---------~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~a 153 (872)
..++++.+..||+.+++.+.+. ++.+|++++.+++.|+++++| +.||++++.+.+.++ . ++..++.+
T Consensus 82 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~--~~~~~~~~ 157 (1049)
T 3m1i_C 82 KLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-S--SVNVCENN 157 (1049)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-T--CHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-c--ChHHHHHH
Confidence 8999999999999999987753 378999999999999999999 599999999999997 4 56678899
Q ss_pred HHHHHHhhhccC---c------------cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 002877 154 LETLGYVCEEIS---H------------QDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEME 218 (872)
Q Consensus 154 l~~l~~l~~~~~---~------------~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 218 (872)
+.+|..+++++. . +.+ ..+++.+++.+.+.+.+. ++..++..+++|+.+++.+.+.+...+
T Consensus 158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l-~~~~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~~~~~~~-- 233 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSM-SKEFEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIPYRYIYE-- 233 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCTHHHHS--
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCHHHHhh--
Confidence 999999887652 1 123 345677788888888764 467899999999988766543211000
Q ss_pred HHHHHHHHHHh--------------------------------------------------------------hcCCcHH
Q 002877 219 RNYIMKVVCET--------------------------------------------------------------AKSKEVE 236 (872)
Q Consensus 219 ~~~ll~~l~~~--------------------------------------------------------------~~~~~~~ 236 (872)
+.+++.+++. ..+.+.+
T Consensus 234 -~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~ 312 (1049)
T 3m1i_C 234 -TNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQS 312 (1049)
T ss_dssp -SSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHH
T ss_pred -hhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHH
Confidence 0011111110 0122334
Q ss_pred HHHHHHHHHHHHHHhhhhh------hHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCC
Q 002877 237 IRQAAFECLVSIASTYYEV------LEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSP 310 (872)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~------~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 310 (872)
.....++++..++..+... +.+++..++++++.....++++++..+++||..+++.... . ..
T Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~-~-----------~~ 380 (1049)
T 3m1i_C 313 FLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY-E-----------PL 380 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-S-----------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh-c-----------hh
Confidence 4445555555555544333 2455666778887777777889999999999999984210 0 00
Q ss_pred chHHHHHhHHhhHHHHHHHHhcccCCc----c---------cCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhc
Q 002877 311 NYHFIEKARSSLVPMLLETLLKQEEDQ----D---------QDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANI 377 (872)
Q Consensus 311 ~~~~~~~~l~~l~~~l~~~l~~~~~d~----~---------~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l 377 (872)
.....++++..+++.++..|..+++++ + +|++.|+.|+++.++|..++...+..+++.+.+.+.+.+
T Consensus 381 ~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l 460 (1049)
T 3m1i_C 381 KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQI 460 (1049)
T ss_dssp CGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 123456788899999999887654321 0 122346788899999999998888888899999998887
Q ss_pred cC--CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHhhccCCCCCccc
Q 002877 378 VK--SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR-----DENNHVKDTTAWTLSRIFELLHCPATGFSV 450 (872)
Q Consensus 378 ~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
.+ .+|+.|+++++++|++++++....-.++++.+++.+..... |+++.||.+++|++|++++++..
T Consensus 461 ~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~------- 533 (1049)
T 3m1i_C 461 DGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA------- 533 (1049)
T ss_dssp TSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH-------
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh-------
Confidence 63 68999999999999999887522233457888888777542 47888888999999999999874
Q ss_pred cCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC--CCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHH
Q 002877 451 ISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA--GPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAA 527 (872)
Q Consensus 451 ~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 527 (872)
...+++.+++.++..+.+ +++|+.+||++|.++++.++.. ...++.+.||++.++..+...+...+. . -...+
T Consensus 534 -~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~--~-~~~~~ 609 (1049)
T 3m1i_C 534 -HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP--Q-QVHTF 609 (1049)
T ss_dssp -CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH--H-HHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCH--H-HHHHH
Confidence 457899999999999998 8999999999999999987411 012344469999999999998886442 2 26788
Q ss_pred HHHHHHHHhcCCC-cccHHHHHHHHHHHHHHHHHHHhhhhcCcchhh---hHHHHHHHHHHHHHHHHHHcCCCccchhhc
Q 002877 528 YETLNEVVRCSNI-TETSQIIAELLPAIMGRLGQTLELQIVSSDDRE---KQGDLQASLCGVLQVIIQKFSSTDATKSFI 603 (872)
Q Consensus 528 ~~al~~l~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 603 (872)
+++++.++...+. +...+++..+++++.+.|.+.+.....+.++.. ....+ ...+.++..+++.+|. .+
T Consensus 610 ~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~l~~~~~~~~~l~~------~f 682 (1049)
T 3m1i_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII-ANIIKTNVAVCTSMGA------DF 682 (1049)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHH-HHHHHHHHHHHHHHGG------GG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHH-HHHHHHHHHHHHHhhH------HH
Confidence 9999999998871 357889999999999999987655433322221 11222 4567788999999999 88
Q ss_pred hhhHHHHHHHHHHHHccCC-----------------h--hHHHHHHHHHHHHHHHh-------hhHHHhhhHHHHHHHHh
Q 002877 604 LQTADQIMVLFLRVFACRS-----------------S--TVHEEAMLAIGALAYAT-------GPEFAKYMPEFYQYLQM 657 (872)
Q Consensus 604 ~~~~~~l~~~l~~~l~~~~-----------------~--~v~~~a~~~l~~l~~~~-------~~~~~~~l~~i~~~l~~ 657 (872)
.|+++.++..++..+.... + ...+.....+..+.... +..+.+|++.++..+..
T Consensus 683 ~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~ 762 (1049)
T 3m1i_C 683 YPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLE 762 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 8888777766554433210 0 01111122222222211 22345666777766665
Q ss_pred hhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh-----cCCCCCCCCchhHHHHHHHHHHhhccchhhh
Q 002877 658 GLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNAL-----SNSQLNRSVKPPILSCFGDIALAIGVHFEKY 732 (872)
Q Consensus 658 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 732 (872)
.........-...++.+++.++..+|+.+.+|++.+++.++... ++.+..++++...+..++++...+...+.+.
T Consensus 763 ~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~ 842 (1049)
T 3m1i_C 763 DYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL 842 (1049)
T ss_dssp HHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHS
T ss_pred HHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcC
Confidence 54321000001357888999999999889999998888877653 2223367899999999999999887766542
Q ss_pred ----HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccch----hhh-hhhhhhHHHHHHHHHHHhc
Q 002877 733 ----VPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKS----ARA-EVMMPYAQHLLQFIELIFK 803 (872)
Q Consensus 733 ----l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~~~~~~~~il~~l~~~~~ 803 (872)
+..+++....++.+. + .....+++..+..++..... ... .-+..|...++..+...+.
T Consensus 843 ~~~~~~~v~~~~~~al~~~------~-------~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~ 909 (1049)
T 3m1i_C 843 PPAAFKLFVDAICWAFKHN------N-------RDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLT 909 (1049)
T ss_dssp CHHHHHHHHHHHHHHHTCC------S-------HHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC------C-------chHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444321 1 23445566666665554432 111 1233455566666655555
Q ss_pred CCCCCHhHHHHHHHHHHHHHh
Q 002877 804 DNHRDENVTKAAVAVMGDLAD 824 (872)
Q Consensus 804 ~~~~~~~~~~~a~~~l~~l~~ 824 (872)
++. +..--.....+|..+..
T Consensus 910 ~~~-h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 910 DSD-HKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp STT-CGGGHHHHHHHHHHHHH
T ss_pred cch-HhhhHHHHHHHHHHHHH
Confidence 543 33333344555555543
No 8
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=5.4e-43 Score=421.52 Aligned_cols=694 Identities=12% Similarity=0.146 Sum_probs=490.3
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
.++.++|+.+.+||++.|++|+++|++++++ |++|..+.++|.. +.++++|++|+++|||.++ ..|
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~--p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~-----------~~w 72 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS--PQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLM-----------KHW 72 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS--THHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHH-----------HCG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHH-----------ccH
Confidence 3577889899999999999999999999998 9999999999976 4689999999999999985 568
Q ss_pred hcCChHHHHHHHHHHHHhhcC---CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCC----ccHHHHHHHHH
Q 002877 83 LAIDISYKSQVKDLLLRTLAS---PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQD----SLAALKQATLE 155 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~----~~~~~r~~al~ 155 (872)
..++++.+..+|+.+++.+.+ .++.||++++.+++.|+++++| .|+++++.+.+.+++++ .++..++.++.
T Consensus 73 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 150 (971)
T 2x1g_F 73 HEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLE 150 (971)
T ss_dssp GGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHH
Confidence 899999999999999998765 2689999999999999999999 89999999999987630 03567899999
Q ss_pred HHHHhhhccC---c--------cccchhhHHHHHHHHHhcccCCCCC------HHHHHHHHHHHHHHHHH--HHhh----
Q 002877 156 TLGYVCEEIS---H--------QDLVQDEVNAVLTAVVQGMNLAEHS------AEVRLAATRALYNALDF--ALTN---- 212 (872)
Q Consensus 156 ~l~~l~~~~~---~--------~~l~~~~~~~l~~~l~~~l~~~~~~------~~vr~~al~~l~~~~~~--~~~~---- 212 (872)
+|..+++++. + +.+ ..+.+.+++.+.+.+.+...+ ..++..+++|+..++.+ ++..
T Consensus 151 iL~~l~EEi~~~~~~~~r~~~~~~l-~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ 229 (971)
T 2x1g_F 151 VLTAIPEEAQVIHTSVKRVVLRAEI-AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVT 229 (971)
T ss_dssp HHHHHHHHHHHCCCSSCHHHHHHHH-HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHH
T ss_pred HHHHhHHHHhccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcccccc
Confidence 9999997531 0 122 344566777666666542111 27889999999886652 1100
Q ss_pred -------h------------------hhhhH--------------------HHH---HHHHHHH-------hhcCCc---
Q 002877 213 -------F------------------QNEME--------------------RNY---IMKVVCE-------TAKSKE--- 234 (872)
Q Consensus 213 -------~------------------~~~~~--------------------~~~---ll~~l~~-------~~~~~~--- 234 (872)
+ ..... .+. +++.+.. ...+.+
T Consensus 230 ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~ 309 (971)
T 2x1g_F 230 ITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDN 309 (971)
T ss_dssp HHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSC
T ss_pred HHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccc
Confidence 0 00000 000 1111111 123334
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhH-----------HhHHHHHHHHHHHhc-----CCChHHHHHHHHhHhHHhHhhhhhhh
Q 002877 235 VEIRQAAFECLVSIASTYYEVLE-----------PYMQTLFELTSNAVK-----GDEEAVALQAVEFWSSICDEEIELQE 298 (872)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~-----------~~l~~l~~~~~~~~~-----~~~~~~~~~al~~l~~l~~~~~~~~~ 298 (872)
++.....++++..+++.++..+. +++..+++.++.... ..+++++..+++||..+++.......
T Consensus 310 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~ 389 (971)
T 2x1g_F 310 EDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN 389 (971)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 37777888999888877766554 456667777666543 25788999999999999874221100
Q ss_pred hcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcc-c-----CCCCcchhhhHHHHHHHHHhhcCCcchhchHHH
Q 002877 299 FENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQD-Q-----DDSIWNISMAGGTCLGLVARTVGDEVVPLVMPF 372 (872)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~-~-----d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 372 (872)
+ ..........++++..+++.++..+..+++++. + +++..+.|+++.+++..++...|+.+++.+++.
T Consensus 390 ~------~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~ 463 (971)
T 2x1g_F 390 D------EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAM 463 (971)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred c------cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 0 000112345678888999999988865432211 0 011236789999999999999999999999999
Q ss_pred HHhhccC-----CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhccCCC
Q 002877 373 VEANIVK-----SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR--DENNHVKDTTAWTLSRIFELLHCPA 445 (872)
Q Consensus 373 l~~~l~~-----~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
+.+.+.+ .+|+.|++++++++++++++. +...++++.+++ ++..+. |+++.||.+++|++|++++++..
T Consensus 464 l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~-~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-- 539 (971)
T 2x1g_F 464 LDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG-GEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLME-- 539 (971)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhc--
Confidence 8888765 789999999999999999986 555667888888 444454 67999999999999999999875
Q ss_pred CCccccCcccHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHH
Q 002877 446 TGFSVISPENLQRILTVLLESIKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRS 525 (872)
Q Consensus 446 ~~~~~~~~~~~~~~l~~l~~~l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~ 525 (872)
...+++.+++.++..+ + ++|+.+|++++..+++.+ +..+.||++.++..+...+.+.+. ....+.
T Consensus 540 ------~~~~l~~vl~~l~~~l-~-~~v~~~A~~al~~l~~~~------~~~l~p~~~~ll~~l~~~l~~~~~-~~~~~~ 604 (971)
T 2x1g_F 540 ------NPAYIPPAINLLVRGL-N-SSMSAQATLGLKELCRDC------QLQLKPYADPLLNACHASLNTGRM-KNSDSV 604 (971)
T ss_dssp ---------CHHHHHHHHHHHH-H-SSCHHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHSTTS-CHHHHH
T ss_pred ------CHHHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHHH------HHhccccHHHHHHHHHHHHcCCCC-ChHHHH
Confidence 3479999999999998 4 899999999999999988 677899999999999999985332 245689
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCc--cc----
Q 002877 526 AAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTD--AT---- 599 (872)
Q Consensus 526 ~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~---- 599 (872)
.++++++.++...+.++..+|+..+++++++.|.+..+....+.++ ..-....+..++.+++.++... ..
T Consensus 605 ~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~----~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~ 680 (971)
T 2x1g_F 605 RLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA----RIRTIFRLNMISTLFSSLNTDVDEQATDQP 680 (971)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHH----HHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh----HHHHHHHHHHHHHHHhhcCCCcCccccccc
Confidence 9999999999876536778999999999999998875432111111 1122345566677777665420 00
Q ss_pred -hhhchhhHHHHHHHHHHHHccC--ChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHH
Q 002877 600 -KSFILQTADQIMVLFLRVFACR--SSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVG 676 (872)
Q Consensus 600 -~~~~~~~~~~l~~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 676 (872)
...+.++.+.+++.+...+... +..+.+.++.+++.++...++.+.||++.+++.+...+.+... ..++++++
T Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~----~~~l~l~~ 756 (971)
T 2x1g_F 681 IVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC----APTLEISK 756 (971)
T ss_dssp ---CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC----HHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc----hHHHHHHH
Confidence 2256778888999888888654 5689999999999999999999999999999999988876432 34788888
Q ss_pred HHHHHhcCC--cc----ccHHHHHHHHHHHhcCC-----CCCCCCchhHHHHHHHHHHhhccchh--hh-HHHHHHHHHH
Q 002877 677 DVCRALDDK--VL----PFCDGIMSLLLNALSNS-----QLNRSVKPPILSCFGDIALAIGVHFE--KY-VPHALQMMQE 742 (872)
Q Consensus 677 ~l~~~~~~~--~~----~~~~~i~~~l~~~l~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~~--~~-l~~i~~~l~~ 742 (872)
.++..+|.. .. ..+..+...++..+... +.+++++...+..++++....+..+. +. ++.+++....
T Consensus 757 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~ 836 (971)
T 2x1g_F 757 TAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQR 836 (971)
T ss_dssp HHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHH
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHH
Confidence 888887753 33 34444445555555542 11567889999999999998887765 66 8888888888
Q ss_pred HHHh
Q 002877 743 AAKA 746 (872)
Q Consensus 743 ~~~~ 746 (872)
.+..
T Consensus 837 ~l~~ 840 (971)
T 2x1g_F 837 GMTL 840 (971)
T ss_dssp HHTS
T ss_pred HcCC
Confidence 7663
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8.9e-41 Score=396.45 Aligned_cols=728 Identities=13% Similarity=0.156 Sum_probs=556.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHH
Q 002877 6 TQFLLAAQSADANIRNEAEANLRQLQQQNL--------PGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKED 77 (872)
Q Consensus 6 ~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~ 77 (872)
.+++....+.+..+|..|-..|+...+..+ ...-..+++.+.+ .++.+|..++..+.......+
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~--~~~~vr~~~a~~i~~ia~~~~------ 122 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD--SSPLIRATVGILITTIASKGE------ 122 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcC------
Confidence 344554467789999999999987654322 1223445555543 568999999999988765322
Q ss_pred HHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCC-------CCchHHHHHHHHhhccCCccHHHH
Q 002877 78 LAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQ-------KQWPELIRSLLNNMTQQDSLAALK 150 (872)
Q Consensus 78 ~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~-------~~~~~ll~~l~~~l~~~~~~~~~r 150 (872)
...|+. +.+.|++.+.++++.+|..+..+++.++....+. ..+..+++.+.+.++++ ++.+|
T Consensus 123 -~~~wp~--------ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vR 191 (852)
T 4fdd_A 123 -LQNWPD--------LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS--SPKIR 191 (852)
T ss_dssp -TTTCTT--------HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS--SHHHH
T ss_pred -ccccHH--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC--CHHHH
Confidence 235643 4567778888889999999999999998764221 13678999999999988 89999
Q ss_pred HHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh
Q 002877 151 QATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETA 230 (872)
Q Consensus 151 ~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 230 (872)
..|+.++..++... ++.+ ..+++.+++.+...+.+ ++..+|..++++|..++......+... .+.+++.+...+
T Consensus 192 ~~A~~aL~~~~~~~-~~~~-~~~~~~~l~~l~~~~~d--~~~~vr~~a~~~L~~l~~~~~~~~~~~--l~~l~~~l~~~~ 265 (852)
T 4fdd_A 192 SHAVACVNQFIISR-TQAL-MLHIDSFIENLFALAGD--EEPEVRKNVCRALVMLLEVRMDRLLPH--MHNIVEYMLQRT 265 (852)
T ss_dssp HHHHHHHHTTTTTT-CHHH-HTSHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHCHHHHGGG--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-cHHH-HHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHhCHHHHHHH--HHHHHHHHHHHc
Confidence 99999998877654 3334 55677889999988887 789999999999999887544333221 123777778888
Q ss_pred cCCcHHHHHHHHHHHHHHHHh--hhhhhHHhHHHHHHHHHHHh-----------cC-----------CChHHHHHHHHhH
Q 002877 231 KSKEVEIRQAAFECLVSIAST--YYEVLEPYMQTLFELTSNAV-----------KG-----------DEEAVALQAVEFW 286 (872)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~l~~l~~~~~~~~-----------~~-----------~~~~~~~~al~~l 286 (872)
++.++.+|..++++|..+++. ..+.+.+++..+++.++..+ .+ .+..+|..|...+
T Consensus 266 ~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L 345 (852)
T 4fdd_A 266 QDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAAL 345 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHH
Confidence 889999999999999998763 23445677778888777665 22 1224677888888
Q ss_pred hHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC---
Q 002877 287 SSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD--- 363 (872)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~--- 363 (872)
..++.... ...++.++|.+...+.. ..|.+|.+|..+++.++...++
T Consensus 346 ~~la~~~~---------------------~~~~~~l~~~l~~~l~~---------~~~~~R~aa~~alg~i~~~~~~~~~ 395 (852)
T 4fdd_A 346 DVLANVYR---------------------DELLPHILPLLKELLFH---------HEWVVKESGILVLGAIAEGCMQGMI 395 (852)
T ss_dssp HHHHHHHG---------------------GGGHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred HHHHHhcc---------------------HHHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcchHHHH
Confidence 87776522 22345566776666542 1299999999999999887653
Q ss_pred cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 364 EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 364 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
...+.+++.+...+.|+++.+|.+++.+++.+++...+....+++..+++.+++.+.|+++.||..|+++++.+++....
T Consensus 396 ~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 396 PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 35567888999999999999999999999999876533345668889999999999999999999999999999988775
Q ss_pred CCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCc--hhhHHHHHHHHHHhhccCCCcc
Q 002877 444 PATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLL--SPYLTSIIAELLRAADRTDVGG 520 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l--~~~~~~il~~l~~~l~~~~~~~ 520 (872)
...+|++.+++.|+..+.+ +.+....+..+++.+++..+ ..+ .+|++.++|.++...+...+..
T Consensus 476 -------~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~------~~~~~~~~~~~l~p~l~~~~~~l~d~~ 542 (852)
T 4fdd_A 476 -------ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG------HHLNKPEYIQMLMPPLIQKWNMLKDED 542 (852)
T ss_dssp -------GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHG------GGGCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred -------hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhh------hhhccHHHHHHHHHHHHHHHHhccccc
Confidence 4577999999999999987 66666677888888888763 222 4699999999987654333333
Q ss_pred hhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcch----hhhHHHHHHHHHHHHHHHHHHcCCC
Q 002877 521 SKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDD----REKQGDLQASLCGVLQVIIQKFSST 596 (872)
Q Consensus 521 ~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~ 596 (872)
..++ .++++++.++...+ ..+.+|++.+++.++..+.+.+........+ .....+++..++.+++.+++.+|.
T Consensus 543 ~~~~-~~~~~l~~i~~~~g-~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~- 619 (852)
T 4fdd_A 543 KDLF-PLLECLSSVATALQ-SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG- 619 (852)
T ss_dssp TTHH-HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG-
T ss_pred HHHH-HHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH-
Confidence 4444 89999999999999 8999999999999999888765321110000 011234678889999999999998
Q ss_pred ccchhhchhhH--HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHH
Q 002877 597 DATKSFILQTA--DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGV 674 (872)
Q Consensus 597 ~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~ 674 (872)
.+.+|+ +.+++.++.++.+..+.+|+.++.+++.++..++..+.+|++.++|.+.+.+.. ++++++..|+++
T Consensus 620 -----~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~-~~~~v~~~a~~a 693 (852)
T 4fdd_A 620 -----NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP-EFISVCNNATWA 693 (852)
T ss_dssp -----GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT-TSHHHHHHHHHH
T ss_pred -----hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc-cchHHHHHHHHH
Confidence 889987 689999999999888999999999999999999999999999999999999954 457899999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCc
Q 002877 675 VGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMED 754 (872)
Q Consensus 675 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d 754 (872)
+|.++...+..+.||+..+++.+++.+++++.+..++++++.++|+++...++.+.+|++.+++.++..+....+.
T Consensus 694 lg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~---- 769 (852)
T 4fdd_A 694 IGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDN---- 769 (852)
T ss_dssp HHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSS----
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcccccc----
Confidence 9999999999999999999999999999876667899999999999999988878899999999999998753221
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcc
Q 002877 755 EELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPN 829 (872)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 829 (872)
+.|+.+...+..++.. .+....+.+..+...+... . +..++++.....++...-..+|++
T Consensus 770 --------~e~~~a~~~l~~li~~----~p~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~l~~~~~~~~~~ 829 (852)
T 4fdd_A 770 --------EEKDSAFRGICTMISV----NPSGVIQDFIFFCDAVASW-I--NPKDDLRDMFCKILHGFKNQVGDE 829 (852)
T ss_dssp --------HHHHHHHHHHHHHHHH----CGGGTGGGHHHHHHHHHTC-S--SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHh----ChHhHHHHHHHHHHHHHhc-C--CCCHHHHHHHHHHHHHHHHhCCch
Confidence 3466666666655554 2334555555555555432 2 356778887777776655555543
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1e-39 Score=382.21 Aligned_cols=728 Identities=12% Similarity=0.119 Sum_probs=500.1
Q ss_pred chHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC-ChhHHHHHHHHHhhcccCCcccchHHHH
Q 002877 3 MEITQFLLAAQSA--DANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEK-PTESRRLAGIMLKNSLDAKDATTKEDLA 79 (872)
Q Consensus 3 ~~~~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~-~~~vr~~a~~~l~~~i~~~~~~~~~~~~ 79 (872)
.++.++++.+++| |++.|++|+++|++++++ |++|..+..+|.+++. ++.+|++|+++|++.++
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----------- 72 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----------- 72 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-----------
Confidence 4689999888888 699999999999999998 8999999999987543 89999999999998772
Q ss_pred hhhhcCChH----HHHHHHHHHHHhhcC-----CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccH-HH
Q 002877 80 KQWLAIDIS----YKSQVKDLLLRTLAS-----PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLA-AL 149 (872)
Q Consensus 80 ~~w~~l~~~----~~~~i~~~Ll~~l~~-----~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~-~~ 149 (872)
.++++ .+..+|+.++..+.. .++.||++++.+++.++.++||. .||++++.+++.++++ +. ..
T Consensus 73 ----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~--~~~~~ 145 (980)
T 3ibv_A 73 ----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAAS--SQSEF 145 (980)
T ss_dssp ----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHH--CCHHH
T ss_pred ----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCC--ChhHH
Confidence 57888 999999999987763 45889999999999999999995 9999999999999875 33 34
Q ss_pred HHHHHHHHHHhhhccCcc-----------------ccchhhHHHHHHHHHhcccC--CCCCHHHHHHHHHHHHHHHHHHH
Q 002877 150 KQATLETLGYVCEEISHQ-----------------DLVQDEVNAVLTAVVQGMNL--AEHSAEVRLAATRALYNALDFAL 210 (872)
Q Consensus 150 r~~al~~l~~l~~~~~~~-----------------~l~~~~~~~l~~~l~~~l~~--~~~~~~vr~~al~~l~~~~~~~~ 210 (872)
....+.+|..+.+++... .+....++.+++.++..+.. ...+..++..+++|+.+++.|++
T Consensus 146 ~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~ 225 (980)
T 3ibv_A 146 SNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN 225 (980)
T ss_dssp HHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Confidence 556677777666775310 01001133345555544432 11467899999999999987754
Q ss_pred hhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhh-------------------------------------
Q 002877 211 TNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYY------------------------------------- 253 (872)
Q Consensus 211 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------------------------------------- 253 (872)
.+.... +.+++.+++.+.+ +++|..|++|+..++....
T Consensus 226 ~~~i~~---~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L 300 (980)
T 3ibv_A 226 INLIVN---EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKL 300 (980)
T ss_dssp HHHHHC---HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHH
T ss_pred HHhhhc---chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHH
Confidence 332111 2255555555542 5566666666655543211
Q ss_pred ---------h--------------hhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCC
Q 002877 254 ---------E--------------VLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSP 310 (872)
Q Consensus 254 ---------~--------------~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 310 (872)
. ...+++..+++.++....++++++...+++||..+.+....... ...
T Consensus 301 ~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~---------~~~ 371 (980)
T 3ibv_A 301 INAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS---------SKE 371 (980)
T ss_dssp HHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT---------SCC
T ss_pred HHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc---------ccc
Confidence 0 01134456677778888888999999999999998875332110 000
Q ss_pred chHHHHHhHHhhHHHHHHHHhcccCCccc-----CC--CCcchhhhHHHHHHHHHhhcCCcchh----chHHHHHhhcc-
Q 002877 311 NYHFIEKARSSLVPMLLETLLKQEEDQDQ-----DD--SIWNISMAGGTCLGLVARTVGDEVVP----LVMPFVEANIV- 378 (872)
Q Consensus 311 ~~~~~~~~l~~l~~~l~~~l~~~~~d~~~-----d~--~~~~~r~~a~~~l~~l~~~~~~~~~~----~l~~~l~~~l~- 378 (872)
.....+++++.+++.++..+.++++++.+ |+ +.-..|+.....++.++...++.+++ .+.+.+.+.+.
T Consensus 372 ~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 372 LSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 12345788899999999999876542211 11 12257777774444444444567777 66667766653
Q ss_pred --CCCcchHHHHHHHHHHhhcCCCccc-----hhHhHHhHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHhhccCCCC
Q 002877 379 --KSDWRCREAATYAFGSVLEGPTIDK-----LAPLVHAGFDFLLNAMR-----DENNHVKDTTAWTLSRIFELLHCPAT 446 (872)
Q Consensus 379 --~~~~~~r~aal~~l~~i~~~~~~~~-----~~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (872)
+.+|+.+|+++++++.+++++.... ..+.++.+++.+...++ +++|.||.++++++|++++|+..
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~--- 528 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY--- 528 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT---
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc---
Confidence 3579999999999999999985211 12345566677766654 89999999999999999999975
Q ss_pred CccccCcccHHHHHHHHHH--Hhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccC----CCc
Q 002877 447 GFSVISPENLQRILTVLLE--SIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRT----DVG 519 (872)
Q Consensus 447 ~~~~~~~~~~~~~l~~l~~--~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~----~~~ 519 (872)
.+++++.+++.++. ++.+ +++|+.+|+++|.++|+.+ +..+.||++.|+..+...+... +.+
T Consensus 529 -----~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~------~~~L~~~~~~il~~l~~lL~~~~~~~~~~ 597 (980)
T 3ibv_A 529 -----ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI------KKQVVNYTESSLAMLGDLLNISVSPVTDM 597 (980)
T ss_dssp -----CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT------TTTCSSSHHHHHHHTTGGGCCCCCCCCC-
T ss_pred -----CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh------hHHhhhHHHHHHHHHHHhhcCcCCCCCcc
Confidence 45799999999999 8887 8999999999999999999 7788999999999998877621 100
Q ss_pred c--------------hhHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHH
Q 002877 520 G--------------SKLRSAAYETLNEVVRCSN--ITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLC 583 (872)
Q Consensus 520 ~--------------~~vr~~a~~al~~l~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (872)
+ .+-+...+++++.++...+ .++...+++.+++++++.+.+.+.....+.++ .. .....+
T Consensus 598 ~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~---~~-~i~~~i 673 (980)
T 3ibv_A 598 DAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN---II-SVYCSL 673 (980)
T ss_dssp -CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH---HH-HHHHHH
T ss_pred cccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH---HH-HHHHHH
Confidence 0 1126789999999998865 13567899999999999999887543221111 11 234667
Q ss_pred HHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHcc--CChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcc
Q 002877 584 GVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFAC--RSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQN 661 (872)
Q Consensus 584 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 661 (872)
.+++.+.+++.........+...+.++++.++..++. .+..+|+.+..++.+++...|..+.|+++.++..+....+.
T Consensus 674 ~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~ 753 (980)
T 3ibv_A 674 MAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDM 753 (980)
T ss_dssp HHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCT
T ss_pred HHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCH
Confidence 8899999988653211112445567888888777773 47889999999999999999999999999999999855443
Q ss_pred cchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHH
Q 002877 662 SEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQ 741 (872)
Q Consensus 662 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~ 741 (872)
. -....+++++.++..++.++.+.+..+++.++...-.- +..-. .|.+..
T Consensus 754 ~----e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~-------------l~~~~--~~td~~----------- 803 (980)
T 3ibv_A 754 N----ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSS-------------LSAAP--QGTDDA----------- 803 (980)
T ss_dssp T----THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHH-------------TTC------CCHH-----------
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCCC--CCcHHH-----------
Confidence 2 23557788888888888777777666655544322100 00000 011000
Q ss_pred HHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhh-ccchh-hhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 002877 742 EAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQ-GFKSA-RAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVM 819 (872)
Q Consensus 742 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l 819 (872)
....+++++-+..+..++. .+... ..+.-.++++.++..+.....+ ..+...++.|+.++
T Consensus 804 -----------------r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~-~~d~~~~K~a~~~l 865 (980)
T 3ibv_A 804 -----------------VKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANL-VGEPATQKSSIALV 865 (980)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhcc-CCChHHHHHHHHHH
Confidence 0112344443443444433 22221 2233456777788777765333 35788999999999
Q ss_pred HHHHhhhCcch
Q 002877 820 GDLADALGPNT 830 (872)
Q Consensus 820 ~~l~~~~~~~~ 830 (872)
..++..+|.+.
T Consensus 866 ~~~v~~~~~~~ 876 (980)
T 3ibv_A 866 SKMVSLWGGKD 876 (980)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHCCCC
Confidence 99999998643
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.1e-40 Score=411.58 Aligned_cols=659 Identities=14% Similarity=0.173 Sum_probs=515.5
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccc
Q 002877 3 MEITQFLLAAQSADANIRNEAEANLRQLQQQN--------LPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATT 74 (872)
Q Consensus 3 ~~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~ 74 (872)
.++.++|+.+.|||+++|++|...|.+..+.+ .+.++..+++.+.+ .++.+|..|+..|.+...
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~------ 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVS------ 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH------
Confidence 56999999999999999999999998865432 23667778887764 579999999999987653
Q ss_pred hHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCC--------CchHHHHHHHHhhcc-CCc
Q 002877 75 KEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQK--------QWPELIRSLLNNMTQ-QDS 145 (872)
Q Consensus 75 ~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~--------~~~~ll~~l~~~l~~-~~~ 145 (872)
.++++....+.+.|++.+.++++.+|..++.+++.++....+.. .|++++|.+.+.+.+ +
T Consensus 78 ---------~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~-- 146 (1230)
T 1u6g_C 78 ---------KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-- 146 (1230)
T ss_dssp ---------TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS--
T ss_pred ---------hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC--
Confidence 34567778899999999999999999999999999998765521 499999999999984 6
Q ss_pred cHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 002877 146 LAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKV 225 (872)
Q Consensus 146 ~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~ 225 (872)
++..|.+++.+++.+++.. ++.+ .++.+.+++.+...+.+ ++..||..|+++++.++...+..+- +.+++.
T Consensus 147 ~~~~~~~al~~l~~~~~~~-~~~l-~~~~~~ll~~l~~~L~~--~~~~vR~~a~~al~~l~~~~~~~~~-----~~~l~~ 217 (1230)
T 1u6g_C 147 DVSVQLEALDIMADMLSRQ-GGLL-VNFHPSILTCLLPQLTS--PRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEH 217 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHT-CSSC-TTTHHHHHHHHGGGGGC--SSHHHHHHHHHHHHHHTTTC----C-----TTHHHH
T ss_pred chHHHHHHHHHHHHHHHHh-HhHH-HHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHH
Confidence 7899999999999999887 4556 67889999999999988 6789999999999998765544321 113444
Q ss_pred HHHhhc-CCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCC
Q 002877 226 VCETAK-SKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPET 304 (872)
Q Consensus 226 l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~ 304 (872)
+.+.+. ..+..+|..+++++..++...++.+.+|++.+++.++..+.++++++|..++.++..+++.-.
T Consensus 218 l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~---------- 287 (1230)
T 1u6g_C 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP---------- 287 (1230)
T ss_dssp HHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT----------
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh----------
Confidence 444443 223467888999999999988888889999999999999999999999999998888877421
Q ss_pred CCCCCCchHHHHHhHHhhHHHHHHHHhccc--------------------CCc--------ccCCCCcchhhhHHHHHHH
Q 002877 305 GDSDSPNYHFIEKARSSLVPMLLETLLKQE--------------------EDQ--------DQDDSIWNISMAGGTCLGL 356 (872)
Q Consensus 305 ~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~--------------------~d~--------~~d~~~~~~r~~a~~~l~~ 356 (872)
.-+.++++.++|.++..+...+ +++ ++++..|.+|.+|..++..
T Consensus 288 --------~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~ 359 (1230)
T 1u6g_C 288 --------KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 359 (1230)
T ss_dssp --------CCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHH
T ss_pred --------HHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHH
Confidence 0124577788888877664210 000 0112468999999999999
Q ss_pred HHhhcCC---cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCC------------------ccchhHhHHhHHHHH
Q 002877 357 VARTVGD---EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPT------------------IDKLAPLVHAGFDFL 415 (872)
Q Consensus 357 l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~------------------~~~~~~~l~~l~~~l 415 (872)
++...|+ .+++.+++.+...+.+.+..+|.+++.+++.+....+ ...+..+++.+++.+
T Consensus 360 l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 439 (1230)
T 1u6g_C 360 VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKAL 439 (1230)
T ss_dssp HHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHH
T ss_pred HHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHH
Confidence 9987774 3455678888888888899999999998887765321 123456778888888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-Ch--HHHHHHHHHHHHHHHhhccCC
Q 002877 416 LNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-AP--NVAEKVCGAIYYLAQGYEDAG 492 (872)
Q Consensus 416 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~--~v~~~a~~al~~l~~~~~~~~ 492 (872)
.+.+.|+++.+|.+++.+++.++...+. ...++++.+++.++..+.| ++ .++..++.++..+++..+
T Consensus 440 ~~~l~~~~~~vr~~~~~~L~~l~~~~~~-------~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~--- 509 (1230)
T 1u6g_C 440 HKQMKEKSVKTRQCCFNMLTELVNVLPG-------ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS--- 509 (1230)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTT-------TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC---
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHchh-------hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC---
Confidence 8889999999999999999999988664 4557899999999999998 44 899999999999987663
Q ss_pred CCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCc-------ccHHHHHHHHHHHHHHHHHHHhhh
Q 002877 493 PSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNIT-------ETSQIIAELLPAIMGRLGQTLELQ 565 (872)
Q Consensus 493 ~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~ 565 (872)
+..+.+|++.++|.++..++ + .+..++..++.+++.+++..+ . .+.+|++.++|.++..+...
T Consensus 510 --~~~~~~~l~~llp~L~~~l~--d-~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~~~ll~~ll~~l~~~---- 579 (1230)
T 1u6g_C 510 --PQVFHPHVQALVPPVVACVG--D-PFYKITSEALLVTQQLVKVIR-PLDQPSSFDATPYIKDLFTCTIKRLKAA---- 579 (1230)
T ss_dssp --GGGGHHHHTTTHHHHHHHHT--C-SSHHHHHHHHHHHHHHHHHHC-CSSSCCCCCCHHHHHHHHHHHHHHHSCS----
T ss_pred --HHHHHhHHHHHHHHHHHHHc--c-cchHHHHHHHHHHHHHHHHhc-CcccccccchHHHHHHHHHHHHHHHhcc----
Confidence 55578999999999999886 3 346678889999999998766 4 78899999999999887421
Q ss_pred hcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh-hHH
Q 002877 566 IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG-PEF 644 (872)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~ 644 (872)
+...++|..++.+++.++...|. .+.++++.+++.+...+.+. ..|..+..+++.++.... ..+
T Consensus 580 -------d~~~~vr~~a~~~lg~L~~~~g~------~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~ 644 (1230)
T 1u6g_C 580 -------DIDQEVKERAISCMGQIICNLGD------NLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDL 644 (1230)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHTGG------GCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCC
T ss_pred -------CCCHHHHHHHHHHHHHHHHHhCc------hhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccch
Confidence 22346888999999999999998 78889999999999888754 467788888888775432 256
Q ss_pred HhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCcc-ccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 002877 645 AKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVL-PFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 645 ~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
.++++.++|.+...+.+. +..+|.+++.+++.++...+..+. +++..++..+...+.+. +..++..++.+++.++.
T Consensus 645 ~~~~~~i~~~L~~~l~~~-~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~--D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 645 RPVLGEGVPILASFLRKN-QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES--DMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTT--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcc--hHHHHHHHHHHHHHHHH
Confidence 789999999999998865 567999999999999999875542 23333333333334433 66678899999999998
Q ss_pred hhccchhhhHHHHHHHHHHHHH
Q 002877 724 AIGVHFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 724 ~~~~~~~~~l~~i~~~l~~~~~ 745 (872)
..++.+.++.+.+++.++..++
T Consensus 722 ~~~~~~~~~~~~~l~~~~~~l~ 743 (1230)
T 1u6g_C 722 VYPSSLSKISGSILNELIGLVR 743 (1230)
T ss_dssp SCGGGGGGTTTTTHHHHHHHHT
T ss_pred hCchhHHHhHHhHHHHHHHHHc
Confidence 8887777788888888877654
No 12
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=5.3e-39 Score=375.67 Aligned_cols=752 Identities=13% Similarity=0.184 Sum_probs=510.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhh
Q 002877 4 EITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWL 83 (872)
Q Consensus 4 ~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~ 83 (872)
++.+++..+.+|+++.|++|+++|++++++ |++|..+..+|.+ +.++.+|++|+++|++.++ ..|.
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~-----------~~W~ 82 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLIT-----------RKWK 82 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHH-----------HHGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--ccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHH-----------hhhh
Confidence 578899999999999999999999999998 8999999999976 4588999999999999885 5789
Q ss_pred cCChHHHHHHHHHHHHhhcC----C-----ChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHH
Q 002877 84 AIDISYKSQVKDLLLRTLAS----P-----VPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATL 154 (872)
Q Consensus 84 ~l~~~~~~~i~~~Ll~~l~~----~-----~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al 154 (872)
.++++.+..+|+.+++.+.. + .+.++++++.+++.|+++++|. .||++++.+.+.++++ +.....++
T Consensus 83 ~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~---~~~~~~~L 158 (1023)
T 4hat_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS---VNVCENNM 158 (1023)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC---HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC---HHHHHHHH
Confidence 99999999999999987753 1 4678999999999999999995 8999999999999764 56788899
Q ss_pred HHHHHhhhccC---ccccc-----------hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 002877 155 ETLGYVCEEIS---HQDLV-----------QDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERN 220 (872)
Q Consensus 155 ~~l~~l~~~~~---~~~l~-----------~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~ 220 (872)
.+|..+.+++. .+.++ ....+.+++.+.+.+.++ .+.++...+++|+.+++.|++-+.-.. .
T Consensus 159 ~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~i~~i~~---~ 234 (1023)
T 4hat_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIPYRYIYE---T 234 (1023)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSCTHHHHS---S
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCCHHHhcc---h
Confidence 99999888742 11110 334566777777777653 456788889999998876543221100 0
Q ss_pred HHHHHHH-HhhcCCcHHHHHHHHHHHHHHH--------------------------------------------------
Q 002877 221 YIMKVVC-ETAKSKEVEIRQAAFECLVSIA-------------------------------------------------- 249 (872)
Q Consensus 221 ~ll~~l~-~~~~~~~~~~~~~~~~~l~~l~-------------------------------------------------- 249 (872)
.+++.++ ..+. +++.|..|++|+..++
T Consensus 235 ~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e 312 (1023)
T 4hat_C 235 NILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQS 312 (1023)
T ss_dssp SHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHH
T ss_pred hHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHH
Confidence 1333333 3332 3444555555555544
Q ss_pred -------------HhhhhhhH--HhHHHH----HHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCC
Q 002877 250 -------------STYYEVLE--PYMQTL----FELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSP 310 (872)
Q Consensus 250 -------------~~~~~~~~--~~l~~l----~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 310 (872)
+.+...+. ++...+ +..++.....++.++...+++||..+++.-.. + ..
T Consensus 313 ~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~-------e-----~~ 380 (1023)
T 4hat_C 313 FLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY-------E-----PL 380 (1023)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTT-------S-----TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHh-------c-----hH
Confidence 33333222 111111 22333333445777778899999999874221 0 00
Q ss_pred chHHHHHhHHhhHHHHHHHHhcccCCc--ccCCCCc-----------chhhhHHHHHHHHHhhcCCcchhchHHHHHhhc
Q 002877 311 NYHFIEKARSSLVPMLLETLLKQEEDQ--DQDDSIW-----------NISMAGGTCLGLVARTVGDEVVPLVMPFVEANI 377 (872)
Q Consensus 311 ~~~~~~~~l~~l~~~l~~~l~~~~~d~--~~d~~~~-----------~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l 377 (872)
.....++++..+++.++..+..++++. ++|++.| ...+...++|..++...+..+++.+++.+.+.+
T Consensus 381 ~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l 460 (1023)
T 4hat_C 381 KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQI 460 (1023)
T ss_dssp TGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 123457888899999999998876421 0111112 222233478888888778888888899988777
Q ss_pred cC--CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHhhccCCCCCccc
Q 002877 378 VK--SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR-----DENNHVKDTTAWTLSRIFELLHCPATGFSV 450 (872)
Q Consensus 378 ~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
.+ .+|+.|+|+++++|++++++.++...++++++++.+++.+. |+.+.||.+++|++|++++|+..
T Consensus 461 ~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------- 533 (1023)
T 4hat_C 461 DGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA------- 533 (1023)
T ss_dssp SSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-------
T ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-------
Confidence 64 57999999999999999988655577899999999999886 57788999999999999999974
Q ss_pred cCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC--CCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHH
Q 002877 451 ISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA--GPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAA 527 (872)
Q Consensus 451 ~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 527 (872)
...+++.++..++..+.+ +++|+.+||++|.++|+.|+.. +..++...||++.++..+...+...+ ...+..+
T Consensus 534 -~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~---~~~~~~l 609 (1023)
T 4hat_C 534 -HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ---PQQVHTF 609 (1023)
T ss_dssp -CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC---HHHHHHH
T ss_pred -cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC---HHHHHHH
Confidence 577999999999999987 8999999999999999998521 12245567899999999999887544 3337899
Q ss_pred HHHHHHHHhcCCCcc-cHHHHHHHHHHHHHHHHHHHhhhhcCc---chhhhHHHHHHHHHHHHHHHHHHcCCCccchhhc
Q 002877 528 YETLNEVVRCSNITE-TSQIIAELLPAIMGRLGQTLELQIVSS---DDREKQGDLQASLCGVLQVIIQKFSSTDATKSFI 603 (872)
Q Consensus 528 ~~al~~l~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 603 (872)
+++++.+++..+... ...+++.+++++.+.|.+......... .|. ........+++++..++.++|. .+
T Consensus 610 yeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~-~~~~~l~~il~~~~~v~~~lg~------~f 682 (1023)
T 4hat_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDS-ETVKIIANIIKTNVAVCTSMGA------DF 682 (1023)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCH-HHHHHHHHHHHHHHHHHHHHGG------GG
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCH-HHHHHHHHHHHHHHHHHHHhcH------HH
Confidence 999999999998222 567999999999999998875321111 111 1122346678899999999999 89
Q ss_pred hhhHHHHHHHHHHHHccCCh-----------------------hHHHHHHHHHHHHHHHhhh-H--HHhhhHHHHHHHHh
Q 002877 604 LQTADQIMVLFLRVFACRSS-----------------------TVHEEAMLAIGALAYATGP-E--FAKYMPEFYQYLQM 657 (872)
Q Consensus 604 ~~~~~~l~~~l~~~l~~~~~-----------------------~v~~~a~~~l~~l~~~~~~-~--~~~~l~~i~~~l~~ 657 (872)
.|++..+++.++...+.... .+|...+..+...+..... . ...+++.++..+..
T Consensus 683 ~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~ 762 (1023)
T 4hat_C 683 YPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLE 762 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHH
Confidence 99998888888876543211 2333344444444333211 1 12233444444433
Q ss_pred hhcccchHhHH-HHHHHHHHHHHHHhcCCccccHHHHHHHHH----HHhcCC-CCCCCCchhHHHHHHHHHHhhccchhh
Q 002877 658 GLQNSEEYQVC-AITVGVVGDVCRALDDKVLPFCDGIMSLLL----NALSNS-QLNRSVKPPILSCFGDIALAIGVHFEK 731 (872)
Q Consensus 658 ~l~~~~~~~v~-~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~----~~l~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~ 731 (872)
...+.. +..| ...+.+++.++..++..+.+.++.++..++ .+++.+ +..++.|...+..+.++...+...|..
T Consensus 763 dY~~~~-~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~ 841 (1023)
T 4hat_C 763 DYMNNV-PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE 841 (1023)
T ss_dssp HHHHSC-GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHT
T ss_pred HHHhCC-hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHc
Confidence 222211 1111 345677788888888878888777776654 555542 226788999999999998887666654
Q ss_pred h----HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchh-----hhhhhhhhHHHHHHHHHHHh
Q 002877 732 Y----VPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSA-----RAEVMMPYAQHLLQFIELIF 802 (872)
Q Consensus 732 ~----l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~il~~l~~~~ 802 (872)
. +..++..++-++++. . .++-++.+..+..++..+... ...-+..|...++..+...+
T Consensus 842 ~~~~~~~~~~~~~~~a~~h~------~-------r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~ 908 (1023)
T 4hat_C 842 LPPAAFKLFVDAICWAFKHN------N-------RDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVL 908 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHTCC------C-------HHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC------c-------hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334444444444431 1 133344455555555443321 11223466666666666666
Q ss_pred cCCCCCHhHHHHHHHHHHHHHh
Q 002877 803 KDNHRDENVTKAAVAVMGDLAD 824 (872)
Q Consensus 803 ~~~~~~~~~~~~a~~~l~~l~~ 824 (872)
.|+.+.-.. +.-..++..+..
T Consensus 909 td~~h~~~f-~~~~~~l~~l~~ 929 (1023)
T 4hat_C 909 TDSDHKSGF-SKQALLLMKLIS 929 (1023)
T ss_dssp HSSSCGGGH-HHHHHHHHHHHH
T ss_pred hCchhhhhH-HHHHHHHHHHHH
Confidence 666533333 333344444433
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.8e-36 Score=361.16 Aligned_cols=719 Identities=13% Similarity=0.138 Sum_probs=543.4
Q ss_pred CCHHHHHHHHHHHHHHHhc--------------------ChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccc
Q 002877 15 ADANIRNEAEANLRQLQQQ--------------------NLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATT 74 (872)
Q Consensus 15 ~~~~~r~~A~~~L~~~~~~--------------------~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~ 74 (872)
.+.++|..|-..|+...+. ..+..-..+++.+.+ .++.+|..++..+.......+.
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~--~~~~vr~~~~~~l~~i~~~~~p-- 128 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS--IEPRIANAAAQLIAAIADIELP-- 128 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHGG--
T ss_pred CChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHHHHHhhCc--
Confidence 4788999999888864211 112233456666665 4688999999998876543211
Q ss_pred hHHHHhhhhcCChHHHHHHHHHHHHhhcCC-ChhHhhHHHHHHHHHHHhhcCC-----CCchHHHHHHHHhhccCCccHH
Q 002877 75 KEDLAKQWLAIDISYKSQVKDLLLRTLASP-VPEARHTSAQVIAKIASIEIPQ-----KQWPELIRSLLNNMTQQDSLAA 148 (872)
Q Consensus 75 ~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~-~~~vr~~~~~~l~~i~~~~~p~-----~~~~~ll~~l~~~l~~~~~~~~ 148 (872)
...| ..+.+.|++.+.++ ++.+|..+..+++.++....+. ...+.+++.+.+.+.+++.++.
T Consensus 129 ----~~~w--------~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 196 (861)
T 2bpt_A 129 ----HGAW--------PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKA 196 (861)
T ss_dssp ----GTCC--------HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred ----cccc--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 0134 23556777888887 8999999999999999764332 1345677777887776522578
Q ss_pred HHHHHHHHHHHhhhccCccccc-hhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 002877 149 LKQATLETLGYVCEEISHQDLV-QDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVC 227 (872)
Q Consensus 149 ~r~~al~~l~~l~~~~~~~~l~-~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 227 (872)
+|..++.+++.++..+. +.+. ....+.+++.+...+.+ +++++|..++++|..++......+.... .+.+++.+.
T Consensus 197 vr~~al~~l~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~ 272 (861)
T 2bpt_A 197 VRLAALNALADSLIFIK-NNMEREGERNYLMQVVCEATQA--EDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTI 272 (861)
T ss_dssp HHHHHHHHHHHHGGGCH-HHHTSHHHHHHHHHHHHHHHTC--SCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHccChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999998876542 1110 11235577777777776 6889999999999998876554333211 113666677
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHhhh-----------------hhhHHhHHHHHHHHHHHhcC-------CChHHHHHHH
Q 002877 228 ETAKSKEVEIRQAAFECLVSIASTYY-----------------EVLEPYMQTLFELTSNAVKG-------DEEAVALQAV 283 (872)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~-----------------~~~~~~l~~l~~~~~~~~~~-------~~~~~~~~al 283 (872)
..+.+.++++|..++++|..++.... ..+.+++..+++.++..+.+ ++..+|..+.
T Consensus 273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~ 352 (861)
T 2bpt_A 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAG 352 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHH
Confidence 77888899999999999999987632 23456677888888777764 2346888888
Q ss_pred HhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC-
Q 002877 284 EFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG- 362 (872)
Q Consensus 284 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~- 362 (872)
..+..++..-. ...++.+++.+...+.. ..|..|.+|..+++.++...+
T Consensus 353 ~~L~~l~~~~~---------------------~~~~~~l~~~l~~~l~~---------~~~~~r~~a~~~l~~i~~~~~~ 402 (861)
T 2bpt_A 353 ACLQLFAQNCG---------------------NHILEPVLEFVEQNITA---------DNWRNREAAVMAFGSIMDGPDK 402 (861)
T ss_dssp HHHHHHHHHHG---------------------GGGHHHHHHHHHHHTTC---------SSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHHHHHHHHcc---------------------HhHHHHHHHHHHHHcCC---------CChhHHHHHHHHHHHHHcCCCH
Confidence 88888876521 22345566666665542 129999999999999987654
Q ss_pred C---cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccc-hhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 002877 363 D---EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDK-LAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIF 438 (872)
Q Consensus 363 ~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~-~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 438 (872)
+ ..++.+++.+...+.++++.+|.+++.+++.++....++. -.++++.++|.++..+.|+ +.||.+++++++.++
T Consensus 403 ~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 403 VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 2 2345678888888899999999999999999987653211 2457889999999999887 999999999999999
Q ss_pred hhccCCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhcc
Q 002877 439 ELLHCPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADR 515 (872)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~ 515 (872)
+.+.+. ......+|++.+++.++..+.+ ++.+|..++.+++.++... +....+|+..+++.++..+..
T Consensus 482 ~~~~~~---~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~------~~~~~~~~~~l~~~l~~~l~~ 552 (861)
T 2bpt_A 482 EQLAEA---TPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA------TDTVAETSASISTFVMDKLGQ 552 (861)
T ss_dssp HHHSSS---SSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC------CGGGHHHHHHHHHHHHHHHHH
T ss_pred Hhcccc---cchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc------chhhHHHHHHHHHHHHHHHHH
Confidence 876510 0124568999999999999974 4899999999999999987 667788999999988887763
Q ss_pred C--------C----CcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHH
Q 002877 516 T--------D----VGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLC 583 (872)
Q Consensus 516 ~--------~----~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (872)
. . .....+|..++++++.++...+ ..+.+|.+.+++.++..+.... .+ .++..++
T Consensus 553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~---------~~---~v~~~~~ 619 (861)
T 2bpt_A 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP-SSVEPVADMLMGLFFRLLEKKD---------SA---FIEDDVF 619 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHHHHSTT---------GG---GTHHHHH
T ss_pred HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHccCC---------CC---cHHHHHH
Confidence 2 0 1134568899999999999999 8888899999999988876421 00 3567788
Q ss_pred HHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccc
Q 002877 584 GVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSE 663 (872)
Q Consensus 584 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~ 663 (872)
.+++.++...+. .+.+|++.+++.+...+++.+..+|..++.+++.++...+..+.+|++.++|.+...+.+.+
T Consensus 620 ~~l~~l~~~~~~------~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 620 YAISALAASLGK------GFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp HHHHHHHHHHGG------GGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhh------hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 899999999998 89999999999999999888889999999999999999999999999999999999988652
Q ss_pred -hHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCC---------CCCCCchhHHHHHHHHHHhhc---cchh
Q 002877 664 -EYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQ---------LNRSVKPPILSCFGDIALAIG---VHFE 730 (872)
Q Consensus 664 -~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~---------~~~~~~~~~~~~l~~l~~~~~---~~~~ 730 (872)
+++++..++.+++.++...|+.|.+|++.+++.+.+.+.... ....+|..++.+++.++..+| +.+.
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~ 773 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 467999999999999999999999999999999999887431 013578899999999999887 6688
Q ss_pred hhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhcc-chhhhhhhhhhHH-HHHHHHHHHhcC-CCC
Q 002877 731 KYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGF-KSARAEVMMPYAQ-HLLQFIELIFKD-NHR 807 (872)
Q Consensus 731 ~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~-~il~~l~~~~~~-~~~ 807 (872)
+|++.+++.+...+.. .+. .|...+|..++.++..++..+ +. .+.+|++ .+++.+.+.+.. +..
T Consensus 774 ~~~~~i~~~l~~~~~d--------~~~-~~~~~vr~~a~~~l~~l~~~~~g~----~~~~~~~~~~~~~ll~~l~~~~~~ 840 (861)
T 2bpt_A 774 PYVGTIFQFIAQVAED--------PQL-YSEDATSRAAVGLIGDIAAMFPDG----SIKQFYGQDWVIDYIKRTRSGQLF 840 (861)
T ss_dssp GGHHHHHHHHHHHHHC--------HHH-HTSHHHHHHHHHHHHHHHHHCTTS----TTGGGTTCHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHcC--------ccc-CCcHHHHHHHHHHHHHHHHHcCCc----hHHHHHhcHHHHHHHHHHhhccCC
Confidence 9999999999887542 000 124579999999999998888 43 4777777 777766665542 335
Q ss_pred CHhHHHHHHHHHHHHHhh
Q 002877 808 DENVTKAAVAVMGDLADA 825 (872)
Q Consensus 808 ~~~~~~~a~~~l~~l~~~ 825 (872)
+..++.++.-+++.+...
T Consensus 841 ~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 841 SQATKDTARWAREQQKRQ 858 (861)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 677888777777776653
No 14
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=9.7e-36 Score=345.02 Aligned_cols=746 Identities=13% Similarity=0.180 Sum_probs=494.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhh
Q 002877 4 EITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWL 83 (872)
Q Consensus 4 ~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~ 83 (872)
++.+++..+.+|+++.|++|+++|++++++ |++|..+..+|.+ +.++.+|++|+++|++.+. ..|.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s--p~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~-----------~~W~ 94 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH--PDAWTRVDTILEF-SQNMNTKYYGLQILENVIK-----------TRWK 94 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC--SCHHHHHTCC----CCSHHHHHHHHHHHHHHHH-----------HTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--chHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHH-----------hhhh
Confidence 578899999999999999999999999998 8999999998876 4689999999999999885 5788
Q ss_pred cCChHHHHHHHHHHHHhhcC---------CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHH
Q 002877 84 AIDISYKSQVKDLLLRTLAS---------PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATL 154 (872)
Q Consensus 84 ~l~~~~~~~i~~~Ll~~l~~---------~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al 154 (872)
.++++.+..+|+.+++.+.. .++.++++++.+++.++++++|. .||++++.+++.+++ ++..++.++
T Consensus 95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~Wp~fi~dLv~~~~~---~~~~~~~~L 170 (1073)
T 3gjx_A 95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-HWPTFISDIVGASRT---SESLCQNNM 170 (1073)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHH---CHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-hccHHHHHHHHHhCC---CHHHHHHHH
Confidence 99999999999999987743 24788999999999999999995 899999999998875 466788999
Q ss_pred HHHHHhhhccCc---------------cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 002877 155 ETLGYVCEEISH---------------QDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMER 219 (872)
Q Consensus 155 ~~l~~l~~~~~~---------------~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ 219 (872)
.+|..+.+++.. +.+ ....+.+++.+...+... .+.++...++++++.++.|++-+.-.+
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L-~~~~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~i~~i~~--- 245 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSM-CNEFSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIPLGYIFE--- 245 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHH-HHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCTHHHHS---
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcCHHHhcc---
Confidence 999999988531 112 334556777766666543 467888888888888776653221100
Q ss_pred HHHHHHH-HHhhcCCcHHHHHHHHHHHHHHHH------------------------------------------------
Q 002877 220 NYIMKVV-CETAKSKEVEIRQAAFECLVSIAS------------------------------------------------ 250 (872)
Q Consensus 220 ~~ll~~l-~~~~~~~~~~~~~~~~~~l~~l~~------------------------------------------------ 250 (872)
..+++.+ +..+. +++.|..|++|+..++.
T Consensus 246 ~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~ 323 (1073)
T 3gjx_A 246 TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQN 323 (1073)
T ss_dssp SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHH
T ss_pred chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHH
Confidence 1134433 33332 44555556655555554
Q ss_pred ----------hhhhhhH------HhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhh---cCCC-CC--CCC
Q 002877 251 ----------TYYEVLE------PYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEF---ENPE-TG--DSD 308 (872)
Q Consensus 251 ----------~~~~~~~------~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~---~~~~-~~--~~~ 308 (872)
.+...+. ..+...+..++.....++.++...+++||..+.+.-...... ..+. .| ...
T Consensus 324 l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~ 403 (1073)
T 3gjx_A 324 LSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFD 403 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 2222211 111112223333444567888889999999998752211100 0000 00 000
Q ss_pred C-CchHHHHHhHHhhHHHHHHHHhcccCC----cccCC---------CCcchhhhHHHHHHHHHhhcCCcchhchHHHHH
Q 002877 309 S-PNYHFIEKARSSLVPMLLETLLKQEED----QDQDD---------SIWNISMAGGTCLGLVARTVGDEVVPLVMPFVE 374 (872)
Q Consensus 309 ~-~~~~~~~~~l~~l~~~l~~~l~~~~~d----~~~d~---------~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 374 (872)
. ...+...+++..+..++...|..++|. +|+.| +..+.++...+++..++...++.....+++.+.
T Consensus 404 ~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~ 483 (1073)
T 3gjx_A 404 IPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQ 483 (1073)
T ss_dssp SCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0 112334677778888888888776542 11111 011234456667766665556777778888887
Q ss_pred hhccC--CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 375 ANIVK--SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE-----NNHVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 375 ~~l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
+.++. .+|..++++++++|+++....++.-+++++++++.+++....+ .+.++...+|++|++.+|+..
T Consensus 484 ~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~---- 559 (1073)
T 3gjx_A 484 NQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA---- 559 (1073)
T ss_dssp HHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH----
T ss_pred HHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh----
Confidence 76654 4699999999999999965543345578999999999887544 466888889999999999974
Q ss_pred ccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC--CCCCCCchhhHHHHHHHHHHhhccCCCcchhHH
Q 002877 448 FSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA--GPSSSLLSPYLTSIIAELLRAADRTDVGGSKLR 524 (872)
Q Consensus 448 ~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~--~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr 524 (872)
...+++.++..++..+.+ ++.|+.+||.+|..+|+.|+.. +..++...||+..|+..+.......+ ..-.
T Consensus 560 ----h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~---~~~~ 632 (1073)
T 3gjx_A 560 ----HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ---PQQV 632 (1073)
T ss_dssp ----CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC---HHHH
T ss_pred ----CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC---HHHH
Confidence 678999999999999998 9999999999999999998632 11234467899999999988887654 2237
Q ss_pred HHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHhhhhcCc---chhhhHHHHHHHHHHHHHHHHHHcCCCccc
Q 002877 525 SAAYETLNEVVRCSNITE--TSQIIAELLPAIMGRLGQTLELQIVSS---DDREKQGDLQASLCGVLQVIIQKFSSTDAT 599 (872)
Q Consensus 525 ~~a~~al~~l~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 599 (872)
...+++++.++...| .. ...+++.++++..+.|.+.+.....+. .|.+. ..-...++.+...++.++|.
T Consensus 633 ~~lyeav~~vi~~~p-~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~-i~~l~~il~~n~~v~~~~g~---- 706 (1073)
T 3gjx_A 633 HTFYEAVGYMIGAQT-DQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPET-VKQLGSILKTNVRACKAVGH---- 706 (1073)
T ss_dssp HHHHHHHHHHHTTCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHH-HHHHHHHHHHHHHHHHHHCG----
T ss_pred HHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHH-HHHHHHHHhhhHHHHhhcch----
Confidence 799999999999999 54 477999999999999999875321111 12211 22345677788889999999
Q ss_pred hhhchhhHHHHHHHHHHHHccC-----------------Ch------hHHHHHHHHHHHHHHHhhh---HHHhhhHHHHH
Q 002877 600 KSFILQTADQIMVLFLRVFACR-----------------SS------TVHEEAMLAIGALAYATGP---EFAKYMPEFYQ 653 (872)
Q Consensus 600 ~~~~~~~~~~l~~~l~~~l~~~-----------------~~------~v~~~a~~~l~~l~~~~~~---~~~~~l~~i~~ 653 (872)
.+.+++..+++.++...+.. .+ .+|...+.++...+....+ -...+++.++.
T Consensus 707 --~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~ 784 (1073)
T 3gjx_A 707 --PFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLD 784 (1073)
T ss_dssp --GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHH
Confidence 89998888888777654321 01 1344444444444332211 12234444444
Q ss_pred HHHhhhcccchHhHH-HHHHHHHHHHHHHhcCCccccHHHHHHHHH----HHhcCC-CCCCCCchhHHHHHHHHHHhhcc
Q 002877 654 YLQMGLQNSEEYQVC-AITVGVVGDVCRALDDKVLPFCDGIMSLLL----NALSNS-QLNRSVKPPILSCFGDIALAIGV 727 (872)
Q Consensus 654 ~l~~~l~~~~~~~v~-~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~----~~l~~~-~~~~~~~~~~~~~l~~l~~~~~~ 727 (872)
.++...... .+..| ...+.+++.++..++..+.+.++.|+..++ +++..+ +..++.|...+..+..+...+..
T Consensus 785 ~vl~dY~~~-~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~ 863 (1073)
T 3gjx_A 785 AVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFP 863 (1073)
T ss_dssp HTHHHHHHS-CGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhcC-CcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhH
Confidence 443322221 11111 235677788888888888888888877654 445432 22678899999999999888766
Q ss_pred chhhh----HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccch---hhhhhhhhhHHHHHHHHHH
Q 002877 728 HFEKY----VPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKS---ARAEVMMPYAQHLLQFIEL 800 (872)
Q Consensus 728 ~~~~~----l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~il~~l~~ 800 (872)
.+... +..++..++-++++. . .++-++.+..+..++..+.. ....-+..|...++..+..
T Consensus 864 ~l~~l~~~~~~~~i~~i~wa~kh~------~-------r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~ 930 (1073)
T 3gjx_A 864 AFLAIPPAQFKLVLDSIIWAFKHT------M-------RNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFS 930 (1073)
T ss_dssp GTTTSCHHHHHHHHHHHHHHHTCS------S-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCC------C-------hhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 55443 333444444444431 1 12334444444444443332 1122244666666666666
Q ss_pred HhcCCCC
Q 002877 801 IFKDNHR 807 (872)
Q Consensus 801 ~~~~~~~ 807 (872)
.+.|+.+
T Consensus 931 v~td~~h 937 (1073)
T 3gjx_A 931 VVTDTSH 937 (1073)
T ss_dssp HHTCTTC
T ss_pred HHhCchH
Confidence 6666653
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=7.7e-36 Score=358.01 Aligned_cols=711 Identities=11% Similarity=0.129 Sum_probs=525.1
Q ss_pred CChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcC--CChhHhhHHHHHHHHHHHhhcC---
Q 002877 51 KPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLAS--PVPEARHTSAQVIAKIASIEIP--- 125 (872)
Q Consensus 51 ~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~--~~~~vr~~~~~~l~~i~~~~~p--- 125 (872)
.+.++|+.|...|++.- .+....+...|++.+.+ .+..+|..++.++........+
T Consensus 13 ~d~~~r~~A~~~L~~~~-------------------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (876)
T 1qgr_A 13 PDRLELEAAQKFLERAA-------------------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp SCHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred CCHHHHHHHHHHHHHHH-------------------hcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhH
Confidence 47899999999997632 11234566778887776 3588999999999987642210
Q ss_pred ---CCCchHH--------HHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCC--CH
Q 002877 126 ---QKQWPEL--------IRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEH--SA 192 (872)
Q Consensus 126 ---~~~~~~l--------l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~--~~ 192 (872)
...|+.+ .+.+++.+.++ ++.. ..+..+++.++....+ ..+++.+++.+.+.+.+ + +.
T Consensus 74 ~~~~~~w~~l~~~~~~~ik~~ll~~l~~~--~~~~-~~~~~~l~~i~~~~~~----~~~w~~ll~~l~~~l~~--~~~~~ 144 (876)
T 1qgr_A 74 AQYQQRWLAIDANARREVKNYVLHTLGTE--TYRP-SSASQCVAGIACAEIP----VNQWPELIPQLVANVTN--PNSTE 144 (876)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTTC--CSSS-CHHHHHHHHHHHHHGG----GTCCTTHHHHHHHHHHC--TTCCH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHhCCC--cHHH-HHHHHHHHHHHHhhCc----ccccHHHHHHHHHHHhC--CCCCH
Confidence 1245443 33477888776 5556 7888899888875321 35678899999999987 5 78
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhhhhhhHHh--HHHHHHHHH
Q 002877 193 EVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSK--EVEIRQAAFECLVSIASTYYEVLEPY--MQTLFELTS 268 (872)
Q Consensus 193 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~l~~~~~ 268 (872)
.+|..+++++..++..+..... ....+.+++.+.+.+.++ +.++|..+++++..++...+..+... ...+++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 145 HMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999998865422110 112234677777777766 68999999999999876433322111 123566666
Q ss_pred HHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHH-hhHHHHHHHHhcccCCcccCCCCcchh
Q 002877 269 NAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARS-SLVPMLLETLLKQEEDQDQDDSIWNIS 347 (872)
Q Consensus 269 ~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~d~~~~~~r 347 (872)
....+.+++++..+++++..+++... ..+.+++. .+++.++..+... + ..+|
T Consensus 224 ~~~~~~~~~vr~~a~~~l~~l~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~-------~--~~v~ 276 (876)
T 1qgr_A 224 EATQCPDTRVRVAALQNLVKIMSLYY------------------QYMETYMGPALFAITIEAMKSD-------I--DEVA 276 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSG------------------GGCHHHHTTTHHHHHHHHHTCS-------S--HHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHHhcCC-------c--hHHH
Confidence 66677889999999999999987633 23455666 7888877765321 1 4678
Q ss_pred hhHHHHHHHHHhhcC--------------------Cc----chhchHHHHHhhcc-------CCCcchHHHHHHHHHHhh
Q 002877 348 MAGGTCLGLVARTVG--------------------DE----VVPLVMPFVEANIV-------KSDWRCREAATYAFGSVL 396 (872)
Q Consensus 348 ~~a~~~l~~l~~~~~--------------------~~----~~~~l~~~l~~~l~-------~~~~~~r~aal~~l~~i~ 396 (872)
..+.+++..++.... .. ..+.+++.+.+.+. +.+|..|.++..+++.++
T Consensus 277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~ 356 (876)
T 1qgr_A 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHH
Confidence 888888887776420 01 12344555544443 457999999999999998
Q ss_pred cCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHH
Q 002877 397 EGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAE 475 (872)
Q Consensus 397 ~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~ 475 (872)
...+ + ..++.+++.+.+.+.|+++.+|.+++++++.+++.... ....++++.+++.++..+.| ++.||.
T Consensus 357 ~~~~-~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~------~~~~~~~~~~l~~l~~~l~d~~~~vr~ 426 (876)
T 1qgr_A 357 TCCE-D---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP------SQLKPLVIQAMPTLIELMKDPSVVVRD 426 (876)
T ss_dssp HHHG-G---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH------HHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHCc-H---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8764 3 34678889999999999999999999999999876541 12345788899999999998 999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCC-chhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC-------------Cc
Q 002877 476 KVCGAIYYLAQGYEDAGPSSSL-LSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN-------------IT 541 (872)
Q Consensus 476 ~a~~al~~l~~~~~~~~~~~~~-l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~-------------~~ 541 (872)
.|+++++++++.+. +.. ..++++.+++.++..+. + +..+|..+..++..++...+ ..
T Consensus 427 ~a~~~l~~~~~~~~-----~~~~~~~~l~~~l~~l~~~l~--~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~ 497 (876)
T 1qgr_A 427 TAAWTVGRICELLP-----EAAINDVYLAPLLQCLIEGLS--A--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATY 497 (876)
T ss_dssp HHHHHHHHHHHHCG-----GGTSSTTTHHHHHHHHHHHTT--S--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCC
T ss_pred HHHHHHHHHHHhCc-----hhcccHHHHHHHHHHHHHHHc--C--CHHHHHHHHHHHHHHHHHhhhccccccccccccch
Confidence 99999999999873 211 46899999999999987 3 26679999999999987642 02
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHcc-
Q 002877 542 ETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFAC- 620 (872)
Q Consensus 542 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~- 620 (872)
.+.+|++.++|.++..+... .. ....++..+..+++.++...+. ...+++..+++.++..+..
T Consensus 498 ~l~~~~~~il~~L~~~l~~~------~~----~~~~~r~~~~~~l~~l~~~~~~------~~~~~~~~l~~~l~~~l~~~ 561 (876)
T 1qgr_A 498 CLSSSFELIVQKLLETTDRP------DG----HQNNLRSSAYESLMEIVKNSAK------DCYPAVQKTTLVIMERLQQV 561 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC------SS----CSTTHHHHHHHHHHHHHHTCCS------TTHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHhCc------Cc----chhhHHHHHHHHHHHHHHHCch------hhHHHHHHHHHHHHHHHHHH
Confidence 36788899999888776532 00 1123667788999999999988 7788888888888887763
Q ss_pred --------C--C----hhHHHHHHHHHHHHHHHhh-hHHHhhhHHHHHHHHhhhcccch-HhHHHHHHHHHHHHHHHhcC
Q 002877 621 --------R--S----STVHEEAMLAIGALAYATG-PEFAKYMPEFYQYLQMGLQNSEE-YQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 621 --------~--~----~~v~~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~~ 684 (872)
. + ..++..++.+++.++...+ ..+.+|++.++|.+...+.+..+ ..++..++.+++.++...+.
T Consensus 562 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~ 641 (876)
T 1qgr_A 562 LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG 641 (876)
T ss_dssp HTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh
Confidence 1 1 4567888999999999999 89999999999999999986532 25899999999999999999
Q ss_pred CccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHH
Q 002877 685 KVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQL 764 (872)
Q Consensus 685 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~ 764 (872)
.+.||++.+++.+...+.+.+ ++.+|..++.+++.++...|+.+.+|++.+++.+...+.... ...++
T Consensus 642 ~~~~~~~~~~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-----------~~~~~ 709 (876)
T 1qgr_A 642 EFLKYMEAFKPFLGIGLKNYA-EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN-----------VHRSV 709 (876)
T ss_dssp GGGGGHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT-----------SCGGG
T ss_pred hHHHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc-----------ccHHh
Confidence 999999999999999998652 577999999999999999999999999999999999876410 01246
Q ss_pred HHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCC--CC-------HhHHHHHHHHHHHHHhhhCcc------
Q 002877 765 RSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNH--RD-------ENVTKAAVAVMGDLADALGPN------ 829 (872)
Q Consensus 765 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~--~~-------~~~~~~a~~~l~~l~~~~~~~------ 829 (872)
|..++.++..++..++. .+.+|++.+++.+...+..+. .+ ..+|..++.++..++..+|..
T Consensus 710 ~~~~~~~l~~i~~~~g~----~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~ 785 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGG----EFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP 785 (876)
T ss_dssp HHHHHHHHHHHHHHHGG----GGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred hHHHHHHHHHHHHHhch----hHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 77888888888776654 488999999999988765432 11 278999999999999988753
Q ss_pred ---hhhhccCchHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHh
Q 002877 830 ---TKLLFKDSSFCNDFMSECLRSD--DEQLKETAGWTQGMINRVL 870 (872)
Q Consensus 830 ---~~~~~~~~~~v~~ll~~~~~~~--~~~~~~~a~~~~~~~~~~~ 870 (872)
.+. .+...++ .++.....++ ++.+|.+|..++|.+++.+
T Consensus 786 ~~~~~~-~~~~~i~-~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 829 (876)
T 1qgr_A 786 DVMLVQ-PRVEFIL-SFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp GGGGSG-GGHHHHH-HHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 121 1222233 3444434565 7899999999999998764
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.4e-32 Score=335.92 Aligned_cols=675 Identities=13% Similarity=0.152 Sum_probs=498.9
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHH
Q 002877 38 FLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIA 117 (872)
Q Consensus 38 ~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~ 117 (872)
.+..+++-+.+ .+..+|..|..-|.+.+.... ..+++.....+...+++.+.++++.+|..++.+++
T Consensus 7 ~l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~~-----------~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 7 HISNLLEKMTS--SDKDFRFMATNDLMTELQKDS-----------IKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp HHHHHHHHTTC--SSHHHHHHHHHHHHHHTSSSC-----------CSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CCHhHHHHHHHHHHHHHcccc-----------cCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34455555554 579999999988888775321 23456667788889999999999999999999999
Q ss_pred HHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCcc-----ccchhhHHHHHHHHHhcccCCCCCH
Q 002877 118 KIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQ-----DLVQDEVNAVLTAVVQGMNLAEHSA 192 (872)
Q Consensus 118 ~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~-----~l~~~~~~~l~~~l~~~l~~~~~~~ 192 (872)
.++....+ ..++.+++.+++.+.++ ++.+|.++..+++.++..+.++ .. ..+++.++|.++..+.++ ++.
T Consensus 74 ~l~~~~~~-~~~~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~~~~~~~-~~~~~~llp~L~~~l~~~-~~~ 148 (1230)
T 1u6g_C 74 PLVSKVKE-YQVETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALA-ANVCKKITGRLTSAIAKQ-EDV 148 (1230)
T ss_dssp HHHTTSCH-HHHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTH-HHHHHHHHHHHHHHHSCC-SCH
T ss_pred HHHHhCCH-HHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCCcccccchH-HHHHHHHHHHHHHHHcCC-Cch
Confidence 99976533 47888999999999888 7888999999999999887532 13 457899999999999842 578
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhh-HHhHHHHHHHHHHHh
Q 002877 193 EVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVL-EPYMQTLFELTSNAV 271 (872)
Q Consensus 193 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~l~~l~~~~~~~~ 271 (872)
.+|..++.++..++...+..+.. ..+.+++.+...+.++++.+|..++.++..++...++.+ ...++.+++.+..
T Consensus 149 ~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~-- 224 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK-- 224 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--
Confidence 99999999999987654443332 224478888888888899999999999999987665432 2223344443322
Q ss_pred cCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHH
Q 002877 272 KGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGG 351 (872)
Q Consensus 272 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~ 351 (872)
+.++.++..+++.|..+++... ..+.++++.++|.++..+.+. + ..+|..+.
T Consensus 225 -~~~~~~r~~a~~~l~~l~~~~~------------------~~~~~~l~~l~~~ll~~l~d~-------~--~~vR~~a~ 276 (1230)
T 1u6g_C 225 -NDSMSTTRTYIQCIAAISRQAG------------------HRIGEYLEKIIPLVVKFCNVD-------D--DELREYCI 276 (1230)
T ss_dssp -TCSSCSCTTHHHHHHHHHHHSS------------------GGGTTSCTTHHHHHHHHHSSC-------C--TTTHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHhcCC-------C--HHHHHHHH
Confidence 1234677888999998887522 123567788999998887521 1 46899999
Q ss_pred HHHHHHHhhcCCcc---hhchHHHHHhhcc-------------------------------------CCCcchHHHHHHH
Q 002877 352 TCLGLVARTVGDEV---VPLVMPFVEANIV-------------------------------------KSDWRCREAATYA 391 (872)
Q Consensus 352 ~~l~~l~~~~~~~~---~~~l~~~l~~~l~-------------------------------------~~~~~~r~aal~~ 391 (872)
.++..++..+++.+ ++.+++.+...+. +..|++|++|+.+
T Consensus 277 ~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~ 356 (1230)
T 1u6g_C 277 QAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKC 356 (1230)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHH
Confidence 99999999988764 4455666554432 1248899999999
Q ss_pred HHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCC------------CccccCcccHHHH
Q 002877 392 FGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPAT------------GFSVISPENLQRI 459 (872)
Q Consensus 392 l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~~~~~~~~~~ 459 (872)
++.++... ++.+.+++..++|.+...+.|+++.||..++.+++.+......... +.......+++.+
T Consensus 357 l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 435 (1230)
T 1u6g_C 357 LDAVVSTR-HEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI 435 (1230)
T ss_dssp HHHHHTTC-CTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHH
T ss_pred HHHHHHhc-hhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHH
Confidence 99999865 3668889999999999999999999999999999988775532000 0000113466778
Q ss_pred HHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcC
Q 002877 460 LTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCS 538 (872)
Q Consensus 460 l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~ 538 (872)
++.+.+.+.+ ++.+|.+++.+++.++..+ ++.+.+|++.+++.++..+.... ....++..++.++..++...
T Consensus 436 l~~l~~~l~~~~~~vr~~~~~~L~~l~~~~------~~~l~~~l~~ll~~l~~~L~d~~-~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVL------PGALTQHIPVLVPGIIFSLNDKS-SSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHS------TTTTGGGHHHHHHHHHHHTTCSS-SCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHc------hhhhHHHHHHHHHHHHHHHcCCC-CcchHHHHHHHHHHHHHHhC
Confidence 8888888888 9999999999999999987 77788999999999999998432 12467889999999998877
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCc-cchhhchhhHHHHHHHHHHH
Q 002877 539 NITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTD-ATKSFILQTADQIMVLFLRV 617 (872)
Q Consensus 539 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 617 (872)
+...+.+|++.++|.++..+.+ ....++..++.++..+++.++... .....+.||++.+++.++..
T Consensus 509 ~~~~~~~~l~~llp~L~~~l~d-------------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 575 (1230)
T 1u6g_C 509 SPQVFHPHVQALVPPVVACVGD-------------PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575 (1230)
T ss_dssp CGGGGHHHHTTTHHHHHHHHTC-------------SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHhHHHHHHHHHHHHHcc-------------cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence 6244889999999999875542 123456677888999998887510 01116789999999999999
Q ss_pred H--ccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc-CCccccHHHHH
Q 002877 618 F--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD-DKVLPFCDGIM 694 (872)
Q Consensus 618 l--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~ 694 (872)
+ .+.+..+|+.++.+++.++...|..+.++++.+++.+...+.++. .|..++.+++.++.... ..+.+|++.++
T Consensus 576 l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~---~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 576 LKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI---TRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp HSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS---HHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch---hHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 9 556789999999999999999999999999999999998887643 67788899988876442 46789999999
Q ss_pred HHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHh
Q 002877 695 SLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSG 774 (872)
Q Consensus 695 ~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 774 (872)
+.+...+.++ ++.+|.+++.+++.++...+..+. .+.+.+.+...+.. .++.| ......+++++..
T Consensus 653 ~~L~~~l~~~--~~~~r~~a~~al~~l~~~~~~~~~--~~~v~~~l~~ll~l---l~~~D-------~~~~~~~~~~L~~ 718 (1230)
T 1u6g_C 653 PILASFLRKN--QRALKLGTLSALDILIKNYSDSLT--AAMIDAVLDELPPL---ISESD-------MHVSQMAISFLTT 718 (1230)
T ss_dssp HHHHHHTTSC--CHHHHHHHHHHHHHHHHHCCTTCC--HHHHHHHHTTCGGG---SCTTC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CHHHHHHHHHHHHHHHhcccccCC--HHHHHHHHHHHHhh---cCcch-------HHHHHHHHHHHHH
Confidence 9999999877 788999999999999999876542 23333333222111 11111 1345566777777
Q ss_pred HhhccchhhhhhhhhhHHHHHHHHHHHhcC
Q 002877 775 ILQGFKSARAEVMMPYAQHLLQFIELIFKD 804 (872)
Q Consensus 775 ~~~~l~~~~~~~~~~~~~~il~~l~~~~~~ 804 (872)
++...+. .+.++.+.+++.+...+..
T Consensus 719 l~~~~~~----~~~~~~~~~l~~~~~~l~~ 744 (1230)
T 1u6g_C 719 LAKVYPS----SLSKISGSILNELIGLVRS 744 (1230)
T ss_dssp HTTSCGG----GGGGTTTTTHHHHHHHHTC
T ss_pred HHHhCch----hHHHhHHhHHHHHHHHHcC
Confidence 7665433 3445566666666555443
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=7.9e-33 Score=316.13 Aligned_cols=572 Identities=14% Similarity=0.125 Sum_probs=443.9
Q ss_pred HHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhh
Q 002877 94 KDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDE 173 (872)
Q Consensus 94 ~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~ 173 (872)
-..++..+.++++.+|..++..++.++....|...|+++++.|.+.. ++ ++.+|..+...++.++...++ ..+
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~--~~~vr~~~~~~L~~~~~~~~~----~~~ 84 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YD--EDEVLLALAEQLGTFTTLVGG----PEY 84 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CC--CHHHHHHHHHHHTTCSGGGTS----GGG
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CC--cHHHHHHHHHHHHHHHhccCc----HHH
Confidence 34788889999999999999999999987655457899999998876 55 678999999999887776532 345
Q ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhh
Q 002877 174 VNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYY 253 (872)
Q Consensus 174 ~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (872)
...+++.+...+.+ ++..||..|.+++..+...... ....+.+++.+..+.+++++..|..++.++..+....+
T Consensus 85 ~~~ll~~L~~l~~~--~~~~vR~~a~~~L~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 85 VHCLLPPLESLATV--EETVVRDKAVESLRAISHEHSP----SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp GGGGHHHHHHHTTS--SCHHHHHHHHHHHHHHHTTSCH----HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred HHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 67788888777776 6889999999999997754332 22234577888888888899999999999998876554
Q ss_pred hhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcc
Q 002877 254 EVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQ 333 (872)
Q Consensus 254 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 333 (872)
. ...+.+++.+.....++++.+|..|++.|..+++... -+.+.+.++|.+...+.+
T Consensus 159 ~---~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--------------------~~~~~~~l~~~l~~~~~d- 214 (588)
T 1b3u_A 159 S---AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--------------------LDNVKSEIIPMFSNLASD- 214 (588)
T ss_dssp H---HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--------------------HHHHHHTHHHHHHHHHTC-
T ss_pred H---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--------------------HHhHHHHHHHHHHHHhcC-
Confidence 3 2345677877778889999999999999999987521 022345677777766532
Q ss_pred cCCcccCCCCcchhhhHHHHHHHHHhhcCC-cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHH
Q 002877 334 EEDQDQDDSIWNISMAGGTCLGLVARTVGD-EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGF 412 (872)
Q Consensus 334 ~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~ 412 (872)
+ .|.+|..|..++..++...+. ...+.++|.+...+.+++|.+|.+++.+++.++...+++ .+.+.++
T Consensus 215 ------~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~ 283 (588)
T 1b3u_A 215 ------E--QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLV 283 (588)
T ss_dssp ------S--CHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHH
T ss_pred ------C--cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHH
Confidence 1 278999999999999998873 456778899999999999999999999999998765422 2456789
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccC
Q 002877 413 DFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDA 491 (872)
Q Consensus 413 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~ 491 (872)
+.+.+.++|+++.||..++++++.++...+.. .....+.+.+++.+...+.| ++.||..++++++.++..+
T Consensus 284 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~--- 355 (588)
T 1b3u_A 284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-----CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL--- 355 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT-----THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH---
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh-----hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999999877641 01124678889999888888 9999999999999999877
Q ss_pred CCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcch
Q 002877 492 GPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDD 571 (872)
Q Consensus 492 ~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (872)
+. ....+.++|.+...++ | ++..||..++++++.+....+ .+ .+.+.++|.+...+.
T Consensus 356 ---~~--~~~~~~l~p~l~~~l~--d-~~~~Vr~~a~~~l~~l~~~~~-~~--~~~~~~lp~l~~~~~------------ 412 (588)
T 1b3u_A 356 ---GK--DNTIEHLLPLFLAQLK--D-ECPEVRLNIISNLDCVNEVIG-IR--QLSQSLLPAIVELAE------------ 412 (588)
T ss_dssp ---CH--HHHHHHTHHHHHHHHT--C-SCHHHHHHHHTTCHHHHHHSC-HH--HHHHHHHHHHHHHHT------------
T ss_pred ---hH--hHHHHHHHHHHHHHhC--C-CchHHHHHHHHHHHHHHHhcC-HH--HHHHHHHHHHHHHhc------------
Confidence 32 1235677888888886 3 346789999999999998877 32 244566666655332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHH
Q 002877 572 REKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF 651 (872)
Q Consensus 572 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i 651 (872)
+....+|..++.+++.++..++. .+ +.+.+++.+...+.+.+..+|+.++.+++.++...+..+ +++.+
T Consensus 413 -d~~~~vr~~~~~~l~~l~~~~~~------~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~l 481 (588)
T 1b3u_A 413 -DAKWRVRLAIIEYMPLLAGQLGV------EF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATI 481 (588)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCG------GG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHT
T ss_pred -CCCchHHHHHHHHHHHHHHHcCH------HH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHH
Confidence 12346788899999999998887 32 235688889999999999999999999999999887653 46788
Q ss_pred HHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhh
Q 002877 652 YQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEK 731 (872)
Q Consensus 652 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 731 (872)
+|.+...+.+ .++.+|..++.+++.++...+.. .|.+.+++.+.+.+.++ ++++|..++.+++.++..+|..+..
T Consensus 482 lp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~ 556 (588)
T 1b3u_A 482 IPKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDNSTLQ 556 (588)
T ss_dssp HHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhchhhhH
Confidence 9988876654 45679999999999999988743 47889999999999887 7899999999999999988875432
Q ss_pred hHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhH
Q 002877 732 YVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGI 775 (872)
Q Consensus 732 ~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 775 (872)
+.++|.+... .. | .+.++|..+..++..+
T Consensus 557 --~~~~p~l~~l-~~-------d-----~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 557 --SEVKPILEKL-TQ-------D-----QDVDVKYFAQEALTVL 585 (588)
T ss_dssp --HHHHHHHHHH-TT-------C-----SSHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHH-cC-------C-----CchhHHHHHHHHHHHh
Confidence 5666666553 11 1 1146788777776554
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=6.7e-31 Score=300.11 Aligned_cols=572 Identities=13% Similarity=0.097 Sum_probs=431.3
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHh
Q 002877 132 LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALT 211 (872)
Q Consensus 132 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 211 (872)
-+..+++.+.++ ++..|..|+..++.++...++ ....+.++|.+...+ + ++.+||..+.++|+.+...++.
T Consensus 11 ~i~~l~~~l~s~--~~~~R~~A~~~l~~i~~~~~~----~~~~~~l~~~L~~~~-d--~~~~vr~~~~~~L~~~~~~~~~ 81 (588)
T 1b3u_A 11 PIAVLIDELRNE--DVQLRLNSIKKLSTIALALGV----ERTRSELLPFLTDTI-Y--DEDEVLLALAEQLGTFTTLVGG 81 (588)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHTHHHHHHHSCH----HHHHHTHHHHHHHTC-C--CCHHHHHHHHHHHTTCSGGGTS
T ss_pred cHHHHHHHhhcc--cHHHHHHHHHhHHHHHHHhCH----HHHHHHHHHHHHHhc-C--CcHHHHHHHHHHHHHHHhccCc
Confidence 478889999998 899999999999998876642 344667888887766 4 5789999999999976654332
Q ss_pred hhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhH
Q 002877 212 NFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICD 291 (872)
Q Consensus 212 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~ 291 (872)
. .....+++.+.....++++.+|..+++.+..++...+.. ...+.+++.+....++++..+|..++..+..+..
T Consensus 82 ~----~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 82 P----EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp G----GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT
T ss_pred H----HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1 122347777777778889999999999999999876542 1112345555555567788899999988887765
Q ss_pred hhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC-cchhchH
Q 002877 292 EEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD-EVVPLVM 370 (872)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~ 370 (872)
.-. ....+.++|.+...+.+ + .+.+|.++..+++.++...+. ...+.++
T Consensus 156 ~~~---------------------~~~~~~l~~~l~~l~~d-------~--~~~VR~~a~~~l~~l~~~~~~~~~~~~l~ 205 (588)
T 1b3u_A 156 RVS---------------------SAVKAELRQYFRNLCSD-------D--TPMVRRAAASKLGEFAKVLELDNVKSEII 205 (588)
T ss_dssp TSC---------------------HHHHHHHHHHHHHHHTC-------S--CHHHHHHHHHHHHHHHHTSCHHHHHHTHH
T ss_pred hcC---------------------HHHHHHHHHHHHHHhCC-------C--CHHHHHHHHHHHHHHHHHhcHHhHHHHHH
Confidence 311 11234677777665532 1 178999999999999998874 4567889
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccc
Q 002877 371 PFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSV 450 (872)
Q Consensus 371 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
|.+...+++++|.+|.+++.+++.++....+ ....+.++|.+.+.++|+++.||.+++.+++.++...+.
T Consensus 206 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~------- 275 (588)
T 1b3u_A 206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP------- 275 (588)
T ss_dssp HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-------
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-------
Confidence 9999999999999999999999999886642 234557888899999999999999999999999987653
Q ss_pred cCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCch--hhHHHHHHHHHHhhccCCCcchhHHHHH
Q 002877 451 ISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLS--PYLTSIIAELLRAADRTDVGGSKLRSAA 527 (872)
Q Consensus 451 ~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~--~~~~~il~~l~~~l~~~~~~~~~vr~~a 527 (872)
..+.+.+++.+...+.| ++.||..|+.+++.+++.+ +.... ++.+.++|.+...++ + .+..+|..+
T Consensus 276 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~------~~~~~~~~~~~~l~p~l~~~l~--d-~~~~vR~~a 344 (588)
T 1b3u_A 276 --EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL------SADCRENVIMSQILPCIKELVS--D-ANQHVKSAL 344 (588)
T ss_dssp --HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS------CTTTHHHHHHHTHHHHHHHHHT--C-SCHHHHHHH
T ss_pred --ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh------ChhhhhhHHHHHHHHHHHHHhc--C-CCHHHHHHH
Confidence 12456788888899998 9999999999999999887 33322 567788888877776 2 345677777
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH
Q 002877 528 YETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA 607 (872)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 607 (872)
..+++.++...+ . .. ..
T Consensus 345 ~~~l~~l~~~~~-------------------------------------------------------~------~~--~~ 361 (588)
T 1b3u_A 345 ASVIMGLSPILG-------------------------------------------------------K------DN--TI 361 (588)
T ss_dssp HTTGGGGHHHHC-------------------------------------------------------H------HH--HH
T ss_pred HHHHHHHHHHhh-------------------------------------------------------H------hH--HH
Confidence 766666655444 1 10 12
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCcc
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVL 687 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 687 (872)
+.+++.+...+.+.++.+|..++.+++.+....+.. .+.+.++|.+...+.+ .++.+|..++.+++.++...+..+
T Consensus 362 ~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~- 437 (588)
T 1b3u_A 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAED-AKWRVRLAIIEYMPLLAGQLGVEF- 437 (588)
T ss_dssp HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCGGG-
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHcCHHH-
Confidence 345566667777888899999999999988776543 2456788888777765 457799999999999999888653
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHH
Q 002877 688 PFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSS 767 (872)
Q Consensus 688 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 767 (872)
+.+.+++.+.+.+.++ +..+|..++.+++.++..+|+.+ +++.++|.+...... ....+|..
T Consensus 438 -~~~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~-------------~~~~~R~~ 499 (588)
T 1b3u_A 438 -FDEKLNSLCMAWLVDH--VYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD-------------PNYLHRMT 499 (588)
T ss_dssp -CCHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC-------------SCHHHHHH
T ss_pred -HHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC-------------CCHHHHHH
Confidence 3467889999999877 78899999999999999988754 467777777654221 11367888
Q ss_pred HHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHH
Q 002877 768 IFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSEC 847 (872)
Q Consensus 768 ~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~ 847 (872)
++.++..+...++. ..|.+.+++.+.+.+.| .++++|..++.+++.++..+|... +. +.+.+.+...
T Consensus 500 a~~~l~~l~~~~~~------~~~~~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~----~~-~~~~p~l~~l 566 (588)
T 1b3u_A 500 TLFCINVLSEVCGQ------DITTKHMLPTVLRMAGD--PVANVRFNVAKSLQKIGPILDNST----LQ-SEVKPILEKL 566 (588)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHTHHHHHHGGGC--SCHHHHHHHHHHHHHHGGGSCHHH----HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH------HHHHHHHHHHHHhhCCC--CCchHHHHHHHHHHHHHHHhchhh----hH-HHHHHHHHHH
Confidence 88888877776543 23678888888888776 568999999999999999998753 22 3445555556
Q ss_pred hcCCcHHHHHHHHHHHHHHH
Q 002877 848 LRSDDEQLKETAGWTQGMIN 867 (872)
Q Consensus 848 ~~~~~~~~~~~a~~~~~~~~ 867 (872)
..|.++++|..|.+|++.+.
T Consensus 567 ~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 567 TQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp TTCSSHHHHHHHHHHHHHTT
T ss_pred cCCCchhHHHHHHHHHHHhh
Confidence 88999999999999998764
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.98 E-value=6.1e-29 Score=299.75 Aligned_cols=507 Identities=14% Similarity=0.193 Sum_probs=352.8
Q ss_pred chHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHh
Q 002877 3 MEITQFLLAAQSA--DANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAK 80 (872)
Q Consensus 3 ~~~~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
+++.++|+.+++| |++.|++|+++|++++++ |+++..+..+|.+.+.+..+|++|+++|||.+. .
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~-----------~ 77 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVK-----------F 77 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH-----------H
Confidence 4588999999998 778999999999999998 667677777666556789999999999999885 5
Q ss_pred hhhcCChHHHHHHHHHHHHhhcC-------CChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHH
Q 002877 81 QWLAIDISYKSQVKDLLLRTLAS-------PVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQAT 153 (872)
Q Consensus 81 ~w~~l~~~~~~~i~~~Ll~~l~~-------~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~a 153 (872)
.|..++++.+..||+.+++.+.. +++.||++++.+++.|+++++| +.||++++.+.+.++++ +..++.+
T Consensus 78 ~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~~---~~~~e~~ 153 (1204)
T 3a6p_A 78 RWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQG---ETQTELV 153 (1204)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHTC---HHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcCC---HHHHHHH
Confidence 78899999999999999998753 4589999999999999999999 49999999999998764 5678999
Q ss_pred HHHHHHhhhccC-cc------------ccchhhHHHHHHHHHhcccCC-----------------CCCHHHHHHHHHHHH
Q 002877 154 LETLGYVCEEIS-HQ------------DLVQDEVNAVLTAVVQGMNLA-----------------EHSAEVRLAATRALY 203 (872)
Q Consensus 154 l~~l~~l~~~~~-~~------------~l~~~~~~~l~~~l~~~l~~~-----------------~~~~~vr~~al~~l~ 203 (872)
+.+|..++++.. .+ .+ ...++.+++.+.+.+.+. +++..++..+++|+.
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l-~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTL-TQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 999999998732 11 11 223456666666655431 123467888899888
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhh-------------------------------
Q 002877 204 NALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTY------------------------------- 252 (872)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------------------------------- 252 (872)
+++.|.+.++..+. ...+++.++..+. ++++|..|++||..++..+
T Consensus 233 ~~l~Wi~~~~i~~~-~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 233 GYIDWVSMSHITAE-NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTTSCHHHHHTT-TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHHhccCHHHHHhc-cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 77665432211100 0123333333322 2334444444444444322
Q ss_pred ------------------------hhh--------hHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhc
Q 002877 253 ------------------------YEV--------LEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFE 300 (872)
Q Consensus 253 ------------------------~~~--------~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 300 (872)
... ..+++..++++++....+++..+...+++||..+.+....
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~----- 384 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEIL----- 384 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTT-----
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccc-----
Confidence 111 1122345566666666677778888888899888765210
Q ss_pred CCCCCCCCCCchHHHHHhHHhhHHHH---HHHHhcccCCc---------ccC------CCCcchhhhHHHHHHHHHhhcC
Q 002877 301 NPETGDSDSPNYHFIEKARSSLVPML---LETLLKQEEDQ---------DQD------DSIWNISMAGGTCLGLVARTVG 362 (872)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~l~~l~~~l---~~~l~~~~~d~---------~~d------~~~~~~r~~a~~~l~~l~~~~~ 362 (872)
.......++++.+++.+ +..+.++++++ |+| +..|+.|+...+.++.++...|
T Consensus 385 ---------~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 385 ---------SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 01123567788888888 44444433211 011 1346899999999999999888
Q ss_pred CcchhchHHHHHhhcc-------------------------CCCcchHHHHHHHHHHhhcCCCccch-hHhHH-hHHHHH
Q 002877 363 DEVVPLVMPFVEANIV-------------------------KSDWRCREAATYAFGSVLEGPTIDKL-APLVH-AGFDFL 415 (872)
Q Consensus 363 ~~~~~~l~~~l~~~l~-------------------------~~~~~~r~aal~~l~~i~~~~~~~~~-~~~l~-~l~~~l 415 (872)
...++.+.+.+.+.+. ++.|...++....+.++.+++. +.. .++++ .+++.+
T Consensus 456 ~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~-~~~e~~~l~~~~~~~L 534 (1204)
T 3a6p_A 456 KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMF-RTLNREEIPVNDGIEL 534 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHH-HHSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHh-cccccccccHHHHHHH
Confidence 7777666666643332 2347778888888888776551 111 11111 234444
Q ss_pred HHhc---CCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-------------ChHHHHHHHH
Q 002877 416 LNAM---RDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-------------APNVAEKVCG 479 (872)
Q Consensus 416 ~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-------------~~~v~~~a~~ 479 (872)
++.+ ...+|.+|.+.+.+++++..++.. .+++++.+++.++..+.+ +.++|.+|+.
T Consensus 535 l~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~--------~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~ 606 (1204)
T 3a6p_A 535 LQMVLNFDTKDPLILSCVLTNVSALFPFVTY--------RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACS 606 (1204)
T ss_dssp HHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT--------CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHH
Confidence 4442 446899999999999999999874 467999999999988754 2379999999
Q ss_pred HHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCC-CcchhHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHH
Q 002877 480 AIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTD-VGGSKLRSAAYETLNEVVRCSN-ITETSQIIAELLPAIMGR 557 (872)
Q Consensus 480 al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~-~~~~~vr~~a~~al~~l~~~~~-~~~~~~~~~~l~~~l~~~ 557 (872)
++..+++.+ ++.+.||++.|...+...+.... -.... +...++++..+....+ ......|++.+++++++.
T Consensus 607 al~~L~~~~------~~~L~p~~~~i~~~~~~~l~~~~~l~~~e-~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~ 679 (1204)
T 3a6p_A 607 SIIKMCRDY------PQLVLPNFDMLYNHVKQLLSNELLLTQME-KCALMEALVLISNQFKNYERQKVFLEELMAPVASI 679 (1204)
T ss_dssp HHHHHHHHC------HHHHGGGHHHHHHHHHHHHHSTTTSCHHH-HHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------hHHHHHHHHHHHHHHHHHHhCcccccHHH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999998 88899999999999988876433 22233 7788899988865543 133466799999999998
Q ss_pred HHH
Q 002877 558 LGQ 560 (872)
Q Consensus 558 l~~ 560 (872)
|.+
T Consensus 680 w~~ 682 (1204)
T 3a6p_A 680 WLS 682 (1204)
T ss_dssp HSC
T ss_pred Hcc
Confidence 874
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.92 E-value=1.5e-19 Score=216.29 Aligned_cols=694 Identities=10% Similarity=0.107 Sum_probs=429.9
Q ss_pred CCHHHHHHHHHHHHHHHhcC----------hHH----HHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHh
Q 002877 15 ADANIRNEAEANLRQLQQQN----------LPG----FLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAK 80 (872)
Q Consensus 15 ~~~~~r~~A~~~L~~~~~~~----------~~~----~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~ 80 (872)
.+.++|..|-..|+...+.. +++ .=..+++.+.++ +..+|..++..+.......+ +.
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~-------p~ 119 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDF-------PD 119 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHS-------TT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhC-------cc
Confidence 46889999999998754321 111 234566666653 48999999988887664322 24
Q ss_pred hhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcC--C--CCch-------HHHHHH-------HHhhcc
Q 002877 81 QWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIP--Q--KQWP-------ELIRSL-------LNNMTQ 142 (872)
Q Consensus 81 ~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p--~--~~~~-------~ll~~l-------~~~l~~ 142 (872)
.|+. +.+.|++.+.+++...+..+-.++..+.+..-. . ..++ .+++.+ .+.+++
T Consensus 120 ~Wp~--------ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~ 191 (960)
T 1wa5_C 120 RWPT--------LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITA 191 (960)
T ss_dssp TCTT--------HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chhH--------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5643 456777778777777777788888888764311 0 0111 122222 222443
Q ss_pred CCcc-HHHH------HHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCC-----------C--CHHHHHHHHHHH
Q 002877 143 QDSL-AALK------QATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAE-----------H--SAEVRLAATRAL 202 (872)
Q Consensus 143 ~~~~-~~~r------~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~-----------~--~~~vr~~al~~l 202 (872)
++.+ ...+ ..++.++..+.....++.+ ..++...++.+.+.+.... . ...+|+.+++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l 270 (960)
T 1wa5_C 192 NENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF-EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELV 270 (960)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH-HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHH
Confidence 3111 1122 2244445443322114444 4556666666665553210 0 146888899999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHhhc-----CCcHHHHHHHHHHHHHHHHhh--hhhhH--HhHHHHH-HHHHHHhc
Q 002877 203 YNALDFALTNFQNEMERNYIMKVVCETAK-----SKEVEIRQAAFECLVSIASTY--YEVLE--PYMQTLF-ELTSNAVK 272 (872)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~~~~~~~~l~~l~~~~--~~~~~--~~l~~l~-~~~~~~~~ 272 (872)
..++......+... .+.+++.+.+.+. ..++.++..++++|..+++.. ...+. +++..++ ..++..+.
T Consensus 271 ~~l~~~~~~~f~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~ 348 (960)
T 1wa5_C 271 QLYTTRYEDVFGPM--INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVT 348 (960)
T ss_dssp HHHHHHCHHHHHHH--HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHS
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcC
Confidence 88776544433221 1224444444332 346789999999999987543 23443 7777777 44444332
Q ss_pred ----C-------------------CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHH
Q 002877 273 ----G-------------------DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLET 329 (872)
Q Consensus 273 ----~-------------------~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 329 (872)
+ +..+.|..|..++..++.. +-+..++.+++.+...
T Consensus 349 ~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~---------------------~~~~v~~~~l~~i~~~ 407 (960)
T 1wa5_C 349 LREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEK---------------------NEVLVTNIFLAHMKGF 407 (960)
T ss_dssp CCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHH---------------------cchhHHHHHHHHHHHH
Confidence 1 1124677777788777765 1234455566666665
Q ss_pred HhcccCCcccCCCCcchhhhHHHHHHHHHhhc-----C-C------cchhchHHHHHhhccCC---CcchHHHHHHHHHH
Q 002877 330 LLKQEEDQDQDDSIWNISMAGGTCLGLVARTV-----G-D------EVVPLVMPFVEANIVKS---DWRCREAATYAFGS 394 (872)
Q Consensus 330 l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~-----~-~------~~~~~l~~~l~~~l~~~---~~~~r~aal~~l~~ 394 (872)
+.....+. . ..|..|.+|..+++.++... + . .+.+.+...+...+.++ ++.+|.+++++++.
T Consensus 408 l~~~~~~~-~--~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~ 484 (960)
T 1wa5_C 408 VDQYMSDP-S--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYT 484 (960)
T ss_dssp HHHHHC-------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHH
T ss_pred HHHhccCc-c--hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHH
Confidence 55322211 1 22999999999999998642 1 1 23233333344444555 78899999999999
Q ss_pred hhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhcc-----CCCCCccccCcccHHHHHHHHHHHhhc
Q 002877 395 VLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLH-----CPATGFSVISPENLQRILTVLLESIKD 469 (872)
Q Consensus 395 i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~l~~~l~d 469 (872)
+++... ..++..+++.+++.+.|+++.||.+|++++.++++... ...+. .....+|++.+++.|+..+..
T Consensus 485 ~~~~~~----~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~-~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 485 FRNQLT----KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFH-KEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp TGGGSC----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSC-GGGTTTTHHHHHHHHHHHHHT
T ss_pred HHhhCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccccc-HHHhhhhHHHHHHHHHHHHHh
Confidence 998652 35788999999999999999999999999999987532 00100 124678999999999988875
Q ss_pred C----hH--HHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccC--CCcchhHHHHHHHHHHHHHhcCCCc
Q 002877 470 A----PN--VAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRT--DVGGSKLRSAAYETLNEVVRCSNIT 541 (872)
Q Consensus 470 ~----~~--v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~--~~~~~~vr~~a~~al~~l~~~~~~~ 541 (872)
. ++ ....+..+++.++... ++.+.||+..+++.+...+... +.++..++..++++++.+++..+.+
T Consensus 560 ~~~~~~~~~~~e~l~~al~~vv~~~------~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~ 633 (960)
T 1wa5_C 560 HGSSPEKLAENEFLMRSIFRVLQTS------EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ 633 (960)
T ss_dssp TCCCHHHHTSCHHHHHHHHHHHHHH------TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG
T ss_pred ccCCCCcccccHHHHHHHHHHHHHH------HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 2 22 4467889999999988 7888999999999998877642 2234556778999999999985424
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHH--HHHc
Q 002877 542 ETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFL--RVFA 619 (872)
Q Consensus 542 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~l~ 619 (872)
.+..+.+.++|.+...+.+.. .++...+...+..+.+.. . .+.+++.++++.+. ..+.
T Consensus 634 ~~~~~~~~~~p~~~~iL~~~~-------------~~~~~~~~~i~~~l~~~~-~------~~~~~~~~~~~~l~~~~~~~ 693 (960)
T 1wa5_C 634 NLPLLVDSMMPTFLTVFSEDI-------------QEFIPYVFQIIAFVVEQS-A------TIPESIKPLAQPLLAPNVWE 693 (960)
T ss_dssp GHHHHHHHHHHHHHHHHHTTC-------------TTTHHHHHHHHHHHHHHC-S------SCCTTTGGGHHHHTSGGGGC
T ss_pred hHHHHHHHHHHHHHHHHHhhh-------------HhhHHHHHHHHHHHHHhc-c------CCCHHHHHHHHHHcCHHHhc
Confidence 677788889998888776421 123345677777777665 4 67788888888887 6665
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCC-ccccHHHHHHHHH
Q 002877 620 CRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDK-VLPFCDGIMSLLL 698 (872)
Q Consensus 620 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~ 698 (872)
... .+ .....++..++...++.+.. ++.++..+.+.+.+.. ....++.+++.++..++.. +.||++.+++.++
T Consensus 694 ~~~-~~-~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~---~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~ 767 (960)
T 1wa5_C 694 LKG-NI-PAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASKA---YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLL 767 (960)
T ss_dssp CTT-TH-HHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTT---THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH
T ss_pred CCC-Cc-hhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCCc---ccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 542 22 34455566655544444332 3445554444444332 2378999999999999987 9999999999999
Q ss_pred HHhcCCCCCCCCchhHHHHHHHHHHhhccc-hhhhHH---------HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHH
Q 002877 699 NALSNSQLNRSVKPPILSCFGDIALAIGVH-FEKYVP---------HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSI 768 (872)
Q Consensus 699 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~---------~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 768 (872)
..++.+. ....+...+..++.++..++.. +.+.++ .+...++..+..-.+ ...|..+
T Consensus 768 ~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~------------~~erk~~ 834 (960)
T 1wa5_C 768 QRLQNSK-TERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGN------------LLDRKIA 834 (960)
T ss_dssp HGGGSSC-CHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCS------------HHHHHHH
T ss_pred HHHhhCC-cHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccC------------HHHHHHH
Confidence 9998652 2334556667777777666654 333332 122233333222111 1345556
Q ss_pred HHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhc
Q 002877 769 FEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFK 803 (872)
Q Consensus 769 ~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~ 803 (872)
..++..++... ...+..+.+.+..++..+...+.
T Consensus 835 ~~gl~~ll~~~-~~~~~~~~~~~~~~~~~i~~l~~ 868 (960)
T 1wa5_C 835 LIGVLNMVING-QFFQSKYPTLISSTMNSIIETAS 868 (960)
T ss_dssp HHHHHHHHHSC-HHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cccchhHHHHHHHHHHHHHHHHh
Confidence 66666665543 22234455666666666666554
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.90 E-value=4.1e-20 Score=222.48 Aligned_cols=614 Identities=12% Similarity=0.089 Sum_probs=384.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 002877 190 HSAEVRLAATRALYNALDFALTNFQN---EMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFEL 266 (872)
Q Consensus 190 ~~~~vr~~al~~l~~~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~ 266 (872)
.+..+|..|..+|.+.+..-...+.. ...++.+++.+.+..+ ....+|...+.++..++...+. ..+.+++.
T Consensus 52 ~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~ 126 (971)
T 2x1g_F 52 KSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLG----EWPGAIEE 126 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC----C------H
T ss_pred CcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccc----cccHHHHH
Confidence 57899999999999988653333432 2235567777766553 3578999999999999988654 23344444
Q ss_pred HHHHhcCC------ChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCC-chHHHHHhHHhhHHHHHHHHhcccCCccc
Q 002877 267 TSNAVKGD------EEAVALQAVEFWSSICDEEIELQEFENPETGDSDSP-NYHFIEKARSSLVPMLLETLLKQEEDQDQ 339 (872)
Q Consensus 267 ~~~~~~~~------~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 339 (872)
++..+++. ++..+..++.+|..+++.-... . ....+. ....+...++.+++.+...+....++..
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~-----~--~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~- 198 (971)
T 2x1g_F 127 VINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVI-----H--TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVW- 198 (971)
T ss_dssp HHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHC-----C--CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhcc-----C--cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-
Confidence 44444332 4567888999999988642110 0 000000 0123445566777777777654432211
Q ss_pred CCCCcchhhhHHHHHHHHHhh--cCCcchhchHHHHHhhc----------------cCCCcchHHHHHHHHHHhhcCCCc
Q 002877 340 DDSIWNISMAGGTCLGLVART--VGDEVVPLVMPFVEANI----------------VKSDWRCREAATYAFGSVLEGPTI 401 (872)
Q Consensus 340 d~~~~~~r~~a~~~l~~l~~~--~~~~~~~~l~~~l~~~l----------------~~~~~~~r~aal~~l~~i~~~~~~ 401 (872)
+++.|.++..+.+|+...... .+......+++.+.. + .+++...|++++.++..+.+...+
T Consensus 199 ~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~ 277 (971)
T 2x1g_F 199 DAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC 277 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG
T ss_pred CccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc
Confidence 112368899999999988773 443344556665554 3 113467899999999999875432
Q ss_pred cchhHhHHhHHHHHHH-------hcCCCcH---HHHHHHHHHHHHHHhhccCCCC----CccccCcccHHHHHHHHHHHh
Q 002877 402 DKLAPLVHAGFDFLLN-------AMRDENN---HVKDTTAWTLSRIFELLHCPAT----GFSVISPENLQRILTVLLESI 467 (872)
Q Consensus 402 ~~~~~~l~~l~~~l~~-------~l~d~~~---~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~~~~~~~l~~l~~~l 467 (872)
+...+.+..++|.++. .+.+.+. ......+..+..+++....... ........++..+++.++...
T Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~ 357 (971)
T 2x1g_F 278 HNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCT 357 (971)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHH
Confidence 2333445555555543 2244442 6666777887777743321000 000012346677888887765
Q ss_pred h-----c-ChHHHHHHHHHHHHHHHhhcc-C-----CCCCCCchhhHHHHHHHHHHhhccCCCcc------------hhH
Q 002877 468 K-----D-APNVAEKVCGAIYYLAQGYED-A-----GPSSSLLSPYLTSIIAELLRAADRTDVGG------------SKL 523 (872)
Q Consensus 468 ~-----d-~~~v~~~a~~al~~l~~~~~~-~-----~~~~~~l~~~~~~il~~l~~~l~~~~~~~------------~~v 523 (872)
. . +..|...++..+..+++.... . ......+.+++..+++.++..+..+++++ ...
T Consensus 358 ~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~ 437 (971)
T 2x1g_F 358 DKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCY 437 (971)
T ss_dssp HCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHH
T ss_pred cCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHH
Confidence 2 2 678889999999888874310 0 00012345788888888888874322210 135
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhc
Q 002877 524 RSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFI 603 (872)
Q Consensus 524 r~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 603 (872)
|..+.+++..+....+ +. .+..+++.+-+.+..... ++ .....++.++.+++.+.++... ..
T Consensus 438 R~~~~~~l~~~~~~~~-~~---~l~~~~~~l~~~l~~~~~-------~~-~~w~~~eaal~~l~~iae~~~~------~~ 499 (971)
T 2x1g_F 438 RQDISDTFMYCYDVLN-DY---ILEILAAMLDEAIADLQR-------HP-THWTKLEACIYSFQSVAEHFGG------EE 499 (971)
T ss_dssp HHHHHHHHHHHHTTCT-TH---HHHHHHHHHHHHHHHHHH-------CT-TCCHHHHHHHHHHHHTTTC-----------
T ss_pred HHHHHHHHHHHHHHHh-HH---HHHHHHHHHHHHHHhccC-------CC-CcHHHHHHHHHHHHHHHhhcCh------hh
Confidence 7788888888887766 43 233333333333322100 00 1123456677778888776665 44
Q ss_pred hhhHHHHHHHHHHHHc-cCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHh
Q 002877 604 LQTADQIMVLFLRVFA-CRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 604 ~~~~~~l~~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 682 (872)
.++++.+++.+..+.. +.++.+|..++.++++++....... .|++.++|.+...+ + +.++..|+.++..+++..
T Consensus 500 ~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 500 KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp -CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHH
Confidence 5677888884443332 3478999999999999998776544 78999999999888 3 569999999999999999
Q ss_pred cCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHhccccCCCchHHHHHH
Q 002877 683 DDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG-VHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYG 761 (872)
Q Consensus 683 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~ 761 (872)
+..+.||++.++..+...+..+..+...+..++.+++.++...+ +...+|+..+++.+...++...+....+++.
T Consensus 575 ~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~---- 650 (971)
T 2x1g_F 575 QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA---- 650 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHH----
T ss_pred HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh----
Confidence 88899999999999999999865567888999999999998775 7778888888888888766432211101111
Q ss_pred HHHHHHHHHHHHhHhhccchhh---------hhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhh
Q 002877 762 NQLRSSIFEAYSGILQGFKSAR---------AEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKL 832 (872)
Q Consensus 762 ~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 832 (872)
.......++.+.+++.+++... .+.+.++.+.+++.+...+.....+..+...++.+++.++..+|....
T Consensus 651 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~- 729 (971)
T 2x1g_F 651 RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQ- 729 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--C-
T ss_pred HHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhcc-
Confidence 1122334556666666655421 345788899999998888755334679999999999999999988643
Q ss_pred hccCchHHHHHHHH
Q 002877 833 LFKDSSFCNDFMSE 846 (872)
Q Consensus 833 ~~~~~~~v~~ll~~ 846 (872)
++..+++..++..
T Consensus 730 -p~l~~~~~~l~~~ 742 (971)
T 2x1g_F 730 -PMLQDLCLFIVAS 742 (971)
T ss_dssp -THHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHH
Confidence 2334455555543
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.89 E-value=1.7e-17 Score=200.01 Aligned_cols=662 Identities=11% Similarity=0.097 Sum_probs=418.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhcC--C-CChhHHHHHHHHHhhccc----CCcc-c
Q 002877 6 TQFLLAAQSADANIRNEAEANLRQLQQQ----NLPGFLLSLSVELVNN--E-KPTESRRLAGIMLKNSLD----AKDA-T 73 (872)
Q Consensus 6 ~~~l~~~~s~~~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~--~-~~~~vr~~a~~~l~~~i~----~~~~-~ 73 (872)
.+.+....++.+.+|++.-..+..+..+ ++|+++..+.+.+.+. + .++..+..+..+|+.... ..+. .
T Consensus 106 l~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~ 185 (963)
T 2x19_B 106 FTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQY 185 (963)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHH
Confidence 3344433334688999999999886665 4678888888877541 0 144566666666665431 1110 0
Q ss_pred chHHHHhhhhcCChHHHHHHHHHHHHhhcCCC--hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHH
Q 002877 74 TKEDLAKQWLAIDISYKSQVKDLLLRTLASPV--PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQ 151 (872)
Q Consensus 74 ~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~--~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~ 151 (872)
++.... ..+. +....+.+.+.+.+.+.+ ..++..+..++...+....+...+..+++.+++.+. ++..|.
T Consensus 186 ~r~~~~---~~l~-~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~----~~~~~~ 257 (963)
T 2x19_B 186 RKGLVR---TSLA-VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ----DSELFD 257 (963)
T ss_dssp ---------CCSG-GGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT----STTTHH
T ss_pred HHHHHH---HHHH-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC----CchHHH
Confidence 000000 1122 234455555666665542 247777777777666533222245889999998884 356789
Q ss_pred HHHHHHHHhhhccCccccchhhHHHHHHHHHhc-------ccCCCCCHHHHHHHHHHHHHHHHHHHhhhh----hhhHHH
Q 002877 152 ATLETLGYVCEEISHQDLVQDEVNAVLTAVVQG-------MNLAEHSAEVRLAATRALYNALDFALTNFQ----NEMERN 220 (872)
Q Consensus 152 ~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~-------l~~~~~~~~vr~~al~~l~~~~~~~~~~~~----~~~~~~ 220 (872)
.++.++..++....+... ...+..+++.++.. +.. .+.+......+.+..+.......+. ......
T Consensus 258 ~a~~~l~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~--~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 334 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRY-VNTLLKLIPLVLGLQEQLRQAVQN--GDMETSHGICRIAVALGENHSRALLDQVEHWQSFL 334 (963)
T ss_dssp HHHHHHHHHHTCTTGGGC-HHHHHHHHHHHHTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHcccccccC-HHHHHHHHHHHHhhHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH
Confidence 999999999875322222 34455555544432 222 2345555556666665543222221 111112
Q ss_pred HHHHHHHHhhcC-----CcHHHHHHHHHHHHHHHHhh-----------hhhhHHhHHHHHHHHHHHhcCCCh--------
Q 002877 221 YIMKVVCETAKS-----KEVEIRQAAFECLVSIASTY-----------YEVLEPYMQTLFELTSNAVKGDEE-------- 276 (872)
Q Consensus 221 ~ll~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~~-------- 276 (872)
.+++.+..++.. .++++...+++.|..+++.. ...+.+++..+++.++..+..+++
T Consensus 335 ~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~ 414 (963)
T 2x19_B 335 ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS 414 (963)
T ss_dssp HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCH
T ss_pred HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCh
Confidence 356666666653 35667888899998888732 234557777777777666643221
Q ss_pred -------HHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhh
Q 002877 277 -------AVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMA 349 (872)
Q Consensus 277 -------~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~ 349 (872)
+.|..+.+++..++... -...++.+++.+...+..... . ..|..+.+
T Consensus 415 de~~~~~~~r~~~~~~L~~~~~~~---------------------~~~~l~~~~~~l~~~l~~~~~---~--~~w~~~ea 468 (963)
T 2x19_B 415 DEKEQFRIYRVDISDTLMYVYEML---------------------GAELLSNLYDKLGRLLTSSEE---P--YSWQHTEA 468 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------THHHHHHHHHHHHHHHHTCCC---S--CCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHc---------------------cHHHHHHHHHHHHHHHHhcCC---C--CchHHHHH
Confidence 12344444444444321 122333444444444432211 1 23999999
Q ss_pred HHHHHHHHHhhcCC---cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHH
Q 002877 350 GGTCLGLVARTVGD---EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHV 426 (872)
Q Consensus 350 a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~v 426 (872)
+..+++.++....+ ..++.+++.+.. +.++++..|.+++.+++.+++... . -..+++.+++.++..+.+ +.|
T Consensus 469 al~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~-~-~~~~l~~vl~~l~~~l~~--~~V 543 (963)
T 2x19_B 469 LLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLA-D-HPVMINSVLPLVLHALGN--PEL 543 (963)
T ss_dssp HHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHH-H-CHHHHTTTHHHHHHHTTC--GGG
T ss_pred HHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHH-h-CHHHHHHHHHHHHHHhCC--chH
Confidence 99999999988753 344555664443 344678899999999999987542 2 236888999999999976 889
Q ss_pred HHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhhccCCCCC-CCchhhH
Q 002877 427 KDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYYLAQGYEDAGPSS-SLLSPYL 502 (872)
Q Consensus 427 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~-~~l~~~~ 502 (872)
+..|++++.++++.+.. ...+|++.++..+...+.. ....+.....+++.++... + +...+|+
T Consensus 544 ~~~A~~al~~l~~~~~~-------~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~------~~~~~~~~~ 610 (963)
T 2x19_B 544 SVSSVSTLKKICRECKY-------DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL------QVEEILKNL 610 (963)
T ss_dssp HHHHHHHHHHHHHHTGG-------GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC------CHHHHHHHH
Confidence 99999999999987765 4668999999999888873 5788889999999998765 3 5667888
Q ss_pred HHHHHHHHHhhcc----CCC-cchhHHHHHHHHHHHHHhcCCCc----------------------ccHHHHHHHHHHHH
Q 002877 503 TSIIAELLRAADR----TDV-GGSKLRSAAYETLNEVVRCSNIT----------------------ETSQIIAELLPAIM 555 (872)
Q Consensus 503 ~~il~~l~~~l~~----~~~-~~~~vr~~a~~al~~l~~~~~~~----------------------~~~~~~~~l~~~l~ 555 (872)
..+++.+...+.. ..+ +....+...+++++.+++..+ . .+.++...++|.+.
T Consensus 611 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD-ISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQ 689 (963)
T ss_dssp HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC-SSCCC---------------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC-CCcccccccccccccCCCCCCCCchHHHHHHHHHHHH
Confidence 8888887776542 111 112234577888888888765 2 13556777777777
Q ss_pred HHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 002877 556 GRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGA 635 (872)
Q Consensus 556 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~ 635 (872)
..+.... ....+...++.++..++..++. .+.||++++++.++....... . ...+.+++.
T Consensus 690 ~~l~~~~-----------~~~~v~e~~~~~l~~~~~~~~~------~~~~~l~~~~~~l~~~~~~~~--~-~~~l~l~~~ 749 (963)
T 2x19_B 690 KVLSKWL-----------NDAQVVEAVCAIFEKSVKTLLD------DFAPMVPQLCEMLGRMYSTIP--Q-ASALDLTRQ 749 (963)
T ss_dssp HHHHHHT-----------TCHHHHHHHHHHHHHHHHHSSS------TTGGGHHHHHHHHHHHHHHSC--C-HHHHHHHHH
T ss_pred HHHHhcc-----------CchHHHHHHHHHHHHHHHhhcc------cccccHHHHHHHHHHHHHcCC--c-cHHHHHHHH
Confidence 6666431 1125667889999999999999 889999999998888776531 1 234666777
Q ss_pred HHHHhh--hHHHhhhHHH----HHHHHhhhc-c-cchHhHHHHHHHHHHHHHHHhcCCcc--cc-HHHHHHHHHHHhcCC
Q 002877 636 LAYATG--PEFAKYMPEF----YQYLQMGLQ-N-SEEYQVCAITVGVVGDVCRALDDKVL--PF-CDGIMSLLLNALSNS 704 (872)
Q Consensus 636 l~~~~~--~~~~~~l~~i----~~~l~~~l~-~-~~~~~v~~~a~~~l~~l~~~~~~~~~--~~-~~~i~~~l~~~l~~~ 704 (872)
++..++ +.+.++++.+ +..+...+. + .+.++++...+.+++.+....+..+. +. +..+++.+...+...
T Consensus 750 li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 829 (963)
T 2x19_B 750 LVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFP 829 (963)
T ss_dssp HHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCS
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC
Confidence 776332 2233444444 333333333 2 23588999999999999998875543 55 888999999999866
Q ss_pred CCCCCCchhHHHHHHHHHHhhc--cc----hhhhHHHHHHHHHHHHH
Q 002877 705 QLNRSVKPPILSCFGDIALAIG--VH----FEKYVPHALQMMQEAAK 745 (872)
Q Consensus 705 ~~~~~~~~~~~~~l~~l~~~~~--~~----~~~~l~~i~~~l~~~~~ 745 (872)
++.+...++.++.++....+ .. +..+.+.++..++..+.
T Consensus 830 --~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 830 --EAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp --CHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888899999999886543 22 23455666666666543
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.85 E-value=5.8e-19 Score=194.57 Aligned_cols=424 Identities=14% Similarity=0.145 Sum_probs=296.5
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCC
Q 002877 228 ETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDS 307 (872)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 307 (872)
..+.+++..+|+.|-+.|..+..... ..++..++..+.. .+.+..+|..|...+..+.+..-........ ..
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~~~---~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~---~~ 79 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVENL---PTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ---QR 79 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH---HH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCh---HHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHH---hh
Confidence 33557899999999999988654211 1222233333321 2346789999988887776431000000000 00
Q ss_pred CCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhc-CCcchhchHHHHHhhccCC--Ccch
Q 002877 308 DSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTV-GDEVVPLVMPFVEANIVKS--DWRC 384 (872)
Q Consensus 308 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~--~~~~ 384 (872)
+ ..+-.+....+-..++..+...+ ..+ ..++.++..++... +....|.+++.+.+.+.++ ++..
T Consensus 80 ~---~~l~~~~~~~ik~~ll~~l~~~~---------~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~ 146 (462)
T 1ibr_B 80 W---LAIDANARREVKNYVLQTLGTET---------YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHM 146 (462)
T ss_dssp H---HTSCHHHHHHHHHHHHHHTTCCC---------SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHH
T ss_pred h---hcCCHHHHHHHHHHHHHHhCCCC---------chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHH
Confidence 0 00001111234444555443211 345 77889999999875 4446788999999998888 8999
Q ss_pred HHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHH
Q 002877 385 REAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE--NNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTV 462 (872)
Q Consensus 385 r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (872)
|++++.+++.+++...++.+.++++.+++.+.+.+.|+ ++.||..|+++++.+..++.. ........+.+++.
T Consensus 147 r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-----~~~~~~~~~~l~~~ 221 (462)
T 1ibr_B 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NFDKESERHFIMQV 221 (462)
T ss_dssp HHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-----HHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHH
Confidence 99999999999976544567788899999999999998 799999999999998765442 00011112335666
Q ss_pred HHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHH-HHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcC--
Q 002877 463 LLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLT-SIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCS-- 538 (872)
Q Consensus 463 l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~-~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~-- 538 (872)
+...+.+ ++.+|..++.+|..+++.+ +..+.+|++ .+++.++..+.. .+..+|..+++.+..+++..
T Consensus 222 l~~~~~~~~~~vr~~~~~~l~~l~~~~------~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~a~~~l~~~~~~~~~ 292 (462)
T 1ibr_B 222 VCEATQCPDTRVRVAALQNLVKIMSLY------YQYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMD 292 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHC------GGGCTTTTTTTHHHHHHHHHHC---SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHH
Confidence 6666777 8999999999999999987 667778888 899988887763 34567999999999888652
Q ss_pred -----------------C-CcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccch
Q 002877 539 -----------------N-ITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATK 600 (872)
Q Consensus 539 -----------------~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 600 (872)
. ...+.+++..++|.++..+.+. ..++.+....+|..++.++..++..+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~------d~d~~~~~~~~r~~a~~~L~~l~~~~~~----- 361 (462)
T 1ibr_B 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ------DENDDDDDWNPCKAAGVCLMLLATCCED----- 361 (462)
T ss_dssp HHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC------CSSCCTTCCSHHHHHHHHHHHHHHHTTT-----
T ss_pred HHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc------ccccccccchHHHHHHHHHHHHHHhccH-----
Confidence 1 0123456677777776655421 0111112235778889999999998886
Q ss_pred hhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh-hHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHH
Q 002877 601 SFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG-PEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVC 679 (872)
Q Consensus 601 ~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 679 (872)
. .++.+++.+...+.+.++.+|+.++.+++.++.... ..+.++++.++|.+...+.+. ++.+|..|+++++.++
T Consensus 362 -~---~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 362 -D---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRIC 436 (462)
T ss_dssp -T---HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHH
T ss_pred -H---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 2 345678888888888999999999999999987665 456788999999999999875 4779999999999999
Q ss_pred HHhcCCc--cccHHHHHHHHHHHhc
Q 002877 680 RALDDKV--LPFCDGIMSLLLNALS 702 (872)
Q Consensus 680 ~~~~~~~--~~~~~~i~~~l~~~l~ 702 (872)
...+..+ .+|++.+++.+++.|+
T Consensus 437 ~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 437 ELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HhcccccccHHHHHHHHHHHHHHhc
Confidence 9998765 5899999998887664
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.83 E-value=3.8e-16 Score=175.00 Aligned_cols=647 Identities=10% Similarity=0.057 Sum_probs=403.3
Q ss_pred cHHHHHHHHHHHHHhhhccCc-cccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhH--HHHH
Q 002877 146 LAALKQATLETLGYVCEEISH-QDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEME--RNYI 222 (872)
Q Consensus 146 ~~~~r~~al~~l~~l~~~~~~-~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~~l 222 (872)
+.+.|+.|+.=|-.++++-.+ +.+ +-..-+..+.+.+.. +.++++..+++++|..+.. .+-..... ...=
T Consensus 21 ~~~~~~~a~~nl~vl~re~aga~~i---~~~~~~~~~~~l~~~-~~~~~~~~~~~r~~~~~~~---~~~~r~~~~~~~~~ 93 (810)
T 3now_A 21 PIDKRRAAANNLVVLAKEQTGAELL---YKDHCIAKVASLTKV-EKDQDIYVNMVHLVAALCE---NSVERTKGVLTELG 93 (810)
T ss_dssp SSHHHHHHHHHHHHHSSCHHHHHHH---HHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHSC
T ss_pred CHHHHHHHHhhceeeeccccchHHH---HhCchHHHHHHHHhc-cCchhHHHHHHHHHHHHHh---ccHHHHHHHHHHcC
Confidence 567788888888788876321 211 122234455555553 2578999999999998753 22111000 0111
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh------------hhH---HhHHHHHHHHHHHhcCC--ChHHHHHHHHh
Q 002877 223 MKVVCETAKSKEVEIRQAAFECLVSIASTYYE------------VLE---PYMQTLFELTSNAVKGD--EEAVALQAVEF 285 (872)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~------------~~~---~~l~~l~~~~~~~~~~~--~~~~~~~al~~ 285 (872)
.+.+.+.+.++++++..+++.++..+.+.... ... ..+..++..++..+.+. ....|..+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~ 173 (810)
T 3now_A 94 VPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIEL 173 (810)
T ss_dssp HHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHH
Confidence 33466677778899999999999998876531 111 23445666666666663 45577788876
Q ss_pred HhHHhHhhhhhhhhcCCCCCCCCCCchHHHH-HhHHhhHHHHHHHHhcccCC--cccCCCCcchhhhHHHHHHHHHhhcC
Q 002877 286 WSSICDEEIELQEFENPETGDSDSPNYHFIE-KARSSLVPMLLETLLKQEED--QDQDDSIWNISMAGGTCLGLVARTVG 362 (872)
Q Consensus 286 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~l~~~~~d--~~~d~~~~~~r~~a~~~l~~l~~~~~ 362 (872)
+..-+..... +....|.. .-+..++ ......++- +..-.-..+.|..+.-++.++.+...
T Consensus 174 ~~~~~~~~~~-------------~~~~~~~~~~g~~~~l----~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~ 236 (810)
T 3now_A 174 ITRNVHYTAL-------------EWAERLVEIRGLCRLL----DVCSELEDYKYESAMDITGSSSTIASVCLARIYENMY 236 (810)
T ss_dssp HHHHTTCTTT-------------THHHHHHHTTHHHHHH----HHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCcccc-------------ccccchhhHhhHHHHH----HHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhc
Confidence 6555432110 00001111 1122222 222222221 11111234789999999999988876
Q ss_pred -----CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhH-H-hHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002877 363 -----DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLV-H-AGFDFLLNAMRDENNHVKDTTAWTLS 435 (872)
Q Consensus 363 -----~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~-~l~~~l~~~l~d~~~~vr~~a~~~l~ 435 (872)
+.+...+-.++...+..++...+--|..++..+..+.. +.-...+ . ..++.++..+.++++.++..|.|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~-~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~ 315 (810)
T 3now_A 237 YDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPL-DVGNQVVAREGILQMILAMATTDDELQQRVACECLI 315 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSH-HHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCH-HHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44555667778888877777777778899999988863 4333323 2 78899999999999999999999999
Q ss_pred HHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHHHhh
Q 002877 436 RIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLS-PYLTSIIAELLRAA 513 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~~~~il~~l~~~l 513 (872)
..+..-.. -......-++.|...+.+ ++.+|..|..+|.++...... .+....+. .-+..+++.+.+.+
T Consensus 316 ~aa~~~~~--------R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~-d~~~~~~~~g~i~~Lv~~l~~lL 386 (810)
T 3now_A 316 AASSKKDK--------AKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ-DAAIRPFGDGAALKLAEACRRFL 386 (810)
T ss_dssp HHTTSHHH--------HHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT-TTSCCSSTTTHHHHHHHHHHHHH
T ss_pred HHcCCcHH--------HHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-CccccchhhccHHHHHHHHHHHh
Confidence 97654211 111222234777777776 888999888888888643210 01012222 23678888888888
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHH--HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHH
Q 002877 514 DRTDVGGSKLRSAAYETLNEVVRCSNITETSQII--AELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQ 591 (872)
Q Consensus 514 ~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 591 (872)
.+.. .+..++..+.++|..+..... ...... ..++|.+++.+... ...++..+..+|.++..
T Consensus 387 ~~~~-~d~~v~~~AveaLayLS~~~~--vk~~lv~d~g~Ip~LV~LL~s~-------------d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 387 IKPG-KDKDIRRWAADGLAYLTLDAE--CKEKLIEDKASIHALMDLARGG-------------NQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HCSS-CCSSHHHHHHHHHHHHTTSHH--HHHHHHHCHHHHHHHHHHHHTT-------------CGGGHHHHHHHHHHHTT
T ss_pred cCCC-CCHHHHHHHHHHHHHHhCCcH--HHHHHHHccchHHHHHHHhCCC-------------ChHHHHHHHHHHHHHcC
Confidence 7541 134569999999999976533 122222 35788888877631 12355677888988877
Q ss_pred HcCCCc-------------------cchh---hch----hhHH-HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHH
Q 002877 592 KFSSTD-------------------ATKS---FIL----QTAD-QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEF 644 (872)
Q Consensus 592 ~~~~~~-------------------~~~~---~~~----~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~ 644 (872)
.....+ .+.+ ... ..+. ..++.|+.++.++++.+++.|..++++++.. .+ .
T Consensus 451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~-~ 528 (810)
T 3now_A 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KE-L 528 (810)
T ss_dssp CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HH-H
T ss_pred CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH-H
Confidence 432100 0000 000 1111 4788999999999999999999999999753 22 2
Q ss_pred Hhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCC--ccc-cHHHHHHHHHHHhcCCCCCCCCchhHHHHHH
Q 002877 645 AKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDK--VLP-FCDGIMSLLLNALSNSQLNRSVKPPILSCFG 719 (872)
Q Consensus 645 ~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~--~~~-~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~ 719 (872)
...+ ...+|.|...+.+. +...+..|+++|+.++...... +.. .....++.|+.+|.++. ....+..++.+++
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~~~eAl~AL~ 606 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC-TALENFESLMALT 606 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC-cHHHHHHHHHHHH
Confidence 2222 25788888888765 4568999999999998765322 111 12457899999887431 2223457889999
Q ss_pred HHHHhhccchhhhHH-HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhH--HHHHH
Q 002877 720 DIALAIGVHFEKYVP-HALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYA--QHLLQ 796 (872)
Q Consensus 720 ~l~~~~~~~~~~~l~-~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~il~ 796 (872)
+|+....+.-...+. ..+|.+...+.+. ...++..++.++..+..+-.. ...++ ...++
T Consensus 607 NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-------------~~~Vq~~A~~~L~NLa~~~~~-----~~~~v~~~g~l~ 668 (810)
T 3now_A 607 NLASMNESVRQRIIKEQGVSKIEYYLMED-------------HLYLTRAAAQCLCNLVMSEDV-----IKMFEGNNDRVK 668 (810)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSC-------------CTTHHHHHHHHHHHHTTSHHH-----HHHHHSSSSHHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHHhCChHH-----HHHHHhccCcHH
Confidence 988653221111121 3455555554431 125778888888888764321 12222 23667
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccC-chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 002877 797 FIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKD-SSFCNDFMSECLRSDDEQLKETAGWTQGMINR 868 (872)
Q Consensus 797 ~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 868 (872)
.|..++.. .+.++++.|+.+|+.++...... ...... .++++.|+.. +.++++++|..|+|+++.+..
T Consensus 669 ~Lv~LL~s--~d~~vq~~Aa~ALanLt~~s~~~-~~~ii~~~g~I~~Lv~L-L~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 669 FLALLCED--EDEETATACAGALAIITSVSVKC-CEKILAIASWLDILHTL-IANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHGGGC--SSHHHHHHHHHHHHHHHHHCHHH-HHHHHTSTTHHHHHHHH-HTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC--CCHHHHHHHHHHHHHHhCCCHHH-HHHHHHHcCCHHHHHHH-HCCCCHHHHHHHHHHHHHHHh
Confidence 77777654 57899999999999998743222 222344 6789999885 889999999999999988763
No 25
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.83 E-value=2.6e-16 Score=176.28 Aligned_cols=663 Identities=11% Similarity=0.059 Sum_probs=412.4
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccch
Q 002877 5 ITQFLLAAQ--SADANIRNEAEANLRQLQQQN-------LPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTK 75 (872)
Q Consensus 5 ~~~~l~~~~--s~~~~~r~~A~~~L~~~~~~~-------~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~ 75 (872)
+.+.++-+. +.+.+.|.+|-..|.-+...+ ..+.+..+..++.+ ..++++...|..+|.......- .+-
T Consensus 8 v~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~r~~~~~~~~~~-~r~ 85 (810)
T 3now_A 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV-EKDQDIYVNMVHLVAALCENSV-ERT 85 (810)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhc-cCchhHHHHHHHHHHHHHhccH-HHH
Confidence 444555554 557889999988886443321 02334566667765 3578888888888877765321 000
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhc---------CC--------CCchHHHHHHHH
Q 002877 76 EDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEI---------PQ--------KQWPELIRSLLN 138 (872)
Q Consensus 76 ~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~---------p~--------~~~~~ll~~l~~ 138 (872)
...|..+.. +.+.+.+..+++.+...++.++..+..... |+ .....++..|+.
T Consensus 86 ---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (810)
T 3now_A 86 ---KGVLTELGV-------PWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVY 155 (810)
T ss_dssp ---HHHHHHSCH-------HHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred ---HHHHHHcCH-------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHH
Confidence 112333332 246677778888888888988888875432 11 012457788888
Q ss_pred hhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccC-CC--------CCHHHHHHHHHHHHHHHHHH
Q 002877 139 NMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNL-AE--------HSAEVRLAATRALYNALDFA 209 (872)
Q Consensus 139 ~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~-~~--------~~~~vr~~al~~l~~~~~~~ 209 (872)
.+.+...+...|..++..+.+-+-+-..+..+.-....-+..++..... .+ ...+.|..+.-|+..+.+-+
T Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~ 235 (810)
T 3now_A 156 SITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENM 235 (810)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTC
T ss_pred HhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHh
Confidence 8888765678899999999876644321111000011112222222111 11 24688988888888876543
Q ss_pred HhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH--HHHHHHHHHhcCCChHHHHHHHHhHh
Q 002877 210 LTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ--TLFELTSNAVKGDEEAVALQAVEFWS 287 (872)
Q Consensus 210 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~~~~~al~~l~ 287 (872)
..+-..+.+...+-+.+...+..++.+.+..++..+..++...++.-...+. ..++.++....++++.++..|...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~ 315 (810)
T 3now_A 236 YYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLI 315 (810)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3211123333444555555666677777888888888887765554333321 46777777778889999999999888
Q ss_pred HHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC-C---
Q 002877 288 SICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG-D--- 363 (872)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~-~--- 363 (872)
..+..... ..++... .+ |.+...+... + ..+|..|..+|..++...+ +
T Consensus 316 ~aa~~~~~----------------R~~I~~~--gv-~~L~~Ll~s~--~-------~~vr~~Al~~L~kl~s~~~~d~~~ 367 (810)
T 3now_A 316 AASSKKDK----------------AKALCEQ--GV-DILKRLYHSK--N-------DGIRVRALVGLCKLGSYGGQDAAI 367 (810)
T ss_dssp HHTTSHHH----------------HHTTHHH--HH-HHHHHHTTCS--C-------HHHHHHHHHHHHHHHTTTTTTTSC
T ss_pred HHcCCcHH----------------HHHHHHc--Cc-HHHHHHHcCC--C-------HHHHHHHHHHHHHhccccccCccc
Confidence 88765321 1122211 22 6666665421 1 3567778888888875322 1
Q ss_pred c-----chhchHHHHHhhccCC--CcchHHHHHHHHHHhhcCCCccchhHhH--HhHHHHHHHhcCCCcHHHHHHHHHHH
Q 002877 364 E-----VVPLVMPFVEANIVKS--DWRCREAATYAFGSVLEGPTIDKLAPLV--HAGFDFLLNAMRDENNHVKDTTAWTL 434 (872)
Q Consensus 364 ~-----~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l 434 (872)
. .++.+.+.+...+.++ +...|+.++.+|+.++.... .-.... ...+|.+++.++++++.+++.+.++|
T Consensus 368 ~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~--vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L 445 (810)
T 3now_A 368 RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE--CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445 (810)
T ss_dssp CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH--HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH--HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHH
Confidence 1 1345677788888877 78999999999999987532 112222 37899999999999999999999999
Q ss_pred HHHHhhccCCC--------CCc---------cccCcccHH---------HHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 435 SRIFELLHCPA--------TGF---------SVISPENLQ---------RILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 435 ~~l~~~~~~~~--------~~~---------~~~~~~~~~---------~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
++++....... ..+ +....+... ..++.|...+.+ ++.+++.|+++|.+++..
T Consensus 446 ~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d 525 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525 (810)
T ss_dssp HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 99987432100 000 000001111 367888888887 999999999999999854
Q ss_pred hccCCCCCCCchhh-HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccH---HHHHHHHHHHHHHHHHHHh
Q 002877 488 YEDAGPSSSLLSPY-LTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETS---QIIAELLPAIMGRLGQTLE 563 (872)
Q Consensus 488 ~~~~~~~~~~l~~~-~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~ 563 (872)
. +..... -...+|.|+..+.+. ....+..|.++|..+..... .... ......+|++++.+...
T Consensus 526 ~-------~~r~~Vv~~Gaip~Lv~LL~s~---~~~~k~~Aa~AL~nL~~~~~-p~~~~~~~~~~~aIppLv~LL~~~-- 592 (810)
T 3now_A 526 K-------ELRGKVVQEGGVKALLRMALEG---TEKGKRHATQALARIGITIN-PEVSFSGQRSLDVIRPLLNLLQQD-- 592 (810)
T ss_dssp H-------HHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHSC-HHHHTTTHHHHHTHHHHHHTTSTT--
T ss_pred H-------HHHHHHHHCCCHHHHHHHHccC---CHHHHHHHHHHHHHHhcCCC-hhhhhcchhhhcHHHHHHHHhCCC--
Confidence 2 111111 125678888888743 34568999999999987543 2110 11234677777655421
Q ss_pred hhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH-HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh
Q 002877 564 LQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA-DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP 642 (872)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 642 (872)
.....+..++.+|.+++..-.. .-.... ...++.|..++.+.+..+++.|+.++++++..- +
T Consensus 593 ----------~~~l~~~eAl~AL~NLa~~~d~------~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~ 655 (810)
T 3now_A 593 ----------CTALENFESLMALTNLASMNES------VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-D 655 (810)
T ss_dssp ----------SCHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-H
T ss_pred ----------CcHHHHHHHHHHHHHHhcCCHH------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-H
Confidence 0011224567788777532111 111111 145778888888888999999999999997633 2
Q ss_pred HHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccH--HHHHHHHHHHhcCCCCCCCCchhHHHHH
Q 002877 643 EFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFC--DGIMSLLLNALSNSQLNRSVKPPILSCF 718 (872)
Q Consensus 643 ~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~~l 718 (872)
....+. ...++.|...+... +..++..|+++|+.++..........+ ...++.|+.+|.++ +..++..++.++
T Consensus 656 ~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~--d~~vq~~A~~aL 732 (810)
T 3now_A 656 VIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP--SPAVQHRGIVII 732 (810)
T ss_dssp HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS--SHHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 333344 25788888888764 567999999999999874332222222 35788999999987 889999999999
Q ss_pred HHHHHhhccchhhhHH--HHHHHHHHH
Q 002877 719 GDIALAIGVHFEKYVP--HALQMMQEA 743 (872)
Q Consensus 719 ~~l~~~~~~~~~~~l~--~i~~~l~~~ 743 (872)
++++...+ ....++- .+++.|...
T Consensus 733 ~NL~~~s~-e~~~~l~e~G~i~~L~~L 758 (810)
T 3now_A 733 LNMINAGE-EIAKKLFETDIMELLSGL 758 (810)
T ss_dssp HHHHTTCH-HHHHHHHTSTHHHHHTTS
T ss_pred HHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 99987432 2233321 444555444
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.79 E-value=2.9e-16 Score=176.36 Aligned_cols=440 Identities=13% Similarity=0.102 Sum_probs=301.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHH--hcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhh
Q 002877 4 EITQFLLAAQSADANIRNEAEANLRQLQ--QQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQ 81 (872)
Q Consensus 4 ~~~~~l~~~~s~~~~~r~~A~~~L~~~~--~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~ 81 (872)
++.++-+.+.++|...|+.|-..+--+. ..+.+.+...++.++.+ .+..+|+++...+.+....
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~------------ 79 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT--DNLELKKLVYLYLMNYAKS------------ 79 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSS--SCHHHHHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccc------------
Confidence 5667777778899988888877777544 33445666677776654 5799999999988775421
Q ss_pred hhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhh
Q 002877 82 WLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVC 161 (872)
Q Consensus 82 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 161 (872)
.++....+.+.+.+.|.++++.+|..+..+++.+. .| ..++.+++.+.+.+.++ ++.+|..|+.++..++
T Consensus 80 ----~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~-~~~~~l~~~l~~~L~d~--~~~VRk~A~~al~~i~ 149 (591)
T 2vgl_B 80 ----QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD-KITEYLCEPLRKCLKDE--DPYVRKTAAVCVAKLH 149 (591)
T ss_dssp ----SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG-GGHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHH
Confidence 24444445667778899999999998887777764 33 37888999999999998 9999999999999999
Q ss_pred hccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHhhcCCcHHHHH
Q 002877 162 EEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTN--FQNEMERNYIMKVVCETAKSKEVEIRQ 239 (872)
Q Consensus 162 ~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~ 239 (872)
... ++.+ .. ..+++.+...+.| +++.|+..|+.+|+.+...-... +.. ....+..+...+.+.++-.+.
T Consensus 150 ~~~-p~~~-~~--~~~~~~l~~lL~d--~d~~V~~~A~~aL~~i~~~~~~~~~~~l---~~~~~~~Ll~~l~~~~~~~q~ 220 (591)
T 2vgl_B 150 DIN-AQMV-ED--QGFLDSLRDLIAD--SNPMVVANAVAALSEISESHPNSNLLDL---NPQNINKLLTALNECTEWGQI 220 (591)
T ss_dssp HSS-CCCH-HH--HHHHHHHHHTTSC--SCHHHHHHHHHHHHHHTTSCCSCCSCCC---HHHHHHHHHHHHHHCCHHHHH
T ss_pred hhC-hhhc-cc--ccHHHHHHHHhCC--CChhHHHHHHHHHHHHHhhCCCccchhc---cHHHHHHHHHcCCCCCchHHH
Confidence 865 5544 22 4688999999987 78999999999999864321110 110 011233344444455666666
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH
Q 002877 240 AAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKAR 319 (872)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (872)
.+++++..+.... ......+++.+...+++.++.++..|+.++..+..... ..+...+..+
T Consensus 221 ~il~~l~~l~~~~----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~---------------~~~~~~~~~~ 281 (591)
T 2vgl_B 221 FILDCLSNYNPKD----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP---------------KDSDYYNMLL 281 (591)
T ss_dssp HHHHHHHTSCCCS----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC---------------BTTBSHHHHH
T ss_pred HHHHHHHHhCCCC----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC---------------CCHHHHHHHH
Confidence 6666665443211 23345677777777788889999999988887754200 0011234444
Q ss_pred HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCC
Q 002877 320 SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGP 399 (872)
Q Consensus 320 ~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 399 (872)
..+.+.++..+ . .| .++|..+...+..+....|+.+.+.+..++ +..++++.+|..++..+..++...
T Consensus 282 ~~~~~~L~~L~-~--~d-------~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 282 KKLAPPLVTLL-S--GE-------PEVQYVALRNINLIVQKRPEILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp HHTHHHHHHHT-T--SC-------HHHHHHHHHHHHHHHHHCCSTTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHh-c--CC-------ccHHHHHHHHHHHHHHhChHHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCChh
Confidence 56666666443 2 11 579999999999999887766655544332 222444889999999998887542
Q ss_pred CccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHH
Q 002877 400 TIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVC 478 (872)
Q Consensus 400 ~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~ 478 (872)
.+..+++.+...+.+.++.+|..+++++++++...+ +.....++.++..+.+ ...++..+.
T Consensus 350 -------nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-----------~~~~~~v~~Ll~ll~~~~~~v~~e~i 411 (591)
T 2vgl_B 350 -------NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-----------QSAERCVSTLLDLIQTKVNYVVQEAI 411 (591)
T ss_dssp -------THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh-----------hHHHHHHHHHHHHHcccchHHHHHHH
Confidence 245678888889999999999999999999997554 3457788888888888 788888888
Q ss_pred HHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhc
Q 002877 479 GAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRC 537 (872)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~ 537 (872)
.++..++... ++.. ..+++.+...+.. .....++..+.++++.....
T Consensus 412 ~~l~~ii~~~------p~~~----~~~v~~L~~~l~~--~~~~~~~~~~~wilGey~~~ 458 (591)
T 2vgl_B 412 VVIRDIFRKY------PNKY----ESIIATLCENLDS--LDEPDARAAMIWIVGEYAER 458 (591)
T ss_dssp HHHHHHHHHS------CSSC----CTTHHHHHHTTTT--CCSHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHC------cchH----HHHHHHHHHHHHh--ccCHHHHHHHHHHHHccccc
Confidence 8888888765 3322 2234445555542 22344566666666655433
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.78 E-value=5.2e-14 Score=169.82 Aligned_cols=658 Identities=13% Similarity=0.076 Sum_probs=386.8
Q ss_pred CHHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhccc------CCccc--chHHHHhhhh
Q 002877 16 DANIRNEAEANLRQLQQQ----NLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLD------AKDAT--TKEDLAKQWL 83 (872)
Q Consensus 16 ~~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~------~~~~~--~~~~~~~~w~ 83 (872)
++.+|++.-+.+..+... ++|+++..+++.+. .++..+..+..+|+.... ..+.. +..... .
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~---~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk---~ 186 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS---SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK---N 186 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH---H
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc---cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH---H
Confidence 467888888888886655 46778888888774 245556666666654321 00000 000000 0
Q ss_pred cCChHHHHHHHHHHHHhhcC-CChhHhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHhhccCCccHHHHHHHHHHHHHh
Q 002877 84 AIDISYKSQVKDLLLRTLAS-PVPEARHTSAQVIAKIASIEIPQK--QWPELIRSLLNNMTQQDSLAALKQATLETLGYV 160 (872)
Q Consensus 84 ~l~~~~~~~i~~~Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~--~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 160 (872)
.+. +....|.+.+.+.+.+ ++..++..+-.++...... .|.+ ..+.+++.+.+.+.+ ++..|..++.||..+
T Consensus 187 ~l~-~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~w-i~~~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i 261 (1049)
T 3m1i_C 187 SMS-KEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHW-IPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEV 261 (1049)
T ss_dssp HHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT-SCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh-CCHHHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHH
Confidence 011 1123333344445543 4567888887777765431 1100 013355655543332 578899999999998
Q ss_pred hhccCccc---cchhhHHHHHHHHHhcc---------------c-CCCCCHHHHHHHHHHHHHHHHHHHhhhhh----hh
Q 002877 161 CEEISHQD---LVQDEVNAVLTAVVQGM---------------N-LAEHSAEVRLAATRALYNALDFALTNFQN----EM 217 (872)
Q Consensus 161 ~~~~~~~~---l~~~~~~~l~~~l~~~l---------------~-~~~~~~~vr~~al~~l~~~~~~~~~~~~~----~~ 217 (872)
+..-.++. + ...+..+++.++..+ . ..+.+.++.....+.+..++.....-+.. ..
T Consensus 262 ~~~~~~~~~~~~-~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (1049)
T 3m1i_C 262 SNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE 340 (1049)
T ss_dssp HHCCCCTTCHHH-HHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred HhCCCCcchhhH-HHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH
Confidence 87621221 2 122223333333211 0 11124455556666665554322211111 11
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh------hhhhhHHhHHHHHHHHHHHhcCCCh---------------
Q 002877 218 ERNYIMKVVCETAKSKEVEIRQAAFECLVSIAST------YYEVLEPYMQTLFELTSNAVKGDEE--------------- 276 (872)
Q Consensus 218 ~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~~l~~l~~~~~~~~~~~~~--------------- 276 (872)
....+++.+..+...++.++...+++.|..+.+. ....+.+++..+++.++..+..+++
T Consensus 341 ~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~ 420 (1049)
T 3m1i_C 341 LLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREF 420 (1049)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECS
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhh
Confidence 1123566666766777899999999999999873 2345678888888877765532110
Q ss_pred -------HHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhh
Q 002877 277 -------AVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMA 349 (872)
Q Consensus 277 -------~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~ 349 (872)
+.+..+-+++..++... ....++.+.+.+-..+... +..|..+.+
T Consensus 421 ~~d~d~~~~~~~~~~~L~~l~~~~---------------------~~~~l~~v~~~l~~~l~~~-------~~~W~~~ea 472 (1049)
T 3m1i_C 421 VKESDTIQLYKSEREVLVYLTHLN---------------------VIDTEEIMISKLARQIDGS-------EWSWHNINT 472 (1049)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHC---------------------HHHHHHHHHHHHHHHHTSS-------SCCHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHccC---------------------HHHHHHHHHHHHHHHhCCC-------CCCHHHHHH
Confidence 12333444454444321 1223333444443333211 123999999
Q ss_pred HHHHHHHHHhhcCC----cchhchHHHHHhhcc-----CCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC
Q 002877 350 GGTCLGLVARTVGD----EVVPLVMPFVEANIV-----KSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR 420 (872)
Q Consensus 350 a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~ 420 (872)
+..+++.++...+. .+++.+++.+..... ++++.+|..++.++|.+++... . -..+++.+++.++..+.
T Consensus 473 al~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~-~-~~~~l~~vl~~ll~~l~ 550 (1049)
T 3m1i_C 473 LSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK-A-HWNFLRTVILKLFEFMH 550 (1049)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH-H-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHhc
Confidence 99999988776543 235666666654322 1345555568888998876542 2 24678899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhhccCCCC-CccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 002877 421 DENNHVKDTTAWTLSRIFELLHCPAT-GFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLL 498 (872)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (872)
|++++|+..|++++.++++.+..... ..+....+|++.++..+...+.+ ...-......+++.++.... ..+..
T Consensus 551 ~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~----~~~~~ 626 (1049)
T 3m1i_C 551 ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER----SVAER 626 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC----SHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC----CHHHH
Confidence 99999999999999999987653100 00112247899999988888876 55556677888888887651 01345
Q ss_pred hhhHHHHHHHHHHhhcc--------CCC-cch---hHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHH---h
Q 002877 499 SPYLTSIIAELLRAADR--------TDV-GGS---KLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTL---E 563 (872)
Q Consensus 499 ~~~~~~il~~l~~~l~~--------~~~-~~~---~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~---~ 563 (872)
.+++..+++.+...+.. .+. .+. ......++++..+++..+ ..+.+++..+++.++..+.... +
T Consensus 627 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~-~~f~p~~~~i~~~~l~~~~~~~~~~~ 705 (1049)
T 3m1i_C 627 NRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRAVSSMIS 705 (1049)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788777766544321 010 011 111345677888888888 8888988888877765544321 1
Q ss_pred hhhc--Ccc-hhhhHHH----HHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHH-HHHHHHHHH
Q 002877 564 LQIV--SSD-DREKQGD----LQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVH-EEAMLAIGA 635 (872)
Q Consensus 564 ~~~~--~~~-~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~-~~a~~~l~~ 635 (872)
.... +.. ....... +...+...+..+...... ......|+++++++.++..+.......| ..++.+++.
T Consensus 706 ~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~---l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ 782 (1049)
T 3m1i_C 706 AQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARN---LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTT 782 (1049)
T ss_dssp HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSC---HHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHH
T ss_pred HHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHH
Confidence 1100 000 0011111 222223334443333211 0113457778888877777654322211 357888999
Q ss_pred HHHHhhhHHHhhhHHHHHHHHhhh-----c-ccchHhHHHHHHHHHHHHHHHhcCCccc---c-HHHHHHHHHHHhcCCC
Q 002877 636 LAYATGPEFAKYMPEFYQYLQMGL-----Q-NSEEYQVCAITVGVVGDVCRALDDKVLP---F-CDGIMSLLLNALSNSQ 705 (872)
Q Consensus 636 l~~~~~~~~~~~l~~i~~~l~~~l-----~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~---~-~~~i~~~l~~~l~~~~ 705 (872)
++...+..+.+|++.+++.+.... . -.+.++++...+.+++.+.+.....+.+ . +..+++..+..+..+
T Consensus 783 ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~- 861 (1049)
T 3m1i_C 783 VVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN- 861 (1049)
T ss_dssp HHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCC-
Confidence 999999888999999988887664 2 1346889999999999999987755432 2 456777777788777
Q ss_pred CCCCCchhHHHHHHHHHHhh
Q 002877 706 LNRSVKPPILSCFGDIALAI 725 (872)
Q Consensus 706 ~~~~~~~~~~~~l~~l~~~~ 725 (872)
++.+...++.++..+....
T Consensus 862 -~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 862 -NRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp -SHHHHHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHH
Confidence 7888889999998887754
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.78 E-value=5.3e-16 Score=174.29 Aligned_cols=439 Identities=13% Similarity=0.124 Sum_probs=309.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCChhHHHHHHHHHhhcccCCcccchHHHHhhh
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVN--NEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQW 82 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w 82 (872)
+.++++.+.|+|.++|+.+..++..+.+.+ ++....+...+.+ .+.++.+|..|...+.+..
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--------------- 114 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--------------- 114 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---------------
Confidence 566777788999999999999999987754 4544444444432 2457999999988876543
Q ss_pred hcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCch--HHHHHHHHhhccCCccHHHHHHHHHHHHHh
Q 002877 83 LAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWP--ELIRSLLNNMTQQDSLAALKQATLETLGYV 160 (872)
Q Consensus 83 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~--~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 160 (872)
+++..+.+...+.+.+.++++.||+.|+.++..++... |+ .++ ++++.+.+.+.++ ++.++..|+.+|+.+
T Consensus 115 ---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~-~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 115 ---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQ-MVEDQGFLDSLRDLIADS--NPMVVANAVAALSEI 187 (591)
T ss_dssp ---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CC-CHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hh-hcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHH
Confidence 35556667778889999999999999999999999865 64 666 5899999999988 899999999999999
Q ss_pred hhccCccc-cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHH
Q 002877 161 CEEISHQD-LVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQ 239 (872)
Q Consensus 161 ~~~~~~~~-l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 239 (872)
+... ++. . ....+..++.+++.+.+ .++-.+...++++..+.. .+ ......+++.+...+++.++.++.
T Consensus 188 ~~~~-~~~~~-~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~---~~---~~~~~~~l~~l~~~l~~~~~~V~~ 257 (591)
T 2vgl_B 188 SESH-PNSNL-LDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNP---KD---DREAQSICERVTPRLSHANSAVVL 257 (591)
T ss_dssp TTSC-CSCCS-CCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCC---CS---HHHHHHHHHHHTTCSCSSTTHHHH
T ss_pred HhhC-CCccc-hhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCC---CC---hHHHHHHHHHHHHHHcCCChHHHH
Confidence 9875 322 1 22334455555555655 466777777777765321 11 111234777888888889999999
Q ss_pred HHHHHHHHHHHh---hhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHH
Q 002877 240 AAFECLVSIAST---YYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIE 316 (872)
Q Consensus 240 ~~~~~l~~l~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (872)
.++.++..+... .++.+......+.+.++.. .+.+++++..|+..+..++...+. .+.
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p~------------------~~~ 318 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPE------------------ILK 318 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCCS------------------TTT
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhChH------------------HHH
Confidence 999999987642 2344444444555544433 347889999999998888775321 111
Q ss_pred HhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhh
Q 002877 317 KARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVL 396 (872)
Q Consensus 317 ~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~ 396 (872)
+.+..+ +.. . +|+ +++|..+.+.+..++ .+.-...+++.+..++.+.++..|..++.+++.++
T Consensus 319 ~~~~~~-------~~~-~----~d~--~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la 381 (591)
T 2vgl_B 319 QEIKVF-------FVK-Y----NDP--IYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCA 381 (591)
T ss_dssp TCTTTT-------SCC-T----TSC--HHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhh-------eec-c----CCh--HHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 111111 011 0 112 788887766665543 44456778888888888889999999999999999
Q ss_pred cCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHH
Q 002877 397 EGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVA 474 (872)
Q Consensus 397 ~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~ 474 (872)
... .+....+++.+++.+.+....++..+..++..+....++ ....+++.|...+.+ .+.++
T Consensus 382 ~~~-----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-----------~~~~~v~~L~~~l~~~~~~~~~ 445 (591)
T 2vgl_B 382 IKV-----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-----------KYESIIATLCENLDSLDEPDAR 445 (591)
T ss_dssp TTC-----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-----------SCCTTHHHHHHTTTTCCSHHHH
T ss_pred HhC-----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-----------hHHHHHHHHHHHHHhccCHHHH
Confidence 764 234567888899999999999999998899888876654 123455666777765 78899
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCccc
Q 002877 475 EKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITET 543 (872)
Q Consensus 475 ~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~ 543 (872)
..++|+++.++... ++ .+.++..+++.+. .++..+|..++.++..+....+ ...
T Consensus 446 ~~~~wilGey~~~~------~~-----~~~~l~~l~~~~~---~~~~~vr~~~l~a~~Kl~~~~p-~~~ 499 (591)
T 2vgl_B 446 AAMIWIVGEYAERI------DN-----ADELLESFLEGFH---DESTQVQLTLLTAIVKLFLKKP-SET 499 (591)
T ss_dssp HHHHHHHHTTCTTC------TT-----HHHHHHHHSTTCS---SSCHHHHHHHHHHHHHHHTTCC-STT
T ss_pred HHHHHHHHcccccc------cC-----HHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHhcCc-hHH
Confidence 99999998876554 11 3455565555443 3456789999999999998877 543
No 29
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.76 E-value=3.1e-13 Score=158.72 Aligned_cols=662 Identities=12% Similarity=0.057 Sum_probs=390.5
Q ss_pred CHHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhcCCCChhHHHHHHHHHh----hcccCCc-ccch--HHHHhhhhc
Q 002877 16 DANIRNEAEANLRQLQQQ----NLPGFLLSLSVELVNNEKPTESRRLAGIMLK----NSLDAKD-ATTK--EDLAKQWLA 84 (872)
Q Consensus 16 ~~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~----~~i~~~~-~~~~--~~~~~~w~~ 84 (872)
.+-+|++..+.|..+..+ ++|+++..+++.+.+++ ....-.....+|. ....... .... .........
T Consensus 103 ~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~ 181 (980)
T 3ibv_A 103 PAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASS-QSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDA 181 (980)
T ss_dssp CTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCC-hhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHH
Confidence 456999998888886654 56888889988887532 1111111222222 1111000 0000 000000111
Q ss_pred CChHHHHHHHHHHHHhh----cCCChhHhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHhhccCCccHHHHHHHHHHHH
Q 002877 85 IDISYKSQVKDLLLRTL----ASPVPEARHTSAQVIAKIASIEIPQK--QWPELIRSLLNNMTQQDSLAALKQATLETLG 158 (872)
Q Consensus 85 l~~~~~~~i~~~Ll~~l----~~~~~~vr~~~~~~l~~i~~~~~p~~--~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~ 158 (872)
+..+....|-+..++.| ...++.++..+-.+++....- .|-+ --.++++.+++.+.+ +..|..|+.||.
T Consensus 182 m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w-i~~~~i~~~~ll~~l~~~L~~----~~~r~~A~ecL~ 256 (980)
T 3ibv_A 182 IRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW-ININLIVNEPCMNLLYSFLQI----EELRCAACETMT 256 (980)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SCHHHHHCHHHHHHHHHHTTS----HHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh-cCHHhhhcchHHHHHHHHcCC----hHHHHHHHHHHH
Confidence 11111122223333333 235677777777776665531 0100 005788888888754 578999999999
Q ss_pred HhhhccCccccchhhHHHHH-----HHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH--hhhh----hh------hHHHH
Q 002877 159 YVCEEISHQDLVQDEVNAVL-----TAVVQGMNLAEHSAEVRLAATRALYNALDFAL--TNFQ----NE------MERNY 221 (872)
Q Consensus 159 ~l~~~~~~~~l~~~~~~~l~-----~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~--~~~~----~~------~~~~~ 221 (872)
.++.+-. + ......++ ..++..+...+.+.++.....+.+..+...+- .... .+ .....
T Consensus 257 ei~~k~~-~---~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ 332 (980)
T 3ibv_A 257 EIVNKKM-K---PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYN 332 (980)
T ss_dssp HHHHSCC-C---HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHH
T ss_pred HHHHcCC-C---hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHH
Confidence 9988742 1 11111111 12223333212566776665555544432211 1111 00 11123
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhh---------hhhhHHhHHHHHHHHHHHhcCC-----------Ch-----
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTY---------YEVLEPYMQTLFELTSNAVKGD-----------EE----- 276 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~l~~l~~~~~~~~~~~-----------~~----- 276 (872)
+++.+..++.+++.++...++..|..++... ...+.+++..+++.++..+.-+ ++
T Consensus 333 ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~ 412 (980)
T 3ibv_A 333 LFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQ 412 (980)
T ss_dssp THHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHH
Confidence 6778888888889999999999999888642 2345577778888777665421 11
Q ss_pred HHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHH
Q 002877 277 AVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGL 356 (872)
Q Consensus 277 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~ 356 (872)
+.|...-.+...+..... ..+....+..+.+.+.+.+... .. ..|..+.++.-++..
T Consensus 413 e~Rk~l~~l~d~~~~l~~-----------------~~~l~~~~~~i~~~l~~~l~~~----~~--~~W~~~EaaL~~l~~ 469 (980)
T 3ibv_A 413 EMRKKLKIFQDTINSIDS-----------------SLFSSYMYSAITSSLSTAATLS----PE--NSWQLIEFALYETYI 469 (980)
T ss_dssp HHHHHHHHHHHHHHHHCH-----------------HHHHHHHHHHHHHHHHHHTTSC----HH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCh-----------------HHHHHHHHHHHHHHHHHHhccc----CC--CCHHHHHHHHHHHHH
Confidence 123222211111111100 0111111113333333333210 01 239999999999999
Q ss_pred HHhhcCC---------cchhchHHHHHhhcc-----CCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHH--hcC
Q 002877 357 VARTVGD---------EVVPLVMPFVEANIV-----KSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLN--AMR 420 (872)
Q Consensus 357 l~~~~~~---------~~~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~--~l~ 420 (872)
+++..+. ...|.+++++...+. ++++.+|.+++.+++..++... . -..+++.+++.++. ++.
T Consensus 470 iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~-~-~~~~l~~~L~~ll~~~gl~ 547 (980)
T 3ibv_A 470 FGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD-Y-ESAAIPALIEYFVGPRGIH 547 (980)
T ss_dssp TTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG-T-CCTTHHHHHHHHTSTTTTT
T ss_pred HHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh-c-CchhHHHHHHHHhcccccc
Confidence 9988653 345667777776654 6789999999999999988763 2 23578899999999 999
Q ss_pred CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--C--------------------hHHHHHHH
Q 002877 421 DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--A--------------------PNVAEKVC 478 (872)
Q Consensus 421 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~--------------------~~v~~~a~ 478 (872)
+++++||.+|+.++.++++.+.. ...+|++.++..+-..+.- . ..-+....
T Consensus 548 ~~~~~V~~~a~~af~~f~~~~~~-------~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~ 620 (980)
T 3ibv_A 548 NTNERVRPRAWYLFYRFVKSIKK-------QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLF 620 (980)
T ss_dssp CCCTTTHHHHHHHHHHHHHHTTT-------TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHhhH-------HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHH
Confidence 99999999999999999999886 4567888888877666541 1 11345567
Q ss_pred HHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhc----cCCCc-ch-hHHHHHHHHHHHHHhcCCCcc------cHHH
Q 002877 479 GAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAAD----RTDVG-GS-KLRSAAYETLNEVVRCSNITE------TSQI 546 (872)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~----~~~~~-~~-~vr~~a~~al~~l~~~~~~~~------~~~~ 546 (872)
.+++.++..... +++....++..+++.+...+. ..... +. ...+..+.+++.+.+..+ .. +...
T Consensus 621 eaig~li~~~~~---~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~-~~~~~~~p~~~~ 696 (980)
T 3ibv_A 621 ETVGVLISSGNL---TPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFP-ARGSEEVAWLAS 696 (980)
T ss_dssp HHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSC-SCC-CCCSHHHH
T ss_pred HHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCC-cccCCCCcHHHH
Confidence 777777766420 022344566666666554433 22211 11 113366778888888664 21 4566
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHH
Q 002877 547 IAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVH 626 (872)
Q Consensus 547 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~ 626 (872)
+.+.++.++..+... .....++..++.++..++..+|. .+.|+++++++.++..++. .--
T Consensus 697 f~~~~~~il~~l~~~-----------~~~~~irea~~~~~~r~i~~lg~------~~~p~lp~~i~~ll~~~~~---~e~ 756 (980)
T 3ibv_A 697 FNKASDEIFLILDRM-----------GFNEDIRGAVRFTSGRIINVVGP------DMLPKVPQLISILLNSIDM---NEL 756 (980)
T ss_dssp HHHHHHHHHHHHHHS-----------CCSHHHHHHHHHHHHHHTTTTHH------HHTTTHHHHHHHHHHHCCT---TTH
T ss_pred HHHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHHHHHHHccH------hHHHHHHHHHHHHHhcCCH---HHH
Confidence 777777777766653 12356889999999999999999 8999999999999854432 223
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHh----hhccc--------chHhHHHHHHHHHHHHHHHh-cCCc-----cc
Q 002877 627 EEAMLAIGALAYATGPEFAKYMPEFYQYLQM----GLQNS--------EEYQVCAITVGVVGDVCRAL-DDKV-----LP 688 (872)
Q Consensus 627 ~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~----~l~~~--------~~~~v~~~a~~~l~~l~~~~-~~~~-----~~ 688 (872)
...+.+++.++..++..+.+.+..+++.+.. .+... +...++.+.+.++..+..+- +.-+ .+
T Consensus 757 ~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~ 836 (980)
T 3ibv_A 757 VDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQV 836 (980)
T ss_dssp HHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchH
Confidence 4557889999999988877777776665543 34331 12336777778888887743 3222 35
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhcc-----chhhhHHHHHHHHHHHH
Q 002877 689 FCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGV-----HFEKYVPHALQMMQEAA 744 (872)
Q Consensus 689 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~-----~~~~~l~~i~~~l~~~~ 744 (872)
+++.++..++..-.+- .+....+.++..+.++....|. .|..|+=.+.|..+...
T Consensus 837 ~l~~~l~~l~~~a~~~-~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p 896 (980)
T 3ibv_A 837 YFDPLINSILHFANLV-GEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMP 896 (980)
T ss_dssp THHHHHHHHHHHC------CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccC-CChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhh
Confidence 6777888777654431 1677888999999999887642 36665434666655553
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.76 E-value=1.6e-16 Score=174.30 Aligned_cols=365 Identities=12% Similarity=0.131 Sum_probs=250.3
Q ss_pred CCchHH---HHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHH--HHHHHHHhcccCCCCCHHHHHHHHHH
Q 002877 127 KQWPEL---IRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVN--AVLTAVVQGMNLAEHSAEVRLAATRA 201 (872)
Q Consensus 127 ~~~~~l---l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~--~l~~~l~~~l~~~~~~~~vr~~al~~ 201 (872)
..|++. ++.+++.++++ ++..|..|+..|..++........ ..... .++|.+.+.+.++ .+..+|..++.+
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~--~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~-~~~~v~~~a~~~ 88 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSK--SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRK-ENCTLQFESAWV 88 (450)
T ss_dssp ---------CHHHHHHHHSS--CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCT-TCHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCC-CCHHHHHHHHHH
Confidence 489888 99999999988 899999999999998653211122 22222 5888888889873 278999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcC-CChHHH
Q 002877 202 LYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKG-DEEAVA 279 (872)
Q Consensus 202 l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~-~~~~~~ 279 (872)
|..+...-.... ......-.++.+.++++++++++|..++.+|..++...+..-...+. .+++.++..+.+ .+++++
T Consensus 89 L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~ 167 (450)
T 2jdq_A 89 LTNIASGNSLQT-RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167 (450)
T ss_dssp HHHHHSSCHHHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHH
T ss_pred HHHHhcCCHHHH-HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHH
Confidence 998764211110 00001226788888899999999999999999998755432222222 356666777774 688999
Q ss_pred HHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHh
Q 002877 280 LQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVAR 359 (872)
Q Consensus 280 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~ 359 (872)
..++..+..++..... .. . ......++|.+...+... + ..++..+..+|..++.
T Consensus 168 ~~a~~~L~~l~~~~~~------------~~-~----~~~~~~~l~~L~~~l~~~-------~--~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 168 RNAVWALSNLCRGKSP------------PP-E----FAKVSPCLNVLSWLLFVS-------D--TDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHHHHHHHCCSSS------------CC-C----GGGTGGGHHHHHHHTTCC-------C--HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCC------------CC-C----HHHHHHHHHHHHHHHccC-------C--HHHHHHHHHHHHHHHC
Confidence 9999999999864210 00 0 112246777777776421 1 4688888889988876
Q ss_pred hcCCc----chhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHH
Q 002877 360 TVGDE----VVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTL 434 (872)
Q Consensus 360 ~~~~~----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l 434 (872)
..++. ....+++.+...+.+++|..|..++.+++.++.+.. ......+. .+++.+.+.+.++++.+|..|+++|
T Consensus 222 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 222 GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD-IQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300 (450)
T ss_dssp SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh-HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 43211 112456777778888999999999999999998652 32222333 6899999999999999999999999
Q ss_pred HHHHhhccCCCCCccccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH-HHHHHHHHH
Q 002877 435 SRIFELLHCPATGFSVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL-TSIIAELLR 511 (872)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~-~~il~~l~~ 511 (872)
++++..... .....+ ..+++.++..+.+ ++.+|..|++++++++.... +......+ ..+++.++.
T Consensus 301 ~~l~~~~~~-------~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~l~~~~~i~~L~~ 368 (450)
T 2jdq_A 301 SNITAGNRA-------QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS-----AEQIKYLVELGCIKPLCD 368 (450)
T ss_dssp HHHTTSCHH-------HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTCHHHHHH
T ss_pred HHHHcCCHH-------HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHCCCHHHHHH
Confidence 999853322 111122 2577888888888 99999999999999997631 22222222 357888888
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHhcC
Q 002877 512 AADRTDVGGSKLRSAAYETLNEVVRCS 538 (872)
Q Consensus 512 ~l~~~~~~~~~vr~~a~~al~~l~~~~ 538 (872)
.+... +..++..++++|..++...
T Consensus 369 ll~~~---~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 369 LLTVM---DSKIVQVALNGLENILRLG 392 (450)
T ss_dssp GGGSS---CHHHHHHHHHHHHHHHHHH
T ss_pred HhcCC---CHHHHHHHHHHHHHHHHhc
Confidence 88743 4667889999998887643
No 31
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.75 E-value=2.7e-12 Score=150.71 Aligned_cols=651 Identities=12% Similarity=0.089 Sum_probs=388.9
Q ss_pred HHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHh-hhhcCChHHHH
Q 002877 17 ANIRNEAEANLRQLQQQ----NLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAK-QWLAIDISYKS 91 (872)
Q Consensus 17 ~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~-~w~~l~~~~~~ 91 (872)
+-++++..+.+..+..+ ++|+++..+++.+.+ ++..+..+..+|+..... ... .-..++..-+.
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~EE--------V~~~~~~~l~~~r~~ 182 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLSEE--------VFDFSAEQMTQAKAL 182 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHHHH--------HHTSCTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH--------HHHhhhccchHHHHH
Confidence 45666677777775554 467788888887753 345566666666553210 000 00112222222
Q ss_pred -----------HHHHHHHHhhcC-CChhHhhHHHHHHHHHHHhhcCCC--CchHHHHHHH-HhhccCCccHHHHHHHHHH
Q 002877 92 -----------QVKDLLLRTLAS-PVPEARHTSAQVIAKIASIEIPQK--QWPELIRSLL-NNMTQQDSLAALKQATLET 156 (872)
Q Consensus 92 -----------~i~~~Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~--~~~~ll~~l~-~~l~~~~~~~~~r~~al~~ 156 (872)
.+.+.+.+.+.+ .++.+...+-++++....- .|-+ .-+++++.++ ..+. ++..|..|+.|
T Consensus 183 ~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W-I~i~~i~~~~ll~~l~~~~L~----~~~~r~~A~ec 257 (1023)
T 4hat_C 183 HLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW-IPYRYIYETNILELLSTKFMT----SPDTRAITLKC 257 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT-SCTHHHHSSSHHHHHHTHHHH----SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh-CCHHHhcchhHHHHHHHHHcC----CHHHHHHHHHH
Confidence 223333344433 4566666666666665431 1110 0135788888 6664 46789999999
Q ss_pred HHHhhhc-cCcc--ccchhhHHHHHHHHHhcc---------------cC-CCCCHHHHHHHHHHHHHHHHHHHhhhhhh-
Q 002877 157 LGYVCEE-ISHQ--DLVQDEVNAVLTAVVQGM---------------NL-AEHSAEVRLAATRALYNALDFALTNFQNE- 216 (872)
Q Consensus 157 l~~l~~~-~~~~--~l~~~~~~~l~~~l~~~l---------------~~-~~~~~~vr~~al~~l~~~~~~~~~~~~~~- 216 (872)
|..++.. ..++ .+ ...+..+++.++..+ .. ++.+.++...-.+.+..+.+....-+...
T Consensus 258 L~eIv~~~~~~~~~~~-~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~ 336 (1023)
T 4hat_C 258 LTEVSNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDE 336 (1023)
T ss_dssp HHHHHTSCCCSSCHHH-HHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCG
T ss_pred HHHHHccccCCchHHH-HHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999873 2112 12 223333333332211 11 11233444444445544443211111111
Q ss_pred hHHHH---HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhh------hhhHHhHHHHHHHHHHHhcCCC-------h----
Q 002877 217 MERNY---IMKVVCETAKSKEVEIRQAAFECLVSIASTYY------EVLEPYMQTLFELTSNAVKGDE-------E---- 276 (872)
Q Consensus 217 ~~~~~---ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------~~~~~~l~~l~~~~~~~~~~~~-------~---- 276 (872)
..++. .+..+..+...++.++...+++.|..+.+..+ ..+.+++..++..++..+.-+. +
T Consensus 337 ~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~ 416 (1023)
T 4hat_C 337 SLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEI 416 (1023)
T ss_dssp GGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCE
T ss_pred chhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccH
Confidence 11222 34466667777899999999999999987543 3467788888888877654432 0
Q ss_pred ---------H-HHHHHH-HhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcc
Q 002877 277 ---------A-VALQAV-EFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWN 345 (872)
Q Consensus 277 ---------~-~~~~al-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~ 345 (872)
+ -....+ +.+..++.- ...+.++.+++.+...+... + ..|.
T Consensus 417 ~~e~~~d~d~~~~f~~~Rd~L~~l~~l---------------------~~~~~~~~~~~~l~~~l~~~-----~--~~W~ 468 (1023)
T 4hat_C 417 VREFVKESDTIQLYKSEREVLVYLTHL---------------------NVIDTEEIMISKLARQIDGS-----E--WSWH 468 (1023)
T ss_dssp EECSSCCGGGHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHHSST-----T--CCHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHhcc---------------------CHHHHHHHHHHHHHHHhcCC-----C--CCHH
Confidence 0 000000 111111110 00112223333333333211 1 2399
Q ss_pred hhhhHHHHHHHHHhhcCC----cchhchHHHHHhhccC-----CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHH
Q 002877 346 ISMAGGTCLGLVARTVGD----EVVPLVMPFVEANIVK-----SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLL 416 (872)
Q Consensus 346 ~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~-----~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~ 416 (872)
.+.++.-+++.++....+ .+++.+++.+.....+ +...+|.++++++|.+++... .-..+++.+++.++
T Consensus 469 ~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~--~~~~~L~~vl~~L~ 546 (1023)
T 4hat_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVILKLF 546 (1023)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH--HCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH
Confidence 999999999999877642 3566677777666542 345677788899999887652 23457999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhhccCCCC-CccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCC
Q 002877 417 NAMRDENNHVKDTTAWTLSRIFELLHCPAT-GFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPS 494 (872)
Q Consensus 417 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~ 494 (872)
+.+.+++|+|+.+||+++..+++.+..... ..+....+|++.++..+...+.. .+.-+.....+++.++...
T Consensus 547 ~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~------ 620 (1023)
T 4hat_C 547 EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE------ 620 (1023)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC------
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC------
Confidence 999999999999999999999987653100 00112356899999888888877 7777788999999999886
Q ss_pred CCC--chhhHHHHHHHHHHhhccCC------------CcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Q 002877 495 SSL--LSPYLTSIIAELLRAADRTD------------VGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQ 560 (872)
Q Consensus 495 ~~~--l~~~~~~il~~l~~~l~~~~------------~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~ 560 (872)
+.. ...++..+++.+...++... .+..+.....+++++.++...| ..+.+++..+++.+++....
T Consensus 621 ~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg-~~f~~~~~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 621 RSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRA 699 (1023)
T ss_dssp CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHH
Confidence 322 34566666665554443211 0112224466788888899999 89999999999999887655
Q ss_pred H---HhhhhcC-----cchh--hhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHH-H
Q 002877 561 T---LELQIVS-----SDDR--EKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEE-A 629 (872)
Q Consensus 561 ~---~~~~~~~-----~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~-a 629 (872)
. +...+.. .+.+ ...-.++..++..+...+....+. ......+++++++.++.-..+..+..|+. .
T Consensus 700 ~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~---~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~v 776 (1023)
T 4hat_C 700 VSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL---DDVVKVLVEPLLNAVLEDYMNNVPDARDAEV 776 (1023)
T ss_dssp HHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH---HHHHHHTHHHHHHHHHHHHHHSCGGGCCHHH
T ss_pred HHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHhHHHHHHHHHHHHHhCChhhccHHH
Confidence 4 2111110 0000 011124455566666666554331 11234456788888887777666666654 4
Q ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHhh----hcc--cchHhHHHHHHHHHHHHHHHhcCCccc----cHHHHHHHHHH
Q 002877 630 MLAIGALAYATGPEFAKYMPEFYQYLQMG----LQN--SEEYQVCAITVGVVGDVCRALDDKVLP----FCDGIMSLLLN 699 (872)
Q Consensus 630 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~----l~~--~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~~ 699 (872)
+.+++.++...+..+.+.++.++..+..+ +++ .+.|+.|..-..++..+.......+.. .+..++..++-
T Consensus 777 L~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 856 (1023)
T 4hat_C 777 LNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICW 856 (1023)
T ss_dssp HHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHH
Confidence 66778888888887788888777766533 222 356889999999999998887654432 44566777777
Q ss_pred HhcCCCCCCCCchhHHHHHHHHHHhhc
Q 002877 700 ALSNSQLNRSVKPPILSCFGDIALAIG 726 (872)
Q Consensus 700 ~l~~~~~~~~~~~~~~~~l~~l~~~~~ 726 (872)
.+..+ ++++-...+.++.++.....
T Consensus 857 a~~h~--~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 857 AFKHN--NRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHTCC--CHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCC--chHHHHHHHHHHHHHHHHHH
Confidence 77777 78888888888877766543
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.74 E-value=8.3e-15 Score=169.54 Aligned_cols=524 Identities=10% Similarity=0.044 Sum_probs=330.9
Q ss_pred HHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhH
Q 002877 95 DLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEV 174 (872)
Q Consensus 95 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~ 174 (872)
..+++.|.+++..+|..+++.+..+.+.... ...++.|...+.++ ++.+|+.|+.+|..++........ ....
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~--d~~vr~~A~~~L~~L~~~~~~~~~-i~~~ 190 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHA-IMRS 190 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHTSHHHHHH-HTTC
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhCCChhHHH-HHhc
Confidence 4677888888999999999998866544332 45677777778777 889999999999999875321110 1113
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYE 254 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 254 (872)
+.+++.+...+.++ .+.++|..|+.+|..+... ..+ .......-.++.+..+++++++.++..++.+|..++...+.
T Consensus 191 ~~~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~-~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 191 PQMVSAIVRTMQNT-NDVETARCTSGTLHNLSHH-REG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTS-HHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred cChHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCC-chh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 46788888888753 4789999999999985432 111 11111122677888889989999999999999999987554
Q ss_pred hhHHhH-HHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcc
Q 002877 255 VLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQ 333 (872)
Q Consensus 255 ~~~~~l-~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 333 (872)
.-.... ...++.++..+.+.+.+++..++..+..++....+.. ..+.. ...++.++..+...
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~--------------~~i~~---~~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK--------------LIILA---SGGPQALVNIMRTY 330 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH--------------HHHHT---TTHHHHHHHHHTTC
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH--------------HHHHH---cCCHHHHHHHHhcC
Confidence 433332 2567778888888888887777766665553211000 00111 13456666666432
Q ss_pred cCCcccCCCCcchhhhHHHHHHHHHhhcC--Ccc-hhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHh
Q 002877 334 EEDQDQDDSIWNISMAGGTCLGLVARTVG--DEV-VPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHA 410 (872)
Q Consensus 334 ~~d~~~d~~~~~~r~~a~~~l~~l~~~~~--~~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~ 410 (872)
+ . ...+..+..++..++.... ..+ ....++.+...+.+.+...+..++.++..++.... .. .....
T Consensus 331 ~--~------~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~-~~--~~~~~ 399 (780)
T 2z6g_A 331 T--Y------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQ--EGMEG 399 (780)
T ss_dssp C--C------HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT-TC--SCCHH
T ss_pred C--H------HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch-hh--hhhhh
Confidence 1 0 2345566777777775321 111 12346778888888888888899999999987653 21 12357
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--C-hHHHHHHHHHHHHHHHh
Q 002877 411 GFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--A-PNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 411 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~-~~v~~~a~~al~~l~~~ 487 (872)
+++.+++.+.++++.+|..|+++|+.++..... ......-...++.|+..+.+ + ..++..|+++|++++..
T Consensus 400 ~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~------~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK------NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH------HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH------HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999753221 00000012356777777765 3 48999999999998743
Q ss_pred hccCCCCCCC--ch-h-hHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHHHHHHHHHHH
Q 002877 488 YEDAGPSSSL--LS-P-YLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA-ELLPAIMGRLGQTL 562 (872)
Q Consensus 488 ~~~~~~~~~~--l~-~-~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~ 562 (872)
. ++. .. . .-...++.|+..+...+ ...++..+.++|+.+..... ....+.+ .++|.+++.+....
T Consensus 474 ~------~~~~~~~~~v~~~~~l~~L~~lL~~~~--~~~v~~~A~~aL~nLa~~~~--~~~~i~~~g~i~~Lv~lL~~~~ 543 (780)
T 2z6g_A 474 H------QDAEMAQNAVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLLVRAH 543 (780)
T ss_dssp S------TTHHHHHHHHHHTTCHHHHHHTTSTTC--CHHHHHHHHHHHHHHHSSHH--HHHHHHHTTHHHHHHHHHHHHH
T ss_pred C------chHHHHHHHHHHcCCHHHHHHHhcCCC--hHHHHHHHHHHHHHHhcCHH--HHHHHHHCCCHHHHHHHHHhcc
Confidence 2 110 00 0 11245777888887432 34679999999999986322 2222222 46788877776531
Q ss_pred hhhh------cC---cchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH--HHHHHHHHHHHccCChhHHHHHHH
Q 002877 563 ELQI------VS---SDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA--DQIMVLFLRVFACRSSTVHEEAML 631 (872)
Q Consensus 563 ~~~~------~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~ 631 (872)
.... .+ ..+.....+++..++.+|..++.. . .....+ ...++.|+.++.+.+..++..+..
T Consensus 544 ~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~ 615 (780)
T 2z6g_A 544 QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--I------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 615 (780)
T ss_dssp HHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--H------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHH
T ss_pred hhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--h------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 1000 00 001112345777788888877521 1 111111 246778889999999999999999
Q ss_pred HHHHHHHHhhhHHHhhhHH--HHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 632 AIGALAYATGPEFAKYMPE--FYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 632 ~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
++..++.. ......+.. .++.|...+.+ .+.+++..|.++|..++...+
T Consensus 616 aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~-~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 616 VLCELAQD--KEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHTS--HHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcC--HHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCh
Confidence 99988632 223333333 67777777765 457799999999999987554
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.73 E-value=1.3e-15 Score=167.03 Aligned_cols=394 Identities=13% Similarity=0.096 Sum_probs=273.4
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHhh-hhhhHHhHH--HHHHHHHHHhcCC-ChHHHHHHHHhHhHHhHhhhhhhh
Q 002877 223 MKVVCETAKSKEVEIRQAAFECLVSIASTY-YEVLEPYMQ--TLFELTSNAVKGD-EEAVALQAVEFWSSICDEEIELQE 298 (872)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~--~l~~~~~~~~~~~-~~~~~~~al~~l~~l~~~~~~~~~ 298 (872)
++.+.+.++++++.+|..++..+..++... .......+. .+++.++..+.+. +++++..|+..|..++....+
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~--- 98 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL--- 98 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH---
Confidence 566677778889999999999999987632 222333333 4777777777877 889999999999998863211
Q ss_pred hcCCCCCCCCCCchHHHHHhH-HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC---Ccch-hchHHHH
Q 002877 299 FENPETGDSDSPNYHFIEKAR-SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG---DEVV-PLVMPFV 373 (872)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~---~~~~-~~l~~~l 373 (872)
..+... ...+|.++..+... + ..+|..|..+|..++...+ +.+. ..+++.+
T Consensus 99 ---------------~~~~~~~~~~i~~L~~lL~~~-------~--~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 154 (450)
T 2jdq_A 99 ---------------QTRIVIQAGAVPIFIELLSSE-------F--EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154 (450)
T ss_dssp ---------------HHHHHHHTTHHHHHHHHTTCS-------C--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred ---------------HHHHHHhCCCHHHHHHHHcCC-------C--HHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHH
Confidence 111111 35778888777532 1 6789999999999986532 1111 2356667
Q ss_pred HhhccC-CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccC
Q 002877 374 EANIVK-SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVIS 452 (872)
Q Consensus 374 ~~~l~~-~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 452 (872)
...+.+ .++..|..++.+++.++.+..+......+..++|.+++.+.++++.+|..++|+++.++..... ..
T Consensus 155 ~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-------~~ 227 (450)
T 2jdq_A 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND-------KI 227 (450)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH-------HH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH-------HH
Confidence 777774 6899999999999999976422222334578899999999999999999999999999864321 00
Q ss_pred cc-cHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH-HHHHHHHHHhhccCCCcchhHHHHHHH
Q 002877 453 PE-NLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL-TSIIAELLRAADRTDVGGSKLRSAAYE 529 (872)
Q Consensus 453 ~~-~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~ 529 (872)
.. .-..+++.++..+.+ ++.++..|++++++++... +......+ ..+++.+...+... +..+|..++.
T Consensus 228 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~---~~~vr~~a~~ 298 (450)
T 2jdq_A 228 QAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD------DIQTQVILNCSALQSLLHLLSSP---KESIKKEACW 298 (450)
T ss_dssp HHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC------HHHHHHHHTTTHHHHHHHHTTCS---SHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC------hHHHHHHHHCccHHHHHHHHcCC---CHHHHHHHHH
Confidence 01 112467888888887 9999999999999998653 11111111 25788888888743 4677999999
Q ss_pred HHHHHHhcCCCcccHHHHH-HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH-
Q 002877 530 TLNEVVRCSNITETSQIIA-ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA- 607 (872)
Q Consensus 530 al~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~- 607 (872)
+|+.++...+ ......++ .++|.+++.+.. ...+++..++.++.+++.....+ ......
T Consensus 299 ~L~~l~~~~~-~~~~~~~~~~~l~~L~~~l~~-------------~~~~v~~~a~~~L~~l~~~~~~~-----~~~~l~~ 359 (450)
T 2jdq_A 299 TISNITAGNR-AQIQTVIDANIFPALISILQT-------------AEFRTRKEAAWAITNATSGGSAE-----QIKYLVE 359 (450)
T ss_dssp HHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHH-------------SCHHHHHHHHHHHHHHHHHCCHH-----HHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhc-------------CCHHHHHHHHHHHHHHHcCCCHH-----HHHHHHH
Confidence 9999987544 33333443 677777777763 12468889999999998764331 232222
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhH-------HHhhhHHH-----HHHHHhhhcccchHhHHHHHHHHH
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPE-------FAKYMPEF-----YQYLQMGLQNSEEYQVCAITVGVV 675 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-------~~~~l~~i-----~~~l~~~l~~~~~~~v~~~a~~~l 675 (872)
..+++.++.++.+.++.+++.++.++..++...+.. ..+|...+ ++.+.... ++.+.+++..|..++
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l 438 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ-SHENQEIYQKAFDLI 438 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 258889999999989999999999999998765432 13455544 56665544 344567888888887
Q ss_pred HHHH
Q 002877 676 GDVC 679 (872)
Q Consensus 676 ~~l~ 679 (872)
..+.
T Consensus 439 ~~~~ 442 (450)
T 2jdq_A 439 EHYF 442 (450)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 7663
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.72 E-value=3e-16 Score=175.31 Aligned_cols=403 Identities=13% Similarity=0.137 Sum_probs=272.5
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhccCCCCC
Q 002877 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDEN-NHVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 370 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
++.+...+.++++..|..|+.++..++...........+. .++|.+++.|.+++ +.+|..|+|+|++++.....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~---- 151 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE---- 151 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH----
Confidence 5666666778889999999999999976543122333333 78999999999887 99999999999999864322
Q ss_pred ccccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHH--HHHHHHHHhhccCCCcchhH
Q 002877 448 FSVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLT--SIIAELLRAADRTDVGGSKL 523 (872)
Q Consensus 448 ~~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~--~il~~l~~~l~~~~~~~~~v 523 (872)
...... ...++.|+..+.+ ++.++..|+++|++++... ......+. .+++.++..+.. ..+..+
T Consensus 152 ---~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-------~~~~~~i~~~g~l~~Ll~lL~~--~~~~~v 219 (528)
T 4b8j_A 152 ---NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS-------PKCRDLVLANGALLPLLAQLNE--HTKLSM 219 (528)
T ss_dssp ---HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-------HHHHHHHHHTTCHHHHHHTCCT--TCCHHH
T ss_pred ---HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-------hhhHHHHHHCCcHHHHHHHHhc--CCCHHH
Confidence 011111 1478889999988 9999999999999998652 11112221 467788888852 234667
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhc
Q 002877 524 RSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFI 603 (872)
Q Consensus 524 r~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 603 (872)
+..+.++|..+....+ ..........+|.++..+.. ...+++..++.+|.+++..... ..
T Consensus 220 ~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~-------------~~~~v~~~a~~aL~~l~~~~~~------~~ 279 (528)
T 4b8j_A 220 LRNATWTLSNFCRGKP-QPSFEQTRPALPALARLIHS-------------NDEEVLTDACWALSYLSDGTND------KI 279 (528)
T ss_dssp HHHHHHHHHHHHCSSS-CCCHHHHTTHHHHHHHHTTC-------------CCHHHHHHHHHHHHHHTSSCHH------HH
T ss_pred HHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHcCCHH------HH
Confidence 9999999999998765 44455566777777766542 1245778888898888632111 11
Q ss_pred hhhHH-HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHH
Q 002877 604 LQTAD-QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRA 681 (872)
Q Consensus 604 ~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 681 (872)
..... .+++.++.++.+.+..++..|+.+++.++..........+ ..++|.|...+.+..++.++..|+++|+.++..
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 12222 5778899999999999999999999999875443333322 357888888887653567999999999999863
Q ss_pred hcCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhH--HHHHHHHHHHHHhccccCCCchHHH
Q 002877 682 LDDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYV--PHALQMMQEAAKACAQLDMEDEELI 758 (872)
Q Consensus 682 ~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~~~~~~~~~~~d~~~~ 758 (872)
........+ ..+++.|+..|.+. +..++..++.++++++.........++ ..+++.+...+... |
T Consensus 360 ~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~------d---- 427 (528)
T 4b8j_A 360 NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP------D---- 427 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS------C----
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC------C----
Confidence 222222222 25678888888877 788999999999999987444444444 25666676664431 1
Q ss_pred HHHHHHHHHHHHHHHhHhhccchhhh---hhhhhhHHH-----HHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhh
Q 002877 759 DYGNQLRSSIFEAYSGILQGFKSARA---EVMMPYAQH-----LLQFIELIFKDNHRDENVTKAAVAVMGDLADA 825 (872)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~-----il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~ 825 (872)
..++..++.++..++..-..... ....+|... .++.+..+... .+++++..|..++..+...
T Consensus 428 ---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~--~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 428 ---IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH--DNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC--CCHHHHHHHHHHHHHHCCC
Confidence 25677777777777664322100 012223322 24455555433 5789999999999876543
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.71 E-value=4.2e-16 Score=174.01 Aligned_cols=402 Identities=12% Similarity=0.161 Sum_probs=272.8
Q ss_pred hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhccCC
Q 002877 367 PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDE-NNHVKDTTAWTLSRIFELLHCP 444 (872)
Q Consensus 367 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~ 444 (872)
...++.+.+.+.++++..|..|+.++..+............+. .++|.+++.|.++ ++.+|..|+|+|+.++.....
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~- 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA- 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-
Confidence 3446677777788899999999999999876532122333333 7899999999987 899999999999999864321
Q ss_pred CCCccccCcccH--HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh--HHHHHHHHHHhhccCCCc
Q 002877 445 ATGFSVISPENL--QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY--LTSIIAELLRAADRTDVG 519 (872)
Q Consensus 445 ~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~--~~~il~~l~~~l~~~~~~ 519 (872)
....+ ...++.|+..+.+ ++.++..|+++|++++... ...... -..+++.++..+.. .
T Consensus 165 -------~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~-------~~~~~~~~~~~~l~~L~~ll~~---~ 227 (530)
T 1wa5_B 165 -------QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS-------TDYRDYVLQCNAMEPILGLFNS---N 227 (530)
T ss_dssp -------HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHTTCHHHHHHGGGS---C
T ss_pred -------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-------ccchHHHHHcCcHHHHHHHhcc---C
Confidence 01111 2457788888887 9999999999999998642 111111 12567888888874 3
Q ss_pred chhHHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCcc
Q 002877 520 GSKLRSAAYETLNEVVRCS-NITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDA 598 (872)
Q Consensus 520 ~~~vr~~a~~al~~l~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 598 (872)
+..++..+.++|..++... + .........++|.++..+.. ....++..++.+|.+++.....
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~lL~~-------------~d~~v~~~a~~~L~~L~~~~~~--- 290 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKP-QPDWSVVSQALPTLAKLIYS-------------MDTETLVDACWAISYLSDGPQE--- 290 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSS-CCCHHHHGGGHHHHHHHTTC-------------CCHHHHHHHHHHHHHHHSSCHH---
T ss_pred CHHHHHHHHHHHHHHhCCCCC-CCcHHHHHhHHHHHHHHHcC-------------CCHHHHHHHHHHHHHHhCCCHH---
Confidence 4667999999999999776 3 33344556677777765542 1245778889999988743222
Q ss_pred chhhchhhHH-HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHHHHHH
Q 002877 599 TKSFILQTAD-QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITVGVVG 676 (872)
Q Consensus 599 ~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 676 (872)
....... .+++.++.++.+.++.++..++.+++.++...+......+ ..++|.+...+.+. ++.++..|+++|+
T Consensus 291 ---~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 291 ---AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTIS 366 (530)
T ss_dssp ---HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ---HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 2222222 5778888999988999999999999999865443333333 26888888888875 5679999999999
Q ss_pred HHHHHhcCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhcc--chhhhHH--HHHHHHHHHHHhccccC
Q 002877 677 DVCRALDDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGV--HFEKYVP--HALQMMQEAAKACAQLD 751 (872)
Q Consensus 677 ~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~--~i~~~l~~~~~~~~~~~ 751 (872)
.++.........++ ..+++.|+..|.++ +..++..++.++++++...+. ....++- .+++.+...+...
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~---- 440 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA--EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA---- 440 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC----
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC----
Confidence 99753322222222 25678888888776 788999999999999986543 3333333 3667777664431
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhHhhccchhh---hhhhhhhHHHH-----HHHHHHHhcCCCCCHhHHHHHHHHHHHHH
Q 002877 752 MEDEELIDYGNQLRSSIFEAYSGILQGFKSAR---AEVMMPYAQHL-----LQFIELIFKDNHRDENVTKAAVAVMGDLA 823 (872)
Q Consensus 752 ~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~i-----l~~l~~~~~~~~~~~~~~~~a~~~l~~l~ 823 (872)
+ ..++..++.++..++....... .....+|...+ ++.|..+..+ .+++++..|..+|..+.
T Consensus 441 --~-------~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~--~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 441 --D-------NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN--ENDKIYEKAYKIIETYF 509 (530)
T ss_dssp --C-------HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC--SCHHHHHHHHHHHHHHS
T ss_pred --C-------HHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHC
Confidence 1 3567777777777765432210 00123344333 5566665544 57889999998888765
Q ss_pred h
Q 002877 824 D 824 (872)
Q Consensus 824 ~ 824 (872)
.
T Consensus 510 ~ 510 (530)
T 1wa5_B 510 G 510 (530)
T ss_dssp S
T ss_pred C
Confidence 4
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.69 E-value=4.1e-15 Score=165.99 Aligned_cols=366 Identities=12% Similarity=0.118 Sum_probs=249.7
Q ss_pred CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 002877 128 QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 207 (872)
.+...++.+++.+.++ ++..+..|+..|..++..........-.-..++|.+...+.++ .++.+|..|+.+|..+..
T Consensus 84 ~~~~~i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~ 160 (530)
T 1wa5_B 84 QLQQELPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIAS 160 (530)
T ss_dssp ---CCHHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhC
Confidence 3556688999999988 8899999999999987653211110112245788899999873 278999999999998754
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhH
Q 002877 208 FALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFW 286 (872)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l 286 (872)
..... .......-.++.+..++.+++++++..++.+|..++...+..-...+. .+++.++..+.+.+.+++..|+..+
T Consensus 161 ~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 239 (530)
T 1wa5_B 161 GTSAQ-TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL 239 (530)
T ss_dssp SCHHH-HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHH
Confidence 21110 000000114667777777889999999999999998653322111111 4566677777778889999999999
Q ss_pred hHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC---
Q 002877 287 SSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD--- 363 (872)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~--- 363 (872)
..++..... . .. ......++|.+...+...+ ..++..+..+|..++...++
T Consensus 240 ~~L~~~~~~-------------~--~~--~~~~~~~l~~L~~lL~~~d---------~~v~~~a~~~L~~L~~~~~~~~~ 293 (530)
T 1wa5_B 240 SNLCRGKKP-------------Q--PD--WSVVSQALPTLAKLIYSMD---------TETLVDACWAISYLSDGPQEAIQ 293 (530)
T ss_dssp HHHHCCSSS-------------C--CC--HHHHGGGHHHHHHHTTCCC---------HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHhCCCCC-------------C--Cc--HHHHHhHHHHHHHHHcCCC---------HHHHHHHHHHHHHHhCCCHHHHH
Confidence 998864210 0 00 1233567788877764311 56888999999998864321
Q ss_pred cch-hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhc
Q 002877 364 EVV-PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELL 441 (872)
Q Consensus 364 ~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
.+. ..+++.+...+.+++|..|..++.+++.++.+.. ......+. .+++.++..|.++++.+|..|+|+|+.++...
T Consensus 294 ~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~ 372 (530)
T 1wa5_B 294 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 372 (530)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH-HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 111 2467778888888999999999999999997652 33333333 78999999999999999999999999998633
Q ss_pred cCCCCCccccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCC-CCchhhHH--HHHHHHHHhhccC
Q 002877 442 HCPATGFSVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSS-SLLSPYLT--SIIAELLRAADRT 516 (872)
Q Consensus 442 ~~~~~~~~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~-~~l~~~~~--~il~~l~~~l~~~ 516 (872)
.. .....+ ..+++.|+..+.+ ++.++..|+++|++++.... + .....++- .+++.++..+...
T Consensus 373 ~~-------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-----~~~~~~~~l~~~~~l~~L~~ll~~~ 440 (530)
T 1wa5_B 373 TE-------QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL-----QRPDIIRYLVSQGCIKPLCDLLEIA 440 (530)
T ss_dssp HH-------HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-----TCTHHHHHHHHTTCHHHHHHHTTTC
T ss_pred HH-------HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-----CcHHHHHHHHHCCCHHHHHHHHhCC
Confidence 22 111111 2467778888877 99999999999999998641 1 02222222 3777888887632
Q ss_pred CCcchhHHHHHHHHHHHHHhcCC
Q 002877 517 DVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 517 ~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
+..++..++++|..++...+
T Consensus 441 ---~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 441 ---DNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHhhh
Confidence 46678888888888876543
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.68 E-value=2.8e-14 Score=165.14 Aligned_cols=516 Identities=12% Similarity=0.098 Sum_probs=313.1
Q ss_pred CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 002877 128 QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 207 (872)
.+..-++.+++.+.++ +...|..++..+...-+ .......+|.+...+.+ .+..+|..|+.+|..+..
T Consensus 112 ~~~~~i~~lv~~L~~~--~~~~r~~a~~~l~~~~~--------~~i~~g~ip~Lv~lL~~--~d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEP--SQMLKHAVVNLINYQDD--------AELATRAIPELTKLLND--EDQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp --------------CC--SCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHhcCc--cHHHHHHHHHHHHhhhH--------HHHHhCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhC
Confidence 3444578888889888 77788888887764421 11225567777777776 678999999999998754
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHh
Q 002877 208 FALTNFQNEMERNYIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEF 285 (872)
Q Consensus 208 ~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~ 285 (872)
...... .-...+-+++.+.+.+. +.++++|..++.+|..+.... ........ ..++.++..+++.++.++..|+..
T Consensus 180 ~~~~~~-~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~a 257 (780)
T 2z6g_A 180 KEASRH-AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITT 257 (780)
T ss_dssp SHHHHH-HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CChhHH-HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 221100 00001125666666665 348999999999999976532 21111111 467777888888899999999999
Q ss_pred HhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH-HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC-
Q 002877 286 WSSICDEEIELQEFENPETGDSDSPNYHFIEKAR-SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD- 363 (872)
Q Consensus 286 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~- 363 (872)
+..++..... ....+. ...++.++..+... .+.++..+..+|..++....+
T Consensus 258 L~nLa~~~~~------------------~~~~v~~~g~v~~Lv~lL~~~---------~~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 258 LHNLLLHQEG------------------AKMAVRLAGGLQKMVALLNKT---------NVKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp HHHHHHHSTT------------------HHHHHHHTTHHHHHHHGGGCC---------CHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCChh------------------hHHHHHHcCCHHHHHHHHhcC---------CHHHHHHHHHHHHHHhcCChHH
Confidence 9999875221 111121 25777777777531 167888888888877742210
Q ss_pred --c-chhchHHHHHhhccCCCc-chHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 002877 364 --E-VVPLVMPFVEANIVKSDW-RCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIF 438 (872)
Q Consensus 364 --~-~~~~l~~~l~~~l~~~~~-~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 438 (872)
. .....++.+...+.+.+. ..++.++.++..++... ......+. .+++.++..+.+.++.++..+++++..++
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 0 111224444445555443 34567788888887532 22222223 67899999999999999999999999998
Q ss_pred hhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh-HHHHHHHHHHhhccC
Q 002877 439 ELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY-LTSIIAELLRAADRT 516 (872)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~-~~~il~~l~~~l~~~ 516 (872)
..... ......+++.|+..+.+ ++.++..|+++|.+++... +...... -...++.++..+...
T Consensus 389 ~~~~~---------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~------~~~~~~i~~~g~i~~Lv~lL~~~ 453 (780)
T 2z6g_A 389 DAATK---------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN------YKNKMMVCQVGGIEALVRTVLRA 453 (780)
T ss_dssp TTCTT---------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC------HHHHHHHHTTTHHHHHHHHHHHH
T ss_pred ccchh---------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC------HHHHHHHHHCCCHHHHHHHHHcc
Confidence 76543 12346789999999988 9999999999999997542 1000011 124567777777532
Q ss_pred CCcchhHHHHHHHHHHHHHhcCCCcc--cH-HHH-HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHH
Q 002877 517 DVGGSKLRSAAYETLNEVVRCSNITE--TS-QII-AELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQK 592 (872)
Q Consensus 517 ~~~~~~vr~~a~~al~~l~~~~~~~~--~~-~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 592 (872)
+ ....++..+..+|+.+....+ +. .. ... ...+|.++..+... ....++..++.+|.++...
T Consensus 454 ~-~~~~v~~~Al~aL~nL~~~~~-~~~~~~~~v~~~~~l~~L~~lL~~~------------~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 454 G-DREDITEPAICALRHLTSRHQ-DAEMAQNAVRLHYGLPVVVKLLHPP------------SHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp T-TCHHHHHHHHHHHHHTTSSST-THHHHHHHHHHTTCHHHHHHTTSTT------------CCHHHHHHHHHHHHHHHSS
T ss_pred C-CHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHcCCHHHHHHHhcCC------------ChHHHHHHHHHHHHHHhcC
Confidence 2 123679999999999865444 21 01 111 13455555444321 1135778889999988631
Q ss_pred cCCCccchhhchhhH-HHHHHHHHHHHccCC----------------------hhHHHHHHHHHHHHHHHhhhHHHhhh-
Q 002877 593 FSSTDATKSFILQTA-DQIMVLFLRVFACRS----------------------STVHEEAMLAIGALAYATGPEFAKYM- 648 (872)
Q Consensus 593 ~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~----------------------~~v~~~a~~~l~~l~~~~~~~~~~~l- 648 (872)
.. ...... ..+++.|+.++.+.+ ..+++.+..+|+.++... .....+
T Consensus 520 --~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~~~~l~ 590 (780)
T 2z6g_A 520 --PA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HNRIVIR 590 (780)
T ss_dssp --HH-----HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HHHHHHH
T ss_pred --HH-----HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hhHHHHH
Confidence 10 111111 134555555554322 346667777777775321 111111
Q ss_pred -HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHH--HHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhh
Q 002877 649 -PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCD--GIMSLLLNALSNSQLNRSVKPPILSCFGDIALAI 725 (872)
Q Consensus 649 -~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~ 725 (872)
...+|.|...+.+. +..++..|+.+|+.++.. ......+. ..++.|.+++.++ +..+|..+..++..++..-
T Consensus 591 ~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~--~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 591 GLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSR--NEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HTCCHHHHHHGGGCS-CHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTS
T ss_pred HCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC
Confidence 24678888888765 466999999999988632 11222222 2567788888877 8899999999999998765
Q ss_pred ccch
Q 002877 726 GVHF 729 (872)
Q Consensus 726 ~~~~ 729 (872)
+..+
T Consensus 666 ~~~~ 669 (780)
T 2z6g_A 666 PQDY 669 (780)
T ss_dssp CTTH
T ss_pred hHhh
Confidence 5433
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.68 E-value=2.3e-13 Score=153.18 Aligned_cols=478 Identities=11% Similarity=0.041 Sum_probs=299.1
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCC
Q 002877 224 KVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPE 303 (872)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 303 (872)
..+.+.+++++.+.|+.++-.+..++...++. +--+++.+...+++.++.+|..|+.+++.+...
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~----~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~----------- 137 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLDERQDV----HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS----------- 137 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----------
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----------
Confidence 33445666788999988888777776554432 223566677788899999999999988888642
Q ss_pred CCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcc
Q 002877 304 TGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWR 383 (872)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 383 (872)
...+.+++.+...+...+ ..+|++|..++..+....|+ ..+.+++.+...+.|+++.
T Consensus 138 -------------~~~~~l~~~l~~~L~~~~---------~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~~lL~D~d~~ 194 (618)
T 1w63_A 138 -------------EMCRDLAGEVEKLLKTSN---------SYLRKKAALCAVHVIRKVPE-LMEMFLPATKNLLNEKNHG 194 (618)
T ss_dssp -------------HHHHHHHHHHHHHHHSCC---------HHHHHHHHHHHHHHHHHCGG-GGGGGGGGTTTSTTCCCHH
T ss_pred -------------HHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHHhCCCCHh
Confidence 123456677777765321 68999999999999987765 4567788888999999999
Q ss_pred hHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC---------------CCcHHHHHHHHHHHHHHHhhccCCCCCc
Q 002877 384 CREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR---------------DENNHVKDTTAWTLSRIFELLHCPATGF 448 (872)
Q Consensus 384 ~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~---------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
++.+|+.+++.++... ++ ....+..++|.+++.|. .++|..+...+.+++.++..-+.
T Consensus 195 V~~~Al~~L~~i~~~~-~~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~----- 267 (618)
T 1w63_A 195 VLHTSVVLLTEMCERS-PD-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD----- 267 (618)
T ss_dssp HHHHHHHHHHHHCCSH-HH-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-----
T ss_pred HHHHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-----
Confidence 9999999999998643 12 12234455665555543 35889999899998888753221
Q ss_pred cccCcccHHHHHHHHHHHhh---c-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHH
Q 002877 449 SVISPENLQRILTVLLESIK---D-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLR 524 (872)
Q Consensus 449 ~~~~~~~~~~~l~~l~~~l~---d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr 524 (872)
..+.+..++..++.... + +..|...|+.++..+. .. .......++.+...+.+. +.++|
T Consensus 268 ---~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~---------~~--~~l~~~a~~~L~~~L~~~---d~~vr 330 (618)
T 1w63_A 268 ---SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK---------SE--SGLRVLAINILGRFLLNN---DKNIR 330 (618)
T ss_dssp ---HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC---------CC--HHHHHHHHHHHHHHHTCS---STTTH
T ss_pred ---HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC---------CC--HHHHHHHHHHHHHHHhCC---CCchH
Confidence 11122334444433221 2 4466666666665431 11 122234455555555532 24557
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhch
Q 002877 525 SAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFIL 604 (872)
Q Consensus 525 ~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 604 (872)
..++.+++.++...+ . .+.
T Consensus 331 ~~aL~~L~~i~~~~p-------------------------------------------------------~------~~~ 349 (618)
T 1w63_A 331 YVALTSLLKTVQTDH-------------------------------------------------------N------AVQ 349 (618)
T ss_dssp HHHHHHHHHHHHHHH-------------------------------------------------------H------HHG
T ss_pred HHHHHHHHHHHhhCH-------------------------------------------------------H------HHH
Confidence 777777776665433 1 222
Q ss_pred hhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 605 QTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 605 ~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
++ ...++.++.+.+..+|..++.++..++.. ..+ +.+++.+...+.+ .+.+++..++..++.++..+..
T Consensus 350 ~~----~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~nv----~~iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~~~ 418 (618)
T 1w63_A 350 RH----RSTIVDCLKDLDVSIKRRAMELSFALVNG--NNI----RGMMKELLYFLDS-CEPEFKADCASGIFLAAEKYAP 418 (618)
T ss_dssp GG----HHHHHHGGGSSCHHHHHHHHHHHHHHCCS--SST----HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSSCC
T ss_pred HH----HHHHHHHccCCChhHHHHHHHHHHHHccc--ccH----HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCc
Confidence 22 34566678888999999999999888652 222 3344555555544 3567999999999999887654
Q ss_pred CccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHH
Q 002877 685 KVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQL 764 (872)
Q Consensus 685 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~ 764 (872)
. ..+.++.+++.+... ...++..++.++.++....++.-. .+++.+...+...... + .+
T Consensus 419 ~----~~~~v~~ll~lL~~~--~~~v~~~~~~~l~~ii~~~p~l~~----~~v~~L~~~l~~~~~~---~--------~~ 477 (618)
T 1w63_A 419 S----KRWHIDTIMRVLTTA--GSYVRDDAVPNLIQLITNSVEMHA----YTVQRLYKAILGDYSQ---Q--------PL 477 (618)
T ss_dssp C----HHHHHHHHHHHHHHT--GGGSCSSHHHHHHHHHHHSCSTHH----HHHHHHHHHHHHCCSC---S--------HH
T ss_pred c----HHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcChhHHH----HHHHHHHHHHhccccc---H--------HH
Confidence 4 455566677777665 456778888899888876654322 2333344443321000 0 11
Q ss_pred HHHHHHHHHhHhhccchhhhh-------hhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCc
Q 002877 765 RSSIFEAYSGILQGFKSARAE-------VMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDS 837 (872)
Q Consensus 765 ~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 837 (872)
.. +...+++..+..... .+......++..+...+.....+..+|..++.++..+....+.. .
T Consensus 478 ~~----~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~-------~ 546 (618)
T 1w63_A 478 VQ----VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT-------V 546 (618)
T ss_dssp HH----HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC-------H
T ss_pred HH----HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch-------H
Confidence 11 122232222211000 00001233445555544332357899999999999998877642 3
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 002877 838 SFCNDFMSECLRSDDEQLKETAGWTQGMIN 867 (872)
Q Consensus 838 ~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~ 867 (872)
+.+..++..+..|.++++|+.|...+..+.
T Consensus 547 ~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 547 NRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 567788888888999999999997776654
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.67 E-value=1.4e-14 Score=165.31 Aligned_cols=489 Identities=10% Similarity=0.065 Sum_probs=301.5
Q ss_pred hhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCc--c--hhchHHHHHhhccCC-CcchHHHHHHHHHHh
Q 002877 321 SLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDE--V--VPLVMPFVEANIVKS-DWRCREAATYAFGSV 395 (872)
Q Consensus 321 ~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~--~--~~~l~~~l~~~l~~~-~~~~r~aal~~l~~i 395 (872)
..+|.+...+... + ..+|..|..+|..++...... + .+..++.+...+.+. ++..|..++.+|..+
T Consensus 14 g~i~~Lv~lL~~~-------~--~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 14 RAIPELTKLLNDE-------D--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp TTHHHHHHHHTCS-------C--HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCC-------C--HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3456666666421 1 578999999999998765311 1 123456666666554 778899999999988
Q ss_pred hcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH-HHHHHHHHHHhhc-ChH
Q 002877 396 LEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL-QRILTVLLESIKD-APN 472 (872)
Q Consensus 396 ~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d-~~~ 472 (872)
+... +....... ..++.+++.++++++.+|..|+++|.+++..... ...... ...++.|+..+.+ +++
T Consensus 85 s~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-------~~~~v~~~g~i~~Lv~lL~~~~~~ 155 (644)
T 2z6h_A 85 SHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-------AKMAVRLAGGLQKMVALLNKTNVK 155 (644)
T ss_dssp TTSH--HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-------HHHHHHHTTHHHHHHHGGGCCCHH
T ss_pred hcCh--hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-------hHHHHHHCCChHHHHHHHCcCCHH
Confidence 7642 22122222 6889999999999999999999999999876432 111121 4578889999988 888
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH-HHH
Q 002877 473 VAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA-ELL 551 (872)
Q Consensus 473 v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~-~l~ 551 (872)
++..++.+|..++.... .....-.-...++.++..+...+ ...++..+..++..+..... ......+ ..+
T Consensus 156 ~~~~a~~~L~~La~~~~-----~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l 226 (644)
T 2z6h_A 156 FLAITTDCLQILAYGNQ-----ESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGM 226 (644)
T ss_dssp HHHHHHHHHHHHHTTCH-----HHHHHHHHTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCTT--HHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhcCc-----HHHHHHHHcCChHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCH
Confidence 88888889998885320 00000011245777888887443 34457778888887765322 2222222 345
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHH
Q 002877 552 PAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAML 631 (872)
Q Consensus 552 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~ 631 (872)
+.++..+.. ....++..++.++.+++..... . .....+++.++.++.+.+..+++.+..
T Consensus 227 ~~L~~ll~~-------------~~~~~~~~a~~~L~nL~~~~~~------~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~ 285 (644)
T 2z6h_A 227 QALGLHLTD-------------PSQRLVQNCLWTLRNLSDAATK------Q--EGMEGLLGTLVQLLGSDDINVVTCAAG 285 (644)
T ss_dssp HHHHTTTTC-------------SCHHHHHHHHHHHHHHGGGCTT------C--CSCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhc-------------CCHHHHHHHHHHHHHHhhcchh------h--hhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 555444331 1245778888999998755333 1 123478889999999999999999999
Q ss_pred HHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccch-HhHHHHHHHHHHHHHHHhcCC--ccc--cHHHHHHHHHHHhcCCC
Q 002877 632 AIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEE-YQVCAITVGVVGDVCRALDDK--VLP--FCDGIMSLLLNALSNSQ 705 (872)
Q Consensus 632 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~~~--~~~--~~~~i~~~l~~~l~~~~ 705 (872)
+++.++........... ...++.|...+.+..+ .+++..|+.+|+.++...++. ... .....++.|.+.|.++.
T Consensus 286 aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~ 365 (644)
T 2z6h_A 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccC
Confidence 99999764322211111 2467777777765332 579999999999996432210 000 11246788889888762
Q ss_pred CCCCCchhHHHHHHHHHHhhccchhhhH-HHHHHHHHHHHHhcc-ccCC------CchHH--HHHHHHHHHHHHHHHHhH
Q 002877 706 LNRSVKPPILSCFGDIALAIGVHFEKYV-PHALQMMQEAAKACA-QLDM------EDEEL--IDYGNQLRSSIFEAYSGI 775 (872)
Q Consensus 706 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~~~~~~-~~~~------~d~~~--~~~~~~~~~~~~~~~~~~ 775 (872)
+..++..++.++++++...... .... ..++|.+...+.... +... ..... .....++++.++.++..+
T Consensus 366 -~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~L 443 (644)
T 2z6h_A 366 -HWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 443 (644)
T ss_dssp -CHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHH
Confidence 3578999999999988643221 2221 245566666554311 0000 00000 001235666667777666
Q ss_pred hhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHH
Q 002877 776 LQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQL 855 (872)
Q Consensus 776 ~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~ 855 (872)
...-. . ...+. -...++.+..++.+ .+++++..++.+|+.++.. ++.-......+.+..+.. .+.++++++
T Consensus 444 a~~~~-~-~~~l~--~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~-ll~~~~~~v 514 (644)
T 2z6h_A 444 ARDVH-N-RIVIR--GLNTIPLFVQLLYS--PIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTE-LLHSRNEGV 514 (644)
T ss_dssp TTSHH-H-HHHHH--HTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHH-HTTCSCHHH
T ss_pred hcCHH-H-HHHHH--hCCcHHHHHHHHcC--CCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHH-HHcCCCHHH
Confidence 54321 1 11111 12345666666655 5688999999999988753 111111222334666665 488999999
Q ss_pred HHHHHHHHHHHHH
Q 002877 856 KETAGWTQGMINR 868 (872)
Q Consensus 856 ~~~a~~~~~~~~~ 868 (872)
|..|+|+++.+++
T Consensus 515 r~~A~~aL~~l~~ 527 (644)
T 2z6h_A 515 ATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998865
No 40
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.66 E-value=3.7e-15 Score=166.44 Aligned_cols=355 Identities=11% Similarity=0.142 Sum_probs=250.1
Q ss_pred hHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcc-----hhchHHHHHhhccCCC-cchHHHHHHHHHHh
Q 002877 322 LVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEV-----VPLVMPFVEANIVKSD-WRCREAATYAFGSV 395 (872)
Q Consensus 322 l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~-----~~~l~~~l~~~l~~~~-~~~r~aal~~l~~i 395 (872)
-+|.++..+...+ +.++..|..++..+....+... ...++|.+.+.+.+++ +..|..|+.+|+.+
T Consensus 75 ~l~~lv~~L~s~~---------~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l 145 (528)
T 4b8j_A 75 SLPAMIGGVYSDD---------NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNI 145 (528)
T ss_dssp CHHHHHHHHTSSC---------HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---------HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3566666664321 5678888888888876543111 1245777777887776 89999999999999
Q ss_pred hcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHH--HHHHHHHHHh-hc-C
Q 002877 396 LEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQ--RILTVLLESI-KD-A 470 (872)
Q Consensus 396 ~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~l-~d-~ 470 (872)
+.+.. +.....+. ..+|.++..+.++++.+|..|+|+|++++...+. ....+- ..++.|+..+ .+ +
T Consensus 146 ~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~--------~~~~i~~~g~l~~Ll~lL~~~~~ 216 (528)
T 4b8j_A 146 ASGTS-ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK--------CRDLVLANGALLPLLAQLNEHTK 216 (528)
T ss_dssp HTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH--------HHHHHHHTTCHHHHHHTCCTTCC
T ss_pred hCCCH-HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh--------hHHHHHHCCcHHHHHHHHhcCCC
Confidence 98642 33333333 6899999999999999999999999999854321 111121 3677888888 44 8
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH-H
Q 002877 471 PNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA-E 549 (872)
Q Consensus 471 ~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~-~ 549 (872)
+.++..++++|.+++... +.........+++.++..+... +..++..++.+|+.+....+ ........ .
T Consensus 217 ~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g 286 (528)
T 4b8j_A 217 LSMLRNATWTLSNFCRGK------PQPSFEQTRPALPALARLIHSN---DEEVLTDACWALSYLSDGTN-DKIQAVIEAG 286 (528)
T ss_dssp HHHHHHHHHHHHHHHCSS------SCCCHHHHTTHHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSCH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCC------CCCcHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCH-HHHHHHHHcC
Confidence 999999999999999764 3334456678899999988743 46679999999999886543 22222222 3
Q ss_pred HHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH-HHHHHHHHHHHccC-ChhHHH
Q 002877 550 LLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA-DQIMVLFLRVFACR-SSTVHE 627 (872)
Q Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~v~~ 627 (872)
++|.++..+.. ....++..++.+|++++..... .....+ ..+++.++.++.+. +..++.
T Consensus 287 ~v~~Lv~lL~~-------------~~~~v~~~a~~~L~nl~~~~~~------~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 347 (528)
T 4b8j_A 287 VCPRLVELLLH-------------PSPSVLIPALRTVGNIVTGDDA------QTQCIIDHQALPCLLSLLTQNLKKSIKK 347 (528)
T ss_dssp CHHHHHHHTTC-------------SCHHHHHHHHHHHHHHTTSCHH------HHHHHHTTTHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHcC-------------CChhHHHHHHHHHHHHHcCCHH------HHHHHHHhhhHHHHHHHHcCCCcHHHHH
Confidence 55666655542 1235778888898888642211 111112 25678888889888 899999
Q ss_pred HHHHHHHHHHHHhhhHHHhhhH-HHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccH--HHHHHHHHHHhcCC
Q 002877 628 EAMLAIGALAYATGPEFAKYMP-EFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFC--DGIMSLLLNALSNS 704 (872)
Q Consensus 628 ~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~ 704 (872)
.|+.+++.++..........+. .++|.|...+.+. +..++..|+++|+.++.........++ ..+++.|+..|.++
T Consensus 348 ~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 426 (528)
T 4b8j_A 348 EACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 426 (528)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 9999999998654443333332 6788888888765 567999999999999987433334444 35788999999887
Q ss_pred CCCCCCchhHHHHHHHHHHhhc
Q 002877 705 QLNRSVKPPILSCFGDIALAIG 726 (872)
Q Consensus 705 ~~~~~~~~~~~~~l~~l~~~~~ 726 (872)
+..++..++.+++.++...+
T Consensus 427 --d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 427 --DIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999987553
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.64 E-value=4.4e-13 Score=152.93 Aligned_cols=490 Identities=10% Similarity=0.037 Sum_probs=314.9
Q ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH
Q 002877 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFAL 210 (872)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 210 (872)
..++.|...++++ ++.+|..++.+|+.++........ .......++.+.+.+.+. .+.++|..++.+|..+...-
T Consensus 14 g~i~~Lv~lL~~~--~~~vr~~A~~~L~~La~~~~~~~~-i~~~~~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~- 88 (644)
T 2z6h_A 14 RAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHA-IMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHR- 88 (644)
T ss_dssp TTHHHHHHHHTCS--CHHHHHHHHHHHHHHHTSTTHHHH-HTTCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSH-
T ss_pred chHHHHHHHHcCC--CHHHHHHHHHHHHHHHCCChhHHH-HHhccChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCh-
Confidence 3577888888888 899999999999999986521100 011235777888888763 47899999999998754211
Q ss_pred hhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhH-HHHHHHHHHHhcCCChHHHHHHHHhHhHH
Q 002877 211 TNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYM-QTLFELTSNAVKGDEEAVALQAVEFWSSI 289 (872)
Q Consensus 211 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~al~~l~~l 289 (872)
.. .......-.++.+.++++++++.++..++.+|..++........... ...++.++..+.+.+..++..++..+..+
T Consensus 89 ~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 89 EG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HH-HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 10 00000112677888888889999999999999999876543333332 25677888888888888888877777777
Q ss_pred hHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC--Ccch-
Q 002877 290 CDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG--DEVV- 366 (872)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~--~~~~- 366 (872)
+....+.. ..+.. ...++.++..+...+ ....+..+..+|..++.... ..+.
T Consensus 168 a~~~~~~~--------------~~i~~---~g~v~~Lv~lL~~~~--------~~~~~~~a~~~L~nLs~~~~~~~~l~~ 222 (644)
T 2z6h_A 168 AYGNQESK--------------LIILA---SGGPQALVNIMRTYT--------YEKLLWTTSRVLKVLSVCSSNKPAIVE 222 (644)
T ss_dssp HTTCHHHH--------------HHHHH---TTHHHHHHHHHTTCC--------CHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HhcCcHHH--------------HHHHH---cCChHHHHHHHHcCC--------hHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 64211000 01111 145677777765321 03456667777777764221 1111
Q ss_pred hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCC
Q 002877 367 PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPAT 446 (872)
Q Consensus 367 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (872)
...++.+...+.+.+...++.++.+|+.++.... +. .....+++.+++.+.++++.+|..++++|+.++..-..
T Consensus 223 ~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~-~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~--- 296 (644)
T 2z6h_A 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK--- 296 (644)
T ss_dssp TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT-TC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch-hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH---
Confidence 1356777778888888899999999999987643 21 12447899999999999999999999999999753221
Q ss_pred CccccCccc-HHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCC--chh-h-HHHHHHHHHHhhccCCC
Q 002877 447 GFSVISPEN-LQRILTVLLESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSL--LSP-Y-LTSIIAELLRAADRTDV 518 (872)
Q Consensus 447 ~~~~~~~~~-~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~--l~~-~-~~~il~~l~~~l~~~~~ 518 (872)
..... -...++.|+..+.+ .+.++..|+.++++++... +.. ... . -...++.+...+...
T Consensus 297 ----~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~------~~~~~~q~~v~~~~~l~~L~~lL~~~-- 364 (644)
T 2z6h_A 297 ----NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH------QEAEMAQNAVRLHYGLPVVVKLLHPP-- 364 (644)
T ss_dssp ----HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS------TTHHHHHHHHHHTTHHHHHHHTTSTT--
T ss_pred ----HHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC------chHHHHHHHHHHccChHHHHHHhCcc--
Confidence 00001 12357777777765 3799999999999997432 110 011 1 124678888888743
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHHHHHHHHHHHhhhhc------C---cchhhhHHHHHHHHHHHHHH
Q 002877 519 GGSKLRSAAYETLNEVVRCSNITETSQIIA-ELLPAIMGRLGQTLELQIV------S---SDDREKQGDLQASLCGVLQV 588 (872)
Q Consensus 519 ~~~~vr~~a~~al~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~------~---~~~~~~~~~~~~~~~~~l~~ 588 (872)
.+..++..+.++++.+..... ......+ .++|.+++.+......... + ..+.....+++..++.+|..
T Consensus 365 ~~~~v~~~a~~~L~nLa~~~~--~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~ 442 (644)
T 2z6h_A 365 SHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHccCHH--HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHH
Confidence 234679999999999986533 2233332 5778888777653211000 0 00011234577778888887
Q ss_pred HHHHcCCCccchhhchhhH--HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhH--HHHHHHHhhhcccch
Q 002877 589 IIQKFSSTDATKSFILQTA--DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMP--EFYQYLQMGLQNSEE 664 (872)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~ 664 (872)
++..- .....+ ...++.++.++.+.+..++..+..++..++.. ......+. ..++.|...+.+ .+
T Consensus 443 La~~~--------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~-~~ 511 (644)
T 2z6h_A 443 LARDV--------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHS-RN 511 (644)
T ss_dssp HTTSH--------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTC-SC
T ss_pred HhcCH--------HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcC-CC
Confidence 75321 111111 24677888888888899999999999888642 22222222 346677776665 46
Q ss_pred HhHHHHHHHHHHHHHHHh
Q 002877 665 YQVCAITVGVVGDVCRAL 682 (872)
Q Consensus 665 ~~v~~~a~~~l~~l~~~~ 682 (872)
++++..|.++|+.++...
T Consensus 512 ~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 512 EGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 779999999999986544
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.64 E-value=1.5e-12 Score=146.63 Aligned_cols=472 Identities=11% Similarity=0.027 Sum_probs=288.7
Q ss_pred CChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCch
Q 002877 51 KPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWP 130 (872)
Q Consensus 51 ~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~ 130 (872)
.+...|+++-..+.+.... .++..--+-+.+.+-|.++++.+|..+..+++.|...+ ..+
T Consensus 82 ~~~~~Krl~Yl~~~~~~~~----------------~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~----~~~ 141 (618)
T 1w63_A 82 QKFTDKRIGYLGAMLLLDE----------------RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSE----MCR 141 (618)
T ss_dssp SSHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH----HHH
T ss_pred CchHHHHHHHHHHHHHhCC----------------CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH----HHH
Confidence 4567777777777665532 35555567778888999999999999999999997432 346
Q ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH
Q 002877 131 ELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFAL 210 (872)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 210 (872)
.+++.+...+.++ ++.+|..|+.++..++... |+.+ +.+++.+...+.| .++.|+.+|+.+|..+...-.
T Consensus 142 ~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D--~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 142 DLAGEVEKLLKTS--NSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNE--KNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp HHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTC--CCHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCC--CCHhHHHHHHHHHHHHHHhCh
Confidence 7899999999998 9999999999999999865 4443 3566777778887 788999999999998653211
Q ss_pred hhhhh-hhHHHHHHHHHHHhhc-----------CCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh---cCCC
Q 002877 211 TNFQN-EMERNYIMKVVCETAK-----------SKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAV---KGDE 275 (872)
Q Consensus 211 ~~~~~-~~~~~~ll~~l~~~~~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~---~~~~ 275 (872)
..... ....+.+++.+.+... ..++-.+..+++++..+....+..- ..+..++..++... ++.+
T Consensus 212 ~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 212 DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-EAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-HTTHHHHHHHHHTSCCSSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHhccccccchH
Confidence 10000 0001223333433321 2467777888888888776543321 22222333232221 1223
Q ss_pred hHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHH
Q 002877 276 EAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLG 355 (872)
Q Consensus 276 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~ 355 (872)
..+...|+.++..+... .... ...++.+...+...+ .++|..|..++.
T Consensus 291 ~aV~~ea~~~i~~l~~~-------------------~~l~----~~a~~~L~~~L~~~d---------~~vr~~aL~~L~ 338 (618)
T 1w63_A 291 NAILYETVLTIMDIKSE-------------------SGLR----VLAINILGRFLLNND---------KNIRYVALTSLL 338 (618)
T ss_dssp HHHHHHHHHHHHHSCCC-------------------HHHH----HHHHHHHHHHHTCSS---------TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-------------------HHHH----HHHHHHHHHHHhCCC---------CchHHHHHHHHH
Confidence 45666666655443221 1111 123344444443211 578999999999
Q ss_pred HHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002877 356 LVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLS 435 (872)
Q Consensus 356 ~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~ 435 (872)
.++...|+.+ ....+.+..++.+++...|..++.++..++... .+ ..+++.+...+.+.++.+|..+..+++
T Consensus 339 ~i~~~~p~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~---nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~ 410 (618)
T 1w63_A 339 KTVQTDHNAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN---NI----RGMMKELLYFLDSCEPEFKADCASGIF 410 (618)
T ss_dssp HHHHHHHHHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS---ST----HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHhhCHHHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc---cH----HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9998765433 334566777788999999999999999998743 22 345566666677788999999999999
Q ss_pred HHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhc
Q 002877 436 RIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAAD 514 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~ 514 (872)
+++..++. .....++.++..+.+ ...++..++..+..+.... + .+. ..++..+...+.
T Consensus 411 ~la~k~~~-----------~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~------p-~l~---~~~v~~L~~~l~ 469 (618)
T 1w63_A 411 LAAEKYAP-----------SKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS------V-EMH---AYTVQRLYKAIL 469 (618)
T ss_dssp HHHHSSCC-----------CHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS------C-STH---HHHHHHHHHHHH
T ss_pred HHHHHhCc-----------cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC------h-hHH---HHHHHHHHHHHh
Confidence 99986643 345566667766665 4445555666777777664 3 222 234444555544
Q ss_pred cCCCcchhHHHHHHHHHHHHHhcCCCcc-------cHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHH
Q 002877 515 RTDVGGSKLRSAAYETLNEVVRCSNITE-------TSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQ 587 (872)
Q Consensus 515 ~~~~~~~~vr~~a~~al~~l~~~~~~~~-------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 587 (872)
... ....+...+++++|....... .. ....-..+++.+...+... .....+|..++.++.
T Consensus 470 ~~~-~~~~~~~~~~wilGEy~~~i~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~~vr~~~lta~~ 536 (618)
T 1w63_A 470 GDY-SQQPLVQVAAWCIGEYGDLLV-SGQCEEEEPIQVTEDEVLDILESVLISN-----------MSTSVTRGYALTAIM 536 (618)
T ss_dssp HCC-SCSHHHHHHHHHHHHHHHHHT-TCCCSSSCCCCCCHHHHHHHHHHHHHST-----------TCCHHHHHHHHHHHH
T ss_pred ccc-ccHHHHHHHHHHHhhhHHHhc-ccccccccccCCCHHHHHHHHHHHHhcc-----------CCCHHHHHHHHHHHH
Confidence 211 112235578999998876432 10 0000011222222222110 112346666677776
Q ss_pred HHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHH
Q 002877 588 VIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALA 637 (872)
Q Consensus 588 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 637 (872)
.+....++ .. +.+...+-....+.+.++|+.|...+.-+.
T Consensus 537 Kl~~~~~~-------~~---~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 537 KLSTRFTC-------TV---NRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHTTCSS-------CH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcc-------hH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 66554433 12 233333334456668899999998777664
No 43
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.61 E-value=2.8e-09 Score=124.39 Aligned_cols=649 Identities=11% Similarity=0.083 Sum_probs=370.0
Q ss_pred CHHHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHH
Q 002877 16 DANIRNEAEANLRQLQQQ----NLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKS 91 (872)
Q Consensus 16 ~~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~ 91 (872)
++.++++..+.+..+..+ ++|+++..+++.+.. ++..+..+..+|+.....-..... ..++.+-+.
T Consensus 125 ~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~EEV~d~~~-------~~l~~~r~~ 194 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLSEEVFDFSS-------GQITQVKAK 194 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHTTSHH-------HHBCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHhccc-------ccccHHHHH
Confidence 577888888888876654 567788888887753 355566666666654321000000 012222222
Q ss_pred HHHH-----------HHHHhhcC-CChhHhhHHHHHHHHHHHhhcCCCCc--------hHHHHHH-HHhhccCCccHHHH
Q 002877 92 QVKD-----------LLLRTLAS-PVPEARHTSAQVIAKIASIEIPQKQW--------PELIRSL-LNNMTQQDSLAALK 150 (872)
Q Consensus 92 ~i~~-----------~Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~~--------~~ll~~l-~~~l~~~~~~~~~r 150 (872)
.+++ .+.+.|.. .++.+...+-++++..+ .| +++++.+ ...+. ++..|
T Consensus 195 ~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~-------sWI~i~~i~~~~ll~~L~~~~L~----~~~~r 263 (1073)
T 3gjx_A 195 HLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFL-------NWIPLGYIFETKLISTLIYKFLN----VPMFR 263 (1073)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-------TTSCTHHHHSSSHHHHHHHHTSS----SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-------HhcCHHHhccchHHHHHHHHhcC----ChHHH
Confidence 2222 22233332 35555555555555543 34 3567766 35553 56789
Q ss_pred HHHHHHHHHhhhccCccccchhhHHHHHHHHHh----cccC-----------CCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 002877 151 QATLETLGYVCEEISHQDLVQDEVNAVLTAVVQ----GMNL-----------AEHSAEVRLAATRALYNALDFALTNFQN 215 (872)
Q Consensus 151 ~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~----~l~~-----------~~~~~~vr~~al~~l~~~~~~~~~~~~~ 215 (872)
..|+.||..++..-.++ + ...+..+++.++. .+.. .+.+.+.-..-.+.+..+.+....-+..
T Consensus 264 ~aA~dcL~eIv~k~~~~-~-~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~ 341 (1073)
T 3gjx_A 264 NVSLKCLTEIAGVSVSQ-Y-EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEK 341 (1073)
T ss_dssp HHHHHHHHHHHHSCSGG-G-HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccc-h-HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999988752122 2 2333334433322 1111 0011222223333333332211111111
Q ss_pred h-hHHHH---HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh-------------------------hhHHhHHHHHHH
Q 002877 216 E-MERNY---IMKVVCETAKSKEVEIRQAAFECLVSIASTYYE-------------------------VLEPYMQTLFEL 266 (872)
Q Consensus 216 ~-~~~~~---ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------------------------~~~~~l~~l~~~ 266 (872)
. ..+.. .++.+..+...++.++.+.+++.|..+....+. .+.+++..+...
T Consensus 342 ~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~v 421 (1073)
T 3gjx_A 342 RLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLL 421 (1073)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 1 11222 344456677778999999999999888765431 134445555555
Q ss_pred HHHHhcCCCh---------H-HHH-----H---HHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHh-HHhhHHHHH
Q 002877 267 TSNAVKGDEE---------A-VAL-----Q---AVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKA-RSSLVPMLL 327 (872)
Q Consensus 267 ~~~~~~~~~~---------~-~~~-----~---al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~ 327 (872)
++.-+..+++ + +|. . ....+...+. ++... -......++
T Consensus 422 lI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~----------------------~lt~l~~~~~~~i~~ 479 (1073)
T 3gjx_A 422 MVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLV----------------------YLTHLDYVDTEIIMT 479 (1073)
T ss_dssp HHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHH----------------------HHHHHCHHHHHHHHH
T ss_pred HHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHH----------------------HHhcCCHHHHHHHHH
Confidence 5555442211 0 000 0 0000000000 00000 012223333
Q ss_pred HHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC----cchhchHHHHHhhccCC---C--cchHHHHHHHHHHhhcC
Q 002877 328 ETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD----EVVPLVMPFVEANIVKS---D--WRCREAATYAFGSVLEG 398 (872)
Q Consensus 328 ~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~---~--~~~r~aal~~l~~i~~~ 398 (872)
..+...-.. + +-+|..+.++.-+++.++..... .++|.+++.+......+ + ...+-..++.+|...+.
T Consensus 480 ~~l~~~~~~-~--~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 480 KKLQNQVNG-T--EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHTS-C--CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhcC-C--CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 333321111 1 12499999999999999866542 56777788777665433 1 22333445678877665
Q ss_pred CCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCC-ccccCcccHHHHHHHHHHHhhc-ChHHHHH
Q 002877 399 PTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATG-FSVISPENLQRILTVLLESIKD-APNVAEK 476 (872)
Q Consensus 399 ~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~ 476 (872)
.. .-..+++.++..+++.+.++++.|+.+|+.++..+++.++....+ .+....+|+..++..+.....+ .+.-...
T Consensus 557 l~--~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 557 LR--AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HH--HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HH--hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 42 235588999999999999999999999999999999887752100 0112346888888888877777 7777777
Q ss_pred HHHHHHHHHHhhccCCCCCCC--chhhHHHHHHHHHHhhccC------------CCcchhHHHHHHHHHHHHHhcCCCcc
Q 002877 477 VCGAIYYLAQGYEDAGPSSSL--LSPYLTSIIAELLRAADRT------------DVGGSKLRSAAYETLNEVVRCSNITE 542 (872)
Q Consensus 477 a~~al~~l~~~~~~~~~~~~~--l~~~~~~il~~l~~~l~~~------------~~~~~~vr~~a~~al~~l~~~~~~~~ 542 (872)
-..+++.++... ++. ...++..+++......+.. |.+..+--...+++...++...| ..
T Consensus 635 lyeav~~vi~~~------p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g-~~ 707 (1073)
T 3gjx_A 635 FYEAVGYMIGAQ------TDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVG-HP 707 (1073)
T ss_dssp HHHHHHHHHTTC------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHC-GG
T ss_pred HHHHHHHHHHhC------CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcc-hh
Confidence 788888888876 443 2456666666555443311 10001223466677777888888 88
Q ss_pred cHHHHHHHHHHHHHHHHH---HHhhhhcCcc---hhhh----HHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHH
Q 002877 543 TSQIIAELLPAIMGRLGQ---TLELQIVSSD---DREK----QGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMV 612 (872)
Q Consensus 543 ~~~~~~~l~~~l~~~l~~---~~~~~~~~~~---~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 612 (872)
+.+++..+++.+++..+. .+...+.... .+.. .-.++..++..+...+..-.+ .......+++++++
T Consensus 708 f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~---~~~v~~~~i~pl~~ 784 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSND---PQMVAENFVPPLLD 784 (1073)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSC---HHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHhHHHHHH
Confidence 999999999988876543 2322221100 0100 112334444455544433221 11124455678888
Q ss_pred HHHHHHccCChhHHHH-HHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhc----c--cchHhHHHHHHHHHHHHHHHhcCC
Q 002877 613 LFLRVFACRSSTVHEE-AMLAIGALAYATGPEFAKYMPEFYQYLQMGLQ----N--SEEYQVCAITVGVVGDVCRALDDK 685 (872)
Q Consensus 613 ~l~~~l~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~----~--~~~~~v~~~a~~~l~~l~~~~~~~ 685 (872)
.++.-..+..+..|+. .+.+++.++...+..+.+.++.++..++.+.- + .+.|+.|..-..++..+...+...
T Consensus 785 ~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~ 864 (1073)
T 3gjx_A 785 AVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPA 864 (1073)
T ss_dssp HTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHH
Confidence 8777776655555543 47778889998898888888888887654432 1 356889999999999999987654
Q ss_pred ccc----cHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc
Q 002877 686 VLP----FCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG 726 (872)
Q Consensus 686 ~~~----~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 726 (872)
+.. .+..++..++=.+..+ ++++-...+..+.++.....
T Consensus 865 l~~l~~~~~~~~i~~i~wa~kh~--~r~i~~~~l~~~~~ll~~~~ 907 (1073)
T 3gjx_A 865 FLAIPPAQFKLVLDSIIWAFKHT--MRNVADTGLQILFTLLQNVA 907 (1073)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHhh
Confidence 443 3345677777777777 78888888888888776543
No 44
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.5e-14 Score=139.81 Aligned_cols=206 Identities=16% Similarity=0.205 Sum_probs=167.1
Q ss_pred HHHhhccCCCcchHHHHHHHHHH-hhcCCCccch--hHhHHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhcc-CCCC
Q 002877 372 FVEANIVKSDWRCREAATYAFGS-VLEGPTIDKL--APLVHAGFDFLLNAM-RDENNHVKDTTAWTLSRIFELLH-CPAT 446 (872)
Q Consensus 372 ~l~~~l~~~~~~~r~aal~~l~~-i~~~~~~~~~--~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~-~~~~ 446 (872)
-+.+.+.+.+|+.|.+++..++. +++++. +.. ...+.+++..+.+.+ +|.|+.||..|+.+++.++..+. .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~-~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~--- 95 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTK-KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP--- 95 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCC-CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc---
Confidence 45566789999999999999999 987653 433 233457788889999 79999999999999999999887 5
Q ss_pred CccccCc-ccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHH
Q 002877 447 GFSVISP-ENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLR 524 (872)
Q Consensus 447 ~~~~~~~-~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr 524 (872)
... .|...+++.++..+.| .+.|+.++..++..+++.+. +....+|++.+++.++..+++ .+..+|
T Consensus 96 ----~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-----~~~~~~~l~~ll~~l~~~l~~---k~~~vk 163 (249)
T 2qk1_A 96 ----GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-----PLASSGRNEDMLKDILEHMKH---KTPQIR 163 (249)
T ss_dssp ----TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-----TTCTTCTTHHHHHHHHHHTTC---SSHHHH
T ss_pred ----cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-----ccccCCcHHHHHHHHHHHHcC---CChHHH
Confidence 466 8999999999999999 89999999999999999873 333334588999999998873 346778
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhch
Q 002877 525 SAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFIL 604 (872)
Q Consensus 525 ~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 604 (872)
..++.+|..++...+ .. +. .+.
T Consensus 164 ~~al~~l~~~~~~~~-~~---------------------------------------------------~~------~l~ 185 (249)
T 2qk1_A 164 MECTQLFNASMKEEK-DG---------------------------------------------------YS------TLQ 185 (249)
T ss_dssp HHHHHHHHHHHHHCC-SC---------------------------------------------------SH------HHH
T ss_pred HHHHHHHHHHHHHcC-Cc---------------------------------------------------ch------hHH
Confidence 888888888877665 10 01 456
Q ss_pred hhH-HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh-HHHhhhHHH
Q 002877 605 QTA-DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP-EFAKYMPEF 651 (872)
Q Consensus 605 ~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~l~~i 651 (872)
+|+ +.+++.+..++++++..+|..|+.+++.++...|+ .+.||++.+
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 677 88999999999999999999999999999999986 477776653
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.60 E-value=8.7e-13 Score=147.72 Aligned_cols=463 Identities=14% Similarity=0.107 Sum_probs=292.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHH
Q 002877 7 QFLLAAQSADANIRNEAEANLRQLQQQN--------LPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDL 78 (872)
Q Consensus 7 ~~l~~~~s~~~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~ 78 (872)
.++.-+.++|+.+|..|...|..+...+ .++.+..|...|.+. .++.+|..|+..|++..... . .
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~-~-----~ 93 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHR-E-----G 93 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSH-H-----H
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCc-h-----h
Confidence 3344445789999999999998876531 146788888888763 47899999999999865321 0 0
Q ss_pred HhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCC-C--chHHHHHHHHhhccCCccHHHHHHHHH
Q 002877 79 AKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQK-Q--WPELIRSLLNNMTQQDSLAALKQATLE 155 (872)
Q Consensus 79 ~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~-~--~~~ll~~l~~~l~~~~~~~~~r~~al~ 155 (872)
.. .+ .....-+.|++.+.++++.++..++.++..++...-... . -...++.|.+.+.++ ++..+..+..
T Consensus 94 ~~---~i---~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~ 165 (529)
T 1jdh_A 94 LL---AI---FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTD 165 (529)
T ss_dssp HH---HH---HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHH
T ss_pred HH---HH---HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHH
Confidence 00 00 011345578888999999999999999999987641100 0 246789999999988 8888888888
Q ss_pred HHHHhhhccCccccchh-hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCc
Q 002877 156 TLGYVCEEISHQDLVQD-EVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKE 234 (872)
Q Consensus 156 ~l~~l~~~~~~~~l~~~-~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 234 (872)
+|..++... ++.- .. .-...++.+...+.+. ....++..+..+|..+... ..........-.++.+...+.+++
T Consensus 166 ~L~~la~~~-~~~~-~~i~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~~~~L~~ll~~~~ 240 (529)
T 1jdh_A 166 CLQILAYGN-QESK-LIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPS 240 (529)
T ss_dssp HHHHHHTTC-HHHH-HHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTTTSSC
T ss_pred HHHHHHhCC-HHHH-HHHHHCCCHHHHHHHHHhC-ChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHhCCC
Confidence 888777532 1110 00 1123466666667654 3567777888887775421 100000001125677788888889
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHH
Q 002877 235 VEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHF 314 (872)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (872)
++++..++.++..+....+... ....+++.++..+.+.+++++..+...+..++..... .
T Consensus 241 ~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~------------------~ 300 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK------------------N 300 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH------------------H
T ss_pred hHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH------------------H
Confidence 9999999999999886543321 2235677777777888999999999988888764221 1
Q ss_pred HHHhH-HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC------cch-hchHHHHHhhccCCC-cchH
Q 002877 315 IEKAR-SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD------EVV-PLVMPFVEANIVKSD-WRCR 385 (872)
Q Consensus 315 ~~~~l-~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~------~~~-~~l~~~l~~~l~~~~-~~~r 385 (872)
.+... ...++.++..+...++ .+.++..+..+|..++...++ .+. ...++.+...+.+++ |..|
T Consensus 301 ~~~~~~~~~v~~L~~ll~~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~ 373 (529)
T 1jdh_A 301 KMMVCQVGGIEALVRTVLRAGD-------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred HHHHHHcCChHHHHHHHHccCC-------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHH
Confidence 11111 1356777777754321 157888889999888654332 111 134677777787765 7999
Q ss_pred HHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHH--HHhh-------------ccCCCCCcc
Q 002877 386 EAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSR--IFEL-------------LHCPATGFS 449 (872)
Q Consensus 386 ~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~-------------~~~~~~~~~ 449 (872)
..++.+++.++.+. ........ .++|.+++.+.++++.+|..++|++++ +... +.. .
T Consensus 374 ~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~-----L 446 (529)
T 1jdh_A 374 KATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI-----L 446 (529)
T ss_dssp HHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHH-----H
Confidence 99999999998753 33333333 788999999999999999999988776 1100 000 0
Q ss_pred ccCccc---H--HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH--HHHHHHHHHhhccCCCcch
Q 002877 450 VISPEN---L--QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL--TSIIAELLRAADRTDVGGS 521 (872)
Q Consensus 450 ~~~~~~---~--~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~ 521 (872)
....+. + ...++.++..+.+ ++.++..+++++.+++..- .....+ ...++.+...+.. ++.
T Consensus 447 ~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~--------~~~~~i~~~~~~~~L~~l~~~---~~~ 515 (529)
T 1jdh_A 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------EAAEAIEAEGATAPLTELLHS---RNE 515 (529)
T ss_dssp TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--------HHHHHHHHTTCHHHHHHGGGC---SSH
T ss_pred hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--------HHHHHHHHcCChHHHHHHhcC---CCH
Confidence 000000 0 1245677788888 8999999999999886321 001111 1345666666653 346
Q ss_pred hHHHHHHHHHHHH
Q 002877 522 KLRSAAYETLNEV 534 (872)
Q Consensus 522 ~vr~~a~~al~~l 534 (872)
.++..+..++..+
T Consensus 516 ~v~~~a~~aL~~l 528 (529)
T 1jdh_A 516 GVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7788898888765
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.60 E-value=3.2e-13 Score=151.32 Aligned_cols=495 Identities=12% Similarity=0.069 Sum_probs=301.6
Q ss_pred HHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCC---CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccc
Q 002877 92 QVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQK---QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQD 168 (872)
Q Consensus 92 ~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~---~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 168 (872)
..-+.|.+.|.++++.+|..++.++..++...-... .-++.++.+++.+.+++ ++..+..++.+|..++..- +.
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~~--~~ 93 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHR--EG 93 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSH--HH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCc--hh
Confidence 345677888889999999999999999986542100 12467888888886431 6788999999999887642 11
Q ss_pred cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 002877 169 LVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSI 248 (872)
Q Consensus 169 l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l 248 (872)
-..-.-...+|.+...+.+ +++.++..++.+|.++...-... .......-.++.+.+.+.+++++++..++.++..+
T Consensus 94 ~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTH-HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcch-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1011123578888888988 67899999999999976431111 00000112677788888888999999999999887
Q ss_pred HHhhhhhhHHhHH-HHHHHHHHHhcC-CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH-HhhHHH
Q 002877 249 ASTYYEVLEPYMQ-TLFELTSNAVKG-DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKAR-SSLVPM 325 (872)
Q Consensus 249 ~~~~~~~~~~~l~-~l~~~~~~~~~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~ 325 (872)
....++.-..... ..++.++..+++ ..+..+..+...+..++.... ...... ...++.
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-------------------~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-------------------NKPAIVEAGGMQA 231 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-------------------HHHHHHHTTHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc-------------------cHHHHHHCCCHHH
Confidence 7533222111111 223333333443 334455566666666664311 111111 246666
Q ss_pred HHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC-CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccch
Q 002877 326 LLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG-DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKL 404 (872)
Q Consensus 326 l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~ 404 (872)
+...+... ...++..+..++..++...+ ......+++.+.+.+.++++..|..++.+++.++... ++..
T Consensus 232 L~~ll~~~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~ 301 (529)
T 1jdh_A 232 LGLHLTDP---------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNK 301 (529)
T ss_dssp HHTTTTSS---------CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHH
T ss_pred HHHHHhCC---------ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 66655421 14678888899999887654 2334466788888888899999999999999998753 1222
Q ss_pred hHhHH-hHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhccCCCCCccccCc-c-cHHHHHHHHHHHhhc-C-hHHHHHH
Q 002877 405 APLVH-AGFDFLLNAMRD--ENNHVKDTTAWTLSRIFELLHCPATGFSVISP-E-NLQRILTVLLESIKD-A-PNVAEKV 477 (872)
Q Consensus 405 ~~~l~-~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~-~~~~~l~~l~~~l~d-~-~~v~~~a 477 (872)
..... ..++.+++.+.+ .++.++..++++|++++...+. ..... . .-...++.|...+.+ + +.++..+
T Consensus 302 ~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~-----~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-----AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-----HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 22232 567888888864 4489999999999999754322 00000 0 011346778888887 4 6899999
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhH-HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q 002877 478 CGAIYYLAQGYEDAGPSSSLLSPYL-TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMG 556 (872)
Q Consensus 478 ~~al~~l~~~~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~ 556 (872)
++++.+++... ....... ..+++.++..+.. .+..+|..+.++++...-..+ .
T Consensus 377 ~~~l~nl~~~~-------~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~l~n~~~~~~-~--------------- 430 (529)
T 1jdh_A 377 VGLIRNLALCP-------ANHAPLREQGAIPRLVQLLVR---AHQDTQRRTSMGGTQQQFVEG-V--------------- 430 (529)
T ss_dssp HHHHHHHTTSG-------GGHHHHHHTTHHHHHHHHHHH---HHHHHC-----------CBTT-B---------------
T ss_pred HHHHHHHhcCh-------hhhHHHHHcCCHHHHHHHHHH---HhHHHHHHHhcccCchhhhcc-c---------------
Confidence 99999998542 1112222 2567778877763 335567778777765221111 1
Q ss_pred HHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHH
Q 002877 557 RLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGAL 636 (872)
Q Consensus 557 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l 636 (872)
...+++..++.++..++..... ...+.. ...++.++.++.+.+..++..+..+++.+
T Consensus 431 -----------------~~~~i~~~~~~al~~L~~~~~~----~~~l~~--~~~v~~l~~ll~~~~~~v~~~a~~~l~~l 487 (529)
T 1jdh_A 431 -----------------RMEEIVEGCTGALHILARDVHN----RIVIRG--LNTIPLFVQLLYSPIENIQRVAAGVLCEL 487 (529)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTSHHH----HHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred -----------------cHHHHHHHHHHHHHHHhcCchH----HHHHhc--cCCccHHHHHHcCCchHHHHHHHHHHHHH
Confidence 1122333444455544321000 000111 13567788889998999999999999888
Q ss_pred HHHhhhHHHhhhH--HHHHHHHhhhcccchHhHHHHHHHHHHHH
Q 002877 637 AYATGPEFAKYMP--EFYQYLQMGLQNSEEYQVCAITVGVVGDV 678 (872)
Q Consensus 637 ~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 678 (872)
+.. +.....+. ..++.|...+.+ .+++++..|.+++..+
T Consensus 488 ~~~--~~~~~~i~~~~~~~~L~~l~~~-~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 488 AQD--KEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRM 528 (529)
T ss_dssp TTS--HHHHHHHHHTTCHHHHHHGGGC-SSHHHHHHHHHHHHHH
T ss_pred hcC--HHHHHHHHHcCChHHHHHHhcC-CCHHHHHHHHHHHHhc
Confidence 632 22222222 456777777665 4677999999998876
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.60 E-value=6.3e-12 Score=140.72 Aligned_cols=507 Identities=12% Similarity=0.056 Sum_probs=304.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 002877 191 SAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNA 270 (872)
Q Consensus 191 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 270 (872)
+...|..+++-+..+.. .+.+.. ..+..+.+.+++++...|+.+.-.+..+++..++.+ --+++.+...
T Consensus 51 ~~~~k~~~l~Kli~l~~-~G~d~s------~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kD 119 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFL-LGHDID------FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKND 119 (621)
T ss_dssp CHHHHHHHHHHHHHHHH-HSCCCC------SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCCCc------hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHh
Confidence 55666666665555432 222221 133445567888999999999999988877655433 3345666777
Q ss_pred hcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhH
Q 002877 271 VKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAG 350 (872)
Q Consensus 271 ~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a 350 (872)
++++++.++..|+.+++.+... .+.+.+.|.+.+.+...+ ....+|+.|
T Consensus 120 l~~~n~~ir~lALr~L~~i~~~------------------------e~~~~l~~~v~~~l~~~d-------~~~~VRK~A 168 (621)
T 2vgl_A 120 LASRNPTFMGLALHCIANVGSR------------------------EMAEAFAGEIPKILVAGD-------TMDSVKQSA 168 (621)
T ss_dssp HHSCCHHHHHHHHHHHHHHCCH------------------------HHHHHHTTHHHHHHHCSS-------SCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhccCCH------------------------HHHHHHHHHHHHHHhCCC-------CCHHHHHHH
Confidence 8899999999999999888552 133456666676663212 126899999
Q ss_pred HHHHHHHHhhcCCcch-hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCC--------
Q 002877 351 GTCLGLVARTVGDEVV-PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRD-------- 421 (872)
Q Consensus 351 ~~~l~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d-------- 421 (872)
+-++..+....|+.+. +.+++.+.+.+.++++.++.+|+.++..++... ++.+.+.++.++..+.+.+.+
T Consensus 169 ~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 247 (621)
T 2vgl_A 169 ALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN-PEEFKTSVSLAVSRLSRIVTSASTDLQDY 247 (621)
T ss_dssp HHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-HHHHTTHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred HHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHhCCCCCccch
Confidence 9999999997765443 278899999999999999999999999998644 233444555555555554422
Q ss_pred -----CcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc----------Ch--HHHHHHHHHHHHH
Q 002877 422 -----ENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD----------AP--NVAEKVCGAIYYL 484 (872)
Q Consensus 422 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d----------~~--~v~~~a~~al~~l 484 (872)
++|..+-.....++.++..- + ......+..+++.++..+.+ +. .|...|+.++..+
T Consensus 248 ~~~~~~~~w~qi~il~ll~~~~~~~-d------~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l 320 (621)
T 2vgl_A 248 TYYFVPAPWLSVKLLRLLQCYPPPE-D------PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHH 320 (621)
T ss_dssp EETTEESHHHHHHHHHHGGGSSSCS-S------HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-C------HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhc
Confidence 16777777777766554210 0 01122233344444443322 11 4444444444333
Q ss_pred HHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhh
Q 002877 485 AQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLEL 564 (872)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 564 (872)
. + -.++....++.+...+... +.++|-.++.++..++...+ .
T Consensus 321 ~---------~--~~~~~~~~~~~L~~~L~~~---~~niry~aL~~l~~l~~~~~-~----------------------- 362 (621)
T 2vgl_A 321 D---------S--EPNLLVRACNQLGQFLQHR---ETNLRYLALESMCTLASSEF-S----------------------- 362 (621)
T ss_dssp C---------C--CHHHHHHHHHHHHHHSSCS---CHHHHHHHHHHHHHHTTCTT-T-----------------------
T ss_pred C---------C--cHHHHHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhccC-c-----------------------
Confidence 1 0 1234445555555555422 24456666666665554433 0
Q ss_pred hhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHc-cCChhHHHHHHHHHHHHHHHhhhH
Q 002877 565 QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFA-CRSSTVHEEAMLAIGALAYATGPE 643 (872)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~ 643 (872)
.+.+......++.++. +++..+|..++..+..++.. ..
T Consensus 363 ---------------------------------------~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~N 401 (621)
T 2vgl_A 363 ---------------------------------------HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SN 401 (621)
T ss_dssp ---------------------------------------HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hh
Confidence 0112233455666777 88899999999998887642 22
Q ss_pred HHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 002877 644 FAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 644 ~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
+..++..|...+... +.+.+..++..++.++..+... ..+.+..+++.+... ...+...++..+.++..
T Consensus 402 ----v~~Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~k~~~~----~~~~v~~Ll~ll~~~--~~~v~~ev~~~l~~ii~ 470 (621)
T 2vgl_A 402 ----AQQIVAEMLSYLETA-DYSIREEIVLKVAILAEKYAVD----YTWYVDTILNLIRIA--GDYVSEEVWYRVIQIVI 470 (621)
T ss_dssp ----HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCSS----THHHHHHHHHHHHHH--GGGSCSHHHHHHHHHHG
T ss_pred ----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHHHhh--cccchHHHHHHHHHHHh
Confidence 445666666666544 4568999999999998877644 445556666666654 34467777777777766
Q ss_pred hhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhh--HHHHHHHHHHH
Q 002877 724 AIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPY--AQHLLQFIELI 801 (872)
Q Consensus 724 ~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~il~~l~~~ 801 (872)
..++ +..| ....+++.++. + ..+...+.+...+++-.+..... .++ ...++..+...
T Consensus 471 ~~~~-~~~~---~~~~l~~~l~~---~------------~~~~~li~~~~wilGEy~~~~~~--~~~~~p~~~l~~l~~~ 529 (621)
T 2vgl_A 471 NRDD-VQGY---AAKTVFEALQA---P------------ACHENLVKVGGYILGEFGNLIAG--DPRSSPLIQFNLLHSK 529 (621)
T ss_dssp GGCS-CHHH---HHHHHHHHHTS---S------------SCCHHHHHHHHHHHHHHTHHHHS--STTSCHHHHHHHHHHH
T ss_pred CChh-HHHH---HHHHHHHHHcC---c------------cchHHHHHHHHHHhcchHHHhcc--cCCCCHHHHHHHHHHH
Confidence 5443 3333 23334444331 1 11233333344444443332111 011 12344455443
Q ss_pred hcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhc--CCcHHHHHHHHHHHHHHH
Q 002877 802 FKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLR--SDDEQLKETAGWTQGMIN 867 (872)
Q Consensus 802 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~--~~~~~~~~~a~~~~~~~~ 867 (872)
+.. .+..+|..++.++..+....+.. .+.+..+++.+.. |.++++|+.|..-...+.
T Consensus 530 ~~~--~~~~v~~~~Lta~~Kl~~~~p~~-------~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 530 FHL--CSVPTRALLLSTYIKFVNLFPEV-------KATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HTT--SCHHHHHHHHHHHHHHHHHCGGG-------HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred hcc--CCHHHHHHHHHHHHHHHHHChHH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 333 57899999999999998766431 3456777776666 999999999996665553
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.58 E-value=1.2e-13 Score=152.32 Aligned_cols=403 Identities=14% Similarity=0.172 Sum_probs=259.3
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 370 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
++-+.+.+++.+...+..|+..+..+...-....+...+. .++|.+++.|+ ++++.++..|+|+|++++....+
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e---- 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE---- 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH----
Confidence 5566677788888888889888888765432223444455 78999999996 55689999999999999854332
Q ss_pred ccccCcccHH-HHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh--HHHHHHHHHHhhccCCCc--ch
Q 002877 448 FSVISPENLQ-RILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY--LTSIIAELLRAADRTDVG--GS 521 (872)
Q Consensus 448 ~~~~~~~~~~-~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~--~~~il~~l~~~l~~~~~~--~~ 521 (872)
.....++ ..++.|+..+.+ ++.+++.|+++|++++... ...... -...++.++..+...+.. ..
T Consensus 135 ---~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~-------~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 135 ---QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG-------SAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp ---HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred ---HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-------HHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 1111121 368889999988 9999999999999998642 111111 124567778887754422 12
Q ss_pred hHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchh
Q 002877 522 KLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKS 601 (872)
Q Consensus 522 ~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 601 (872)
.++..+.+++..+...............++|.+...+.. ...+++..+++++..+...-..
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-------------~~~~v~~~A~~aL~~L~~~~~~------ 265 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-------------NDPEVLADSCWAISYLTDGPNE------ 265 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC-------------SCHHHHHHHHHHHHHHTSSCHH------
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc-------------CCHHHHHHHHHHHHHHhhchhh------
Confidence 346678888888887543133345556777777765542 1235777888888887532111
Q ss_pred hchhh-HHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHHH
Q 002877 602 FILQT-ADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDVC 679 (872)
Q Consensus 602 ~~~~~-~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 679 (872)
..... -..+++.|+.++.+.+..++..++.+++.++..........+ ...++.+...+.+. +..++..|+++|+.++
T Consensus 266 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~ 344 (510)
T 3ul1_B 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNIT 344 (510)
T ss_dssp HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHT
T ss_pred hHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 11111 124677888899999999999999999998754433222222 24566777777654 4579999999999997
Q ss_pred HHhcCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhH--HHHHHHHHHHHHhccccCCCchH
Q 002877 680 RALDDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYV--PHALQMMQEAAKACAQLDMEDEE 756 (872)
Q Consensus 680 ~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~~~~~~~~~~~d~~ 756 (872)
........... ..+++.++..+.+. +..+|..++.++++++.........++ ..+++.|...+... |
T Consensus 345 a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~------d-- 414 (510)
T 3ul1_B 345 AGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK------D-- 414 (510)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS------C--
T ss_pred cCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC------C--
Confidence 54332222112 25788999999888 788999999999999875433222222 24556666654421 1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccchh-hhhhhhhhHHH--HHHHHHHHhcCCCCCHhHHHHHHHHHHHHH
Q 002877 757 LIDYGNQLRSSIFEAYSGILQGFKSA-RAEVMMPYAQH--LLQFIELIFKDNHRDENVTKAAVAVMGDLA 823 (872)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~--il~~l~~~~~~~~~~~~~~~~a~~~l~~l~ 823 (872)
..++..++.++..++..-... ....+...+.. .++.|..+... .++++++.|..+|....
T Consensus 415 -----~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~--~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 415 -----TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH--ENESVYKASLNLIEKYF 477 (510)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHC
Confidence 246677777777776643221 11223233322 45566665443 67899999998887643
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.56 E-value=2.8e-13 Score=150.33 Aligned_cols=403 Identities=14% Similarity=0.174 Sum_probs=258.9
Q ss_pred hHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCC
Q 002877 369 VMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPAT 446 (872)
Q Consensus 369 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~ 446 (872)
.++.+.+.+.+++...+..|+..+..+...-....+...+. .++|.+++.|. +.++.++..|+|+|+.++.....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~--- 153 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE--- 153 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH---
Confidence 35566677788888888888888887664332233444444 88999999995 56799999999999999864432
Q ss_pred CccccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh--HHHHHHHHHHhhccCCCc--c
Q 002877 447 GFSVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY--LTSIIAELLRAADRTDVG--G 520 (872)
Q Consensus 447 ~~~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~--~~~il~~l~~~l~~~~~~--~ 520 (872)
.....+ ...++.|+..+.+ ++.++..|+++|++++... ...... -...++.++..+...+.. .
T Consensus 154 ----~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-------~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~ 222 (529)
T 3tpo_A 154 ----QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG-------SAFRDLVIKHGAIDPLLALLAVPDLSTLA 222 (529)
T ss_dssp ----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHTTCHHHHHHTTCSSCGGGSC
T ss_pred ----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC-------HHHHHHHHHcCCcHHHHHHHhccchhHhH
Confidence 111111 2467889998888 9999999999999998542 111111 124567788888754422 1
Q ss_pred hhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccch
Q 002877 521 SKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATK 600 (872)
Q Consensus 521 ~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 600 (872)
..+...+.+++..+...............++|.+...+.. ...+++..++++|.++...-..
T Consensus 223 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-------------~~~~v~~~a~~aL~~l~~~~~~----- 284 (529)
T 3tpo_A 223 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-------------NDPEVLADSCWAISYLTDGPNE----- 284 (529)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS-------------SCHHHHHHHHHHHHHHHSSCHH-----
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC-------------CcHHHHHHHHHHHHHhhhhhhh-----
Confidence 2346678888888887543123345556777777765542 1235677888888887632211
Q ss_pred hhchhh-HHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHH
Q 002877 601 SFILQT-ADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDV 678 (872)
Q Consensus 601 ~~~~~~-~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 678 (872)
..... -..+++.|+.++.+.+..++..++.+++.++..........+ ...++.|...+.+. +..++..|+++|+.+
T Consensus 285 -~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl 362 (529)
T 3tpo_A 285 -RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNI 362 (529)
T ss_dssp -HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred -hHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 11111 124677888899999999999999999998754333222212 24667777777754 467999999999999
Q ss_pred HHHhcCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhH-H-HHHHHHHHHHHhccccCCCch
Q 002877 679 CRALDDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYV-P-HALQMMQEAAKACAQLDMEDE 755 (872)
Q Consensus 679 ~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~-~i~~~l~~~~~~~~~~~~~d~ 755 (872)
+........... ..+++.++..|.++ +..++..++.++++++.........++ + .+++.|+..+... |
T Consensus 363 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~------d- 433 (529)
T 3tpo_A 363 TAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK------D- 433 (529)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS------C-
T ss_pred hcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC------C-
Confidence 754332222222 25788999999888 788999999999999875433322232 1 3566666654431 1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccchh-hhhhhhhhHHH--HHHHHHHHhcCCCCCHhHHHHHHHHHHHH
Q 002877 756 ELIDYGNQLRSSIFEAYSGILQGFKSA-RAEVMMPYAQH--LLQFIELIFKDNHRDENVTKAAVAVMGDL 822 (872)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~--il~~l~~~~~~~~~~~~~~~~a~~~l~~l 822 (872)
..++..++.++..++..-... ....+..++.. .++.|..+... .++++++.|..+|...
T Consensus 434 ------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~--~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 434 ------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH--ENESVYKASLNLIEKY 495 (529)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGC--SSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 246667777777776542211 11222222222 24455554433 6799999999888764
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.56 E-value=3.4e-11 Score=134.77 Aligned_cols=486 Identities=10% Similarity=0.062 Sum_probs=302.7
Q ss_pred HHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchH----HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccc
Q 002877 95 DLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPE----LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLV 170 (872)
Q Consensus 95 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~----ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~ 170 (872)
...++.+.+++...|+.+-..+..++. ..++ .++.+..-++++ ++.+|-.|+.+++.+..
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~------~~~e~~~L~iN~l~kDl~~~--n~~ir~lALr~L~~i~~-------- 140 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVN------SNSELIRLINNAIKNDLASR--NPTFMGLALHCIANVGS-------- 140 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCC------CCHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcc------CCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHhhccCC--------
Confidence 355667788888888877776666552 3344 456677777888 89999999999998854
Q ss_pred hhhHHHHHHHHHhcc--cCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 002877 171 QDEVNAVLTAVVQGM--NLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSI 248 (872)
Q Consensus 171 ~~~~~~l~~~l~~~l--~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l 248 (872)
....+.+++.+.+++ .+ .++.||+.|+-|+..+....++.... +.+++.+..++.+.++.++..++..+..+
T Consensus 141 ~e~~~~l~~~v~~~l~~~d--~~~~VRK~A~~al~kl~~~~p~~~~~----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGD--TMDSVKQSAALCLLRLYRTSPDLVPM----GDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSS--SCHHHHHHHHHHHHHHHHHCGGGCCC----CSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHhChhhcCc----hhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 345678888889998 66 78999999999999987643332221 12667778888899999999999999999
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHhcC--C-----------ChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHH
Q 002877 249 ASTYYEVLEPYMQTLFELTSNAVKG--D-----------EEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFI 315 (872)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~~~~--~-----------~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (872)
....+..+.+.++.++..+...+.. . ++=.....++++..++..+. +..
T Consensus 215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d-----------------~~~- 276 (621)
T 2vgl_A 215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED-----------------PAV- 276 (621)
T ss_dssp HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS-----------------HHH-
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC-----------------HHH-
Confidence 9887765555555555544333221 1 34566666776666553210 111
Q ss_pred HHhHHhhHHHHHHHHhcccCCc--ccCCCCcchhhhHHHHHHHHHhhcC-CcchhchHHHHHhhccCCCcchHHHHHHHH
Q 002877 316 EKARSSLVPMLLETLLKQEEDQ--DQDDSIWNISMAGGTCLGLVARTVG-DEVVPLVMPFVEANIVKSDWRCREAATYAF 392 (872)
Q Consensus 316 ~~~l~~l~~~l~~~l~~~~~d~--~~d~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 392 (872)
...+..+++.++..+.+..... ..-.....+...+..++ ....+ ........+.+...+.+++...|+.++.++
T Consensus 277 ~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i---~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l 353 (621)
T 2vgl_A 277 RGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI---IHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESM 353 (621)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 2222223333333322111000 00000012333333333 33222 233445566777778788889999999999
Q ss_pred HHhhcCCCccchhHhHHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-C
Q 002877 393 GSVLEGPTIDKLAPLVHAGFDFLLNAMR-DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-A 470 (872)
Q Consensus 393 ~~i~~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~ 470 (872)
..++.... + ...+....+.++.++. |+++.||..++.++..++. ...+..++..|...+.+ +
T Consensus 354 ~~l~~~~~-~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-------------~~Nv~~Iv~eL~~yl~~~d 417 (621)
T 2vgl_A 354 CTLASSEF-S--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-------------RSNAQQIVAEMLSYLETAD 417 (621)
T ss_dssp HHHTTCTT-T--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhccC-c--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-------------hhhHHHHHHHHHHHHHhcC
Confidence 99986541 1 2345666788888898 9999999999999888762 24578888888888887 8
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 002877 471 PNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAEL 550 (872)
Q Consensus 471 ~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l 550 (872)
...+..++.+++.++..+ +.....|+..++..+...-. .+...+...+..++...+ +...+.
T Consensus 418 ~~~~~~~v~~I~~la~k~------~~~~~~~v~~Ll~ll~~~~~-------~v~~ev~~~l~~ii~~~~--~~~~~~--- 479 (621)
T 2vgl_A 418 YSIREEIVLKVAILAEKY------AVDYTWYVDTILNLIRIAGD-------YVSEEVWYRVIQIVINRD--DVQGYA--- 479 (621)
T ss_dssp HHHHHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHGG-------GSCSHHHHHHHHHHGGGC--SCHHHH---
T ss_pred HHHHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHhhcc-------cchHHHHHHHHHHHhCCh--hHHHHH---
Confidence 899999999999999887 56666666655554433211 123445566666665554 333332
Q ss_pred HHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHH
Q 002877 551 LPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAM 630 (872)
Q Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~ 630 (872)
+..+++.+.. ......+...++++++.....+...+ ...| ..++..+...+...+..+|..++
T Consensus 480 ~~~l~~~l~~-----------~~~~~~li~~~~wilGEy~~~~~~~~----~~~p--~~~l~~l~~~~~~~~~~v~~~~L 542 (621)
T 2vgl_A 480 AKTVFEALQA-----------PACHENLVKVGGYILGEFGNLIAGDP----RSSP--LIQFNLLHSKFHLCSVPTRALLL 542 (621)
T ss_dssp HHHHHHHHTS-----------SSCCHHHHHHHHHHHHHHTHHHHSST----TSCH--HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcC-----------ccchHHHHHHHHHHhcchHHHhcccC----CCCH--HHHHHHHHHHhccCCHHHHHHHH
Confidence 2222322221 11112333455577777755443310 1111 25566677677777889999999
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHhhhc-ccchHhHHHHHHHHHHHH
Q 002877 631 LAIGALAYATGPEFAKYMPEFYQYLQMGLQ-NSEEYQVCAITVGVVGDV 678 (872)
Q Consensus 631 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~~v~~~a~~~l~~l 678 (872)
.++..+....++ . .+.+...+..+.. ++.+.++|..|+..+.-+
T Consensus 543 ta~~Kl~~~~p~-~---~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 543 STYIKFVNLFPE-V---KATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHCGG-G---HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChH-H---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 888887665432 1 1223333333332 156788999998876655
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.6e-13 Score=135.14 Aligned_cols=207 Identities=13% Similarity=0.134 Sum_probs=165.3
Q ss_pred CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhc
Q 002877 363 DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMR-DENNHVKDTTAWTLSRIFELL 441 (872)
Q Consensus 363 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 441 (872)
..+.+.+-+.+.+.+.+.+|+.|.+|+..+..+++++. +.....+.++++.+...+. |+++.||..|+.+++.++..+
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~-~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHP-KLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCS-SBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 34444555556677789999999999999999988742 3223345688899999995 999999999999999999887
Q ss_pred cCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcc
Q 002877 442 HCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGG 520 (872)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~ 520 (872)
.. ...+|.+.+++.++..+.| ++.||.+|+.++..++... + +..+++.+...+.. .+
T Consensus 89 ~~-------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------~------~~~ll~~l~~~l~~---~~ 146 (242)
T 2qk2_A 89 AK-------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------S------LEAQQESIVESLSN---KN 146 (242)
T ss_dssp GG-------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------C------HHHHHHHHHHHTTC---SC
T ss_pred hh-------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------C------HHHHHHHHHHHHcC---CC
Confidence 75 4578999999999999999 9999999999999998653 1 46788888888863 35
Q ss_pred hhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccch
Q 002877 521 SKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATK 600 (872)
Q Consensus 521 ~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 600 (872)
..+|..++.+++.++...+ .. .
T Consensus 147 ~~vr~~~l~~l~~~l~~~~-~~----------------------------------------------------~----- 168 (242)
T 2qk2_A 147 PSVKSETALFIARALTRTQ-PT----------------------------------------------------A----- 168 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCC-GG----------------------------------------------------G-----
T ss_pred hHHHHHHHHHHHHHHHHcC-CC----------------------------------------------------C-----
Confidence 6778888888877766553 00 0
Q ss_pred hhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhH-HHhhhHHH
Q 002877 601 SFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPE-FAKYMPEF 651 (872)
Q Consensus 601 ~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~l~~i 651 (872)
...++++.+++.+..++++.++.+|..|..+++.++...|.. +.+|++.+
T Consensus 169 -~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 169 -LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp -CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred -ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 345677889999999999999999999999999999999875 77777654
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.6e-12 Score=125.49 Aligned_cols=205 Identities=8% Similarity=0.093 Sum_probs=164.3
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHH-HHhhccCCCCCccccCcccHHHHHHHHHHHh-hc-ChHHHHHHHHHHHHHHHhhcc
Q 002877 414 FLLNAMRDENNHVKDTTAWTLSR-IFELLHCPATGFSVISPENLQRILTVLLESI-KD-APNVAEKVCGAIYYLAQGYED 490 (872)
Q Consensus 414 ~l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-~d-~~~v~~~a~~al~~l~~~~~~ 490 (872)
.+.+.+.+.+|..|.+|+..|+. +.+..+. .......+..++..|.+.+ .| |..|+..|+.+++.+++.+
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~-----i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l-- 92 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKK-----LKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL-- 92 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCC-----BCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCc-----cccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc--
Confidence 34556789999999999999999 8765443 1110234467899999999 67 9999999999999999988
Q ss_pred CCCCC-CCch-hhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcC
Q 002877 491 AGPSS-SLLS-PYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVS 568 (872)
Q Consensus 491 ~~~~~-~~l~-~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 568 (872)
+ ..+. +|...++|.++..+. + ....|+..+..++..++...+
T Consensus 93 ----~~~~f~~~y~~~llp~ll~~l~--d-kk~~V~~aa~~al~~i~~~~~----------------------------- 136 (249)
T 2qk1_A 93 ----KTPGFSKDYVSLVFTPLLDRTK--E-KKPSVIEAIRKALLTICKYYD----------------------------- 136 (249)
T ss_dssp ----CTTTSCHHHHHHHHHHHHHGGG--C-CCHHHHHHHHHHHHHHHHHSC-----------------------------
T ss_pred ----ccccccHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHHcc-----------------------------
Confidence 6 7888 999999999999997 3 234566666666666655443
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh---hHHH
Q 002877 569 SDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG---PEFA 645 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~---~~~~ 645 (872)
+. ...+|++.+++.++..+.+.++.+|+.++.++++++...+ ..+.
T Consensus 137 --------------------------~~-----~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 137 --------------------------PL-----ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp --------------------------TT-----CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred --------------------------cc-----ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 21 2223478899999999999999999999999999999887 5788
Q ss_pred hhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCC-ccccHHHH
Q 002877 646 KYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDK-VLPFCDGI 693 (872)
Q Consensus 646 ~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~i 693 (872)
+|+ +.++|.+.+++.+. ++++|..|+.+++.+++.+|+. +.||++.+
T Consensus 186 ~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999 99999999999875 5679999999999999999964 77877654
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.47 E-value=7.2e-12 Score=138.99 Aligned_cols=402 Identities=13% Similarity=0.097 Sum_probs=255.9
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhhh
Q 002877 178 LTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEME-RNYIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYEV 255 (872)
Q Consensus 178 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~ 255 (872)
++.+.+.+.+ ++.+.+..|+..+..++..-.. ...+.. ..-+++.+.+++. +++++++..|+.+|..++...+..
T Consensus 78 l~~lv~~l~s--~d~~~q~~a~~~~rklLs~~~~-~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 78 VEDIVKGINS--NNLESQLQATQAARKLLSREKQ-PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HHHHHHHHTS--SCHHHHHHHHHHHHHHHTSSSC-CCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCC-chHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 4455566766 6788999999888876532111 000111 1115677777775 567899999999999998755443
Q ss_pred hHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHH-hhHHHHHHHHhcc
Q 002877 256 LEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARS-SLVPMLLETLLKQ 333 (872)
Q Consensus 256 ~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~ 333 (872)
-...+. ..++.++..+.+++++++..|+..|..++..... .....+. ..++.++..+...
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~------------------~r~~i~~~g~i~~Ll~lL~~~ 216 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA------------------FRDLVIKHGAIDPLLALLAVP 216 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH------------------HHHHHHHTTCHHHHHHTTCSS
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH------------------HHHHHHHcCCcHHHHHHHhcc
Confidence 333333 4677788888999999999999999998764221 1111111 3566666666432
Q ss_pred cCCcccCCCCcchhhhHHHHHHHHHhhcCC-c---chhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH
Q 002877 334 EEDQDQDDSIWNISMAGGTCLGLVARTVGD-E---VVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH 409 (872)
Q Consensus 334 ~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~-~---~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~ 409 (872)
+.+ .........+..++..++..... . ....++|.+...+.+++...+..++++++.++.+.. +.......
T Consensus 217 ~~~----~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~v~~ 291 (529)
T 3tpo_A 217 DLS----TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-ERIEMVVK 291 (529)
T ss_dssp CGG----GSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-HHHHHHHT
T ss_pred chh----HhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh-hhHHHHHh
Confidence 211 01123445566677776654321 1 124567888889999999999999999999998652 32222222
Q ss_pred -hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcc-cHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHH
Q 002877 410 -AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPE-NLQRILTVLLESIKD-APNVAEKVCGAIYYLAQ 486 (872)
Q Consensus 410 -~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (872)
.++|.+++.+.++++.++..++.+++.++..... .... .-...++.|...+.+ ++.++..|+++|++++.
T Consensus 292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-------~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-------QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 364 (529)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-------HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH-------HHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999998743221 0000 112345667777887 89999999999999986
Q ss_pred hhccCCCCCCCchhh-HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH--HHHHHHHHHHHHHHh
Q 002877 487 GYEDAGPSSSLLSPY-LTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA--ELLPAIMGRLGQTLE 563 (872)
Q Consensus 487 ~~~~~~~~~~~l~~~-~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~ 563 (872)
.. +...... -..+++.++..+... +..++..|.++|..++.... .+...++- ..++++++.+..
T Consensus 365 ~~------~~~~~~v~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nl~~~~~-~~~~~~l~~~g~i~~L~~LL~~--- 431 (529)
T 3tpo_A 365 GR------QDQIQQVVNHGLVPFLVGVLSKA---DFKTQKAAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSA--- 431 (529)
T ss_dssp SC------HHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGC---
T ss_pred cc------HHHHHHHHhcCcHHHHHHHhcCC---CHHHHHHHHHHHHHHHcCCC-HHHHHHHHHCcCHHHHHHHhcC---
Confidence 43 1111111 125778888888743 46679999999999987655 33323322 356677665542
Q ss_pred hhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHH--HHHHHHHHHHccCChhHHHHHHHHHHHH
Q 002877 564 LQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTAD--QIMVLFLRVFACRSSTVHEEAMLAIGAL 636 (872)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~v~~~a~~~l~~l 636 (872)
...+++..++.+|.++++..... ...+.+...+. ..++.+..+..+.+.++++.|+..+..+
T Consensus 432 ----------~d~~i~~~~L~aL~nil~~~~~~-~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 432 ----------KDTKIIQVILDAISNIFQAAEKL-GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHHHHhHhc-cChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 12346677788888887644321 00111222222 2355666666777889999988887665
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.46 E-value=4.3e-11 Score=131.79 Aligned_cols=391 Identities=15% Similarity=0.153 Sum_probs=263.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ChH-------HHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccc
Q 002877 4 EITQFLLAAQSADANIRNEAEANLRQLQQQ--NLP-------GFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATT 74 (872)
Q Consensus 4 ~~~~~l~~~~s~~~~~r~~A~~~L~~~~~~--~~~-------~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~ 74 (872)
.+.++++++.|.|.+.+.+|.+.+.++... +|| |.++.|.++|.. +.++.++.-|+..|.|....+.+.+
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 478899999999999999999999997543 332 467888898876 3578999999999999764321110
Q ss_pred hHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCC----CchHHHHHHHHhhccCC---ccH
Q 002877 75 KEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQK----QWPELIRSLLNNMTQQD---SLA 147 (872)
Q Consensus 75 ~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~----~~~~ll~~l~~~l~~~~---~~~ 147 (872)
. .-.....-+.|++.|.+++..+|..++.+|+.|+... +.. .-...++.|+..+.+++ ...
T Consensus 137 ~-----------~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~-~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 137 K-----------AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp H-----------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred H-----------HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 0 0011134457889999999999999999999998542 110 01234677788887652 123
Q ss_pred HHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 002877 148 ALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVC 227 (872)
Q Consensus 148 ~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 227 (872)
..+..+..++..++..-.+..- ......++|.+...+.+ ++.+++..++.+|..+...-.... ......-+++.+.
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~~--~~~~v~~~A~~aL~~L~~~~~~~~-~~i~~~g~i~~Lv 280 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLHH--NDPEVLADSCWAISYLTDGPNERI-EMVVKKGVVPQLV 280 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCC-HHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTSSCHHHH-HHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchhH-HHHHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHHhhchhhhH-HHHHhcccchhhh
Confidence 4566788888888875432221 34567789999999988 688999999999988643111100 0000011466777
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCC
Q 002877 228 ETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGD 306 (872)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~ 306 (872)
+++.+++..++..++.++..++..........+. ..++.+...+++.+++++..|...+..++.....
T Consensus 281 ~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~----------- 349 (510)
T 3ul1_B 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD----------- 349 (510)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-----------
T ss_pred hhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-----------
Confidence 8888899999999999999987644332222122 2344455566778899999999888888754221
Q ss_pred CCCCchHHHHHhHH-hhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcch-----hchHHHHHhhccCC
Q 002877 307 SDSPNYHFIEKARS-SLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVV-----PLVMPFVEANIVKS 380 (872)
Q Consensus 307 ~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~-----~~l~~~l~~~l~~~ 380 (872)
....... .++|.++..+...+ +.++..|+.+|..++........ .-.++.+.+.+.++
T Consensus 350 -------~~~~v~~~g~i~~Lv~lL~~~~---------~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~ 413 (510)
T 3ul1_B 350 -------QIQQVVNHGLVPFLVGVLSKAD---------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413 (510)
T ss_dssp -------HHHHHHHTTHHHHHHHHHHSSC---------HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred -------HHHHHHhcCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 1122222 57788888876422 67899999999998875432211 23467777888889
Q ss_pred CcchHHHHHHHHHHhhcCC---C-ccchhHhHH--hHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 002877 381 DWRCREAATYAFGSVLEGP---T-IDKLAPLVH--AGFDFLLNAMRDENNHVKDTTAWTLSRIF 438 (872)
Q Consensus 381 ~~~~r~aal~~l~~i~~~~---~-~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 438 (872)
+++.+..++.+|..+.... . ...+...+. ..+..|-....+++..|+..|...|.+|.
T Consensus 414 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 414 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999999998876421 1 111222232 34566666667899999999999988875
No 55
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=4.3e-12 Score=124.91 Aligned_cols=199 Identities=14% Similarity=0.198 Sum_probs=160.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh-c-ChHHHHHHHHHHHHHHHhh
Q 002877 411 GFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK-D-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 411 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d-~~~v~~~a~~al~~l~~~~ 488 (872)
+-+.+.+.++|.++..|..|+..|..+.+..+. .....+..+++.+...+. | +..|+..|+.+++.++...
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~-------~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPK-------LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSS-------BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCC-------CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 334577788999999999999999999887543 122345789999999995 8 9999999999999999988
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcC
Q 002877 489 EDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVS 568 (872)
Q Consensus 489 ~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 568 (872)
+..+.+|...++|.++..+. | ....+|..+..++..++...+
T Consensus 89 ------~~~~~~~~~~ilp~ll~~l~--d-~~~~vr~~a~~aL~~~~~~~~----------------------------- 130 (242)
T 2qk2_A 89 ------AKRFSNYASACVPSLLEKFK--E-KKPNVVTALREAIDAIYASTS----------------------------- 130 (242)
T ss_dssp ------GGGGHHHHHHHHHHHHHGGG--C-CCHHHHHHHHHHHHHHHTTSC-----------------------------
T ss_pred ------hhhHHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCC-----------------------------
Confidence 66789999999999999998 3 345678888877777765433
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh--HHHh
Q 002877 569 SDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP--EFAK 646 (872)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~--~~~~ 646 (872)
++.+++.+...+.+.++.+|..++.+++.++...+. .+.+
T Consensus 131 --------------------------------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 131 --------------------------------------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp --------------------------------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred --------------------------------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 234566677778888899999999999998777642 4678
Q ss_pred hhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCC-ccccHHHH
Q 002877 647 YMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDK-VLPFCDGI 693 (872)
Q Consensus 647 ~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~i 693 (872)
|++.++|.+...+.+. .+++|..|..+++.++..+|.. +.+|++.+
T Consensus 173 ~l~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 9999999999999865 5679999999999999999864 66666543
No 56
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1e-07 Score=104.90 Aligned_cols=546 Identities=10% Similarity=0.087 Sum_probs=298.6
Q ss_pred HHHHHHhhc-CCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchh
Q 002877 94 KDLLLRTLA-SPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQD 172 (872)
Q Consensus 94 ~~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~ 172 (872)
...|...+. ..+..++-.+..++..+.+..+ .|++ +.+++..+.-....+++|..++.++.++.+.. ++.+ ..
T Consensus 134 l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~-~~ 207 (778)
T 3opb_A 134 LNELQIRIHYGEDTHVTYLLSIILQLLNKFKY---NFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDF-DK 207 (778)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCC---CSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHH-HH
T ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHHHcCc---cccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHH-HH
Confidence 334433333 4555777777777777766653 6887 77777766543226789999999998888776 2322 23
Q ss_pred hHHHHHHHHH-hcccCC-CCCHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhh-cCCcHHHHHHHHHHHHHH
Q 002877 173 EVNAVLTAVV-QGMNLA-EHSAEVRLAATRALYNALDFALTN-FQNEMERNYIMKVVCETA-KSKEVEIRQAAFECLVSI 248 (872)
Q Consensus 173 ~~~~l~~~l~-~~l~~~-~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~~~ll~~l~~~~-~~~~~~~~~~~~~~l~~l 248 (872)
.+..++..++ ..=.+. ..+--+-..++.++..+++-+... |..+. +.+.+...+ ...+..+...+++++...
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~----~~~~l~~~~~~~~~~~~~~a~L~lLsaA 283 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKG----LSKLFKKRVFEEQDLQFTKELLRLLSSA 283 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTT----HHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHcccc----HHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 3333333222 100111 022233334444444444322221 22222 233333333 335667777888888776
Q ss_pred HHhh--hhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHH
Q 002877 249 ASTY--YEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPML 326 (872)
Q Consensus 249 ~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 326 (872)
+... ..++.. ..++.+...+++ +.++..|.-.|..+...... . ..-+..+.+.+
T Consensus 284 Ci~~~cR~~I~~---~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~-------~------------~~si~~La~~~ 339 (778)
T 3opb_A 284 CIDETMRTYITE---NYLQLLERSLNV--EDVQIYSALVLVKTWSFTKL-------T------------CINLKQLSEIF 339 (778)
T ss_dssp CCSHHHHHHHHH---HHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC-------T------------TCCHHHHHHHH
T ss_pred hCCcHHHHHHHH---hHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC-------C------------cCcHHHHHHHH
Confidence 5322 223322 233444444443 46777666555554433210 0 01123466666
Q ss_pred HHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC--Ccch--hchHHHHHhhccC-CCcchHHHHHHHHHHhhcCCCc
Q 002877 327 LETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG--DEVV--PLVMPFVEANIVK-SDWRCREAATYAFGSVLEGPTI 401 (872)
Q Consensus 327 ~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~--~~~~--~~l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~~~~ 401 (872)
...+...+ ...+..|.+.|..++.... +.+. +..+..+.+.+.+ .+....++++..+..++.....
T Consensus 340 ~~~L~~~~---------~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 340 INAISRRI---------VPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHTTTCC---------HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHhcCC---------ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 66665422 1125666666666543211 1111 1223334444442 4455667777777777653210
Q ss_pred ------------------------c-c-----------hhHh-HH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 402 ------------------------D-K-----------LAPL-VH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 402 ------------------------~-~-----------~~~~-l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
+ . .... +. .++|.+...++.+++.+|..+++++..++..-..
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 0 0 0011 11 5778899999999999999999999999854321
Q ss_pred CCCCccccCcccHHHHHHHHHHHhhc-Ch---HHHHHHHHHHHHHHHhhccCCCCCCCch-hh-HHHHHHHHHHhhcc-C
Q 002877 444 PATGFSVISPENLQRILTVLLESIKD-AP---NVAEKVCGAIYYLAQGYEDAGPSSSLLS-PY-LTSIIAELLRAADR-T 516 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~l~~~l~d-~~---~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~-~~~il~~l~~~l~~-~ 516 (872)
...-.-...++.|+..+.+ .. .++..|+.+|.+++.... +..+. .| ....++.|+..+.. .
T Consensus 491 -------R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n-----p~~~f~~~~~~~aI~pLv~LL~~~~ 558 (778)
T 3opb_A 491 -------IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN-----PGLIFKKYSALNAIPFLFELLPRST 558 (778)
T ss_dssp -------HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC-----HHHHSSSSCSTTHHHHHHHTSCCSS
T ss_pred -------HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC-----HHHHcCCCccccchHHHHHHcCCCC
Confidence 1111113567788888876 33 278999999999986542 11100 00 01678888888862 1
Q ss_pred CCcc---------h-hHHHHHHHHHHHHHhcCCCc---cc-HHHHH--HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHH
Q 002877 517 DVGG---------S-KLRSAAYETLNEVVRCSNIT---ET-SQIIA--ELLPAIMGRLGQTLELQIVSSDDREKQGDLQA 580 (872)
Q Consensus 517 ~~~~---------~-~vr~~a~~al~~l~~~~~~~---~~-~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 580 (872)
+... . ..+..|+.||..++.... . +. ...+. ..+|.+.+.+.. ....++.
T Consensus 559 ~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~-n~~E~~r~~Ii~~~ga~~~L~~LL~s-------------~n~~Vrr 624 (778)
T 3opb_A 559 PVDDNPLHNDEQIKLTDNYEALLALTNLASSET-SDGEEVCKHIVSTKVYWSTIENLMLD-------------ENVPLQR 624 (778)
T ss_dssp SCSSCC---CCCCCHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHSHHHHHHHHHGGGC-------------SSHHHHH
T ss_pred CcccccccccccccHHHHHHHHHHHHHHhcCCc-ccchHHHHHHHHhcCHHHHHHHHHhC-------------CCHHHHH
Confidence 1110 0 125688889999988753 1 11 22332 244444443321 1235788
Q ss_pred HHHHHHHHHHHHcCCCccchhhch----hhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHH
Q 002877 581 SLCGVLQVIIQKFSSTDATKSFIL----QTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQY 654 (872)
Q Consensus 581 ~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~ 654 (872)
.+++++.+++..-..- .. .+. +-..+=++.++.+++..+..+|..|..+++.++...+......+ +..++.
T Consensus 625 AA~elI~NL~~~~e~i--~~-k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~ 701 (778)
T 3opb_A 625 STLELISNMMSHPLTI--AA-KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIEN 701 (778)
T ss_dssp HHHHHHHHHHTSGGGT--GG-GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCcHHH--HH-HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHH
Confidence 9999999998522110 00 111 11112378899999988999999999999998654433222222 245555
Q ss_pred HHhhhccc-chHhHHHHHHHHHHHHHHHh----c-CCccccH--HHHHHHHHHHhcCCCCCCCCc
Q 002877 655 LQMGLQNS-EEYQVCAITVGVVGDVCRAL----D-DKVLPFC--DGIMSLLLNALSNSQLNRSVK 711 (872)
Q Consensus 655 l~~~l~~~-~~~~v~~~a~~~l~~l~~~~----~-~~~~~~~--~~i~~~l~~~l~~~~~~~~~~ 711 (872)
+...+++. ++.+++..++.++.+++... + +.+..+. ..+...+.+++.+++.+.+..
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~ 766 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFS 766 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHH
Confidence 55555542 45679999999999998632 2 3344444 467778888888775444443
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2e-07 Score=102.60 Aligned_cols=587 Identities=11% Similarity=0.098 Sum_probs=323.6
Q ss_pred chHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Q 002877 129 WPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDF 208 (872)
Q Consensus 129 ~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 208 (872)
-..++..+...++.+ ........+.++.++..++. -.+ +.+..++..+-... ...+||..++-++..+...
T Consensus 130 ~~~ll~~~~~~~~~~--~~~~~~~~l~~~~~l~~~~~-~~~--~~~~~l~~~~~~~~----~~~~~~~~~l~i~~~~~~~ 200 (778)
T 3opb_A 130 TIALLNELQIRIHYG--EDTHVTYLLSIILQLLNKFK-YNF--KEVRFLVKELILRI----SEDEVKSMMLIIFAELQSS 200 (778)
T ss_dssp GHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSC-CCS--TTTTHHHHHHHTTT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC--CCcchhHHHHHHHHHHHHcC-ccc--cchhhHHHHhcccc----ChhhhHHHHHHHHHHHHHh
Confidence 345677776666633 22256677778878887763 222 22444554444322 4679999999988887766
Q ss_pred HHhhhhhhhHHHHHHHHHHHhh----cCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH--HHHHHHHHHh-cCCChHHHHH
Q 002877 209 ALTNFQNEMERNYIMKVVCETA----KSKEVEIRQAAFECLVSIASTYYEVLEPYMQ--TLFELTSNAV-KGDEEAVALQ 281 (872)
Q Consensus 209 ~~~~~~~~~~~~~ll~~l~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~-~~~~~~~~~~ 281 (872)
.+..+.. .+...+-..+ .+...+-...++..+..+....|+.....+- .+.+.+.... +..+..+...
T Consensus 201 ~~~~~~~-----~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a 275 (778)
T 3opb_A 201 FQKDFDK-----AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKE 275 (778)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHH
T ss_pred CchHHHH-----HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHH
Confidence 5544332 2333333222 1112223445666666655544444332211 2344444444 3456777788
Q ss_pred HHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhc
Q 002877 282 AVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTV 361 (872)
Q Consensus 282 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~ 361 (872)
+++.+...|..+. +..++.. ..++.|...+.. ..+|..|+-.|..+....
T Consensus 276 ~L~lLsaACi~~~----------------cR~~I~~---~~~~~L~~~l~~-----------~~ir~lAavvL~KL~~~~ 325 (778)
T 3opb_A 276 LLRLLSSACIDET----------------MRTYITE---NYLQLLERSLNV-----------EDVQIYSALVLVKTWSFT 325 (778)
T ss_dssp HHHHHHHHCCSHH----------------HHHHHHH---HHHHHHHHHTTS-----------GGGHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhCCcH----------------HHHHHHH---hHHHHHHHHhcc-----------HHHHHHHHHHHHHHhcCC
Confidence 8888888887533 2233322 233444433321 246777777777776554
Q ss_pred C--CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH---hHHHHHHHhcCC-CcHHHHHHHHHHHH
Q 002877 362 G--DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH---AGFDFLLNAMRD-ENNHVKDTTAWTLS 435 (872)
Q Consensus 362 ~--~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~---~l~~~l~~~l~d-~~~~vr~~a~~~l~ 435 (872)
+ +.-+..+.+.+..++.+++-..|+-|+.+|+.++-.. .++..+. ..++.+++.+++ .+..+.+.++.++.
T Consensus 326 ~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~---~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~ 402 (778)
T 3opb_A 326 KLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKA---SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402 (778)
T ss_dssp TCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS---HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH---HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3 2334456777888887766556888999999987643 2333332 567888888875 66778999999999
Q ss_pred HHHhhccCCCCCccccCcccHHHHHHHHHHH---hhcChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHh
Q 002877 436 RIFELLHCPATGFSVISPENLQRILTVLLES---IKDAPNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRA 512 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---l~d~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~ 512 (872)
++....+.. ....+.+.++-...-.. -+.+.............-+...- . .+++|.|...
T Consensus 403 NLt~~~~~~-----~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~-----e-------aGvIp~Lv~L 465 (778)
T 3opb_A 403 NLSTLPEEX-----XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL-----R-------TELISFLKRE 465 (778)
T ss_dssp HTTCCCCCC-----CCCCC------------------CCTHHHHHHHHHHHHHHHTT-----T-------TTHHHHHHHH
T ss_pred HhcCCCccc-----chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH-----H-------CcCHHHHHHH
Confidence 998876641 11112222222211111 01100100111110000111110 0 1367777777
Q ss_pred hccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHH
Q 002877 513 ADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIA-ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQ 591 (872)
Q Consensus 513 l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 591 (872)
+.+. +..+|..+.++|..+... + ..-....+ ..++.+++.+.+.- +.. ...+..++.+|..+..
T Consensus 466 l~S~---s~~~re~A~~aL~nLS~d-~-~~R~~lvqqGal~~LL~lL~s~~--------~~~--~~~k~~AA~ALArLli 530 (778)
T 3opb_A 466 MHNL---SPNCKQQVVRIIYNITRS-K-NFIPQLAQQGAVKIILEYLANKQ--------DIG--EPIRILGCRALTRMLI 530 (778)
T ss_dssp GGGS---CHHHHHHHHHHHHHHHTS-G-GGHHHHHHTTHHHHHHHHTTCC-----------C--CHHHHHHHHHHHHHHH
T ss_pred HcCC---CHHHHHHHHHHHHHHcCC-H-HHHHHHHHCCCHHHHHHHHhcCC--------Ccc--hHHHHHHHHHHHHHHh
Confidence 7643 356699999999999765 2 22233333 46777777765320 000 1256677888888764
Q ss_pred HcCCCccchhhchhh-HHHHHHHHHHHHcc-CCh-------------hHHHHHHHHHHHHHHHhh---hHH-HhhhH--H
Q 002877 592 KFSSTDATKSFILQT-ADQIMVLFLRVFAC-RSS-------------TVHEEAMLAIGALAYATG---PEF-AKYMP--E 650 (872)
Q Consensus 592 ~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~-~~~-------------~v~~~a~~~l~~l~~~~~---~~~-~~~l~--~ 650 (872)
...+. ..+..+ ....++.|+.+|.. +.. .-+..|+.+|++++.... +.. ...+. .
T Consensus 531 s~np~----~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 531 FTNPG----LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp TSCHH----HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred cCCHH----HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 33221 011111 11567777777762 211 115678999999988642 222 22343 4
Q ss_pred HHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc---CCccccH-HH---HHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 002877 651 FYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD---DKVLPFC-DG---IMSLLLNALSNSQLNRSVKPPILSCFGDIAL 723 (872)
Q Consensus 651 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~---~~~~~~~-~~---i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~ 723 (872)
.+|.|...+.+. +..++.+|++++..++.... ..+...- +. =++.|+.+++.. +..+|..|..+++.++.
T Consensus 607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts 683 (778)
T 3opb_A 607 YWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcC
Confidence 889998888764 45699999999999996443 1232221 22 378889988776 88999999999999865
Q ss_pred hhccchhhhH--HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchh-hhhhhhhhH--HHHHHHH
Q 002877 724 AIGVHFEKYV--PHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSA-RAEVMMPYA--QHLLQFI 798 (872)
Q Consensus 724 ~~~~~~~~~l--~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~--~~il~~l 798 (872)
..+......+ +..++.++..++..- -..++|...+.++..+....... .++.+..+. +.+.+.+
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~-----------~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l 752 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQI-----------DDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDAL 752 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHH
T ss_pred CChHHHHHHHHccccHHHHHHHHhccC-----------CCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHH
Confidence 4443222222 245555555554310 01367777788888887522211 122333333 4455666
Q ss_pred HHHhcCCCCCHhHH
Q 002877 799 ELIFKDNHRDENVT 812 (872)
Q Consensus 799 ~~~~~~~~~~~~~~ 812 (872)
.+++..++.++++.
T Consensus 753 ~~~lk~~~~~~e~~ 766 (778)
T 3opb_A 753 NMSLKRGDSGPEFS 766 (778)
T ss_dssp HHHHSSSSSCSSTT
T ss_pred HHHHhCCCchHHHH
Confidence 66666555555543
No 58
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.25 E-value=3.2e-07 Score=103.27 Aligned_cols=293 Identities=10% Similarity=0.060 Sum_probs=182.5
Q ss_pred hHHHHHhhcc---CCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCc--------HHHHHHHHHHHHHH
Q 002877 369 VMPFVEANIV---KSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDEN--------NHVKDTTAWTLSRI 437 (872)
Q Consensus 369 l~~~l~~~l~---~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~--------~~vr~~a~~~l~~l 437 (872)
.+..+.+++. +.+...|.+|++++|.+..+.. + .++..|...+.+++ +.+|..|+..||..
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-R-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-H-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-H-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4666677776 5677899999999999988764 2 23445555554433 78999999999986
Q ss_pred HhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccC
Q 002877 438 FELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRT 516 (872)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~ 516 (872)
.--.. -+.+++.|.+.+.+ +..++..|+.+++.+.-+. + -...+..++..+.. .
T Consensus 465 ~~GS~-------------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGT------g--n~~ai~~LL~~~~e----~ 519 (963)
T 4ady_A 465 AMGSA-------------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGT------G--KPEAIHDMFTYSQE----T 519 (963)
T ss_dssp STTCC-------------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC------C--CHHHHHHHHHHHHH----C
T ss_pred hcCCC-------------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc------C--CHHHHHHHHHHHhc----c
Confidence 43222 24567777777776 6667778888888765432 1 12333444443332 1
Q ss_pred CCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCC
Q 002877 517 DVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSST 596 (872)
Q Consensus 517 ~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 596 (872)
.+..+|+.+..+|+.+.-..+ +.. +.+++.+.. +....+|..++.+++.-.-+.|.
T Consensus 520 --~~e~vrR~aalgLGll~~g~~-e~~--------~~li~~L~~------------~~dp~vRygaa~alglAyaGTGn- 575 (963)
T 4ady_A 520 --QHGNITRGLAVGLALINYGRQ-ELA--------DDLITKMLA------------SDESLLRYGGAFTIALAYAGTGN- 575 (963)
T ss_dssp --SCHHHHHHHHHHHHHHTTTCG-GGG--------HHHHHHHHH------------CSCHHHHHHHHHHHHHHTTTSCC-
T ss_pred --CcHHHHHHHHHHHHhhhCCCh-HHH--------HHHHHHHHh------------CCCHHHHHHHHHHHHHHhcCCCC-
Confidence 234578889889888754444 222 222233322 11123444444444433333333
Q ss_pred ccchhhchhhHHHHHHHHHHH-HccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHH
Q 002877 597 DATKSFILQTADQIMVLFLRV-FACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVV 675 (872)
Q Consensus 597 ~~~~~~~~~~~~~l~~~l~~~-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l 675 (872)
...++.|+.. .++.+..+|+.|..+++-+.-.-. ..++.+...+.++.++.+|..|..++
T Consensus 576 -----------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalAL 636 (963)
T 4ady_A 576 -----------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFAL 636 (963)
T ss_dssp -----------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2344434443 345577899999888887643211 23555555555566788999999999
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHH
Q 002877 676 GDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 676 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~ 745 (872)
|.+....+ ...++..|.+...++ +..||..|+.++|.|+....+...+.+..+...+.+...
T Consensus 637 Gli~aGn~------~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 637 GIACAGKG------LQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHTSSSC------CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhccCCC------cHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 98864333 256778777877766 899999999999999876666544556666555555543
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.21 E-value=8e-10 Score=111.64 Aligned_cols=252 Identities=12% Similarity=0.123 Sum_probs=174.4
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcc
Q 002877 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFS 449 (872)
Q Consensus 370 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 449 (872)
++.+...+.++++.+|..|+.+|+.+.. +..++.+...+.|+++.+|..++++|+++...
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--------- 84 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--------- 84 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---------
Confidence 4556667788899999999999998852 25678888999999999999999999987521
Q ss_pred ccCcccHHHHHHHHHH-Hhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHH
Q 002877 450 VISPENLQRILTVLLE-SIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAA 527 (872)
Q Consensus 450 ~~~~~~~~~~l~~l~~-~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 527 (872)
....+.+++.+.. .+.| ++.||..++++|+.+.... ..+.+.+++.+...++. .+..+|..+
T Consensus 85 ---~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~----------~~~~~~~~~~L~~~l~d---~~~~vR~~a 148 (280)
T 1oyz_A 85 ---KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN----------PIYSPKIVEQSQITAFD---KSTNVRRAT 148 (280)
T ss_dssp ---TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC----------GGGHHHHHHHHHHHTTC---SCHHHHHHH
T ss_pred ---cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----------CcccHHHHHHHHHHhhC---CCHHHHHHH
Confidence 1235566676663 4566 9999999999999988653 13456778888888873 346789999
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH
Q 002877 528 YETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA 607 (872)
Q Consensus 528 ~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 607 (872)
..+++.+... ..+|.+...+. +....+|..++.+++.+ +. ..
T Consensus 149 ~~aL~~~~~~-----------~~~~~L~~~l~-------------d~~~~vr~~a~~aL~~~----~~----------~~ 190 (280)
T 1oyz_A 149 AFAISVINDK-----------ATIPLLINLLK-------------DPNGDVRNWAAFAININ----KY----------DN 190 (280)
T ss_dssp HHHHHTC--------------CCHHHHHHHHT-------------CSSHHHHHHHHHHHHHH----TC----------CC
T ss_pred HHHHHhcCCH-----------HHHHHHHHHHc-------------CCCHHHHHHHHHHHHhh----cc----------Cc
Confidence 9988865431 13344444333 12245777788887665 22 12
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCcc
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVL 687 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 687 (872)
+..++.+...+.+.++.+|..++.+++.+. . +..+|.+...+.+. +++..|+.+++.+..
T Consensus 191 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~---~-------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~------- 250 (280)
T 1oyz_A 191 SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK---D-------KRVLSVLCDELKKN---TVYDDIIEAAGELGD------- 250 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---C-------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---C-------HhhHHHHHHHhcCc---cHHHHHHHHHHhcCc-------
Confidence 456778888888889999999999998874 1 23556666666553 388888888887632
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCchhHHHHHH
Q 002877 688 PFCDGIMSLLLNALSNSQLNRSVKPPILSCFG 719 (872)
Q Consensus 688 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~ 719 (872)
+..++.|...+.+.. +.+++..++..+.
T Consensus 251 ---~~~~~~L~~~l~~~~-~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 251 ---KTLLPVLDTMLYKFD-DNEIITSAIDKLK 278 (280)
T ss_dssp ---GGGHHHHHHHHTTSS-CCHHHHHHHHHHT
T ss_pred ---hhhhHHHHHHHhcCC-CcHHHHHHHHHhh
Confidence 245677777776543 4555555555554
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.20 E-value=2e-09 Score=116.36 Aligned_cols=381 Identities=10% Similarity=0.098 Sum_probs=216.9
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchh-HhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCC
Q 002877 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLA-PLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATG 447 (872)
Q Consensus 370 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~-~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 447 (872)
+|.+...+.++++..+..|+.++..++... +..+ .... ..+|.+++.|+++++.++..|+++|..++....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~--~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~---- 77 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD--ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT---- 77 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC--SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH----
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH----
Confidence 455666777888999999999999998643 2223 2233 7899999999999999999999999999863221
Q ss_pred ccccCcccH--HHHHHHHHHHhh-c-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhcc--------
Q 002877 448 FSVISPENL--QRILTVLLESIK-D-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADR-------- 515 (872)
Q Consensus 448 ~~~~~~~~~--~~~l~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~-------- 515 (872)
....+ ...++.|+..|. + ++.+++.|+++|.+++.. ++.-.......+|.|+..+..
T Consensus 78 ----~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-------~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~ 146 (457)
T 1xm9_A 78 ----NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-------DELKEELIADALPVLADRVIIPFSGWCDG 146 (457)
T ss_dssp ----HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-------SSTHHHHHHHHHHHHHHHTTHHHHTCC--
T ss_pred ----HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-------HHhHHHHHhccHHHHHHHHhccccccccC
Confidence 11111 234788888888 5 899999999999999964 121122344888889888831
Q ss_pred CCC-----cchhHHHHHHHHHHHHHhcCCCcccHHHHH--HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHH
Q 002877 516 TDV-----GGSKLRSAAYETLNEVVRCSNITETSQIIA--ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQV 588 (872)
Q Consensus 516 ~~~-----~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 588 (872)
... .+..+...+.++|..+... + +......+ ..+|.++..+........
T Consensus 147 ~~~~~~e~~~~~v~~~a~~aL~nLs~~-~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~---------------------- 202 (457)
T 1xm9_A 147 NSNMSREVVDPEVFFNATGCLRNLSSA-D-AGRQTMRNYSGLIDSLMAYVQNCVAASR---------------------- 202 (457)
T ss_dssp -------CCCHHHHHHHHHHHHHHTTS-H-HHHHHHTTSTTHHHHHHHHHHHHHHHTC----------------------
T ss_pred ccchhcccccHHHHHHHHHHHHHHccC-H-HHHHHHHHcCCCHHHHHHHHHhhccccC----------------------
Confidence 110 1234556888888888765 4 22222221 344555444442210000
Q ss_pred HHHHcCCCccchhhchhhHHHHHHHHHHHHc---c--CChh------H-----HHHHHHHHHHHHHHh------------
Q 002877 589 IIQKFSSTDATKSFILQTADQIMVLFLRVFA---C--RSST------V-----HEEAMLAIGALAYAT------------ 640 (872)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~--~~~~------v-----~~~a~~~l~~l~~~~------------ 640 (872)
... . .....+..+..+-. . .... . ......+++......
T Consensus 203 ----~~~------~---~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
T 1xm9_A 203 ----CDD------K---SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269 (457)
T ss_dssp ----TTC------T---THHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCC
T ss_pred ----Cch------H---HHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccc
Confidence 000 0 00111111111000 0 0000 0 001111221111000
Q ss_pred ---hhHHHh-hhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC---Cc-cccH--HHHHHHHHHHhcCCCCCCCC
Q 002877 641 ---GPEFAK-YMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD---KV-LPFC--DGIMSLLLNALSNSQLNRSV 710 (872)
Q Consensus 641 ---~~~~~~-~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~---~~-~~~~--~~i~~~l~~~l~~~~~~~~~ 710 (872)
.....- +-...++.+...+....++.++..|+++|+.++...+. .. ...+ ...+|.|+++|.++ +..+
T Consensus 270 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~--~~~v 347 (457)
T 1xm9_A 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG--NSDV 347 (457)
T ss_dssp CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS--CHHH
T ss_pred ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC--CHhH
Confidence 001111 12466777778887766678999999999999753321 11 0111 24578889999887 7788
Q ss_pred chhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhh
Q 002877 711 KPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPY 790 (872)
Q Consensus 711 ~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 790 (872)
+..++.+++.++.. +.....+ ...
T Consensus 348 ~~~A~~aL~nls~~--~~~~~~i-------------------------------~~~----------------------- 371 (457)
T 1xm9_A 348 VRSGASLLSNMSRH--PLLHRVM-------------------------------GNQ----------------------- 371 (457)
T ss_dssp HHHHHHHHHHHHTS--GGGHHHH-------------------------------HHH-----------------------
T ss_pred HHHHHHHHHHHhcC--HHHHHHH-------------------------------HHh-----------------------
Confidence 99999999998752 1111000 000
Q ss_pred HHHHHHHHHHHhcCCC----CCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Q 002877 791 AQHLLQFIELIFKDNH----RDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSD-DEQLKETAGWTQGM 865 (872)
Q Consensus 791 ~~~il~~l~~~~~~~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~-~~~~~~~a~~~~~~ 865 (872)
.++.+...+...+ .++++...++..++.++..-+. ........+.++.|... +.++ +++++..|.|.+..
T Consensus 372 ---~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L-~~~~~~~~i~~~A~~~L~~ 446 (457)
T 1xm9_A 372 ---VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINL-CRSSASPKAAEAARLLLSD 446 (457)
T ss_dssp ---THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHH-HHCTTCHHHHHHHHHHHHT
T ss_pred ---hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHH-HcCCCcHHHHHHHHHHHHH
Confidence 1111112222211 2356777888888887754433 33334566778888885 7777 99999999999876
Q ss_pred HH
Q 002877 866 IN 867 (872)
Q Consensus 866 ~~ 867 (872)
+.
T Consensus 447 ~~ 448 (457)
T 1xm9_A 447 MW 448 (457)
T ss_dssp TS
T ss_pred HH
Confidence 53
No 61
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.13 E-value=1.9e-09 Score=108.79 Aligned_cols=254 Identities=14% Similarity=0.106 Sum_probs=170.2
Q ss_pred hhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCC
Q 002877 321 SLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPT 400 (872)
Q Consensus 321 ~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~ 400 (872)
.-++.++..+... + +.+|..|..+|..+. .+..++.+...+.++++.+|..++.+|+.+....
T Consensus 23 ~~i~~L~~~L~~~-------~--~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~- 85 (280)
T 1oyz_A 23 LNDDELFRLLDDH-------N--SLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK- 85 (280)
T ss_dssp SCHHHHHHHTTCS-------S--HHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-
T ss_pred hhHHHHHHHHHcC-------C--HHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-
Confidence 3456666665421 1 678988888887664 2456677778888999999999999999986432
Q ss_pred ccchhHhHHhHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHH
Q 002877 401 IDKLAPLVHAGFDFLLN-AMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVC 478 (872)
Q Consensus 401 ~~~~~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~ 478 (872)
. .++.+++.+.+ .+.|+++.||..++++|+.+....+ .+.+.+++.+...+.| ++.||..|+
T Consensus 86 -~----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----------~~~~~~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 86 -K----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----------IYSPKIVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp -T----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----------GGHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred -c----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----------cccHHHHHHHHHHhhCCCHHHHHHHH
Confidence 2 23456666653 5689999999999999999985443 2456788889999998 999999999
Q ss_pred HHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Q 002877 479 GAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRL 558 (872)
Q Consensus 479 ~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l 558 (872)
.+++.+... ..++.+...+.. ++..+|..+..+++.+... . +..++.+...+
T Consensus 150 ~aL~~~~~~----------------~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~-~--------~~~~~~L~~~l 201 (280)
T 1oyz_A 150 FAISVINDK----------------ATIPLLINLLKD---PNGDVRNWAAFAININKYD-N--------SDIRDCFVEML 201 (280)
T ss_dssp HHHHTC-------------------CCHHHHHHHHTC---SSHHHHHHHHHHHHHHTCC-C--------HHHHHHHHHHT
T ss_pred HHHHhcCCH----------------HHHHHHHHHHcC---CCHHHHHHHHHHHHhhccC-c--------HHHHHHHHHHh
Confidence 999865421 135566666663 3466899999999887321 1 12334444333
Q ss_pred HHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHH
Q 002877 559 GQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAY 638 (872)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 638 (872)
. +....+|..++.+|+.+ +. +..++.+...+.+. .+|..+..+++.+..
T Consensus 202 ~-------------d~~~~vR~~A~~aL~~~----~~------------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 202 Q-------------DKNEEVRIEAIIGLSYR----KD------------KRVLSVLCDELKKN--TVYDDIIEAAGELGD 250 (280)
T ss_dssp T-------------CSCHHHHHHHHHHHHHT----TC------------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred c-------------CCCHHHHHHHHHHHHHh----CC------------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc
Confidence 2 12245777778877665 22 13455566667664 488888888887732
Q ss_pred HhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHH
Q 002877 639 ATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVG 676 (872)
Q Consensus 639 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~ 676 (872)
+..+|.|...+.+..+.++...++..+.
T Consensus 251 ----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 251 ----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp ----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 2456677777766555556666666553
No 62
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.13 E-value=4.2e-07 Score=110.13 Aligned_cols=563 Identities=12% Similarity=0.087 Sum_probs=295.2
Q ss_pred cHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhh---hHHHHH
Q 002877 146 LAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNE---MERNYI 222 (872)
Q Consensus 146 ~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~l 222 (872)
+...|..|-..|..+-+. ++ .+..+...+. +.+.+..+|..|+..|.+.+..-...+..+ ..++.+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~--p~-----~~~~~~~~L~----~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK--CP-----ICVPCGLRLA----EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH--CT-----THHHHHHHHT----STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC--ch-----HHHHHHHHHH----ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 556788887777665332 11 1222222221 222578999999999999875422222221 123345
Q ss_pred HHHHHHhhc---CCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhh
Q 002877 223 MKVVCETAK---SKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEF 299 (872)
Q Consensus 223 l~~l~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~ 299 (872)
++.+.+... +....+|...+.++..++..... ...+++++.++...+. ++..+..++.++..+++.-....
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~-- 168 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ-- 168 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC--
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc--
Confidence 555443321 14688999999999999876522 1123344444333333 34556667778888776422110
Q ss_pred cCCCCCCCCCC--chHHHHHhHHhhHHHHHHHHhccc----------CCcccCCCCcchhhhHHHHHHHHHhhcCC-cch
Q 002877 300 ENPETGDSDSP--NYHFIEKARSSLVPMLLETLLKQE----------EDQDQDDSIWNISMAGGTCLGLVARTVGD-EVV 366 (872)
Q Consensus 300 ~~~~~~~~~~~--~~~~~~~~l~~l~~~l~~~l~~~~----------~d~~~d~~~~~~r~~a~~~l~~l~~~~~~-~~~ 366 (872)
... ..+. ....+...++.+++.+...+...- .+.+..+..-.++..+.+++.....-.+- .+.
T Consensus 169 ---~~~-~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~ 244 (1204)
T 3a6p_A 169 ---TLP-PQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHIT 244 (1204)
T ss_dssp ---CSC-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH
T ss_pred ---chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHH
Confidence 000 0000 011223345566666666654310 00000000012344444444332222221 111
Q ss_pred h---chHHHHHhhccCCCcchHHHHHHHHHHhhcCCC-ccchhHhHH----hHHHHHHHhc--------CCCcHHHHHHH
Q 002877 367 P---LVMPFVEANIVKSDWRCREAATYAFGSVLEGPT-IDKLAPLVH----AGFDFLLNAM--------RDENNHVKDTT 430 (872)
Q Consensus 367 ~---~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~~~~l~----~l~~~l~~~l--------~d~~~~vr~~a 430 (872)
. .+++.+...+.+ ...|.+|+.||..++.... ++...+.+. ..+..+++.. .+.+..++...
T Consensus 245 ~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 245 AENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp TTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred hccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 1 256666655553 5678999999999987543 111111111 1122333332 33345667777
Q ss_pred HHHHHHHHhhccCCC-CCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHH
Q 002877 431 AWTLSRIFELLHCPA-TGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAE 508 (872)
Q Consensus 431 ~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~ 508 (872)
+.++..++....... ........+.+..+++.++....+ +..|...++.....+++.... .. .+.+.++++.+++.
T Consensus 323 ~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~-~~-~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 323 CQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEIL-SR-DPLLLAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTT-TT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccc-cc-cHHHHHHHHHHHHH
Confidence 776666653322100 000012445788999999998887 777777777777767765310 00 22345677777777
Q ss_pred HHHhhcc--CCC-cc---------------------hhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhh
Q 002877 509 LLRAADR--TDV-GG---------------------SKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLEL 564 (872)
Q Consensus 509 l~~~l~~--~~~-~~---------------------~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 564 (872)
+...+.+ ++. .+ .+.|....+.+..++...+ ....++ +.+.+.+.+.+.+..
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~---v~~~l~~~l~~~l~~ 476 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQM---AGEWLKYQLSTFLDA 476 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHH---HHHHHHHHHTCC---
T ss_pred HHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHH---HHHHHHHHHhhhhcc
Confidence 7332221 111 00 1345556666666665555 322222 222232222221111
Q ss_pred h--------------hcCcchhhhHHHHHHHHHHHHHHHHHHc---CCCccchhhch-hhHHHHHHHHHHHHccCChhHH
Q 002877 565 Q--------------IVSSDDREKQGDLQASLCGVLQVIIQKF---SSTDATKSFIL-QTADQIMVLFLRVFACRSSTVH 626 (872)
Q Consensus 565 ~--------------~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~v~ 626 (872)
. ..+... ...........++..+++.+ ...+ .+. ...+++++.++.. +..++.++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~s--~~~~~~ea~~~~leav~~~~~~~~e~~----~l~~~~~~~Ll~~ll~~-~~~~p~l~ 549 (1204)
T 3a6p_A 477 GSVNSCSAVGTGEGSLCSVFS--PSFVQWEAMTLFLESVITQMFRTLNRE----EIPVNDGIELLQMVLNF-DTKDPLIL 549 (1204)
T ss_dssp --------------CCSCSSS--HHHHHHHHHHHHHHHHHHHHHHHSCTT----CCCHHHHHHHHHHHHHC-CCSCHHHH
T ss_pred cccccccccccccccccCcCC--HHHHHHHHHHHHHHHHHHHHhcccccc----cccHHHHHHHHHHHHhC-CCCChHHH
Confidence 0 000000 11111223333444444433 1100 121 1234455443321 23477899
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhccc-----------chHhHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 002877 627 EEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNS-----------EEYQVCAITVGVVGDVCRALDDKVLPFCDGIMS 695 (872)
Q Consensus 627 ~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~ 695 (872)
..++.+++++...... -..+++.+++.|+..+.+. ...+++..|+.++..++..+++.+.||++++.+
T Consensus 550 ~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~ 628 (1204)
T 3a6p_A 550 SCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYN 628 (1204)
T ss_dssp HHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999988765542 2457888888888776541 245799999999999999999999999999999
Q ss_pred HHHHHhcCCC-CCCCCchhHHHHHHHHHHhhcc--chhhhHHHHHHHHHHHHH
Q 002877 696 LLLNALSNSQ-LNRSVKPPILSCFGDIALAIGV--HFEKYVPHALQMMQEAAK 745 (872)
Q Consensus 696 ~l~~~l~~~~-~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~~~ 745 (872)
.+-..+.... ....=+.....+++.++...++ .-..|+..+++.+.+...
T Consensus 629 ~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 629 HVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999887653 3333445666777777554433 234578888888887654
No 63
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.12 E-value=3.1e-09 Score=105.52 Aligned_cols=231 Identities=15% Similarity=0.164 Sum_probs=168.1
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC
Q 002877 223 MKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN 301 (872)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 301 (872)
++.+.+.+.+++++++..++.++..+....++....... ..++.++..+.+.+++++..++..+..++.....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE------ 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH------
Confidence 456677778888999999999999998766544333333 4677788888888999999999999888764221
Q ss_pred CCCCCCCCCchHHHHHhHH-hhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC---cc-hhchHHHHHhh
Q 002877 302 PETGDSDSPNYHFIEKARS-SLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD---EV-VPLVMPFVEAN 376 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~~ 376 (872)
....... ..++.+...+... ...++..+..+|..++...++ .+ ....++.+.+.
T Consensus 78 ------------~~~~~~~~~~i~~l~~ll~~~---------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 78 ------------AIKAIVDAGGVEVLVKLLTST---------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp ------------HHHHHHHTTHHHHHHHHTTCS---------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ------------HHHHHHHCCCHHHHHHHHcCC---------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 1111112 4677777776531 157899999999998853321 11 12357778888
Q ss_pred ccCCCcchHHHHHHHHHHhhcCCCccchhHhH-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCccc
Q 002877 377 IVKSDWRCREAATYAFGSVLEGPTIDKLAPLV-HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPEN 455 (872)
Q Consensus 377 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 455 (872)
+.++++..|..++.+++.++.... ....... ...++.+++.+.++++.+|..++++|++++...+. .....
T Consensus 137 l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~l 208 (252)
T 4hxt_A 137 LTSTDSEVQKEAARALANIASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-------AIKAI 208 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH-------HHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH-------HHHHH
Confidence 888999999999999999987642 3222222 37899999999999999999999999999863321 11111
Q ss_pred -HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 456 -LQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 456 -~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
-..+++.+...+.+ ++.++..|++++.+++...
T Consensus 209 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 209 VDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 12467888888888 9999999999999999875
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.11 E-value=5.2e-10 Score=111.22 Aligned_cols=240 Identities=15% Similarity=0.180 Sum_probs=166.4
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCc
Q 002877 370 MPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGF 448 (872)
Q Consensus 370 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
++.+.+.+.++++..|..++.+++.++.... +....... ..++.+++.+.++++.+|..++++|+.++.....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----- 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE----- 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH-----
Confidence 4666777778889999999999999987652 33333333 7899999999999999999999999999854221
Q ss_pred cccCccc-HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh-HHHHHHHHHHhhccCCCcchhHHH
Q 002877 449 SVISPEN-LQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY-LTSIIAELLRAADRTDVGGSKLRS 525 (872)
Q Consensus 449 ~~~~~~~-~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~-~~~il~~l~~~l~~~~~~~~~vr~ 525 (872)
..... -...++.++..+.+ ++.++..|++++.+++... +...... -...++.++..+... +..++.
T Consensus 78 --~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~~l~~~---~~~~~~ 146 (252)
T 4hxt_A 78 --AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP------DEAIKAIVDAGGVEVLVKLLTST---DSEVQK 146 (252)
T ss_dssp --HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC------HHHHHHHHHTTHHHHHHHHTTCS---CHHHHH
T ss_pred --HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC------HHHHHHHHHCCCHHHHHHHHcCC---CHHHHH
Confidence 00111 12468888888888 9999999999999998542 1111111 125688888888743 366799
Q ss_pred HHHHHHHHHHhcCCCcccHHHH-HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhch
Q 002877 526 AAYETLNEVVRCSNITETSQII-AELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFIL 604 (872)
Q Consensus 526 ~a~~al~~l~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 604 (872)
.+..++..+....+ ....... ...+|.+++.+.. ....++..++.++..++..-.. ...
T Consensus 147 ~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~-------------~~~~v~~~a~~~L~~l~~~~~~------~~~ 206 (252)
T 4hxt_A 147 EAARALANIASGPD-EAIKAIVDAGGVEVLVKLLTS-------------TDSEVQKEAARALANIASGPTS------AIK 206 (252)
T ss_dssp HHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTC-------------SCHHHHHHHHHHHHHHTTSBHH------HHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHCcCHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHcCCHH------HHH
Confidence 99999999987644 2222222 2456666655542 1246788889999888642111 121
Q ss_pred hhH-HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHh
Q 002877 605 QTA-DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAK 646 (872)
Q Consensus 605 ~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 646 (872)
... ...++.+...+.+.++.+++.|+.+++.++...+....+
T Consensus 207 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 207 AIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHH 249 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC--
T ss_pred HHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCccccc
Confidence 222 257889999999999999999999999998866544333
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.10 E-value=5.1e-08 Score=111.26 Aligned_cols=311 Identities=10% Similarity=0.107 Sum_probs=223.4
Q ss_pred hhhHHHHHHHHHhhc-CCcch-hchHHHHHhhccCCCcchHHHHHHHHHHhhcCCC-ccchhHhHHhHHHHHHHhcCCCc
Q 002877 347 SMAGGTCLGLVARTV-GDEVV-PLVMPFVEANIVKSDWRCREAATYAFGSVLEGPT-IDKLAPLVHAGFDFLLNAMRDEN 423 (872)
Q Consensus 347 r~~a~~~l~~l~~~~-~~~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~~~~l~~l~~~l~~~l~d~~ 423 (872)
+..++..+..+...- +.... ..+...+...+.+.... ++|+.+++.+++... .....+|+-.++|.++..+.|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 344455555554422 22222 23555566665553222 999999999996543 13568898899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh
Q 002877 424 NHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY 501 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~ 501 (872)
..||.+|..++..+...++. .-...++|.|+..+.. .+..+..|+.++..+++.. +..+...
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~------~~~~~~~ 172 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNP----------VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA------KDQVALR 172 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCG----------GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh------HHHHHHh
Confidence 99999999999999987764 3458889999998875 6899999999999999987 7788889
Q ss_pred HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHH
Q 002877 502 LTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQAS 581 (872)
Q Consensus 502 ~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 581 (872)
++.++|.+..++. | ....|+.++.+++..++...++.+..++++.++ +.+.+- + .
T Consensus 173 ~~~~~p~~~~~~~--d-~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~----~~~~~p-----------~-------~ 227 (986)
T 2iw3_A 173 MPELIPVLSETMW--D-TKKEVKAAATAAMTKATETVDNKDIERFIPSLI----QCIADP-----------T-------E 227 (986)
T ss_dssp HHHHHHHHHHHTT--C-SSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH----HHHHCT-----------T-------H
T ss_pred ccchhcchHhhcc--c-CcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH----HHhcCh-----------h-------h
Confidence 9999999999998 3 346789999999999999887455555544444 333321 1 1
Q ss_pred HHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhh--hHHHhhhHHHHHHHHhhh
Q 002877 582 LCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATG--PEFAKYMPEFYQYLQMGL 659 (872)
Q Consensus 582 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l 659 (872)
+-+++..+ +..-+-.+.-.|.+.-+.|.|.+.|......+++.+...+.++++-.. ....+|++.++|.+.+..
T Consensus 228 ~~~~~~~l----~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~ 303 (986)
T 2iw3_A 228 VPETVHLL----GATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNF 303 (986)
T ss_dssp HHHHHHHH----TTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHT
T ss_pred hHHHHHHh----hcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHh
Confidence 12333333 222111113445666788899999988888899999999999988654 478899999999999988
Q ss_pred cccchHhHHHHHHHHHHHHHHHhcC----Cc-----cccHHHHHHHHHHHhcCC
Q 002877 660 QNSEEYQVCAITVGVVGDVCRALDD----KV-----LPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 660 ~~~~~~~v~~~a~~~l~~l~~~~~~----~~-----~~~~~~i~~~l~~~l~~~ 704 (872)
....+|++|..|-.++..+.+..+. .+ ......+...+...+...
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDE 357 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTS
T ss_pred hccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhccc
Confidence 8777889998888888888766542 11 123455666666666654
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.10 E-value=1.2e-09 Score=108.61 Aligned_cols=230 Identities=14% Similarity=0.142 Sum_probs=165.2
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhc
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFE 300 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 300 (872)
.++.+...+++++++++..++.++..++....+.....+. ..++.++..+++.+++++..|+..+..++.....
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----- 87 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----- 87 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-----
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-----
Confidence 3455667778889999999999998777654443333333 4678888888888899999999999998863221
Q ss_pred CCCCCCCCCCchHHHHHhHH-hhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCc---c-hhchHHHHHh
Q 002877 301 NPETGDSDSPNYHFIEKARS-SLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDE---V-VPLVMPFVEA 375 (872)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~ 375 (872)
....... ..+|.+...+...+ +.++..|..+|..++...+.. + ....++.+.+
T Consensus 88 -------------~~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 145 (252)
T 4db8_A 88 -------------QIQAVIDAGALPALVQLLSSPN---------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145 (252)
T ss_dssp -------------HHHHHHHTTHHHHHHHGGGCSC---------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -------------HHHHHHHcCCHHHHHHHHcCCC---------HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHH
Confidence 1122222 46777777775411 678999999999887654321 1 1236788888
Q ss_pred hccCCCcchHHHHHHHHHHhhcCCCccchhHhH-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcc
Q 002877 376 NIVKSDWRCREAATYAFGSVLEGPTIDKLAPLV-HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPE 454 (872)
Q Consensus 376 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 454 (872)
.+.++++..|..++.+++.++.... ......+ ..+++.+++.+.++++.+|..++++|++++...+. ....
T Consensus 146 lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~ 217 (252)
T 4db8_A 146 LLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-------QKQA 217 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH-------HHHH
Confidence 8889999999999999999997642 3222223 37899999999999999999999999999843321 1111
Q ss_pred cH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHH
Q 002877 455 NL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQ 486 (872)
Q Consensus 455 ~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (872)
.. ...++.+...+.+ ++.++..|+++|.+++.
T Consensus 218 ~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 218 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 11 2367778888887 99999999999988753
No 67
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.08 E-value=1.6e-08 Score=109.71 Aligned_cols=356 Identities=10% Similarity=0.056 Sum_probs=221.6
Q ss_pred hhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCC
Q 002877 366 VPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCP 444 (872)
Q Consensus 366 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 444 (872)
...-++.+.+.+.+++...+..|..++..++.... +.-..... ..+|.+++.|.++++.++..|+++|..++.....
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~- 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ- 123 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH-
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH-
Confidence 34456777777788888888888899999986542 22122222 6889999999999999999999999999853111
Q ss_pred CCCccccCcccH--HHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhcc-----
Q 002877 445 ATGFSVISPENL--QRILTVLLESIKD--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADR----- 515 (872)
Q Consensus 445 ~~~~~~~~~~~~--~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~----- 515 (872)
.....+ ...++.|+..|.. +..+++.++.+|.+++.. +..-.......++.|+..+..
T Consensus 124 ------~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-------~~~k~~I~~~alp~Lv~LL~~p~sg~ 190 (584)
T 3l6x_A 124 ------DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-------DSIKMEIVDHALHALTDEVIIPHSGW 190 (584)
T ss_dssp ------HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-------GGGHHHHHHHTHHHHHHHTHHHHHCC
T ss_pred ------HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-------chhhHHHHhccHHHHHHHHhcccccc
Confidence 011111 2457888888875 678899999999999753 211122234456666665410
Q ss_pred ----------CCCcchhHHHHHHHHHHHHHhcCCCcccHHHH--HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHH
Q 002877 516 ----------TDVGGSKLRSAAYETLNEVVRCSNITETSQII--AELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLC 583 (872)
Q Consensus 516 ----------~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (872)
.+..+..++..+..+|..+....+ ....... ..+++.|+..+...+.... .....+..++
T Consensus 191 ~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~-~~R~~i~~~~Gli~~LV~~L~~~~~~~~-------~~~~~~enav 262 (584)
T 3l6x_A 191 EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS-EARRKLRECDGLVDALIFIVQAEIGQKD-------SDSKLVENCV 262 (584)
T ss_dssp C----------CCCCHHHHHHHHHHHHHHTSSCH-HHHHHHHHSTTHHHHHHHHHHHHHHTTC-------CSCHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCcHHHHHHHHHHhhcccC-------ccHHHHHHHH
Confidence 011235778899999999986543 2122222 2466778777775432110 1112446667
Q ss_pred HHHHHHHHHcCCCc-------------------cchhhchh-hHHHHHHHHHHHHcc-CChhHHHHHHHHHHHHHHHhh-
Q 002877 584 GVLQVIIQKFSSTD-------------------ATKSFILQ-TADQIMVLFLRVFAC-RSSTVHEEAMLAIGALAYATG- 641 (872)
Q Consensus 584 ~~l~~l~~~~~~~~-------------------~~~~~~~~-~~~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~- 641 (872)
.+|.++......+. .....+.. +-+..++.++.++.. .+..+++.|..+|..++..-+
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 77777654421100 00001111 124667888888854 478999999999999975321
Q ss_pred --hHHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCC------CCCCc
Q 002877 642 --PEFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQL------NRSVK 711 (872)
Q Consensus 642 --~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~------~~~~~ 711 (872)
..+...+ ...+|.|...|... +..++..|+++|+.++...... ...-...++.|+..|.+++. ..++.
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTV 420 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHH
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHH
Confidence 1222222 46789999998875 4569999999999998754321 22245789999999987631 12345
Q ss_pred hhHHHHHHHHHHhhccchhhhHH-HHHHHHHHHHHh
Q 002877 712 PPILSCFGDIALAIGVHFEKYVP-HALQMMQEAAKA 746 (872)
Q Consensus 712 ~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~~~~ 746 (872)
..++.++++|+....+......+ ..+|.|...++.
T Consensus 421 ~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 421 ISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC
Confidence 56777777776543333222222 566777766553
No 68
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.02 E-value=1.3e-07 Score=102.22 Aligned_cols=357 Identities=13% Similarity=0.081 Sum_probs=213.4
Q ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 002877 133 IRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTN 212 (872)
Q Consensus 133 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 212 (872)
++.++..++++ ++..+..|+.+|..++..-.+-.. .-.-...+|.+.+.+.+ ++..++..|..+|.++...-..
T Consensus 4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~-~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~- 77 (457)
T 1xm9_A 4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQ-QVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVFRSTT- 77 (457)
T ss_dssp HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHH-HHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHH-
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHH-HHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHH-
Confidence 67888889888 888999999999999864321000 11224468888889987 6889999999999997531000
Q ss_pred hhhhhHH-HHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhhhhhhHH-hHHHHHHHHHHHh--------cC--------
Q 002877 213 FQNEMER-NYIMKVVCETAK-SKEVEIRQAAFECLVSIASTYYEVLEP-YMQTLFELTSNAV--------KG-------- 273 (872)
Q Consensus 213 ~~~~~~~-~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~l~~~~~~~~--------~~-------- 273 (872)
.+.... .-.++.+.+++. +++++++..++.+|..+... ++ ... .+...++.++..+ .+
T Consensus 78 -~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~ 154 (457)
T 1xm9_A 78 -NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp -HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC---------C
T ss_pred -HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhccc
Confidence 010000 013567777787 78999999999999999865 22 221 1223444444444 11
Q ss_pred CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH--HhhHHHHHHHHhcccCCcccCCCCcchhhhHH
Q 002877 274 DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKAR--SSLVPMLLETLLKQEEDQDQDDSIWNISMAGG 351 (872)
Q Consensus 274 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~ 351 (872)
.+.++...|...+..++.... ..+... +..+|.|...+.....+.+.+ ......+.
T Consensus 155 ~~~~v~~~a~~aL~nLs~~~~-------------------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~---~~~~e~a~ 212 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSADA-------------------GRQTMRNYSGLIDSLMAYVQNCVAASRCD---DKSVENCM 212 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHH-------------------HHHHHTTSTTHHHHHHHHHHHHHHHTCTT---CTTHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHH-------------------HHHHHHHcCCCHHHHHHHHHhhccccCCc---hHHHHHHH
Confidence 245666788888888876521 111122 135555555554210000000 11222223
Q ss_pred HHHHHHHhh----------------------------cC----------------------C---cc-hhchHHHHHhhc
Q 002877 352 TCLGLVART----------------------------VG----------------------D---EV-VPLVMPFVEANI 377 (872)
Q Consensus 352 ~~l~~l~~~----------------------------~~----------------------~---~~-~~~l~~~l~~~l 377 (872)
.+|..++.. ++ + .+ -+..++.+...+
T Consensus 213 ~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL 292 (457)
T 1xm9_A 213 CVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292 (457)
T ss_dssp HHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHH
T ss_pred HHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHH
Confidence 333333210 00 0 00 011233344444
Q ss_pred c-CCCcchHHHHHHHHHHhhcCCCcc--ch-hHhH--HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 002877 378 V-KSDWRCREAATYAFGSVLEGPTID--KL-APLV--HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVI 451 (872)
Q Consensus 378 ~-~~~~~~r~aal~~l~~i~~~~~~~--~~-~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 451 (872)
. +.+...+++++.+|+.++.+..+. .+ ...+ ...+|.+++.|.+++..++..|+|+|+.++..-..
T Consensus 293 ~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~-------- 364 (457)
T 1xm9_A 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-------- 364 (457)
T ss_dssp HHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--------
T ss_pred hhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH--------
Confidence 3 345788999999999999765311 12 2223 36789999999999999999999999999863221
Q ss_pred CcccHHHHHHHHHHHhhc-C------hHHHHHHHHHHHHHHHhhccCCCCCCCchhhH--HHHHHHHHHhhccCCCcchh
Q 002877 452 SPENLQRILTVLLESIKD-A------PNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL--TSIIAELLRAADRTDVGGSK 522 (872)
Q Consensus 452 ~~~~~~~~l~~l~~~l~d-~------~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~ 522 (872)
....-...++.|+..|.. + +.+...+++++.+++... ......+ ...++.+...+.+.. +..
T Consensus 365 ~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~-------~~~~~~i~~~g~l~~L~~L~~~~~--~~~ 435 (457)
T 1xm9_A 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-------PQLAKQYFSSSMLNNIINLCRSSA--SPK 435 (457)
T ss_dssp HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-------THHHHHHCCHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC-------HHHHHHHHHcCCHHHHHHHHcCCC--cHH
Confidence 112224577888888875 3 257788999999988542 1222222 267778888776431 356
Q ss_pred HHHHHHHHHHHHHhc
Q 002877 523 LRSAAYETLNEVVRC 537 (872)
Q Consensus 523 vr~~a~~al~~l~~~ 537 (872)
++..|...|..+...
T Consensus 436 i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 436 AAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHcc
Confidence 688888888776644
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.02 E-value=6.4e-07 Score=102.33 Aligned_cols=354 Identities=10% Similarity=0.113 Sum_probs=244.5
Q ss_pred HHHHhhcCCChhHhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCc-cccchh
Q 002877 96 LLLRTLASPVPEARHTSAQVIAKIASIEIPQ--KQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISH-QDLVQD 172 (872)
Q Consensus 96 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~--~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~~l~~~ 172 (872)
.+++.+...+..=+..++..++.+....... -.| .++..+...+.+. ... ++|+..++.+|+..+. ..+ .+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k--~~~--~~a~~~~~~~~~~~~~~~~~-e~ 91 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDK--KTA--ANAMQAVAHIANQSNLSPSV-EP 91 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSH--HHH--HHHHHHHHHHTCTTTCCTTT-HH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhcc--CCH--HHHHHHHHHHHHhcCCCCCc-cc
Confidence 3556565544455667777777776644322 244 6888888888765 333 9999999999988742 234 67
Q ss_pred hHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHh
Q 002877 173 EVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKS-KEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 173 ~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~l~~l~~~ 251 (872)
++-.++|.++..+.| ....||.+|-.+...++..+..+ . ...+++.++..+.+ ..+..+..++.++..+++.
T Consensus 92 ~~~~~~~~~~~~~~d--k~~~v~~aa~~~~~~~~~~~~~~----a-~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 92 YIVQLVPAICTNAGN--KDKEIQSVASETLISIVNAVNPV----A-IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHTTHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSCGG----G-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhCCHH----H-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 777789999999988 77899999999999887655442 1 24477888777753 4799999999999999998
Q ss_pred hhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHh
Q 002877 252 YYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLL 331 (872)
Q Consensus 252 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 331 (872)
.++.+...+++++|.+...+.|..++++.+|...+..+|..-. +.-+...+|.++.+|.
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~---------------------n~d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD---------------------NKDIERFIPSLIQCIA 223 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC---------------------CTTTGGGHHHHHHHHH
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC---------------------CcchhhhHHHHHHHhc
Confidence 8999999999999999999999999999999988888886411 1112346677777776
Q ss_pred cccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhH
Q 002877 332 KQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAG 411 (872)
Q Consensus 332 ~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l 411 (872)
++++ + -+|+..++... .. ..--.|.+.-+
T Consensus 224 ~p~~----------~----~~~~~~l~~~t------------------------------------fv-~~v~~~~l~~~ 252 (986)
T 2iw3_A 224 DPTE----------V----PETVHLLGATT------------------------------------FV-AEVTPATLSIM 252 (986)
T ss_dssp CTTH----------H----HHHHHHHTTCC------------------------------------CC-SCCCHHHHHHH
T ss_pred Chhh----------h----HHHHHHhhcCe------------------------------------eE-eeecchhHHHH
Confidence 5421 1 22344333221 00 12334667788
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhc
Q 002877 412 FDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYE 489 (872)
Q Consensus 412 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (872)
+|.|...|.+....+++.++..+.++++...+ +....++++.++|.+-+.... +|.+|+-|-.++..+.+...
T Consensus 253 ~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~-----~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 253 VPLLSRGLNERETGIKRKSAVIIDNMCKLVED-----PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC-----HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccCcchhheeeEEEEcchhhhcCC-----HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999998877 456667888888888777665 99999999999998877643
Q ss_pred c-CCC--CCCCchhhHHHHHHHHHHhhccCCC--cchhHHHHHHHHHHHHHhcCC
Q 002877 490 D-AGP--SSSLLSPYLTSIIAELLRAADRTDV--GGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 490 ~-~~~--~~~~l~~~~~~il~~l~~~l~~~~~--~~~~vr~~a~~al~~l~~~~~ 539 (872)
. .+. .+.....-...+...+...+..... ....+...+......++..-.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 382 (986)
T 2iw3_A 328 VGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERI 382 (986)
T ss_dssp CBTTTBCCCCCCTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccc
Confidence 2 100 0111122344555555555542211 111224455555566655443
No 70
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.00 E-value=9.5e-09 Score=101.92 Aligned_cols=231 Identities=16% Similarity=0.145 Sum_probs=163.5
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhH
Q 002877 178 LTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLE 257 (872)
Q Consensus 178 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (872)
++.+...+.+ ++.++|..|+.+|..++.. ...........-.++.+.+.+++++++++..++.++..+....+..-.
T Consensus 14 ~~~~~~~L~s--~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 14 LPQMTQQLNS--DDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp HHHHHHHHHS--SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4555666666 5678999999999876654 111111111112677888889888999999999999999865444333
Q ss_pred HhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhH-HhhHHHHHHHHhcccC
Q 002877 258 PYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKAR-SSLVPMLLETLLKQEE 335 (872)
Q Consensus 258 ~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~ 335 (872)
.... ..++.++..+.+++++++..|+..+..++..... ...... ...+|.+...+...
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------------------~~~~~~~~~~i~~L~~lL~~~-- 150 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE------------------QIQAVIDAGALPALVQLLSSP-- 150 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH------------------HHHHHHHTTHHHHHHHGGGCS--
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch------------------HHHHHHHCCCHHHHHHHHhCC--
Confidence 3222 3677888888889999999999999998765221 101122 24777777777432
Q ss_pred CcccCCCCcchhhhHHHHHHHHHhhcCCc----chhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-h
Q 002877 336 DQDQDDSIWNISMAGGTCLGLVARTVGDE----VVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-A 410 (872)
Q Consensus 336 d~~~d~~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~ 410 (872)
.+.++..+..+|..++...++. .-...++.+...+.++++..|+.++.+|+.++.+. +......+. .
T Consensus 151 -------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g 222 (252)
T 4db8_A 151 -------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAG 222 (252)
T ss_dssp -------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCC
Confidence 1678999999999988643211 11346778888888889999999999999998654 233333344 6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 002877 411 GFDFLLNAMRDENNHVKDTTAWTLSRIFE 439 (872)
Q Consensus 411 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 439 (872)
+++.+.+.+.++++.+|..|+++|++++.
T Consensus 223 ~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 223 ALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999998764
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.92 E-value=1.6e-06 Score=94.15 Aligned_cols=364 Identities=12% Similarity=0.061 Sum_probs=214.4
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHh--hhhhhh
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDE--EIELQE 298 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~--~~~~~~ 298 (872)
-++.+.+.+.+++++++..+...+..++....+.-..... ..++.++..+.+.+++++..|...+..++.. ...
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n--- 125 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN--- 125 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH---
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH---
Confidence 3566677788889999999999998887543322111111 3567788888999999999999999888752 110
Q ss_pred hcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC--CcchhchHHHHHhh
Q 002877 299 FENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG--DEVVPLVMPFVEAN 376 (872)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~ 376 (872)
...+.. ...+|.++..|.... + ..++..+..+|..++..-. ..+....++.+.+.
T Consensus 126 -------------k~~I~~--~GaIp~LV~LL~s~~-~-------~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~L 182 (584)
T 3l6x_A 126 -------------KIAIKN--CDGVPALVRLLRKAR-D-------MDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDE 182 (584)
T ss_dssp -------------HHHHHH--TTHHHHHHHHHHHCC-S-------HHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHH
T ss_pred -------------HHHHHH--cCCHHHHHHHHcCCC-C-------HHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHH
Confidence 011111 146677777776421 1 3466777778888876321 11222223333332
Q ss_pred c-----------------cC-CCcchHHHHHHHHHHhhcCCCccchhHhH--HhHHHHHHHhcC------CCcHHHHHHH
Q 002877 377 I-----------------VK-SDWRCREAATYAFGSVLEGPTIDKLAPLV--HAGFDFLLNAMR------DENNHVKDTT 430 (872)
Q Consensus 377 l-----------------~~-~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~l~~~l~~~l~------d~~~~vr~~a 430 (872)
+ .+ ++..+++.+..+|..++.... +.-.... ..+++.|+..+. +.+...++.+
T Consensus 183 L~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~-~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS-EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp THHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCH-HHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 2 11 234688889999999987531 2111111 134455555543 3566788899
Q ss_pred HHHHHHHHhhccCCC-----CC-------------ccccCc-ccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhhc
Q 002877 431 AWTLSRIFELLHCPA-----TG-------------FSVISP-ENLQRILTVLLESIKD--APNVAEKVCGAIYYLAQGYE 489 (872)
Q Consensus 431 ~~~l~~l~~~~~~~~-----~~-------------~~~~~~-~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~~~~~ 489 (872)
+++|.+++.....+. +. .+.... -+-+.+++.++..+.+ ++.++++|+++|.+++..-.
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 999988775432100 00 000000 1224667888888864 89999999999999985410
Q ss_pred cCCCCCCCchhhH--HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhc
Q 002877 490 DAGPSSSLLSPYL--TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIV 567 (872)
Q Consensus 490 ~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 567 (872)
. ....+...+ ...++.|+..+...+ ..++..+..+|..+..... .. .
T Consensus 342 ~---~~~~~~~~v~~~~glp~Lv~LL~s~~---~~v~~~A~~aL~nLs~~~~-~~--~---------------------- 390 (584)
T 3l6x_A 342 T---YGRYIRSALRQEKALSAIADLLTNEH---ERVVKAASGALRNLAVDAR-NK--E---------------------- 390 (584)
T ss_dssp H---HHHHHHHHHTSHHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHTTCS-CH--H----------------------
T ss_pred c---ccHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhCChh-HH--H----------------------
Confidence 0 000111112 356788888886433 4567788888888776543 00 0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHHHHH
Q 002877 568 SSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR--------SSTVHEEAMLAIGALAYA 639 (872)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~v~~~a~~~l~~l~~~ 639 (872)
.+ -...++.|+.+|.+. ...+...++.++++++..
T Consensus 391 ----------------------------------~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~ 433 (584)
T 3l6x_A 391 ----------------------------------LI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433 (584)
T ss_dssp ----------------------------------HH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------------HH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence 00 112344444455443 245677777888877654
Q ss_pred hhhHHHhhhH-HHHHHHHhhhccc-chHhHHHHHHHHHHHHHH
Q 002877 640 TGPEFAKYMP-EFYQYLQMGLQNS-EEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 640 ~~~~~~~~l~-~i~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~ 680 (872)
.........+ ..+|.|...+.+. ....+...|+++|..+..
T Consensus 434 ~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 434 NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 3333332222 5788888888764 345689999999998864
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.91 E-value=2.9e-08 Score=105.24 Aligned_cols=304 Identities=11% Similarity=0.077 Sum_probs=188.9
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHH-hHH----------HHHHHhcCCCc-------HHHHH-------HHHHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVH-AGF----------DFLLNAMRDEN-------NHVKD-------TTAWTLSR 436 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~----------~~l~~~l~d~~-------~~vr~-------~a~~~l~~ 436 (872)
...|.-|.++|..|+.+.. +....... .++ +.+++.+..+. ..|+. .|.|+|++
T Consensus 96 ~~~~~~a~~al~ni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n 174 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCc-chhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence 5788999999999998763 44332111 122 33444443221 11655 88999998
Q ss_pred HHhhccCCCCCccccCcccH--HHHHHHHHHHhh----------c--ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH
Q 002877 437 IFELLHCPATGFSVISPENL--QRILTVLLESIK----------D--APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL 502 (872)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~----------d--~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~ 502 (872)
++.. .+ ....+ ...++.|+..+. + ++.++..|+++|.+++..- +.....+
T Consensus 175 ls~~-~e--------~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~-------~~~k~~i 238 (458)
T 3nmz_A 175 LSFD-EE--------HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD-------VANKATL 238 (458)
T ss_dssp HTTS-HH--------HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC-------HHHHHHH
T ss_pred hcCC-HH--------HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC-------cccHHHH
Confidence 8643 11 11222 135566666652 1 5778999999999999652 1112222
Q ss_pred ---HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCccc-HHHHH-HHHHHHHHHHHHHHhhhhcCcchhhhHHH
Q 002877 503 ---TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITET-SQIIA-ELLPAIMGRLGQTLELQIVSSDDREKQGD 577 (872)
Q Consensus 503 ---~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~-~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 577 (872)
...+|.|+..+... +..++..+.++|..+..... ... ..+.+ ..+|.+++.+... ....
T Consensus 239 ~~~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~~GaI~~LV~lLl~s------------~~~~ 302 (458)
T 3nmz_A 239 CSMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEV------------KKES 302 (458)
T ss_dssp HHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHTSSCC-HHHHHHHHHTTHHHHHHHHHTTC------------CSHH
T ss_pred HHcCCcHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCCHHHHHHHHhcC------------CCHH
Confidence 46789999999743 36679999999999875422 222 22222 4677777765421 1134
Q ss_pred HHHHHHHHHHHHHHHcCCCccchhhchhhH--HHHHHHHHHHHccCCh----hHHHHHHHHHHHHHHH---hhhHHHhhh
Q 002877 578 LQASLCGVLQVIIQKFSSTDATKSFILQTA--DQIMVLFLRVFACRSS----TVHEEAMLAIGALAYA---TGPEFAKYM 648 (872)
Q Consensus 578 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~----~v~~~a~~~l~~l~~~---~~~~~~~~l 648 (872)
++..++.++.++...... .-.... ...++.|..++...+. .+++.+..+|..++.. ..+......
T Consensus 303 v~~~A~~aL~nLs~~~~~------nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 376 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTE------NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376 (458)
T ss_dssp HHHHHHHHHHHHHHHCHH------HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHH------HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 556777788877653211 111111 2467788888876643 4889999999998762 222222222
Q ss_pred -HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhc
Q 002877 649 -PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFC-DGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIG 726 (872)
Q Consensus 649 -~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 726 (872)
...+|.|...+.+. +..++..|+++|+.++....+...... ...++.|+.+|.++ +..+++.+..++.+|+...+
T Consensus 377 ~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~--~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 377 ENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTCCS
T ss_pred HcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCCH
Confidence 25788888888765 456999999999999742222111112 35689999999877 78899999999999987654
Q ss_pred c
Q 002877 727 V 727 (872)
Q Consensus 727 ~ 727 (872)
.
T Consensus 454 ~ 454 (458)
T 3nmz_A 454 A 454 (458)
T ss_dssp C
T ss_pred h
Confidence 3
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.91 E-value=7.5e-08 Score=102.03 Aligned_cols=331 Identities=9% Similarity=0.072 Sum_probs=204.0
Q ss_pred hhHHHHHHHHhcccCCcc---cCCCCcchhhhHHHHHHHHHhhcCCcchhc----hH----------HHHHhhccCC---
Q 002877 321 SLVPMLLETLLKQEEDQD---QDDSIWNISMAGGTCLGLVARTVGDEVVPL----VM----------PFVEANIVKS--- 380 (872)
Q Consensus 321 ~l~~~l~~~l~~~~~d~~---~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~----l~----------~~l~~~l~~~--- 380 (872)
..+|.+++.+...+.+.- +..+.-.++..|+.+|..++..-++..... ++ +.+.+.+.+.
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 578888888874322100 000113678888999999998877554321 11 2222223322
Q ss_pred -C---cchHH-------HHHHHHHHhhcCCCccchhHhH-H-hHHHHHHHhcC-----------CCcHHHHHHHHHHHHH
Q 002877 381 -D---WRCRE-------AATYAFGSVLEGPTIDKLAPLV-H-AGFDFLLNAMR-----------DENNHVKDTTAWTLSR 436 (872)
Q Consensus 381 -~---~~~r~-------aal~~l~~i~~~~~~~~~~~~l-~-~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~ 436 (872)
+ -.+++ .|+.+|+.++.. ...+..+ . ..++.|+..+. +.++.++..|+|+|..
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~---~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFD---EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTS---HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCC---HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 1 11344 788999998654 2223322 2 67777777773 2457899999999999
Q ss_pred HHhhccCCCCCccccCccc---HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH--HHHHHHHH
Q 002877 437 IFELLHCPATGFSVISPEN---LQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL--TSIIAELL 510 (872)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~---~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~il~~l~ 510 (872)
++..-.. .... ....++.|+..|.+ ++.++..|+++|.+++... .+.....+ ...++.|+
T Consensus 227 La~~~~~--------~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~------~~~~k~~I~~~GaI~~LV 292 (458)
T 3nmz_A 227 LTFGDVA--------NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA------DVNSKKTLREVGSVKALM 292 (458)
T ss_dssp HHTTCHH--------HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC------CHHHHHHHHHTTHHHHHH
T ss_pred HhCCCcc--------cHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC------CHHHHHHHHHcCCHHHHH
Confidence 9854321 1122 24568999999987 9999999999999997531 01111111 25678888
Q ss_pred HhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHH--HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHH
Q 002877 511 RAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQII--AELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQV 588 (872)
Q Consensus 511 ~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 588 (872)
..+... .+..++..+..++..+..... +....+. ...+|.+...+... .+ ....+++..++.+|.+
T Consensus 293 ~lLl~s--~~~~v~~~A~~aL~nLs~~~~-~nk~~I~~~~Gal~~Lv~LL~~~--------~~-~~~~~v~~~A~~aL~n 360 (458)
T 3nmz_A 293 ECALEV--KKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAFLVGTLTYR--------SQ-TNTLAIIESGGGILRN 360 (458)
T ss_dssp HHHTTC--CSHHHHHHHHHHHHHHHHHCH-HHHHHHHHSTTHHHHHHHHTTCC--------CS-SSTTHHHHHHHHHHHH
T ss_pred HHHhcC--CCHHHHHHHHHHHHHHccCCH-HHHHHHHHhcCcHHHHHHHhcCC--------CC-cchHHHHHHHHHHHHH
Confidence 875422 235568889999999987443 2323333 35677777666421 11 0111466778888888
Q ss_pred HHHHcCCCccchhhchhhH-HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHh
Q 002877 589 IIQKFSSTDATKSFILQTA-DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQ 666 (872)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~ 666 (872)
+...+...+. ...... ...++.|+.++.+.+..+++.|..+++.++....+...... ...+|.|...+... +..
T Consensus 361 Ls~~~a~~~~---~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~ 436 (458)
T 3nmz_A 361 VSSLIATNED---HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKM 436 (458)
T ss_dssp HHHHHTTCHH---HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHH
T ss_pred HHhcccCCHH---HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHH
Confidence 8753211100 111111 14678899999988899999999999999753333322222 25789999988765 566
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 002877 667 VCAITVGVVGDVCRALDD 684 (872)
Q Consensus 667 v~~~a~~~l~~l~~~~~~ 684 (872)
++..|+++|..++...+.
T Consensus 437 v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 437 IAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHcCCHh
Confidence 999999999999875443
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.89 E-value=1.1e-07 Score=81.58 Aligned_cols=218 Identities=12% Similarity=0.174 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCC
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDK 685 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 685 (872)
|-..+++.++..+++.-|.|+..|+..+..+++..++...|.+..++-.+ +.++...........+|.++..-++
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~----~ksEaIpltqeIa~a~G~la~i~Pe- 103 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLL----KKSEAIPLTQEIAKAFGQMAKEKPE- 103 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH----HHCCSHHHHHHHHHHHHHHHHHCHH-
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH----hhcccCchHHHHHHHHhHHHHhCHH-
Confidence 44678889999999999999999999999999988887776655555444 4455555666777788888776543
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHH
Q 002877 686 VLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLR 765 (872)
Q Consensus 686 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 765 (872)
.+..++|.++..+.-. ++.+|.+...+++.|+.+.++.+. .+..-+..-+.+ + | ...|
T Consensus 104 ---~v~~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~~----~v~rdi~smlts---k---d-------~~Dk 161 (253)
T 2db0_A 104 ---LVKSMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLSS---K---N-------REDK 161 (253)
T ss_dssp ---HHHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTSC---S---S-------HHHH
T ss_pred ---HHHhhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhcC---C---C-------hHHH
Confidence 3567788888888777 788999999999999998876433 333333333221 1 1 1224
Q ss_pred HHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHH
Q 002877 766 SSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMS 845 (872)
Q Consensus 766 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~ 845 (872)
-+++ .++.++|++...-+.||++.++..+ .| .++-+|.++..+++.++..-+. .++.+...++
T Consensus 162 l~aL----nFi~alGen~~~yv~PfLprL~aLL----~D--~deiVRaSaVEtL~~lA~~npk-------lRkii~~kl~ 224 (253)
T 2db0_A 162 LTAL----NFIEAMGENSFKYVNPFLPRIINLL----HD--GDEIVRASAVEALVHLATLNDK-------LRKVVIKRLE 224 (253)
T ss_dssp HHHH----HHHHTCCTTTHHHHGGGHHHHHGGG----GC--SSHHHHHHHHHHHHHHHTSCHH-------HHHHHHHHHH
T ss_pred HHHH----HHHHHHhccCccccCcchHHHHHHH----cC--cchhhhHHHHHHHHHHHHcCHH-------HHHHHHHHHH
Confidence 3333 5677788876566778877765554 45 5799999999999999875443 2568889999
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHH
Q 002877 846 ECLRSDDEQLKETAGWTQGMINR 868 (872)
Q Consensus 846 ~~~~~~~~~~~~~a~~~~~~~~~ 868 (872)
+ ++|.+.-++....-|++.+.-
T Consensus 225 e-~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 225 E-LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp H-CCCSCHHHHHHHHHHHHHHHH
T ss_pred H-hcCcHHHHHHHHHHHHHHHHH
Confidence 8 999999999999999998753
No 75
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.87 E-value=8.2e-08 Score=91.17 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=135.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN 301 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 301 (872)
..+.+.+.+.++++.+|..++..+..+... ..++.++..+.++++.+|..|+..+..+...
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~--------- 75 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE--------- 75 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH---------
Confidence 566778888999999999999999876431 2334455566788999999998877655431
Q ss_pred CCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCC
Q 002877 302 PETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSD 381 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 381 (872)
..++.+...+.+ ++ +.+|..+..+|..+.. +..++.+...+.+++
T Consensus 76 -------------------~~~~~L~~~l~d-------~~--~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~ 120 (201)
T 3ltj_A 76 -------------------RAVEPLIKALKD-------ED--GWVRQSAAVALGQIGD-------ERAVEPLIKALKDED 120 (201)
T ss_dssp -------------------GGHHHHHHHTTC-------SS--HHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS
T ss_pred -------------------HHHHHHHHHHcC-------CC--HHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCC
Confidence 233444444432 11 6799998888876532 345666777788999
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILT 461 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 461 (872)
|.+|..++.+++.+.. +..++.+...+.|+++.||..++++|+++. . +..++
T Consensus 121 ~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~-------------~~~~~ 172 (201)
T 3ltj_A 121 WFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG----G-------------ERVRA 172 (201)
T ss_dssp HHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----S-------------HHHHH
T ss_pred HHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c-------------hhHHH
Confidence 9999999999999853 245678888999999999999999999884 1 34667
Q ss_pred HHHHHhhc-ChHHHHHHHHHHHHH
Q 002877 462 VLLESIKD-APNVAEKVCGAIYYL 484 (872)
Q Consensus 462 ~l~~~l~d-~~~v~~~a~~al~~l 484 (872)
.|...+.| ++.||..|..+|..+
T Consensus 173 ~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 173 AMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 77777787 999999999998765
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.87 E-value=7e-08 Score=92.46 Aligned_cols=185 Identities=19% Similarity=0.226 Sum_probs=135.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN 301 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 301 (872)
.++.+.+.+.++++.+|..++..|..+.. ...++.++..+.++++.+|..++..+..+...
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--------- 80 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE--------- 80 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH---------
Confidence 45666777888999999999999987643 12344455566788999999999877665431
Q ss_pred CCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCC
Q 002877 302 PETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSD 381 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 381 (872)
..++.+...+.+ ++ +.+|..+..+|..+.. +..++.+...+.+++
T Consensus 81 -------------------~~~~~L~~~l~~-------~~--~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~ 125 (211)
T 3ltm_A 81 -------------------RAVEPLIKALKD-------ED--GWVRQSAAVALGQIGD-------ERAVEPLIKALKDED 125 (211)
T ss_dssp -------------------GGHHHHHHHTTC-------SS--HHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS
T ss_pred -------------------HHHHHHHHHHcC-------CC--HHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCC
Confidence 123444444431 11 6799998888876632 345677777888999
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILT 461 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 461 (872)
|.+|..++.+++.+.. +..++.+.+.++|+++.||..++++|+++.. +..++
T Consensus 126 ~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------------~~~~~ 177 (211)
T 3ltm_A 126 WFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------------ERVRA 177 (211)
T ss_dssp HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------------HHHHH
T ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------------hhHHH
Confidence 9999999999999843 1356788888999999999999999998841 45677
Q ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 462 VLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 462 ~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
.|...+.| ++.||..|..+|..+....
T Consensus 178 ~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 178 AMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 77777888 9999999999998887654
No 77
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.86 E-value=1.4e-08 Score=97.37 Aligned_cols=159 Identities=11% Similarity=0.175 Sum_probs=110.9
Q ss_pred CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhc
Q 002877 363 DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELL 441 (872)
Q Consensus 363 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 441 (872)
....+...+.+...+.++++..|..|+.+|+.++.+.. +.....+. ..+|.+++.|.++++.+|..|+++|++++...
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 33445566778888889999999999999999996542 33333333 78999999999999999999999999998433
Q ss_pred cCCCCCccccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhh-HHHHHHHHHHhhccCCC
Q 002877 442 HCPATGFSVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPY-LTSIIAELLRAADRTDV 518 (872)
Q Consensus 442 ~~~~~~~~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~-~~~il~~l~~~l~~~~~ 518 (872)
.. ...... ...++.++..+.+ ++.++..|++++.+++... +...... -...++.++..+...
T Consensus 86 ~~-------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~~-- 150 (210)
T 4db6_A 86 NE-------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG------NEQIQAVIDAGALPALVQLLSSP-- 150 (210)
T ss_dssp HH-------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC------HHHHHHHHHTTHHHHHHHHTTCS--
T ss_pred cH-------HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC------HHHHHHHHHcCcHHHHHHHHcCC--
Confidence 21 000111 2367888888988 9999999999999998642 1111111 235677888887632
Q ss_pred cchhHHHHHHHHHHHHHhcC
Q 002877 519 GGSKLRSAAYETLNEVVRCS 538 (872)
Q Consensus 519 ~~~~vr~~a~~al~~l~~~~ 538 (872)
+..++..+..+|..++...
T Consensus 151 -~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 151 -NEQILQEALWALSNIASGG 169 (210)
T ss_dssp -CHHHHHHHHHHHHHHHTSC
T ss_pred -CHHHHHHHHHHHHHHHcCC
Confidence 3567888888888887643
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.82 E-value=2.6e-07 Score=92.06 Aligned_cols=178 Identities=18% Similarity=0.159 Sum_probs=120.3
Q ss_pred chHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH--HH
Q 002877 383 RCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLN-AMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL--QR 458 (872)
Q Consensus 383 ~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~ 458 (872)
..|..|+..|..+++.. +.-..+.. ..+|.++. .|.++++.||..|+|+|+.++...+. ....+ ..
T Consensus 55 e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~--------~~~~vv~~g 124 (296)
T 1xqr_A 55 QEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA--------IQEQVLGLG 124 (296)
T ss_dssp HHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH--------HHHHHHHCC
Confidence 45677778888887753 22222233 67899999 99999999999999999999864332 11111 24
Q ss_pred HHHHHHHHhh-c-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH-HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 002877 459 ILTVLLESIK-D-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL-TSIIAELLRAADRTDVGGSKLRSAAYETLNEVV 535 (872)
Q Consensus 459 ~l~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~ 535 (872)
.++.|+..+. + ++.++..|+++|++++.+. +.....+. ...++.|+..+.+. +..++..+.++|+.++
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~------~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQ------EAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLL 195 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC------HHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC------cHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHH
Confidence 7788888887 4 7889999999999999764 22122222 24666777777632 3556777777777666
Q ss_pred hcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhH-HHHHHHH
Q 002877 536 RCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTA-DQIMVLF 614 (872)
Q Consensus 536 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l 614 (872)
...+ + ...... ..+++.|
T Consensus 196 ~~~~-~------------------------------------------------------------~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 196 VGHP-E------------------------------------------------------------HKGTLCSMGMVQQL 214 (296)
T ss_dssp HHCG-G------------------------------------------------------------GHHHHHHTTHHHHH
T ss_pred hCCh-H------------------------------------------------------------HHHHHHHcCCHHHH
Confidence 5432 1 000011 1356777
Q ss_pred HHHHccCChhHHHHHHHHHHHHHHHh
Q 002877 615 LRVFACRSSTVHEEAMLAIGALAYAT 640 (872)
Q Consensus 615 ~~~l~~~~~~v~~~a~~~l~~l~~~~ 640 (872)
+.++.+.+..+++.++.+++.++...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 78888888999999999999998763
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.80 E-value=2.5e-06 Score=73.44 Aligned_cols=213 Identities=16% Similarity=0.223 Sum_probs=156.6
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcC
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFEN 301 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 301 (872)
+++.+...+.++-+.+++.++..+..++..+++...+.+..++-++- .++.-......-..++.++...+
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i~P------- 102 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKEKP------- 102 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHHCH-------
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHhCH-------
Confidence 77888888998999999999999999999999999998887776542 22322232333334455555422
Q ss_pred CCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCC
Q 002877 302 PETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSD 381 (872)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 381 (872)
+.+..++|+++....-. | ...|.....+|+.++...| ...+.+..-+...+.|++
T Consensus 103 ---------------e~v~~vVp~lfanyrig--d-------~kikIn~~yaLeeIaranP-~l~~~v~rdi~smltskd 157 (253)
T 2db0_A 103 ---------------ELVKSMIPVLFANYRIG--D-------EKTKINVSYALEEIAKANP-MLMASIVRDFMSMLSSKN 157 (253)
T ss_dssp ---------------HHHHHHHHHHHHHSCCC--S-------HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHTSCSS
T ss_pred ---------------HHHHhhHHHHHHHHhcC--C-------ccceecHHHHHHHHHHhCh-HHHHHHHHHHHHHhcCCC
Confidence 23456788888665432 1 3567777788999988775 344555666667777888
Q ss_pred cchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHH
Q 002877 382 WRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILT 461 (872)
Q Consensus 382 ~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 461 (872)
-..|-+++..++.+.++. +. |+...+|.+...|.|.+..||..|..+|+.++..- +-+.+++.
T Consensus 158 ~~Dkl~aLnFi~alGen~-~~----yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n------------pklRkii~ 220 (253)
T 2db0_A 158 REDKLTALNFIEAMGENS-FK----YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN------------DKLRKVVI 220 (253)
T ss_dssp HHHHHHHHHHHHTCCTTT-HH----HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccC-cc----ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC------------HHHHHHHH
Confidence 888899999998887755 23 55566788899999999999999999999998533 34778888
Q ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHH
Q 002877 462 VLLESIKD-APNVAEKVCGAIYYLAQ 486 (872)
Q Consensus 462 ~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (872)
..++-+.| +.-|+.....+++.+.-
T Consensus 221 ~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 221 KRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88888888 77777777777777653
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.79 E-value=0.00062 Score=77.06 Aligned_cols=336 Identities=12% Similarity=0.069 Sum_probs=183.8
Q ss_pred cHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhh---c-ChHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 002877 423 NNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIK---D-APNVAEKVCGAIYYLAQGYEDAGPSSSLL 498 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~---d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (872)
....+..|...+|-+..|..+ ..+..|-+.+. . ++.++..|+.+++-+..+. .+
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~~--------------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~------~~-- 428 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNLL--------------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF------GR-- 428 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCTT--------------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT------TH--
T ss_pred chHHHHHHHHHhhhhccCchH--------------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC------cH--
Confidence 455677888888888765543 12333333443 3 7889999999998876543 21
Q ss_pred hhhHHHHHHHHHHhhccCC---C--cchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhh
Q 002877 499 SPYLTSIIAELLRAADRTD---V--GGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDRE 573 (872)
Q Consensus 499 ~~~~~~il~~l~~~l~~~~---~--~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 573 (872)
.++..|...+...+ . ....+|..+.-+|+.+.-..+ -.+.++.+.+.+ .. ++
T Consensus 429 -----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~---~eev~e~L~~~L----~d---------d~-- 485 (963)
T 4ady_A 429 -----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA---NIEVYEALKEVL----YN---------DS-- 485 (963)
T ss_dssp -----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC---CHHHHHHHHHHH----HT---------CC--
T ss_pred -----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHH----hc---------CC--
Confidence 24444555554222 0 024568888777777543222 123333333333 21 00
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHH-ccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHH
Q 002877 574 KQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF-ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFY 652 (872)
Q Consensus 574 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~ 652 (872)
...+..+..+++-+.-+-+. ..+++.++..+ ++.+..++..+..+|+-+...-.+ ..+.++
T Consensus 486 --~~~~~~AalALGli~vGTgn------------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e----~~~~li 547 (963)
T 4ady_A 486 --ATSGEAAALGMGLCMLGTGK------------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE----LADDLI 547 (963)
T ss_dssp --HHHHHHHHHHHHHHHTTCCC------------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG----GGHHHH
T ss_pred --HHHHHHHHHHHhhhhcccCC------------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH----HHHHHH
Confidence 12233444555544333333 23344444433 344667888887777776332222 233444
Q ss_pred HHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccchhhh
Q 002877 653 QYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFCDGIMSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVHFEKY 732 (872)
Q Consensus 653 ~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 732 (872)
..+ ...+++.+|..++.++|.-....|+ ...+..|+..+.+.. +..+|..|..++|-|+..-++ .
T Consensus 548 ~~L----~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e----~ 612 (963)
T 4ady_A 548 TKM----LASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT----T 612 (963)
T ss_dssp HHH----HHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS----S
T ss_pred HHH----HhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH----H
Confidence 443 3445677999888888765444443 244555555444332 567899999999987643322 2
Q ss_pred HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccchhhhhhhhhhHHHHHHHHHHHhcCCCCCHhHH
Q 002877 733 VPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKSARAEVMMPYAQHLLQFIELIFKDNHRDENVT 812 (872)
Q Consensus 733 l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 812 (872)
.+.++..+... ++..+|..+..++.-+..+- | ...+++.|.+...| .++.||
T Consensus 613 v~rlv~~L~~~----------------~d~~VR~gAalALGli~aGn---------~-~~~aid~L~~L~~D--~d~~Vr 664 (963)
T 4ady_A 613 VPRIVQLLSKS----------------HNAHVRCGTAFALGIACAGK---------G-LQSAIDVLDPLTKD--PVDFVR 664 (963)
T ss_dssp HHHHTTTGGGC----------------SCHHHHHHHHHHHHHHTSSS---------C-CHHHHHHHHHHHTC--SSHHHH
T ss_pred HHHHHHHHHhc----------------CCHHHHHHHHHHHHHhccCC---------C-cHHHHHHHHHHccC--CCHHHH
Confidence 33333322221 12467776665553332221 1 24455666666666 679999
Q ss_pred HHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHh-cCCcHHHHHHHHHHHHHH
Q 002877 813 KAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECL-RSDDEQLKETAGWTQGMI 866 (872)
Q Consensus 813 ~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~-~~~~~~~~~~a~~~~~~~ 866 (872)
+.|+..+|-+......... +-...+...+.+... ++.++..+=.|.-|+|.+
T Consensus 665 q~Ai~ALG~Ig~gtnna~~--~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 665 QAAMIALSMILIQQTEKLN--PQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHHHHSTTCCTTTC--TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccccc--hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 9999999987654333210 111234444444322 246788899999999876
No 81
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.69 E-value=4.7e-07 Score=86.65 Aligned_cols=190 Identities=15% Similarity=0.154 Sum_probs=139.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH-HHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhc
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ-TLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFE 300 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 300 (872)
..+.+..++++++++++..++.++..+....+........ ..++.++..+.+.+++++..|+..+..++.....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----- 87 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----- 87 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-----
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH-----
Confidence 4556777888899999999999999998654443333333 4677888888889999999999999998753221
Q ss_pred CCCCCCCCCCchHHHHHhH-HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCc---c-hhchHHHHHh
Q 002877 301 NPETGDSDSPNYHFIEKAR-SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDE---V-VPLVMPFVEA 375 (872)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~ 375 (872)
.....+ ...+|.++..+...+ ..++..|..+|..++...++. + -...++.+..
T Consensus 88 -------------~~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 145 (210)
T 4db6_A 88 -------------QIQAVIDAGALPALVQLLSSPN---------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145 (210)
T ss_dssp -------------HHHHHHHTTCHHHHHHHTTCSC---------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -------------HHHHHHHCCCHHHHHHHHcCCc---------HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH
Confidence 111111 246777777775321 578899999999988643221 1 2345777888
Q ss_pred hccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 002877 376 NIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFE 439 (872)
Q Consensus 376 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 439 (872)
.+.+++...|+.++.+++.++.... +....... ..++.+.+.+.++++.+|..|+++|++++.
T Consensus 146 ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 146 LLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8888899999999999999997642 32222233 788999999999999999999999999864
No 82
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.69 E-value=1.5e-06 Score=83.17 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=141.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhc
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLA 84 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~ 84 (872)
+..++..+.++|+.+|..|-..|.++.. ++.+..|...+.+ .++.+|..|...|.+.-.
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~---------------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---------------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC----------------
Confidence 5677788889999999999999998766 5777888888875 479999999999876431
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhcc
Q 002877 85 IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEI 164 (872)
Q Consensus 85 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 164 (872)
+ .....|++.|.++++.+|..++.+++.+. .++.++.|.+.+.++ ++.+|..++..|+.+...
T Consensus 80 --~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~- 142 (211)
T 3ltm_A 80 --E----RAVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDE- 142 (211)
T ss_dssp --G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCG-
T ss_pred --H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCH-
Confidence 1 12346677889999999999999998873 235678888889888 899999999999887431
Q ss_pred CccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 002877 165 SHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFEC 244 (872)
Q Consensus 165 ~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 244 (872)
..++.+...+.+ +++.||..++.+|+.+- . +..++.+...++++++.+|..+.+.
T Consensus 143 -----------~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~--------~----~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 143 -----------RAVEPLIKALKD--EDGWVRQSAADALGEIG--------G----ERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp -----------GGHHHHHHHTTC--SSHHHHHHHHHHHHHHC--------S----HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--------c----hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 134556667777 68899999999999751 1 1255667777778899999999999
Q ss_pred HHHHHHhh
Q 002877 245 LVSIASTY 252 (872)
Q Consensus 245 l~~l~~~~ 252 (872)
|..+....
T Consensus 198 L~~~~~~~ 205 (211)
T 3ltm_A 198 LETHKSFN 205 (211)
T ss_dssp HHC-----
T ss_pred HHhcCCCC
Confidence 98876544
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.68 E-value=2.9e-07 Score=94.47 Aligned_cols=267 Identities=9% Similarity=0.064 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHhhcCCCccchhHhH-H-hHHHHHHHhcC-----------CCcHHHHHHHHHHHHHHHhhccCCCCCccc
Q 002877 384 CREAATYAFGSVLEGPTIDKLAPLV-H-AGFDFLLNAMR-----------DENNHVKDTTAWTLSRIFELLHCPATGFSV 450 (872)
Q Consensus 384 ~r~aal~~l~~i~~~~~~~~~~~~l-~-~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
....|+.+|+.++.. ...+..+ . ..++.++..|. ..++.++..|+|+|..++..-..
T Consensus 48 ~~~~A~~aL~nls~d---~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~------- 117 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD---EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA------- 117 (354)
T ss_dssp THHHHHHHHHHHHTS---HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH-------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH-------
Confidence 344677778887754 1222222 2 56666666663 13578999999999999843321
Q ss_pred cCccc---HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH--HHHHHHHHHhhccCCCcchhHH
Q 002877 451 ISPEN---LQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL--TSIIAELLRAADRTDVGGSKLR 524 (872)
Q Consensus 451 ~~~~~---~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr 524 (872)
.... ....++.|+..|.+ ++.++..|+++|.+++... .+.....+ ...+|.|+..+.+. .+..++
T Consensus 118 -~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~------~~~~k~~i~~~G~Ip~Lv~lL~~~--~~~~~~ 188 (354)
T 3nmw_A 118 -NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA------DVNSKKTLREVGSVKALMECALEV--KKESTL 188 (354)
T ss_dssp -HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC------CHHHHHHHHHTTHHHHHHHHHHHC--CCHHHH
T ss_pred -HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccC------CHHHHHHHHHCCCHHHHHHHHhcC--CCHHHH
Confidence 1122 24568999999987 9999999999999998531 11111111 24677888865422 234568
Q ss_pred HHHHHHHHHHHhcCCCcccHHHH--HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhh
Q 002877 525 SAAYETLNEVVRCSNITETSQII--AELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSF 602 (872)
Q Consensus 525 ~~a~~al~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 602 (872)
..+..++..+..... +....+. ...+|.+...+... .+ ....+++..++.+|.++...+...+ .
T Consensus 189 ~~A~~aL~nLs~~~~-~nk~~i~~~~Gai~~Lv~lL~~~--------~~-~~~~~v~~~A~~aL~nLs~~~a~~~----~ 254 (354)
T 3nmw_A 189 KSVLSALWNLSAHCT-ENKADICAVDGALAFLVGTLTYR--------SQ-TNTLAIIESGGGILRNVSSLIATNE----D 254 (354)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHSTTHHHHHHHHTTCC--------CS-SSCCHHHHHHHHHHHHHHHHHTTCH----H
T ss_pred HHHHHHHHHHHccCh-hhhHHHHHhcCcHHHHHHHhccC--------CC-cccHHHHHHHHHHHHHHHhhccCCH----H
Confidence 889999999987443 3333333 35677777766421 11 0011356778888888875321110 1
Q ss_pred chhh-H-HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHHH
Q 002877 603 ILQT-A-DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDVC 679 (872)
Q Consensus 603 ~~~~-~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 679 (872)
.... . ...++.|+.++.+.+..+++.|..++..++....+...... ...+|.|...+.+. +..++..|+++|..++
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 1111 1 14678889999988899999999999999743333222222 25789999988765 4569999999999998
Q ss_pred HHhcC
Q 002877 680 RALDD 684 (872)
Q Consensus 680 ~~~~~ 684 (872)
...+.
T Consensus 334 ~~~~~ 338 (354)
T 3nmw_A 334 ANRPA 338 (354)
T ss_dssp TTCCG
T ss_pred cCCHH
Confidence 76553
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.65 E-value=2.6e-06 Score=80.61 Aligned_cols=181 Identities=17% Similarity=0.163 Sum_probs=140.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhc
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLA 84 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~ 84 (872)
...+++.+.++|+.+|..|-..|..+.. +..+..|...|.+ .++.+|..|+..|.+.-.
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~---------------- 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---------------- 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC----------------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC----------------
Confidence 4577888999999999999999998776 4667888888864 478999999998876421
Q ss_pred CChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhcc
Q 002877 85 IDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEI 164 (872)
Q Consensus 85 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 164 (872)
++ ....|.+.|.++++.+|..++.+++.+.. ++.++.+...+.++ ++.+|..++..|+.+...
T Consensus 75 --~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~- 137 (201)
T 3ltj_A 75 --ER----AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDE--DWFVRIAAAFALGEIGDE- 137 (201)
T ss_dssp --GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTCG-
T ss_pred --HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCH-
Confidence 11 23466778899999999999999988632 34677888888888 899999999999877431
Q ss_pred CccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 002877 165 SHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFEC 244 (872)
Q Consensus 165 ~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 244 (872)
..++.+...+.+ ++..||..++.+|+.+- . +..++.+...++++++.+|..+.+.
T Consensus 138 -----------~~~~~L~~~l~d--~~~~vr~~A~~aL~~~~--------~----~~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 138 -----------RAVEPLIKALKD--EDGWVRQSAADALGEIG--------G----ERVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp -----------GGHHHHHHHTTC--SSHHHHHHHHHHHHHHC--------S----HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--------c----hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 234556677777 68899999999999751 1 1255666677778899999999998
Q ss_pred HHHH
Q 002877 245 LVSI 248 (872)
Q Consensus 245 l~~l 248 (872)
+..+
T Consensus 193 L~~l 196 (201)
T 3ltj_A 193 LETH 196 (201)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.53 E-value=3.3e-06 Score=80.93 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=136.4
Q ss_pred hcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCC
Q 002877 230 AKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDS 309 (872)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 309 (872)
+.+.+...+..+++.+...++..++.+...++-++.-+.-.+-+.+..+...+++++..+.+.-....
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~------------ 122 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE------------ 122 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc------------
Confidence 34568888899999999988877776666677677755545557788899999999988876422100
Q ss_pred CchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHH
Q 002877 310 PNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAAT 389 (872)
Q Consensus 310 ~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal 389 (872)
..+...-...++|.++..+.+.. ..+|..+..++..+...++ ...+++.+.+.+.+.+|+.|+.++
T Consensus 123 --y~~~~~ea~~~lP~LveKlGd~k---------~~vR~~~r~il~~l~~v~~---~~~v~~~l~~g~ksKN~R~R~e~l 188 (266)
T 2of3_A 123 --TPMSQEEVSAFVPYLLLKTGEAK---------DNMRTSVRDIVNVLSDVVG---PLKMTPMLLDALKSKNARQRSECL 188 (266)
T ss_dssp --CCCCHHHHHHHHHHHHHGGGCSS---------HHHHHHHHHHHHHHHHHHC---HHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHccCCHHHHHHHH
Confidence 11222223568898888775422 4689999999998887765 233667777788899999999999
Q ss_pred HHHHHhhcCCCccchhHhHHhHH---HHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 390 YAFGSVLEGPTIDKLAPLVHAGF---DFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 390 ~~l~~i~~~~~~~~~~~~l~~l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
..++.+.+..+.. + ...+ |.+.+.+.|++..||.+|..++..+..+.++
T Consensus 189 ~~l~~li~~~G~~---~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 189 LVIEYYITNAGIS---P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHHHHHHCSG---G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCC---c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 9999998755422 1 2456 9999999999999999999999988877765
No 86
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.50 E-value=1.5e-06 Score=86.61 Aligned_cols=177 Identities=11% Similarity=0.067 Sum_probs=123.3
Q ss_pred hhhhHHHHHHHHHhhcC--Ccch-hchHHHHHh-hccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcC
Q 002877 346 ISMAGGTCLGLVARTVG--DEVV-PLVMPFVEA-NIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMR 420 (872)
Q Consensus 346 ~r~~a~~~l~~l~~~~~--~~~~-~~l~~~l~~-~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~ 420 (872)
-|..|...|..++.... ..+. --.++.+.. .+.+++..+|..|+++++.++.+. +..-...+. ..+|.|++.|+
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHc
Confidence 34555555655554322 1111 123455666 888999999999999999999764 222222333 78899999997
Q ss_pred -CCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH-HHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCC
Q 002877 421 -DENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL-QRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSL 497 (872)
Q Consensus 421 -d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~ 497 (872)
++++.+|..|+|+|+.++...+. ....+. ...++.|...+.+ ++.++..|++++.+++... ++.
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~-------~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~------~~~ 201 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEA-------GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH------PEH 201 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHH-------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC------GGG
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcH-------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC------hHH
Confidence 56899999999999999865432 111122 2478888888888 9999999999999999763 222
Q ss_pred chhhH-HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 498 LSPYL-TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 498 l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
..... ..+++.|+..+... +..++..++.+|+.+++..+
T Consensus 202 ~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 202 KGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHhCCh
Confidence 22222 36888888888754 35679999999999998743
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.46 E-value=1.5e-06 Score=89.17 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=147.7
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhH---HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccH-H
Q 002877 470 APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL---TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETS-Q 545 (872)
Q Consensus 470 ~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~---~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~-~ 545 (872)
++.++..|+++|.+++..- +.....+ ...+|.|+..+.+. +..++..+..+|..+..... .... .
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~-------~~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~-~~~k~~ 165 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGD-------VANKATLCSMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRAD-VNSKKT 165 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSC-------HHHHHHHHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHTTCC-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC-------HHHHHHHHHcCCcHHHHHHHHCCC---CHHHHHHHHHHHHHHhccCC-HHHHHH
Confidence 4779999999999998542 1122222 46799999999743 35679999999999986422 2222 2
Q ss_pred HHH-HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhh--HHHHHHHHHHHHccCC
Q 002877 546 IIA-ELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQT--ADQIMVLFLRVFACRS 622 (872)
Q Consensus 546 ~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~ 622 (872)
+.+ ..+|.+++.+.+. ....++..++.++.++...... .-... ....++.|+.++.+.+
T Consensus 166 i~~~G~Ip~Lv~lL~~~------------~~~~~~~~A~~aL~nLs~~~~~------nk~~i~~~~Gai~~Lv~lL~~~~ 227 (354)
T 3nmw_A 166 LREVGSVKALMECALEV------------KKESTLKSVLSALWNLSAHCTE------NKADICAVDGALAFLVGTLTYRS 227 (354)
T ss_dssp HHHTTHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHTTCHH------HHHHHHHSTTHHHHHHHHTTCCC
T ss_pred HHHCCCHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHccChh------hhHHHHHhcCcHHHHHHHhccCC
Confidence 222 4678888875431 1124556677777777542111 10111 1356788888887664
Q ss_pred h----hHHHHHHHHHHHHHHH---hhhHHHhhh-HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccH-HHH
Q 002877 623 S----TVHEEAMLAIGALAYA---TGPEFAKYM-PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFC-DGI 693 (872)
Q Consensus 623 ~----~v~~~a~~~l~~l~~~---~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i 693 (872)
. .+++.+..++..++.. ..+...... ...+|.|...+.+. +..++..|+++|+.++....+...... ...
T Consensus 228 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 228 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 3 4889999999998762 222222111 24688888888765 456999999999999742221111111 256
Q ss_pred HHHHHHHhcCCCCCCCCchhHHHHHHHHHHhhccc
Q 002877 694 MSLLLNALSNSQLNRSVKPPILSCFGDIALAIGVH 728 (872)
Q Consensus 694 ~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~ 728 (872)
++.|..+|.++ +..+++.+..++.+|+...+..
T Consensus 307 i~~Lv~LL~s~--~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 307 VSMLKNLIHSK--HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHTTTTCS--SHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHHHcCCHHH
Confidence 88999999877 7889999999999999875543
No 88
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.37 E-value=0.0002 Score=83.29 Aligned_cols=743 Identities=9% Similarity=0.079 Sum_probs=337.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChHH----HHHHHHHHHhc---CCCChhHHHHHHHHHhhcccCCcccchHH
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNLPG----FLLSLSVELVN---NEKPTESRRLAGIMLKNSLDAKDATTKED 77 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~----~~~~l~~il~~---~~~~~~vr~~a~~~l~~~i~~~~~~~~~~ 77 (872)
+..+++-..|.=+++|+.|...|....+. +++ +++.+++.|.. ....+.++-.--+++.+.+.+ .
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~-~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~-------~ 206 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQ-LVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHR-------K 206 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTT-BTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHH-------H
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhh-------H
Confidence 45666777888899999999999997764 333 45556666654 333445444333332221111 0
Q ss_pred HHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHH
Q 002877 78 LAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETL 157 (872)
Q Consensus 78 ~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l 157 (872)
....|. ....+-..|+++...+.+.|++.+..+...+.....+...+..+-..+...+..+ +.. ...+....
T Consensus 207 ~~~d~~-----~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~--d~~-i~~~~~~~ 278 (997)
T 1vsy_5 207 LMTDYK-----DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPP--DGT-INLQVEAV 278 (997)
T ss_dssp GGGCHH-----HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCS--CSS-TTSHHHHH
T ss_pred HhcChH-----HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCC--cHH-HHHHHHHH
Confidence 112332 3334555677776667788888877777766643221112210001111222211 100 01111111
Q ss_pred HHhhhccCccccchhhHHHHHHHHHhcccCCCCC--HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcH
Q 002877 158 GYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHS--AEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEV 235 (872)
Q Consensus 158 ~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 235 (872)
....+.- .+.. ......+...++...++. .+ +.....++..+.++.......++ +.++..+.+.+.++.+
T Consensus 279 ~~~~~~~-r~~~-~~~~~~L~~~l~~~~~~~-~h~~Wk~~~~~~~~l~~l~~r~d~~~~-----~~~v~~~~~~l~~dhp 350 (997)
T 1vsy_5 279 KLAKKKK-REYY-LSLLVDLQDKLLDKLDNE-KDMGWKIRMFILRFVTQIQSNLESKPD-----KRAVFSIISQISTKHP 350 (997)
T ss_dssp HHHTTHH-HHHH-HHHHHHHHHHHHHHHHSS-TTCCSCHHHHHHHHHHHHTCCSSCCCC-----HHHHHHHHGGGGGCCH
T ss_pred HHHHHHH-HHHH-HHHHHHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHhhcCCCH
Confidence 1111110 0111 222344554445555332 45 77777777776654322222122 2367788888888999
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hHHh-HHHHHHH-HH-HHh---cCCChHHHHHHHHhHhH-HhHhhh-h-hhhhcCCCCC
Q 002877 236 EIRQAAFECLVSIASTYYEV-LEPY-MQTLFEL-TS-NAV---KGDEEAVALQAVEFWSS-ICDEEI-E-LQEFENPETG 305 (872)
Q Consensus 236 ~~~~~~~~~l~~l~~~~~~~-~~~~-l~~l~~~-~~-~~~---~~~~~~~~~~al~~l~~-l~~~~~-~-~~~~~~~~~~ 305 (872)
.+|..++.++..++...... ..++ ...+... .. ... .+.+++. .+.|.. ..+.+. . ..+. -+..|
T Consensus 351 ~~R~~a~~~l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~----~~~~~~~~~~~~~~~yfid~-~~~~G 425 (997)
T 1vsy_5 351 EIIHLVVKSLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSF----PKTFTEEMNNFDNPKYFIDL-RAYVG 425 (997)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTT----HHHHHHHHSCCSSCCCBCCS-CCCSB
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccH----HHHHHHHHhcccCCccceeC-CCCCe
Confidence 99999999998877652111 0000 0000000 00 000 0001111 111111 000000 0 0000 00001
Q ss_pred -----------CC------CCCchHHHHHhH-----HhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHH----h
Q 002877 306 -----------DS------DSPNYHFIEKAR-----SSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVA----R 359 (872)
Q Consensus 306 -----------~~------~~~~~~~~~~~l-----~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~----~ 359 (872)
.+ .......+-..+ +.-+..++..+.. |++.. +.++ ..-..++..+. .
T Consensus 426 wl~Wp~~~~vy~p~~~~l~~~~~e~~i~~~f~~~~~~~~~~~l~~~l~q--e~~~~--~~F~--~~~v~l~k~lf~l~~r 499 (997)
T 1vsy_5 426 WLCWGRLMYVMSPKALKLNLRENELEVLKTAGHLLTREFLRDVTMNLVQ--DNETR--GVFS--SGNVSFFSLVILLISS 499 (997)
T ss_dssp TTBCCSEEEEECTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTTTT--CCCC--HHHHHHHHHHHHHHTT
T ss_pred EeeeCCceeEeCCCCCCCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHh--hcccc--Cccc--cchHHHHHHHHHHHhc
Confidence 00 000011111111 2333344444432 12111 1233 33344555555 4
Q ss_pred hcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCC---ccchhHhHHhHHHHHHHhcC-CCcHHHHHHHHHHHH
Q 002877 360 TVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPT---IDKLAPLVHAGFDFLLNAMR-DENNHVKDTTAWTLS 435 (872)
Q Consensus 360 ~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~---~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 435 (872)
.+|+..++.+.+.+.....+.+-....++.-.++.+..+.. .+.....-.-+.|.+...+. +-.+.....-..++.
T Consensus 500 n~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~ 579 (997)
T 1vsy_5 500 GFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAW 579 (997)
T ss_dssp TTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 56889999999999998888776666677777777766643 12333333355566666665 344433332222221
Q ss_pred HHHhhccCCCCCccccCcccHHHHHHHHH--HH---hhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHH
Q 002877 436 RIFELLHCPATGFSVISPENLQRILTVLL--ES---IKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAEL 509 (872)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~---l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l 509 (872)
-+... ..+..++.+++.|+ .. ... ..-........+..+....+ -.... ...++..+
T Consensus 580 ~~~~~----------~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~------wr~~~-~~~~l~~~ 642 (997)
T 1vsy_5 580 WLPAV----------VDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSME------FRAPD-VGKLFDEL 642 (997)
T ss_dssp HHHHH----------SCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHT------TSSCC-CHHHHHHC
T ss_pred HHhcC----------CChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhc------ccccc-HHHHHHHH
Confidence 11111 12345566777662 21 111 11111122333443433331 11111 23334433
Q ss_pred HHhhccCCCcchhHHHHHHHHHHHHHhcCC---Cccc---------------------HHHHHHHHHHHHHHHHHHHhhh
Q 002877 510 LRAADRTDVGGSKLRSAAYETLNEVVRCSN---ITET---------------------SQIIAELLPAIMGRLGQTLELQ 565 (872)
Q Consensus 510 ~~~l~~~~~~~~~vr~~a~~al~~l~~~~~---~~~~---------------------~~~~~~l~~~l~~~l~~~~~~~ 565 (872)
+ + +.....||......+..+....- .... .+.+...++.+++.+.+.....
T Consensus 643 ~--l---~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~ 717 (997)
T 1vsy_5 643 V--F---DHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSV 717 (997)
T ss_dssp C--S---CCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTT
T ss_pred H--h---CCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcc
Confidence 3 3 23345678888877777765541 0011 1222222223333333221110
Q ss_pred -hcCcc--hhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHH-HHHHHHHHHccCCh-hHHHH-HHHHHHHHHHH
Q 002877 566 -IVSSD--DREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQ-IMVLFLRVFACRSS-TVHEE-AMLAIGALAYA 639 (872)
Q Consensus 566 -~~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-l~~~l~~~l~~~~~-~v~~~-a~~~l~~l~~~ 639 (872)
..+.. .+..+. ...-.++.-+...++.. ....+.|+++. +++.++.+.+..+. ++... +..++..++..
T Consensus 718 ~~~~~~~~~~s~y~---~~~kTvl~wl~~~l~~~--~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~ 792 (997)
T 1vsy_5 718 VGLNPQQFIKTDYF---YRTSTIFYWIKEMARGP--NKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYM 792 (997)
T ss_dssp SSCCSTTTTTSHHH---HHHHHHHHHHHHHSSGG--GHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSS
T ss_pred cccCccccchHHHH---HHHHHHHHHHHHHhcCC--CccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcC
Confidence 00000 011111 11122333344444441 11135566665 66766666555432 34333 33444444321
Q ss_pred hhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCcc-ccHHHHHHHHHHHhcCCCCC-CCCchhHHHH
Q 002877 640 TGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVL-PFCDGIMSLLLNALSNSQLN-RSVKPPILSC 717 (872)
Q Consensus 640 ~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~-~~~~~~~~~~ 717 (872)
. .-.++++.++..+.+....+.+. .|..++..+..+.-.---.+. .....+...++.+|.++ . .+||+.|..+
T Consensus 793 ~--~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~--q~~EVRe~Aa~t 867 (997)
T 1vsy_5 793 P--IRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNE--QFVEVRVRAASI 867 (997)
T ss_dssp C--CCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCS--SCHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHH
Confidence 1 11335566666766655544567 888888888766543211111 22357788888888887 7 8899999999
Q ss_pred HHHHHHhh-c-cchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHH--HHHHHHHHHHHhHhhccchhhhhhh--hhhH
Q 002877 718 FGDIALAI-G-VHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGN--QLRSSIFEAYSGILQGFKSARAEVM--MPYA 791 (872)
Q Consensus 718 l~~l~~~~-~-~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ 791 (872)
++-+.... . .... .++..+.+.+...... ......+.. ..|..++-.+.+++.+. +=.+ .+++
T Consensus 868 Lsgll~c~~~~~~~~----~li~~f~~~~~~~~~~---~~~~~~~~~~~~~rH~aVLgL~AlV~a~----Py~vP~P~w~ 936 (997)
T 1vsy_5 868 LSDIVHNWKEEQPLL----SLIERFAKGLDVNKYT---SKERQKLSKTDIKIHGNVLGLGAIISAF----PYVFPLPPWI 936 (997)
T ss_dssp HHHHHHSCCSHHHHH----HHHHHHTTSSTTTSSC---HHHHHHHHHHCHHHHHHHHHHHHHHTTC----SCCSSCCTHH
T ss_pred HHHHHHcCCchhhHH----HHHHHHHHHHhhcccc---cccccccchHHHHHHHHHHHHHHHHhhC----CCCCCCCccc
Confidence 99987654 2 1111 1222121111000000 000000101 12333333344444432 2223 5788
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCc
Q 002877 792 QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGP 828 (872)
Q Consensus 792 ~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 828 (872)
+.++..|.....+ ...+++++=.+++++-++-.+
T Consensus 937 P~~l~~La~~~~~---~~~i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 937 PKNLSNLSSWART---SGMTGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp HHHHHHHHTTSSS---CSSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHhCC---CCchHHHHHHHHHHHHhccch
Confidence 9999888776554 344888999999997665554
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.3e-05 Score=79.96 Aligned_cols=180 Identities=12% Similarity=0.213 Sum_probs=133.6
Q ss_pred CCcchhhhHHHHHHHHHhhcCCc-----c---hhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCcc-----chhHhH
Q 002877 342 SIWNISMAGGTCLGLVARTVGDE-----V---VPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTID-----KLAPLV 408 (872)
Q Consensus 342 ~~~~~r~~a~~~l~~l~~~~~~~-----~---~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~-----~~~~~l 408 (872)
..|..|..|.+.+..+....+.. . +..+.+.+...+.|.+..+...++.++..++...+.. ....+.
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~ 100 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLI 100 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH
Confidence 34999999988888777654321 1 2334677888888999999999999999998765422 233456
Q ss_pred HhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHH
Q 002877 409 HAGFDFLLNA-MRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQ 486 (872)
Q Consensus 409 ~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~ 486 (872)
..++|.++.- +.|..+.+|..+..++..+++... ....+++.+...+.. +|+++..++..+..++.
T Consensus 101 ~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~------------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 101 STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT------------SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS------------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 6788888865 899999999999999888775443 234567778888888 99999999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 487 GYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 487 ~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
.++ ...-...+.++.+++.+..++.. .+..||..|.+++..+.+..|
T Consensus 169 ~fg---~~~~~~k~~l~~i~~~l~k~l~d---~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 169 AFG---LTNVNVQTFLPELLKHVPQLAGH---GDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHT---TTTCCHHHHHHHHGGGHHHHHTC---SSHHHHHHHHHHHHHHHTC--
T ss_pred HhC---CCcCCchhHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhC
Confidence 873 11112345677888888888873 457889999999999999888
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.33 E-value=5.3e-06 Score=82.90 Aligned_cols=198 Identities=12% Similarity=0.117 Sum_probs=127.9
Q ss_pred HHhhccCCCcchHHHHHHHHHHhhcCCCccc----hhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCc
Q 002877 373 VEANIVKSDWRCREAATYAFGSVLEGPTIDK----LAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGF 448 (872)
Q Consensus 373 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~----~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 448 (872)
+.+.+.|.+|+.|..|+..+..+........ ....+..+.+.+...+.|.|..|...++.++..++........ .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~-~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSL-K 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---C-C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhc-c
Confidence 4577889999999999998887765432111 1112334566777888999999999999999999876654100 0
Q ss_pred cccCcccHHHHHHHHHHH-hhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHH
Q 002877 449 SVISPENLQRILTVLLES-IKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSA 526 (872)
Q Consensus 449 ~~~~~~~~~~~l~~l~~~-l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~ 526 (872)
......+...+++.|+.. +.+ .+.++..+..++..+++... . ...+++.+...+. ..+..++..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-------~----~~~~~e~l~~~l~---~Knpkv~~~ 158 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-------S----ITQSVELVIPFFE---KKLPKLIAA 158 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-------S----SHHHHHHHGGGGG---CSCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-------c----HHHHHHHHHHHHh---ccCHHHHHH
Confidence 001123456677877754 777 88899999998888876541 1 1233444555554 244666666
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhh
Q 002877 527 AYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQT 606 (872)
Q Consensus 527 a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 606 (872)
++.+|..++...| .... ...+.
T Consensus 159 ~l~~l~~~l~~fg-------------------------------------------------------~~~~---~~k~~ 180 (278)
T 4ffb_C 159 AANCVYELMAAFG-------------------------------------------------------LTNV---NVQTF 180 (278)
T ss_dssp HHHHHHHHHHHHT-------------------------------------------------------TTTC---CHHHH
T ss_pred HHHHHHHHHHHhC-------------------------------------------------------CCcC---CchhH
Confidence 6666665555443 2100 12345
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhH
Q 002877 607 ADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPE 643 (872)
Q Consensus 607 ~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~ 643 (872)
++.+++.+..++.+.+..||..|..+++.+-...|+.
T Consensus 181 l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 181 LPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 5677788888999999999999999999987777754
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.29 E-value=1.6e-05 Score=76.18 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=137.3
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccc
Q 002877 371 PFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSV 450 (872)
Q Consensus 371 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 450 (872)
+-+...+.+.+|+.|.+|+-.|....+.. ++.+...++-+++-+.-.+.|.|+.|-..++..+..+...+.... .
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~-~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~----y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS-PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE----T 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC-HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----C
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc----c
Confidence 44556666789999999988887766543 244444455556655556679999999999999988876665411 1
Q ss_pred cCccc-HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHH
Q 002877 451 ISPEN-LQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAY 528 (872)
Q Consensus 451 ~~~~~-~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~ 528 (872)
...++ ...++|.|+..++| ...||..+-.++..++..+. ...+.+.+...+.+ .+..+|..++
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~------------~~~v~~~l~~g~ks---KN~R~R~e~l 188 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG------------PLKMTPMLLDALKS---KNARQRSECL 188 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC------------HHHHHHHHHHGGGC---SCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC------------HHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 22333 57899999999999 88999999998888876652 23456666676652 3466676666
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHH
Q 002877 529 ETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTAD 608 (872)
Q Consensus 529 ~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 608 (872)
..+..++...| . ....++
T Consensus 189 ~~l~~li~~~G-------------------------------------------------------~------~~~~~l- 206 (266)
T 2of3_A 189 LVIEYYITNAG-------------------------------------------------------I------SPLKSL- 206 (266)
T ss_dssp HHHHHHHHHHC-------------------------------------------------------S------GGGGGG-
T ss_pred HHHHHHHHhcC-------------------------------------------------------C------Cccccc-
Confidence 66666665544 2 100011
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHH
Q 002877 609 QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPE 650 (872)
Q Consensus 609 ~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~ 650 (872)
.+.+.+..++++.+..||+.|+.++..+-...|+.+..++++
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 011667788999999999999999999988889887776654
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.28 E-value=2e-05 Score=79.54 Aligned_cols=312 Identities=13% Similarity=0.112 Sum_probs=167.5
Q ss_pred HHHHHHHHhhcCCC---hhHhhHHHHHHHHHHHhh-cCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCcc
Q 002877 92 QVKDLLLRTLASPV---PEARHTSAQVIAKIASIE-IPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQ 167 (872)
Q Consensus 92 ~i~~~Ll~~l~~~~---~~vr~~~~~~l~~i~~~~-~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 167 (872)
.+.+. .+.+++++ ...|..+..++..+...+ +|+.....++..+...++++ +...|+-+...+..+.+.- .+
T Consensus 26 ~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~-~e 101 (355)
T 3tjz_B 26 AVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSN--DPTLRRMCYLTIKEMSCIA-ED 101 (355)
T ss_dssp HHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHTTTS-SC
T ss_pred HHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCH-HH
Confidence 33334 36777763 334456666666655442 11112456788888899998 8888877776666666552 22
Q ss_pred ccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 002877 168 DLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVS 247 (872)
Q Consensus 168 ~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~ 247 (872)
. + -+.+.+.+-+++ +++-+|-.|+++++.+.. .++ .+.+...+.+++.+.++-+|+.|+-+...
T Consensus 102 ~-----i-Lv~Nsl~kDl~~--~N~~iR~lALRtL~~I~~---~~m-----~~~l~~~lk~~L~d~~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 102 V-----I-IVTSSLTKDMTG--KEDSYRGPAVRALCQITD---STM-----LQAIERYMKQAIVDKVPSVSSSALVSSLH 165 (355)
T ss_dssp G-----G-GGHHHHHHHHHS--SCHHHHHHHHHHHHHHCC---TTT-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred H-----H-HHHHHHHhhcCC--CcHhHHHHHHHHHhcCCC---HHH-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1 2 466777788888 789999999999998632 111 23477778889999999999999999999
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHH
Q 002877 248 IASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLL 327 (872)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 327 (872)
+....|+.+.. +++.+...+.+.++-+...|+..+..+.+... ..+..+++.+.
T Consensus 166 L~~~~pe~v~~----~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----------------------~a~~kLv~~l~ 219 (355)
T 3tjz_B 166 LLKCSFDVVKR----WVNEAQEAASSDNIMVQYHALGLLYHVRKNDR----------------------LAVSKMISKFT 219 (355)
T ss_dssp HTTTCHHHHHT----THHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH----------------------HHHHHHHHHHH
T ss_pred HhccCHHHHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHHhhch----------------------HHHHHHHHHHh
Confidence 98888877654 44444455677888888888888888876421 11223333322
Q ss_pred HHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCC---cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccch
Q 002877 328 ETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGD---EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKL 404 (872)
Q Consensus 328 ~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~ 404 (872)
...- . ..|... ..++.+....++ .....+++++...+++.+..+.+.|+.++-.+..... .
T Consensus 220 ----~~~l---~--~~~~q~----~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~-~-- 283 (355)
T 3tjz_B 220 ----RHGL---K--SPFAYC----MMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA-K-- 283 (355)
T ss_dssp ----SSCC---S--CHHHHH----HHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred ----cCCC---c--ChHHHH----HHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH-H--
Confidence 1100 0 114322 233333333322 2345678888888888888888888877777644211 1
Q ss_pred hHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHH
Q 002877 405 APLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVC 478 (872)
Q Consensus 405 ~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~ 478 (872)
.+...++.+...+..+++.+|..|+..|..+....+. .+...-..+..++.| |..++.-|.
T Consensus 284 --~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~-----------~v~~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 284 --ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS-----------AVTACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------------
T ss_pred --HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH-----------HHHHHHHHHHHHccCCcHhHHHHHH
Confidence 2234455566667788899999999999998876554 233333445566666 655544333
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.24 E-value=2.9e-05 Score=70.46 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=141.2
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhc
Q 002877 222 IMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLE-PYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFE 300 (872)
Q Consensus 222 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 300 (872)
.+..+..++.+.|+.++..++..+..++...++.+. ..++.+++-++....+.++.+...|+.++..+.+..+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp------ 107 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP------ 107 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC------
Confidence 567788889999999999999999999998766554 4466788888888899999999999999999988633
Q ss_pred CCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCC
Q 002877 301 NPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKS 380 (872)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 380 (872)
..+..+..+...+...+..++ --.+..+++.++.+ -.....+-+.+++.+.+.|.
T Consensus 108 -------------L~~~~y~Kl~~aL~dlik~~~---------~il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl~Sk 162 (265)
T 3b2a_A 108 -------------MGSKTFLKAAKTLVSLLESPD---------DMMRIETIDVLSKL---QPLEDSKLVRTYINELVVSP 162 (265)
T ss_dssp -------------BCHHHHHHHHHHHHHHTTSCC---------HHHHHHHHHHHHHC---CBSCCCHHHHHHHHHHHTCS
T ss_pred -------------CCHHHHHHHHHHHHHHhcCCC---------chHHHHHHHHhCcC---CcccchHHHHHHHHHHHhCC
Confidence 123334456777776665322 23455556666655 33555788899999999899
Q ss_pred CcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 002877 381 DWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFEL 440 (872)
Q Consensus 381 ~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 440 (872)
+.+.+-+|+.++-.++...... ..+..++.-+-..++.++|.++..|..++.++...
T Consensus 163 d~~vK~agl~~L~eia~~S~D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 163 DLYTKVAGFCLFLNMLNSSADS---GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SHHHHHHHHHHHHHHGGGCSSC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHHHHhhcccCCH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999998754312 23455666667777889999999999999988754
No 94
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.16 E-value=1e-05 Score=81.70 Aligned_cols=124 Identities=11% Similarity=0.139 Sum_probs=100.2
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCc
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDEN 423 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~ 423 (872)
...|+...-.+..++.. ++.++ .+.+.+.+-++++++.+|-.|+.+++.+...- .++.+.+.+.+++.|.+
T Consensus 82 ~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-------m~~~l~~~lk~~L~d~~ 152 (355)
T 3tjz_B 82 PTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-------MLQAIERYMKQAIVDKV 152 (355)
T ss_dssp HHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-------THHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-------HHHHHHHHHHHHcCCCC
Confidence 56788777777777666 55555 77888888888999999999999999998643 35678888999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHh
Q 002877 424 NHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~ 487 (872)
|.||.+|+.+..++....+ +.+...++.+-..+.| ++.|..+|..++..+.+.
T Consensus 153 pyVRk~A~l~~~kL~~~~p-----------e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 153 PSVSSSALVSSLHLLKCSF-----------DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHHHHHHHHHHHTTTCH-----------HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCH-----------HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 9999999999888775444 3556677777788888 999999998888888753
No 95
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.05 E-value=0.0016 Score=73.77 Aligned_cols=157 Identities=14% Similarity=0.122 Sum_probs=95.7
Q ss_pred chHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHH-HHHhcCCCcHHHHHHHHHHHHHHHhhccCCC
Q 002877 368 LVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDF-LLNAMRDENNHVKDTTAWTLSRIFELLHCPA 445 (872)
Q Consensus 368 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 445 (872)
.+.|.+.. ++++++..|..|+.+++.++... ....-.+. .++.. +...|.|++..||.+|+++|++++..-+..
T Consensus 35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d- 110 (684)
T 4gmo_A 35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD- 110 (684)
T ss_dssp TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH-
T ss_pred hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch-
Confidence 35566654 78899999999999999999742 33232333 55554 556789999999999999999987543210
Q ss_pred CCccccCcc-cHHHHHHHHHHHhhc---------------C-------hHHHHHHHHHHHHHHHhhccCCCCCCCchhhH
Q 002877 446 TGFSVISPE-NLQRILTVLLESIKD---------------A-------PNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYL 502 (872)
Q Consensus 446 ~~~~~~~~~-~~~~~l~~l~~~l~d---------------~-------~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~ 502 (872)
.... +-..+++.|...+.. . +.+...++.++..+++.. ...+....
T Consensus 111 -----~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s------~~~~~~v~ 179 (684)
T 4gmo_A 111 -----FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALAR------DEIHEAVA 179 (684)
T ss_dssp -----HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHH
T ss_pred -----HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHH
Confidence 0000 011234444333311 0 124456777888888763 22221111
Q ss_pred -HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 503 -TSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 503 -~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
...++.++..+...+.....++..+.++|..+.....
T Consensus 180 ~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~ 217 (684)
T 4gmo_A 180 TKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNL 217 (684)
T ss_dssp TCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCH
Confidence 2455666665543333445679999999999887644
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.97 E-value=0.0036 Score=57.09 Aligned_cols=225 Identities=9% Similarity=0.039 Sum_probs=158.5
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhh
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYE 254 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 254 (872)
+..+..+...+.+ .+..++..++.++..++...++..... ....+++.+...+.+.++.+...|++|+..++..-|-
T Consensus 32 e~~l~~L~~LL~d--kD~~vk~raL~~LeellK~~~~~l~~~-~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELAGE--DDETTRLRAFVALGEILKRADSDLRMM-VLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHSCHHHHHH-HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccccHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 3466677778877 788999999999999887543322221 1233788888889999999999999999999986542
Q ss_pred hhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhccc
Q 002877 255 VLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQE 334 (872)
Q Consensus 255 ~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 334 (872)
. ...+..+...+...+++.++-.+..+.+.+..+ . . -...+.++..++..+...+
T Consensus 109 ~-~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k--v---------------------~~~~~~V~~~l~sLl~Skd 163 (265)
T 3b2a_A 109 G-SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q--P---------------------LEDSKLVRTYINELVVSPD 163 (265)
T ss_dssp C-HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C--B---------------------SCCCHHHHHHHHHHHTCSS
T ss_pred C-HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C--c---------------------ccchHHHHHHHHHHHhCCC
Confidence 2 233445666666777778887888888776665 1 1 0011356677777773211
Q ss_pred CCcccCCCCcchhhhHHHHHHHHHhhcC-CcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHH
Q 002877 335 EDQDQDDSIWNISMAGGTCLGLVARTVG-DEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFD 413 (872)
Q Consensus 335 ~d~~~d~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~ 413 (872)
-.+..+|..++..++...+ ..++..++.-+.+.++++++..++-|+.++-.+....-...+.+.+..+..
T Consensus 164 ---------~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~ 234 (265)
T 3b2a_A 164 ---------LYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR 234 (265)
T ss_dssp ---------HHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH
Confidence 5678888899999888776 567888888899999999999999999999988876444445544555555
Q ss_pred HHHHhc-CCCcHHHHHHHHHHHHH
Q 002877 414 FLLNAM-RDENNHVKDTTAWTLSR 436 (872)
Q Consensus 414 ~l~~~l-~d~~~~vr~~a~~~l~~ 436 (872)
.+-... -...|.+|..|-.....
T Consensus 235 ~v~~l~~~~~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 235 IVDGLVYREGAPIIRLKAKKVSDL 258 (265)
T ss_dssp HHHHGGGCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Confidence 444444 46678888877555443
No 97
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.97 E-value=3.9e-06 Score=72.70 Aligned_cols=122 Identities=16% Similarity=0.260 Sum_probs=81.7
Q ss_pred cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 364 EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 364 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
...+.-.+.+...+.+++|.+|..++.+|+.+.. . . ++.+.+.++|+++.||..|+++++++..
T Consensus 8 ~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~-------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 8 HHHSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E-------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp -------------CCSSCCCSSSSCCSSTTSCSS----T-------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred ccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h-------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 3445556777888889999999988877765532 1 1 4778888999999999999999987641
Q ss_pred CCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchh
Q 002877 444 PATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSK 522 (872)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~ 522 (872)
+..++.|...+.| ++.||..|+++++.+.. +..++.|...++ + ++..
T Consensus 72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~--d-~~~~ 119 (131)
T 1te4_A 72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------------ERVRAAMEKLAE--T-GTGF 119 (131)
T ss_dssp -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTT--S-CCTH
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHh--C-CCHH
Confidence 2456777777778 99999999999987641 245667777775 2 3466
Q ss_pred HHHHHHHHHHH
Q 002877 523 LRSAAYETLNE 533 (872)
Q Consensus 523 vr~~a~~al~~ 533 (872)
||..+..+|+.
T Consensus 120 vr~~A~~aL~~ 130 (131)
T 1te4_A 120 ARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHh
Confidence 78888887753
No 98
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.97 E-value=0.00035 Score=81.32 Aligned_cols=404 Identities=11% Similarity=0.048 Sum_probs=211.1
Q ss_pred HHHHHHHHhhcCCChhHhhHHHHHHHHHHHhh--cCC----CCchHHHHHHHHhhc-cCCccHHHHHHHHHHHHHhhhcc
Q 002877 92 QVKDLLLRTLASPVPEARHTSAQVIAKIASIE--IPQ----KQWPELIRSLLNNMT-QQDSLAALKQATLETLGYVCEEI 164 (872)
Q Consensus 92 ~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~--~p~----~~~~~ll~~l~~~l~-~~~~~~~~r~~al~~l~~l~~~~ 164 (872)
.+++.+-....+.+..-...+|++++-+.+.. +|. ..|.-+.|.+...+. .- +++....-..++..++...
T Consensus 508 ~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~l--t~et~~~W~~~i~~~~~~~ 585 (997)
T 1vsy_5 508 DLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYEL--NHDAFEIWSTLAWWLPAVV 585 (997)
T ss_dssp GHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCC--CTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHhcCC
Confidence 35555555666777888899999999987652 221 145667788888887 34 5666666777777777776
Q ss_pred CccccchhhHHHHHHHHHh--c-ccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHH
Q 002877 165 SHQDLVQDEVNAVLTAVVQ--G-MNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAA 241 (872)
Q Consensus 165 ~~~~l~~~~~~~l~~~l~~--~-l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 241 (872)
++. -...++..+.. . +.-++.+.-.....+..|..++....-.+.. . +.++..+. +.++...+|..+
T Consensus 586 Dpr-----R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~--~-~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 586 DLR-----RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD--V-GKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp CGG-----GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC--C-HHHHHHCC--SCCSCHHHHHHH
T ss_pred Chh-----hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc--H-HHHHHHHH--hCCChHHHHHHH
Confidence 532 33445555522 1 1111111111122333444433322222221 1 11333333 667889999999
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHH---hcC----CChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCC----
Q 002877 242 FECLVSIASTYYEVLEPYMQTLFELTSNA---VKG----DEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSP---- 310 (872)
Q Consensus 242 ~~~l~~l~~~~~~~~~~~l~~l~~~~~~~---~~~----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~---- 310 (872)
...|..+.......--+..+.+++..... +.- ..+.+.....+....+........ . ...+...+.
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~-~--~~~~~~~~s~y~~ 732 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVV-G--LNPQQFIKTDYFY 732 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTS-S--CCSTTTTTSHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhccc-c--cCccccchHHHHH
Confidence 99998877654200001122333222111 000 011111101111111110000000 0 000000000
Q ss_pred ----------------chHHHHHhHHh-hHHHHHHHHhcccCCcccCCCCcchhhh-HHHHHHHHHhhc-CCcchhchHH
Q 002877 311 ----------------NYHFIEKARSS-LVPMLLETLLKQEEDQDQDDSIWNISMA-GGTCLGLVARTV-GDEVVPLVMP 371 (872)
Q Consensus 311 ----------------~~~~~~~~l~~-l~~~l~~~l~~~~~d~~~d~~~~~~r~~-a~~~l~~l~~~~-~~~~~~~l~~ 371 (872)
......++++. ++|.++.. .++.|+ ..+... |..++..++... +....+.++.
T Consensus 733 ~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l----~~~~d~----~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~ 804 (997)
T 1vsy_5 733 RTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGL----VKHKDV----CALASLDPVRLYAGLGYMPIRKNHVAAIVD 804 (997)
T ss_dssp HHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTT----SSCSHH----HHHTTCCSHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHH----hhcCcH----HHHHhhHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00112223333 34433322 111111 123333 455666665443 3455566777
Q ss_pred HHHhhcc-CCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhc-cCCCCCc
Q 002877 372 FVEANIV-KSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDEN-NHVKDTTAWTLSRIFELL-HCPATGF 448 (872)
Q Consensus 372 ~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~-~~~~~~~ 448 (872)
.+.+... +++| .|.+++..+..+.-....-........+...++..|.|++ ..||+.|+.+|+-+.... ..
T Consensus 805 ~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~----- 878 (997)
T 1vsy_5 805 YVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE----- 878 (997)
T ss_dssp HSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH-----
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch-----
Confidence 7776666 6799 9999988776654311101111123578889999999999 999999999999887544 20
Q ss_pred cccCcccHHHHHHHHHHHh-h-----------c-ChHHHHHHHHHHHHHHHhhccCCCCCCCc--hhhHHHHHHHHHHhh
Q 002877 449 SVISPENLQRILTVLLESI-K-----------D-APNVAEKVCGAIYYLAQGYEDAGPSSSLL--SPYLTSIIAELLRAA 513 (872)
Q Consensus 449 ~~~~~~~~~~~l~~l~~~l-~-----------d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l--~~~~~~il~~l~~~l 513 (872)
.....++..+...+ . + ....+.+|+-+|+.++..+ |..+ .+++++++..|....
T Consensus 879 -----~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~------Py~vP~P~w~P~~l~~La~~~ 947 (997)
T 1vsy_5 879 -----QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF------PYVFPLPPWIPKNLSNLSSWA 947 (997)
T ss_dssp -----HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC------SCCSSCCTHHHHHHHHHHTTS
T ss_pred -----hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC------CCCCCCCcccHHHHHHHHHHh
Confidence 11222333222222 1 1 1146778899999999987 7776 689999998888777
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhcCC
Q 002877 514 DRTDVGGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 514 ~~~~~~~~~vr~~a~~al~~l~~~~~ 539 (872)
..+ ..++..+-++++.+-+...
T Consensus 948 ~~~----~~i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 948 RTS----GMTGNAAKNTISEFKKVRA 969 (997)
T ss_dssp SSC----SSHHHHTHHHHHHHHHHTS
T ss_pred CCC----CchHHHHHHHHHHHHhccc
Confidence 632 2368888888888877665
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.89 E-value=0.045 Score=59.04 Aligned_cols=332 Identities=10% Similarity=0.075 Sum_probs=193.7
Q ss_pred CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 002877 128 QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 207 (872)
.=.+-++.|.+.+++.+ -.+-|+.|+..|..+.+++. . ..-..-++.++..|+.+..+.++-..++++|..++.
T Consensus 18 s~~etI~~L~~Rl~~~t-l~eDRR~Av~~Lk~~sk~y~-~----~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~ 91 (651)
T 3grl_A 18 TEAETIQKLCDRVASST-LLDDRRNAVRALKSLSKKYR-L----EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIIS 91 (651)
T ss_dssp CHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTTTTT-T----HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHC
T ss_pred ChhhHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHhH-H----HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 45677888888887752 45678899999999988773 2 223344666667776655677888889999987653
Q ss_pred HHHhh------------hhhhh---H--HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHH---HHHHHH
Q 002877 208 FALTN------------FQNEM---E--RNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQ---TLFELT 267 (872)
Q Consensus 208 ~~~~~------------~~~~~---~--~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~---~l~~~~ 267 (872)
.-... +..+. + .+.-+..+..++++.+..+|..++++|..++...+......+- .=++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~L 171 (651)
T 3grl_A 92 NDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRL 171 (651)
T ss_dssp CC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHH
T ss_pred CCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHH
Confidence 11110 00000 0 1123667788889999999999999999999888775444333 235566
Q ss_pred HHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchh
Q 002877 268 SNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNIS 347 (872)
Q Consensus 268 ~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r 347 (872)
+..+.+..+-+|-.++-++..+++....++. ++ .++..++.++..+..... - + + --+-
T Consensus 172 v~lL~d~rE~iRneallLL~~Lt~~n~~iQk---------------lV--AFEnaFe~Lf~Ii~~Eg~-~-~--G-givv 229 (651)
T 3grl_A 172 MDLLADSREVIRNDGVLLLQALTRSNGAIQK---------------IV--AFENAFERLLDIITEEGN-S-D--G-GIVV 229 (651)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTTCHHHHH---------------HH--HHTTHHHHHHHHHHHHTG-G-G--S-HHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHhcCCHHHHH---------------HH--HHhccHHHHHHHHHhcCC-C-c--c-chhH
Confidence 7778888899999999999999886543321 11 233566777777754221 0 0 0 1122
Q ss_pred hhHHHHHHHHHhhcC--------CcchhchHHHHHhhccCCCcchHH-----HHHHHHHHhhcCCCcc----chhHh-H-
Q 002877 348 MAGGTCLGLVARTVG--------DEVVPLVMPFVEANIVKSDWRCRE-----AATYAFGSVLEGPTID----KLAPL-V- 408 (872)
Q Consensus 348 ~~a~~~l~~l~~~~~--------~~~~~~l~~~l~~~l~~~~~~~r~-----aal~~l~~i~~~~~~~----~~~~~-l- 408 (872)
.-+..++..+.+..+ ...++.+.+.+...-....|..+. +++.++..+.....+. ..+.. .
T Consensus 230 ~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 230 EDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 233344444443321 123444444443211123476433 2344555555543210 01111 1
Q ss_pred HhHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhccC--CCCCc-cccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHH
Q 002877 409 HAGFDFLLNAMRDE--NNHVKDTTAWTLSRIFELLHC--PATGF-SVISPENLQRILTVLLESIKD--APNVAEKVCGAI 481 (872)
Q Consensus 409 ~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~--~~~~~-~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al 481 (872)
..+++.+++.+..+ ...++..|+.+++.+....+. ..|.. .....+-.+.++..++..+.+ ...+|.+++.++
T Consensus 310 ~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 310 CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 25667777776544 567899999998887643321 00000 000001123455555555555 678899999999
Q ss_pred HHHHHh
Q 002877 482 YYLAQG 487 (872)
Q Consensus 482 ~~l~~~ 487 (872)
..++..
T Consensus 390 ~ay~~~ 395 (651)
T 3grl_A 390 QCFLYK 395 (651)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 988855
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.86 E-value=0.00057 Score=70.55 Aligned_cols=247 Identities=11% Similarity=0.051 Sum_probs=160.7
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCc-----cccchhhHHH-HHHHHHhcccC---CCCCHHHHHHHHHHH
Q 002877 132 LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISH-----QDLVQDEVNA-VLTAVVQGMNL---AEHSAEVRLAATRAL 202 (872)
Q Consensus 132 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-----~~l~~~~~~~-l~~~l~~~l~~---~~~~~~vr~~al~~l 202 (872)
+.+.|...+-++ ++..|++|...|..+++.-+. +.......-. ++=..+..+.| +..-..||+++.++|
T Consensus 175 fcE~L~~DLFdp--~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSY--EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 888888888888 999999999999999887631 1110111111 11122233333 123468999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHH
Q 002877 203 YNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQA 282 (872)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~a 282 (872)
+.+ .++++.+ . ++..+...+..+.+++|..++-.+.-+ .+.+.. ++.+++.++..+.+.+++|+..|
T Consensus 253 GaL-~hLp~e~------~-IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 253 SRI-YPLIGPN------D-IIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HHH-TTTSCSC------C-HHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHH-HhCChhH------H-HHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHHH
Confidence 997 5555431 1 333333455678999999999888776 222222 78889999999999999999999
Q ss_pred HHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcC
Q 002877 283 VEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVG 362 (872)
Q Consensus 283 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~ 362 (872)
.+.|..++. + ..++.++..+-..+.+.+ | - ..-.....+.|..++..-.
T Consensus 320 AetLiPIA~--p----------------------~~l~~LL~iLWd~L~~LD-D----L--SASTgSVMdLLAkL~s~p~ 368 (800)
T 3oc3_A 320 AELLCHFPI--T----------------------DSLDLVLEKCWKNIESEE-L----I--SVSKTSNLSLLTKIYRENP 368 (800)
T ss_dssp HHHHTTSCC--S----------------------STHHHHHHHHHHHHHTCC-S----C--CTTHHHHHHHHHHHHHHCT
T ss_pred HHHhhhhcc--h----------------------hhHHHHHHHHHHHhhhhc-c----c--chhhHHHHHHHHHHHcCCc
Confidence 988877771 1 123457777777776441 1 1 1122333556666665443
Q ss_pred C-cchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh-cCCCcHHHHHHHHHHHH
Q 002877 363 D-EVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA-MRDENNHVKDTTAWTLS 435 (872)
Q Consensus 363 ~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~ 435 (872)
. ...|.++|.+..++.++-..+|.+++.++..+.. ..++..+.+. +-++++.|+..+..+..
T Consensus 369 ~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~-----------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 369 ELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE-----------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC-----------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 2335677777778888888999999998877761 1233333333 35778889988877764
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.85 E-value=0.00067 Score=70.05 Aligned_cols=225 Identities=12% Similarity=0.082 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHh-cccCCcccCC
Q 002877 263 LFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLL-KQEEDQDQDD 341 (872)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~-~~~~d~~~d~ 341 (872)
+++.+...+-++..++|.-|.--+..+.+....- .|+....+. .+.--++..+. +.=.|.-.|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~~~~N~--------DLAvRLLCVLALDRFGDYVSDq 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQIRVDS--------KLFSKIYEILVTDKFNDFVDDR 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CCCCCCT--------THHHHHHHHHHHBCCBBCSSSS
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------CceeccccH--------HHHHHHHHHHHhccccccccCe
Confidence 6666677778899999998887787877653210 011111111 22233333332 2222332333
Q ss_pred CCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCC
Q 002877 342 SIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRD 421 (872)
Q Consensus 342 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d 421 (872)
..--||..++++|+.+ ...++. . .++..+...+..+.|.+|++++.++..+.+-. .. ++.+++.++.+|.|
T Consensus 240 VVAPVRETaAQtLGaL-~hLp~e-~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-----~~-Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 240 TVAPVRDAAAYLLSRI-YPLIGP-N-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFV-----ED-KDGLCRKLVSLLSS 310 (800)
T ss_dssp CBCHHHHHHHHHHHHH-TTTSCS-C-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGC-----CC-HHHHHHHHHHHTTC
T ss_pred eeeehHHHHHHHHHHH-HhCChh-H-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHH-----HH-HHHHHHHHHhhcCC
Confidence 3457899999999999 777766 3 33333334557788999999999999883322 22 78999999999999
Q ss_pred CcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc--C-hHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 002877 422 ENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD--A-PNVAEKVCGAIYYLAQGYEDAGPSSSLL 498 (872)
Q Consensus 422 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d--~-~~v~~~a~~al~~l~~~~~~~~~~~~~l 498 (872)
++..||..|+.+|.-++ . +..++.++..+..+|.+ + ..........|..++..-. ....
T Consensus 311 ~DDDVRAVAAetLiPIA--~-----------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-----~a~~ 372 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP--I-----------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-----ELSI 372 (800)
T ss_dssp SSHHHHHHHHHHHTTSC--C-----------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-----TCCC
T ss_pred cccHHHHHHHHHhhhhc--c-----------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-----cccc
Confidence 99999999999987665 1 24677788877777764 2 1112333455566665421 1111
Q ss_pred hhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 002877 499 SPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVV 535 (872)
Q Consensus 499 ~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~ 535 (872)
. +..+|.+.+.+.. .-..||.++++++..+.
T Consensus 373 d---p~LVPRL~PFLRH---tITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 373 P---PERLKDIFPCFTS---PVPEVRTSILNMVKNLS 403 (800)
T ss_dssp C---SGGGGGTGGGGTC---SSHHHHHHHHHHTTTCC
T ss_pred C---hHHHHHHHhhhcC---CcHHHHHHHHHHHHHHH
Confidence 1 2667777777763 34678998888886655
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.85 E-value=0.0015 Score=70.18 Aligned_cols=329 Identities=10% Similarity=0.097 Sum_probs=186.5
Q ss_pred hhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccC--CCcchHHHHHHHHHHhhcC
Q 002877 321 SLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVK--SDWRCREAATYAFGSVLEG 398 (872)
Q Consensus 321 ~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~i~~~ 398 (872)
.-++.|...+....- ..-|++|...|+.+++.++..+...-++.+...+.. .+...-.+++-.|..+...
T Consensus 21 etI~~L~~Rl~~~tl--------~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 21 ETIQKLCDRVASSTL--------LDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHHCCS--------HHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhhccc--------hhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 455666666643211 234899999999999988877666555555555543 2444555666666544332
Q ss_pred CCcc-----------chh-----HhH--HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH---H
Q 002877 399 PTID-----------KLA-----PLV--HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL---Q 457 (872)
Q Consensus 399 ~~~~-----------~~~-----~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~---~ 457 (872)
...+ .+. .++ ++-++.++..|+..+..+|..+..+|..++..-++ ...+.+ +
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~-------~~Q~~Il~~p 165 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP-------QVQQIILVSP 165 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH-------HHHHHHHHST
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH-------HHHHHHHhCc
Confidence 2110 111 111 25678899999999999999999999999876543 122222 2
Q ss_pred HHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchh--hHHHHHHHHHHhhccCCC-cchhHHHHHHHHHHH
Q 002877 458 RILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSP--YLTSIIAELLRAADRTDV-GGSKLRSAAYETLNE 533 (872)
Q Consensus 458 ~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~--~~~~il~~l~~~l~~~~~-~~~~vr~~a~~al~~ 533 (872)
.-++.|+..|.| ...+|..+...|..++++. ..+.. -+++.++.++..+..... +...+-..++..+..
T Consensus 166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n-------~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 166 MGVSRLMDLLADSREVIRNDGVLLLQALTRSN-------GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp THHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC-------HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC-------HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 456778888888 8999999999999998763 22222 234566777777753221 122345677777788
Q ss_pred HHhcCCCcccHHHHHH--HHHHHHHHHHHHHhhhhcCcchhhhHHHHHHH---HHHHHHHHHHHcCCCccchhhchhhH-
Q 002877 534 VVRCSNITETSQIIAE--LLPAIMGRLGQTLELQIVSSDDREKQGDLQAS---LCGVLQVIIQKFSSTDATKSFILQTA- 607 (872)
Q Consensus 534 l~~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~~~~~~~~~~~~~~~~~~- 607 (872)
+.+..+ .+ +.++.+ .+|.+...+.. ..+...+......+ ++.++..++..-+....+...-....
T Consensus 239 LLr~N~-sN-Q~~FrEt~~i~~L~~LL~~-------~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 239 LLKNNN-SN-QNFFKEGSYIQRMKPWFEV-------GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHTTCH-HH-HHHHHHTTCGGGGGGGGCC-------CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHhcCH-HH-HHHHHHcCCHHHHHHHhCC-------CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 877653 22 233332 33333322210 11111111111122 23333333322111000000000111
Q ss_pred HHHHHHHHHHHccC--ChhHHHHHHHHHHHHHHHhh---hHHHhhh-------HHHHHHHHhhhcccchHhHHHHHHHHH
Q 002877 608 DQIMVLFLRVFACR--SSTVHEEAMLAIGALAYATG---PEFAKYM-------PEFYQYLQMGLQNSEEYQVCAITVGVV 675 (872)
Q Consensus 608 ~~l~~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~---~~~~~~l-------~~i~~~l~~~l~~~~~~~v~~~a~~~l 675 (872)
..++..+++.+... ...++..|+.+++.++.... +.|...- +.++..+...+.+.....+|.+|+.++
T Consensus 310 ~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 310 CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 13566667776554 56789999999999876543 2333221 345555666565556678999999999
Q ss_pred HHHHH
Q 002877 676 GDVCR 680 (872)
Q Consensus 676 ~~l~~ 680 (872)
..+..
T Consensus 390 ~ay~~ 394 (651)
T 3grl_A 390 QCFLY 394 (651)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88864
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.70 E-value=0.03 Score=63.44 Aligned_cols=156 Identities=12% Similarity=0.124 Sum_probs=85.3
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHh
Q 002877 132 LIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALT 211 (872)
Q Consensus 132 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 211 (872)
++| +++.++++ ++..|..|+.+++.+++.-....+ ...-..+.+.+...+.| ++.+||..|..+|.++....+.
T Consensus 36 i~P-ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l-~~~~~~v~~ll~~lL~D--~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 36 ILP-VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKL-LLREQVVHIVLTETLTD--NNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp THH-HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHH-HHHTTHHHHHHHTTTTC--SCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHH-HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHH-HHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHhhcCc
Confidence 344 34568888 888999999999999975211111 11222344456677888 7899999999999987643222
Q ss_pred hhhhhhHHHHHHHHHHHhhc--------------CCcH-------HHHHHHHHHHHHHHHhhhhhhHHh-----HHHHHH
Q 002877 212 NFQNEMERNYIMKVVCETAK--------------SKEV-------EIRQAAFECLVSIASTYYEVLEPY-----MQTLFE 265 (872)
Q Consensus 212 ~~~~~~~~~~ll~~l~~~~~--------------~~~~-------~~~~~~~~~l~~l~~~~~~~~~~~-----l~~l~~ 265 (872)
+......+.-++..+...+. .... ++...++.++..+++...+.+... +..++.
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~ 189 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLF 189 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHH
Confidence 21111111112222221111 0111 223345566666665544433222 223333
Q ss_pred HHHHHhcCCChHHHHHHHHhHhHHhHhhh
Q 002877 266 LTSNAVKGDEEAVALQAVEFWSSICDEEI 294 (872)
Q Consensus 266 ~~~~~~~~~~~~~~~~al~~l~~l~~~~~ 294 (872)
.+... .....+++..|++++..+++...
T Consensus 190 ~L~~~-~~~~~~v~~~a~~~L~~ls~dn~ 217 (684)
T 4gmo_A 190 RLISA-DIAPQDIYEEAISCLTTLSEDNL 217 (684)
T ss_dssp HHHHH-CCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-CCCcHHHHHHHHHHHHHHhccCH
Confidence 33221 22356799999999999987633
No 104
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.66 E-value=7.8e-05 Score=64.37 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=80.6
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCc
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDEN 423 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~ 423 (872)
+.+|..|..+|..+ ++.. .+.+...+.+++|.+|..++.+++.+.. +..++.+...+.|++
T Consensus 26 ~~vR~~A~~~L~~~----~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~ 86 (131)
T 1te4_A 26 KWVRRDVSTALSRM----GDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDS 86 (131)
T ss_dssp CCSSSSCCSSTTSC----SSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh----CchH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCC
Confidence 66787766666532 3222 3777788889999999999999998753 235677888888999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHH
Q 002877 424 NHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYY 483 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~ 483 (872)
+.||..++++|+++.. +..++.|...+.| ++.||..|+.+|..
T Consensus 87 ~~VR~~A~~aL~~~~~-----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 87 GFVRSGAARSLEQIGG-----------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp THHHHHHHHHHHHHCS-----------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 9999999999998751 3467778888888 99999999988754
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.60 E-value=0.00066 Score=64.25 Aligned_cols=198 Identities=10% Similarity=0.067 Sum_probs=124.8
Q ss_pred chHHHHHhhccCCCc--chHHHHHHHHHHhhcCCCccchhHhH-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCC
Q 002877 368 LVMPFVEANIVKSDW--RCREAATYAFGSVLEGPTIDKLAPLV-HAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCP 444 (872)
Q Consensus 368 ~l~~~l~~~l~~~~~--~~r~aal~~l~~i~~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 444 (872)
..+|.+.+.+.+++. ..+..+..++..++.+.. +.-.... ...+|.+++.|.++++.++..|+|+|..++....+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~-~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~- 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKS-EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND- 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-
Confidence 446777788888877 777777788888875431 2111222 26789999999999999999999999999853221
Q ss_pred CCCccccCcccH--HHHHHHHHHHhh-c-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhc-----c
Q 002877 445 ATGFSVISPENL--QRILTVLLESIK-D-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAAD-----R 515 (872)
Q Consensus 445 ~~~~~~~~~~~~--~~~l~~l~~~l~-d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~-----~ 515 (872)
....+ ...++.|+..+. . +..+++.|+.+|.++.... ..-......-++.|...+. .
T Consensus 86 -------nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-------~~k~~i~~~~i~~Lv~ll~~p~sG~ 151 (233)
T 3tt9_A 86 -------NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-------KLKNLMITEALLTLTENIIIPFSGW 151 (233)
T ss_dssp -------HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-------GGHHHHHHHHHHHHCCCCCHHHHCC
T ss_pred -------HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-------hhHHHHHhccHHHHHHHHhccccCC
Confidence 11111 246788888887 3 7899999999999997542 1112233444565554332 1
Q ss_pred CC--------CcchhHHHHHHHHHHHHHhcCCCcccHHHH---HHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHH
Q 002877 516 TD--------VGGSKLRSAAYETLNEVVRCSNITETSQII---AELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCG 584 (872)
Q Consensus 516 ~~--------~~~~~vr~~a~~al~~l~~~~~~~~~~~~~---~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (872)
.+ ..+..++..+..+|..+....+ +....+ +.+++.++..+...+...-. ....++.+..
T Consensus 152 ~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~--~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~-------~~k~~En~v~ 222 (233)
T 3tt9_A 152 PEGDYPKANGLLDFDIFYNVTGCLRNMSSAGA--DGRKAMRRCDGLIDSLVHYVRGTIADYQP-------DDKATENCVC 222 (233)
T ss_dssp CGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCH--HHHHHHHTSTTHHHHHHHHHHHHHHTTCT-------TCHHHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCCcHHHHHHHHHhhhhcccc-------hhHHHHHHHH
Confidence 00 1234678889999988876542 222222 24778888888766432211 1123455666
Q ss_pred HHHHHH
Q 002877 585 VLQVII 590 (872)
Q Consensus 585 ~l~~l~ 590 (872)
+|.++.
T Consensus 223 ~L~nLs 228 (233)
T 3tt9_A 223 ILHNLS 228 (233)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666653
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.55 E-value=0.011 Score=60.52 Aligned_cols=314 Identities=10% Similarity=0.104 Sum_probs=170.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhcc
Q 002877 412 FDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYED 490 (872)
Q Consensus 412 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~ 490 (872)
...++...+. ++..+.-|+..|.++.+.+++ .-+..+++++....| +..||..|...|..+|+.
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~-----------l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--- 95 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPE-----------LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--- 95 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGG-----------GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh-----------hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---
Confidence 3444554443 588999999999999988875 678899999999998 999999999988888742
Q ss_pred CCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcc
Q 002877 491 AGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSD 570 (872)
Q Consensus 491 ~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 570 (872)
.++..+.+.|.+.++..+ ..-+..+-.+|..+.+..+ . . .+..++..+.+ +
T Consensus 96 ---------~~i~kiaDvL~QlLqtdd---~~E~~~V~~sL~sllk~Dp-k---~----tl~~lf~~i~~-------~-- 146 (507)
T 3u0r_A 96 ---------ENLPRVADILTQLLQTDD---SAEFNLVNNALLSIFKMDA-K---G----TLGGLFSQILQ-------G-- 146 (507)
T ss_dssp ---------TCHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHCH-H---H----HHHHHHHHHHH-------S--
T ss_pred ---------hhhhhHHHHHHHHHhccc---hHHHHHHHHHHHHHHhcCh-H---H----HHHHHHHHHcc-------c--
Confidence 458888999999998544 2226677778888877665 1 1 12222222221 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHH-HHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhH
Q 002877 571 DREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTAD-QIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMP 649 (872)
Q Consensus 571 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~ 649 (872)
...+|..++..|..-+..++.+ .+...++ -+...+...+.+-...--...+..++.+ ...+ .. .-..
T Consensus 147 ----~e~~Rer~lkFi~~kl~~l~~~-----~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~l-kl~~-t~-~g~q 214 (507)
T 3u0r_A 147 ----EDIVRERAIKFLSTKLKTLPDE-----VLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGL-KSLQ-TV-SGRQ 214 (507)
T ss_dssp ----CHHHHHHHHHHHHHHGGGSCTT-----TSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTS-GGGS-SH-HHHH
T ss_pred ----chHHHHHHHHHHHHHHhhcchh-----hccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-cccc-Cc-hHHH
Confidence 1346777777777666666664 3443333 3445555556443332222233333222 1111 11 2223
Q ss_pred HHHHHHHhhhc-----ccchHhHHHHHHHHHHHHHHHh--cCCccccHHHHHHHHHHHhcCC---CCCCCCchhHHHHHH
Q 002877 650 EFYQYLQMGLQ-----NSEEYQVCAITVGVVGDVCRAL--DDKVLPFCDGIMSLLLNALSNS---QLNRSVKPPILSCFG 719 (872)
Q Consensus 650 ~i~~~l~~~l~-----~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~---~~~~~~~~~~~~~l~ 719 (872)
.+++.+..... +..+.+.....+.|+..-..-+ +..-..|+.-+...+++.++.= ....+.+-..+.+++
T Consensus 215 eLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lA 294 (507)
T 3u0r_A 215 QLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294 (507)
T ss_dssp HHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHH
Confidence 55555544321 1112333333333332221111 1111223333333344444421 111236778999999
Q ss_pred HHHHhhc--cchhhhHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHhHhhccch
Q 002877 720 DIALAIG--VHFEKYVPHALQMMQEAAKACAQLDMEDEELIDYGNQLRSSIFEAYSGILQGFKS 781 (872)
Q Consensus 720 ~l~~~~~--~~~~~~l~~i~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 781 (872)
.++..+| +.-...++.++..|...+...+...+++++..+-..++..+-++|+..+++.++.
T Consensus 295 E~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~ 358 (507)
T 3u0r_A 295 EMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGR 358 (507)
T ss_dssp HHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHT
T ss_pred HHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhh
Confidence 9999988 4555688888888877654322111111111111123455566777666665543
No 107
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=97.37 E-value=0.041 Score=55.79 Aligned_cols=265 Identities=11% Similarity=0.114 Sum_probs=150.2
Q ss_pred CCCcchHHHHHHHHHHhhcCC--CccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCccc
Q 002877 379 KSDWRCREAATYAFGSVLEGP--TIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPEN 455 (872)
Q Consensus 379 ~~~~~~r~aal~~l~~i~~~~--~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 455 (872)
++.|..-....-.+..+.... .++..+.+++ ..+-.++..++.++|+-|.....++.++...+.. ...+
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~--------~R~~ 166 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG--------LRAY 166 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH--------HHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh--------hHHH
Confidence 456887777776666555442 1222344555 4677788999999999999998888887654442 2344
Q ss_pred HHHHHHHHHH-Hhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHHHhhccCCCcchhHHHHHHHH
Q 002877 456 LQRILTVLLE-SIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLLS-PYLTSIIAELLRAADRTDVGGSKLRSAAYET 530 (872)
Q Consensus 456 ~~~~l~~l~~-~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~-~~~~~il~~l~~~l~~~~~~~~~vr~~a~~a 530 (872)
+.+.+..++- .+.+ ...+ ......++.+..++. -.+. .+..-+...++.......- ...-.....|
T Consensus 167 Irk~innif~~fiye~e~~~GI-aeLLeilgsIinGfa------~PLkeehk~fl~~vLlPLHk~~~~--~~y~~qL~yc 237 (403)
T 3fga_B 167 IRKQINNIFYRFIYETEHHNGI-AELLEILGSIINGFA------LPLKEEHKIFLLKVLLPLHKVKSL--SVYHPQLAYC 237 (403)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTH-HHHHHHHHHHHHHCC------SSCCHHHHHHHHHTTTGGGGSTTG--GGTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCCH-HHHHHHHHHHHcccC------CCchHHHHHHHHHHHHHHHcCCcc--hhhHHHHHHH
Confidence 4443333332 2222 2333 245666777777762 2222 2322233333333332111 1112345555
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHH
Q 002877 531 LNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQI 610 (872)
Q Consensus 531 l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l 610 (872)
+..++...+ .....++..++..|-.+. ..-....+.-+..++..+++. .+.....++
T Consensus 238 v~qf~eKDp-----~L~~~vi~~LLk~WP~tn-------------s~KevlFL~Ele~iLe~~~~~-----~f~~i~~~l 294 (403)
T 3fga_B 238 VVQFLEKDS-----TLTEPVVMALLKYWPKTH-------------SPKEVMFLNELEEILDVIEPS-----EFVKIMEPL 294 (403)
T ss_dssp HHHHHHHCG-----GGHHHHHHHHHHTCCSSC-------------HHHHHHHHHHHHHHHTTCCHH-----HHHHHHHHH
T ss_pred HHHHHHhCc-----hhHHHHHHHHHHhCCCCC-------------cHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHH
Confidence 555665554 222333334444333210 011123345555566555543 677778899
Q ss_pred HHHHHHHHccCChhHHHHHHHHHH--HHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhc
Q 002877 611 MVLFLRVFACRSSTVHEEAMLAIG--ALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALD 683 (872)
Q Consensus 611 ~~~l~~~l~~~~~~v~~~a~~~l~--~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 683 (872)
+..+..++.+.+..|-+.|+..+. .+.....+.....++-++|.+.+...++.+..++..+..++..+...-+
T Consensus 295 f~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 295 FRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 999999999999999999988773 3333333334445566677777766777777788888888776654433
No 108
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=97.09 E-value=0.049 Score=56.31 Aligned_cols=261 Identities=11% Similarity=0.111 Sum_probs=142.1
Q ss_pred CCcchHHHHHHHHHHhhcC--CCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH
Q 002877 380 SDWRCREAATYAFGSVLEG--PTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL 456 (872)
Q Consensus 380 ~~~~~r~aal~~l~~i~~~--~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (872)
+.|..-......+..+... ..++..+.+++ ..+-.|+..++.++|+-|.....++.++...+.. ...++
T Consensus 129 ~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~--------~R~~I 200 (449)
T 2npp_B 129 AAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG--------LRAYI 200 (449)
T ss_dssp TTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTT--------THHHH
T ss_pred ccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 4565555555555444432 21233344555 5777888899999999999999998887765543 34455
Q ss_pred HHHHHHHH-HHhhc---ChHHHHHHHHHHHHHHHhhccCCCCCCCchh-hHHHHHHHHHHhhccCCCcchhHHHHHHHHH
Q 002877 457 QRILTVLL-ESIKD---APNVAEKVCGAIYYLAQGYEDAGPSSSLLSP-YLTSIIAELLRAADRTDVGGSKLRSAAYETL 531 (872)
Q Consensus 457 ~~~l~~l~-~~l~d---~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~-~~~~il~~l~~~l~~~~~~~~~vr~~a~~al 531 (872)
...+..++ ..+.+ ...+ ......++.+..++ .-.+.+ +..-+...++.......- ...-.....|+
T Consensus 201 rk~i~nif~~fi~e~e~~nGI-aeLLeilgSIinGf------a~PLKeehk~fl~~vLlPLhk~~~l--~~y~~qL~ycv 271 (449)
T 2npp_B 201 RKQINNIFYRFIYETEHHNGI-AELLEILGSIINGF------ALPLKEEHKIFLLKVLLPLHKVKSL--SVYHPQLAYCV 271 (449)
T ss_dssp HHHHHHHHHHHHHTCSCCSCH-HHHHHHHHHHHSSC------CSSCCHHHHHHHHHTTGGGGGSSCG--GGTHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCH-HHHHHHHHHHHhcc------CCCCcHHHHHHHHHHHHHHHccchh--HHhHHHHHHHH
Confidence 54444333 33322 2233 24456677777665 222222 222223333333331111 11123444555
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHH
Q 002877 532 NEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIM 611 (872)
Q Consensus 532 ~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 611 (872)
..++...+ .....++..++..|-.+. ..-....+.-+..++..++.. .+.....+++
T Consensus 272 ~qf~eKDp-----~L~~~vi~~LLk~WP~tn-------------s~KevlFL~eleeile~~~~~-----ef~~i~~~lF 328 (449)
T 2npp_B 272 VQFLEKDS-----TLTEPVVMALLKYWPKTH-------------SPKEVMFLNELEEILDVIEPS-----EFVKIMEPLF 328 (449)
T ss_dssp HHHHHHCG-----GGHHHHHHHHHHTCCSSC-------------HHHHHHHHHHHHHHHTTCCHH-----HHHHHHHHHH
T ss_pred HHHHhcCc-----HhHHHHHHHHHHhCCCCC-------------chHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHH
Confidence 65665544 222333444444443210 001123344555555555553 6777788999
Q ss_pred HHHHHHHccCChhHHHHHHHHHHH--HHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHH
Q 002877 612 VLFLRVFACRSSTVHEEAMLAIGA--LAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 612 ~~l~~~l~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 680 (872)
..+-.++.+.+..|-+.|+..+.+ +.....+.-...++-++|.+.+..+++.+..++..+..++..+..
T Consensus 329 ~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 329 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999987743 333222222233444555555555555566688888888776543
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.91 E-value=0.005 Score=58.21 Aligned_cols=207 Identities=13% Similarity=0.081 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCCcH--HHHHHHHHHHHHHHhhccCCCCCccccCcccH--HHHHHHHHHHhhc-ChHHHHHHHHHHHHHH
Q 002877 411 GFDFLLNAMRDENN--HVKDTTAWTLSRIFELLHCPATGFSVISPENL--QRILTVLLESIKD-APNVAEKVCGAIYYLA 485 (872)
Q Consensus 411 l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
.+|.+++.|..+++ .++..|++++..++..... ....+ ...++.|+..|.. ++.++..|+++|.+++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~--------~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSE--------ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH--------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 46788889987777 8998999999888754322 11111 2467889999987 9999999999999998
Q ss_pred HhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHH---
Q 002877 486 QGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTL--- 562 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~--- 562 (872)
.... .....=.-...+|.|+..+... .+..++..+..+|..+..... ....+...-+|++.+.+....
T Consensus 81 ~~~~-----~nk~~I~~~GaI~~Lv~lL~~~--~~~~~~e~a~~aL~nLS~~~~--~k~~i~~~~i~~Lv~ll~~p~sG~ 151 (233)
T 3tt9_A 81 FEDN-----DNKLEVAELNGVPRLLQVLKQT--RDLETKKQITGLLWNLSSNDK--LKNLMITEALLTLTENIIIPFSGW 151 (233)
T ss_dssp TTCH-----HHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSGG--GHHHHHHHHHHHHCCCCCHHHHCC
T ss_pred hCCH-----HHHHHHHHcCCHHHHHHHHccC--CCHHHHHHHHHHHHHHHcChh--hHHHHHhccHHHHHHHHhccccCC
Confidence 6421 0000011125677888888632 235568888888888875433 233444455666655332110
Q ss_pred hhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchh---hHHHHHHHHHHHHccC--ChhHHHHHHHHHHHHH
Q 002877 563 ELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQ---TADQIMVLFLRVFACR--SSTVHEEAMLAIGALA 637 (872)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~l~~~l~~~l~~~--~~~v~~~a~~~l~~l~ 637 (872)
.....+........+++.++..+|.++...- . ..+..+.. .++.++..+-....+. +...++.++.+|.++.
T Consensus 152 ~~~~~~~~~~~~~~~v~~na~~~L~nLss~~-~--~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 152 PEGDYPKANGLLDFDIFYNVTGCLRNMSSAG-A--DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp CGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC-H--HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cccccccccccchHHHHHHHHHHHHHHhcCC-H--HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 0000000001123467778888888774311 0 01112222 1344444444444322 5577888888887764
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.74 E-value=0.0059 Score=56.35 Aligned_cols=123 Identities=14% Similarity=0.193 Sum_probs=89.7
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHHHHHh-hccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMPFVEA-NIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE 422 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~-~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~ 422 (872)
.++|..|...|... . ..+.+++++.. ...+++|++|+.+..+++.++....++ ..++.+..-..|+
T Consensus 85 deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------~~l~~~~~W~~d~ 151 (240)
T 3l9t_A 85 YQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------KALPIIDEWLKSS 151 (240)
T ss_dssp HHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------TTHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHhcCC
Confidence 57998888877655 2 23678888887 666889999999999999887522222 2556777888999
Q ss_pred cHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 423 NNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
++.||..|...+--.+.. + ........+++.+-....| +.-||.+..++|..+.+..
T Consensus 152 n~~VRR~Ase~~rpW~~~-~--------~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 152 NLHTRRAATEGLRIWTNR-P--------YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp SHHHHHHHHHHTCSGGGS-T--------TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhhHHHhcc-c--------hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 999999998875433322 1 1233445667766666677 8899999999999988764
No 111
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.49 E-value=0.082 Score=47.61 Aligned_cols=126 Identities=14% Similarity=0.199 Sum_probs=94.3
Q ss_pred HHHHHHhhcC-CcchhchHHHHHhhccC--CCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCC---CcHHH
Q 002877 353 CLGLVARTVG-DEVVPLVMPFVEANIVK--SDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRD---ENNHV 426 (872)
Q Consensus 353 ~l~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d---~~~~v 426 (872)
++..+....| .+++|.+..++.+.+.. .++..-...+....++..+.. -.+.+|+.+++|.++.++-. ....+
T Consensus 28 aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~L 106 (196)
T 4atg_A 28 AIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDV 106 (196)
T ss_dssp HHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHH
T ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 5666666666 77888888887766543 366666667778888888775 67899999999999999721 11279
Q ss_pred HHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHH
Q 002877 427 KDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD---APNVAEKVCGAIYYLAQ 486 (872)
Q Consensus 427 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~v~~~a~~al~~l~~ 486 (872)
|+.|+..++.++...+. .....-+.+...+.+.+.| .......|...+..+-.
T Consensus 107 Rd~AA~lL~~I~~~~~~-------~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 107 RKMSADIVKYIYDTYSR-------SYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHHHHHTT-------TSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhCc-------cCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 99999999999998876 3445668888989988876 55666777777766643
No 112
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.40 E-value=0.051 Score=48.92 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=72.7
Q ss_pred hchhhHHH-HHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccc--hHhHHHHHHHHHHHH
Q 002877 602 FILQTADQ-IMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSE--EYQVCAITVGVVGDV 678 (872)
Q Consensus 602 ~~~~~~~~-l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~--~~~v~~~a~~~l~~l 678 (872)
.+.||+-. +.+.+...+. +...-...+....++..+-.-.+.||+..++|.+..++-... ...+|..|...++.+
T Consensus 40 ~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 45555432 2233333332 444445556666777776666889999999999998885432 126999999999999
Q ss_pred HHHhcCCccccHHHHHHHHHHHhcCCC
Q 002877 679 CRALDDKVLPFCDGIMSLLLNALSNSQ 705 (872)
Q Consensus 679 ~~~~~~~~~~~~~~i~~~l~~~l~~~~ 705 (872)
++.++......-+.++..+.+.+.++.
T Consensus 118 ~~~~~~~y~~L~~RI~~tl~k~l~dp~ 144 (196)
T 4atg_A 118 YDTYSRSYKTLAPRVLKTLKGVWMDPN 144 (196)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHTCTT
T ss_pred HHHhCccCchHHHHHHHHHHHHHcCCC
Confidence 999997776667899999999998773
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.23 E-value=0.054 Score=50.07 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCccc
Q 002877 260 MQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQ 339 (872)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 339 (872)
.+.++++.....+++.+++|..|...+... .. ...+++.+...+.. +
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~--------------------------~~~~L~~ir~~va~------D 115 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK--------------------------DKEILIFMRDEVSK------D 115 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT--------------------------SHHHHHHHHHTGGG------C
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cC--------------------------cHHHHHHHHHHhCC------C
Confidence 344555555666788889999998855544 21 02344554443332 1
Q ss_pred CCCCcchhhhHHHHHHHHHh-hcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh
Q 002877 340 DDSIWNISMAGGTCLGLVAR-TVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA 418 (872)
Q Consensus 340 d~~~~~~r~~a~~~l~~l~~-~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~ 418 (872)
+.|.||..+..+++.++. ..++. .++.+.....|++..+|.+|.....-.+... ..+.....++|.+-..
T Consensus 116 --~~WrVre~lA~a~~~~~~~~~pe~----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~---~~k~dp~~ll~iL~~L 186 (240)
T 3l9t_A 116 --NNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP---YFKENPNEAIRRIADL 186 (240)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHCTTT----THHHHHHHHHCSSHHHHHHHHHHTCSGGGST---TTTTCHHHHHHHHHTT
T ss_pred --CCccHHHHHHHHHHHHHHhcCHHH----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc---hhhcCHHHHHHHHHHh
Confidence 349999999999999997 44454 4566777778888888888876654333221 1223345678888888
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhccC
Q 002877 419 MRDENNHVKDTTAWTLSRIFELLHC 443 (872)
Q Consensus 419 l~d~~~~vr~~a~~~l~~l~~~~~~ 443 (872)
..|++..||.+..+.|..+++.-++
T Consensus 187 ~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 187 KEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCChHHHHHHHHHHHHHHHhhhCHH
Confidence 8999999999999999999876654
No 114
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.22 E-value=2.3 Score=48.19 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=51.2
Q ss_pred ccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHH
Q 002877 454 ENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLN 532 (872)
Q Consensus 454 ~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~ 532 (872)
.++..+++.++.++.+ +..+...+..++..++.-. |....-.++.+++.+...+...--.+.+-...+++++.
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~------P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD------PSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC------CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC------CCccceehHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 4555666666677777 8888899999999999764 53334466777777777776300123443456666666
Q ss_pred HHHhcC
Q 002877 533 EVVRCS 538 (872)
Q Consensus 533 ~l~~~~ 538 (872)
.++...
T Consensus 409 ~~~r~l 414 (799)
T 1vsy_4 409 RVIRFI 414 (799)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 666544
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.87 E-value=2 Score=44.32 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=47.3
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 225 VVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
.+..... .+...+.-|.+.+..+...+|+.-..-++.++.+ ..+++..+|.+|+.-+..+|+.
T Consensus 33 ~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDL----cEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 33 VILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDL----CEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp HHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHH----HTCSSHHHHHHHHHHGGGGCCT
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH----HhcccHHHHHHHHHhhHHHhhh
Confidence 3444444 4788999999999988888877765555555554 4888999999999988888874
No 116
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=95.67 E-value=1.1 Score=43.84 Aligned_cols=166 Identities=10% Similarity=0.197 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhh
Q 002877 523 LRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSF 602 (872)
Q Consensus 523 vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 602 (872)
+|...+..+.+.++..+ +.....+.++|++++..-.-....+ .+-++ ..++.++..++++++. .
T Consensus 45 vKkeiLkLiet~i~~~~--d~~~v~~~~ippLl~~VL~DY~~~v--p~aRe------peVL~l~~tii~kl~~------~ 108 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSN--DPQMVAENFVPPLLDAVLIDYQRNV--PAARE------PEVLSTMAIIVNKLGG------H 108 (321)
T ss_dssp HHHHHHHHHHHHHTTCS--CHHHHHHHTHHHHHHHHHHHHHTSC--GGGCC------THHHHHHHHHHHHHGG------G
T ss_pred HHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHhCC--ccccc------HHHHHHHHHHHHHHHH------H
Confidence 46777888888887765 4455667778888765433222111 11111 2457889999999998 8
Q ss_pred chhhHHHHHHHHHH----HHccC---ChhHHHHHHHHHHHHHHHhhhHHHh----hhHHHHHHHHhhhcccchHhHHHHH
Q 002877 603 ILQTADQIMVLFLR----VFACR---SSTVHEEAMLAIGALAYATGPEFAK----YMPEFYQYLQMGLQNSEEYQVCAIT 671 (872)
Q Consensus 603 ~~~~~~~l~~~l~~----~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~----~l~~i~~~l~~~l~~~~~~~v~~~a 671 (872)
+.++++.+++.+.+ ++++. -++.|..-+..+..+...+...+.. .+..+++.+..+.+.. .+++...+
T Consensus 109 i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~-~r~V~e~g 187 (321)
T 1w9c_A 109 ITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT-MRNVADTG 187 (321)
T ss_dssp GGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS-SHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC-CchHHHHH
Confidence 88888877777665 45543 5789999999999998877655443 4456777777777654 56799999
Q ss_pred HHHHHHHHHHhcC-------CccccHHHHHHHHHHHhcCCC
Q 002877 672 VGVVGDVCRALDD-------KVLPFCDGIMSLLLNALSNSQ 705 (872)
Q Consensus 672 ~~~l~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~ 705 (872)
+..+-.+..+... -+..|.-.++..++..+.++.
T Consensus 188 L~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 188 LQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 9988888777641 123455667777777777664
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.44 E-value=3.5 Score=39.21 Aligned_cols=168 Identities=11% Similarity=0.135 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhcc--
Q 002877 87 ISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEI-- 164 (872)
Q Consensus 87 ~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-- 164 (872)
++...++.+.+++.-.+++..+|+.++..+...++.. + ..-+..++.|...+.++ ++.+.+.++.+.+.+....
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~-~l~~~~l~~L~~Ll~d~--d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-V-ELLPHVINVVSMLLRDN--SAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888777788999999999999998765 3 36788999999999887 7887777777666543321
Q ss_pred --C--cc---cc--chhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhh----------hh-----------
Q 002877 165 --S--HQ---DL--VQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTN----------FQ----------- 214 (872)
Q Consensus 165 --~--~~---~l--~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~----------~~----------- 214 (872)
. +. .. .-..+..+-..+++.+.+ .+..+|..++|.+..++...... +.
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s--~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l 201 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDN--ENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLF 201 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGS--SCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSS
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHcc--CCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcC
Confidence 1 11 11 022334444556666665 68999999999999988532210 00
Q ss_pred -h---hhHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 002877 215 -N---EMERNYIMKVVCETAKSK--EVEIRQAAFECLVSIASTYYEVLEPYM 260 (872)
Q Consensus 215 -~---~~~~~~ll~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~l 260 (872)
. +.+-..++..+.....++ ......+++.+|..+++..|.+....+
T Consensus 202 ~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl 253 (257)
T 3gs3_A 202 RREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVV 253 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 0 001122555555555443 344566888888888888887755433
No 118
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=94.41 E-value=0.51 Score=47.70 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=103.8
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHH-HHhhc---ChHHHHHHHHHHHHHH
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLL-ESIKD---APNVAEKVCGAIYYLA 485 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~l~d---~~~v~~~a~~al~~l~ 485 (872)
..+-.++..++.++|+-|......+.++...... ...++.+.+..++ ..+.+ ...| ......++.+.
T Consensus 174 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~--------~R~~Irk~i~nif~~fiye~e~~~GI-aeLLeilgsII 244 (392)
T 2jak_A 174 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG--------LRAYIRKQINNIFYRFIYETEHHNGI-AELLEILGSII 244 (392)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHHTSSCCCSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence 5677788889999999999999988887665543 3445544444333 33332 2233 34566677777
Q ss_pred HhhccCCCCCCCchh-hHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhh
Q 002877 486 QGYEDAGPSSSLLSP-YLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLEL 564 (872)
Q Consensus 486 ~~~~~~~~~~~~l~~-~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 564 (872)
.++ .-.+.+ +..-+...++.......- ...-.....|+..++...+ .....++..++..|-.+.
T Consensus 245 ngf------a~PLKeehk~Fl~~vLlPLhk~~~l--~~y~~qL~ycv~qf~eKDp-----~L~~~vi~~LLk~WP~tn-- 309 (392)
T 2jak_A 245 NGF------ALPLKEEHKIFLLKVLLPLHKVKSL--SVYHPQLAYCVVQFLEKDS-----TLTEPVVMALLKYWPKTH-- 309 (392)
T ss_dssp HTC------CSSCCHHHHHHHHHTTGGGGTSGGG--GGTHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHSSCSSC--
T ss_pred hcc------CCCCcHHHHHHHHHHhHhhccCCcH--HHhHHHHHHHHHHHHhcCc-----hhHHHHHHHHHHhCCCCC--
Confidence 766 222322 222223333333321110 1112344455555555544 222233333444333210
Q ss_pred hhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 002877 565 QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACRSSTVHEEAMLAIG 634 (872)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~ 634 (872)
+. + +...+.-+..++..++.. .+.....+++..+-.++.+.+..|.+.|+..+.
T Consensus 310 ---s~--K------evlFL~eleeiLe~~~~~-----~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 310 ---SP--K------EVMFLNELEEILDVIEPS-----EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp ---CT--T------HHHHHHHHHHHHHTCCHH-----HHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred ---ch--H------HHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 00 0 123345556666666554 677788899999999999999999999988774
No 119
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.22 E-value=4.6 Score=39.63 Aligned_cols=181 Identities=12% Similarity=0.161 Sum_probs=111.7
Q ss_pred HHHHhhcCCChhHhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCcc
Q 002877 96 LLLRTLASPVPEARHTSAQVIAKIASIEIPQ--------KQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQ 167 (872)
Q Consensus 96 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~--------~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 167 (872)
.|+..|..-+-.-|+.++++++.+.++.... ...|+++..|+..-..+ +...--| .+|...++. +
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~--diAl~~G--~mLRecir~---e 154 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP--EIALNCG--IMLRECIRH---E 154 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST--TTHHHHH--HHHHHHHTS---H
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc--hhHhHHH--HHHHHHHHh---H
Confidence 3344444445556666666666666543210 14688888888888766 3221111 112111111 1
Q ss_pred ccchhh--HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH--------HHHhhhhhhhHHHHHHHHHHHhhcCCcHHH
Q 002877 168 DLVQDE--VNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD--------FALTNFQNEMERNYIMKVVCETAKSKEVEI 237 (872)
Q Consensus 168 ~l~~~~--~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~--------~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 237 (872)
.+ ..+ -...+-.+++.+.. ++=+|-..|+.++..++. ++..++ +.++...-+++++++--+
T Consensus 155 ~l-a~~iL~~~~f~~fF~yv~~--~~FdiasDAf~TfkelLt~Hk~lvaefL~~ny------d~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 155 PL-AKIILWSEQFYDFFRYVEM--STFDIASDAFATFKDLLTRHKLLSAEFLEQHY------DRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp HH-HHHHHHSGGGGHHHHHTTC--SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTH------HHHHHHHHHHTTCSSHHH
T ss_pred HH-HHHHhccHHHHHHHHHhcC--CCchHHHHHHHHHHHHHhccHHHHHHHHHHhH------HHHHHHHHHHhcCCcchh
Confidence 11 000 01122244556665 677888888888877653 222222 236666777889999999
Q ss_pred HHHHHHHHHHHHHh--hhhhhHHhHH--HHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 238 RQAAFECLVSIAST--YYEVLEPYMQ--TLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 238 ~~~~~~~l~~l~~~--~~~~~~~~l~--~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
|..++..|++++-. +...+..|+. .-+..++..+++....++..|+....-++.+
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 99999999999865 4556666665 4566778888999999999999988877764
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.52 E-value=5 Score=40.65 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccC-
Q 002877 87 ISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEIS- 165 (872)
Q Consensus 87 ~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~- 165 (872)
++...++...++++-.+++..||+.++..|+..+.... +.-+.+++.|...+.++ ++.+.+.++.+.+.+....-
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~--el~~~~l~~L~~LL~d~--d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI--ELLLKLIANLNMLLRDE--NVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778888888899999999999999998753 25688999999999887 78877777776665542210
Q ss_pred -----cc---cc--chhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhh-------------hhh-------
Q 002877 166 -----HQ---DL--VQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTN-------------FQN------- 215 (872)
Q Consensus 166 -----~~---~l--~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-------------~~~------- 215 (872)
+. .. .-..+..+-..+++.+.+ .+..||..++|.+..++...... +.-
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds--~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nH 211 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDS--DNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDH 211 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTC
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCC
Confidence 11 11 022344455556666655 67899999999999988543211 000
Q ss_pred --------hhHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 002877 216 --------EMERNYIMKVVCETAKS--KEVEIRQAAFECLVSIASTYYEVLEPYMQTLF 264 (872)
Q Consensus 216 --------~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (872)
+.+-..++..+...+.+ -++-....++.+|..++...|.+....++.+.
T Consensus 212 p~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~ 270 (386)
T 3o2t_A 212 PYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYE 270 (386)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 00112366666666653 23455667888999999888877665555443
No 121
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=93.29 E-value=7.9 Score=39.32 Aligned_cols=233 Identities=11% Similarity=0.076 Sum_probs=140.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHH
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQNL--PGFL-----LSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKED 77 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~--~~~~-----~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~ 77 (872)
+.++|....|+|+.-|......|.++...-. -.++ ..+...+-....-..+-. ...++...++
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIae-LLeilgsIin--------- 200 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIIN--------- 200 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHH-HHHHHHHHHH---------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHH-HHHHHHHHHc---------
Confidence 5678888899999999999999998776411 1111 111221111111111111 1112222221
Q ss_pred HHhhhhcCChHHHHHHHHHHHHhhcCCC-hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHH
Q 002877 78 LAKQWLAIDISYKSQVKDLLLRTLASPV-PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLET 156 (872)
Q Consensus 78 ~~~~w~~l~~~~~~~i~~~Ll~~l~~~~-~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~ 156 (872)
..-..+.++.+..+...|+.+-..+. ..--.+++.++..++..+ |. .-..++..++...-.. +......-+.-
T Consensus 201 --Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-p~-L~~~vi~~LLk~WP~t--ns~KevlFL~E 274 (403)
T 3fga_B 201 --GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEPVVMALLKYWPKT--HSPKEVMFLNE 274 (403)
T ss_dssp --HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-GG-GHHHHHHHHHHTCCSS--CHHHHHHHHHH
T ss_pred --ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC-ch-hHHHHHHHHHHhCCCC--CcHHHHHHHHH
Confidence 11123557777777777777766554 445578999999988777 42 4445666666655554 55445556677
Q ss_pred HHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH--HHHHHhhhhhhhHHHHHHHHHHHhhc-CC
Q 002877 157 LGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNA--LDFALTNFQNEMERNYIMKVVCETAK-SK 233 (872)
Q Consensus 157 l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~~ll~~l~~~~~-~~ 233 (872)
+..+++...++.+ ......++..+..++.+ ++-.|-..|+....+- +..+..+. ....+.+++.+.+... +=
T Consensus 275 le~iLe~~~~~~f-~~i~~~lf~~la~ci~S--~hfqVAErAL~~wnNe~i~~li~~n~--~~IlPii~p~L~~~~~~HW 349 (403)
T 3fga_B 275 LEEILDVIEPSEF-VKIMEPLFRQLAKCVSS--PHFQVAERALYYWNNEYIMSLISDNA--AKILPIMFPSLYRNSKTHW 349 (403)
T ss_dssp HHHHHTTCCHHHH-HHHHHHHHHHHHHHHTC--SCHHHHHHHHGGGGCHHHHHHHHTTH--HHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHhCCHHHH-HHHHHHHHHHHHHHHCC--CCHHHHHHHHHHhccHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcc
Confidence 7788887766666 77788888899999988 6888888888766431 22222211 1112234444444333 33
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhHH
Q 002877 234 EVEIRQAAFECLVSIASTYYEVLEP 258 (872)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (872)
+..++..++.++..+.+..+..+..
T Consensus 350 n~~v~~l~~~vlk~l~e~d~~lF~~ 374 (403)
T 3fga_B 350 NKTIHGLIYNALKLFMEMNQKLFDD 374 (403)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 7889999999999988877766644
No 122
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.27 E-value=5.8 Score=37.72 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=107.5
Q ss_pred CCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 002877 125 PQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYN 204 (872)
Q Consensus 125 p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~ 204 (872)
|. -++++++.+++...++ +..+|.-....+...|..- ......+++.+...+++ .++.|.+.++.+..+
T Consensus 48 p~-ll~~~l~~il~~~~~~--~~~vrk~~~~Fi~e~~~~k------~~l~~~~l~~L~~Ll~d--~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 48 AE-LAEEFLESVLSLAHDS--NMEVRKQVVAFVEQVCKVK------VELLPHVINVVSMLLRD--NSAQVIKRVIQACGS 116 (257)
T ss_dssp GG-GHHHHHHHHHGGGGCS--CHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 53 7899999999977776 8889999999998888653 45678888888888887 688999999999998
Q ss_pred HHHHHHh----hh-------hhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhh--------------------
Q 002877 205 ALDFALT----NF-------QNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYY-------------------- 253 (872)
Q Consensus 205 ~~~~~~~----~~-------~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-------------------- 253 (872)
+....-. +- ..|.....+-..+.+...+.+..+|..+++++..++-...
T Consensus 117 iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~ 196 (257)
T 3gs3_A 117 IYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPD 196 (257)
T ss_dssp HHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCS
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCC
Confidence 8764221 11 1122122355566777788899999999999999884321
Q ss_pred -------hhhHHhHHHHHHHHHHHhcCC--ChHHHHHHHHhHhHHhHhh
Q 002877 254 -------EVLEPYMQTLFELTSNAVKGD--EEAVALQAVEFWSSICDEE 293 (872)
Q Consensus 254 -------~~~~~~l~~l~~~~~~~~~~~--~~~~~~~al~~l~~l~~~~ 293 (872)
..+...-..++..++....+. ..-.-..++..|..+++..
T Consensus 197 ~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~R 245 (257)
T 3gs3_A 197 HCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMR 245 (257)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhC
Confidence 111112224556555554443 2334456677777777763
No 123
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=93.25 E-value=8.8 Score=39.72 Aligned_cols=229 Identities=12% Similarity=0.100 Sum_probs=140.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ChHHHH-----HHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHH
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQ--NLPGFL-----LSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKED 77 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~--~~~~~~-----~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~ 77 (872)
+.++|....|+|+.-|......|..++.. +.-.++ ..+...+-....-..+-. ...++...++..
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIae-LLeilgSIinGf------- 235 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIINGF------- 235 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHH-HHHHHHHHHSSC-------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH-HHHHHHHHHhcc-------
Confidence 56788888999999999999999887764 111121 111121211111112111 122333333221
Q ss_pred HHhhhhcCChHHHHHHHHHHHHhhcCCC-hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHH
Q 002877 78 LAKQWLAIDISYKSQVKDLLLRTLASPV-PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLET 156 (872)
Q Consensus 78 ~~~~w~~l~~~~~~~i~~~Ll~~l~~~~-~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~ 156 (872)
-..+.++.+..+...|+.+..... ..--.+++.++..++..+ |. .-..++..|+...-.. +......-+.-
T Consensus 236 ----a~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~-L~~~vi~~LLk~WP~t--ns~KevlFL~e 307 (449)
T 2npp_B 236 ----ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEPVVMALLKYWPKT--HSPKEVMFLNE 307 (449)
T ss_dssp ----CSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-GG-GHHHHHHHHHHTCCSS--CHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC-cH-hHHHHHHHHHHhCCCC--CchHHHHHHHH
Confidence 123557777777777777766544 445668888988888776 32 3345566666555444 44444456677
Q ss_pred HHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH--HHHHHhhhhhhhHHHHHHHHHHHhh----
Q 002877 157 LGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNA--LDFALTNFQNEMERNYIMKVVCETA---- 230 (872)
Q Consensus 157 l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~~ll~~l~~~~---- 230 (872)
+..+++...+..+ ......++..+..++++ ++-.|-..|+..+.+- +..+..+ ...+++.++..+
T Consensus 308 leeile~~~~~ef-~~i~~~lF~~la~ci~S--~hfqVAErAL~~w~N~~i~~li~~n------~~~IlPii~p~L~~~s 378 (449)
T 2npp_B 308 LEEILDVIEPSEF-VKIMEPLFRQLAKCVSS--PHFQVAERALYYWNNEYIMSLISDN------AAKILPIMFPSLYRNS 378 (449)
T ss_dssp HHHHHTTCCHHHH-HHHHHHHHHHHHHHHTC--SCHHHHHHHHGGGGCHHHHHHHHTT------HHHHHHHHHHHHTSCT
T ss_pred HHHHHHhCCHHHH-HHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHCCHHHHHHHHhc------hhhhHHhhHHHHHHHH
Confidence 7788877766666 67788899999999988 7888988888766431 2222221 233555555543
Q ss_pred c-CCcHHHHHHHHHHHHHHHHhhhhhhHH
Q 002877 231 K-SKEVEIRQAAFECLVSIASTYYEVLEP 258 (872)
Q Consensus 231 ~-~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (872)
. +=+..++..+..++..+.+..+..+..
T Consensus 379 ~~HWn~~V~~la~~vlk~l~e~d~~lf~~ 407 (449)
T 2npp_B 379 KTHWNKTIHGLIYNALKLFMEMNQKLFDD 407 (449)
T ss_dssp TCCSSTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 2 226778999999998888877766544
No 124
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.16 E-value=7 Score=38.34 Aligned_cols=188 Identities=13% Similarity=0.150 Sum_probs=115.7
Q ss_pred CCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCC--
Q 002877 50 EKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQK-- 127 (872)
Q Consensus 50 ~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~-- 127 (872)
..+.+.|.-+++++.+.++.....+.. ...|-. .+..+...|+.+-. ++.+--.++.++...++++.-..
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p--~v~Yl~----~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~la~~i 160 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTP--TVEYIC----TQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEPLAKII 160 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCH--HHHHHH----TCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHHHHHHH
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCc--hhHHHH----cCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHHHHHHH
Confidence 357888999999888877654332211 111111 12234445555544 34455556666666655431000
Q ss_pred CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhcc---CccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q 002877 128 QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEI---SHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYN 204 (872)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~---~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~ 204 (872)
-+.+.+-.+++.++.+ +-++-.-|+.++..+...- ..+.+ ..+.+.++...-+++.+ ++--.|..+++.|+.
T Consensus 161 L~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL-~~nyd~Ff~~y~~Ll~S--~NYVTkRQSlKLLge 235 (341)
T 1upk_A 161 LWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFL-EQHYDRFFSEYEKLLHS--ENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHTTC--SSHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHH-HHhHHHHHHHHHHHhcC--CcchhHHHHHHHHHH
Confidence 1112333555677777 7777777888887776652 13445 56677888888888877 688999999999999
Q ss_pred HHHHHHhhhh---hhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Q 002877 205 ALDFALTNFQ---NEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 205 ~~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (872)
++.- +.++. .......-+..+..++.++...++..|+.++.-++..
T Consensus 236 lLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 236 LLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 8631 11111 1101122567788889999999999999999988754
No 125
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.50 E-value=10 Score=38.47 Aligned_cols=157 Identities=9% Similarity=0.018 Sum_probs=108.3
Q ss_pred CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q 002877 127 KQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNAL 206 (872)
Q Consensus 127 ~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 206 (872)
.-.+++++.+++...++ +..+|..++..+...|..- .+....+++.+...+++ .++.|.+.++.|..++.
T Consensus 59 sLl~~fl~~il~f~~d~--~~~vRk~~a~FieEa~~~~------~el~~~~l~~L~~LL~d--~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADK--SIEVRKFVIGFIEEACKRD------IELLLKLIANLNMLLRD--ENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGGGGHHHHHGGGGCS--CHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHH
Confidence 37889999999988888 8899999999999888753 45678888888888887 67899999999998876
Q ss_pred HHH----Hhhh-------hhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhh----------------------
Q 002877 207 DFA----LTNF-------QNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYY---------------------- 253 (872)
Q Consensus 207 ~~~----~~~~-------~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------------- 253 (872)
... -.+- ..|.....+-..+.....+.+..+|..+++++..++-...
T Consensus 129 pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP 208 (386)
T 3o2t_A 129 KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIP 208 (386)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSC
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCC
Confidence 432 1111 1122222355566677778899999999999999884321
Q ss_pred --------hhhHHhHHHHHHHHHHHhcCC--ChHHHHHHHHhHhHHhHhh
Q 002877 254 --------EVLEPYMQTLFELTSNAVKGD--EEAVALQAVEFWSSICDEE 293 (872)
Q Consensus 254 --------~~~~~~l~~l~~~~~~~~~~~--~~~~~~~al~~l~~l~~~~ 293 (872)
..+...-..++..++..+..+ ..-....++..|..+++..
T Consensus 209 ~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~R 258 (386)
T 3o2t_A 209 RDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQR 258 (386)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhc
Confidence 011111224667777666652 3334455677777777763
No 126
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=91.51 E-value=11 Score=36.88 Aligned_cols=125 Identities=11% Similarity=0.134 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHHHcCCCccchhhchh
Q 002877 526 AAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQ 605 (872)
Q Consensus 526 ~a~~al~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 605 (872)
..+.++.+++...+ ....++++.++..+++.=-+.++ +|-..+++.|......+..+....-. .+..
T Consensus 93 eVL~l~~tii~kl~-~~i~~~vp~Il~~VFe~TL~MI~------~df~eyPehR~~Ff~LL~ai~~~cF~------al~~ 159 (321)
T 1w9c_A 93 EVLSTMAIIVNKLG-GHITAEIPQIFDAVFECTLNMIN------KDFEEYPEHRTNFFLLLQAVNSHCFP------AFLA 159 (321)
T ss_dssp HHHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHHHS------STTTCSHHHHHHHHHHHHHHHHHCTT------HHHH
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHh------cccccChHHHHHHHHHHHHHHHHhHH------HHHc
Confidence 56777788888777 66666666666666655444432 24456777888888888887766544 3222
Q ss_pred ----hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh-------HHHhhhHHHHHHHHhhhcccc
Q 002877 606 ----TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP-------EFAKYMPEFYQYLQMGLQNSE 663 (872)
Q Consensus 606 ----~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-------~~~~~l~~i~~~l~~~l~~~~ 663 (872)
....+++.++...+++..++.+.++..+-.+...... -+..|+-.++.-++..+.++.
T Consensus 160 lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 160 IPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp SCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3456788888889999999999999888777666531 122344455555666666543
No 127
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=90.81 E-value=26 Score=39.79 Aligned_cols=286 Identities=9% Similarity=0.114 Sum_probs=156.7
Q ss_pred hhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCC---CcHHHHHHHHHHHHHHHhhcc
Q 002877 366 VPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRD---ENNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 366 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~ 442 (872)
+..+.|.+...+.+.+......+..++..++.-. |....-.++.++..+...|+. .++.-..+++.++..++..+.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELD-PSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-CCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 3456777778888888777777888888887643 322233566777777777766 556666677888888887766
Q ss_pred CCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCC--CC-----------------------
Q 002877 443 CPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPS--SS----------------------- 496 (872)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~--~~----------------------- 496 (872)
. ......++..++..++.++.- ++.-...+...+..++....-.+.+ .+
T Consensus 416 ~-----~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (799)
T 1vsy_4 416 M-----DKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGE 490 (799)
T ss_dssp T-----STTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTC
T ss_pred c-----CcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccc
Confidence 5 123456777888888888875 7776677777777777654211110 01
Q ss_pred ---------------------CchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q 002877 497 ---------------------LLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIM 555 (872)
Q Consensus 497 ---------------------~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~l~~~l~ 555 (872)
.+..++...++.++..+.+.. + ..+-.....++..+...+. .+.++..+..+.
T Consensus 491 ~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~-E-e~l~~~l~~~~~~l~~~lS----~~if~~~l~k~~ 564 (799)
T 1vsy_4 491 SSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDL-E-DSLVTKINQTTMILQESMD----DKIFNYFASLLN 564 (799)
T ss_dssp CSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCC-C-THHHHHHHHHHHHHHHTBC----HHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-h-HHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHH
Confidence 122334444555555554311 1 1222334444444554444 122222222222
Q ss_pred HHHHHHHhhhhcCcchhhhHHHHHHHHHHH----HHHHHHHcCCCccchhhchhhHHHHHHHHHHHHccC------ChhH
Q 002877 556 GRLGQTLELQIVSSDDREKQGDLQASLCGV----LQVIIQKFSSTDATKSFILQTADQIMVLFLRVFACR------SSTV 625 (872)
Q Consensus 556 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~v 625 (872)
+... ..+.... .+ .+... +..+++.-+. .+..+++.+...+...+++. ..++
T Consensus 565 ~fv~----~n~~~~a-~~-------~v~~L~~~~~~a~~~~~P~------~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~ 626 (799)
T 1vsy_4 565 RNFW----SNDSFKE-KD-------PNYELVTIPLAALVRRNNG------LSKELVRTLLFHIKEQIKRGAGSVRSTSEI 626 (799)
T ss_dssp HHHH----SCSCCCS-SS-------CCTHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHHHHHHTTTTCSCCSSSC
T ss_pred HHHH----HhhhhhH-HH-------HHHHHHHHHHHHHHHhCHH------HHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 2222 2111110 00 11112 3444444222 45556666666555444333 1111
Q ss_pred --HH----HHHHHHHHHHHHhhhHHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHHHHH
Q 002877 626 --HE----EAMLAIGALAYATGPEFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRA 681 (872)
Q Consensus 626 --~~----~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 681 (872)
++ .-+.+++.++...|..+.+|-++++..+...+.......+-..++.++..+..+
T Consensus 627 ~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 627 QQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp CTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 22 335667778888888899999999988877665433333334455555555444
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.50 E-value=12 Score=44.51 Aligned_cols=121 Identities=13% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCcchHHHHHHHHHHhhcCCCcc---chhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccH
Q 002877 380 SDWRCREAATYAFGSVLEGPTID---KLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENL 456 (872)
Q Consensus 380 ~~~~~r~aal~~l~~i~~~~~~~---~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 456 (872)
.++..|+++++++|.++.....+ .-...++.+...+.+.+...+..-+..++++||+++. +.
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-------------p~-- 471 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-------------PN-- 471 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-------------GG--
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-------------hh--
Confidence 46778899999999987531101 1112355566666677777778888999999999872 11
Q ss_pred HHHHHHHHHHhh-------c-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHH
Q 002877 457 QRILTVLLESIK-------D-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAY 528 (872)
Q Consensus 457 ~~~l~~l~~~l~-------d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~ 528 (872)
.++.+.+.+. + ..+||.+|+++|..+.... -..+-+.+++.+.+.. ++..+|.+|+
T Consensus 472 --~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-------------p~~v~~il~~i~~n~~-e~~EvRiaA~ 535 (1056)
T 1lsh_A 472 --SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-------------PRKVQEIVLPIFLNVA-IKSELRIRSC 535 (1056)
T ss_dssp --GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-------------HHHHHHHHHHHHHCTT-SCHHHHHHHH
T ss_pred --HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-------------hHHHHHHHHHHhcCCC-CChHHHHHHH
Confidence 2333434332 2 4578889999988776432 1223344455553322 4567787777
Q ss_pred HHH
Q 002877 529 ETL 531 (872)
Q Consensus 529 ~al 531 (872)
..|
T Consensus 536 ~~L 538 (1056)
T 1lsh_A 536 IVF 538 (1056)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.43 E-value=80 Score=37.43 Aligned_cols=158 Identities=15% Similarity=0.062 Sum_probs=91.9
Q ss_pred CChhHhhHHHHHHHHHHHhhcCC------CCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHH
Q 002877 104 PVPEARHTSAQVIAKIASIEIPQ------KQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAV 177 (872)
Q Consensus 104 ~~~~vr~~~~~~l~~i~~~~~p~------~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l 177 (872)
.++.+|..+...++.+++..... ..-+.+...+.+.+... +...+..++.+|+.+--. . .
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~--~~~~~~~~LkaLGN~g~p--------~----~ 472 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA--KEEEIVLALKALGNAGQP--------N----S 472 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCG--------G----G
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHhhccCCh--------h----H
Confidence 46789999999999998765421 12355666666777666 677788888888765431 1 2
Q ss_pred HHHHHhccc-----CCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHH
Q 002877 178 LTAVVQGMN-----LAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETA--KSKEVEIRQAAFECLVSIAS 250 (872)
Q Consensus 178 ~~~l~~~l~-----~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~~~~l~~l~~ 250 (872)
++.+.+.+. ..+....||.+|+.+|..+... .. ..+-+++.+.. ...+.++|..|+..+..
T Consensus 473 l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-----~p----~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~--- 540 (1056)
T 1lsh_A 473 IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-----DP----RKVQEIVLPIFLNVAIKSELRIRSCIVFFE--- 540 (1056)
T ss_dssp HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-----CH----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH---
T ss_pred HHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-----ch----HHHHHHHHHHhcCCCCChHHHHHHHHHHHH---
Confidence 233333332 1123568999999998875421 11 11333444444 34689999999988743
Q ss_pred hhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 251 TYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 251 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
..|.. ..+..+...+ ..+.+.+++......+..+++.
T Consensus 541 t~P~~--~~l~~ia~~l---~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 541 SKPSV--ALVSMVAVRL---RREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp TCCCH--HHHHHHHHHH---TTCSCHHHHHHHHHHHHHHTTC
T ss_pred HCcCH--HHHHHHHHHH---hhCchHHHHHHHHHHHHHHHhc
Confidence 22321 1222232222 2335666666666555555543
No 130
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=81.42 E-value=31 Score=33.96 Aligned_cols=149 Identities=10% Similarity=0.117 Sum_probs=94.8
Q ss_pred hhccCCCcchHHHHHHHHHHhhcCCCccchhHhHH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCc
Q 002877 375 ANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVH-AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISP 453 (872)
Q Consensus 375 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 453 (872)
+.+.+.+-+.+.-+++-|..+...- .+....++. .-+..|+....+.+......++.+++++..+... ..
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G--------m~ 195 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG--------ML 195 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH--------HH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc--------cc
Confidence 3444555666777888888744321 244555555 6677788888888899999999999998765221 00
Q ss_pred cc--HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHH------------HHHHHHhhccCCC
Q 002877 454 EN--LQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSI------------IAELLRAADRTDV 518 (872)
Q Consensus 454 ~~--~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~i------------l~~l~~~l~~~~~ 518 (872)
.. .+.++..+...+.. ...|...|...|..+++... ...+.+..- ++.++..++..+.
T Consensus 196 gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-------~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~ 268 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-------NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNG 268 (339)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-------GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS
T ss_pred chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-------ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCC
Confidence 01 35566777777776 78888899998888887641 111221111 3355666654344
Q ss_pred cchhHHHHHHHHHHHHHhcCC
Q 002877 519 GGSKLRSAAYETLNEVVRCSN 539 (872)
Q Consensus 519 ~~~~vr~~a~~al~~l~~~~~ 539 (872)
.+..++..+...|+.+....+
T Consensus 269 ~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 269 ADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHhcCC
Confidence 455667777777777777666
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.27 E-value=21 Score=31.16 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
...+..+...+.+.++.+.-.|+.++..+++++|..|...+ ..+++.+...+....++.|+..++.++......++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45677777888888899999999999999999998776322 234554544444434568999999999999888764
No 132
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=79.08 E-value=65 Score=33.54 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=40.2
Q ss_pred CcchHHHHHHHHHHhhcCCCccchhHhHH--hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 002877 381 DWRCREAATYAFGSVLEGPTIDKLAPLVH--AGFDFLLNAMRDENNHVKDTTAWTLSRIFEL 440 (872)
Q Consensus 381 ~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 440 (872)
++..-..|+.=+|.++... |.... .+. ..-..+++.+.++++.||+.|+.|+.++..+
T Consensus 418 d~~~laVAc~Digefvr~~-P~gr~-i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELL-PESID-VLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTHHH-HHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHC-cchhH-HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4555566677777777654 23211 222 3456788999999999999999999987643
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.29 E-value=26 Score=29.90 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcc-----cchHhHHHHHHHHHHHHHH
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQN-----SEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~ 680 (872)
...+..+...+.+.++.+.-.|+.++..+++++|..|..-+ ..++..|.+.+.. ..+..|+...+.++...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 46677788888888999999999999999999998774322 2455555555542 2346799999999999988
Q ss_pred HhcC
Q 002877 681 ALDD 684 (872)
Q Consensus 681 ~~~~ 684 (872)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 8764
No 134
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.38 E-value=28 Score=30.62 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcc-----cchHhHHHHHHHHHHHHHH
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQN-----SEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~ 680 (872)
...+..+...+.+.++.+.-.|+.++..+++++|..|...+ ..++..|...+.. ..+..|+..++.++...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677788888888999999999999999999998776422 2455555555542 2346799999999999998
Q ss_pred HhcC
Q 002877 681 ALDD 684 (872)
Q Consensus 681 ~~~~ 684 (872)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8764
No 135
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=76.74 E-value=60 Score=31.92 Aligned_cols=151 Identities=9% Similarity=0.077 Sum_probs=84.7
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhh-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 002877 135 SLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDE-VNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNF 213 (872)
Q Consensus 135 ~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~-~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 213 (872)
.+++.+.++ +...+..++.-|.+++..- .++. .++ -..=+..++..... .+.+....++.+|..++.+... +
T Consensus 122 ~iiekL~~~--~~~~lr~aLfsLk~~~q~D-~~Fa-~EFI~~~GL~~Li~vi~~--~~gN~q~Y~L~AL~~LM~~v~G-m 194 (339)
T 3dad_A 122 AILEKLYSS--SGPELRRSLFSLKQIFQED-KDLV-PEFVHSEGLSCLIRVGAA--ADHNYQSYILRALGQLMLFVDG-M 194 (339)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTC-TTHH-HHHHHTTHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSHHH-H
T ss_pred HHHHHHhcC--CcHHHHHHHHHHHHHhhcc-hHHH-HHHHHhccHHHHHHHHHh--cChHHHHHHHHHHHHHHhcccc-c
Confidence 334444444 5566667777777755421 1221 111 11223445555555 4678888999999988765322 1
Q ss_pred hhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHH-----------HHHHHHHhc---CCChHHH
Q 002877 214 QNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTL-----------FELTSNAVK---GDEEAVA 279 (872)
Q Consensus 214 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l-----------~~~~~~~~~---~~~~~~~ 279 (872)
+.-...+.+++.+..++.+.+..+.+.++++|..++...+....-....+ +..++..++ ..+.++.
T Consensus 195 ~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred cchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 11001234777777777788899999999999999876533222111111 223333333 3566677
Q ss_pred HHHHHhHhHHhHh
Q 002877 280 LQAVEFWSSICDE 292 (872)
Q Consensus 280 ~~al~~l~~l~~~ 292 (872)
..|+..+..+...
T Consensus 275 ~~amtLIN~lL~~ 287 (339)
T 3dad_A 275 VYTVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7776666555443
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=76.08 E-value=17 Score=30.71 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=50.8
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhh
Q 002877 176 AVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYY 253 (872)
Q Consensus 176 ~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (872)
..+..+.+.+.+ .++.+...|+..|-.++..++..|..+.....+++-+...+...++.++..+++++......+.
T Consensus 42 ~a~rai~Krl~~--~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 42 DCLRSIMRRVNH--KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 344555566666 5778899999999988877666555332222244444444444678999999999888876653
No 137
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=75.11 E-value=34 Score=34.61 Aligned_cols=180 Identities=12% Similarity=0.069 Sum_probs=105.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--hHHHH-----HHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHH
Q 002877 5 ITQFLLAAQSADANIRNEAEANLRQLQQQN--LPGFL-----LSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKED 77 (872)
Q Consensus 5 ~~~~l~~~~s~~~~~r~~A~~~L~~~~~~~--~~~~~-----~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~ 77 (872)
+.++|....|+|+.-|......|.+++..- .-.++ ..+...+-.......+-. ...++...++..
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIae-LLeilgsIIngf------- 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIINGF------- 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHH-HHHHHHHHHHTC-------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcc-------
Confidence 567888889999999999999998876631 11111 112222222111112111 122222222211
Q ss_pred HHhhhhcCChHHHHHHHHHHHHhhcCCC-hhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHH
Q 002877 78 LAKQWLAIDISYKSQVKDLLLRTLASPV-PEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLET 156 (872)
Q Consensus 78 ~~~~w~~l~~~~~~~i~~~Ll~~l~~~~-~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~ 156 (872)
-..+.++.+..+...|+.+..... ..--.+++.++..+...+ |. .-..++..++...-.. +......-+.-
T Consensus 248 ----a~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~-L~~~vi~~LLk~WP~t--ns~KevlFL~e 319 (392)
T 2jak_A 248 ----ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEPVVMALLKYWPKT--HSPKEVMFLNE 319 (392)
T ss_dssp ----CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHC-GG-GHHHHHHHHHHSSCSS--CCTTHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcC-ch-hHHHHHHHHHHhCCCC--CchHHHHHHHH
Confidence 123556777777777777666543 444567888888888776 31 3344555555444333 22223345566
Q ss_pred HHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Q 002877 157 LGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALY 203 (872)
Q Consensus 157 l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~ 203 (872)
+..+++...++.+ ......++..+..++.+ ++-.|-..|+..+.
T Consensus 320 leeiLe~~~~~~f-~~i~~~lF~~la~ci~S--~hfqVAErAL~~wn 363 (392)
T 2jak_A 320 LEEILDVIEPSEF-VKIMEPLFRQLAKCVSS--PHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHTCCHHHH-HHHHHHHHHHHHHHHTC--SSHHHHHHHHGGGG
T ss_pred HHHHHHhCCHHHH-HHHHHHHHHHHHHHHcC--CcHHHHHHHHHHhC
Confidence 6677777655566 67788888888899988 67888888776654
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=74.22 E-value=40 Score=28.72 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcc-----cchHhHHHHHHHHHHHHHH
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQN-----SEEYQVCAITVGVVGDVCR 680 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~ 680 (872)
...+..+..-+.+.++.+.-.|+.++..+++++|..|...+ ..++..|...+.. ..+..|+..++.++...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677778888888999999999999999999998875443 3666667666653 1356799999999999988
Q ss_pred HhcC
Q 002877 681 ALDD 684 (872)
Q Consensus 681 ~~~~ 684 (872)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8764
No 139
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=74.14 E-value=0.99 Score=42.81 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=113.1
Q ss_pred HhhcCCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHH
Q 002877 99 RTLASPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVL 178 (872)
Q Consensus 99 ~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~ 178 (872)
+.+.++++.||..++..+ | ...+...++++ ++.+|..+...+ .++
T Consensus 57 ~ll~d~~~~VR~~AA~~l--------~-------~~~l~~L~~D~--~~~VR~~aA~~L-------~~~----------- 101 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS--------P-------VEALTPLIRDS--DEVVRRAVAYRL-------PRE----------- 101 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS--------C-------GGGGGGGTTCS--SHHHHHHHHTTS-------CSG-----------
T ss_pred HHhcCCCHHHHHHHHHhC--------C-------HHHHHHHccCc--CHHHHHHHHHHC-------CHH-----------
Confidence 345778888988888743 2 11355666777 788887777532 111
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHH
Q 002877 179 TAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEP 258 (872)
Q Consensus 179 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (872)
.+...++| ++..||..+...+ .. ..+..+++++++.+|..+...+ .+.
T Consensus 102 -~L~~ll~D--~d~~VR~~aA~~l-----------~~--------~~L~~L~~D~d~~VR~~aA~~l------~~~---- 149 (244)
T 1lrv_A 102 -QLSALMFD--EDREVRITVADRL-----------PL--------EQLEQMAADRDYLVRAYVVQRI------PPG---- 149 (244)
T ss_dssp -GGGGTTTC--SCHHHHHHHHHHS-----------CT--------GGGGGGTTCSSHHHHHHHHHHS------CGG----
T ss_pred -HHHHHHcC--CCHHHHHHHHHhC-----------CH--------HHHHHHHcCCCHHHHHHHHHhc------CHH----
Confidence 23455666 6889998877742 11 1133456788899998887631 111
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhhhhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcc
Q 002877 259 YMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQEFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQD 338 (872)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~ 338 (872)
.+....+|+++.||..+..- +.. .++. .+. .|
T Consensus 150 -------~l~~l~~D~d~~VR~~aa~~---l~~-----------------------------~ll~----~ll---~D-- 181 (244)
T 1lrv_A 150 -------RLFRFMRDEDRQVRKLVAKR---LPE-----------------------------ESLG----LMT---QD-- 181 (244)
T ss_dssp -------GGGGTTTCSCHHHHHHHHHH---SCG-----------------------------GGGG----GST---TC--
T ss_pred -------HHHHHHcCCCHHHHHHHHHc---CCH-----------------------------HHHH----HHH---cC--
Confidence 12234567888888877652 100 0111 111 11
Q ss_pred cCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHh
Q 002877 339 QDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNA 418 (872)
Q Consensus 339 ~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~ 418 (872)
..|.||.++...+ + .+.+...+.|++|.+|+++...++ .+.+..
T Consensus 182 ---~d~~VR~aaa~~l-------~-------~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~- 225 (244)
T 1lrv_A 182 ---PEPEVRRIVASRL-------R-------GDDLLELLHDPDWTVRLAAVEHAS------------------LEALRE- 225 (244)
T ss_dssp ---SSHHHHHHHHHHC-------C-------GGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHH-
T ss_pred ---CCHHHHHHHHHhC-------C-------HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHH-
Confidence 1299998877642 2 134666688999999999877643 133433
Q ss_pred cCCCcHHHHHHHHHHHH
Q 002877 419 MRDENNHVKDTTAWTLS 435 (872)
Q Consensus 419 l~d~~~~vr~~a~~~l~ 435 (872)
|+|+++.||.++...||
T Consensus 226 L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 226 LDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp CCCCCHHHHHHHHCCC-
T ss_pred ccCCCHHHHHHHHHHhC
Confidence 49999999999876654
No 140
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=74.11 E-value=11 Score=31.70 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=60.0
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhc----
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAM---- 419 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l---- 419 (872)
|........-+..+....+......+++++...+++.+|.++.-++.+|..++.... ..+...+..-...|-.+.
T Consensus 25 ~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g 103 (140)
T 1vdy_A 25 KVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKG 103 (140)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCC
T ss_pred CCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCC
Confidence 655543333333333333335568899999999999999999999999999887654 444444443333333222
Q ss_pred -------CCCcHHHHHHHHHHHHHHHh
Q 002877 420 -------RDENNHVKDTTAWTLSRIFE 439 (872)
Q Consensus 420 -------~d~~~~vr~~a~~~l~~l~~ 439 (872)
+|+...||.+|-.++..+..
T Consensus 104 ~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 104 HPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp CCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred CCCcccccchhHHHHHHHHHHHHHHhC
Confidence 12336799998888776653
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=73.64 E-value=40 Score=28.41 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
...+..+...+.+.++.+.-.|+.++..+++++|..|..-+ ..++..+...+.. .++.|+...+.++...+..++.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCC
Confidence 46777788888888899999999999999999998775322 2444444444433 3567999999999988888764
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.99 E-value=22 Score=30.98 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHH
Q 002877 792 QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGW 861 (872)
Q Consensus 792 ~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~ 861 (872)
...+..|.+-+.. .++.+...|+.++..++++||..+-...-...|+..|++......++.||..+..
T Consensus 51 keA~ral~krl~~--~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~ 118 (163)
T 1x5b_A 51 KDCLKAIMKRVNH--KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKS 118 (163)
T ss_dssp HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 4455566655554 4678888899999999999999765555567788888776444477888877653
No 143
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.65 E-value=32 Score=31.97 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
...+..|..-+.+.++.+.-.|+.++..+++++|..|..-+ ..++..|...+....+..|+..++.++...+..++.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 46777788888888999999999999999999998665322 244444444444444567999999999999988764
No 144
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=68.76 E-value=1.9e+02 Score=34.76 Aligned_cols=188 Identities=10% Similarity=0.015 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHhhcccCCcccchHHHHhhhh---cCChHHHHHHHHHHHHhhcCCChhHhhHHHHHHHHHHHhhcCCCC
Q 002877 52 PTESRRLAGIMLKNSLDAKDATTKEDLAKQWL---AIDISYKSQVKDLLLRTLASPVPEARHTSAQVIAKIASIEIPQKQ 128 (872)
Q Consensus 52 ~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~---~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~ 128 (872)
+...|..|-.++|+++...--+. .-....+. .+-.+....+....-..+.+.++.|+.-++.....+.... ....
T Consensus 358 n~~~rk~aE~ilrkkI~~G~it~-~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~ 435 (1323)
T 3s4w_B 358 STQTKKGVEKLLRNKIQSDCIQE-QLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYC 435 (1323)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSCH-HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHH
T ss_pred CchhHHHHHHHHHHHHHcCCchH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cchh
Confidence 45678889999999886422111 10000000 0001111112211112455678899999999988888764 1112
Q ss_pred chHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Q 002877 129 WPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDF 208 (872)
Q Consensus 129 ~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 208 (872)
-.+++..|+..+.++ +......|+.+|..++... ++.+ .+ ...++..++..+.+- ...++|.. ...|+.+...
T Consensus 436 qqeVl~~Lv~hi~sg--~~~eVd~ALdvL~~L~~~~-~~~l-~~-~a~~l~giLD~l~~l-~~~QiRkl-f~iL~~laf~ 508 (1323)
T 3s4w_B 436 QQEVVGALVTHVCSG--TEAEVDTALDVLLELIVLN-ASAM-RL-NAAFVKGILDYLENM-SPQQIRKI-FCILSTLAFS 508 (1323)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHC-HHHH-HH-THHHHHGGGGGGGGC-CHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCC--CcHHHHHHHHHHHHHHhcC-HHHH-hH-HHHHHHHHHHhhcCC-CHHHHHHH-HHHHHHHHcC
Confidence 378899999988887 7777888999999998765 4433 22 333455556666552 23456654 6777665421
Q ss_pred HHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 002877 209 ALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVSIA 249 (872)
Q Consensus 209 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (872)
-+.. ......+.+.-++.+.+.+.+.++++..+-.-..++
T Consensus 509 ~~~~-~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v 548 (1323)
T 3s4w_B 509 QQPG-TSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMA 548 (1323)
T ss_dssp HCSS-CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCCC-cchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHH
Confidence 1111 110112335555666777777777664444333333
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.30 E-value=45 Score=30.82 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 608 DQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 608 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
...+..+..-+.+.++.+...|+.++..++.++|..|...+ ..++..+...+.+..+..|+..++..+...+..++.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 46677777888888999999999999999999998764322 134444444444334567999999999998888763
No 146
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=68.21 E-value=1.6 Score=41.34 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=109.8
Q ss_pred HhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002877 138 NNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEM 217 (872)
Q Consensus 138 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 217 (872)
+.++++ ++.+|..+...+ .+. .+...++| +++.||..+.+.|. .
T Consensus 57 ~ll~d~--~~~VR~~AA~~l-------~~~------------~l~~L~~D--~~~~VR~~aA~~L~-----------~-- 100 (244)
T 1lrv_A 57 QYLADP--FWERRAIAVRYS-------PVE------------ALTPLIRD--SDEVVRRAVAYRLP-----------R-- 100 (244)
T ss_dssp GGTTCS--SHHHHHHHHTTS-------CGG------------GGGGGTTC--SSHHHHHHHHTTSC-----------S--
T ss_pred HHhcCC--CHHHHHHHHHhC-------CHH------------HHHHHccC--cCHHHHHHHHHHCC-----------H--
Confidence 344666 778887776643 111 13445566 68888888876531 1
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHhhhhhh
Q 002877 218 ERNYIMKVVCETAKSKEVEIRQAAFECLVSIASTYYEVLEPYMQTLFELTSNAVKGDEEAVALQAVEFWSSICDEEIELQ 297 (872)
Q Consensus 218 ~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~~~~~~ 297 (872)
..+..++.++++.+|..+...+ +. +.+....++++.++|..+..- +..
T Consensus 101 ------~~L~~ll~D~d~~VR~~aA~~l-------~~----------~~L~~L~~D~d~~VR~~aA~~---l~~------ 148 (244)
T 1lrv_A 101 ------EQLSALMFDEDREVRITVADRL-------PL----------EQLEQMAADRDYLVRAYVVQR---IPP------ 148 (244)
T ss_dssp ------GGGGGTTTCSCHHHHHHHHHHS-------CT----------GGGGGGTTCSSHHHHHHHHHH---SCG------
T ss_pred ------HHHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHh---cCH------
Confidence 1234556788888888877742 11 112233577888888777641 100
Q ss_pred hhcCCCCCCCCCCchHHHHHhHHhhHHHHHHHHhcccCCcccCCCCcchhhhHHHHHHHHHhhcCCcchhchHHHHHhhc
Q 002877 298 EFENPETGDSDSPNYHFIEKARSSLVPMLLETLLKQEEDQDQDDSIWNISMAGGTCLGLVARTVGDEVVPLVMPFVEANI 377 (872)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~d~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l 377 (872)
.+ +..+.. | + .|.||..+... .+. +.+...+
T Consensus 149 -----------------------~~----l~~l~~---D---~--d~~VR~~aa~~-------l~~-------~ll~~ll 179 (244)
T 1lrv_A 149 -----------------------GR----LFRFMR---D---E--DRQVRKLVAKR-------LPE-------ESLGLMT 179 (244)
T ss_dssp -----------------------GG----GGGTTT---C---S--CHHHHHHHHHH-------SCG-------GGGGGST
T ss_pred -----------------------HH----HHHHHc---C---C--CHHHHHHHHHc-------CCH-------HHHHHHH
Confidence 00 001111 1 1 28899877664 221 3344677
Q ss_pred cCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHH
Q 002877 378 VKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQ 457 (872)
Q Consensus 378 ~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 457 (872)
.|++|.+|.+++..+ .. +.+...+.|+++.||.++...++
T Consensus 180 ~D~d~~VR~aaa~~l-------~~-----------~~L~~Ll~D~d~~VR~~aa~~l~---------------------- 219 (244)
T 1lrv_A 180 QDPEPEVRRIVASRL-------RG-----------DDLLELLHDPDWTVRLAAVEHAS---------------------- 219 (244)
T ss_dssp TCSSHHHHHHHHHHC-------CG-----------GGGGGGGGCSSHHHHHHHHHHSC----------------------
T ss_pred cCCCHHHHHHHHHhC-------CH-----------HHHHHHHcCCCHHHHHHHHHcCC----------------------
Confidence 899999999887642 11 34556689999999999988743
Q ss_pred HHHHHHHHHhhc-ChHHHHHHHHHH
Q 002877 458 RILTVLLESIKD-APNVAEKVCGAI 481 (872)
Q Consensus 458 ~~l~~l~~~l~d-~~~v~~~a~~al 481 (872)
.+.+.. |.| ++.||..+...+
T Consensus 220 --~~~L~~-L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 --LEALRE-LDEPDPEVRLAIAGRL 241 (244)
T ss_dssp --HHHHHH-CCCCCHHHHHHHHCCC
T ss_pred --HHHHHH-ccCCCHHHHHHHHHHh
Confidence 122333 477 999999887654
No 147
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=67.30 E-value=51 Score=27.89 Aligned_cols=97 Identities=9% Similarity=0.011 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHH-HhhhcccchHhHHHHHHHHHHHHHHHhcC
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGPEFAKYMPEFYQYL-QMGLQNSEEYQVCAITVGVVGDVCRALDD 684 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l-~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 684 (872)
+.+.+++.+...+....+.-+-.++.++.++++++|..+.+++...++.+ ....... +...+.....++...-...+.
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~-d~~~r~k~~rL~~~W~~~~~~ 118 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLV-DNTTRTKLINMFKLWLNPNDT 118 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTS-CHHHHHHHHHHHHHHTSGGGC
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhCcccC
Confidence 67788888888888888888999999999999999876665555433333 3333322 344666666665555433221
Q ss_pred CccccHHHHHHHHHHHhcC
Q 002877 685 KVLPFCDGIMSLLLNALSN 703 (872)
Q Consensus 685 ~~~~~~~~i~~~l~~~l~~ 703 (872)
...-|-+.++..+-..|..
T Consensus 119 ~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 119 GLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp SSCSSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 1223444566666555543
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=65.40 E-value=61 Score=27.60 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=53.6
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHHHHHh
Q 002877 178 LTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKS------KEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 178 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~~~~~~~~l~~l~~~ 251 (872)
+..+.+.+++ .++.+...|+..|-.++..++..|..+.....+++-+...+.. .+..++..+++++......
T Consensus 40 ~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 40 PWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444555665 6889999999999999887766665443333466667666652 3789999999999998876
Q ss_pred hhh
Q 002877 252 YYE 254 (872)
Q Consensus 252 ~~~ 254 (872)
++.
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 643
No 149
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=63.03 E-value=71 Score=27.20 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=56.1
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------CCcHHHHHHHHHHHHHH
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK------SKEVEIRQAAFECLVSI 248 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~~~~~~~~~l~~l 248 (872)
...+..+.+.+++ .++.+...|+..|-.++..++..|..+.....+++-+...+. ..++.++..+++++...
T Consensus 47 k~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 47 PLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 3445566667776 688999999999999988776666544332335666666654 24789999999999999
Q ss_pred HHhhhh
Q 002877 249 ASTYYE 254 (872)
Q Consensus 249 ~~~~~~ 254 (872)
...++.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 877654
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.90 E-value=82 Score=27.57 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=55.7
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------CCcHHHHHHHHHHHHHH
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK------SKEVEIRQAAFECLVSI 248 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~~~~~~~~~l~~l 248 (872)
...+..+.+.+++ .++.++..|+..|-.++..++..|..+.....+++-+..++. ..+..++..+++++...
T Consensus 49 k~A~ral~krl~~--~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 49 QIAVRLLAHKIQS--PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 3445556667776 688999999999999998777666544333335566666654 23689999999999998
Q ss_pred HHhhhh
Q 002877 249 ASTYYE 254 (872)
Q Consensus 249 ~~~~~~ 254 (872)
...++.
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 876644
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.03 E-value=91 Score=28.68 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=47.3
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHhh
Q 002877 177 VLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAK-SKEVEIRQAAFECLVSIASTY 252 (872)
Q Consensus 177 l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~ 252 (872)
.+..+.+.+++ .++.++..|+..|-.++...+..|..+.....+++.+..++. ..+.+++..+++.+......+
T Consensus 43 a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 43 AFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 34445555666 678999999999999887766555433221224444444433 346788888888888877654
No 152
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=60.77 E-value=1.6e+02 Score=30.61 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=41.5
Q ss_pred CHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 002877 808 DENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWTQGMIN 867 (872)
Q Consensus 808 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~~~~~~ 867 (872)
++.+-..|+.=||+++++++.... ....--.+..+=+.+.++|++||--|--|++.+.
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~--i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESID--VLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHH--HHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhH--HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 566667778889999999987532 2222224555555689999999998888887765
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=58.47 E-value=72 Score=29.93 Aligned_cols=137 Identities=13% Similarity=0.071 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhccC--ccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-----HHH
Q 002877 151 QATLETLGYVCEEIS--HQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALDFALTNFQNEMERN-----YIM 223 (872)
Q Consensus 151 ~~al~~l~~l~~~~~--~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~-----~ll 223 (872)
-.++..|+.++..-. ...+ ..+.+..+-.+++......+-..+|.+++..++.++.. + ...... .++
T Consensus 74 cnaLaLlQcvAshpetr~~Fl-~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~---d--d~eVi~fLL~tEii 147 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFL-AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKT---D--EQEVINFLLTTEII 147 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHH-HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGG---C--CHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHcCcchhhHHH-HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhcc---C--cHHHHHHHHhhhHH
Confidence 455666666665421 1122 33333333333444433224568999999999987642 1 111112 266
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHhh---------hhhhHHhHHHHHHHHHH-HhcCCChHHHHHHHHhHhHHhHhh
Q 002877 224 KVVCETAKSKEVEIRQAAFECLVSIASTY---------YEVLEPYMQTLFELTSN-AVKGDEEAVALQAVEFWSSICDEE 293 (872)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~al~~l~~l~~~~ 293 (872)
+.....++.+++-.+..|..++..++... ++.|. .+..++.-++. ...++.+.+....+.+...++++.
T Consensus 148 plCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~-av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 148 PLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS-HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 77777787788888888888888887543 11221 12233333333 334566777777777777777764
Q ss_pred h
Q 002877 294 I 294 (872)
Q Consensus 294 ~ 294 (872)
.
T Consensus 227 r 227 (268)
T 2fv2_A 227 R 227 (268)
T ss_dssp H
T ss_pred H
Confidence 3
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.48 E-value=57 Score=30.25 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 002877 792 QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCNDFMSECLRSDDEQLKETAGWT 862 (872)
Q Consensus 792 ~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~a~~~ 862 (872)
...+..|.+-+.. .++.+...|+.++.-+++++|..+....-...|+..|.+..-...+++|+..+.-.
T Consensus 44 k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~l 112 (226)
T 3zyq_A 44 KYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYL 112 (226)
T ss_dssp HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4455666665554 57889999999999999999998666666777877776653345677888776533
No 155
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=49.80 E-value=1.1e+02 Score=25.28 Aligned_cols=67 Identities=7% Similarity=0.147 Sum_probs=51.8
Q ss_pred hHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHH
Q 002877 407 LVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLA 485 (872)
Q Consensus 407 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~ 485 (872)
....-+...++.|+.....++..+.|++.. ..+.+.++..+.+.+.. .+.-+....+.+..++
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h----------------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl 68 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIEN----------------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVI 68 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHT----------------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 345566777788888888899999998753 23566788888888877 7778888999999999
Q ss_pred Hhhc
Q 002877 486 QGYE 489 (872)
Q Consensus 486 ~~~~ 489 (872)
..+.
T Consensus 69 ~ns~ 72 (132)
T 4flb_A 69 QNCK 72 (132)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 8874
No 156
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=49.27 E-value=1.7e+02 Score=27.42 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH------HHHhhhhhhhH-HH
Q 002877 148 ALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD------FALTNFQNEME-RN 220 (872)
Q Consensus 148 ~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~------~~~~~~~~~~~-~~ 220 (872)
-.|-+++.+++.+++.-+++.+..--..+++|..+..++. .+.--|..|.-.+..++. |+....+.-.. ..
T Consensus 117 ~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~--GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~ 194 (268)
T 2fv2_A 117 YLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES--GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAM 194 (268)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh--ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHH
Confidence 4788999999999987655554222235689999999988 566667777777776652 11111110000 01
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Q 002877 221 YIMKVVCETAKSKEVEIRQAAFECLVSIAST 251 (872)
Q Consensus 221 ~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (872)
.+-+.+.+..+++++...+.+++|...+.+.
T Consensus 195 vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 195 ILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 1223444455677888888888888887653
No 157
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=48.06 E-value=58 Score=27.87 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhcccchHhHHHHHHHHHHHHHHHhcCCccccH--HHHHHH-HHHHhcCC-CCCCCCchhHHHHHHHHHHh
Q 002877 649 PEFYQYLQMGLQNSEEYQVCAITVGVVGDVCRALDDKVLPFC--DGIMSL-LLNALSNS-QLNRSVKPPILSCFGDIALA 724 (872)
Q Consensus 649 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~-~~~~~~~~~~~~~l~~l~~~ 724 (872)
...+..|.+.+....++.+...|+.++..+++++|..|...+ ..+++. |.+++... ..+..||..++..+..-+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 356666666676434555777799999999999997665544 356654 56655433 12346888888888887776
Q ss_pred hccch-hhhHHHHHHH
Q 002877 725 IGVHF-EKYVPHALQM 739 (872)
Q Consensus 725 ~~~~~-~~~l~~i~~~ 739 (872)
++..- .+++..++..
T Consensus 132 F~~~p~l~~i~~~Y~~ 147 (152)
T 3rru_A 132 FPGGVDVSEVKEVYLD 147 (152)
T ss_dssp CSSSCCCHHHHHHHHH
T ss_pred hCCCCcchHHHHHHHH
Confidence 65421 2344444433
No 158
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=46.89 E-value=92 Score=26.80 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHHHHhhhCcchhhhccCchHHHH-HHHHHhc--CCcHHHHHHHH
Q 002877 792 QHLLQFIELIFKDNHRDENVTKAAVAVMGDLADALGPNTKLLFKDSSFCND-FMSECLR--SDDEQLKETAG 860 (872)
Q Consensus 792 ~~il~~l~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~-ll~~~~~--~~~~~~~~~a~ 860 (872)
...+..|.+-+.. +.+..+...|+.++..++++||..+-...-...|+.. |++.... ++...||+.+.
T Consensus 52 k~a~ral~krl~~-~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil 122 (157)
T 1elk_A 52 KDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVL 122 (157)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 4455566655542 2467888899999999999999987665667778888 5564322 34457887765
No 159
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=45.89 E-value=61 Score=29.88 Aligned_cols=88 Identities=9% Similarity=0.001 Sum_probs=56.5
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCCc
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDEN 423 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~ 423 (872)
|.+....+.+++.+....++ .+.+.+.....|++.-.|.+|+.++ +. .. -......+++.+-..+.|++
T Consensus 104 Wd~~D~~a~~~~~~~~~~~~----~~~~~i~~W~~s~~~w~rR~ai~~~--l~-~~----~~~~~~~~~~i~~~~~~d~~ 172 (220)
T 2b6c_A 104 WDSVDAWRKFFGSWVALHLT----ELPTIFALFYGAENFWNRRVALNLQ--LM-LK----EKTNQDLLKKAIIYDRTTEE 172 (220)
T ss_dssp HHHHHHHHHHHHHHHHHSGG----GHHHHHHHHTTCSSHHHHHHHHHTT--TT-CG----GGCCHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHChH----HHHHHHHHHHcCCCHHHHHHHHHHH--HH-HH----HCCCHHHHHHHHHHhCCChH
Confidence 88777655555555544332 2456677788887744455554422 21 11 12234566777777889999
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 002877 424 NHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 424 ~~vr~~a~~~l~~l~~~~~ 442 (872)
..|+.+..|+|..+++..+
T Consensus 173 ~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 173 FFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp HHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHhhCH
Confidence 9999999999999886554
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=44.33 E-value=1.1e+02 Score=25.69 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhHhHHhHh
Q 002877 260 MQTLFELTSNAVKGDEEAVALQAVEFWSSICDE 292 (872)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 292 (872)
...+++++..-+.+..+.+...|+.++.-++.+
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 467888888888988899999999999888875
No 161
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=42.56 E-value=1.7e+02 Score=27.10 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=52.3
Q ss_pred cchhhhH-HHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCCccchhHhHHhHHHHHHHhcCCC
Q 002877 344 WNISMAG-GTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDE 422 (872)
Q Consensus 344 ~~~r~~a-~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~ 422 (872)
|.+.... ...++.+....++.. .+.+.....|++.-.|.+|+.++ +.. ........+++.+...+.|+
T Consensus 110 Wd~~D~~a~~~~g~~~~~~p~~~----~~~l~~W~~s~~~w~rR~ai~~~--l~~-----~~~~d~~~~~~~i~~~~~d~ 178 (232)
T 3jxy_A 110 WDSVDSIVPTFLGDIFLKHPELI----SAYIPKWIASDNIWLQRAAILFQ--LKY-----KQKMDEELLFWIIGQLHSSK 178 (232)
T ss_dssp HHHHHHHTTTHHHHHHHHCGGGG----GGTHHHHHHSSCHHHHHHHHHTT--TTC-----GGGCCHHHHHHHHHHHTTCC
T ss_pred hHHHHHhhHHHHHHHHHHCHHHH----HHHHHHHhcCCchHHHHHHHHHH--HHH-----HhCCCHHHHHHHHHHhcCCH
Confidence 8776554 344555555544333 34455566666643444444332 111 11112335566777788999
Q ss_pred cHHHHHHHHHHHHHHHhhcc
Q 002877 423 NNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 423 ~~~vr~~a~~~l~~l~~~~~ 442 (872)
+..|+.+..|+|..++...+
T Consensus 179 ~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 179 EFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp CHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHhhCH
Confidence 99999999999999886554
No 162
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=41.06 E-value=72 Score=29.78 Aligned_cols=74 Identities=8% Similarity=-0.015 Sum_probs=51.1
Q ss_pred hchHHHHHhhccCCCcchHHHHHH----HHHHhhcCCCccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhcc
Q 002877 367 PLVMPFVEANIVKSDWRCREAATY----AFGSVLEGPTIDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLH 442 (872)
Q Consensus 367 ~~l~~~l~~~l~~~~~~~r~aal~----~l~~i~~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 442 (872)
|...+.+.....|++.-.|.+|+. .+..+ .....-...+..++..+...+.|++..|+.+..|+|..++...+
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~---~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNR---KDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHS---CGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhc---cccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 445677777777877444555555 33331 11111245677888888889999999999999999999987655
Q ss_pred C
Q 002877 443 C 443 (872)
Q Consensus 443 ~ 443 (872)
+
T Consensus 184 ~ 184 (235)
T 1t06_A 184 P 184 (235)
T ss_dssp G
T ss_pred H
Confidence 3
No 163
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.88 E-value=1.9e+02 Score=24.73 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHc-cCChhHHHHHHHHHHHHHHHhhhHHHhhh--HHHHHH-HHhhhccc--chHhHHHHHHHHHHHHHHH
Q 002877 608 DQIMVLFLRVFA-CRSSTVHEEAMLAIGALAYATGPEFAKYM--PEFYQY-LQMGLQNS--EEYQVCAITVGVVGDVCRA 681 (872)
Q Consensus 608 ~~l~~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~-l~~~l~~~--~~~~v~~~a~~~l~~l~~~ 681 (872)
...+..+...+. +.++.+.-.|+.++..+++++|..|..-+ ..++.. +.+.+... ....|+..++.++...+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 456777777886 46788889999999999999998776532 245554 44444321 2346999999999888887
Q ss_pred hc
Q 002877 682 LD 683 (872)
Q Consensus 682 ~~ 683 (872)
++
T Consensus 132 f~ 133 (157)
T 1elk_A 132 FR 133 (157)
T ss_dssp HT
T ss_pred cC
Confidence 75
No 164
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=35.15 E-value=2.4e+02 Score=27.39 Aligned_cols=113 Identities=9% Similarity=-0.030 Sum_probs=0.0
Q ss_pred hchHHHHHhhccCCC-cchHHHHHHHHHHhhcCCC-ccchhHhHHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCC
Q 002877 367 PLVMPFVEANIVKSD-WRCREAATYAFGSVLEGPT-IDKLAPLVHAGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCP 444 (872)
Q Consensus 367 ~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~-~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 444 (872)
..++..+...+.++. +..+..++.++..+-.... .+.+......+++.+...+.+++..+|.+++.++-+++-....
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~- 224 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHK- 224 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh-
Q ss_pred CCCccccCcccHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHH
Q 002877 445 ATGFSVISPENLQRILTVLLESIKD--APNVAEKVCGAIYYLA 485 (872)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~l~~~l~d--~~~v~~~a~~al~~l~ 485 (872)
....+....++..+...+.. ++....++..++++++
T Consensus 225 -----~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 225 -----DHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp -----SCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred -----cCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
No 165
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=30.71 E-value=2.4e+02 Score=23.69 Aligned_cols=75 Identities=8% Similarity=0.042 Sum_probs=54.6
Q ss_pred CchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q 002877 128 QWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVNAVLTAVVQGMNLAEHSAEVRLAATRALYNALD 207 (872)
Q Consensus 128 ~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 207 (872)
.-..++..+.+.+... .+..+-.++.++..+++..++++. ..+...+.+.+...... .+..+|....+++..|-.
T Consensus 40 ~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~-~~F~~~l~~~f~~~~~~--~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYT-IYFSRNLFNLYKRTYLL--VDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp GHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHH-HHHHTTHHHHHHHHHHT--SCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhC
Confidence 4456777777777766 788999999999999999864433 44445555666666655 467899999999888754
No 166
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=29.84 E-value=2.3e+02 Score=23.28 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=47.0
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhh
Q 002877 410 AGFDFLLNAMRDENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGY 488 (872)
Q Consensus 410 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~ 488 (872)
+.+...++.|+...+.++..+.|++.. ..+...++..+.+.+.. .+.-+...++.+..++..+
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~----------------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHH----------------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHT----------------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 345556677788888899999998753 23566777777777776 6666778889888888776
Q ss_pred c
Q 002877 489 E 489 (872)
Q Consensus 489 ~ 489 (872)
.
T Consensus 71 ~ 71 (135)
T 4fu3_A 71 K 71 (135)
T ss_dssp T
T ss_pred H
Confidence 3
No 167
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=29.35 E-value=3.4e+02 Score=24.99 Aligned_cols=152 Identities=9% Similarity=-0.035 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHH
Q 002877 17 ANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDL 96 (872)
Q Consensus 17 ~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~ 96 (872)
|++|+-|.+...+.......+ +..++.-|..+ ..-+.|.+|..+++... ..++++....+. .
T Consensus 41 P~lR~laK~~~k~~~~~~~~~-~~~~~~~L~~~-~~~E~r~~ai~~l~~~~---------------k~~~~~~l~~~~-~ 102 (232)
T 3jxy_A 41 PERRQLLKDIIQIHTLPDQKD-FQIIIRELWDL-PEREFQAAALDIMQKYK---------------KHINETHIPFLE-E 102 (232)
T ss_dssp HHHHHHHHHHHHHHCCCCGGG-HHHHHHHHHTS-SBHHHHHHHHHHHHHTG---------------GGCCGGGHHHHH-H
T ss_pred HHHHHHHHHHHHhccccchhh-HHHHHHHHhcC-cHHHHHHHHHHHHHHHH---------------HhCCHHHHHHHH-H
Confidence 344554554444433221122 22233334332 45779999988887432 223444444443 2
Q ss_pred HHHhhcCCChhHhhHHH-HHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhHH
Q 002877 97 LLRTLASPVPEARHTSA-QVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEVN 175 (872)
Q Consensus 97 Ll~~l~~~~~~vr~~~~-~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~~ 175 (872)
++. ...+..+.-..| .+++.+.... |. .+.+.+...+.|+ +.-.|+.|+.++-.. . . .....
T Consensus 103 ~l~--~~~nWd~~D~~a~~~~g~~~~~~-p~----~~~~~l~~W~~s~--~~w~rR~ai~~~l~~--~-----~-~~d~~ 165 (232)
T 3jxy_A 103 LIV--TKSWWDSVDSIVPTFLGDIFLKH-PE----LISAYIPKWIASD--NIWLQRAAILFQLKY--K-----Q-KMDEE 165 (232)
T ss_dssp HHT--SSCCHHHHHHHTTTHHHHHHHHC-GG----GGGGTHHHHHHSS--CHHHHHHHHHTTTTC--G-----G-GCCHH
T ss_pred HHc--cCCChHHHHHhhHHHHHHHHHHC-HH----HHHHHHHHHhcCC--chHHHHHHHHHHHHH--H-----h-CCCHH
Confidence 222 235666655553 6677776553 42 1345677788888 788887777654111 1 1 22344
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 002877 176 AVLTAVVQGMNLAEHSAEVRLAATRALYNA 205 (872)
Q Consensus 176 ~l~~~l~~~l~~~~~~~~vr~~al~~l~~~ 205 (872)
.+++.+...+.+ +..-|+.+.--+|..+
T Consensus 166 ~~~~~i~~~~~d--~~~yV~kAvgW~Lr~~ 193 (232)
T 3jxy_A 166 LLFWIIGQLHSS--KEFFIQKAIGWVLREY 193 (232)
T ss_dssp HHHHHHHHHTTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 556666666776 6788998887777764
No 168
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=28.29 E-value=4.1e+02 Score=25.65 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHhcChHHH--------HHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCCh
Q 002877 16 DANIRNEAEANLRQLQQQNLPGF--------LLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDI 87 (872)
Q Consensus 16 ~~~~r~~A~~~L~~~~~~~~~~~--------~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~ 87 (872)
|.+.-..|-..|.++.+. ..| ...|-.++.+...++.+|..|+.++...++.+... .+.....|+.+-.
T Consensus 41 D~~~le~aLD~L~ElSHD--i~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~A-l~~V~~~~p~fv~ 117 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHD--YKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNPPV-VEFINESFPNFKS 117 (315)
T ss_dssp HHHHHHHHHHHHGGGTTS--HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHHCTTHHH
T ss_pred cHHHHHHHHHHHHHhhhh--HHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHH-HHHHHHhChhHHH
Confidence 445566677777776664 222 12344455555678899999999999988765443 3334446755443
Q ss_pred HHH
Q 002877 88 SYK 90 (872)
Q Consensus 88 ~~~ 90 (872)
...
T Consensus 118 ~lf 120 (315)
T 3qml_C 118 KIM 120 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 169
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=27.94 E-value=3e+02 Score=27.82 Aligned_cols=121 Identities=9% Similarity=0.085 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 002877 170 VQDEVNAVLTAVVQGMNLA--EHSAEVRLAATRALYNALDFALTNFQNEMERNYIMKVVCETAKSKEVEIRQAAFECLVS 247 (872)
Q Consensus 170 ~~~~~~~l~~~l~~~l~~~--~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~l~~ 247 (872)
|...+-.++..+...-... +.+......+++||..++.+-.. +..-...+..+..+..++.++.+.++..++++|..
T Consensus 110 Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G-~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~ 188 (383)
T 3eg5_B 110 GLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFG-IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA 188 (383)
T ss_dssp HHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHH-HHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhh-HHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHH
Q ss_pred HHHhhh-hh-hHHhHHHH-----------HHHHHHHhcC-CChHHHHHHHHhHhHHhH
Q 002877 248 IASTYY-EV-LEPYMQTL-----------FELTSNAVKG-DEEAVALQAVEFWSSICD 291 (872)
Q Consensus 248 l~~~~~-~~-~~~~l~~l-----------~~~~~~~~~~-~~~~~~~~al~~l~~l~~ 291 (872)
++.... .- ....++.+ |..++..+.+ .+.+++..++.|+..++.
T Consensus 189 lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 189 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 246 (383)
T ss_dssp HHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
No 170
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=25.98 E-value=2.4e+02 Score=22.04 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=51.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhccc--CCc-ccchHHHHhhhhcCChH
Q 002877 12 AQSADANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLD--AKD-ATTKEDLAKQWLAIDIS 88 (872)
Q Consensus 12 ~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~--~~~-~~~~~~~~~~w~~l~~~ 88 (872)
..|.+++.+.+..+.|.+--+. ...-..|-.-|.....-+++|.+|--.++..=. -+. .--....+.....+|++
T Consensus 5 ~~~~e~~lka~I~~~LveSGe~--erL~~lL~~rL~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~ 82 (101)
T 4dhx_B 5 KMNKDAQMRAAINQKLIETGER--ERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDS 82 (101)
T ss_dssp ----CHHHHHHHHHHHHHTTHH--HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHH
T ss_pred cccchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHH
Confidence 3566788888888888765554 445455556676666778999999888875410 000 00111223334457777
Q ss_pred HHHHHHHHHHHhhc
Q 002877 89 YKSQVKDLLLRTLA 102 (872)
Q Consensus 89 ~~~~i~~~Ll~~l~ 102 (872)
.+..+...+-.+|.
T Consensus 83 VK~Ell~rIr~fL~ 96 (101)
T 4dhx_B 83 VKKELLQRIRTFLA 96 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666666655553
No 171
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.62 E-value=3.1e+02 Score=23.27 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcc-CChhHHHHHHHHHHHHHHHhhhHHHhhhH--HHHHH-HHhhhccc--chHhHHHHHHHHHHHHHHH
Q 002877 608 DQIMVLFLRVFAC-RSSTVHEEAMLAIGALAYATGPEFAKYMP--EFYQY-LQMGLQNS--EEYQVCAITVGVVGDVCRA 681 (872)
Q Consensus 608 ~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~--~i~~~-l~~~l~~~--~~~~v~~~a~~~l~~l~~~ 681 (872)
...+..+...+.. .++.+...|+.++..+++++|..|...+. .++.- |.+.+... ....|+..++.++...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4566667777764 46677778999999999999987765442 45543 44444432 2346899999998888877
Q ss_pred hc
Q 002877 682 LD 683 (872)
Q Consensus 682 ~~ 683 (872)
++
T Consensus 132 F~ 133 (152)
T 3rru_A 132 FP 133 (152)
T ss_dssp CS
T ss_pred hC
Confidence 65
No 172
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=23.89 E-value=4.1e+02 Score=24.14 Aligned_cols=152 Identities=6% Similarity=-0.052 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHH
Q 002877 16 DANIRNEAEANLRQLQQQNLPGFLLSLSVELVNNEKPTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKD 95 (872)
Q Consensus 16 ~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~ 95 (872)
.|++|+-|.+............-+ .++.-|.. +..-+.|.+|+.++...-. .+.++....+
T Consensus 34 ~P~lR~laK~~~k~~~~~~~~~~~-~~~~~L~~-s~~~E~r~la~~~l~~~~~---------------~~~~~~l~~~-- 94 (220)
T 2b6c_A 34 APERQALSKQLLKESHTWPKEKLC-QEIEAYYQ-KTEREYQYVAIDLALQNVQ---------------RFSLEEVVAF-- 94 (220)
T ss_dssp HHHHHHHTHHHHHHHTTSCHHHHH-HHHHHHHT-SSSHHHHHHHHHHHHHTGG---------------GCCHHHHHHG--
T ss_pred hHHHHHHHHHHHHHhccCcccchH-HHHHHHHc-CchhHHHHHHHHHHHHHHh---------------hCCHHHHHHH--
Confidence 356676666655442121111223 33333443 2468899999998875421 1223222111
Q ss_pred HHHHhhc-CCChhHhhHHHHHHHHHHHhhcCCCCchHHHHHHHHhhccCCccHHHHHHHHHHHHHhhhccCccccchhhH
Q 002877 96 LLLRTLA-SPVPEARHTSAQVIAKIASIEIPQKQWPELIRSLLNNMTQQDSLAALKQATLETLGYVCEEISHQDLVQDEV 174 (872)
Q Consensus 96 ~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~~~~~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~l~~~~~ 174 (872)
-..+. -.+..+.-..|.+++.++... |. .+.+.+.+.+.|+ +.-.|+.|+.++-.. . . ..+.
T Consensus 95 --~~~l~~~~nWd~~D~~a~~~~~~~~~~-~~----~~~~~i~~W~~s~--~~w~rR~ai~~~l~~---~-~----~~~~ 157 (220)
T 2b6c_A 95 --KAYVPQKAWWDSVDAWRKFFGSWVALH-LT----ELPTIFALFYGAE--NFWNRRVALNLQLML---K-E----KTNQ 157 (220)
T ss_dssp --GGGTTTTCSHHHHHHHHHHHHHHHHHS-GG----GHHHHHHHHTTCS--SHHHHHHHHHTTTTC---G-G----GCCH
T ss_pred --HHHhccCCcHHHHHHHHHHHHHHHHHC-hH----HHHHHHHHHHcCC--CHHHHHHHHHHHHHH---H-H----CCCH
Confidence 12222 356777777777677776442 31 2566788889888 888887777644111 1 1 3345
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q 002877 175 NAVLTAVVQGMNLAEHSAEVRLAATRALYNA 205 (872)
Q Consensus 175 ~~l~~~l~~~l~~~~~~~~vr~~al~~l~~~ 205 (872)
+.+++.+...+.+ +..-|+.+.--+|..+
T Consensus 158 ~~~~~i~~~~~~d--~~~yV~kavgW~Lr~~ 186 (220)
T 2b6c_A 158 DLLKKAIIYDRTT--EEFFIQKAIGWSLRQY 186 (220)
T ss_dssp HHHHHHHHHTTTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--hHHHHHHHHHHHHHHH
Confidence 6667777777877 6788998888777764
No 173
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=23.73 E-value=3.1e+02 Score=22.66 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=43.5
Q ss_pred CcccHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHH
Q 002877 452 SPENLQRILTVLLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYET 530 (872)
Q Consensus 452 ~~~~~~~~l~~l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~a 530 (872)
..+.+..+++.|+.-++| |+.+...++..|..+ -..++|.+.+.+++.| -.-.+..
T Consensus 25 ~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~-----------------~~~l~p~I~~vl~s~D------~~W~ywi 81 (134)
T 3ut4_A 25 IDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLH-----------------QSIAMPHILTILQGND------IMWKYWV 81 (134)
T ss_dssp CHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT-----------------HHHHHHHHHHHHHSSC------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHc-----------------cHhhHHHHHHHHHcCC------hHHHHHH
Confidence 346778899999999999 988866666555432 2344555555555434 3466788
Q ss_pred HHHHHhcCC
Q 002877 531 LNEVVRCSN 539 (872)
Q Consensus 531 l~~l~~~~~ 539 (872)
+..++...+
T Consensus 82 l~~lv~~~~ 90 (134)
T 3ut4_A 82 IKLMIPYLI 90 (134)
T ss_dssp HHHHGGGCC
T ss_pred HHHHHHcCC
Confidence 888887776
No 174
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=22.84 E-value=3.4e+02 Score=22.78 Aligned_cols=83 Identities=12% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHhhc-ChHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHhcCCCc
Q 002877 463 LLESIKD-APNVAEKVCGAIYYLAQGYEDAGPSSSLLSPYLTSIIAELLRAADRTDVGGSKLRSAAYETLNEVVRCSNIT 541 (872)
Q Consensus 463 l~~~l~d-~~~v~~~a~~al~~l~~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~al~~l~~~~~~~ 541 (872)
-+..|.+ .+.+.......|..+|... ..+...|+..+.+.+.+.. ..-|..++-.+..+++..+ .
T Consensus 10 ~L~~L~~~k~~~S~~~I~~LT~~a~~~----------~~~~~~IV~~~~~~i~k~~---~~~KL~~LYL~DsIvrn~~-~ 75 (145)
T 3d9j_A 10 ELYSLNDYKPPISKAKMTQITKAAIKA----------IKFYKHVVQSVEKFIQKCK---PEYKVPGLYVIDSIVRQSR-H 75 (145)
T ss_dssp HHHGGGGSCSSCCHHHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhCC---ccceeehhhhhHHHHHHhh-h
Confidence 3444444 3234444555666666554 3467788888877776543 2238889999999998776 3
Q ss_pred cc----HHHHHHHHHHHHHHHH
Q 002877 542 ET----SQIIAELLPAIMGRLG 559 (872)
Q Consensus 542 ~~----~~~~~~l~~~l~~~l~ 559 (872)
.. .+|...+.+.+.+.+.
T Consensus 76 k~~~~~~~f~~~F~~~L~~~f~ 97 (145)
T 3d9j_A 76 QFGQEKDVFAPRFSNNIISTFQ 97 (145)
T ss_dssp HHCTTTCSHHHHHHHHHHHHHH
T ss_pred hcCCccccHHHHHHHHHHHHHH
Confidence 11 1344444444544443
No 175
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.07 E-value=2.8e+02 Score=23.97 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHhhcccCCcccchHHHHhhhhcCChHHHHHHHHHHHHhhcC---CChhHhhHHHHHHHHHHHhh
Q 002877 52 PTESRRLAGIMLKNSLDAKDATTKEDLAKQWLAIDISYKSQVKDLLLRTLAS---PVPEARHTSAQVIAKIASIE 123 (872)
Q Consensus 52 ~~~vr~~a~~~l~~~i~~~~~~~~~~~~~~w~~l~~~~~~~i~~~Ll~~l~~---~~~~vr~~~~~~l~~i~~~~ 123 (872)
.+.-|.+++.+|..... ..++++....=...++..+.+ ..|.+-..++..++..+..+
T Consensus 57 k~~ere~~s~LL~~L~~--------------~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~ 117 (165)
T 2rg8_A 57 KASHREMTSKLLSDLCG--------------TVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG 117 (165)
T ss_dssp CHHHHHHHHHHHHHHBT--------------TTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHH--------------CCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcC
Confidence 46667777777766531 345655544434455555544 35777777888887766554
No 176
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.32 E-value=5.1e+02 Score=24.24 Aligned_cols=137 Identities=9% Similarity=0.073 Sum_probs=76.3
Q ss_pred cchhhhHHHHHHHHHhhcCCcchhchHHHHHhhccCCCcchHHHHHHHHHHhhcCCC-cc-chhHh--HHhHHHHHHHhc
Q 002877 344 WNISMAGGTCLGLVARTVGDEVVPLVMPFVEANIVKSDWRCREAATYAFGSVLEGPT-ID-KLAPL--VHAGFDFLLNAM 419 (872)
Q Consensus 344 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~-~~~~~--l~~l~~~l~~~l 419 (872)
|..+-.+.+.++.+....+ ....+..++...+.+..+..+..++.++..+-.... .. .+... ...++..+...+
T Consensus 68 WP~~fP~lDllRl~~~~~~--~~~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~ 145 (253)
T 3gae_A 68 WEIKTPAYDIVRLIVKKLP--YSSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEF 145 (253)
T ss_dssp CSCCHHHHHHHHHHGGGCS--CGGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCC
T ss_pred CCccchHHHHHHHHHcCCc--hHHHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHh
Confidence 6556666777766655443 223444455555444445566677777766654431 01 11111 234444444444
Q ss_pred CC----CcHHHHHHHHHHHHHHHhhccCCCCCccccCcccHHHHHHHHHHH---h---hcChHHHHHHHHHHHHHHHh
Q 002877 420 RD----ENNHVKDTTAWTLSRIFELLHCPATGFSVISPENLQRILTVLLES---I---KDAPNVAEKVCGAIYYLAQG 487 (872)
Q Consensus 420 ~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---l---~d~~~v~~~a~~al~~l~~~ 487 (872)
.| ++..+|-+++..+-+++-..... ....+....++..+... . ++++....++..++++++..
T Consensus 146 ~~~~~~~~~nl~iA~ATl~~N~av~~~~~-----~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 146 SQASAKQSQNLAIAVSTLIFNYSALVTKG-----NSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHTS-----CSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCchhHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 33 47789999988888888765541 11223444555555432 2 23677888899999998853
No 177
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=20.71 E-value=3.8e+02 Score=22.49 Aligned_cols=93 Identities=11% Similarity=0.004 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHhhh-------HHHhhhHHHHHHHHhhhcccchHhHHHHHHHHHHHH
Q 002877 606 TADQIMVLFLRVFACRSSTVHEEAMLAIGALAYATGP-------EFAKYMPEFYQYLQMGLQNSEEYQVCAITVGVVGDV 678 (872)
Q Consensus 606 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-------~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 678 (872)
+...+++.+...+....+.-|-.++.++.+++++.+. .|.+.+...++.++..+-.. ++..+.....++..-
T Consensus 39 ~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~-~~~~r~kl~rLl~iW 117 (145)
T 3d9j_A 39 FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRC-PGDDKSKIVRVLNLW 117 (145)
T ss_dssp GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSS-CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 5677888888888877788899999999999999887 34444433333332222121 133554444444433
Q ss_pred HHHhcCCccccHHHHHHHHHHHhcCC
Q 002877 679 CRALDDKVLPFCDGIMSLLLNALSNS 704 (872)
Q Consensus 679 ~~~~~~~~~~~~~~i~~~l~~~l~~~ 704 (872)
-+. .-|-+.++..+...+..+
T Consensus 118 ~~r-----~vF~~~~l~~l~~~l~~~ 138 (145)
T 3d9j_A 118 QKN-----NVFKSEIIQPLLDMAAAL 138 (145)
T ss_dssp HHT-----TSSCHHHHHHHHHHHHHC
T ss_pred cCC-----CCCCHHHHHHHHHHhcCc
Confidence 221 123345566666655544
Done!