BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002878
(872 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 44 LKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKL 103
L++ +E LV + +V+ L N +L+K ++ + ILE L +N + +++ + EDE
Sbjct: 318 LEILSEWLVFRRDTVRRRL---NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK 374
Query: 104 WKGLESKFSSTKTLSDQLTET-LQHLA 129
L S+F T+T ++ + E L+HLA
Sbjct: 375 -PALMSRFGLTETQAEAILELKLRHLA 400
>pdb|3MVB|O Chain O, Crystal Structure Of A Triple Rfy Mutant Of Human Mterf1
Bound To The Termination Sequence
Length = 343
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 302 KQSLTFMEKFYQLNSH---YESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIA------- 351
K ++ F+ + LNS C ++ DLS+ A+ Y + +K FS+
Sbjct: 200 KANIEFLRSTFNLNSEELLVLICGPGAEI-LDLSNDAARRSYANIKEKLFSLGCTEEEVQ 258
Query: 352 ----SEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALIS 405
S D + L ++ N KI L + S+ +Q +E R+ IS L+S + L++
Sbjct: 259 KFVLSYPDVIFLAEKKFNDKIDCLMEENISI-SQIIENPRVLDSSISTLKSRIKELVN 315
>pdb|3MVA|O Chain O, Crystal Structure Of Human Mterf1 Bound To The Termination
Sequence
Length = 343
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 302 KQSLTFMEKFYQLNSH---YESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIA------- 351
K ++ F+ + LNS C ++ DLS+ A+ Y + +K FS+
Sbjct: 200 KANIEFLRSTFNLNSEELLVLICGPGAEI-LDLSNDYARRSYANIKEKLFSLGCTEEEVQ 258
Query: 352 ----SEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALIS 405
S D + L ++ N KI L + S+ +Q +E R+ IS L+S + L++
Sbjct: 259 KFVLSYPDVIFLAEKKFNDKIDCLMEENISI-SQIIENPRVLDSSISTLKSRIKELVN 315
>pdb|1OG3|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2 Mutant E189i In
Complex With Nad
Length = 226
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 76 VRILEEK----LQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSD 119
V +EEK LQ N NAKLKV +E +K W ++ S K +D
Sbjct: 22 VNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFND 69
>pdb|3N6S|A Chain A, Crystal Structure Of Human Mitochondrial Mterf In Complex
With A 15- Mer Dna Encompassing The Trnaleu(Uur) Binding
Sequence
Length = 353
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 302 KQSLTFMEKFYQLNSH---YESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIA------- 351
K ++ F+ + LNS C ++ DLS+ A+ Y + +K FS+
Sbjct: 201 KANIEFLRSTFNLNSEELLVLICGPGAEI-LDLSNDYARRSYANIKEKLFSLGCTEEEVQ 259
Query: 352 ----SEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALI 404
S D + L ++ N KI L + S+ +Q +E R+ IS L+S + L+
Sbjct: 260 KFVLSYPDVIFLAEKKFNDKIDCLMEENISI-SQIIENPRVLDSSISTLKSRIKELV 315
>pdb|1OG4|A Chain A, Crystal Structure Of The Eucaryotic
Mono-adp-ribosyltransferase Art2.2 Mutant E189a In
Complex With Nadh
Length = 226
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 76 VRILEEK----LQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSD 119
V +EEK LQ N NAKLKV +E +K W ++ S K +D
Sbjct: 22 VNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFND 69
>pdb|1GXY|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A (P21)
pdb|1GXY|B Chain B, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A (P21)
pdb|1GXZ|A Chain A, Crystal Structure Of The Eucaryotic Mono-Adp-
Ribosyltransferase Art2.2; Crystal Form B (P212121)
pdb|1GXZ|B Chain B, Crystal Structure Of The Eucaryotic Mono-Adp-
Ribosyltransferase Art2.2; Crystal Form B (P212121)
pdb|1GY0|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form C
(P3121)
pdb|1OG1|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2 In Complex With Tad
Length = 226
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 76 VRILEEK----LQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSD 119
V +EEK LQ N NAKLKV +E +K W ++ S K +D
Sbjct: 22 VNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFND 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,287,473
Number of Sequences: 62578
Number of extensions: 795277
Number of successful extensions: 3312
Number of sequences better than 100.0: 231
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 2884
Number of HSP's gapped (non-prelim): 523
length of query: 872
length of database: 14,973,337
effective HSP length: 107
effective length of query: 765
effective length of database: 8,277,491
effective search space: 6332280615
effective search space used: 6332280615
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)