BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002878
(872 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LME2|SYCP1_ARATH Synaptonemal complex protein 1 OS=Arabidopsis thaliana GN=ZYP1A
PE=2 SV=1
Length = 871
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/876 (54%), Positives = 679/876 (77%), Gaps = 9/876 (1%)
Query: 1 MQKLGFPSVKSLDQFKSLSRSAKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKT 60
MQKLGFP++KSLD+ +SLS SA +SFS+R DS++SGSF+NLKLTAEKLVK+QA+++T
Sbjct: 1 MQKLGFPAMKSLDKPRSLSGSANMYSFSNRKPPDSVSSGSFSNLKLTAEKLVKDQAAMRT 60
Query: 61 DLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQ 120
DLE+AN KLKKSMEHV LEEKLQNA NENAKL+V++KEDEKLW+GLESKFSSTKTL DQ
Sbjct: 61 DLELANCKLKKSMEHVYALEEKLQNAFNENAKLRVRKKEDEKLWRGLESKFSSTKTLCDQ 120
Query: 121 LTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKE 180
LTETLQHLASQVQDAEK+K FFE K S+S A+D QQM +SL+L +A+E IT R+KE
Sbjct: 121 LTETLQHLASQVQDAEKDKGFFETKFSTSSEAIDSLNQQMRDMSLRLDAAKEEITSRDKE 180
Query: 181 LEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHID 240
LE+LK+E+++++ Y+ E C T++L++K DA+I KLE + A+ +L E+LNS++E++H++
Sbjct: 181 LEELKLEKQQKEMFYQTERCGTASLIEKKDAVITKLEASAAERKLNIENLNSQLEKVHLE 240
Query: 241 LQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDL 300
L +KEDE+K L+ +E LEKEK+ +Q+S D+ +KLV+S +E+K L+ V A+L +L
Sbjct: 241 LTTKEDEVKDLVSIQEKLEKEKTSVQLSADNCFEKLVSSEQEVKKLDELVQYLVAELTEL 300
Query: 301 DKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLV 360
DK++LTF EKF +L+ Y++ +Q +RDL+ +AQ +D L + F +A+ K+AL+
Sbjct: 301 DKKNLTFKEKFDKLSGLYDTHIMLLQKDRDLALDRAQRSFDNLQGELFRVAATKEALESA 360
Query: 361 NQELNSKIIKLQKTQESVKAQCLEECRLA-GEKISRLESEAEALISKKIETELLVSKLEK 419
ELN KI++LQ +ES+ +Q L R + + I +LESEA+ L+SK + E +S+L++
Sbjct: 361 GNELNEKIVELQNDKESLISQ-LSGLRCSTSQTIDKLESEAKGLVSKHADAESAISQLKE 419
Query: 420 EIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEM 479
E+++LLE++++ E+K Q+ LK+SSLEME+KE EK A+ Q++ EE+ L++E E ++
Sbjct: 420 EMETLLESVKTSEDKKQELSLKLSSLEMESKEKCEKLQADAQRQVEELETLQKESESHQL 479
Query: 480 LVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDL 539
D + K+ QLQ ++ EK ++LQ N+ EK+L QI +++ L AE++L+EAKKQYDL
Sbjct: 480 QADLLAKEVNQLQTVIEEKGHVILQCNENEKQLNQQIIKDKELLATAETKLAEAKKQYDL 539
Query: 540 MLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEKADKTIGEMERKCDQK 599
MLESKQLELSRHLKE+SQRNDQ IN+IRRKY+VEK EI+N EK+K +K I ++ K D++
Sbjct: 540 MLESKQLELSRHLKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKIIKDLSNKFDKE 599
Query: 600 LAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELREKT 659
L++CKEE+K+QL IQEEH+++++S+++E++ KE+NLKA++ EL+ +++QAENEL+E+
Sbjct: 600 LSDCKEESKRQLLTIQEEHSSLILSLREEHESKELNLKAKYDQELRQSQIQAENELKERI 659
Query: 660 TKLKSEHEVQMKALQCQHEDECRKLHEELHLQKSKEDRQRALLQLQWKVMGNKPQEDQEV 719
T LKSEH+ Q+KA +CQ+ED+C+KL EEL LQ+ KE+RQRAL+QLQWKVM + P E+QEV
Sbjct: 660 TALKSEHDAQLKAFKCQYEDDCKKLQEELDLQRKKEERQRALVQLQWKVMSDNPPEEQEV 719
Query: 720 NSKQAYSISSSKMRDLGVGKRSKRAFARAENEE-KDPPFLNEAQTPVSQLLKKVENVNTG 778
NS + YSI SK LG KRS+ R++N+ +D PF+ +TPVS++LKK +NVN G
Sbjct: 720 NSNKNYSI--SKDSRLGGSKRSEHIRVRSDNDNVQDSPFVKAKETPVSKILKKAQNVNAG 777
Query: 779 SMISI--PKHHKKVTHHEYEVETSNGRTITKRRKTKSTVMFEDPGKRKKMNTTQAKTPRS 836
S++SI PKHH KVTH EYEVET+NGR +TKRRKT++T MFE+P +R++ T TP+S
Sbjct: 778 SVLSIPNPKHHSKVTHREYEVETNNGR-VTKRRKTRNTTMFEEP-QRRRTRATPKLTPQS 835
Query: 837 VAKGATGGANPHPSNIGDLFSEGSLNPYADDPYAFD 872
+AKG ++ +NIGDLFSEGSLNPYADDPYAFD
Sbjct: 836 IAKGTGMTSHARSANIGDLFSEGSLNPYADDPYAFD 871
>sp|P61430|SYCP2_ARATH Synaptonemal complex protein 2 OS=Arabidopsis thaliana GN=ZYP1B
PE=2 SV=1
Length = 856
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/875 (53%), Positives = 656/875 (74%), Gaps = 22/875 (2%)
Query: 1 MQKLGFPSVKSLDQFKSLSRSAKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKT 60
MQKLGFP++KS DQ +SL SAK++ FS+RP DS++SGSF+NLKLTAEKLVK+QA+++T
Sbjct: 1 MQKLGFPAMKSFDQLRSLPGSAKTYFFSTRPPQDSVSSGSFSNLKLTAEKLVKDQAAMRT 60
Query: 61 DLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQ 120
DLE+AN KLKKSMEHV LEEKLQ+A NENAKL+V+QKEDEKLW+GLESKFSSTKTL DQ
Sbjct: 61 DLELANCKLKKSMEHVYALEEKLQSAFNENAKLRVRQKEDEKLWRGLESKFSSTKTLCDQ 120
Query: 121 LTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKE 180
LTETLQHLASQVQDAEK+K FFE K ++S A++ QQM +SL+L +A+E IT R+KE
Sbjct: 121 LTETLQHLASQVQDAEKDKGFFETKFNTSSEAINSLNQQMRDMSLRLDAAKEEITSRDKE 180
Query: 181 LEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHID 240
LE+LK+E++ ++ Y+ E C T++L++K DA+I +LE T A+ +L+ E LNS++E++H++
Sbjct: 181 LEELKLEKQHKEMFYQTERCGTASLIEKKDAVITELETTAAERKLKIEKLNSQLEKLHLE 240
Query: 241 LQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDL 300
L +KEDE+ L+ +E LEKEK+++Q+S D +KLV S +E+K L+ VH A+L +L
Sbjct: 241 LTTKEDEVIHLVSIQEKLEKEKTNVQLSSDELFEKLVRSEQEVKKLDELVHYLIAELTEL 300
Query: 301 DKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLV 360
DK++LTF EKF +L+ Y++ F ++ +RDL+S +AQ +DQL + F +A+EK+AL+
Sbjct: 301 DKKNLTFKEKFDKLSGLYDTHFMLLRKDRDLASDRAQRSFDQLQGELFRVAAEKEALESS 360
Query: 361 NQELNSKIIKLQKTQESVKAQCLEECRL-AGEKISRLESEAEALISKKIETELLVSKLEK 419
EL+ KI++LQ +ES+ +Q L R A + I +LE EA+ L+ K ETE ++SKL++
Sbjct: 361 GNELSEKIVELQNDKESLISQ-LSGVRCSASQTIDKLEFEAKGLVLKNAETESVISKLKE 419
Query: 420 EIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEM 479
EID+LLE++R+ E+K ++ +K+SSLE+E+K+ EK A+ Q++ E+ L++E E ++
Sbjct: 420 EIDTLLESVRTSEDKKKELSIKLSSLEIESKDKYEKLQADAQRQVGELETLQKESESHQL 479
Query: 480 LVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDL 539
D + K+ QLQ I+ EK L+LQ N+ EK + QI +++ L AE++L+EAKKQYDL
Sbjct: 480 QADLLAKEVNQLQTIIEEKGHLILQCNENEKNINQQIIKDKELLATAETKLAEAKKQYDL 539
Query: 540 MLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEKADKTIGEMERKCDQK 599
MLESKQLELSRHLKE+SQRNDQ IN+IRRKY+VEK EI+N EK+K +K I E+ K D+
Sbjct: 540 MLESKQLELSRHLKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKIIKELSTKYDKG 599
Query: 600 LAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELREKT 659
L++CKEE+K+QL IQEEH++ +++I++E++ KE+NLKA++ EL+ ++QAENEL+E+
Sbjct: 600 LSDCKEESKRQLLTIQEEHSSRILNIREEHESKELNLKAKYDQELRQNQIQAENELKERI 659
Query: 660 TKLKSEHEVQMKALQCQHEDECRKLHEELHLQKSKEDRQRALLQLQWKVMGNKPQEDQEV 719
T LKSEH+ Q+KA +CQ+ED+C+KL EEL LQ+ KE+RQRAL+QLQWKVM + P E+QEV
Sbjct: 660 TALKSEHDAQLKAFKCQYEDDCKKLQEELDLQRKKEERQRALVQLQWKVMSDNPPEEQEV 719
Query: 720 NSKQAYSISSSKMRD--LGVGKRSKRAFARAENEEKDPPFLNEAQTPVSQLLKKVENVNT 777
NS + YS SS K+++ LG KRS+ + PF+ T VS +LK+ N
Sbjct: 720 NSNKDYSHSSVKVKESRLGGNKRSEHI--------TESPFVKAKVTSVSNILKEATN--- 768
Query: 778 GSMISIPKHHKKVTHHEYEVETSNGRTITKRRKTKSTVMFEDPGKRKKMNTTQAKTPRSV 837
PKHH KVTH EYEVET+NGR I KRRKT+ T MF++P +R T + TP +
Sbjct: 769 ------PKHHSKVTHREYEVETNNGR-IPKRRKTRQTTMFQEPQRRSTRLTPKLMTPTII 821
Query: 838 AKGATGGANPHPSNIGDLFSEGSLNPYADDPYAFD 872
AK +PH +NIGDLFSEGSLNPYADDPYAFD
Sbjct: 822 AKETAMADHPHSANIGDLFSEGSLNPYADDPYAFD 856
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 37.4 bits (85), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 559 NDQEINDIRRKYEVEKLEIVNMEKEKADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEH 618
ND+E+ D++RK +++ E+ M KE+ DK + E++ CD ++ E E+ + ++ ++EE+
Sbjct: 680 NDEEVCDLKRKLSLKESEM-KMMKEEHDKKLAELKDDCDVRIREMNEKNEDKINMLKEEY 738
Query: 619 AAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELREKTTKLKSEHEVQMKALQCQHE 678
+ +++++ + K LK + E K L+ E E K +K E+E ++ L Q+E
Sbjct: 739 EDKINTLKEQNEDKINTLKEQ--NEDKINTLKEEYE--HKINTMKEEYEHKINTLNEQNE 794
Query: 679 DECRKLHEE 687
+ L+E+
Sbjct: 795 HKINTLNEQ 803
>sp|Q90631|KTN1_CHICK Kinectin OS=Gallus gallus GN=KTN1 PE=1 SV=1
Length = 1364
Score = 33.9 bits (76), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 119/495 (24%), Positives = 226/495 (45%), Gaps = 75/495 (15%)
Query: 32 STDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQ--NAVNE 89
ST+ + S A L KL ++ A + +L NSKL+ +E+LQ NA
Sbjct: 430 STNQMESKQAAELN----KLRQDCARLVNELGEKNSKLQ---------QEELQKKNAEQA 476
Query: 90 NAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFED----K 145
A+LKV+Q+E E+ W+ ++ T +H A+Q QD + NK +D
Sbjct: 477 VAQLKVQQQEAERRWEEIQVYLRK---------RTAEHEAAQ-QDVQ-NKLVAKDNEIQS 525
Query: 146 ISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIER--EERD-------KLYR 196
+ S + + KQQ++ L+L +E+ +E ++ L+++ E+ D KL+
Sbjct: 526 LHSKLTDMVVSKQQLEQRMLQLIESEQKRASKEDSMQ-LRVQELVEQNDALNAQLQKLHS 584
Query: 197 DECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKE 256
+TS + ++L +A+ + + + + H +L SKE+E+K+L
Sbjct: 585 QMAAQTS-----ASVLAEELHKVIAEKDKQLKQMEDSLGNEHANLTSKEEELKVLQNMNL 639
Query: 257 NLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHV-------FAAQLVDLDKQSLTFME 309
+L+ E LQ + + + E++ ++ +H+ QL + Q++ E
Sbjct: 640 SLKSEIQKLQ----ALTNEQAAAAHELERMQKSIHIKDDKIRTLEEQLREELAQTVNTKE 695
Query: 310 KFYQLNSHYESCFQSVQMERDLSSQQAQNQY----DQLNDKFFSIASEKDALQLVNQELN 365
+F L ++ VQ + L S+ Q + D L + + D ++ V + L
Sbjct: 696 EFKILKDQNKTLQAEVQKLQALLSEPVQPTFEANKDLLEEMERGMRERDDKIKTVEELLE 755
Query: 366 SKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLL 425
+ +I++ +E +K E L E L+S + +S+++ + LV +L+K I
Sbjct: 756 AGLIQMANKEEELKVLRTENSSLRKE----LQS-LQIQLSEQVSFQSLVDELQKVIHEKD 810
Query: 426 ENLRSFENKLQDQLLKISSLEMENKE-NMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSI 484
++S E LQ ++LK++ NKE ++ +++ +EE+ N + E EK+ SI
Sbjct: 811 GKIKSVEELLQAEILKVA-----NKEKTVQALTQKIEALKEEVGNSQLEMEKQ----VSI 861
Query: 485 EKQFCQLQNILGEKE 499
Q +LQ +L KE
Sbjct: 862 TSQVKELQTLLKGKE 876
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.324
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,896,840
Number of Sequences: 539616
Number of extensions: 11860462
Number of successful extensions: 104051
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 5032
Number of HSP's that attempted gapping in prelim test: 64668
Number of HSP's gapped (non-prelim): 20827
length of query: 872
length of database: 191,569,459
effective HSP length: 126
effective length of query: 746
effective length of database: 123,577,843
effective search space: 92189070878
effective search space used: 92189070878
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)