Query 002878
Match_columns 872
No_of_seqs 455 out of 1719
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 12:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 1.1E-25 2.4E-30 283.3 87.2 590 88-720 1189-1831(1930)
2 KOG0161 Myosin class II heavy 100.0 1.7E-23 3.6E-28 263.8 87.4 624 38-706 963-1676(1930)
3 PF01576 Myosin_tail_1: Myosin 99.9 2.6E-27 5.7E-32 289.8 0.0 554 88-684 131-737 (859)
4 PF01576 Myosin_tail_1: Myosin 99.9 1E-24 2.2E-29 267.2 0.0 563 91-709 7-621 (859)
5 TIGR00606 rad50 rad50. This fa 99.9 1.2E-15 2.7E-20 197.1 82.1 468 56-551 415-921 (1311)
6 KOG0977 Nuclear envelope prote 99.7 4.1E-14 8.9E-19 160.4 41.5 318 255-634 34-374 (546)
7 TIGR02169 SMC_prok_A chromosom 99.7 1.3E-09 2.8E-14 141.4 86.2 7 791-797 1134-1140(1164)
8 PRK02224 chromosome segregatio 99.7 4E-10 8.7E-15 141.8 76.7 97 207-303 345-441 (880)
9 KOG4674 Uncharacterized conser 99.7 1.9E-08 4E-13 127.0 87.9 161 337-497 1159-1339(1822)
10 PF00038 Filament: Intermediat 99.7 5.4E-13 1.2E-17 147.5 42.3 265 338-628 4-281 (312)
11 COG1196 Smc Chromosome segrega 99.7 7.3E-09 1.6E-13 133.2 85.2 91 38-128 231-321 (1163)
12 TIGR02168 SMC_prok_B chromosom 99.7 2.3E-09 5E-14 139.1 81.5 8 765-772 1132-1139(1179)
13 TIGR02168 SMC_prok_B chromosom 99.7 3.2E-08 7E-13 128.5 88.3 28 754-781 1118-1145(1179)
14 KOG4674 Uncharacterized conser 99.7 8.2E-08 1.8E-12 121.4 89.8 220 45-264 653-883 (1822)
15 TIGR02169 SMC_prok_A chromosom 99.6 2.5E-07 5.4E-12 120.3 90.5 12 778-789 1127-1138(1164)
16 PF10174 Cast: RIM-binding pro 99.6 6.8E-08 1.5E-12 116.1 77.5 193 338-535 322-535 (775)
17 TIGR00606 rad50 rad50. This fa 99.6 7.4E-08 1.6E-12 125.5 83.2 191 35-241 467-669 (1311)
18 PF10174 Cast: RIM-binding pro 99.6 1E-07 2.2E-12 114.6 74.5 268 37-304 112-415 (775)
19 PRK02224 chromosome segregatio 99.6 4E-08 8.6E-13 123.9 74.8 42 754-801 818-861 (880)
20 COG1196 Smc Chromosome segrega 99.5 1.5E-06 3.3E-11 112.0 90.3 16 763-781 1107-1122(1163)
21 PRK03918 chromosome segregatio 99.5 3.4E-06 7.3E-11 106.6 79.0 20 752-771 817-836 (880)
22 PRK03918 chromosome segregatio 99.4 3.4E-06 7.4E-11 106.5 75.3 24 561-584 666-689 (880)
23 KOG0996 Structural maintenance 99.4 3.5E-06 7.6E-11 101.6 67.6 50 479-528 907-956 (1293)
24 PF12128 DUF3584: Protein of u 99.4 1.4E-05 3.1E-10 103.2 83.1 70 507-578 771-840 (1201)
25 PRK01156 chromosome segregatio 99.2 6.6E-05 1.4E-09 95.0 72.4 15 753-767 831-845 (895)
26 PF12128 DUF3584: Protein of u 99.1 0.00016 3.5E-09 93.7 83.5 191 388-584 604-794 (1201)
27 KOG0962 DNA repair protein RAD 99.1 0.00013 2.8E-09 90.6 78.0 389 127-537 494-908 (1294)
28 PF05483 SCP-1: Synaptonemal c 99.1 8.4E-05 1.8E-09 85.6 83.8 70 590-660 692-771 (786)
29 KOG0996 Structural maintenance 99.1 0.00016 3.4E-09 87.9 71.4 23 756-778 1174-1199(1293)
30 PRK01156 chromosome segregatio 99.0 0.00043 9.2E-09 87.8 84.1 23 350-372 421-443 (895)
31 KOG0933 Structural maintenance 99.0 0.00036 7.8E-09 83.5 69.0 30 272-301 477-506 (1174)
32 PF00038 Filament: Intermediat 98.9 1E-05 2.2E-10 89.7 38.5 131 264-426 8-138 (312)
33 KOG0964 Structural maintenance 98.9 0.00043 9.4E-09 82.5 66.8 90 352-441 671-763 (1200)
34 KOG0250 DNA repair protein RAD 98.9 0.00057 1.2E-08 83.2 73.9 218 55-300 209-427 (1074)
35 PF05483 SCP-1: Synaptonemal c 98.8 0.00063 1.4E-08 78.6 83.2 178 59-261 98-276 (786)
36 KOG0018 Structural maintenance 98.8 0.001 2.2E-08 80.6 63.5 57 120-176 293-349 (1141)
37 PF05701 WEMBL: Weak chloropla 98.8 0.00096 2.1E-08 78.9 60.6 55 117-178 35-89 (522)
38 KOG0977 Nuclear envelope prote 98.8 6.7E-05 1.5E-09 86.4 39.7 182 41-222 30-226 (546)
39 PF07888 CALCOCO1: Calcium bin 98.8 0.00063 1.4E-08 78.5 46.6 85 44-128 141-225 (546)
40 PRK04778 septation ring format 98.8 0.0016 3.5E-08 78.0 53.9 113 107-219 62-180 (569)
41 KOG0250 DNA repair protein RAD 98.8 0.0019 4.2E-08 78.8 71.1 48 40-87 208-255 (1074)
42 PF07888 CALCOCO1: Calcium bin 98.7 0.0011 2.5E-08 76.5 45.8 63 102-164 171-233 (546)
43 KOG0976 Rho/Rac1-interacting s 98.7 0.0018 3.8E-08 75.6 62.0 80 226-305 278-361 (1265)
44 PRK04863 mukB cell division pr 98.7 0.0051 1.1E-07 80.2 91.2 216 12-241 256-472 (1486)
45 KOG0933 Structural maintenance 98.7 0.0027 5.8E-08 76.4 69.5 63 388-450 766-832 (1174)
46 KOG0976 Rho/Rac1-interacting s 98.7 0.0022 4.8E-08 74.8 64.0 115 42-156 37-153 (1265)
47 PF05701 WEMBL: Weak chloropla 98.7 0.0028 6E-08 75.0 64.3 37 157-193 115-151 (522)
48 PRK04778 septation ring format 98.7 0.0018 3.8E-08 77.7 47.6 86 30-117 70-155 (569)
49 PF00261 Tropomyosin: Tropomyo 98.6 0.00011 2.4E-09 77.9 30.5 147 41-187 3-149 (237)
50 PF05557 MAD: Mitotic checkpoi 98.5 2.4E-07 5.2E-12 113.7 11.0 66 560-626 502-583 (722)
51 KOG4593 Mitotic checkpoint pro 98.5 0.0054 1.2E-07 71.6 66.0 24 272-295 297-320 (716)
52 KOG4643 Uncharacterized coiled 98.5 0.0095 2.1E-07 71.8 57.6 57 118-174 165-221 (1195)
53 KOG4673 Transcription factor T 98.5 0.0068 1.5E-07 70.0 68.1 33 585-625 909-941 (961)
54 KOG4593 Mitotic checkpoint pro 98.4 0.0085 1.8E-07 70.1 64.2 46 604-649 554-607 (716)
55 PF06160 EzrA: Septation ring 98.4 0.011 2.4E-07 70.7 55.5 96 107-202 58-159 (560)
56 PF00261 Tropomyosin: Tropomyo 98.4 0.00089 1.9E-08 71.1 31.9 84 89-172 30-113 (237)
57 KOG0994 Extracellular matrix g 98.4 0.016 3.4E-07 70.5 56.2 50 38-87 1163-1214(1758)
58 PRK04863 mukB cell division pr 98.4 0.029 6.2E-07 73.5 85.5 65 611-680 1036-1100(1486)
59 KOG0971 Microtubule-associated 98.4 0.015 3.2E-07 69.3 47.3 139 386-524 320-472 (1243)
60 KOG0994 Extracellular matrix g 98.4 0.018 3.8E-07 70.1 54.0 90 60-149 1201-1293(1758)
61 PF06160 EzrA: Septation ring 98.3 0.019 4E-07 68.7 49.7 36 459-494 452-487 (560)
62 PF09730 BicD: Microtubule-ass 98.3 0.021 4.7E-07 68.6 63.4 151 40-190 28-181 (717)
63 KOG4643 Uncharacterized coiled 98.1 0.048 1E-06 66.0 64.2 273 344-630 263-558 (1195)
64 KOG0978 E3 ubiquitin ligase in 98.1 0.05 1.1E-06 64.9 65.8 67 43-109 52-118 (698)
65 PF05557 MAD: Mitotic checkpoi 98.1 2.6E-06 5.7E-11 104.6 4.7 10 701-710 641-650 (722)
66 PF09728 Taxilin: Myosin-like 98.0 0.051 1.1E-06 59.9 40.0 72 453-524 225-296 (309)
67 PHA02562 46 endonuclease subun 97.9 0.023 5E-07 68.3 33.4 8 12-19 127-134 (562)
68 PF05622 HOOK: HOOK protein; 97.9 7E-06 1.5E-10 100.7 2.9 21 558-578 626-646 (713)
69 KOG0995 Centromere-associated 97.8 0.11 2.4E-06 60.0 42.4 34 71-104 256-289 (581)
70 KOG0995 Centromere-associated 97.8 0.11 2.4E-06 59.9 46.0 36 246-281 332-367 (581)
71 PF15070 GOLGA2L5: Putative go 97.8 0.15 3.2E-06 61.2 51.9 22 755-776 568-589 (617)
72 PHA02562 46 endonuclease subun 97.8 0.069 1.5E-06 64.2 36.0 46 250-295 231-276 (562)
73 PRK09039 hypothetical protein; 97.7 0.0024 5.1E-08 71.4 20.2 132 483-623 50-186 (343)
74 COG5185 HEC1 Protein involved 97.7 0.16 3.6E-06 56.8 37.1 64 92-155 292-355 (622)
75 KOG0964 Structural maintenance 97.6 0.33 7.1E-06 59.1 74.9 44 642-685 994-1037(1200)
76 KOG4673 Transcription factor T 97.6 0.28 6.1E-06 57.3 65.7 45 246-290 523-567 (961)
77 PRK11637 AmiB activator; Provi 97.6 0.055 1.2E-06 62.7 29.5 14 149-162 101-114 (428)
78 PF05622 HOOK: HOOK protein; 97.6 1.5E-05 3.2E-10 97.9 0.0 83 109-191 239-327 (713)
79 PF05667 DUF812: Protein of un 97.5 0.38 8.2E-06 57.6 35.0 36 226-261 448-483 (594)
80 KOG0963 Transcription factor/C 97.4 0.42 9.1E-06 55.8 46.7 84 350-433 187-270 (629)
81 PF14662 CCDC155: Coiled-coil 97.3 0.24 5.2E-06 49.8 25.2 42 407-448 69-110 (193)
82 PF05667 DUF812: Protein of un 97.3 0.74 1.6E-05 55.2 36.0 29 347-375 507-535 (594)
83 PF09730 BicD: Microtubule-ass 97.2 0.89 1.9E-05 55.2 59.0 90 91-187 30-119 (717)
84 COG0419 SbcC ATPase involved i 97.2 1.3 2.8E-05 56.5 74.9 50 754-803 848-901 (908)
85 KOG1029 Endocytic adaptor prot 97.2 0.83 1.8E-05 54.3 39.2 23 45-67 319-341 (1118)
86 COG4477 EzrA Negative regulato 97.2 0.72 1.6E-05 53.0 52.7 153 72-238 26-184 (570)
87 COG0419 SbcC ATPase involved i 97.2 1.4 3E-05 56.2 79.9 19 785-803 874-892 (908)
88 KOG1029 Endocytic adaptor prot 97.1 0.95 2.1E-05 53.8 37.5 29 272-300 435-463 (1118)
89 KOG0978 E3 ubiquitin ligase in 97.1 1 2.2E-05 54.1 68.5 73 77-149 51-123 (698)
90 PF09726 Macoilin: Transmembra 97.1 0.38 8.1E-06 58.7 30.1 27 351-377 635-661 (697)
91 PF09728 Taxilin: Myosin-like 97.1 0.66 1.4E-05 51.2 39.7 71 80-150 21-91 (309)
92 PF14915 CCDC144C: CCDC144C pr 97.0 0.72 1.6E-05 49.4 41.0 44 459-502 138-181 (305)
93 KOG0971 Microtubule-associated 96.9 1.6 3.6E-05 52.8 67.4 51 585-635 733-787 (1243)
94 PF05911 DUF869: Plant protein 96.9 1.9 4.2E-05 53.0 65.5 178 41-218 26-208 (769)
95 COG1579 Zn-ribbon protein, pos 96.8 0.57 1.2E-05 49.3 24.4 116 41-156 12-129 (239)
96 PF12718 Tropomyosin_1: Tropom 96.8 0.28 6E-06 47.8 20.7 57 134-190 77-133 (143)
97 PF12718 Tropomyosin_1: Tropom 96.8 0.3 6.5E-06 47.6 20.5 60 127-186 77-136 (143)
98 PF09726 Macoilin: Transmembra 96.7 2.1 4.6E-05 52.4 31.7 55 110-164 461-515 (697)
99 PF13514 AAA_27: AAA domain 96.7 3.8 8.2E-05 53.5 80.0 34 38-71 241-274 (1111)
100 KOG0963 Transcription factor/C 96.6 2.2 4.7E-05 50.1 44.9 132 420-551 190-329 (629)
101 COG1340 Uncharacterized archae 96.6 1.5 3.2E-05 47.4 32.8 47 237-283 177-223 (294)
102 PF05010 TACC: Transforming ac 96.5 1.2 2.6E-05 46.1 29.6 58 441-498 144-201 (207)
103 COG1340 Uncharacterized archae 96.5 1.6 3.5E-05 47.1 36.1 68 227-294 181-248 (294)
104 COG4477 EzrA Negative regulato 96.4 2.9 6.2E-05 48.3 50.2 156 19-176 58-222 (570)
105 PRK09039 hypothetical protein; 96.3 0.67 1.5E-05 52.0 22.6 51 141-191 43-93 (343)
106 PF15070 GOLGA2L5: Putative go 96.2 4.6 9.9E-05 48.8 55.6 42 58-99 20-61 (617)
107 PF05010 TACC: Transforming ac 96.1 2 4.4E-05 44.4 28.1 35 459-493 77-111 (207)
108 KOG0962 DNA repair protein RAD 96.1 7.2 0.00016 50.0 79.3 33 456-488 636-668 (1294)
109 PF06008 Laminin_I: Laminin Do 96.0 2.9 6.2E-05 45.2 31.2 88 42-129 27-114 (264)
110 COG5185 HEC1 Protein involved 96.0 3.7 8.1E-05 46.4 39.6 135 352-494 271-422 (622)
111 PF15619 Lebercilin: Ciliary p 96.0 2.3 5E-05 43.6 25.7 81 226-306 13-93 (194)
112 PF04849 HAP1_N: HAP1 N-termin 95.9 3.5 7.7E-05 44.9 24.9 63 216-278 204-266 (306)
113 PF13514 AAA_27: AAA domain 95.9 9.6 0.00021 49.9 69.1 40 37-76 344-383 (1111)
114 TIGR03185 DNA_S_dndD DNA sulfu 95.8 6.9 0.00015 48.1 36.7 25 271-295 432-456 (650)
115 KOG1937 Uncharacterized conser 95.7 5 0.00011 45.4 35.9 171 119-304 244-419 (521)
116 KOG0946 ER-Golgi vesicle-tethe 95.6 8 0.00017 46.8 28.6 20 354-373 913-932 (970)
117 KOG0612 Rho-associated, coiled 95.4 11 0.00024 47.7 65.7 30 121-150 499-528 (1317)
118 KOG1003 Actin filament-coating 95.4 3.5 7.6E-05 41.6 27.5 61 234-294 139-199 (205)
119 COG4942 Membrane-bound metallo 95.4 6.5 0.00014 44.7 30.9 46 245-290 58-103 (420)
120 PF10473 CENP-F_leu_zip: Leuci 95.4 2.8 6.2E-05 40.5 20.1 94 46-139 10-103 (140)
121 KOG0612 Rho-associated, coiled 95.3 12 0.00026 47.4 62.6 40 90-129 489-528 (1317)
122 KOG0018 Structural maintenance 95.3 12 0.00025 47.0 68.5 61 115-175 226-286 (1141)
123 COG3883 Uncharacterized protei 95.1 5.6 0.00012 42.5 27.0 62 231-292 37-98 (265)
124 PF15619 Lebercilin: Ciliary p 95.1 4.7 0.0001 41.4 26.2 24 56-79 15-38 (194)
125 PF10473 CENP-F_leu_zip: Leuci 94.9 4 8.6E-05 39.6 19.8 103 65-167 8-110 (140)
126 PF07111 HCR: Alpha helical co 94.8 12 0.00027 44.8 70.1 50 135-184 167-216 (739)
127 KOG1853 LIS1-interacting prote 94.7 6.6 0.00014 41.0 22.0 55 317-371 24-78 (333)
128 KOG1003 Actin filament-coating 94.6 5.7 0.00012 40.2 26.3 35 226-260 5-39 (205)
129 PF11559 ADIP: Afadin- and alp 94.6 1.7 3.7E-05 42.7 16.1 19 170-188 131-149 (151)
130 PF07111 HCR: Alpha helical co 94.6 14 0.0003 44.3 74.5 58 585-648 576-633 (739)
131 COG4372 Uncharacterized protei 94.5 9.5 0.00021 42.3 34.4 68 227-294 104-171 (499)
132 PF15450 DUF4631: Domain of un 94.5 12 0.00027 43.3 65.2 84 309-399 308-391 (531)
133 KOG4807 F-actin binding protei 94.5 9.8 0.00021 42.1 29.2 62 607-668 510-580 (593)
134 PF06008 Laminin_I: Laminin Do 94.4 9.1 0.0002 41.3 31.9 63 231-293 184-246 (264)
135 KOG0946 ER-Golgi vesicle-tethe 94.4 16 0.00036 44.3 34.7 66 124-189 651-716 (970)
136 PF14915 CCDC144C: CCDC144C pr 94.3 9.3 0.0002 41.3 41.3 19 173-191 7-25 (305)
137 PF14662 CCDC155: Coiled-coil 94.3 6.9 0.00015 39.6 27.6 72 156-231 93-164 (193)
138 PF15450 DUF4631: Domain of un 94.3 13 0.00029 43.0 62.1 42 103-144 14-55 (531)
139 PF08317 Spc7: Spc7 kinetochor 94.2 12 0.00025 41.9 28.0 53 540-593 210-264 (325)
140 COG4942 Membrane-bound metallo 94.1 14 0.0003 42.2 30.9 13 15-27 19-31 (420)
141 PF15066 CAGE1: Cancer-associa 93.9 15 0.00032 41.9 26.0 81 384-464 362-442 (527)
142 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.8 6.7 0.00015 37.7 19.3 123 42-167 6-128 (132)
143 PF09789 DUF2353: Uncharacteri 93.6 14 0.0003 40.8 22.6 122 385-520 73-199 (319)
144 PF10212 TTKRSYEDQ: Predicted 93.3 14 0.0003 43.1 21.9 42 29-70 278-319 (518)
145 PF04849 HAP1_N: HAP1 N-termin 93.3 15 0.00033 40.2 26.2 18 353-370 91-108 (306)
146 PF11559 ADIP: Afadin- and alp 93.2 9.2 0.0002 37.5 19.2 67 57-123 56-122 (151)
147 PF15397 DUF4618: Domain of un 93.1 14 0.0003 39.5 31.0 60 432-494 87-146 (258)
148 PF13851 GAS: Growth-arrest sp 93.1 12 0.00026 38.7 27.1 67 421-490 95-161 (201)
149 PF08317 Spc7: Spc7 kinetochor 93.1 18 0.00038 40.5 32.5 70 54-126 69-139 (325)
150 KOG1899 LAR transmembrane tyro 92.8 15 0.00033 43.2 21.0 111 29-143 94-208 (861)
151 PF08614 ATG16: Autophagy prot 92.8 0.68 1.5E-05 47.6 9.8 56 104-159 118-173 (194)
152 PF13870 DUF4201: Domain of un 92.4 11 0.00024 38.1 18.0 99 31-129 34-132 (177)
153 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.3 11 0.00024 36.2 19.8 13 476-488 109-121 (132)
154 KOG2196 Nuclear porin [Nuclear 92.0 18 0.00039 37.9 19.1 15 30-44 65-79 (254)
155 TIGR01005 eps_transp_fam exopo 91.9 34 0.00073 42.9 25.3 11 766-776 697-707 (754)
156 PF09789 DUF2353: Uncharacteri 91.9 23 0.00051 39.1 26.5 35 75-109 10-44 (319)
157 PF09755 DUF2046: Uncharacteri 91.7 23 0.0005 38.7 35.0 43 42-84 23-65 (310)
158 PF09787 Golgin_A5: Golgin sub 91.7 35 0.00076 40.6 37.1 26 40-65 110-135 (511)
159 PF09738 DUF2051: Double stran 91.6 4.5 9.8E-05 44.4 14.8 101 27-127 61-165 (302)
160 PF15066 CAGE1: Cancer-associa 91.5 30 0.00065 39.5 29.4 23 260-282 331-353 (527)
161 KOG0999 Microtubule-associated 91.3 34 0.00074 39.9 67.4 93 99-191 47-140 (772)
162 KOG0999 Microtubule-associated 91.3 35 0.00075 39.8 64.7 155 40-194 44-223 (772)
163 TIGR01843 type_I_hlyD type I s 91.0 34 0.00073 39.2 24.0 19 45-63 80-98 (423)
164 TIGR01843 type_I_hlyD type I s 90.8 35 0.00077 39.1 23.2 22 39-60 81-102 (423)
165 COG4372 Uncharacterized protei 90.6 32 0.0007 38.3 34.3 110 37-146 58-167 (499)
166 TIGR03007 pepcterm_ChnLen poly 90.4 37 0.0008 40.1 22.5 41 179-219 254-294 (498)
167 PF13851 GAS: Growth-arrest sp 90.3 24 0.00053 36.5 26.5 14 154-167 117-130 (201)
168 PF09755 DUF2046: Uncharacteri 90.2 32 0.0007 37.7 35.6 64 227-290 137-201 (310)
169 COG3883 Uncharacterized protei 90.1 30 0.00065 37.1 25.6 20 118-137 75-94 (265)
170 PLN02939 transferase, transfer 90.0 65 0.0014 40.9 31.2 34 389-422 255-288 (977)
171 KOG4360 Uncharacterized coiled 89.9 43 0.00094 38.8 21.1 80 456-535 217-296 (596)
172 TIGR01005 eps_transp_fam exopo 89.7 33 0.00072 42.9 22.2 29 159-187 238-266 (754)
173 PRK11281 hypothetical protein; 89.6 79 0.0017 41.2 39.4 58 133-190 124-181 (1113)
174 PF10267 Tmemb_cc2: Predicted 88.9 14 0.00031 42.0 16.2 104 45-157 211-318 (395)
175 PLN02939 transferase, transfer 88.8 80 0.0017 40.2 27.7 118 63-191 131-252 (977)
176 PRK10929 putative mechanosensi 88.4 93 0.002 40.5 43.0 53 639-691 372-430 (1109)
177 PF10168 Nup88: Nuclear pore c 88.4 68 0.0015 39.8 22.8 78 51-128 541-619 (717)
178 KOG2991 Splicing regulator [RN 88.3 37 0.0008 35.8 24.8 28 464-491 176-203 (330)
179 PF09731 Mitofilin: Mitochondr 88.3 64 0.0014 39.0 22.8 101 624-725 330-442 (582)
180 PF10146 zf-C4H2: Zinc finger- 87.9 22 0.00048 37.5 16.0 12 395-406 36-47 (230)
181 TIGR03007 pepcterm_ChnLen poly 87.9 64 0.0014 38.1 25.8 44 149-192 252-295 (498)
182 PF12325 TMF_TATA_bd: TATA ele 87.4 26 0.00057 33.1 15.5 55 32-86 9-63 (120)
183 KOG4302 Microtubule-associated 87.2 79 0.0017 38.4 38.6 41 390-430 102-142 (660)
184 PF04582 Reo_sigmaC: Reovirus 87.2 1.1 2.4E-05 49.1 5.9 130 34-170 23-152 (326)
185 KOG4809 Rab6 GTPase-interactin 86.9 69 0.0015 37.5 28.4 73 97-169 340-412 (654)
186 smart00787 Spc7 Spc7 kinetocho 86.6 57 0.0012 36.2 31.3 31 54-84 64-94 (312)
187 PF00769 ERM: Ezrin/radixin/mo 86.6 49 0.0011 35.4 18.3 77 49-125 8-84 (246)
188 KOG0249 LAR-interacting protei 86.5 81 0.0018 38.1 20.6 41 240-280 217-257 (916)
189 TIGR00634 recN DNA repair prot 86.5 82 0.0018 38.0 22.1 32 345-376 175-206 (563)
190 PF04012 PspA_IM30: PspA/IM30 86.3 46 0.001 34.7 24.8 12 563-574 167-178 (221)
191 KOG0804 Cytoplasmic Zn-finger 86.0 48 0.001 37.9 17.8 31 395-425 365-395 (493)
192 PF01442 Apolipoprotein: Apoli 85.6 42 0.0009 33.6 22.8 38 651-688 149-186 (202)
193 PF00769 ERM: Ezrin/radixin/mo 85.4 56 0.0012 34.9 17.8 29 48-76 14-42 (246)
194 PF15254 CCDC14: Coiled-coil d 85.4 1E+02 0.0022 37.8 22.2 30 388-417 431-460 (861)
195 PF10481 CENP-F_N: Cenp-F N-te 84.8 60 0.0013 34.7 17.8 75 116-190 60-134 (307)
196 KOG0804 Cytoplasmic Zn-finger 84.6 51 0.0011 37.6 17.1 32 96-127 369-400 (493)
197 PF10481 CENP-F_N: Cenp-F N-te 83.6 48 0.001 35.4 15.5 31 40-70 19-49 (307)
198 COG2433 Uncharacterized conser 83.6 23 0.00049 42.0 14.4 88 399-494 423-510 (652)
199 PF01442 Apolipoprotein: Apoli 83.1 53 0.0011 32.9 24.9 11 667-677 176-186 (202)
200 COG1382 GimC Prefoldin, chaper 83.1 26 0.00056 33.0 12.0 40 338-377 13-52 (119)
201 KOG1899 LAR transmembrane tyro 82.7 72 0.0016 37.9 17.7 33 505-537 172-204 (861)
202 PF04111 APG6: Autophagy prote 82.2 24 0.00052 39.2 13.8 21 165-185 113-133 (314)
203 PF12325 TMF_TATA_bd: TATA ele 82.2 46 0.00099 31.5 15.2 20 355-374 26-45 (120)
204 PF05384 DegS: Sensor protein 82.2 56 0.0012 32.5 21.7 35 254-288 28-62 (159)
205 PF04912 Dynamitin: Dynamitin 82.0 1E+02 0.0022 35.3 25.3 26 40-65 88-113 (388)
206 KOG4403 Cell surface glycoprot 81.8 1E+02 0.0022 35.1 19.0 108 179-295 309-418 (575)
207 PF10168 Nup88: Nuclear pore c 81.6 1.4E+02 0.0031 37.0 21.3 56 55-110 560-615 (717)
208 PF07889 DUF1664: Protein of u 81.2 43 0.00092 32.0 13.0 56 388-443 65-120 (126)
209 PF15397 DUF4618: Domain of un 80.9 85 0.0018 33.7 30.2 33 463-495 191-223 (258)
210 TIGR01000 bacteriocin_acc bact 80.8 1.1E+02 0.0024 35.8 19.5 24 64-87 169-192 (457)
211 KOG0979 Structural maintenance 80.7 1.7E+02 0.0037 37.0 66.0 158 35-193 170-332 (1072)
212 PF08581 Tup_N: Tup N-terminal 80.3 35 0.00077 29.7 11.1 67 542-609 7-75 (79)
213 PF11932 DUF3450: Protein of u 80.0 89 0.0019 33.4 18.1 58 385-442 50-107 (251)
214 PRK10869 recombination and rep 80.0 1.5E+02 0.0031 35.8 24.9 32 753-787 461-492 (553)
215 KOG3850 Predicted membrane pro 80.0 72 0.0016 35.7 15.8 34 38-71 259-292 (455)
216 KOG4360 Uncharacterized coiled 80.0 1.3E+02 0.0028 35.2 19.3 20 43-62 163-182 (596)
217 PRK11281 hypothetical protein; 79.8 2.1E+02 0.0045 37.5 42.7 52 389-440 126-177 (1113)
218 PF09787 Golgin_A5: Golgin sub 79.4 1.4E+02 0.0031 35.5 33.3 22 353-374 282-303 (511)
219 PF07058 Myosin_HC-like: Myosi 79.3 1E+02 0.0022 33.6 18.6 25 264-288 4-28 (351)
220 COG4026 Uncharacterized protei 79.2 43 0.00094 34.6 12.9 87 209-297 105-193 (290)
221 PF10146 zf-C4H2: Zinc finger- 78.8 89 0.0019 33.1 15.9 45 407-451 27-71 (230)
222 KOG2129 Uncharacterized conser 78.6 1.2E+02 0.0027 34.2 29.7 68 476-543 205-282 (552)
223 PF10498 IFT57: Intra-flagella 78.3 1.3E+02 0.0027 34.2 18.1 86 102-190 227-312 (359)
224 PF08261 Carcinustatin: Carcin 78.3 0.92 2E-05 21.6 0.4 6 867-872 2-7 (8)
225 PF04582 Reo_sigmaC: Reovirus 77.6 4.4 9.6E-05 44.5 5.9 18 73-90 27-44 (326)
226 PF11932 DUF3450: Protein of u 77.1 81 0.0018 33.7 15.5 13 208-220 150-162 (251)
227 PRK10884 SH3 domain-containing 76.8 39 0.00084 35.1 12.3 21 388-408 90-110 (206)
228 COG4026 Uncharacterized protei 76.7 29 0.00063 35.8 10.9 56 427-486 157-212 (290)
229 PF15290 Syntaphilin: Golgi-lo 76.1 78 0.0017 34.0 14.2 97 331-440 68-166 (305)
230 smart00787 Spc7 Spc7 kinetocho 75.8 1.4E+02 0.003 33.2 29.3 20 246-265 109-128 (312)
231 PF04012 PspA_IM30: PspA/IM30 75.2 1.1E+02 0.0024 31.9 23.1 104 337-440 36-140 (221)
232 PRK10884 SH3 domain-containing 75.2 49 0.0011 34.4 12.6 18 355-372 96-113 (206)
233 PF03915 AIP3: Actin interacti 75.2 1.1E+02 0.0023 35.6 16.4 32 136-167 238-269 (424)
234 COG3074 Uncharacterized protei 74.9 49 0.0011 27.7 10.9 68 40-107 5-72 (79)
235 PF07889 DUF1664: Protein of u 74.7 61 0.0013 30.9 12.0 83 509-592 38-122 (126)
236 PF10186 Atg14: UV radiation r 74.6 1.3E+02 0.0029 32.5 20.3 25 41-65 22-46 (302)
237 TIGR02338 gimC_beta prefoldin, 74.5 68 0.0015 29.7 12.3 25 350-374 22-46 (110)
238 PF10212 TTKRSYEDQ: Predicted 73.8 89 0.0019 36.7 15.3 22 243-264 306-327 (518)
239 PF14992 TMCO5: TMCO5 family 73.6 1.4E+02 0.003 32.4 17.9 82 415-497 14-95 (280)
240 PRK15422 septal ring assembly 72.2 65 0.0014 27.9 11.0 64 41-104 6-69 (79)
241 COG2433 Uncharacterized conser 71.7 72 0.0016 38.0 13.9 15 41-55 354-368 (652)
242 PF03148 Tektin: Tektin family 71.6 1.9E+02 0.0041 33.1 31.6 220 29-263 106-369 (384)
243 TIGR03017 EpsF chain length de 71.6 2E+02 0.0044 33.3 26.5 21 35-55 137-157 (444)
244 PF06785 UPF0242: Uncharacteri 71.2 1.7E+02 0.0037 32.3 19.6 14 314-327 281-294 (401)
245 PF06818 Fez1: Fez1; InterPro 70.1 1.4E+02 0.003 30.9 19.3 52 38-89 9-60 (202)
246 PF07106 TBPIP: Tat binding pr 69.1 48 0.001 33.1 10.8 62 234-295 74-137 (169)
247 PF06005 DUF904: Protein of un 68.9 74 0.0016 27.2 10.4 10 88-97 18-27 (72)
248 KOG1853 LIS1-interacting prote 68.6 1.6E+02 0.0035 31.1 21.6 35 339-373 53-87 (333)
249 PRK10698 phage shock protein P 67.3 1.7E+02 0.0037 30.8 25.6 101 340-440 40-141 (222)
250 PF10267 Tmemb_cc2: Predicted 67.1 1.3E+02 0.0029 34.4 14.6 97 37-136 210-318 (395)
251 KOG0249 LAR-interacting protei 67.1 3E+02 0.0065 33.6 21.6 41 261-301 217-257 (916)
252 cd00632 Prefoldin_beta Prefold 67.0 1E+02 0.0022 28.2 12.2 23 350-372 18-40 (105)
253 PF15290 Syntaphilin: Golgi-lo 66.2 1.7E+02 0.0038 31.5 14.1 54 141-194 93-146 (305)
254 PF14992 TMCO5: TMCO5 family 64.7 2.1E+02 0.0047 31.0 15.2 33 258-290 9-41 (280)
255 KOG2129 Uncharacterized conser 64.6 2.6E+02 0.0055 31.9 28.0 19 389-407 206-224 (552)
256 KOG0243 Kinesin-like protein [ 64.2 4.1E+02 0.0089 34.1 60.1 113 43-155 401-515 (1041)
257 PRK15422 septal ring assembly 64.2 92 0.002 27.0 9.5 20 68-87 12-31 (79)
258 PF13870 DUF4201: Domain of un 63.0 1.7E+02 0.0037 29.4 23.1 28 163-190 103-130 (177)
259 PRK10929 putative mechanosensi 62.6 4.7E+02 0.01 34.3 45.6 24 846-869 1025-1052(1109)
260 PRK10698 phage shock protein P 62.0 2.1E+02 0.0046 30.1 26.0 32 561-592 166-200 (222)
261 PF14073 Cep57_CLD: Centrosome 60.9 1.9E+02 0.0042 29.2 18.8 78 227-304 73-150 (178)
262 PF12777 MT: Microtubule-bindi 60.9 2.8E+02 0.0061 31.1 26.5 24 236-259 79-102 (344)
263 PF04912 Dynamitin: Dynamitin 60.8 3E+02 0.0066 31.5 23.5 25 105-129 90-114 (388)
264 PRK04406 hypothetical protein; 60.2 74 0.0016 27.5 8.6 44 127-170 8-51 (75)
265 PRK09343 prefoldin subunit bet 60.0 1.6E+02 0.0034 27.9 12.9 24 350-373 26-49 (121)
266 TIGR02977 phageshock_pspA phag 59.6 2.3E+02 0.005 29.6 23.2 30 345-374 45-74 (219)
267 PF01920 Prefoldin_2: Prefoldi 59.5 1.3E+02 0.0029 27.0 11.0 37 340-376 7-43 (106)
268 PF14197 Cep57_CLD_2: Centroso 59.2 92 0.002 26.4 8.8 15 111-125 7-21 (69)
269 PRK10246 exonuclease subunit S 58.8 5.4E+02 0.012 33.7 79.0 32 753-786 981-1015(1047)
270 COG3074 Uncharacterized protei 58.0 1.1E+02 0.0025 25.7 9.5 58 68-125 12-69 (79)
271 KOG0239 Kinesin (KAR3 subfamil 57.2 4.6E+02 0.01 32.4 19.0 20 136-155 254-273 (670)
272 PF12795 MscS_porin: Mechanose 57.1 2.6E+02 0.0057 29.6 23.7 54 141-194 82-135 (240)
273 PF14197 Cep57_CLD_2: Centroso 56.8 1.2E+02 0.0027 25.7 10.0 65 512-581 3-67 (69)
274 PF02994 Transposase_22: L1 tr 56.2 34 0.00073 39.0 7.6 30 128-157 142-171 (370)
275 PF04949 Transcrip_act: Transc 55.7 2.1E+02 0.0045 28.0 19.0 57 114-170 82-138 (159)
276 PF08580 KAR9: Yeast cortical 55.4 5E+02 0.011 32.2 35.9 134 238-393 129-292 (683)
277 KOG0239 Kinesin (KAR3 subfamil 54.8 5E+02 0.011 32.1 20.7 27 721-747 516-546 (670)
278 TIGR01000 bacteriocin_acc bact 54.4 4.1E+02 0.009 31.0 25.8 17 356-372 94-110 (457)
279 PF08581 Tup_N: Tup N-terminal 54.4 1.5E+02 0.0032 25.9 11.8 29 436-464 42-70 (79)
280 TIGR02338 gimC_beta prefoldin, 54.1 1.8E+02 0.0039 26.8 12.5 30 131-160 75-104 (110)
281 KOG0980 Actin-binding protein 54.0 5.5E+02 0.012 32.3 49.3 441 41-502 360-814 (980)
282 PF03915 AIP3: Actin interacti 53.7 4.1E+02 0.0089 30.8 17.7 77 391-470 206-294 (424)
283 PF08647 BRE1: BRE1 E3 ubiquit 53.6 1.7E+02 0.0037 26.4 12.0 59 544-603 29-92 (96)
284 PF08232 Striatin: Striatin fa 52.8 1.4E+02 0.0029 28.9 10.1 59 393-451 6-64 (134)
285 PF13874 Nup54: Nucleoporin co 52.7 94 0.002 30.2 9.1 98 35-132 26-123 (141)
286 KOG1937 Uncharacterized conser 52.3 4.3E+02 0.0093 30.6 37.0 19 352-370 469-487 (521)
287 cd07672 F-BAR_PSTPIP2 The F-BA 52.0 3.2E+02 0.007 29.1 24.6 31 257-287 162-192 (240)
288 PF08647 BRE1: BRE1 E3 ubiquit 51.7 1.8E+02 0.004 26.2 12.1 56 55-110 5-60 (96)
289 PRK03947 prefoldin subunit alp 51.6 2.3E+02 0.0049 27.2 13.7 26 131-156 102-127 (140)
290 KOG2077 JNK/SAPK-associated pr 51.6 3.6E+02 0.0078 32.0 14.5 79 349-431 298-376 (832)
291 PRK02119 hypothetical protein; 51.4 1E+02 0.0022 26.4 8.0 43 128-170 7-49 (73)
292 PRK09343 prefoldin subunit bet 51.1 2.2E+02 0.0047 26.9 13.4 31 133-163 81-111 (121)
293 PF06120 Phage_HK97_TLTM: Tail 50.9 3.8E+02 0.0083 29.6 20.1 77 39-124 34-110 (301)
294 PF06818 Fez1: Fez1; InterPro 49.4 3.2E+02 0.0069 28.3 23.6 31 459-489 74-104 (202)
295 PF07794 DUF1633: Protein of u 49.4 4.8E+02 0.01 30.4 14.8 33 246-278 691-723 (790)
296 KOG0982 Centrosomal protein Nu 48.8 4.7E+02 0.01 30.0 30.0 13 514-526 374-386 (502)
297 PF07106 TBPIP: Tat binding pr 48.7 2.9E+02 0.0062 27.5 12.4 57 19-76 53-109 (169)
298 PRK04325 hypothetical protein; 48.3 1.2E+02 0.0026 26.1 7.9 41 130-170 9-49 (74)
299 PF05384 DegS: Sensor protein 48.3 2.9E+02 0.0063 27.5 21.5 29 56-84 23-51 (159)
300 PRK10803 tol-pal system protei 48.2 67 0.0015 34.7 8.1 80 16-95 13-96 (263)
301 TIGR03752 conj_TIGR03752 integ 47.7 1.7E+02 0.0037 34.1 11.4 64 553-617 59-124 (472)
302 PRK08476 F0F1 ATP synthase sub 47.5 2.7E+02 0.0059 26.9 13.3 37 641-677 98-134 (141)
303 COG3206 GumC Uncharacterized p 47.3 5.2E+02 0.011 30.2 22.9 77 224-300 291-368 (458)
304 PF04102 SlyX: SlyX; InterPro 47.0 1E+02 0.0022 26.0 7.3 26 134-159 8-33 (69)
305 PF04102 SlyX: SlyX; InterPro 46.4 74 0.0016 26.9 6.4 22 107-128 9-30 (69)
306 PRK13428 F0F1 ATP synthase sub 46.3 4.3E+02 0.0094 30.9 14.9 61 591-651 53-113 (445)
307 PRK00295 hypothetical protein; 45.9 1.3E+02 0.0029 25.3 7.8 40 131-170 6-45 (68)
308 PF06785 UPF0242: Uncharacteri 45.7 4.6E+02 0.01 29.1 21.3 123 352-492 99-221 (401)
309 PF10205 KLRAQ: Predicted coil 45.7 2.4E+02 0.0053 25.8 11.1 64 355-422 8-71 (102)
310 PF05700 BCAS2: Breast carcino 45.5 2.6E+02 0.0057 29.3 11.8 65 354-425 145-209 (221)
311 PF14282 FlxA: FlxA-like prote 45.5 2E+02 0.0042 26.6 9.5 58 38-98 18-75 (106)
312 PF15294 Leu_zip: Leucine zipp 45.3 4.4E+02 0.0095 28.7 19.8 7 34-40 28-34 (278)
313 PRK02793 phi X174 lysis protei 45.3 1.3E+02 0.0028 25.7 7.7 40 130-169 8-47 (72)
314 PF02403 Seryl_tRNA_N: Seryl-t 45.2 2.4E+02 0.0051 25.7 10.2 28 117-144 68-95 (108)
315 cd09238 V_Alix_like_1 Protein- 44.6 5E+02 0.011 29.1 21.8 58 13-79 110-167 (339)
316 KOG4807 F-actin binding protei 44.5 5.1E+02 0.011 29.3 28.5 28 36-63 28-55 (593)
317 KOG0240 Kinesin (SMY1 subfamil 44.3 6.3E+02 0.014 30.2 22.9 7 35-41 321-327 (607)
318 PRK00846 hypothetical protein; 44.2 2.2E+02 0.0047 24.8 8.8 40 128-167 11-50 (77)
319 TIGR02231 conserved hypothetic 44.2 2.6E+02 0.0057 33.3 13.1 32 56-87 74-105 (525)
320 PRK10361 DNA recombination pro 44.0 6.1E+02 0.013 29.9 23.6 55 140-194 63-117 (475)
321 PRK00736 hypothetical protein; 43.9 1.3E+02 0.0029 25.3 7.5 40 131-170 6-45 (68)
322 PRK03947 prefoldin subunit alp 43.5 3E+02 0.0066 26.4 13.9 35 131-165 95-129 (140)
323 PRK00846 hypothetical protein; 43.5 1.6E+02 0.0034 25.6 7.9 26 103-128 14-39 (77)
324 PF10224 DUF2205: Predicted co 43.4 1.3E+02 0.0029 26.3 7.5 59 28-86 3-63 (80)
325 PRK02119 hypothetical protein; 42.4 1.3E+02 0.0028 25.8 7.3 26 107-132 14-39 (73)
326 TIGR01010 BexC_CtrB_KpsE polys 42.3 5.4E+02 0.012 28.9 17.6 17 116-132 242-258 (362)
327 KOG1760 Molecular chaperone Pr 42.3 3E+02 0.0065 26.1 9.9 31 345-375 23-53 (131)
328 PF13863 DUF4200: Domain of un 41.7 3E+02 0.0065 25.7 15.8 9 304-312 110-118 (126)
329 TIGR03752 conj_TIGR03752 integ 41.6 2.3E+02 0.005 33.1 11.2 18 62-79 61-78 (472)
330 PF01519 DUF16: Protein of unk 41.3 1.8E+02 0.0038 26.7 8.1 11 35-45 22-32 (102)
331 PF05377 FlaC_arch: Flagella a 41.2 1.7E+02 0.0036 23.8 7.1 42 252-294 6-47 (55)
332 PF15035 Rootletin: Ciliary ro 41.0 4.1E+02 0.0088 27.1 18.2 30 161-190 84-113 (182)
333 PRK00295 hypothetical protein; 40.6 1.5E+02 0.0033 25.0 7.3 31 106-136 9-39 (68)
334 PRK02793 phi X174 lysis protei 40.3 1.4E+02 0.0031 25.5 7.2 30 106-135 12-41 (72)
335 PHA03011 hypothetical protein; 40.1 2.5E+02 0.0054 25.5 8.6 63 36-98 54-116 (120)
336 TIGR02680 conserved hypothetic 39.9 1.1E+03 0.024 31.8 76.7 14 5-21 175-188 (1353)
337 PRK04325 hypothetical protein; 39.7 2E+02 0.0043 24.7 8.0 37 388-424 13-49 (74)
338 KOG0243 Kinesin-like protein [ 39.3 9.7E+02 0.021 31.0 57.7 114 57-170 445-558 (1041)
339 KOG4809 Rab6 GTPase-interactin 39.2 7.3E+02 0.016 29.5 42.9 24 47-70 121-144 (654)
340 COG1730 GIM5 Predicted prefold 39.0 3.9E+02 0.0083 26.2 12.3 29 206-234 89-117 (145)
341 PF06810 Phage_GP20: Phage min 38.3 2.4E+02 0.0053 27.9 9.6 43 246-288 27-72 (155)
342 PF02183 HALZ: Homeobox associ 37.9 1.4E+02 0.0031 23.0 6.1 22 385-406 6-27 (45)
343 PF08606 Prp19: Prp19/Pso4-lik 37.9 2.6E+02 0.0056 23.9 9.0 60 209-268 6-65 (70)
344 TIGR00293 prefoldin, archaeal 37.8 1.9E+02 0.0042 27.1 8.6 35 131-165 87-121 (126)
345 PF04728 LPP: Lipoprotein leuc 37.7 2.2E+02 0.0048 23.1 8.0 45 41-85 5-49 (56)
346 PF05546 She9_MDM33: She9 / Md 37.7 2.6E+02 0.0057 29.0 9.8 114 14-127 6-131 (207)
347 PF06705 SF-assemblin: SF-asse 37.7 5.3E+02 0.011 27.4 35.5 15 177-191 126-140 (247)
348 PRK15396 murein lipoprotein; P 37.5 2.2E+02 0.0049 24.8 7.9 49 39-87 25-73 (78)
349 PF05911 DUF869: Plant protein 37.4 9.4E+02 0.02 30.3 63.2 47 145-191 121-167 (769)
350 PF12795 MscS_porin: Mechanose 37.3 5.2E+02 0.011 27.3 23.6 48 142-189 90-137 (240)
351 PF05377 FlaC_arch: Flagella a 37.3 97 0.0021 25.1 5.2 26 103-128 8-33 (55)
352 KOG2264 Exostosin EXT1L [Signa 37.2 2.1E+02 0.0045 33.8 9.8 32 714-745 606-642 (907)
353 PRK06342 transcription elongat 37.2 1.1E+02 0.0024 30.5 7.0 31 27-57 19-52 (160)
354 PF05266 DUF724: Protein of un 37.0 4.8E+02 0.01 26.8 16.2 76 116-191 103-178 (190)
355 KOG1962 B-cell receptor-associ 36.9 5.2E+02 0.011 27.1 14.9 10 360-369 135-144 (216)
356 PF10205 KLRAQ: Predicted coil 36.6 3.4E+02 0.0074 24.9 10.9 66 40-105 6-71 (102)
357 KOG1129 TPR repeat-containing 36.5 34 0.00074 37.7 3.5 86 774-868 77-178 (478)
358 PF05615 THOC7: Tho complex su 36.4 3.9E+02 0.0085 25.6 12.1 63 37-99 44-106 (139)
359 PF13747 DUF4164: Domain of un 36.1 3.2E+02 0.0069 24.4 11.6 47 128-174 37-83 (89)
360 COG1842 PspA Phage shock prote 36.1 5.4E+02 0.012 27.1 25.9 41 391-431 31-71 (225)
361 KOG0972 Huntingtin interacting 35.7 6.1E+02 0.013 27.6 13.7 48 403-450 239-290 (384)
362 PRK10803 tol-pal system protei 35.6 1.8E+02 0.004 31.4 9.0 46 270-315 57-102 (263)
363 PRK06569 F0F1 ATP synthase sub 35.3 4.6E+02 0.0099 26.0 15.1 17 661-677 121-137 (155)
364 PF12761 End3: Actin cytoskele 35.1 2.7E+02 0.006 28.6 9.4 26 236-261 164-189 (195)
365 cd00632 Prefoldin_beta Prefold 35.1 3.5E+02 0.0076 24.6 13.8 12 477-488 82-93 (105)
366 TIGR02231 conserved hypothetic 35.0 3.4E+02 0.0073 32.4 12.0 33 37-69 69-101 (525)
367 PF14282 FlxA: FlxA-like prote 35.0 3.1E+02 0.0068 25.2 9.2 47 53-99 19-69 (106)
368 PF14073 Cep57_CLD: Centrosome 34.3 5.1E+02 0.011 26.3 22.9 44 116-159 50-93 (178)
369 smart00806 AIP3 Actin interact 34.2 7.9E+02 0.017 28.4 20.8 112 354-470 175-298 (426)
370 PF10805 DUF2730: Protein of u 33.9 3.2E+02 0.0069 25.2 9.0 14 73-86 48-61 (106)
371 COG3206 GumC Uncharacterized p 33.6 8.3E+02 0.018 28.5 24.5 48 146-193 287-334 (458)
372 PRK00736 hypothetical protein; 33.2 2.9E+02 0.0063 23.3 7.9 33 390-422 11-43 (68)
373 COG1382 GimC Prefoldin, chaper 33.2 4.3E+02 0.0092 25.0 13.1 34 124-157 14-47 (119)
374 KOG4438 Centromere-associated 33.0 8.1E+02 0.018 28.2 37.9 21 658-678 404-424 (446)
375 KOG0993 Rab5 GTPase effector R 32.8 8E+02 0.017 28.1 38.2 62 390-451 298-363 (542)
376 PF07989 Microtub_assoc: Micro 32.7 3.3E+02 0.0071 23.5 8.9 23 347-369 9-31 (75)
377 KOG4603 TBP-1 interacting prot 32.6 5.3E+02 0.011 25.9 13.0 70 88-157 79-150 (201)
378 PRK00409 recombination and DNA 32.2 7.5E+02 0.016 31.2 14.8 31 2-34 7-39 (782)
379 TIGR02977 phageshock_pspA phag 32.0 6.1E+02 0.013 26.5 26.7 8 585-592 193-200 (219)
380 TIGR01069 mutS2 MutS2 family p 31.9 7.4E+02 0.016 31.3 14.6 42 585-626 548-589 (771)
381 PF11629 Mst1_SARAH: C termina 31.2 1.6E+02 0.0036 23.1 5.4 30 653-682 11-40 (49)
382 PF08826 DMPK_coil: DMPK coile 30.7 3.1E+02 0.0068 22.7 9.3 40 257-296 15-54 (61)
383 PF05700 BCAS2: Breast carcino 30.5 6.5E+02 0.014 26.3 18.1 26 37-62 95-120 (221)
384 smart00806 AIP3 Actin interact 30.3 9.1E+02 0.02 28.0 21.8 114 45-167 154-273 (426)
385 KOG4796 RNA polymerase II elon 30.3 4.4E+02 0.0096 31.2 11.0 99 35-137 497-595 (604)
386 KOG2264 Exostosin EXT1L [Signa 30.3 3.7E+02 0.0079 31.9 10.3 47 145-191 94-140 (907)
387 PF15254 CCDC14: Coiled-coil d 29.9 1.2E+03 0.026 29.2 27.3 23 227-249 389-411 (861)
388 KOG4637 Adaptor for phosphoino 29.7 8.6E+02 0.019 27.5 18.0 51 38-88 138-188 (464)
389 PF11365 DUF3166: Protein of u 29.7 1.3E+02 0.0028 27.3 5.4 50 11-63 37-86 (96)
390 PF03962 Mnd1: Mnd1 family; I 29.5 6.3E+02 0.014 25.8 14.4 43 37-79 60-102 (188)
391 cd07671 F-BAR_PSTPIP1 The F-BA 29.4 7.2E+02 0.016 26.5 25.8 56 254-309 158-213 (242)
392 PF15035 Rootletin: Ciliary ro 29.0 6.3E+02 0.014 25.7 19.6 34 142-175 86-119 (182)
393 PF15294 Leu_zip: Leucine zipp 28.7 8E+02 0.017 26.8 25.8 45 223-267 130-174 (278)
394 PRK11519 tyrosine kinase; Prov 28.5 1.2E+03 0.027 28.9 18.2 21 245-265 273-293 (719)
395 PF09731 Mitofilin: Mitochondr 28.3 1.1E+03 0.024 28.4 23.4 28 510-537 247-274 (582)
396 PF06156 DUF972: Protein of un 28.0 3.6E+02 0.0078 25.0 8.2 11 428-438 24-34 (107)
397 COG1730 GIM5 Predicted prefold 28.0 5.9E+02 0.013 25.0 12.9 12 393-404 96-107 (145)
398 PF05335 DUF745: Protein of un 27.8 6.8E+02 0.015 25.7 16.1 12 30-41 11-22 (188)
399 cd00890 Prefoldin Prefoldin is 27.6 3.5E+02 0.0076 25.2 8.6 102 69-170 1-127 (129)
400 PF08172 CASP_C: CASP C termin 27.5 2.7E+02 0.0059 29.8 8.5 50 38-87 85-134 (248)
401 KOG0175 20S proteasome, regula 27.4 30 0.00065 36.5 1.2 21 852-872 193-217 (285)
402 PF04899 MbeD_MobD: MbeD/MobD 27.2 4E+02 0.0086 22.8 8.5 21 352-372 42-62 (70)
403 PF04728 LPP: Lipoprotein leuc 26.9 3.5E+02 0.0076 22.1 8.0 23 106-128 7-29 (56)
404 KOG4603 TBP-1 interacting prot 26.9 6.6E+02 0.014 25.2 14.6 56 240-295 87-144 (201)
405 PF05565 Sipho_Gp157: Siphovir 26.8 5.8E+02 0.013 25.3 10.3 33 463-495 52-84 (162)
406 PF00430 ATP-synt_B: ATP synth 26.7 5.3E+02 0.011 24.0 9.8 80 594-673 43-122 (132)
407 KOG4677 Golgi integral membran 26.6 1.1E+03 0.023 27.5 27.0 19 455-473 398-416 (554)
408 PF06810 Phage_GP20: Phage min 26.4 6.4E+02 0.014 24.9 10.9 31 44-74 18-48 (155)
409 PRK14475 F0F1 ATP synthase sub 25.7 6.7E+02 0.014 24.9 14.8 96 577-673 35-133 (167)
410 PF00901 Orbi_VP5: Orbivirus o 25.7 1.1E+03 0.025 27.6 17.4 29 28-57 74-102 (508)
411 PF05008 V-SNARE: Vesicle tran 25.6 3.4E+02 0.0075 23.0 7.4 17 171-187 60-76 (79)
412 COG0497 RecN ATPase involved i 25.2 1.3E+03 0.027 27.9 26.1 246 281-543 117-378 (557)
413 KOG4460 Nuclear pore complex, 25.1 1.2E+03 0.027 27.8 19.1 47 76-122 590-636 (741)
414 PRK09973 putative outer membra 25.0 4.5E+02 0.0098 23.3 7.8 48 40-87 25-72 (85)
415 PF03999 MAP65_ASE1: Microtubu 24.9 2.1E+02 0.0046 34.9 8.1 18 357-374 328-345 (619)
416 KOG1962 B-cell receptor-associ 24.9 8.2E+02 0.018 25.7 13.5 17 147-163 175-191 (216)
417 PF05064 Nsp1_C: Nsp1-like C-t 24.8 1.5E+02 0.0033 27.7 5.3 76 49-124 32-107 (116)
418 KOG0979 Structural maintenance 24.7 1.6E+03 0.035 29.0 60.6 27 770-801 987-1013(1072)
419 KOG2991 Splicing regulator [RN 24.4 9E+02 0.019 25.9 27.8 53 77-129 104-156 (330)
420 KOG4438 Centromere-associated 24.3 1.1E+03 0.025 27.1 41.6 42 453-494 243-284 (446)
421 KOG1103 Predicted coiled-coil 24.2 1E+03 0.022 26.5 22.2 43 456-498 243-285 (561)
422 PF11172 DUF2959: Protein of u 24.1 8.1E+02 0.018 25.3 22.0 11 388-398 148-158 (201)
423 PF06428 Sec2p: GDP/GTP exchan 24.0 5.3E+02 0.012 23.6 8.4 27 135-161 13-40 (100)
424 PF05064 Nsp1_C: Nsp1-like C-t 24.0 58 0.0012 30.6 2.3 75 101-175 21-95 (116)
425 PRK06231 F0F1 ATP synthase sub 23.8 8.2E+02 0.018 25.3 16.6 28 598-625 133-160 (205)
426 CHL00019 atpF ATP synthase CF0 23.7 7.6E+02 0.017 24.9 16.5 40 590-629 101-140 (184)
427 PF03999 MAP65_ASE1: Microtubu 23.6 4.8E+02 0.011 31.9 10.8 13 437-449 388-400 (619)
428 PF05529 Bap31: B-cell recepto 23.5 5.7E+02 0.012 25.9 9.8 31 270-300 157-187 (192)
429 PF06637 PV-1: PV-1 protein (P 23.5 1.1E+03 0.024 26.7 38.8 23 243-265 213-235 (442)
430 PF07798 DUF1640: Protein of u 23.5 7.6E+02 0.017 24.8 20.0 25 666-690 125-149 (177)
431 PF10046 BLOC1_2: Biogenesis o 23.3 5.6E+02 0.012 23.2 11.7 85 72-156 12-99 (99)
432 PRK13169 DNA replication intia 23.3 5E+02 0.011 24.2 8.2 33 416-448 12-44 (110)
433 PF06428 Sec2p: GDP/GTP exchan 23.3 1.6E+02 0.0035 26.9 4.9 19 388-406 12-30 (100)
434 KOG3990 Uncharacterized conser 23.0 4.7E+02 0.01 27.8 8.7 7 30-36 218-224 (305)
435 PF14988 DUF4515: Domain of un 22.9 8.7E+02 0.019 25.2 26.6 26 524-549 32-57 (206)
436 PF06120 Phage_HK97_TLTM: Tail 22.7 1.1E+03 0.023 26.2 20.0 16 141-156 52-67 (301)
437 PRK00409 recombination and DNA 22.7 1.6E+03 0.035 28.3 16.7 42 585-626 553-594 (782)
438 PF05529 Bap31: B-cell recepto 22.7 6.7E+02 0.015 25.4 10.2 25 466-490 162-186 (192)
439 COG1842 PspA Phage shock prote 22.7 9.2E+02 0.02 25.4 25.7 96 341-436 41-137 (225)
440 TIGR01010 BexC_CtrB_KpsE polys 22.6 1.1E+03 0.024 26.4 18.7 28 139-166 172-199 (362)
441 PF12037 DUF3523: Domain of un 22.5 1E+03 0.022 25.9 17.8 80 611-694 97-180 (276)
442 PF11501 Nsp1: Non structural 22.4 17 0.00038 32.3 -1.3 55 814-871 38-106 (115)
443 KOG0288 WD40 repeat protein Ti 22.2 1.2E+03 0.027 26.7 16.2 6 706-711 202-207 (459)
444 KOG0993 Rab5 GTPase effector R 22.1 1.2E+03 0.027 26.7 42.3 107 177-283 68-185 (542)
445 PF12761 End3: Actin cytoskele 22.0 6.4E+02 0.014 26.0 9.4 22 354-375 98-119 (195)
446 PRK14472 F0F1 ATP synthase sub 22.0 8E+02 0.017 24.5 16.5 41 598-638 103-143 (175)
447 TIGR01069 mutS2 MutS2 family p 22.0 1.3E+03 0.029 29.0 14.3 31 2-34 7-39 (771)
448 PF04065 Not3: Not1 N-terminal 21.8 9.8E+02 0.021 25.4 19.7 28 416-443 5-32 (233)
449 PF15188 CCDC-167: Coiled-coil 21.7 3.6E+02 0.0079 23.9 6.6 33 254-286 37-69 (85)
450 smart00502 BBC B-Box C-termina 21.7 6.1E+02 0.013 23.0 15.6 18 477-494 84-101 (127)
451 COG4985 ABC-type phosphate tra 21.6 9.4E+02 0.02 25.4 10.5 32 553-584 213-244 (289)
452 PRK15178 Vi polysaccharide exp 21.6 1.3E+03 0.029 26.9 14.9 51 103-153 287-337 (434)
453 PF09766 FimP: Fms-interacting 21.5 9.7E+02 0.021 27.1 11.9 128 544-675 3-143 (355)
454 KOG2751 Beclin-like protein [S 21.0 1.3E+03 0.029 26.6 14.7 45 120-164 187-231 (447)
455 PF11570 E2R135: Coiled-coil r 20.9 7.5E+02 0.016 23.7 15.1 47 144-190 8-54 (136)
456 PF14818 DUF4482: Domain of un 20.9 1.5E+02 0.0033 28.8 4.5 28 654-681 17-47 (141)
457 PRK13729 conjugal transfer pil 20.8 3.8E+02 0.0082 31.4 8.4 41 141-181 80-120 (475)
458 PRK13454 F0F1 ATP synthase sub 20.6 8.8E+02 0.019 24.4 16.4 44 593-636 111-154 (181)
459 PF10211 Ax_dynein_light: Axon 20.5 9.2E+02 0.02 24.6 14.3 104 311-417 86-189 (189)
460 PRK06231 F0F1 ATP synthase sub 20.5 9.5E+02 0.021 24.8 15.1 33 595-627 104-136 (205)
461 PF10458 Val_tRNA-synt_C: Valy 20.2 5.1E+02 0.011 21.5 7.7 23 420-442 5-27 (66)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-25 Score=283.31 Aligned_cols=590 Identities=21% Similarity=0.225 Sum_probs=456.8
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 88 NENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 88 ~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
...+.+...+..+......++...+.+..+++++..++..+.....+++..++.++..+.+++.+++++++++.++..+.
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~ 1268 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKR 1268 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888899999999999999999999999999999999999999999999999999999887766665
Q ss_pred --------------HhHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-
Q 002878 168 --------------GSAEEII-------TKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRL- 225 (872)
Q Consensus 168 --------------ee~e~~l-------~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~- 225 (872)
++++..+ ..+..+|+.+++++++.++.......++..+.++++.+.++++++.+ .+.
T Consensus 1269 ~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e-~~~~ 1347 (1930)
T KOG0161|consen 1269 SRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQE-AKNE 1347 (1930)
T ss_pred HHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3333332 44889999999999999999999999999999999999999999984 555
Q ss_pred ---HHHHHhhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhhcH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 226 ---ETESLNSKVEEMHIDLQSKEDE-IKLLMITKENLEKEKSDLQMSR-------DSFEKKLVTSIREIKNLEGFVHVFA 294 (872)
Q Consensus 226 ---el~~l~~el~~~~~~L~~~~e~-l~~l~~~~~~lEKek~~Lq~e~-------d~~~~~l~~le~e~~~l~~~l~~~~ 294 (872)
.+..++.++.+|...+.....+ .+.+...+..+......++..+ +.+......+..++.++..++....
T Consensus 1348 l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~ 1427 (1930)
T KOG0161|consen 1348 LERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSR 1427 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4666799999998866554443 3334444444444444443333 4444445556667788888888888
Q ss_pred HHHhHhhHhhHHHHHHHHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 295 AQLVDLDKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 295 ~~l~eldkk~~~f~~k~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~ 374 (872)
..+..|++++. +|+++...|......++.+++....+.+.. ..+...+...+.++...++.+.+.
T Consensus 1428 ~~~~~le~k~k----~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~-----------~tel~kl~~~lee~~e~~e~l~re 1492 (1930)
T KOG0161|consen 1428 AAVAALEKKQK----RFEKLLAEWKKKLEKLQAELDAAQRELRQL-----------STELQKLKNALEELLEQLEELRRE 1492 (1930)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887 888889999999998888888776665431 122333444444444444444443
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 002878 375 QESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENME 454 (872)
Q Consensus 375 ~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~ 454 (872)
+ ..+..++..+...+.++...+.+++.....++.++..+...+.+++..++..++...+++..+...+.
T Consensus 1493 n-----------k~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~ 1561 (1930)
T KOG0161|consen 1493 N-----------KNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRS 1561 (1930)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3 23334455555555666666666666666666667777777777888777777777778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 455 KFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAK 534 (872)
Q Consensus 455 ~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae 534 (872)
+++..+....++++..++. ++..+++++..+..-.+. ....+.. +++++++|.++..+++.+++...++.
T Consensus 1562 e~er~l~ek~Ee~E~~rk~---~~~~i~~~q~~Le~E~r~---k~e~~r~----KKkle~di~elE~~ld~ank~~~d~~ 1631 (1930)
T KOG0161|consen 1562 EIERRLQEKDEEIEELRKN---LQRQLESLQAELEAETRS---KSEALRS----KKKLEGDINELEIQLDHANKANEDAQ 1631 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHH---HHHHHHHHHHhhhHHHHH---HHHHHhh----hhhhhcchHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999 888888888866532222 3333333 55899999999999999999999988
Q ss_pred HH---HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHhHHH----
Q 002878 535 KQ---YDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK---------ADKTIGEMERKCDQ---- 598 (872)
Q Consensus 535 ~~---y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~---------le~~l~e~e~r~~~---- 598 (872)
+. |+..+.+++.+++.....-. ++...+..+.+++..+++++..|.... ++.++.++.++.+.
T Consensus 1632 K~lkk~q~~~k~lq~~~e~~~~~~~-e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1632 KQLKKLQAQLKELQRELEDAQRARE-ELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 87 67888888888885433333 444888899999999999998888776 66677777666443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002878 599 --KLAECKEEAKQQLKRIQEEHAAIVI--SIQQEYDKKEMNLKAEHIGELKCAELQAENELREKTTKLKSEHEVQMKALQ 674 (872)
Q Consensus 599 --~L~~~k~e~e~~l~~~~eE~e~~~~--~~~~~~~~k~~~~~a~~~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~lq 674 (872)
.+...+++++..|..+++++++... +...++.+|+.++++++.+||..+| +++.+++++++.+|.++|+||
T Consensus 1711 ~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq-----~~~~~le~~k~~LE~~~kdLq 1785 (1930)
T KOG0161|consen 1711 NSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQ-----ETSQKLERLKKSLERQVKDLQ 1785 (1930)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999 8899999999999999999999999 999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHhcCCCcchhhhh
Q 002878 675 CQHEDECRKLHEELHLQKSKEDRQRALLQLQWKVMGNKPQEDQEVN 720 (872)
Q Consensus 675 ~~~ee~~~~~~~~~~~q~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 720 (872)
.+|+|-......-...++++-|=+..-|-.+.-..+....+..-..
T Consensus 1786 ~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~ 1831 (1930)
T KOG0161|consen 1786 LRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGL 1831 (1930)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHH
Confidence 9999998888888888888877777777777766665544444333
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.97 E-value=1.7e-23 Score=263.84 Aligned_cols=624 Identities=21% Similarity=0.250 Sum_probs=371.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH-------HHHHh
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWK-------GLESK 110 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~-------~Le~k 110 (872)
...+..+...+..+++.++++..+--.+...+..+...+...+++..++.....+|...+.++...+. .+++.
T Consensus 963 e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~ 1042 (1930)
T KOG0161|consen 963 ENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKA 1042 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777766666666777777777777777777777666666666665554433 33333
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 111 FSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 111 ~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
...+...+..++..+..+..++..+...+...+.++..+..++++.+..++.+.....++...+..+..+++.-+.....
T Consensus 1043 ~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K 1122 (1930)
T KOG0161|consen 1043 KRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAK 1122 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444433333333333322222222222222222222222
Q ss_pred HHHHHhhhhhhhh---------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHH
Q 002878 191 RDKLYRDECCRTS---------------------NLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIK 249 (872)
Q Consensus 191 ~~k~~~~~~~~~~---------------------~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~ 249 (872)
..+.+.++...+. .-+.++..+...++.+.......+..++..++....+ +.++++
T Consensus 1123 ~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e---l~~qle 1199 (1930)
T KOG0161|consen 1123 AERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAE---LQEQLE 1199 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 2222222221221 2233444445555555555555566666665555444 489999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHHHHHhhHHhHHHhhhhhHhhh
Q 002878 250 LLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSLTFMEKFYQLNSHYESCFQSVQMER 329 (872)
Q Consensus 250 ~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl~~~~~~~~~~~~~E~ 329 (872)
.+......+++++.+|+.+++++...|..+.....++......+.+++.++.-+.. ........+......++.+.
T Consensus 1200 ~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~----~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1200 QLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLD----EQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999998888877777666666666666542222 11111111111111111111
Q ss_pred hhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002878 330 DLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIE 409 (872)
Q Consensus 330 d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~ 409 (872)
.- +.+.+.+....+..+......+..++++++.++..-.+. ...
T Consensus 1276 ~~----l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~--------------------------------k~~ 1319 (1930)
T KOG0161|consen 1276 EE----LSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETRE--------------------------------KSA 1319 (1930)
T ss_pred HH----HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHH
Confidence 10 011122222223333333444444444444444433333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Q 002878 410 TELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEK------------------FHAEMQKKEEEINNLK 471 (872)
Q Consensus 410 le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~------------------lq~el~~~eeele~lr 471 (872)
+...+..+..++..+..++++..+.+..+..+++.+..+..+|+.+ +...++.+.+.++.+.
T Consensus 1320 l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~ 1399 (1930)
T KOG0161|consen 1320 LENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAAN 1399 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333 3334444444444444
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH----------HH---
Q 002878 472 QEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQ----------YD--- 538 (872)
Q Consensus 472 k~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae~~----------y~--- 538 (872)
.....+++....|+.++..+...++.....+.....+.+.++..|++++...+.+...+..+... +.
T Consensus 1400 ~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~l 1479 (1930)
T KOG0161|consen 1400 AKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNAL 1479 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44446666666666666666666665555555666666777777777777666332222222222 11
Q ss_pred ----HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHh----------HHHHHHH
Q 002878 539 ----LMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERK----------CDQKLAE 602 (872)
Q Consensus 539 ----~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r----------~~~~L~~ 602 (872)
..++.+.........++. ++...+.++.+.++.|+.....+..++ +..++.+++.. ....+.+
T Consensus 1480 ee~~e~~e~l~renk~l~~ei~-dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1480 EELLEQLEELRRENKNLSQEIE-DLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQ 1558 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 123444555555566677 888888999999999998888888887 77777766653 3346788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--hhHHHHHHHHHHHHHHHHHHHHHhhhH-------------HH
Q 002878 603 CKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKA--EHIGELKCAELQAENELREKTTKLKSE-------------HE 667 (872)
Q Consensus 603 ~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~~a--~~~~el~~~q~~~~~~~~~~~~~~~~~-------------~e 667 (872)
.+.+++++|....+|++..+..++..+++.++++.+ +.+.|+-+.+++++.||+++.+.++.+ +.
T Consensus 1559 ~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q 1638 (1930)
T KOG0161|consen 1559 LRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQ 1638 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 899999999999999999999999999999999955 999999999999999999999999988 88
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHhhH
Q 002878 668 VQMKALQCQHEDECRKLHEELHLQKSKEDRQRALLQLQW 706 (872)
Q Consensus 668 ~qik~lq~~~ee~~~~~~~~~~~q~~~~e~~~~~~~~~~ 706 (872)
.|+++||.++++. ++..+++..|+..++|+.+++++=.
T Consensus 1639 ~~~k~lq~~~e~~-~~~~~e~~~q~~~aerr~~~l~~E~ 1676 (1930)
T KOG0161|consen 1639 AQLKELQRELEDA-QRAREELLEQLAEAERRLAALQAEL 1676 (1930)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 9999999999999999999887643
No 3
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.93 E-value=2.6e-27 Score=289.76 Aligned_cols=554 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 88 NENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 88 ~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
...+.|...+..+......+++..+.+..++++|...+..+...+.++++.++.++.++.+++.++++.++.++++...+
T Consensus 131 ~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k 210 (859)
T PF01576_consen 131 DAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQK 210 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888889999999999999999999999999999999999999999999999999888888777766
Q ss_pred HhH--------------HHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-
Q 002878 168 GSA--------------EEII-------TKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRL- 225 (872)
Q Consensus 168 ee~--------------e~~l-------~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~- 225 (872)
.-+ +..+ ..+..+|..++..+++.++.+..+...+.++.++++.+.++++++.. .+.
T Consensus 211 ~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e-~k~~ 289 (859)
T PF01576_consen 211 AKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEE-AKSE 289 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhh-hHHH
Confidence 333 2222 33788999999999999999999999999999999999999998763 444
Q ss_pred ---HHHHHhhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 002878 226 ---ETESLNSKVEEMHIDLQSKEDE-IKLLMITKENLEKEKSDLQMSRDSFEKKLVT-------SIREIKNLEGFVHVFA 294 (872)
Q Consensus 226 ---el~~l~~el~~~~~~L~~~~e~-l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~-------le~e~~~l~~~l~~~~ 294 (872)
.+..++.++..|...+..-... ++.+...+-++.+.+..++..++++...+.. +..++.++...|....
T Consensus 290 l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~ 369 (859)
T PF01576_consen 290 LERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQ 369 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667799999998876543333 4445555556666666666555554444444 4446777777788888
Q ss_pred HHHhHhhHhhHHHHHHHHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 295 AQLVDLDKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 295 ~~l~eldkk~~~f~~k~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~ 374 (872)
+....|++++. +|++....|...+..++.+++.+..+++. +..++..|...+.++...+..+.+.
T Consensus 370 ~~~~~LeKKqr----~fDk~l~e~k~~~~~~~~e~d~~q~e~r~-----------~~te~~~Lk~~lee~~e~~e~lere 434 (859)
T PF01576_consen 370 AAAAELEKKQR----KFDKQLAEWKAKVEELQAERDAAQREARE-----------LETELFKLKNELEELQEQLEELERE 434 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88888888887 78888888888877776666666555532 1233334444444444444444443
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 002878 375 QESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENME 454 (872)
Q Consensus 375 ~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~ 454 (872)
+. .+...+..+...+++....+..++.....|+.++..+...+.+++..++..+..+.+++..+..++.
T Consensus 435 ~k-----------~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~ 503 (859)
T PF01576_consen 435 NK-----------QLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ 503 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH-----------HHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2223333444444444444555666666666667777777888888898899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 455 KFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAK 534 (872)
Q Consensus 455 ~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae 534 (872)
.++..+....++++.+|+. ++..+.+|+.+|+.-.. .... ....+++|+..|.++..+++++++...++.
T Consensus 504 e~er~l~eKeeE~E~~Rr~---~qr~l~~le~~LE~E~k---~r~~----~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~ 573 (859)
T PF01576_consen 504 EIERELQEKEEEFEETRRN---HQRQLESLEAELEEERK---ERAE----ALREKKKLESDLNELEIQLDHANRANEEAQ 573 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHh---hHHHHHHHHhHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 9999999999999999999 88889988887643221 1222 233368999999999999998887777776
Q ss_pred HH---HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHhHHH----
Q 002878 535 KQ---YDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK---------ADKTIGEMERKCDQ---- 598 (872)
Q Consensus 535 ~~---y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~---------le~~l~e~e~r~~~---- 598 (872)
+. |+..+.+++..+........ .+...+..+.+++..|..++..+.... ++..+.++..+++.
T Consensus 574 k~~kk~q~qlkdlq~~lee~~~~~~-~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~ 652 (859)
T PF01576_consen 574 KQLKKLQAQLKDLQRELEEAQRARE-ELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQ 652 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 64 77888888888875433333 444788888899999999998888766 67777777665333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002878 599 --KLAECKEEAKQQLKRIQEEHAAIVI--SIQQEYDKKEMNLKAEHIGELKCAELQAENELREKTTKLKSEHEVQMKALQ 674 (872)
Q Consensus 599 --~L~~~k~e~e~~l~~~~eE~e~~~~--~~~~~~~~k~~~~~a~~~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~lq 674 (872)
.+...++.++..|..++.++++... ....++.+++.++.+.|.+||..+| +.+.+++.++++++.|||+|+
T Consensus 653 ~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq-----~~~~~le~~k~~LE~q~keLq 727 (859)
T PF01576_consen 653 NSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQ-----DHNQHLEKEKKALERQVKELQ 727 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999 8889999999999999999999999 999999999999999999999
Q ss_pred HHhhHHHHHH
Q 002878 675 CQHEDECRKL 684 (872)
Q Consensus 675 ~~~ee~~~~~ 684 (872)
.++++-.+-.
T Consensus 728 ~rl~e~E~~~ 737 (859)
T PF01576_consen 728 ARLEEAEQSA 737 (859)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 9999984433
No 4
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.89 E-value=1e-24 Score=267.16 Aligned_cols=563 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 91 AKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 91 ~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
..|...+......+..+..++..-...+..+...+..+..+|..++.++..-........+...+++.+|.++...|++.
T Consensus 7 ~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~ 86 (859)
T PF01576_consen 7 EELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEA 86 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444556666777777777777777777777777777777666666666677777777888888888888666
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 002878 171 EEII-------TKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQS 243 (872)
Q Consensus 171 e~~l-------~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~ 243 (872)
.+.. ..+..+|..|++.+++. .......+..+.++|.....+|
T Consensus 87 ~~~t~aq~E~~kkrE~El~~Lrr~LEe~----------------------------~~~~e~~~~~lrkkh~~~~~eL-- 136 (859)
T PF01576_consen 87 GGATQAQIELNKKREAELAKLRRDLEEA----------------------------NLQHEATLAELRKKHQDAVAEL-- 136 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hCcHHhhHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHhHHHHHHHH--
Confidence 4442 34666777777777663 2234455666777777665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHHHHHhhHHhHHHhhh
Q 002878 244 KEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSLTFMEKFYQLNSHYESCFQ 323 (872)
Q Consensus 244 ~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl~~~~~~~~~ 323 (872)
.++|+.+++.+.+++|++..|..+++++...|+.+.+....++..+..+.+.+.++..+...+. +....+.....
T Consensus 137 -~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e----r~~~el~~~k~ 211 (859)
T PF01576_consen 137 -NEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE----RQRNELTEQKA 211 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 8999999999999999999999999999999998887776666666666665555532222110 01001111111
Q ss_pred hhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002878 324 SVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEAL 403 (872)
Q Consensus 324 ~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L 403 (872)
.++.+++ ++...+.+....+..+...+..|..++.++...++.-.+....+. ..+..++.+++.|
T Consensus 212 kL~~E~~----eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~-----------~~l~~le~e~~~L 276 (859)
T PF01576_consen 212 KLQSENS----ELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALE-----------KQLRQLEHELEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhH-----------HHHHHHHHHHHHH
Confidence 1111110 111222222223333333333333333333333333333322222 2222333333333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002878 404 ISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLL-KISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVD 482 (872)
Q Consensus 404 ~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~-~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kie 482 (872)
...+++-......+...+..+..++..+...++.-.. .+.. +...+.++...+..+...++.++..+..+++...
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~Ee----lEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~ 352 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEE----LEEAKKKLERKLQELQEQLEEANAKVSSLEKTKK 352 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322223333333333333333333222221110 0111 1122344455555556666666666667777777
Q ss_pred hHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHH--------------HHHH
Q 002878 483 SIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAK--KQ-YDLML--------------ESKQ 545 (872)
Q Consensus 483 sLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae--~~-y~~~l--------------eeLq 545 (872)
.|..++.++...++.....+..+..+.+.|+..|.+|+..++.+...+..+. .. |...+ ..+.
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le 432 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE 432 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777777777777776666666667777888888888877763322221211 11 22222 2222
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH---HhHHHHHHHHHHHHHHHHHH
Q 002878 546 LELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK---------ADKTIGEME---RKCDQKLAECKEEAKQQLKR 613 (872)
Q Consensus 546 ~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~---------le~~l~e~e---~r~~~~L~~~k~e~e~~l~~ 613 (872)
.....+..++. ++...+.+..+.++.|...+..|.... ++..+...+ .|+...|.+++.+++++|..
T Consensus 433 re~k~L~~El~-dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~e 511 (859)
T PF01576_consen 433 RENKQLQDELE-DLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQE 511 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhc-cchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233344454 455555555555555555555554444 333333332 23566999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH--hhHHHHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHHHHHhh
Q 002878 614 IQEEHAAIVISIQQEYDKKEMNLKA--EHIGELKCAELQAENELREKTTKLKSE-------------HEVQMKALQCQHE 678 (872)
Q Consensus 614 ~~eE~e~~~~~~~~~~~~k~~~~~a--~~~~el~~~q~~~~~~~~~~~~~~~~~-------------~e~qik~lq~~~e 678 (872)
.++|++.++.+++..+..+.++|.+ ++..++.+++++||.+++++.++++.+ ++.+|++||..++
T Consensus 512 KeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~le 591 (859)
T PF01576_consen 512 KEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELE 591 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999966 899999999999999999999999887 8999999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHhhHHHh
Q 002878 679 DECRKLHEELHLQKSKEDRQRALLQLQWKVM 709 (872)
Q Consensus 679 e~~~~~~~~~~~q~~~~e~~~~~~~~~~~~~ 709 (872)
+. +++.+++..++...+|++..|+...-.+
T Consensus 592 e~-~~~~~~~~~~~~~~e~r~~~l~~elee~ 621 (859)
T PF01576_consen 592 EA-QRAREELREQLAVSERRLRALQAELEEL 621 (859)
T ss_dssp -------------------------------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999988776443
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=1.2e-15 Score=197.06 Aligned_cols=468 Identities=12% Similarity=0.126 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH----------HHHHHHhHhhhhhhhHHHHH--
Q 002878 56 ASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKL----------WKGLESKFSSTKTLSDQLTE-- 123 (872)
Q Consensus 56 e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~----------~~~Le~k~s~~k~~~~~l~~-- 123 (872)
......+......+..+...+....+.+......+......+.....+ +..++..+..+...+..+..
T Consensus 415 ~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1311)
T TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNS 494 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444455555555544444444444444444444433333 33344444444444444443
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002878 124 TLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTS 203 (872)
Q Consensus 124 ~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~ 203 (872)
....+...|......+..++..+..+..++..++.+ ++..++++.++..+......|..+...+.+.+....+ .| ..
T Consensus 495 ~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~-~~ 571 (1311)
T TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHH-TTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YF-PN 571 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CC
Confidence 556777788888889999999999999999999999 9999999999999999999999999999999988877 66 43
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 002878 204 NLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREI 283 (872)
Q Consensus 204 ~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~ 283 (872)
+ ..+..++.....++...+.....+++++..+++.+..+..++..+...+..+.+.+.. .-.+++|...|..++.++
T Consensus 572 ~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~~~~~~~~~~L~~~~~~l 648 (1311)
T TIGR00606 572 K--KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD-VCGSQDEESDLERLKEEI 648 (1311)
T ss_pred c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHH
Confidence 4 8899999999999999999999999999999999999999999999999888877772 125689999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhHhhHHHHHHHHhhH--------HhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHH
Q 002878 284 KNLEGFVHVFAAQLVDLDKQSLTFMEKFYQLN--------SHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKD 355 (872)
Q Consensus 284 ~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl~--------~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~ 355 (872)
..+..++..+.+ ...|+.++.... ++|.+.|..... .+.|..++...++. +.....
T Consensus 649 ~~~~~~~~~~~~--------~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee-~~~f~~~L~~~~~~-------~p~~~~ 712 (1311)
T TIGR00606 649 EKSSKQRAMLAG--------ATAVYSQFITQLTDENQSCCPVCQRVFQTEAE-LQEFISDLQSKLRL-------APDKLK 712 (1311)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHhhccCCcCCCCCCCCCChhH-HHHHHHHHHHHHhc-------chhhHH
Confidence 999999998887 345555555444 588888875522 34555454443333 333455
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------
Q 002878 356 ALQLVNQELNSKIIKLQKTQESVK---AQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSL-------- 424 (872)
Q Consensus 356 ~L~~el~eL~~ql~~L~~~~~~l~---~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l-------- 424 (872)
.+...+..++..++.+....+.+. ......++.++..+..++.++..+...++.+...+..+...+..+
T Consensus 713 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~ 792 (1311)
T TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT 792 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 666666666666666655544333 233356777778888888888887777777777777777765443
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhH--
Q 002878 425 -----LENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGE-- 497 (872)
Q Consensus 425 -----~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee-- 497 (872)
..++..++.++..+..++..... ......++.++..+..++..++..+..+......+..+|..|+..+..
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~~~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554442222 124566888888888899999888888888888888888888555433
Q ss_pred -HHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 498 -KEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRH 551 (872)
Q Consensus 498 -~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~ 551 (872)
....+........++...|.++...++.+...+.+++. .+..+...+..+
T Consensus 871 ~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~----~~~~~~~~~~~~ 921 (1311)
T TIGR00606 871 SEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE----QDSPLETFLEKD 921 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHH
Confidence 22333333334556777777777777666555555544 444444444444
No 6
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=99.73 E-value=4.1e-14 Score=160.41 Aligned_cols=318 Identities=19% Similarity=0.260 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHhhcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHHHHHhhHHhHHHhhhhhHhhhhh
Q 002878 255 KENLEKEKSDLQMSR---DSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSLTFMEKFYQLNSHYESCFQSVQMERDL 331 (872)
Q Consensus 255 ~~~lEKek~~Lq~e~---d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl~~~~~~~~~~~~~E~d~ 331 (872)
..+-+++|..|+..| ..|+++|++|+.++..|+.+|..+.. .|......+...|+..+.
T Consensus 34 r~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~----------~~~~~ts~ik~~ye~El~-------- 95 (546)
T KOG0977|consen 34 RDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG----------VVGRETSGIKAKYEAELA-------- 95 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hccCCCcchhHHhhhhHH--------
Confidence 344566777765555 68999999999999999999998876 244444455555555444
Q ss_pred hHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002878 332 SSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETE 411 (872)
Q Consensus 332 ~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le 411 (872)
.++..+++... +...++.++..|..+++++.+...... ..+......+....
T Consensus 96 ---~ar~~l~e~~~-------~ra~~e~ei~kl~~e~~elr~~~~~~~------------------k~~~~~re~~~~~~ 147 (546)
T KOG0977|consen 96 ---TARKLLDETAR-------ERAKLEIEITKLREELKELRKKLEKAE------------------KERRGAREKLDDYL 147 (546)
T ss_pred ---HHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HHHhhhHHHHHHHh
Confidence 33555666333 334444444444444444443332111 11111222333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 002878 412 LLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQL 491 (872)
Q Consensus 412 ~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~L 491 (872)
..+..++.++..+...+..+++++..|..+..+|...+..++..++.+.- +|. ++++++.+|..+|.|+
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl--------lr~---d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL--------LRV---DLQNRVQTLLEELAFL 216 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------HHH---HHHhHHHHHHHHHHHH
Confidence 55666666666666667777777777777777666666655554444431 333 4999999999999999
Q ss_pred HHHHhH-HHH---HHhcc---ccc---cccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhH
Q 002878 492 QNILGE-KEQ---LLLQH---NDK---EKKLEDQITENQAQLT-AAESRLSEAKKQYDLMLESKQLELSRHLKEISQRND 560 (872)
Q Consensus 492 k~~lee-~~~---~i~~~---~~~---~~~le~~L~elr~q~e-~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k 560 (872)
...|+. ... ....+ ..+ ...|...|.+++++|+ ....++.+++.||..++.+++....+...... .++
T Consensus 217 ~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~-~~r 295 (546)
T KOG0977|consen 217 KRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQN-YAR 295 (546)
T ss_pred HhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhH-HHH
Confidence 988754 111 11111 111 2478999999999999 89999999999999999999988887776666 777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 561 QEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERK-------CDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDK 631 (872)
Q Consensus 561 ~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r-------~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~ 631 (872)
+++..++..+..|.+.+..+...+ |+..|.+++-. |+..|... +..|..|++||..+..+++..+|.
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~k----d~~i~~mReec~~l~~Elq~LlD~ 371 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDK----DAEIAKMREECQQLSVELQKLLDT 371 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHhhch
Confidence 999999999999999999999998 77777777544 44455444 344688888888888888888777
Q ss_pred HHH
Q 002878 632 KEM 634 (872)
Q Consensus 632 k~~ 634 (872)
|.+
T Consensus 372 ki~ 374 (546)
T KOG0977|consen 372 KIS 374 (546)
T ss_pred HhH
Confidence 766
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.72 E-value=1.3e-09 Score=141.37 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=3.3
Q ss_pred ccccccc
Q 002878 791 THHEYEV 797 (872)
Q Consensus 791 ~~~~~~~ 797 (872)
|||..-+
T Consensus 1134 t~~~~~~ 1140 (1164)
T TIGR02169 1134 SLRSPMI 1140 (1164)
T ss_pred ECcHHHH
Confidence 5554433
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=99.71 E-value=4e-10 Score=141.79 Aligned_cols=97 Identities=21% Similarity=0.172 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 002878 207 DKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNL 286 (872)
Q Consensus 207 ~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l 286 (872)
..+...+..++..+......+..+..++......+...+..+..+...+..+...+.......++|...+..++.++..+
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l 424 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHH
Confidence 44455555566666666666666666777777777777777776666666666655554445677888888888888888
Q ss_pred HHHHHHHHHHHhHhhHh
Q 002878 287 EGFVHVFAAQLVDLDKQ 303 (872)
Q Consensus 287 ~~~l~~~~~~l~eldkk 303 (872)
...+..+.+.+..+.+-
T Consensus 425 ~~~~~~~~~~~~~~~~~ 441 (880)
T PRK02224 425 REREAELEATLRTARER 441 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777777765555433
No 9
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.70 E-value=1.9e-08 Score=127.02 Aligned_cols=161 Identities=23% Similarity=0.285 Sum_probs=107.1
Q ss_pred HHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------hhH------HHHHHHHHHHHHHHHHH
Q 002878 337 QNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKA----------QCL------EECRLAGEKISRLESEA 400 (872)
Q Consensus 337 k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~----------ql~------ee~~~le~~i~~Le~e~ 400 (872)
++..+-...++..+..++..|...+..+...+++|......... ++. ..+..+.+....|..+.
T Consensus 1159 R~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1159 RKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREEN 1238 (1822)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444455666666666666666666666666666554433221 111 23333345566778888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 002878 401 EALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKK----EEEINNLKQEHEK 476 (872)
Q Consensus 401 e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~----eeele~lrk~l~~ 476 (872)
+.....+.++...|..++.++.-+...+..+..++......+..|+.+...|+.+.+.-+... ..++..+..++..
T Consensus 1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~ 1318 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISR 1318 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999999888999999999999998877544331 4455555555555
Q ss_pred HHHhHHhHHHHHHHHHHHHhH
Q 002878 477 KEMLVDSIEKQFCQLQNILGE 497 (872)
Q Consensus 477 Le~kiesLe~El~~Lk~~lee 497 (872)
|...+...+..+..+...+..
T Consensus 1319 Lk~el~~ke~~~~el~~~~~~ 1339 (1822)
T KOG4674|consen 1319 LKEELEEKENLIAELKKELNR 1339 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.69 E-value=5.4e-13 Score=147.49 Aligned_cols=265 Identities=17% Similarity=0.265 Sum_probs=184.6
Q ss_pred HHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002878 338 NQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKL 417 (872)
Q Consensus 338 ~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eL 417 (872)
..+..||++|++++..+..|+.++..|..+|..+......... .....++..+..+...++++...+..+...+..+
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~---~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVS---RIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H---HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCc---ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 4567899999999999999999999999999998877422221 2233444666666666666666666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhH
Q 002878 418 EKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGE 497 (872)
Q Consensus 418 e~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee 497 (872)
...+..+...+.........++. ++..+..+++.......+++.++.+|..+|.|++..|++
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~------------------el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEE------------------ELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 55555555444444333222222 222222333333344447999999999999999999876
Q ss_pred ----H------HHHHhccccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Q 002878 498 ----K------EQLLLQHNDKEKKLEDQITENQAQLT-AAESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEINDI 566 (872)
Q Consensus 498 ----~------~~~i~~~~~~~~~le~~L~elr~q~e-~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei~el 566 (872)
. ...+........+|...|.+++.+|+ .+..++.+++.||..++.++..........+. .++.++..+
T Consensus 143 Ei~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~-~~~~E~~~~ 221 (312)
T PF00038_consen 143 EIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELE-SAKEELKEL 221 (312)
T ss_dssp HHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccc-hhHhHHHHH
Confidence 1 11223333446789999999999999 89999999999999999999999999988888 999999999
Q ss_pred HHHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 567 RRKYEVEKLEIVNMEKEK--ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQE 628 (872)
Q Consensus 567 rr~i~~L~~Ei~~L~~~~--le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~ 628 (872)
++.++.|+.++..+.+.+ |+..|.+++..+...+..... .|..++.++..++..++..
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~----~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQA----EIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHH----hhhccchhHHHHHHHHHHH
Confidence 999999999999999999 999999999988887766654 3466666666665555444
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.69 E-value=7.3e-09 Score=133.17 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhh
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTL 117 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~ 117 (872)
...+..+..++..+...+..+...+..+...+......+..+..++..+......+......+...+..++..+..+...
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555554444444444444333333333344444444444444
Q ss_pred hHHHHHHHHHH
Q 002878 118 SDQLTETLQHL 128 (872)
Q Consensus 118 ~~~l~~~l~~l 128 (872)
+..+...+..+
T Consensus 311 ~~~~~~~~~~~ 321 (1163)
T COG1196 311 LEELENELEEL 321 (1163)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.68 E-value=2.3e-09 Score=139.11 Aligned_cols=8 Identities=38% Similarity=0.600 Sum_probs=3.9
Q ss_pred hHHHHHhh
Q 002878 765 VSQLLKKV 772 (872)
Q Consensus 765 ~~~~~~~~ 772 (872)
|.++|+.+
T Consensus 1132 ~~~~~~~~ 1139 (1179)
T TIGR02168 1132 FANLLKEF 1139 (1179)
T ss_pred HHHHHHHh
Confidence 34455554
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.66 E-value=3.2e-08 Score=128.48 Aligned_cols=28 Identities=7% Similarity=0.059 Sum_probs=14.6
Q ss_pred CCCCcccccCchHHHHHhhhhcCCCCcc
Q 002878 754 DPPFLNEAQTPVSQLLKKVENVNTGSMI 781 (872)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (872)
|-|+.+.-...+..+..-+.....+.++
T Consensus 1118 DE~~~~ld~~~~~~~~~~~~~~~~~~~~ 1145 (1179)
T TIGR02168 1118 DEVDAPLDDANVERFANLLKEFSKNTQF 1145 (1179)
T ss_pred cCccccccHHHHHHHHHHHHHhccCCEE
Confidence 4455554444455666666666544333
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.66 E-value=8.2e-08 Score=121.39 Aligned_cols=220 Identities=18% Similarity=0.172 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHH
Q 002878 45 KLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTET 124 (872)
Q Consensus 45 k~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~ 124 (872)
...+..+.++++.++.++..+...+.+......+..+++.++...+..+......+..+...|.+-+...+..+..+...
T Consensus 653 ~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~e 732 (1822)
T KOG4674|consen 653 RENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQE 732 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888999999999999999999999999999999999999999999999999888988888888888888877
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHh-
Q 002878 125 LQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITK-------REKELEDLKIEREERDKLYR- 196 (872)
Q Consensus 125 l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~-------~~~eLe~Lk~~lee~~k~~~- 196 (872)
|-.....+..++.++..+..+-.-+...-..+...+..+.+....+...+.. +.......+..++.....+.
T Consensus 733 L~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~ 812 (1822)
T KOG4674|consen 733 LLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELER 812 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666665555554443333333333333333333333333322222 22222222222222111110
Q ss_pred ---hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002878 197 ---DECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSD 264 (872)
Q Consensus 197 ---~~~~~~~~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~ 264 (872)
.+...+....+++..+...+...+..+...+..+...+..|-..+..+...+..+......|++.+..
T Consensus 813 el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 813 ELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222233333333344444444444555555555566666666666666666666666665554
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.62 E-value=2.5e-07 Score=120.26 Aligned_cols=12 Identities=0% Similarity=-0.050 Sum_probs=6.5
Q ss_pred CCccccCCcCcc
Q 002878 778 GSMISIPKHHKK 789 (872)
Q Consensus 778 ~~~~~~~~~~~~ 789 (872)
++++-++.||.-
T Consensus 1127 ~~~~i~~t~~~~ 1138 (1164)
T TIGR02169 1127 EAQFIVVSLRSP 1138 (1164)
T ss_pred CCeEEEEECcHH
Confidence 444446666654
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.62 E-value=6.8e-08 Score=116.12 Aligned_cols=193 Identities=20% Similarity=0.281 Sum_probs=89.1
Q ss_pred HHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002878 338 NQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKL 417 (872)
Q Consensus 338 ~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eL 417 (872)
..|+.+...+.........|+.++..|...++.-......... .+..+......+..++.++...+...+..|+.|
T Consensus 322 ~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~----~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 322 QHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA----QIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443444444444445555555555555444333332222 222333444444555555554444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------hHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 002878 418 EKEIDSLLENLRSFENKLQDQLLKIS-------------SLEMENKENMEKFHAE--------MQKKEEEINNLKQEHEK 476 (872)
Q Consensus 418 e~ei~~l~~ei~e~E~~~e~Le~~l~-------------~Le~~~~~~~~~lq~e--------l~~~eeele~lrk~l~~ 476 (872)
...|..+...+.+-..++..+...+. .|+..+.. +.++... -....++++..+..+..
T Consensus 398 q~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~e-ker~~e~l~e~r~~~e~e~~Eele~~~~e~~~ 476 (775)
T PF10174_consen 398 QKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALRE-KERLQERLEEQRERAEKERQEELETYQKELKE 476 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444333333333333322 11111111 1112222 12345667777777777
Q ss_pred HHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 477 KEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKK 535 (872)
Q Consensus 477 Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae~ 535 (872)
+...+.+|+.++......+......+........+-...|..+.+.++........+..
T Consensus 477 lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ 535 (775)
T PF10174_consen 477 LKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEK 535 (775)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 77777777777777666665543333332222333455555555555544444444433
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=7.4e-08 Score=125.46 Aligned_cols=191 Identities=14% Similarity=0.146 Sum_probs=118.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHhhHH
Q 002878 35 SLTSGSFANLKLTAEKLVKEQASVKTDL--EMANSKLKKSMEHVRILEEKLQNAVNE----------NAKLKVKQKEDEK 102 (872)
Q Consensus 35 ~~~~~~l~~lk~~l~~l~~e~e~lq~el--~e~~~kiek~~~~i~lleeri~~l~~~----------~~~L~~~i~el~~ 102 (872)
.++.|.+..+...+..+...++.+.... ..+...|...+..+..++.++..+... .+++.....++..
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (1311)
T TIGR00606 467 EGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD 546 (1311)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888888776555432 234445555555555555555555533 3334444444444
Q ss_pred HHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002878 103 LWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELE 182 (872)
Q Consensus 103 ~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe 182 (872)
+...|..-++.+...+..+.+ -+. .. ..|...+......+..++..++.+...+..++..+.....++.
T Consensus 547 k~~~~~~~~~~~~~~~~~~~~-~~~---------~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~ 615 (1311)
T TIGR00606 547 KDEQIRKIKSRHSDELTSLLG-YFP---------NK-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELE 615 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCC---------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444444444444433 110 11 4667778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002878 183 DLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDL 241 (872)
Q Consensus 183 ~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L 241 (872)
.+..++......+. ..+ -..+|+..+..++..+..+..++..+..-..-+...+
T Consensus 616 ~~~~eL~~~~~~i~-~~~----~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~i 669 (1311)
T TIGR00606 616 SKEEQLSSYEDKLF-DVC----GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFI 669 (1311)
T ss_pred HHHHHHHHHHHHHh-cCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887766654 111 3456777777777777776666655544433333333
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.59 E-value=1e-07 Score=114.58 Aligned_cols=268 Identities=19% Similarity=0.231 Sum_probs=154.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhhHhhHHH
Q 002878 37 TSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENA-------------KLKVKQKEDEKL 103 (872)
Q Consensus 37 ~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~-------------~L~~~i~el~~~ 103 (872)
+-|.+..+..+.+.+..++..++..+..+...++..+..+....+.+..+...+. ....++.+....
T Consensus 112 ~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~ 191 (775)
T PF10174_consen 112 AQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEAR 191 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHH
Confidence 4456666655555555555555555555555555555555444444444442110 011122222233
Q ss_pred HHHHHHhHhhhhhhh--------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 104 WKGLESKFSSTKTLS--------------------DQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHL 163 (872)
Q Consensus 104 ~~~Le~k~s~~k~~~--------------------~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl 163 (872)
+..|+..+....... .-++..|..-+..|..+++.++.++.++..+...++-.+...+.+
T Consensus 192 ~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~ 271 (775)
T PF10174_consen 192 IMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRL 271 (775)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 333333332222222 124555666677777888888888888887776665444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002878 164 SLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTSNLM---DKNDAMIKKLEVTVADNRLETESLNSKVEEMHID 240 (872)
Q Consensus 164 ~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~---~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~ 240 (872)
...++.-......++..++.++-++......+......+.++. .++..-++.+.+.+.........|..++..++++
T Consensus 272 ~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~r 351 (775)
T PF10174_consen 272 DKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFR 351 (775)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344333333333444444444444444433333333333222 3333445556666666666777888888888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q 002878 241 LQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQS 304 (872)
Q Consensus 241 L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~ 304 (872)
|..+...++.....+..+..++..+..++.++.+.++..+..+..|.+.+..+...+.+=++..
T Consensus 352 le~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql 415 (775)
T PF10174_consen 352 LEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQL 415 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888999999888888888888888777777777777666666555444333
No 19
>PRK02224 chromosome segregation protein; Provisional
Probab=99.58 E-value=4e-08 Score=123.86 Aligned_cols=42 Identities=31% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCCcccccCchHHHHHhhhhcC-CC-CccccCCcCcccccccccccCCC
Q 002878 754 DPPFLNEAQTPVSQLLKKVENVN-TG-SMISIPKHHKKVTHHEYEVETSN 801 (872)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 801 (872)
|-|+++.-...+..++.-+..+. .| ++|-+ |||+...+..++
T Consensus 818 DEp~~~lD~~~~~~~~~~l~~~~~~~~~qvii------ish~~~~~~~ad 861 (880)
T PRK02224 818 DEPTVFLDSGHVSQLVDLVESMRRLGVEQIVV------VSHDDELVGAAD 861 (880)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCCeEEE------EECChHHHHhcC
Confidence 66777765555555554444332 23 22322 477766665433
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.52 E-value=1.5e-06 Score=111.97 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=9.9
Q ss_pred CchHHHHHhhhhcCCCCcc
Q 002878 763 TPVSQLLKKVENVNTGSMI 781 (872)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~ 781 (872)
.-|.++++..- .++|.
T Consensus 1107 ~r~~~~i~e~s---~~sQF 1122 (1163)
T COG1196 1107 ERVARLIKEMS---KETQF 1122 (1163)
T ss_pred HHHHHHHHHhC---cCCeE
Confidence 34566666655 47876
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=99.45 E-value=3.4e-06 Score=106.58 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=10.8
Q ss_pred cCCCCCcccccCchHHHHHh
Q 002878 752 EKDPPFLNEAQTPVSQLLKK 771 (872)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~ 771 (872)
-.|-||.|.-......++.-
T Consensus 817 ilDEp~~~lD~~~~~~l~~~ 836 (880)
T PRK03918 817 ILDEPTPFLDEERRRKLVDI 836 (880)
T ss_pred EEeCCCcccCHHHHHHHHHH
Confidence 34667777655444444433
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=99.44 E-value=3.4e-06 Score=106.54 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002878 561 QEINDIRRKYEVEKLEIVNMEKEK 584 (872)
Q Consensus 561 ~ei~elrr~i~~L~~Ei~~L~~~~ 584 (872)
..+..++..+..+..++..+....
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i 689 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRR 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 23
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=3.5e-06 Score=101.62 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=25.2
Q ss_pred HhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHH
Q 002878 479 MLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAES 528 (872)
Q Consensus 479 ~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~ 528 (872)
.+++.+...+..+...+...++.+.........+...+.++...++..+.
T Consensus 907 ~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~ 956 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEK 956 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444455555555555555544433
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.37 E-value=1.4e-05 Score=103.24 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=32.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002878 507 DKEKKLEDQITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIV 578 (872)
Q Consensus 507 ~~~~~le~~L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~ 578 (872)
.....+...|..+...+..++.....+. .|...+............... ....++..++..+..+..++.
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~~V~-eY~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~~~ 840 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRAEVI-EYEDWLQEEWDKVDELREEKP-ELEEQLRDLEQELQELEQELN 840 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665544444442 244444444444332222222 333444444444444444333
No 25
>PRK01156 chromosome segregation protein; Provisional
Probab=99.21 E-value=6.6e-05 Score=95.04 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=8.2
Q ss_pred CCCCCcccccCchHH
Q 002878 753 KDPPFLNEAQTPVSQ 767 (872)
Q Consensus 753 ~~~~~~~~~~~~~~~ 767 (872)
-|-|+++--...+..
T Consensus 831 lDEpt~~lD~~~~~~ 845 (895)
T PRK01156 831 MDEPTAFLDEDRRTN 845 (895)
T ss_pred EeCCCCcCCHHHHHH
Confidence 466776665544333
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.15 E-value=0.00016 Score=93.73 Aligned_cols=191 Identities=15% Similarity=0.241 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 388 LAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEI 467 (872)
Q Consensus 388 ~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeel 467 (872)
.++.++..++..+..+.....+++..+......+..+...+..+...++.....+..+......+..++...+ .+..
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~ 680 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK---EERK 680 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3344455555555555555555555555555555555555555555555555555555555444444333332 2333
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 468 NNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDLMLESKQLE 547 (872)
Q Consensus 468 e~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae~~y~~~leeLq~e 547 (872)
..+...+..++..+..+..++..+...+...-..... .....+.....++..+++.+...++.+...+...+..+...
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~--e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~ 758 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELLEELKEQLKELRN--ELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQ 758 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666655554332111111 11223344444555555555555566666666666666666
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002878 548 LSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK 584 (872)
Q Consensus 548 ~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~ 584 (872)
....+..-. --...|..++.++..|..+|..+....
T Consensus 759 ~~~eL~~~G-vD~~~I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 759 YNQELAGKG-VDPERIQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 654332221 112355666666666666666555444
No 27
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.12 E-value=0.00013 Score=90.62 Aligned_cols=389 Identities=15% Similarity=0.177 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 002878 127 HLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTSNLM 206 (872)
Q Consensus 127 ~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~ 206 (872)
.+...|...+..+..++..+..+...++-++.. ++..+.++............+..+...+......+....+...
T Consensus 494 ~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~~~~-~~~~~~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~--- 569 (1294)
T KOG0962|consen 494 ALKEKIAEKQNEMAQLEIQKKKLDEELDGLNKD-AEKRAKLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFPLTND--- 569 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccCccch---
Confidence 344445555556666666666666666666666 7777777777777777777777777777777655444443332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 002878 207 DKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIK-LLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKN 285 (872)
Q Consensus 207 ~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~-~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~ 285 (872)
..+..+...+...+......+..++...+..+.........+. .....+...++....-....++|.+.++.++.++..
T Consensus 570 ~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~ 649 (1294)
T KOG0962|consen 570 RSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEK 649 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Confidence 4556666667777766666677776666666655555555555 223333333333333334458999999999999999
Q ss_pred HHHHHHHHHHHHhHhhHhhHHHHHHHHhhHH------hHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHH
Q 002878 286 LEGFVHVFAAQLVDLDKQSLTFMEKFYQLNS------HYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQL 359 (872)
Q Consensus 286 l~~~l~~~~~~l~eldkk~~~f~~k~~kl~~------~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~ 359 (872)
...+++.++. ..+|+.++..... .|.+.|..- +.-.|...+...++. ...+...+..
T Consensus 650 ~rk~l~~lq~--------~s~~Y~k~Ie~~~~~~~CplC~r~f~~e--ee~ef~~~l~~~i~s-------~p~~~~~~~~ 712 (1294)
T KOG0962|consen 650 ARKDLAMLQG--------RSALYRKFIEIACRSHCCPLCQRSFTTE--EEVEFIKKLESKIDS-------APDKLEEAEV 712 (1294)
T ss_pred HHhhhhhhhh--------HHHHHHHHHHHHhhccCCCccCCccchH--HHHHHHHHHHHHHhc-------cchhHHHHHH
Confidence 9999999987 4667777765443 566655522 223344444333332 2222222333
Q ss_pred HHHHHHHHHH---HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------HHH
Q 002878 360 VNQELNSKII---KLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKE-------------IDS 423 (872)
Q Consensus 360 el~eL~~ql~---~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~e-------------i~~ 423 (872)
.+........ .+.+........+...++.+...+..+..++..+....+.....+..+... +..
T Consensus 713 ~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~ 792 (1294)
T KOG0962|consen 713 ELSKEEKIFEILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLER 792 (1294)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHH
Confidence 3332222211 122222111222223444444444444444444444444444444433332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhH---HHH
Q 002878 424 LLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGE---KEQ 500 (872)
Q Consensus 424 l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee---~~~ 500 (872)
+..++......++.+...+..-. .......++..+...+......+++.+..++..+.....+++.+.....+ ...
T Consensus 793 ~~~d~~~~~k~ie~~~s~l~~~~-d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~ 871 (1294)
T KOG0962|consen 793 FLKDLKLREKEIEELVSELDSSV-DGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQ 871 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333322101 11223455666666777777777777777777766666666665554322 222
Q ss_pred HHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 501 LLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQY 537 (872)
Q Consensus 501 ~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae~~y 537 (872)
.+.........++..+.++...+......+.++...+
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~ 908 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERI 908 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3333334444555566555555554444444444443
No 28
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=99.09 E-value=8.4e-05 Score=85.55 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=45.8
Q ss_pred HHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---hhHHHHHHHHHHHHHHHHHHH
Q 002878 590 GEMERKCDQK-------LAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKA---EHIGELKCAELQAENELREKT 659 (872)
Q Consensus 590 ~e~e~r~~~~-------L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~~a---~~~~el~~~q~~~~~~~~~~~ 659 (872)
.+++-+|+.. +...+..++..+-+.+.||......-+.....+++ +.. .++.||..+++|++.+..+..
T Consensus 692 ~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~s-LE~ELs~lk~el~slK~QLk~e~~eKE 770 (786)
T PF05483_consen 692 EETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKAS-LELELSNLKNELSSLKKQLKTERTEKE 770 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555554 44455667777888888888777766666554433 322 777888888888888777755
Q ss_pred H
Q 002878 660 T 660 (872)
Q Consensus 660 ~ 660 (872)
.
T Consensus 771 ~ 771 (786)
T PF05483_consen 771 K 771 (786)
T ss_pred H
Confidence 4
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=0.00016 Score=87.90 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=14.0
Q ss_pred CCcccc---cCchHHHHHhhhhcCCC
Q 002878 756 PFLNEA---QTPVSQLLKKVENVNTG 778 (872)
Q Consensus 756 ~~~~~~---~~~~~~~~~~~~~~~~~ 778 (872)
||++-+ -.|--|-.|.+.|+--|
T Consensus 1174 PFseGV~FSVrPpKKSWK~I~NLSGG 1199 (1293)
T KOG0996|consen 1174 PFSEGVMFSVRPPKKSWKNISNLSGG 1199 (1293)
T ss_pred CcccCceEEeeCchhhhhhcccCCcc
Confidence 666543 34666677777776544
No 30
>PRK01156 chromosome segregation protein; Provisional
Probab=99.01 E-value=0.00043 Score=87.76 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002878 350 IASEKDALQLVNQELNSKIIKLQ 372 (872)
Q Consensus 350 l~~e~~~L~~el~eL~~ql~~L~ 372 (872)
+..+...+...+..++..+.++.
T Consensus 421 l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 421 ISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=0.00036 Score=83.54 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002878 272 FEKKLVTSIREIKNLEGFVHVFAAQLVDLD 301 (872)
Q Consensus 272 ~~~~l~~le~e~~~l~~~l~~~~~~l~eld 301 (872)
+......+-..+..|...+..+.++++.++
T Consensus 477 l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~ 506 (1174)
T KOG0933|consen 477 LKQRRAKLHEDIGRLKDELDRLLARLANYE 506 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 444444444455555555555555555443
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.94 E-value=1e-05 Score=89.69 Aligned_cols=131 Identities=21% Similarity=0.268 Sum_probs=75.8
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHHHHHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHH
Q 002878 264 DLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQL 343 (872)
Q Consensus 264 ~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el 343 (872)
.|.+.+..|+++|..|+.++..|...|..+.... .+....+...|...+. .++..++.+
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~----------~~~~~~~~~~ye~el~-----------~lr~~id~~ 66 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKK----------GEEVSRIKEMYEEELR-----------ELRRQIDDL 66 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH-----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc----------cccCcccccchhhHHH-----------HhHHhhhhH
Confidence 3455567899999999999999999988877631 1122223333333333 334555553
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002878 344 NDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDS 423 (872)
Q Consensus 344 ~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~ 423 (872)
..++..+..++..+...+..+........ ..+..++..+..+..+++.......+++..+..|..++..
T Consensus 67 -------~~eka~l~~e~~~l~~e~~~~r~k~e~e~----~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 67 -------SKEKARLELEIDNLKEELEDLRRKYEEEL----AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHhhHHhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333322 2344556667777777777777777777777777777766
Q ss_pred HHH
Q 002878 424 LLE 426 (872)
Q Consensus 424 l~~ 426 (872)
+..
T Consensus 136 l~~ 138 (312)
T PF00038_consen 136 LKQ 138 (312)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 33
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=0.00043 Score=82.51 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 352 SEKDALQLVNQELNSKIIKLQKTQESVKAQC---LEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENL 428 (872)
Q Consensus 352 ~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql---~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei 428 (872)
..++..+.++.+|...|+.+.+.......++ ....+.++........+.+.+...+..+......++..+......+
T Consensus 671 k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~L 750 (1200)
T KOG0964|consen 671 KNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKEL 750 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Confidence 4445555555556665555555544443222 2333344444444444444444444444444444444444444344
Q ss_pred HHHHHHHHHHHHH
Q 002878 429 RSFENKLQDQLLK 441 (872)
Q Consensus 429 ~e~E~~~e~Le~~ 441 (872)
..+...+..+++.
T Consensus 751 e~i~~~l~~~~~~ 763 (1200)
T KOG0964|consen 751 EEIKTSLHKLESQ 763 (1200)
T ss_pred HHHHHHHHHHHHH
Confidence 4444333333333
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.93 E-value=0.00057 Score=83.22 Aligned_cols=218 Identities=19% Similarity=0.267 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHH
Q 002878 55 QASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQD 134 (872)
Q Consensus 55 ~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~ 134 (872)
++.+...+..+-..+......+.+.++.+.++...+......+..+... ..+...+..++++ -.|.+ +.+
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~-e~~~~~l~~Lk~k------~~W~~---V~~ 278 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQL-EDLKENLEQLKAK------MAWAW---VNE 278 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHH---HHH
Confidence 4555666666666666677777777777766665555555544432111 1122222222221 11111 122
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 002878 135 AEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIK 214 (872)
Q Consensus 135 ~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e 214 (872)
...++...+..+...+.++..+...+.....+.+.++..++..+..+..++..-......+.+..
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r--------------- 343 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEAR--------------- 343 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHH---------------
Confidence 23333333333444444444444444444444444444444444444444443333221111111
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 215 KLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEK-SDLQMSRDSFEKKLVTSIREIKNLEGFVHVF 293 (872)
Q Consensus 215 ~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek-~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~ 293 (872)
..+...+.+...+..+.....+.+..+.+.++.+.+.++.+++.- ..+..+.+....++..|.+++.+++..+..+
T Consensus 344 ---~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 344 ---KDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222233333333334444444555555555555555555 3356666666667777777777777766666
Q ss_pred HHHHhHh
Q 002878 294 AAQLVDL 300 (872)
Q Consensus 294 ~~~l~el 300 (872)
.....++
T Consensus 421 ~~e~~~~ 427 (1074)
T KOG0250|consen 421 REELNEV 427 (1074)
T ss_pred HHHHHHH
Confidence 6544333
No 35
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.85 E-value=0.00063 Score=78.59 Aligned_cols=178 Identities=18% Similarity=0.204 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002878 59 KTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKN 138 (872)
Q Consensus 59 q~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~ 138 (872)
-.++..-.+++.....-|.....-|+.+.=..+.|...+.+--.....|-.+...+...|.=|..+....+ ..
T Consensus 98 esd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsa-------EK 170 (786)
T PF05483_consen 98 ESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSA-------EK 170 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHH-------HH
Confidence 34455555566666666666666666666666677777766666677788888888888887777776653 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 002878 139 KEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELE-DLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLE 217 (872)
Q Consensus 139 ~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe-~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~E 217 (872)
...++.++++...-..+++..+.-+-+.+++++-..-.-+.++. +++..+... ..+... +.
T Consensus 171 ~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~-----------~~leee-------y~ 232 (786)
T PF05483_consen 171 MKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKF-----------EDLEEE-------YK 232 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------HHHHHH-------HH
Confidence 44677777777777777777777777777766665554444442 444443331 223333 34
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002878 218 VTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKE 261 (872)
Q Consensus 218 ee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKe 261 (872)
.++......+.-|..++.+.++.++++.-.+...+..++.|+-.
T Consensus 233 ~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~ 276 (786)
T PF05483_consen 233 KEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEK 276 (786)
T ss_pred HHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555555555555555555533
No 36
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=0.001 Score=80.55 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002878 120 QLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITK 176 (872)
Q Consensus 120 ~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~ 176 (872)
++.......-..+...++++...+..+......+..+..++..++...+..+..+..
T Consensus 293 ~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 293 KVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred hcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455556666666666666666666666666666666666666555544
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.82 E-value=0.00096 Score=78.89 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002878 117 LSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKRE 178 (872)
Q Consensus 117 ~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~ 178 (872)
.+..+...+..+..++...+..+...-. .|....+.+.++..+|+.+...-....
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~-------ELe~akr~veel~~kLe~~~~~~~~a~ 89 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALS-------ELESAKRTVEELKLKLEKAQAEEKQAE 89 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444444444444444444 444444555555555555444433333
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.81 E-value=6.7e-05 Score=86.36 Aligned_cols=182 Identities=14% Similarity=0.152 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhHhhHHHHH
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV---------------NENAKLKVKQKEDEKLWK 105 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~---------------~~~~~L~~~i~el~~~~~ 105 (872)
...+......-..++..++..+.....+..-+..+-..|...+.-+. .++..+..-+.+......
T Consensus 30 as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra 109 (546)
T KOG0977|consen 30 ASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERA 109 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555444 233333333333333444
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002878 106 GLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLK 185 (872)
Q Consensus 106 ~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk 185 (872)
.++.++.-+..+++++...+............++..+..-+..+..++.-+.+.+..+...+..+...+..+..+|..++
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44444444444444444444444333344444444445555555555555555555555555555555566666666666
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 002878 186 IEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVAD 222 (872)
Q Consensus 186 ~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e 222 (872)
.++..+.-.+++....+.++.++++.+....+.++.+
T Consensus 190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 6666666666666666666666666666555555543
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.78 E-value=0.00063 Score=78.53 Aligned_cols=85 Identities=24% Similarity=0.241 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHH
Q 002878 44 LKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTE 123 (872)
Q Consensus 44 lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~ 123 (872)
++.+++....+...+......+......+..++.-++..+.........|.....++......+..+...+.....++..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444333333333333333333333333
Q ss_pred HHHHH
Q 002878 124 TLQHL 128 (872)
Q Consensus 124 ~l~~l 128 (872)
.+..+
T Consensus 221 ri~~L 225 (546)
T PF07888_consen 221 RIREL 225 (546)
T ss_pred HHHHH
Confidence 33333
No 40
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.76 E-value=0.0016 Score=77.98 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=66.7
Q ss_pred HHHhHhhhhhhhHH-HHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002878 107 LESKFSSTKTLSDQ-LTETLQHLASQVQDAEKNKEFF-----EDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKE 180 (872)
Q Consensus 107 Le~k~s~~k~~~~~-l~~~l~~l~~~i~~~E~~~~~l-----E~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~e 180 (872)
-+..|..+...+++ .+..+..+...+-+++.....+ ...+..+...++....++..+...+..+...-..-...
T Consensus 62 s~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~ 141 (569)
T PRK04778 62 SEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREE 141 (569)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888 5557777777777776543333 33455555555555555566666665555555556666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 002878 181 LEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVT 219 (872)
Q Consensus 181 Le~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee 219 (872)
+..++..+.+..+.+++..+....+...+..-+..++..
T Consensus 142 v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~ 180 (569)
T PRK04778 142 VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEE 180 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH
Confidence 666666666666665555544444444444444444433
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.76 E-value=0.0019 Score=78.78 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV 87 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~ 87 (872)
.++.+...+...-+.++..+..|......|..+.-++...++++.++.
T Consensus 208 ~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~ 255 (1074)
T KOG0250|consen 208 QLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLE 255 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 556666666666666667777766666666666666666666666554
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.71 E-value=0.0011 Score=76.47 Aligned_cols=63 Identities=11% Similarity=0.276 Sum_probs=24.8
Q ss_pred HHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 102 KLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLS 164 (872)
Q Consensus 102 ~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~ 164 (872)
.++..++..+...+..+..|......+......+..+...+..++.+....+..+...+..+.
T Consensus 171 ~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~ 233 (546)
T PF07888_consen 171 EEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333333333333333333333333333333333333
No 43
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.71 E-value=0.0018 Score=75.60 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002878 226 ETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSD----LQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLD 301 (872)
Q Consensus 226 el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~----Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eld 301 (872)
....|..++.+.+-.++.+.+.++.++............ +..++-.+..+...+..++..+...+.++..++.+|+
T Consensus 278 kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 278 KNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 344455556666666666666666665555444333222 3344445555555555556666666666666666666
Q ss_pred HhhH
Q 002878 302 KQSL 305 (872)
Q Consensus 302 kk~~ 305 (872)
|+..
T Consensus 358 Kkrd 361 (1265)
T KOG0976|consen 358 KKRD 361 (1265)
T ss_pred HHHH
Confidence 6654
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.70 E-value=0.0051 Score=80.22 Aligned_cols=216 Identities=10% Similarity=0.153 Sum_probs=90.7
Q ss_pred hhhhhhhccccCccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 12 LDQFKSLSRSAKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENA 91 (872)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~ 91 (872)
-|.|+.|-|-+-+++.. -+-..-.+...+-++....+........++...+..+.-+...+..+...+.
T Consensus 256 rdlFk~lI~~~~~~~aa-----------d~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~ 324 (1486)
T PRK04863 256 RDLFKHLITESTNYVAA-----------DYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAES 324 (1486)
T ss_pred HHHHHHHhhhhhhhhHH-----------HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799998875444431 1112222222222223334444444444444444444444444444444444
Q ss_pred HHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002878 92 KLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAE 171 (872)
Q Consensus 92 ~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e 171 (872)
.|..+.......... ....-.....+..+...+..+...+...+..+..+...+.++..++..+...+..+..++....
T Consensus 325 kLEkQaEkA~kyleL-~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelq 403 (1486)
T PRK04863 325 DLEQDYQAASDHLNL-VQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQ 403 (1486)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333332211 1111122233333444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002878 172 EIITKREKELEDLKIEREERDKLYRDECCR-TSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDL 241 (872)
Q Consensus 172 ~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~-~~~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L 241 (872)
..+...+.++..+........... ..|. ..=...+...++.+++..+.+....+..+..++......+
T Consensus 404 qel~elQ~el~q~qq~i~~Le~~~--~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 404 QALDVQQTRAIQYQQAVQALERAK--QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443332221 1111 1112344555555555555554444444444444443333
No 45
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=0.0027 Score=76.40 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 002878 388 LAGEKISRLESEAEALI----SKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENK 450 (872)
Q Consensus 388 ~le~~i~~Le~e~e~L~----~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~ 450 (872)
.....+..++....+.. .++.++.+.|..+..++..-..+.+..++.++.|..++..++.+..
T Consensus 766 ~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~ 832 (1174)
T KOG0933|consen 766 KCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEIS 832 (1174)
T ss_pred HHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444431 2234444444444444444444444555555556555555555443
No 46
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.68 E-value=0.0022 Score=74.80 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhH
Q 002878 42 ANLKLTAEKLVKEQASVKTDLEMANSK-LKKSMEHVRILEEKLQNAV-NENAKLKVKQKEDEKLWKGLESKFSSTKTLSD 119 (872)
Q Consensus 42 ~~lk~~l~~l~~e~e~lq~el~e~~~k-iek~~~~i~lleeri~~l~-~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~ 119 (872)
+.++..+-..+.-+..++.+-..+... +++.-..+.+..+.-.+.. +.-..+......++..+..+++.+..++..|.
T Consensus 37 edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~ 116 (1265)
T KOG0976|consen 37 EDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCL 116 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555554444333 3333333333333222222 22233444444555566666666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002878 120 QLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQ 156 (872)
Q Consensus 120 ~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el 156 (872)
.+-.+...++..|+.++.+++.-+-++++....+..+
T Consensus 117 ~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l 153 (1265)
T KOG0976|consen 117 RLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL 153 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666666676666666666666666665555554443
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.66 E-value=0.0028 Score=75.04 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 157 KQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDK 193 (872)
Q Consensus 157 ~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k 193 (872)
..++...+.++...-..|.....+|..++.++.....
T Consensus 115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~ 151 (522)
T PF05701_consen 115 KAELESAREQYASAVAELDSVKQELEKLRQELASALD 151 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666555433
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.66 E-value=0.0018 Score=77.69 Aligned_cols=86 Identities=10% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 002878 30 RPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLES 109 (872)
Q Consensus 30 ~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~ 109 (872)
|..-|-++...+......+...+...+..+-- .+...+..+...+...++++..+......|..........+..+..
T Consensus 70 ~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~ 147 (569)
T PRK04778 70 RQKWDEIVTNSLPDIEEQLFEAEELNDKFRFR--KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKD 147 (569)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555444433222 3444455555555555555555555555555555444444444444
Q ss_pred hHhhhhhh
Q 002878 110 KFSSTKTL 117 (872)
Q Consensus 110 k~s~~k~~ 117 (872)
.+..++..
T Consensus 148 ~y~~~rk~ 155 (569)
T PRK04778 148 LYRELRKS 155 (569)
T ss_pred HHHHHHHH
Confidence 44444433
No 49
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.57 E-value=0.00011 Score=77.94 Aligned_cols=147 Identities=15% Similarity=0.182 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHH
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQ 120 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~ 120 (872)
+..++..+......+..+...+.............+..+..++..+...+.+...++.....++..++.........+..
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777777777777777777777666666666666666666666666655555555555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002878 121 LTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIE 187 (872)
Q Consensus 121 l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~ 187 (872)
|-.........+..++..+........+...++.++.+.+.-+...|+.++..+......+..|...
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~e 149 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEE 149 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Confidence 5555555555555555544444444444444444444444444444444444444444444433333
No 50
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.55 E-value=2.4e-07 Score=113.75 Aligned_cols=66 Identities=14% Similarity=0.293 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHH--Hh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 560 DQEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEME--RK------------CDQKLAECKEEAKQQLKRIQEEHAAIVI 623 (872)
Q Consensus 560 k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e--~r------------~~~~L~~~k~e~e~~l~~~~eE~e~~~~ 623 (872)
...+..++..+..|+.++..|...+ |+..|.... .. .+... ....--...|..|+.|.+.++.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~-~~~~~k~~~l~~L~~En~~L~~ 580 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTS-KAEQIKKSTLEALQAENEDLLA 580 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777 666655411 11 11111 1111113456777777777776
Q ss_pred HHH
Q 002878 624 SIQ 626 (872)
Q Consensus 624 ~~~ 626 (872)
.+.
T Consensus 581 ~l~ 583 (722)
T PF05557_consen 581 RLR 583 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 51
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=0.0054 Score=71.64 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 272 FEKKLVTSIREIKNLEGFVHVFAA 295 (872)
Q Consensus 272 ~~~~l~~le~e~~~l~~~l~~~~~ 295 (872)
|.+.+..++-++.++...+..+..
T Consensus 297 l~~~~~~LELeN~~l~tkL~rwE~ 320 (716)
T KOG4593|consen 297 LQSTLLGLELENEDLLTKLQRWER 320 (716)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555544
No 52
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.47 E-value=0.0095 Score=71.79 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002878 118 SDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEII 174 (872)
Q Consensus 118 ~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l 174 (872)
.+-.+..-.++...++++++.++.|+.++++-...+-.+...+.++.+.++-++..+
T Consensus 165 ~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~ 221 (1195)
T KOG4643|consen 165 YDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEI 221 (1195)
T ss_pred chhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666677777887888887777776666666655555555555444443
No 53
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.47 E-value=0.0068 Score=69.99 Aligned_cols=33 Identities=9% Similarity=0.219 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 585 ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISI 625 (872)
Q Consensus 585 le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~ 625 (872)
+...+.++..||...|.-+ -+..+|+++++..+
T Consensus 909 ~~~~ledL~qRy~a~Lqmy--------GEk~Ee~EELrlDl 941 (961)
T KOG4673|consen 909 IKAELEDLRQRYAAALQMY--------GEKDEELEELRLDL 941 (961)
T ss_pred HHHHHHHHHHHHHHHHHHh--------cchHHHHHHHHhhH
Confidence 6667777777777777655 44455556555544
No 54
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=0.0085 Score=70.09 Aligned_cols=46 Identities=17% Similarity=0.100 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH--HH---hh--HHHHHHHHH
Q 002878 604 KEEAKQQLKRIQEEHAAIVISIQQEY-DKKEMNL--KA---EH--IGELKCAEL 649 (872)
Q Consensus 604 k~e~e~~l~~~~eE~e~~~~~~~~~~-~~k~~~~--~a---~~--~~el~~~q~ 649 (872)
+..-+.++..++.|++.++..+.... +..+..+ .+ .+ ..|+...++
T Consensus 554 ~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ 607 (716)
T KOG4593|consen 554 RQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKK 607 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHH
Confidence 34446678888888888888555443 3333333 11 22 357777763
No 55
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.43 E-value=0.011 Score=70.65 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=55.7
Q ss_pred HHHhHhhhhhhhHHHH-HHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002878 107 LESKFSSTKTLSDQLT-ETLQHLASQVQDAEKNK-----EFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKE 180 (872)
Q Consensus 107 Le~k~s~~k~~~~~l~-~~l~~l~~~i~~~E~~~-----~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~e 180 (872)
-...|..+...++++. ..+..+...+-+++... ......+..+...++.+...+..+...++.+...-..-...
T Consensus 58 t~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~ 137 (560)
T PF06160_consen 58 TEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREE 137 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777787777 56777777776666432 23334455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 002878 181 LEDLKIEREERDKLYRDECCRT 202 (872)
Q Consensus 181 Le~Lk~~lee~~k~~~~~~~~~ 202 (872)
+..++..+....+.+....+..
T Consensus 138 i~~l~~~y~~lrk~ll~~~~~~ 159 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSFSY 159 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 5566665555555544444333
No 56
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.40 E-value=0.00089 Score=71.09 Aligned_cols=84 Identities=15% Similarity=0.240 Sum_probs=40.7
Q ss_pred HHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 89 ENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLG 168 (872)
Q Consensus 89 ~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLe 168 (872)
....+......+..++..|+..+..+...+..++..+..........+..++.++........+++.+..++..+....+
T Consensus 30 ~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~e 109 (237)
T PF00261_consen 30 RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAE 109 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444445555555555555555555555555555555555555555444444444444444444444443
Q ss_pred hHHH
Q 002878 169 SAEE 172 (872)
Q Consensus 169 e~e~ 172 (872)
.+..
T Consensus 110 e~e~ 113 (237)
T PF00261_consen 110 EAER 113 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 57
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.39 E-value=0.016 Score=70.54 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSK--LKKSMEHVRILEEKLQNAV 87 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~k--iek~~~~i~lleeri~~l~ 87 (872)
..=|..+..-+.+|......+...-.++..- +....+....+++++..+.
T Consensus 1163 h~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir 1214 (1758)
T KOG0994|consen 1163 HECFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIR 1214 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHH
Confidence 3446666677777766665555554444433 4455555555555555443
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.39 E-value=0.029 Score=73.51 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Q 002878 611 LKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELREKTTKLKSEHEVQMKALQCQHEDE 680 (872)
Q Consensus 611 l~~~~eE~e~~~~~~~~~~~~k~~~~~a~~~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~lq~~~ee~ 680 (872)
+...+.++.++-.......+..+......+...|..-+ .-+..+++-....+..|..|..++...
T Consensus 1036 L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~re~EIe~L~kkL~~~ 1100 (1486)
T PRK04863 1036 LQELKQELQDLGVPADSGAEERARARRDELHARLSANR-----SRRNQLEKQLTFCEAEMDNLTKKLRKL 1100 (1486)
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333333334444444443 333344444444555555555555554
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.37 E-value=0.015 Score=69.28 Aligned_cols=139 Identities=24% Similarity=0.394 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 002878 386 CRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDS-----------LLENLRSFENKLQDQLLKISSLEMENKENME 454 (872)
Q Consensus 386 ~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~-----------l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~ 454 (872)
.+-++++-..|..+++.+.+++++++..+.-|+.+|.. -+.+++.....+.+..-++-.|...-.....
T Consensus 320 KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q 399 (1243)
T KOG0971|consen 320 KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ 399 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34556778888999999999999999888888888764 3333333333333333333333333344456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhH---HHHHHhccccccccHHHHHHHHHHHHH
Q 002878 455 KFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGE---KEQLLLQHNDKEKKLEDQITENQAQLT 524 (872)
Q Consensus 455 ~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee---~~~~i~~~~~~~~~le~~L~elr~q~e 524 (872)
+++.++..+..++.++++..+.|..+++.++..|..++..++. ....+..+..+..+|+..+..++..+.
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~ 472 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVG 472 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 6777888888888888888888888888888888888888876 444566555566666666555554444
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.37 E-value=0.018 Score=70.12 Aligned_cols=90 Identities=9% Similarity=0.071 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002878 60 TDLEMANSKLKKSMEHV---RILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAE 136 (872)
Q Consensus 60 ~el~e~~~kiek~~~~i---~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E 136 (872)
+.+.....+++.+.+-+ ++..+.+.++....+.|..++......+-+++..++.+...+.-....|++|+.....+.
T Consensus 1201 s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~ 1280 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLL 1280 (1758)
T ss_pred hHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHH
Confidence 34444445544444443 455566666666666666666666666666666666655555555555555555544444
Q ss_pred HhHHHHHHHHHHH
Q 002878 137 KNKEFFEDKISSS 149 (872)
Q Consensus 137 ~~~~~lE~el~e~ 149 (872)
...+.|+++++.+
T Consensus 1281 ~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1281 TTYKELREQLEKI 1293 (1758)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.33 E-value=0.019 Score=68.74 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 002878 459 EMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNI 494 (872)
Q Consensus 459 el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~ 494 (872)
.+..+...+...+-+++.+...+......+..+...
T Consensus 452 ~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 452 EIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555444444333
No 62
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.31 E-value=0.021 Score=68.63 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSD 119 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~ 119 (872)
.-+.+...+.+++.++..++..+.....+.+++......+....+.+...+.+|..++.+.+.+-..+-..++++.-++.
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 120 QLTETLQHLASQVQDAE---KNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 120 ~l~~~l~~l~~~i~~~E---~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
.|+.++..+...-.+++ .+++.++.+..-+...++++.+...-.-.+|+++-..+..=..+-..|++++..
T Consensus 108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988866555544 455666666666666666666655555555566655555444444455555544
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.15 E-value=0.048 Score=66.04 Aligned_cols=273 Identities=18% Similarity=0.189 Sum_probs=122.3
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002878 344 NDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDS 423 (872)
Q Consensus 344 ~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~ 423 (872)
.++...+...+..|..+-.-|+.+|..++.....+ .++-++-.+...+.++..+.+..+...++|....+.|...-..
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~~--tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eq 340 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGA--TLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQ 340 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccC--ChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777788888888888888887766431 1222333455556666666666666666665555555554333
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHhHhH--------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHhH
Q 002878 424 LLENLRSFEN-------KLQDQLLKISSLEM--------ENKENMEKFHA----EMQKKEEEINNLKQEHEKKEMLVDSI 484 (872)
Q Consensus 424 l~~ei~e~E~-------~~e~Le~~l~~Le~--------~~~~~~~~lq~----el~~~eeele~lrk~l~~Le~kiesL 484 (872)
+.....-..+ .-..+......|.. +......-++. .+......+-.+.+.-..|..+++-|
T Consensus 341 L~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~L 420 (1195)
T KOG4643|consen 341 LDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEIL 420 (1195)
T ss_pred hhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHH
Confidence 3332222211 11122222222222 11111110110 01111111111111111244444444
Q ss_pred HHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Q 002878 485 EKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEA--KKQYDLMLESKQLELSRHLKEISQRNDQE 562 (872)
Q Consensus 485 e~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~ea--e~~y~~~leeLq~e~~~~~eel~~~~k~e 562 (872)
+..|..+.....+ .....+++......+.............- +.....++-.++.++.....++. ..
T Consensus 421 eeri~ql~qq~~e-------led~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~----~~ 489 (1195)
T KOG4643|consen 421 EERINQLLQQLAE-------LEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELL----NQ 489 (1195)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 4444443333222 11112233333333333222221111111 11111223333333333333333 55
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 563 INDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYD 630 (872)
Q Consensus 563 i~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~ 630 (872)
|..++..++.-..++..+.+.+ +..++......|... .+--..+++.+-.+++|-.-+..+++-...
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~-~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELL-SNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666 556666665556543 333346667777777777777776666655
No 64
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.05 Score=64.90 Aligned_cols=67 Identities=10% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 002878 43 NLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLES 109 (872)
Q Consensus 43 ~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~ 109 (872)
.+..+...+....+.++.....+...+..+...+.....+...+...++.+...+..+-.+...+..
T Consensus 52 ~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~ 118 (698)
T KOG0978|consen 52 ELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNK 118 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444455555555555555555554444444444444444444433
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.07 E-value=2.6e-06 Score=104.64 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=6.6
Q ss_pred HHHhhHHHhc
Q 002878 701 LLQLQWKVMG 710 (872)
Q Consensus 701 ~~~~~~~~~~ 710 (872)
..-++|+|.-
T Consensus 641 ~~llGyki~~ 650 (722)
T PF05557_consen 641 YSLLGYKIDF 650 (722)
T ss_dssp HHHHSEEEEE
T ss_pred HHHhcceeee
Confidence 4456888863
No 66
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.97 E-value=0.051 Score=59.90 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHH
Q 002878 453 MEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLT 524 (872)
Q Consensus 453 ~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e 524 (872)
..+++.-+..-++-|...+.+++.+.+++..|+.+...|+..++..+..+.........+...+..+..+++
T Consensus 225 f~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 225 FEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788899999999999999999999999999999988766555433333344444444444433
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.87 E-value=0.023 Score=68.26 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=4.5
Q ss_pred hhhhhhhc
Q 002878 12 LDQFKSLS 19 (872)
Q Consensus 12 ~~~~~~~~ 19 (872)
++.|+.+.
T Consensus 127 ~~~f~~~v 134 (562)
T PHA02562 127 YKSFKQIV 134 (562)
T ss_pred HHHHhHHh
Confidence 35576653
No 68
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.85 E-value=7e-06 Score=100.75 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 002878 558 RNDQEINDIRRKYEVEKLEIV 578 (872)
Q Consensus 558 ~~k~ei~elrr~i~~L~~Ei~ 578 (872)
.++.++.+..+.++.|+.+..
T Consensus 626 ~L~~ql~e~~~~i~~lE~~~e 646 (713)
T PF05622_consen 626 ALKKQLQEKDRRIESLEKELE 646 (713)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555554443
No 69
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.11 Score=59.98 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH
Q 002878 71 KSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLW 104 (872)
Q Consensus 71 k~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~ 104 (872)
+..+.+..+.+++..+.++..++..-....+.+.
T Consensus 256 k~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 256 KDPGKEESLREKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 3333444444444444444444333333333333
No 70
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.11 Score=59.92 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 002878 246 DEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIR 281 (872)
Q Consensus 246 e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~ 281 (872)
++++.....+.++.+++..++.+.|.+...+-.+.-
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445555555555555555555555555554444433
No 71
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.84 E-value=0.15 Score=61.24 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=15.8
Q ss_pred CCCcccccCchHHHHHhhhhcC
Q 002878 755 PPFLNEAQTPVSQLLKKVENVN 776 (872)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~ 776 (872)
+|..+.|--+|-.+|.=+.|+.
T Consensus 568 ~p~dnpTAqqImqLL~eiQnpq 589 (617)
T PF15070_consen 568 SPHDNPTAQQIMQLLQEIQNPQ 589 (617)
T ss_pred CCCCCchHHHHHHHhHhcCCcc
Confidence 4666667777777777777766
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.81 E-value=0.069 Score=64.16 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 250 LLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAA 295 (872)
Q Consensus 250 ~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~ 295 (872)
.+...+..++.++..+....++|.+.|..++.++..+...+..+..
T Consensus 231 ~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~ 276 (562)
T PHA02562 231 TIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQK 276 (562)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555556677777777777777777777766665
No 73
>PRK09039 hypothetical protein; Validated
Probab=97.73 E-value=0.0024 Score=71.43 Aligned_cols=132 Identities=14% Similarity=0.200 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHh
Q 002878 483 SIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDLMLE---SKQLELSRHLKEISQRN 559 (872)
Q Consensus 483 sLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae~~y~~~le---eLq~e~~~~~eel~~~~ 559 (872)
.+..+|..+...+.++...+.........++..|.+++.+|..++..+..++.||..... .++.....+..++. ..
T Consensus 50 ~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~-~~ 128 (343)
T PRK09039 50 GKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELD-SE 128 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH-HH
Confidence 333333333333333444444445556789999999999999999999999999987655 66777777788888 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 560 DQEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVI 623 (872)
Q Consensus 560 k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~ 623 (872)
+..+.+..+.+..|+.+|..|+.+. ++.+|...+.+. ++...+|..+..+++.++.
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~--------~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD--------RESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 888888887765 3334445555555555543
No 74
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.67 E-value=0.16 Score=56.78 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=30.7
Q ss_pred HHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002878 92 KLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDC 155 (872)
Q Consensus 92 ~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~e 155 (872)
++...+..+..+|..|.....-..+-+..+...+..+-..+..+..+|...|.++.-++...+.
T Consensus 292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~ 355 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDE 355 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444555555555555555555555555555555555444444444444444444443333333
No 75
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.33 Score=59.07 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHH
Q 002878 642 GELKCAELQAENELREKTTKLKSEHEVQMKALQCQHEDECRKLH 685 (872)
Q Consensus 642 ~el~~~q~~~~~~~~~~~~~~~~~~e~qik~lq~~~ee~~~~~~ 685 (872)
+||.+-+....-=+..+-.+-..+++.++|-.-....+..++|-
T Consensus 994 eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~LV 1037 (1200)
T KOG0964|consen 994 EELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRLV 1037 (1200)
T ss_pred HHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444443333334444455556677888888878887766553
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.59 E-value=0.28 Score=57.30 Aligned_cols=45 Identities=7% Similarity=-0.016 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 002878 246 DEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFV 290 (872)
Q Consensus 246 e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l 290 (872)
+.|..++..+..-++....++...+++.++...++..+..+.+++
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dl 567 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDL 567 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 344444444444444444444444555555555555555555444
No 77
>PRK11637 AmiB activator; Provisional
Probab=97.58 E-value=0.055 Score=62.73 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q 002878 149 SMNAVDCQKQQMDH 162 (872)
Q Consensus 149 ~~~kl~el~rql~d 162 (872)
+..++..++.++.+
T Consensus 101 ~~~ei~~l~~eI~~ 114 (428)
T PRK11637 101 LNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 78
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.58 E-value=1.5e-05 Score=97.87 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=0.0
Q ss_pred HhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHH---HHHHHHHHHH
Q 002878 109 SKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQ---MDHLSLKLGSAEE---IITKREKELE 182 (872)
Q Consensus 109 ~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rq---l~dl~akLee~e~---~l~~~~~eLe 182 (872)
.+...++..++.|...+..+...+.++...+..++.++.+++.+..++... ...+...++.++. .+.++...++
T Consensus 239 ~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve 318 (713)
T PF05622_consen 239 VELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVE 318 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666555555555556666666666666666666555433 2233333344433 2344666666
Q ss_pred HHHHHHHHH
Q 002878 183 DLKIEREER 191 (872)
Q Consensus 183 ~Lk~~lee~ 191 (872)
..+.-+++.
T Consensus 319 ~YKkKLed~ 327 (713)
T PF05622_consen 319 KYKKKLEDL 327 (713)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 666655554
No 79
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.49 E-value=0.38 Score=57.59 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=19.3
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002878 226 ETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKE 261 (872)
Q Consensus 226 el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKe 261 (872)
++..+..++..+..++..+++.+..|.....++-+.
T Consensus 448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344455555555555555555555555555444444
No 80
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.44 E-value=0.42 Score=55.82 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 350 IASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLR 429 (872)
Q Consensus 350 l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~ 429 (872)
|......+...+..++..+..++..+.....++.+....++.+......++.-+...++.....|..++.++..++.++.
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777778888888887777666655554444445556666666777777777788888888888888877776
Q ss_pred HHHH
Q 002878 430 SFEN 433 (872)
Q Consensus 430 e~E~ 433 (872)
....
T Consensus 267 ~~N~ 270 (629)
T KOG0963|consen 267 KANS 270 (629)
T ss_pred hhhh
Confidence 5543
No 81
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.29 E-value=0.24 Score=49.81 Aligned_cols=42 Identities=31% Similarity=0.375 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 002878 407 KIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEME 448 (872)
Q Consensus 407 ~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~ 448 (872)
++++...+..++..-..+..+...++.+.+.|..++..|+.+
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444333
No 82
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.28 E-value=0.74 Score=55.18 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=16.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002878 347 FFSIASEKDALQLVNQELNSKIIKLQKTQ 375 (872)
Q Consensus 347 ~~~l~~e~~~L~~el~eL~~ql~~L~~~~ 375 (872)
+..+..+...|+.+++.+..+++.--.+.
T Consensus 507 I~KIl~DTr~lQkeiN~l~gkL~RtF~v~ 535 (594)
T PF05667_consen 507 IEKILSDTRELQKEINSLTGKLDRTFTVT 535 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344555666666666666666444333
No 83
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.24 E-value=0.89 Score=55.17 Aligned_cols=90 Identities=21% Similarity=0.134 Sum_probs=50.5
Q ss_pred HHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 91 AKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 91 ~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
+.+..+|.+++..+..+...++.+.++++.|......+... +..++.+...+..++.++.-.-.-+-..+.++
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~-------~~~~e~~~~~lr~e~ke~K~rE~rll~dysel 102 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKE-------CEDLELERKRLREEIKEYKFREARLLQDYSEL 102 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45555565655555555555555555555555555554444 44444444444444444433334444555677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002878 171 EEIITKREKELEDLKIE 187 (872)
Q Consensus 171 e~~l~~~~~eLe~Lk~~ 187 (872)
+.....++..+..|+..
T Consensus 103 EeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 103 EEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777777664
No 84
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.21 E-value=1.3 Score=56.54 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=26.8
Q ss_pred CCCCcccccCchHHHHHhhhhcCC-CCccccCCcCccc---ccccccccCCCCc
Q 002878 754 DPPFLNEAQTPVSQLLKKVENVNT-GSMISIPKHHKKV---THHEYEVETSNGR 803 (872)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~ 803 (872)
|-||+.--.--+..++.-++++.. |.+|.++.||.-+ .-|-+.|+-.+|+
T Consensus 848 DEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i~V~k~~g~ 901 (908)
T COG0419 848 DEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRIRVKKDGGR 901 (908)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEEEEEecCCc
Confidence 666666555555555555666554 5777776555432 2233444444443
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.83 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002878 45 KLTAEKLVKEQASVKTDLEMANS 67 (872)
Q Consensus 45 k~~l~~l~~e~e~lq~el~e~~~ 67 (872)
+..+..-..++++-+.-+++..+
T Consensus 319 keNy~kGqaELerRRq~leeqqq 341 (1118)
T KOG1029|consen 319 KENYEKGQAELERRRQALEEQQQ 341 (1118)
T ss_pred HHhHhhhhHHHHHHHHHHHHHHH
Confidence 34444445555555554444433
No 86
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.18 E-value=0.72 Score=53.05 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHH-HHHHHHHHHHHHHhHHHHHHH
Q 002878 72 SMEHVRILEEKLQNAV-----NENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTET-LQHLASQVQDAEKNKEFFEDK 145 (872)
Q Consensus 72 ~~~~i~lleeri~~l~-----~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~-l~~l~~~i~~~E~~~~~lE~e 145 (872)
..+.|.-+++++..+. .++.+++..- -.-+-+..|..+...+++++.. +..+...+=++|. -
T Consensus 26 ~~~rI~~LEe~K~el~~lPv~dEi~kVK~L~-----L~GQTe~~Fe~Wrq~W~di~~~~fadvEE~lfeAE~-------~ 93 (570)
T COG4477 26 NYQRIDKLEERKNELLNLPVNDEISKVKKLH-----LTGQTETKFEEWRQKWDDIVTNSFADVEEHLFEAEA-------L 93 (570)
T ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHhcCc-----ccCccHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH-------h
Confidence 3445555666665554 3333333321 1233456777777777777663 3344333333332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002878 146 ISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRL 225 (872)
Q Consensus 146 l~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~ 225 (872)
.. .-....++..+++....+...++.+.+....+..|...-+.-...+.........+.+++-.=..++=..+....+
T Consensus 94 ~d--kfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk 171 (570)
T COG4477 94 AD--KFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEK 171 (570)
T ss_pred hh--hhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 22 2223445566677777777777777777777776666444333322222222233333333333334444444444
Q ss_pred HHHHHhhHHHHHH
Q 002878 226 ETESLNSKVEEMH 238 (872)
Q Consensus 226 el~~l~~el~~~~ 238 (872)
.+.++...++++.
T Consensus 172 ~Le~i~~~l~qf~ 184 (570)
T COG4477 172 KLENIEEELSQFV 184 (570)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 87
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.18 E-value=1.4 Score=56.24 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=10.2
Q ss_pred CcCcccccccccccCCCCc
Q 002878 785 KHHKKVTHHEYEVETSNGR 803 (872)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~ 803 (872)
+.=-=|||++.=.+..+=+
T Consensus 874 ~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 874 RQIIIISHVEELKERADVR 892 (908)
T ss_pred CeEEEEeChHHHHHhCCeE
Confidence 3333466666655555554
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.95 Score=53.80 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002878 272 FEKKLVTSIREIKNLEGFVHVFAAQLVDL 300 (872)
Q Consensus 272 ~~~~l~~le~e~~~l~~~l~~~~~~l~el 300 (872)
+.+....++.+++.|...++.+..++.++
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33444455555566666555555555444
No 89
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=1 Score=54.12 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002878 77 RILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSS 149 (872)
Q Consensus 77 ~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~ 149 (872)
..+.+....+.+....+......+...+..+..+++...+.++.+..+++.+...+...-..--.|...+..+
T Consensus 51 ~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~ 123 (698)
T KOG0978|consen 51 DELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEA 123 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455556666666666666666667777777777776666666555544433333444444433
No 90
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.14 E-value=0.38 Score=58.74 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002878 351 ASEKDALQLVNQELNSKIIKLQKTQES 377 (872)
Q Consensus 351 ~~e~~~L~~el~eL~~ql~~L~~~~~~ 377 (872)
......=..+|.+|+.+|.++-.+.++
T Consensus 635 ~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 635 QGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 344455567788888888888777665
No 91
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.11 E-value=0.66 Score=51.22 Aligned_cols=71 Identities=23% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002878 80 EEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSM 150 (872)
Q Consensus 80 eeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~ 150 (872)
++++..+......+-.....+......+..++..+..+.+.+...+......+..++.-|+.+..+...+.
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555566666666666677776666666666777777777766554444
No 92
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.98 E-value=0.72 Score=49.45 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHH
Q 002878 459 EMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLL 502 (872)
Q Consensus 459 el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i 502 (872)
++..+.+..+.+...+...+.+..+|+.++...+-.+.+....+
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~l 181 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLAL 181 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555666666677666666555555444333
No 93
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.93 E-value=1.6 Score=52.77 Aligned_cols=51 Identities=6% Similarity=0.075 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 585 ADKTIGEMERKCDQ----KLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMN 635 (872)
Q Consensus 585 le~~l~e~e~r~~~----~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~ 635 (872)
+...+.=+..-|.. .+-++..-+...+.-+..-|+.+..+..+.+.-.+-.
T Consensus 733 i~k~l~yfq~m~s~hl~~qllde~q~~~d~iasl~A~ld~~~vnt~r~~~flQe~ 787 (1243)
T KOG0971|consen 733 ITKALKYFQHLYSIHLAEQLLDETQQLADHIASLQAALDCMSVNTGRLRAFLQEG 787 (1243)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 44444444444433 4455666666667777777777777666655444433
No 94
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.89 E-value=1.9 Score=52.97 Aligned_cols=178 Identities=15% Similarity=0.200 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHhhHhhHHHHHHHHHhHhhhh
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV----NEN-AKLKVKQKEDEKLWKGLESKFSSTK 115 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~----~~~-~~L~~~i~el~~~~~~Le~k~s~~k 115 (872)
...++.+++....+--.+...+..++..+..+..++....+..+... ..+ ..+.....+++.++..+...+....
T Consensus 26 ~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~ 105 (769)
T PF05911_consen 26 AASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESA 105 (769)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666777777788888888888876655544333 222 2334444477778888888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 116 TLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLY 195 (872)
Q Consensus 116 ~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~ 195 (872)
++...|...+..-..-|.++...+...+.++..+...++.+.++.+.|.-.+-.+...+.-+..+.+--++..+-..+..
T Consensus 106 ~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqh 185 (769)
T PF05911_consen 106 AENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQH 185 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88888888888888888888888888898888999999999998888888887777777777777776677777777777
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHH
Q 002878 196 RDECCRTSNLMDKNDAMIKKLEV 218 (872)
Q Consensus 196 ~~~~~~~~~l~~e~~~l~e~~Ee 218 (872)
+.....+..++.+|..++--...
T Consensus 186 le~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 186 LESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777788888888887665543
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.85 E-value=0.57 Score=49.34 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhh--h
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTL--S 118 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~--~ 118 (872)
++.+..++..+.......+..+..+...++.++..+..++.....+.+...++...+.+...++...+.+++..+.. +
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~ 91 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555443332 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002878 119 DQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQ 156 (872)
Q Consensus 119 ~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el 156 (872)
++|...+..+..++..++..+..+...+..++..+..+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444444444444444443333333
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.83 E-value=0.28 Score=47.84 Aligned_cols=57 Identities=12% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 134 DAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 134 ~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
.++..+..++.++......+...+..+.+++.+.+..+-.+..+..+....-..+++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555556666666666666666555555555555555555444444444444443
No 97
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.78 E-value=0.3 Score=47.61 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002878 127 HLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKI 186 (872)
Q Consensus 127 ~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~ 186 (872)
.+...|.-++.++...+..+.....++.++......+-++...++.........++.+..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444333333333333333
No 98
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.72 E-value=2.1 Score=52.40 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=21.1
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 110 KFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLS 164 (872)
Q Consensus 110 k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~ 164 (872)
.++.++.++++|...+..+......--..+..+|..|.+-......+..+|.+.+
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333333222333333333333344444444443333
No 99
>PF13514 AAA_27: AAA domain
Probab=96.69 E-value=3.8 Score=53.54 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKK 71 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek 71 (872)
...+..+..++......+..++..+..+..++..
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 274 (1111)
T PF13514_consen 241 AERLEQLEEELAEAQAQLERLQEELAQLEEELDA 274 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777888888888888888887777777554
No 100
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.64 E-value=2.2 Score=50.14 Aligned_cols=132 Identities=18% Similarity=0.217 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHH
Q 002878 420 EIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKE 499 (872)
Q Consensus 420 ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~ 499 (872)
.-..+..++..++..+..++..+..........+..++.+......++.-+=.++++.+.++..++.+++.|...+...+
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444555555555555555444444444455555555555666666666666677777777777777766664422
Q ss_pred HHHhcc--------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 500 QLLLQH--------NDKEKKLEDQITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRH 551 (872)
Q Consensus 500 ~~i~~~--------~~~~~~le~~L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~ 551 (872)
...... ......++..|..+-..|..++....+.......++..+..++...
T Consensus 270 ~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~ 329 (629)
T KOG0963|consen 270 SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAK 329 (629)
T ss_pred hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 0011124445555555555444444444343444444444444433
No 101
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.57 E-value=1.5 Score=47.38 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=17.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 002878 237 MHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREI 283 (872)
Q Consensus 237 ~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~ 283 (872)
++..+..+.++....-.....+=++...+..+.|.|-..+-.+....
T Consensus 177 ~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~ 223 (294)
T COG1340 177 IHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKI 223 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333334333344433333333333
No 102
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.55 E-value=1.2 Score=46.07 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=31.5
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHH
Q 002878 441 KISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEK 498 (872)
Q Consensus 441 ~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~ 498 (872)
++...+.++...+...+.++..+...+....-.+..|+..++....++..|...++++
T Consensus 144 kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 144 KLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555556666666666666666666553
No 103
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.51 E-value=1.6 Score=47.10 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 227 TESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFA 294 (872)
Q Consensus 227 l~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~ 294 (872)
+..+..+.+.++.++-.+-...+.+.+....+-.....+....+.+-..+..+..++.++...+..+.
T Consensus 181 i~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 181 IQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433333333333334444444444455555555554444443
No 104
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.36 E-value=2.9 Score=48.34 Aligned_cols=156 Identities=10% Similarity=0.145 Sum_probs=87.2
Q ss_pred ccccCccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002878 19 SRSAKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQK 98 (872)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~ 98 (872)
.|-+..+--.-|..-|-++...+..+...+-..+.-.++.+.. .++..+..+...+.+.++.+..+...++.|-....
T Consensus 58 ~GQTe~~Fe~Wrq~W~di~~~~fadvEE~lfeAE~~~dkfrF~--kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEe 135 (570)
T COG4477 58 TGQTETKFEEWRQKWDDIVTNSFADVEEHLFEAEALADKFRFN--KAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEE 135 (570)
T ss_pred cCccHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhhhhhH--HhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334455666666666666666665555544444433 66666777888888888888888877777777766
Q ss_pred hhHHHHHHHHHhHhhhhhhhH----HHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Q 002878 99 EDEKLWKGLESKFSSTKTLSD----QLTETLQHLASQVQDAEKNKEFFEDKI-----SSSMNAVDCQKQQMDHLSLKLGS 169 (872)
Q Consensus 99 el~~~~~~Le~k~s~~k~~~~----~l~~~l~~l~~~i~~~E~~~~~lE~el-----~e~~~kl~el~rql~dl~akLee 169 (872)
....++......++.+...+. .+...+..+.+++..++.....|...- -++..-+..++..+..+.+-.+.
T Consensus 136 kN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~ 215 (570)
T COG4477 136 KNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMER 215 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555554432 233344444444455554444444321 12344455555555555555555
Q ss_pred HHHHHHH
Q 002878 170 AEEIITK 176 (872)
Q Consensus 170 ~e~~l~~ 176 (872)
.=+.+..
T Consensus 216 IP~L~~e 222 (570)
T COG4477 216 IPSLLAE 222 (570)
T ss_pred HHHHHHH
Confidence 5444444
No 105
>PRK09039 hypothetical protein; Validated
Probab=96.34 E-value=0.67 Score=52.01 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 141 FFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREER 191 (872)
Q Consensus 141 ~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~ 191 (872)
.|..++.....+++.++.+++++..-+..-.......+..+..++.++...
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a 93 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAA 93 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455666666666777777777766666555555555666666666555533
No 106
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.17 E-value=4.6 Score=48.79 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002878 58 VKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKE 99 (872)
Q Consensus 58 lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~e 99 (872)
++.+...+..++..+..++..+.+++.........|...+.+
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555544444444444443
No 107
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.14 E-value=2 Score=44.41 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 002878 459 EMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQN 493 (872)
Q Consensus 459 el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~ 493 (872)
+...+..++..+.+.+.+|-.+.+.+..-+..++.
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555444444433
No 108
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.05 E-value=7.2 Score=50.04 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 002878 456 FHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQF 488 (872)
Q Consensus 456 lq~el~~~eeele~lrk~l~~Le~kiesLe~El 488 (872)
+...+..+..+++..++.+..|+-.-.-...-|
T Consensus 636 ~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~I 668 (1294)
T KOG0962|consen 636 YLDLLERLKGEIEKARKDLAMLQGRSALYRKFI 668 (1294)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 445555666666666666665554444444433
No 109
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.02 E-value=2.9 Score=45.20 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHH
Q 002878 42 ANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQL 121 (872)
Q Consensus 42 ~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l 121 (872)
+.+...+......+...+..+..+...+..+...+..+..+..........+.........+-..|...+..+...+.++
T Consensus 27 e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 27 EDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555555555555555555555554544555544444445555555555555555555
Q ss_pred HHHHHHHH
Q 002878 122 TETLQHLA 129 (872)
Q Consensus 122 ~~~l~~l~ 129 (872)
...+..+.
T Consensus 107 ~~~~~~l~ 114 (264)
T PF06008_consen 107 IEQVESLN 114 (264)
T ss_pred HHHHHHhC
Confidence 55554443
No 110
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.01 E-value=3.7 Score=46.43 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 352 SEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSF 431 (872)
Q Consensus 352 ~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~ 431 (872)
.+.+.+..++..|..+|.+..+.- ..+..++.+.+.|......+......+.....+--..|..+..++..-
T Consensus 271 ~~i~~lk~~n~~l~e~i~ea~k~s--------~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~k 342 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQEAMKIS--------QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELK 342 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344555555666655555544332 222233333333333333333333333333333333344444444444
Q ss_pred HHHHHHHHHHHHhHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHhHHHHHHHHHHH
Q 002878 432 ENKLQDQLLKISSLEMENK-------------ENMEKFHAEMQKKEEEINNLKQEHE----KKEMLVDSIEKQFCQLQNI 494 (872)
Q Consensus 432 E~~~e~Le~~l~~Le~~~~-------------~~~~~lq~el~~~eeele~lrk~l~----~Le~kiesLe~El~~Lk~~ 494 (872)
+++++.|...++.|...+. .-+.+|..++..+..+.+.+++.+- ..+..++++++-+..+...
T Consensus 343 Eeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl 422 (622)
T COG5185 343 EEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSL 422 (622)
T ss_pred HHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444444444333321 1144456666666666666666665 3444555555544444333
No 111
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.96 E-value=2.3 Score=43.64 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=60.6
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhH
Q 002878 226 ETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSL 305 (872)
Q Consensus 226 el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~ 305 (872)
.+..+..++.++...+..+.-+...|......-++++..+.....+++.-+.....+++.|...+..+.....+++++..
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666776777777777777778888888888777888888888888888888888877777666665554
Q ss_pred H
Q 002878 306 T 306 (872)
Q Consensus 306 ~ 306 (872)
.
T Consensus 93 ~ 93 (194)
T PF15619_consen 93 D 93 (194)
T ss_pred H
Confidence 3
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.86 E-value=3.5 Score=44.91 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 002878 216 LEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVT 278 (872)
Q Consensus 216 ~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~ 278 (872)
.-.++.++...+..|+.++.....+...-.++|..|...+..+++....+-.+++++...+..
T Consensus 204 cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 204 CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334445555556666555555555555555666666666666665555555544444444443
No 113
>PF13514 AAA_27: AAA domain
Probab=95.85 E-value=9.6 Score=49.86 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=26.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 37 TSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHV 76 (872)
Q Consensus 37 ~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i 76 (872)
+-..+..+......+...+..++..+......++.+...+
T Consensus 344 ~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 383 (1111)
T PF13514_consen 344 ARERIRELLQEREQLEQALAQARRELEEAERELEQLQAEL 383 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777777777777777766666664
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.84 E-value=6.9 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 271 SFEKKLVTSIREIKNLEGFVHVFAA 295 (872)
Q Consensus 271 ~~~~~l~~le~e~~~l~~~l~~~~~ 295 (872)
.+...+..+..++..+...+..+..
T Consensus 432 ~l~~~l~~~~~~~~~~~~~~~~~~~ 456 (650)
T TIGR03185 432 EAQNELFRSEAEIEELLRQLETLKE 456 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 115
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=5 Score=45.35 Aligned_cols=171 Identities=17% Similarity=0.241 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 119 DQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQ---MDHLSLKLGSAEEIITKREKELEDLKIEREERDKLY 195 (872)
Q Consensus 119 ~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rq---l~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~ 195 (872)
-.+.....+..-.+..++..+..++.+.++++..+.-..+- +.+-.+-|..+...+......+..++.++++-...
T Consensus 244 eel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~p- 322 (521)
T KOG1937|consen 244 EELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQP- 322 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 34444444444555566666666665555555322222222 12223334445555555566666666666654322
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc--HHHHH
Q 002878 196 RDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMS--RDSFE 273 (872)
Q Consensus 196 ~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e--~d~~~ 273 (872)
+...+-.+++.+...-.+... + .++++++.+|..+.+++........+|-++...+-.. ...|.
T Consensus 323 ---------ll~kkl~Lr~~l~~~e~e~~e-~----~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~yt 388 (521)
T KOG1937|consen 323 ---------LLQKKLQLREELKNLETEDEE-I----RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYT 388 (521)
T ss_pred ---------HHHHHHHHHHHHhcccchHHH-H----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHH
Confidence 122223333333322212111 2 3455566666666666665555555555555554222 23466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q 002878 274 KKLVTSIREIKNLEGFVHVFAAQLVDLDKQS 304 (872)
Q Consensus 274 ~~l~~le~e~~~l~~~l~~~~~~l~eldkk~ 304 (872)
-.+..+...+++...++......-.+|.|+.
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreLqkq~ 419 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETRELQKQE 419 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555555555544444454444
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=8 Score=46.82 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002878 354 KDALQLVNQELNSKIIKLQK 373 (872)
Q Consensus 354 ~~~L~~el~eL~~ql~~L~~ 373 (872)
.+.+.-.+.+....+..|..
T Consensus 913 qee~~v~~~~~~~~i~alk~ 932 (970)
T KOG0946|consen 913 QEELLVLLADQKEKIQALKE 932 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333333
No 117
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.44 E-value=11 Score=47.72 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002878 121 LTETLQHLASQVQDAEKNKEFFEDKISSSM 150 (872)
Q Consensus 121 l~~~l~~l~~~i~~~E~~~~~lE~el~e~~ 150 (872)
....+......+..++...+.++.++..++
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444443333
No 118
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.39 E-value=3.5 Score=41.62 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=36.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 234 VEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFA 294 (872)
Q Consensus 234 l~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~ 294 (872)
.......++.+.+.+......-...++.+..|+...|+|...+......|..+...|..+-
T Consensus 139 ~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 139 EEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555545555556666666777777777777776666766666665543
No 119
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.39 E-value=6.5 Score=44.72 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 002878 245 EDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFV 290 (872)
Q Consensus 245 ~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l 290 (872)
.++...|...+.++++++..+...+-.....+..+.+.+.++...+
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 3333333333333444333333333333333333333333333333
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.38 E-value=2.8 Score=40.54 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHH
Q 002878 46 LTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETL 125 (872)
Q Consensus 46 ~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l 125 (872)
..+.......+.+...+..+.+.++..+.....+.-...+....+..|..++..+...+..|+..+..+..+-..|...+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555554444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHhH
Q 002878 126 QHLASQVQDAEKNK 139 (872)
Q Consensus 126 ~~l~~~i~~~E~~~ 139 (872)
.....+|..++...
T Consensus 90 q~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 90 QKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444433
No 121
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.32 E-value=12 Score=47.40 Aligned_cols=40 Identities=33% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHH
Q 002878 90 NAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLA 129 (872)
Q Consensus 90 ~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~ 129 (872)
.+-+...+++...++...+.++..+.+.+.++..++..+.
T Consensus 489 ~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 489 KALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666666666666666666653
No 122
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=12 Score=46.95 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002878 115 KTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIIT 175 (872)
Q Consensus 115 k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~ 175 (872)
+....++...+..+.+.|......+...+.++.....+.....+++..+...+...+..+.
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~ 286 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLA 286 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444444444444444444444444444444444
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.12 E-value=5.6 Score=42.50 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 231 NSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHV 292 (872)
Q Consensus 231 ~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~ 292 (872)
+.++.++......++.+|+.+......+.+....++.+++.....+..++.++..+..+|..
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444555555555555544443
No 124
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.09 E-value=4.7 Score=41.42 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 56 ASVKTDLEMANSKLKKSMEHVRIL 79 (872)
Q Consensus 56 e~lq~el~e~~~kiek~~~~i~ll 79 (872)
..+++++..+..+++.+..+..++
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~L 38 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTL 38 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.90 E-value=4 Score=39.57 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002878 65 ANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFED 144 (872)
Q Consensus 65 ~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~ 144 (872)
...++.+....-..++.++.++..++.........+......-...+..++..+..++..+..+...+.++-.++..+..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554443333333322222222222223333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002878 145 KISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 145 el~e~~~kl~el~rql~dl~akL 167 (872)
.+...+.++.++.....++..-+
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 44444444444443333333333
No 126
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.80 E-value=12 Score=44.75 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=24.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002878 135 AEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDL 184 (872)
Q Consensus 135 ~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~L 184 (872)
+......++..+..+..........+..+....+.++..+++...+|+.-
T Consensus 167 L~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q 216 (739)
T PF07111_consen 167 LTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQ 216 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33334444444444444444444555555555555555555555555443
No 127
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.67 E-value=6.6 Score=41.01 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=24.9
Q ss_pred hHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 317 HYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKL 371 (872)
Q Consensus 317 ~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L 371 (872)
.|...|...++++.-|....+..-.++..++..+...+..|+.+++.|......+
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~ 78 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERN 78 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455455555444443333333333444444444455555555544444433
No 128
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.65 E-value=5.7 Score=40.19 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=17.1
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002878 226 ETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEK 260 (872)
Q Consensus 226 el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEK 260 (872)
++..+|.+++-++-++...++.+..+..++..+++
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq 39 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQ 39 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555554445555544444444443
No 129
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.62 E-value=1.7 Score=42.70 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002878 170 AEEIITKREKELEDLKIER 188 (872)
Q Consensus 170 ~e~~l~~~~~eLe~Lk~~l 188 (872)
....+..+..++..|+..+
T Consensus 131 ~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555543
No 130
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.57 E-value=14 Score=44.33 Aligned_cols=58 Identities=22% Similarity=0.403 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q 002878 585 ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAE 648 (872)
Q Consensus 585 le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~~a~~~~el~~~q 648 (872)
++..+.+++.++-..|++ +|.+|.+.+-||..++..+.+ ..+++...+.+ ..|+.++|
T Consensus 576 lqekvsevEsrl~E~L~~----~E~rLNeARREHtKaVVsLRQ-~qrqa~reKer-~~E~~~lq 633 (739)
T PF07111_consen 576 LQEKVSEVESRLREQLSE----MEKRLNEARREHTKAVVSLRQ-IQRQAAREKER-NQELRRLQ 633 (739)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhch-hHHHHHHH
Confidence 444445555554444433 356666667777666664432 23344433332 23444444
No 131
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.54 E-value=9.5 Score=42.30 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 227 TESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFA 294 (872)
Q Consensus 227 l~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~ 294 (872)
.+..+++++....+-+-.+.++..+...+.+...+...+.....++...|..+-.++..|..+...+.
T Consensus 104 r~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~ 171 (499)
T COG4372 104 REAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQ 171 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555544444444444444455555555555444444433
No 132
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.48 E-value=12 Score=43.33 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH
Q 002878 309 EKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRL 388 (872)
Q Consensus 309 ~k~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~ 388 (872)
.++..+...+..++.-++..++...+.....++-+.... ..+...+..+...+.+|......+...+......
T Consensus 308 sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEks-------qile~sv~~l~~~lkDLd~~~~aLs~rld~qEqt 380 (531)
T PF15450_consen 308 SKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKS-------QILEDSVAELMRQLKDLDDHILALSWRLDLQEQT 380 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 344445555555555555555555555444444433222 2334444444444444444444444333333334
Q ss_pred HHHHHHHHHHH
Q 002878 389 AGEKISRLESE 399 (872)
Q Consensus 389 le~~i~~Le~e 399 (872)
+..++..+..+
T Consensus 381 L~~rL~e~~~e 391 (531)
T PF15450_consen 381 LNLRLSEAKNE 391 (531)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 133
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.46 E-value=9.8 Score=42.12 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------hhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002878 607 AKQQLKRIQEEHAAIVISIQQEYDKKEMNLKA---------EHIGELKCAELQAENELREKTTKLKSEHEV 668 (872)
Q Consensus 607 ~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~~a---------~~~~el~~~q~~~~~~~~~~~~~~~~~~e~ 668 (872)
++--|.-++.|+..+.++++-.+|..++.+.. ..=.||.-++-+++-||+-+-+.|+-+++.
T Consensus 510 LEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteA 580 (593)
T KOG4807|consen 510 LEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEA 580 (593)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 44446667777777777777777777776644 234799999999999999988888887653
No 134
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.36 E-value=9.1 Score=41.34 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 231 NSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVF 293 (872)
Q Consensus 231 ~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~ 293 (872)
...+.+....|.++++.+..........+.--..-+.-+.++..++..+......+...|...
T Consensus 184 ~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a 246 (264)
T PF06008_consen 184 RDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEA 246 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333333332111122222344444444444444444444433
No 135
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=16 Score=44.31 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002878 124 TLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIERE 189 (872)
Q Consensus 124 ~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~le 189 (872)
....++..+..+-..++.+..+++.+.....+++.+..++.+++....+..+++..++.-++.+++
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444555555555555555555555555555555665555555555556666666665555
No 136
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.31 E-value=9.3 Score=41.26 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002878 173 IITKREKELEDLKIEREER 191 (872)
Q Consensus 173 ~l~~~~~eLe~Lk~~lee~ 191 (872)
.|..+..++..++.+..+.
T Consensus 7 eia~LrlEidtik~q~qek 25 (305)
T PF14915_consen 7 EIAMLRLEIDTIKNQNQEK 25 (305)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3444445555555544443
No 137
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.28 E-value=6.9 Score=39.64 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 156 QKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLN 231 (872)
Q Consensus 156 l~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~el~~l~ 231 (872)
+++.-..+.+..+.+.....+...+.+.++....+......++.+. .+.|..++-+.+..+.+....+..+.
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q----l~~~e~l~~~~da~l~e~t~~i~eL~ 164 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ----LCEFESLICQRDAILSERTQQIEELK 164 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3333333344444444444444444444444443332222222222 23444444444444443333333333
No 138
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.28 E-value=13 Score=42.99 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=21.8
Q ss_pred HHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002878 103 LWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFED 144 (872)
Q Consensus 103 ~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~ 144 (872)
.|.+++.-...+++++++|.+....+....-.+-.++..+..
T Consensus 14 ~~~Ql~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~ 55 (531)
T PF15450_consen 14 RWKQLEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRA 55 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666665555554444444444444433
No 139
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.18 E-value=12 Score=41.87 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHH
Q 002878 540 MLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEME 593 (872)
Q Consensus 540 ~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e 593 (872)
.+..++.++..+..++. ..+..+.+++.++..+...+..+.... +..+|.+++
T Consensus 210 eL~~lr~eL~~~~~~i~-~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIE-AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554544444 444555555555555555555555544 444555444
No 140
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.06 E-value=14 Score=42.22 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=5.1
Q ss_pred hhhhccccCcccc
Q 002878 15 FKSLSRSAKSFSF 27 (872)
Q Consensus 15 ~~~~~~~~~~~~~ 27 (872)
|.-|+|.....+|
T Consensus 19 ~~~l~~~~~~~s~ 31 (420)
T COG4942 19 ASLLSAAVLAAAF 31 (420)
T ss_pred HHHHHhcccccch
Confidence 3334444333333
No 141
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.85 E-value=15 Score=41.91 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 002878 384 EECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKK 463 (872)
Q Consensus 384 ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~ 463 (872)
+-+..|+..+..|-.+.-.+.-.+.+++..+..|..-+......+.+..+..+.|+.++.++...+..+-+++..+++.+
T Consensus 362 DiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqK 441 (527)
T PF15066_consen 362 DIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQK 441 (527)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 34444445555554444444555777888888888888888888888888888888888888777777777777666654
Q ss_pred H
Q 002878 464 E 464 (872)
Q Consensus 464 e 464 (872)
.
T Consensus 442 n 442 (527)
T PF15066_consen 442 N 442 (527)
T ss_pred h
Confidence 3
No 142
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.75 E-value=6.7 Score=37.65 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHH
Q 002878 42 ANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQL 121 (872)
Q Consensus 42 ~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l 121 (872)
..+..++..+..........+..+...+............++..--...+..-..+..+......+...+..++...+..
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333332223333333333333334444444444444443
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 122 TETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 122 ~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
...+... ...++.....|+.++..+...+++++.|-.-|..++
T Consensus 86 ~~~l~~~---e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 86 KAELEES---EASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 233455566777777777777777666644444444
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.61 E-value=14 Score=40.80 Aligned_cols=122 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 002878 385 ECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFE-----NKLQDQLLKISSLEMENKENMEKFHAE 459 (872)
Q Consensus 385 e~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E-----~~~e~Le~~l~~Le~~~~~~~~~lq~e 459 (872)
.+....++...|..++..|...+.++...+.-|...+......-.... ...+.+..++..+... ...|+.+
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q----~~qLe~d 148 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ----IEQLERD 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH----HHHHHHH
Confidence 344445556666666666655555555554444444443222111110 1222333333333332 3345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHH
Q 002878 460 MQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQ 520 (872)
Q Consensus 460 l~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr 520 (872)
++.+.++.+++..+.+....++..|..|++.+- ..+..++.++++-|.+.+
T Consensus 149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L----------~g~~~rivDIDaLi~ENR 199 (319)
T PF09789_consen 149 LQSLLDEKEELVTERDAYKCKAHRLNHELNYIL----------NGDENRIVDIDALIMENR 199 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCCcccHHHHHHHHH
Confidence 666666777777777777777777777665543 334455666766665554
No 144
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=93.31 E-value=14 Score=43.13 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=24.5
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 29 SRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLK 70 (872)
Q Consensus 29 ~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kie 70 (872)
-+|.||||.|+.--.-+.-+..-.+..+-+..++.....+|.
T Consensus 278 ~~p~~~svpy~~a~~n~ril~sstes~e~L~qqV~qs~EKIa 319 (518)
T PF10212_consen 278 KKPCPESVPYEEALANRRILLSSTESREGLAQQVQQSQEKIA 319 (518)
T ss_pred cCCCCccCChHHHHhhhHHHhhhHHhHHHHHHHHHHHHHHHH
Confidence 469999999998666555554444444444444444333333
No 145
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.25 E-value=15 Score=40.16 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002878 353 EKDALQLVNQELNSKIIK 370 (872)
Q Consensus 353 e~~~L~~el~eL~~ql~~ 370 (872)
.+..|...+..+...+..
T Consensus 91 ~N~~L~~~~~~le~~L~~ 108 (306)
T PF04849_consen 91 QNQDLSERNEALEEQLGA 108 (306)
T ss_pred hcccHHHHHHHHHHHHHH
Confidence 334444444444444433
No 146
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.21 E-value=9.2 Score=37.54 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHH
Q 002878 57 SVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTE 123 (872)
Q Consensus 57 ~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~ 123 (872)
.+...+..+...+..+...+.-++.++..+......+......+...+..+.......+.++..+..
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444333333333333333333333333333333333333
No 147
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.14 E-value=14 Score=39.48 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 002878 432 ENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNI 494 (872)
Q Consensus 432 E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~ 494 (872)
+.++..+..++.....++..+..--+.+...+.-.|..+.+++. .-.++-+.|++.+...
T Consensus 87 q~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq---~lk~~qqdEldel~e~ 146 (258)
T PF15397_consen 87 QQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQ---QLKDSQQDELDELNEM 146 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444556666666666666633 3333444444444333
No 148
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.11 E-value=12 Score=38.68 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 002878 421 IDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQ 490 (872)
Q Consensus 421 i~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~ 490 (872)
+..+..++..+.-+.+.+..++..++.+-..+..++..-+.++......-.- -|++++..+...++.
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~---lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNL---LLEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3334444444444444555555555555444444444444333322221111 255555555554433
No 149
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.09 E-value=18 Score=40.45 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhHHHHHHHHHhHhhhhhhhHHHHHHHH
Q 002878 54 EQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVK-QKEDEKLWKGLESKFSSTKTLSDQLTETLQ 126 (872)
Q Consensus 54 e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~-i~el~~~~~~Le~k~s~~k~~~~~l~~~l~ 126 (872)
.++-.+.-+.++.+.|.....-+..++..+..-+ =-|-.+ ..........+...|...+.-+.-....+|
T Consensus 69 ~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~n---PpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~W 139 (325)
T PF08317_consen 69 MLELYQFSCRELKKYISEGRQIFEEIEEETYESN---PPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMW 139 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555544444444444443322 111111 112222234455555555555554444443
No 150
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.79 E-value=15 Score=43.16 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=56.8
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHhhHHHH
Q 002878 29 SRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVR----ILEEKLQNAVNENAKLKVKQKEDEKLW 104 (872)
Q Consensus 29 ~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~----lleeri~~l~~~~~~L~~~i~el~~~~ 104 (872)
+=|+-+.+|-|....++..+..|+...+.++=++.-+....+.-.+.|. .++++.+++...-+-|..++-. .
T Consensus 94 ~~p~~~~~s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqells----r 169 (861)
T KOG1899|consen 94 PSPSMSTVSCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLS----R 169 (861)
T ss_pred cCCCCCCccCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHh----h
Confidence 4456667777888888888877776665555444444443333322222 2333444444333444444333 3
Q ss_pred HHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002878 105 KGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFE 143 (872)
Q Consensus 105 ~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE 143 (872)
..|+++.-.+-++++.|.-.+..+.....+.|+..+.-+
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se 208 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSE 208 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHH
Confidence 556666655555565555555554333333333333333
No 151
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.76 E-value=0.68 Score=47.65 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=22.1
Q ss_pred HHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 104 WKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQ 159 (872)
Q Consensus 104 ~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rq 159 (872)
+..+......+...+.++...+......+..+..+...+.-+++-+..++..+...
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444443333333333333333333333333333333
No 152
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.42 E-value=11 Score=38.05 Aligned_cols=99 Identities=21% Similarity=0.256 Sum_probs=82.6
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q 002878 31 PSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESK 110 (872)
Q Consensus 31 ~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k 110 (872)
..+|+.+.-.|+.++.+...+...++.-+.++..+...+......+....++...+......+...+......+..+...
T Consensus 34 ~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~ 113 (177)
T PF13870_consen 34 ELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREE 113 (177)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888889999999999999999999999999999888888888888999888888888888888888888778777
Q ss_pred HhhhhhhhHHHHHHHHHHH
Q 002878 111 FSSTKTLSDQLTETLQHLA 129 (872)
Q Consensus 111 ~s~~k~~~~~l~~~l~~l~ 129 (872)
+...+...+.+......+.
T Consensus 114 l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 114 LYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666654
No 153
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.28 E-value=11 Score=36.16 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=5.2
Q ss_pred HHHHhHHhHHHHH
Q 002878 476 KKEMLVDSIEKQF 488 (872)
Q Consensus 476 ~Le~kiesLe~El 488 (872)
.+..+++.|..+.
T Consensus 109 ~~~~r~~dL~~QN 121 (132)
T PF07926_consen 109 ELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 154
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=92.00 E-value=18 Score=37.91 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=9.8
Q ss_pred CCCCCCCChhhHHHH
Q 002878 30 RPSTDSLTSGSFANL 44 (872)
Q Consensus 30 ~~~~~~~~~~~l~~l 44 (872)
-|.|-+.+|+.++.+
T Consensus 65 ~~~~s~l~~~~Leel 79 (254)
T KOG2196|consen 65 EPAPSSLTYKTLEEL 79 (254)
T ss_pred CCCchhhhHHHHHHH
Confidence 345557888877654
No 155
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.95 E-value=34 Score=42.88 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=4.5
Q ss_pred HHHHHhhhhcC
Q 002878 766 SQLLKKVENVN 776 (872)
Q Consensus 766 ~~~~~~~~~~~ 776 (872)
...++.+.+++
T Consensus 697 ~~~~~~l~~~~ 707 (754)
T TIGR01005 697 RADAQGISRLN 707 (754)
T ss_pred HHHHHHHHhcC
Confidence 34444444433
No 156
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.89 E-value=23 Score=39.06 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 002878 75 HVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLES 109 (872)
Q Consensus 75 ~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~ 109 (872)
.+.++...++....++.+++.....+..+...+..
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKk 44 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKK 44 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333333333
No 157
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.74 E-value=23 Score=38.71 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 42 ANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQ 84 (872)
Q Consensus 42 ~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~ 84 (872)
..+...+..+..+...++.++...+.+...+...+..+..--.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv 65 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASV 65 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666655555555555544444433333
No 158
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.68 E-value=35 Score=40.63 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMA 65 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~ 65 (872)
+...++..+..++.++..++..+..+
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777776666
No 159
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.60 E-value=4.5 Score=44.36 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=62.8
Q ss_pred cCCCCCCC-CCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Q 002878 27 FSSRPSTD-SLTS---GSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEK 102 (872)
Q Consensus 27 ~~~~~~~~-~~~~---~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~ 102 (872)
+|.|.|.| |+|. |.+..++..+.++++.+.+.--..-.+......+.-++.+|..++..+....+.+.....+...
T Consensus 61 SSRRsS~DtSsS~dse~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~ 140 (302)
T PF09738_consen 61 SSRRSSGDTSSSVDSEASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIR 140 (302)
T ss_pred CCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777 3333 4677888888888888777777777777777777777777777777777666666665544433
Q ss_pred HHHHHHHhHhhhhhhhHHHHHHHHH
Q 002878 103 LWKGLESKFSSTKTLSDQLTETLQH 127 (872)
Q Consensus 103 ~~~~Le~k~s~~k~~~~~l~~~l~~ 127 (872)
.+..+...+..+..+++.|..+|..
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433444444444444444444433
No 160
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.50 E-value=30 Score=39.54 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=10.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHH
Q 002878 260 KEKSDLQMSRDSFEKKLVTSIRE 282 (872)
Q Consensus 260 Kek~~Lq~e~d~~~~~l~~le~e 282 (872)
-.+.+|+-.+--+..+|+.|+..
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k 353 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMK 353 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 161
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=34 Score=39.85 Aligned_cols=93 Identities=22% Similarity=0.205 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002878 99 EDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQD-AEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKR 177 (872)
Q Consensus 99 el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~-~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~ 177 (872)
.++.+...|+..+..+..+++++...+..+.++-.. .......-+.-+.+...+-.....++-++...|...+..+...
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~ 126 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNV 126 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777888888888888877777554433 3334445566667777777777777777777777777777766
Q ss_pred HHHHHHHHHHHHHH
Q 002878 178 EKELEDLKIEREER 191 (872)
Q Consensus 178 ~~eLe~Lk~~lee~ 191 (872)
+.+.+.+.....+.
T Consensus 127 q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 127 QEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655554
No 162
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=35 Score=39.78 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHhhHhhHHHHHHHHHhH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEE----KLQNAV----NENAKLKVKQKEDEKLWKGLESKF 111 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~llee----ri~~l~----~~~~~L~~~i~el~~~~~~Le~k~ 111 (872)
+-..++.++.+++..++.++.++...+..+....+....... +-+.+- ..-+-+-.+|.+++..+.++...+
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888888888888777666655432211 111111 112234445556666666666666
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH---HHhHHHHH
Q 002878 112 SSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMN--------------AVDCQKQQMDHLSLK---LGSAEEII 174 (872)
Q Consensus 112 s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~--------------kl~el~rql~dl~ak---Lee~e~~l 174 (872)
...+.+.+.+.....++.......+.++..+.+++.+... +-..++++++.++.. ++.+.-.+
T Consensus 124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhei 203 (772)
T KOG0999|consen 124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEI 203 (772)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHH
Confidence 6666666666665555544445555555555554444332 222233333333321 23344445
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002878 175 TKREKELEDLKIEREERDKL 194 (872)
Q Consensus 175 ~~~~~eLe~Lk~~lee~~k~ 194 (872)
+.+..+++-+..++++...-
T Consensus 204 kRleEe~elln~q~ee~~~L 223 (772)
T KOG0999|consen 204 KRLEEETELLNSQLEEAIRL 223 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555433
No 163
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.04 E-value=34 Score=39.24 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002878 45 KLTAEKLVKEQASVKTDLE 63 (872)
Q Consensus 45 k~~l~~l~~e~e~lq~el~ 63 (872)
..++..+..++..++..+.
T Consensus 80 ~~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 80 EADAAELESQVLRLEAEVA 98 (423)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 164
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.79 E-value=35 Score=39.06 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002878 39 GSFANLKLTAEKLVKEQASVKT 60 (872)
Q Consensus 39 ~~l~~lk~~l~~l~~e~e~lq~ 60 (872)
.++..+..++..+..++..++.
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444443
No 165
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.60 E-value=32 Score=38.33 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=71.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhh
Q 002878 37 TSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKT 116 (872)
Q Consensus 37 ~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~ 116 (872)
|.|-|--+...+.+-.-+++.++-+|..+..++...++.....+-+.+....+......+......+...+...+....-
T Consensus 58 tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ 137 (499)
T COG4372 58 TLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ 137 (499)
T ss_pred HHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666667777788888888888888887777777777777766666666666666666666666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002878 117 LSDQLTETLQHLASQVQDAEKNKEFFEDKI 146 (872)
Q Consensus 117 ~~~~l~~~l~~l~~~i~~~E~~~~~lE~el 146 (872)
++..++.+-..+...+..+-.....++.+.
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~ 167 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQA 167 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555555555444444433
No 166
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.45 E-value=37 Score=40.14 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 002878 179 KELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVT 219 (872)
Q Consensus 179 ~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee 219 (872)
.++..+..++......+......+..+......+...+..+
T Consensus 254 ~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444445555555444444443
No 167
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.33 E-value=24 Score=36.46 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 002878 154 DCQKQQMDHLSLKL 167 (872)
Q Consensus 154 ~el~rql~dl~akL 167 (872)
..+.++..++..++
T Consensus 117 ~kle~ErdeL~~kf 130 (201)
T PF13851_consen 117 EKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 168
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.21 E-value=32 Score=37.65 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=28.0
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHH
Q 002878 227 TESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQ-MSRDSFEKKLVTSIREIKNLEGFV 290 (872)
Q Consensus 227 l~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq-~e~d~~~~~l~~le~e~~~l~~~l 290 (872)
+..|.+++..++.+.......++.+.+.+..+|..+..=+ ..+..+..++..+..+.+.|+..|
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333322 112344445555555555555443
No 169
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.07 E-value=30 Score=37.12 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002878 118 SDQLTETLQHLASQVQDAEK 137 (872)
Q Consensus 118 ~~~l~~~l~~l~~~i~~~E~ 137 (872)
++++...|..+...|..++.
T Consensus 75 i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 75 IDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 170
>PLN02939 transferase, transferring glycosyl groups
Probab=90.04 E-value=65 Score=40.94 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002878 389 AGEKISRLESEAEALISKKIETELLVSKLEKEID 422 (872)
Q Consensus 389 le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~ 422 (872)
.++.+..|+.++.-|.+.+.+++..+...+..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (977)
T PLN02939 255 TEERVFKLEKERSLLDASLRELESKFIVAQEDVS 288 (977)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3345555666655555555555555544444433
No 171
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.93 E-value=43 Score=38.75 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 456 FHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKK 535 (872)
Q Consensus 456 lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae~ 535 (872)
++.+++.+..++.....+...|.+.+-++++++-.+....++....+.........+...+.+++.+|.....+..+++.
T Consensus 217 ~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 217 GQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445554555555555555555555555444444433333333333445555555655555555555444443
No 172
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.67 E-value=33 Score=42.91 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002878 159 QMDHLSLKLGSAEEIITKREKELEDLKIE 187 (872)
Q Consensus 159 ql~dl~akLee~e~~l~~~~~eLe~Lk~~ 187 (872)
++.+++.++..++......+..+..++..
T Consensus 238 ~L~~l~~ql~~a~~~~~~a~a~~~~l~~~ 266 (754)
T TIGR01005 238 QLAELNTELSRARANRAAAEGTADSVKKA 266 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 173
>PRK11281 hypothetical protein; Provisional
Probab=89.57 E-value=79 Score=41.19 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=41.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 133 QDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 133 ~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
..+|..+..++..+...+..+...+.++..+..+.+.++..+......+..+...+..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3466666677777777777777777777777777777777777777777776665544
No 174
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=88.90 E-value=14 Score=42.04 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHH
Q 002878 45 KLTAEKLVKEQASVKTDLEMANSKLKKSME----HVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQ 120 (872)
Q Consensus 45 k~~l~~l~~e~e~lq~el~e~~~kiek~~~----~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~ 120 (872)
...+..+..++..++.....+...++.+.. .+..+.+.++.-.-..++|+.++.++.+. -..++..++.++..
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~el---Hq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTEL---HQNEIYNLKQELAS 287 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 333444444444444444444444444444 33444444444444444555555443222 22233333333333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002878 121 LTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQK 157 (872)
Q Consensus 121 l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~ 157 (872)
+-..|+-. ...+.+.+.+.++..++++..++
T Consensus 288 ~EEK~~Yq------s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 288 MEEKMAYQ------SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333332 22334444444444444444444
No 175
>PLN02939 transferase, transferring glycosyl groups
Probab=88.77 E-value=80 Score=40.21 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 002878 63 EMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFF 142 (872)
Q Consensus 63 ~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~l 142 (872)
+.+..=|...+-.|-++.+-+.+.-....++-.+...++.+++-|+.+++.+..... -- ........-+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~ 199 (977)
T PLN02939 131 EDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIK-------LA----AQEKIHVEIL 199 (977)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh-------hh----hhccccchhh
Confidence 344444555555666666655555555566555555666666666665555433221 11 0111223344
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 143 EDKISSSMNAVDCQKQQ----MDHLSLKLGSAEEIITKREKELEDLKIEREER 191 (872)
Q Consensus 143 E~el~e~~~kl~el~rq----l~dl~akLee~e~~l~~~~~eLe~Lk~~lee~ 191 (872)
+.+++.+...+..-..- ...+...+..+......++..+..++..+.+-
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 200 EEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55555555544331111 12355666666677677777777777766553
No 176
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.36 E-value=93 Score=40.47 Aligned_cols=53 Identities=21% Similarity=0.119 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH------HHHhhHHHHHHHHHHHhh
Q 002878 639 EHIGELKCAELQAENELREKTTKLKSEHEVQMKAL------QCQHEDECRKLHEELHLQ 691 (872)
Q Consensus 639 ~~~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~l------q~~~ee~~~~~~~~~~~q 691 (872)
....+.+++=..+-..-++++.++-+.+..||..+ +.|+.+....+++-+..|
T Consensus 372 ~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L~~~ 430 (1109)
T PRK10929 372 PLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNEATHRY 430 (1109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444443344456788888888877777554 344444444444333333
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.36 E-value=68 Score=39.82 Aligned_cols=78 Identities=13% Similarity=0.265 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHH
Q 002878 51 LVKEQASVKTDL-EMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHL 128 (872)
Q Consensus 51 l~~e~e~lq~el-~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l 128 (872)
+-...+.+++++ .....-...++.++.++...++.....+..+..++..+...-..|..++......-..|...++.+
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455443 333333445555555555555555555555555555554444444445444444444444444443
No 178
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=88.33 E-value=37 Score=35.80 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 002878 464 EEEINNLKQEHEKKEMLVDSIEKQFCQL 491 (872)
Q Consensus 464 eeele~lrk~l~~Le~kiesLe~El~~L 491 (872)
...|..++..+..-..+++.++.+|..|
T Consensus 176 nl~F~rlK~ele~tk~Klee~QnelsAw 203 (330)
T KOG2991|consen 176 NLFFLRLKGELEQTKDKLEEAQNELSAW 203 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 3344444444444444444444444443
No 179
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=88.29 E-value=64 Score=39.03 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhh----cHH
Q 002878 624 SIQQEYDKKEMNLKAEHIGELKCAELQA----ENELREKTTKLKSEHEVQMKALQCQHEDECRKLHEELHLQK----SKE 695 (872)
Q Consensus 624 ~~~~~~~~k~~~~~a~~~~el~~~q~~~----~~~~~~~~~~~~~~~e~qik~lq~~~ee~~~~~~~~~~~q~----~~~ 695 (872)
+++.++.+.......++.++|......+ +..+.+.+..-|..+-.++.+|..++..-|. ......... ...
T Consensus 330 ~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~-~~~~~~~~~~~~~~~~ 408 (582)
T PF09731_consen 330 ELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEE-ALDARSEAEDENRRAQ 408 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4444555555555556666665544443 6667788888888888888888888877743 332222222 223
Q ss_pred HHHHHHHHhhHHHhcCC----Ccchhhhhhcccc
Q 002878 696 DRQRALLQLQWKVMGNK----PQEDQEVNSKQAY 725 (872)
Q Consensus 696 e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 725 (872)
.-..++..++-.+.++. .+..+|+..=+.+
T Consensus 409 ~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 409 QLWLAVDALKSALDSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHh
Confidence 34457788888998884 4678888876654
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.94 E-value=22 Score=37.51 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHh
Q 002878 395 RLESEAEALISK 406 (872)
Q Consensus 395 ~Le~e~e~L~~~ 406 (872)
.+..+.+.|...
T Consensus 36 e~~kE~~~L~~E 47 (230)
T PF10146_consen 36 EYRKEMEELLQE 47 (230)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 181
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.91 E-value=64 Score=38.12 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 149 SMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERD 192 (872)
Q Consensus 149 ~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~ 192 (872)
+..++.++..++.++..++..---.+.....++..++..+....
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEG 295 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhc
Confidence 34445555666666666665555556667777777777766553
No 182
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.42 E-value=26 Score=33.09 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=39.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 32 STDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNA 86 (872)
Q Consensus 32 ~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l 86 (872)
++-|.+.+-++.+...+..++.++..++.++..+......+..+|.-+-...+.+
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888888888888888888888777777777777766665555444
No 183
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.25 E-value=79 Score=38.44 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 390 GEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRS 430 (872)
Q Consensus 390 e~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e 430 (872)
...+..+.-.++.|..++.+-...+.++..++..+...+..
T Consensus 102 ke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 102 KEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555555555555555555555555555555544443
No 184
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=87.15 E-value=1.1 Score=49.11 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=15.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhh
Q 002878 34 DSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSS 113 (872)
Q Consensus 34 ~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~ 113 (872)
-+++.|.+..+...+..++..+..++..+-.+.+.+-.+.+.+.-+..-+.....++..+...+.. +...+..
T Consensus 23 ~s~s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~-------lq~Sl~~ 95 (326)
T PF04582_consen 23 ISTSPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTS-------LQSSLSS 95 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 366778888888888888888888887777776666666665555555555444444444444433 4444444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 114 TKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 114 ~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
+...+..+...+......|.++...+..+.-.+..++.-+....-++.++..++..+
T Consensus 96 lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 96 LSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 444444444444444444444444333444444444444444444444444444433
No 185
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.94 E-value=69 Score=37.46 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=39.6
Q ss_pred hHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 97 QKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGS 169 (872)
Q Consensus 97 i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee 169 (872)
...+.+.+..|...+......+.++...+.++.+.+......+..++..++.-..++..++++|-.....+++
T Consensus 340 ~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd 412 (654)
T KOG4809|consen 340 NKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD 412 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3333334444444444444455555666666666666666666666666666666666666665555544433
No 186
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.65 E-value=57 Score=36.18 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 54 EQASVKTDLEMANSKLKKSMEHVRILEEKLQ 84 (872)
Q Consensus 54 e~e~lq~el~e~~~kiek~~~~i~lleeri~ 84 (872)
.++-.+.-+.++.+.|..-...+..+++...
T Consensus 64 ~LElY~~sC~EL~~~I~egr~~~~~~E~et~ 94 (312)
T smart00787 64 LLELYQFSCKELKKYISEGRDLFKEIEEETL 94 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666665555555544
No 187
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.62 E-value=49 Score=35.39 Aligned_cols=77 Identities=27% Similarity=0.346 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHH
Q 002878 49 EKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETL 125 (872)
Q Consensus 49 ~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l 125 (872)
..+...+..++.+.......+......+..|.++...+......|.....++......|.........+-..|...+
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~ 84 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQEL 84 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555566666666666665555555555554444444444443333333333333333
No 188
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.51 E-value=81 Score=38.12 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 002878 240 DLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSI 280 (872)
Q Consensus 240 ~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le 280 (872)
+...+..+++.+.+....+.+.+..|...++++...++.+.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444556666666666666666666665555555555554
No 189
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.51 E-value=82 Score=37.99 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=18.7
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002878 345 DKFFSIASEKDALQLVNQELNSKIIKLQKTQE 376 (872)
Q Consensus 345 ~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~ 376 (872)
..+..+......+..+++.++.++.++.....
T Consensus 175 ~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l 206 (563)
T TIGR00634 175 QQLKDRQQKEQELAQRLDFLQFQLEELEEADL 206 (563)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCc
Confidence 34444545555666666666666666666554
No 190
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.26 E-value=46 Score=34.75 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 002878 563 INDIRRKYEVEK 574 (872)
Q Consensus 563 i~elrr~i~~L~ 574 (872)
+..++.++..+.
T Consensus 167 ~er~e~ki~~~e 178 (221)
T PF04012_consen 167 FERMEEKIEEME 178 (221)
T ss_pred HHHHHHHHHHHH
Confidence 333333443333
No 191
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.00 E-value=48 Score=37.86 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002878 395 RLESEAEALISKKIETELLVSKLEKEIDSLL 425 (872)
Q Consensus 395 ~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~ 425 (872)
.++.+..++......++..+..++..+..+.
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ 395 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTKLKKCQ 395 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 192
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=85.60 E-value=42 Score=33.64 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Q 002878 651 AENELREKTTKLKSEHEVQMKALQCQHEDECRKLHEEL 688 (872)
Q Consensus 651 ~~~~~~~~~~~~~~~~e~qik~lq~~~ee~~~~~~~~~ 688 (872)
+...+.+++..++..+...+.+|...++.....+...+
T Consensus 149 ~~~~i~~~~~~l~~~l~~~~~~l~~~l~~~~~~l~~~~ 186 (202)
T PF01442_consen 149 LEAKISERLEELRESLEEKAEELKETLDQRIEELESSI 186 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544444333
No 193
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.40 E-value=56 Score=34.94 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 48 AEKLVKEQASVKTDLEMANSKLKKSMEHV 76 (872)
Q Consensus 48 l~~l~~e~e~lq~el~e~~~kiek~~~~i 76 (872)
+..+..+....+..+......+..+....
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~ 42 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKL 42 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 194
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.35 E-value=1e+02 Score=37.81 Aligned_cols=30 Identities=7% Similarity=-0.058 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002878 388 LAGEKISRLESEAEALISKKIETELLVSKL 417 (872)
Q Consensus 388 ~le~~i~~Le~e~e~L~~~~e~le~~i~eL 417 (872)
.+..-...|+.++.+.....+.+...-.+|
T Consensus 431 sLqSlN~~Lq~ql~es~k~~e~lq~kneel 460 (861)
T PF15254_consen 431 SLQSLNMSLQNQLQESLKSQELLQSKNEEL 460 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence 334444455555555444444444333333
No 195
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.81 E-value=60 Score=34.74 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 116 TLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 116 ~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
.+...|.+....+...-.++++.+..+...+.--...+.-+..+++.....++.++..++....+|+........
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333333333333334444444444444444555555555666666666666667777777777666555553
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.55 E-value=51 Score=37.65 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=13.4
Q ss_pred hhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHH
Q 002878 96 KQKEDEKLWKGLESKFSSTKTLSDQLTETLQH 127 (872)
Q Consensus 96 ~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~ 127 (872)
....+......++.++..+.+.+++++.++..
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444433
No 197
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.62 E-value=48 Score=35.39 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMANSKLK 70 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~~~kie 70 (872)
++.++..++++|..+...-+..|..+...+.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLq 49 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQ 49 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444444444444444444433333
No 198
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.57 E-value=23 Score=41.96 Aligned_cols=88 Identities=19% Similarity=0.344 Sum_probs=45.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 399 EAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKE 478 (872)
Q Consensus 399 e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le 478 (872)
.+..+....+.++..++.|+..+..+...++.+++++..+...+. .......++..+...+..|++.+.+-.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--------~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR--------DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444333332221 122344566667777777777777777
Q ss_pred HhHHhHHHHHHHHHHH
Q 002878 479 MLVDSIEKQFCQLQNI 494 (872)
Q Consensus 479 ~kiesLe~El~~Lk~~ 494 (872)
..++.|...+..++..
T Consensus 495 ~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 495 KRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766643
No 199
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=83.15 E-value=53 Score=32.86 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=4.0
Q ss_pred HHHHHHHHHHh
Q 002878 667 EVQMKALQCQH 677 (872)
Q Consensus 667 e~qik~lq~~~ 677 (872)
+..+.+|...+
T Consensus 176 ~~~~~~l~~~~ 186 (202)
T PF01442_consen 176 DQRIEELESSI 186 (202)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 200
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.14 E-value=26 Score=32.95 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.4
Q ss_pred HHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002878 338 NQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQES 377 (872)
Q Consensus 338 ~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~ 377 (872)
..+..+..++..+...+..++.++.+...-+.+|...-.+
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD 52 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDED 52 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3455566677777778888888888888888888776544
No 201
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.75 E-value=72 Score=37.90 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=23.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 505 HNDKEKKLEDQITENQAQLTAAESRLSEAKKQY 537 (872)
Q Consensus 505 ~~~~~~~le~~L~elr~q~e~~e~~~~eae~~y 537 (872)
+...+.+|..++.+++-.|..+++...+.+..+
T Consensus 172 LETqKlDLmaevSeLKLkltalEkeq~e~E~K~ 204 (861)
T KOG1899|consen 172 LETQKLDLMAEVSELKLKLTALEKEQNETEKKL 204 (861)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 444566888888888888888877766666643
No 202
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.24 E-value=24 Score=39.15 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=8.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 002878 165 LKLGSAEEIITKREKELEDLK 185 (872)
Q Consensus 165 akLee~e~~l~~~~~eLe~Lk 185 (872)
..++.+...+......|+.|+
T Consensus 113 ~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444433
No 203
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.21 E-value=46 Score=31.48 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002878 355 DALQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 355 ~~L~~el~eL~~ql~~L~~~ 374 (872)
..++.++..++.++..+...
T Consensus 26 r~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 204
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.17 E-value=56 Score=32.47 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q 002878 254 TKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEG 288 (872)
Q Consensus 254 ~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~ 288 (872)
.+..+.++...+..++..++..|+.|+.....+..
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~ 62 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQ 62 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445455555555555554444443
No 205
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=82.00 E-value=1e+02 Score=35.31 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMA 65 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~ 65 (872)
..+.+...+..|..+++.+..++...
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 206
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=81.76 E-value=1e+02 Score=35.09 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002878 179 KELEDLKIEREERDKLYRDE-CCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKEN 257 (872)
Q Consensus 179 ~eLe~Lk~~lee~~k~~~~~-~~~~~~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~ 257 (872)
.+|+.++.+++...+.+..- .|.+ ...++.++. - ...-++...+.+.+.++.+|..+.+.++.+++++..
T Consensus 309 kelE~lR~~L~kAEkele~nS~wsa---P~aLQ~wLq---~---T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrss 379 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEANSSWSA---PLALQKWLQ---L---THEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSS 379 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCC---cHHHHHHHH---H---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 47788888877776664432 2222 222332221 1 123345667888888888888888888877777766
Q ss_pred HHHHHHHH-hhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 258 LEKEKSDL-QMSRDSFEKKLVTSIREIKNLEGFVHVFAA 295 (872)
Q Consensus 258 lEKek~~L-q~e~d~~~~~l~~le~e~~~l~~~l~~~~~ 295 (872)
+=....-. -..+|+....|=.+-..+.++...+.+...
T Consensus 380 v~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~ 418 (575)
T KOG4403|consen 380 VFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLH 418 (575)
T ss_pred hheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443332 233566666666555555555554444333
No 207
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.57 E-value=1.4e+02 Score=37.02 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q 002878 55 QASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESK 110 (872)
Q Consensus 55 ~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k 110 (872)
...++..+..+...++.--..+..+.+++..+.....+|..++.++..+.+.|..+
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555555544444444443
No 208
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=81.22 E-value=43 Score=31.96 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 388 LAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKIS 443 (872)
Q Consensus 388 ~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~ 443 (872)
.+..+|..+...+++..+-...+...+..+...+..+..++......+..|+.++.
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555555555555544445555555555555554444444444444444443
No 209
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.89 E-value=85 Score=33.70 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 002878 463 KEEEINNLKQEHEKKEMLVDSIEKQFCQLQNIL 495 (872)
Q Consensus 463 ~eeele~lrk~l~~Le~kiesLe~El~~Lk~~l 495 (872)
+..++...|..++.++..+..|..++..|....
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555565566666666666655555443
No 210
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.81 E-value=1.1e+02 Score=35.75 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 64 MANSKLKKSMEHVRILEEKLQNAV 87 (872)
Q Consensus 64 e~~~kiek~~~~i~lleeri~~l~ 87 (872)
.+...+......+..+..++..+.
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~ 192 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQ 192 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 211
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.67 E-value=1.7e+02 Score=37.04 Aligned_cols=158 Identities=18% Similarity=0.270 Sum_probs=99.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH-----HHHHHHH
Q 002878 35 SLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEK-----LWKGLES 109 (872)
Q Consensus 35 ~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~-----~~~~Le~ 109 (872)
++....+-.....+..+......+...+......+..+...+..+....+..... .+....+.-+.. .+..-..
T Consensus 170 Aig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer-~~~~~~Ie~l~~k~~~v~y~~~~~ 248 (1072)
T KOG0979|consen 170 AIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER-ERKKSKIELLEKKKKWVEYKKHDR 248 (1072)
T ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchHhhhH
Confidence 3444445555555666666555665555555555555555555555555544322 222222222211 2333445
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002878 110 KFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIERE 189 (872)
Q Consensus 110 k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~le 189 (872)
++...+...+.+...+..+...+...+..+..++.+..+...++......+.+..++.-+.-..+......+..+...++
T Consensus 249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le 328 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLE 328 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778888888888888888888888888888888888888888888887776666666666666666666655
Q ss_pred HHHH
Q 002878 190 ERDK 193 (872)
Q Consensus 190 e~~k 193 (872)
...+
T Consensus 329 ~lk~ 332 (1072)
T KOG0979|consen 329 SLKK 332 (1072)
T ss_pred HHHH
Confidence 5433
No 212
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=80.32 E-value=35 Score=29.73 Aligned_cols=67 Identities=12% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHHHHHHHHHHH
Q 002878 542 ESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERKCDQKLAECKEEAKQ 609 (872)
Q Consensus 542 eeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r~~~~L~~~k~e~e~ 609 (872)
..++.+++....++. ..+..-.++..++..--.|+..++... |+..-..+...|+.++..++++++.
T Consensus 7 d~ir~Ef~~~~~e~~-~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 7 DAIRQEFENLSQEAN-SYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444 444455555555555555555666555 6666666666777777776666644
No 213
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.03 E-value=89 Score=33.40 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 385 ECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKI 442 (872)
Q Consensus 385 e~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l 442 (872)
+...+..+|..+..+++.|......++..+...+.++..+..++...+.....+..-+
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666555666666666666666666666555555444444333
No 214
>PRK10869 recombination and repair protein; Provisional
Probab=80.01 E-value=1.5e+02 Score=35.84 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=18.9
Q ss_pred CCCCCcccccCchHHHHHhhhhcCCCCccccCCcC
Q 002878 753 KDPPFLNEAQTPVSQLLKKVENVNTGSMISIPKHH 787 (872)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (872)
.|+.+.|.+..-|.++|+++-. +.++-++.|+
T Consensus 461 pd~gld~~~~~~v~~~l~~l~~---~~qvi~iTH~ 492 (553)
T PRK10869 461 VDVGISGPTAAVVGKLLRQLGE---STQVMCVTHL 492 (553)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc---CCEEEEEecC
Confidence 3556666666777788887743 4444344443
No 215
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=79.98 E-value=72 Score=35.68 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKK 71 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek 71 (872)
++.|..+..+++++.+-...+...++.++..+.+
T Consensus 259 ~~~l~aileeL~eIk~~q~~Leesye~Lke~~kr 292 (455)
T KOG3850|consen 259 GAALDAILEELREIKETQALLEESYERLKEQIKR 292 (455)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448888888888888888888888877776554
No 216
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.96 E-value=1.3e+02 Score=35.15 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002878 43 NLKLTAEKLVKEQASVKTDL 62 (872)
Q Consensus 43 ~lk~~l~~l~~e~e~lq~el 62 (872)
.+...+..+..+...++.+.
T Consensus 163 aL~ekLk~~~een~~lr~k~ 182 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKA 182 (596)
T ss_pred HHHhhcCChHHHHHHHHHHH
Confidence 33334444444433333333
No 217
>PRK11281 hypothetical protein; Provisional
Probab=79.77 E-value=2.1e+02 Score=37.48 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 389 AGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLL 440 (872)
Q Consensus 389 le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~ 440 (872)
++..+..++.++.+.+..+.+++..+..++..-......+.+....++++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555444444444444444444443
No 218
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=79.38 E-value=1.4e+02 Score=35.46 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002878 353 EKDALQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 353 e~~~L~~el~eL~~ql~~L~~~ 374 (872)
+...+..++..+..+|..+...
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e 303 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAE 303 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 219
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=79.30 E-value=1e+02 Score=33.60 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=17.2
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHH
Q 002878 264 DLQMSRDSFEKKLVTSIREIKNLEG 288 (872)
Q Consensus 264 ~Lq~e~d~~~~~l~~le~e~~~l~~ 288 (872)
++|..+.++..+|+.++.+++.|+.
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK 28 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDK 28 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777777765
No 220
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.16 E-value=43 Score=34.56 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 002878 209 NDAMIKKLEVTVADNRLETESLN--SKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNL 286 (872)
Q Consensus 209 ~~~l~e~~Eee~~e~k~el~~l~--~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l 286 (872)
.+..++.+...+ .++=+..++ ..+.++...+..+.+.++.+++.+..|-++...++.+.....++++.++.++..|
T Consensus 105 ~elvrkEl~nAl--vRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 105 VELVRKELKNAL--VRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 333344442 3444555566666666666666666666666666666666777777766666666
Q ss_pred HHHHHHHHHHH
Q 002878 287 EGFVHVFAAQL 297 (872)
Q Consensus 287 ~~~l~~~~~~l 297 (872)
+..+..+-..+
T Consensus 183 eE~~~~l~~ev 193 (290)
T COG4026 183 EEMLKKLPGEV 193 (290)
T ss_pred HHHHHhchhHH
Confidence 65555444433
No 221
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.77 E-value=89 Score=33.06 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 002878 407 KIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKE 451 (872)
Q Consensus 407 ~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~ 451 (872)
.+..+..|.++..++..|..+.....+++..+...+..|+..+.+
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666666666665555555554433
No 222
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=78.63 E-value=1.2e+02 Score=34.24 Aligned_cols=68 Identities=24% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHhHH------HHHHh----ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 476 KKEMLVDSIEKQFCQLQNILGEK------EQLLL----QHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDLMLES 543 (872)
Q Consensus 476 ~Le~kiesLe~El~~Lk~~lee~------~~~i~----~~~~~~~~le~~L~elr~q~e~~e~~~~eae~~y~~~lee 543 (872)
.|-++++.|+.+-..|+..+++- -..|. +.......+..-|.-++++++.+...+..|++.|+.++..
T Consensus 205 ~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~q 282 (552)
T KOG2129|consen 205 SLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQ 282 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888888761 11222 1111122333444445555555555555555555444433
No 223
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.33 E-value=1.3e+02 Score=34.18 Aligned_cols=86 Identities=20% Similarity=0.370 Sum_probs=41.2
Q ss_pred HHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002878 102 KLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKEL 181 (872)
Q Consensus 102 ~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eL 181 (872)
.-...+.+.+..++.-++.+...+...-..|..-|+ .+-.+++.+-.........++++..++..+...+..+..+|
T Consensus 227 ~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk---~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L 303 (359)
T PF10498_consen 227 QHKKSIESALPETKSQLDKLQQDISKTLEKIESREK---YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTREL 303 (359)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334445555555555555555544444444444333 44444444444444555555555555555555544444444
Q ss_pred HHHHHHHHH
Q 002878 182 EDLKIEREE 190 (872)
Q Consensus 182 e~Lk~~lee 190 (872)
..+..+++.
T Consensus 304 ~~IseeLe~ 312 (359)
T PF10498_consen 304 AEISEELEQ 312 (359)
T ss_pred HHHHHHHHH
Confidence 444444433
No 224
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=78.27 E-value=0.92 Score=21.58 Aligned_cols=6 Identities=50% Similarity=1.315 Sum_probs=4.7
Q ss_pred CCCCCC
Q 002878 867 DPYAFD 872 (872)
Q Consensus 867 ~~~~~~ 872 (872)
-||+|+
T Consensus 2 gpy~fg 7 (8)
T PF08261_consen 2 GPYSFG 7 (8)
T ss_pred Cccccc
Confidence 489986
No 225
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=77.60 E-value=4.4 Score=44.51 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002878 73 MEHVRILEEKLQNAVNEN 90 (872)
Q Consensus 73 ~~~i~lleeri~~l~~~~ 90 (872)
.+.+.-+.+++..++...
T Consensus 27 ~GDLs~I~eRLsaLEssv 44 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSV 44 (326)
T ss_dssp ------------------
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 333334444444333333
No 226
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.11 E-value=81 Score=33.72 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 002878 208 KNDAMIKKLEVTV 220 (872)
Q Consensus 208 e~~~l~e~~Eee~ 220 (872)
.|..+++-+..+.
T Consensus 150 k~r~vlea~~~E~ 162 (251)
T PF11932_consen 150 KFRRVLEAYQIEM 162 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 227
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.78 E-value=39 Score=35.14 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 002878 388 LAGEKISRLESEAEALISKKI 408 (872)
Q Consensus 388 ~le~~i~~Le~e~e~L~~~~e 408 (872)
.+..++..++.++..+...+.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~ 110 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLN 110 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444333
No 228
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.70 E-value=29 Score=35.77 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 002878 427 NLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEK 486 (872)
Q Consensus 427 ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~ 486 (872)
++.+++..++.+...+.+++.+.+. +...+..+..+...+++..+.|+..++.+..
T Consensus 157 eleele~e~ee~~erlk~le~E~s~----LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSR----LEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 3334444444444444444444222 2223333344445555555556555555544
No 229
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.12 E-value=78 Score=34.03 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHhHH
Q 002878 331 LSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEK--ISRLESEAEALISKKI 408 (872)
Q Consensus 331 ~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~--i~~Le~e~e~L~~~~e 408 (872)
..+++++.++.+..+++.. =..+|.+|+.+|...+. ..++++|-.++.+ ++....++..|..-++
T Consensus 68 V~iRHLkakLkes~~~l~d-------RetEI~eLksQL~RMrE------DWIEEECHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLHD-------RETEIDELKSQLARMRE------DWIEEECHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555553333222 23444555555443332 1233455555443 3333444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 409 ETELLVSKLEKEIDSLLENLRSFENKLQDQLL 440 (872)
Q Consensus 409 ~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~ 440 (872)
....-+.+.+.-|.++|.+|.--...++.|..
T Consensus 135 TmrssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 135 TMRSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 55556666677788888887766666555544
No 230
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.76 E-value=1.4e+02 Score=33.24 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002878 246 DEIKLLMITKENLEKEKSDL 265 (872)
Q Consensus 246 e~l~~l~~~~~~lEKek~~L 265 (872)
+....+....-.+-|.-.+|
T Consensus 109 ~d~r~lm~~Qf~lvK~~aRl 128 (312)
T smart00787 109 PDVKLLMDKQFQLVKTFARL 128 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 231
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.23 E-value=1.1e+02 Score=31.90 Aligned_cols=104 Identities=20% Similarity=0.215 Sum_probs=54.7
Q ss_pred HHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002878 337 QNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQ-CLEECRLAGEKISRLESEAEALISKKIETELLVS 415 (872)
Q Consensus 337 k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~q-l~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~ 415 (872)
...+......+.........++.++..+...+..+...-...... -++.-+.+-.++..++.++..+...+..+...+.
T Consensus 36 e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~ 115 (221)
T PF04012_consen 36 EEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVE 115 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555666666777777776666666543333211 1122233334455555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 416 KLEKEIDSLLENLRSFENKLQDQLL 440 (872)
Q Consensus 416 eLe~ei~~l~~ei~e~E~~~e~Le~ 440 (872)
.|...+..+...+.++......+..
T Consensus 116 ~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 116 KLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444443
No 232
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.18 E-value=49 Score=34.35 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002878 355 DALQLVNQELNSKIIKLQ 372 (872)
Q Consensus 355 ~~L~~el~eL~~ql~~L~ 372 (872)
..++.++.+++.++.++.
T Consensus 96 p~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 96 PDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555444
No 233
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=75.16 E-value=1.1e+02 Score=35.56 Aligned_cols=32 Identities=0% Similarity=0.116 Sum_probs=13.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 136 EKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 136 E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
...++-....+..+...+..+...|..+..-+
T Consensus 238 ~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i 269 (424)
T PF03915_consen 238 QRGVRPSPKQLETVAKDISRASKELKKMKEYI 269 (424)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544444443
No 234
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.94 E-value=49 Score=27.75 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGL 107 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~L 107 (872)
-|+.+...+....+-+.-++-++.+++.+-..+..........++.+..+...|+.+....+.++..|
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555554444444433
No 235
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.70 E-value=61 Score=30.90 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=49.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--HH
Q 002878 509 EKKLEDQITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK--AD 586 (872)
Q Consensus 509 ~~~le~~L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~--le 586 (872)
++.|....+.+-.+++.....+..+.+.+...+..+-..++...+-.. ..+.++.+++..+..+..++..+.... |+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~-~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISK-QIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666654443333 555666666666666666665555444 55
Q ss_pred HHHHHH
Q 002878 587 KTIGEM 592 (872)
Q Consensus 587 ~~l~e~ 592 (872)
..|.++
T Consensus 117 ~ki~~i 122 (126)
T PF07889_consen 117 GKIDEI 122 (126)
T ss_pred HHHHHH
Confidence 544444
No 236
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.62 E-value=1.3e+02 Score=32.55 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMA 65 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~ 65 (872)
+..++..+..+....+.++..+..+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554443
No 237
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.54 E-value=68 Score=29.69 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 350 IASEKDALQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 350 l~~e~~~L~~el~eL~~ql~~L~~~ 374 (872)
+......+..++.+...-+++|...
T Consensus 22 l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 22 VATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444555555555444444443
No 238
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=73.83 E-value=89 Score=36.72 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002878 243 SKEDEIKLLMITKENLEKEKSD 264 (872)
Q Consensus 243 ~~~e~l~~l~~~~~~lEKek~~ 264 (872)
.+.+++.+.+.++..|+.++..
T Consensus 306 ~L~qqV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 306 GLAQQVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777
No 239
>PF14992 TMCO5: TMCO5 family
Probab=73.62 E-value=1.4e+02 Score=32.39 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 002878 415 SKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNI 494 (872)
Q Consensus 415 ~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~ 494 (872)
..+...-..+...|.+.+..++.|+.++.....-..+. ++...-....+.++..+...-+.|+..-+.+..-+..+++.
T Consensus 14 Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k 92 (280)
T PF14992_consen 14 QRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRK 92 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhh
Confidence 33444444455555666666666665554332222111 11111112223333333333344444444444444455555
Q ss_pred HhH
Q 002878 495 LGE 497 (872)
Q Consensus 495 lee 497 (872)
+++
T Consensus 93 ~~e 95 (280)
T PF14992_consen 93 QDE 95 (280)
T ss_pred hcc
Confidence 443
No 240
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.19 E-value=65 Score=27.91 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLW 104 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~ 104 (872)
|..+...+....+.+.-++-+|.+++.+-..+...+..+..-...+.....+|..+....+.++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333333334444444444444333333
No 241
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.70 E-value=72 Score=37.97 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002878 41 FANLKLTAEKLVKEQ 55 (872)
Q Consensus 41 l~~lk~~l~~l~~e~ 55 (872)
+..++..+..++..+
T Consensus 354 Y~~yk~kl~~vEr~~ 368 (652)
T COG2433 354 YLAYKPKLEKVERKL 368 (652)
T ss_pred HHHHHHHHHHHHHhc
Confidence 334444444444443
No 242
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=71.62 E-value=1.9e+02 Score=33.08 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Q 002878 29 SRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV--------------------- 87 (872)
Q Consensus 29 ~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~--------------------- 87 (872)
.||++|-|.-+--..|..++.-+..-...+...+..+...+..+.+-...++..+.+-.
T Consensus 106 ~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~ 185 (384)
T PF03148_consen 106 KRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISY 185 (384)
T ss_pred CCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcc
Q ss_pred ----------------------HHHHHHHHhhHhhHHHHHHHHHhHhhhhhh-hHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002878 88 ----------------------NENAKLKVKQKEDEKLWKGLESKFSSTKTL-SDQLTETLQHLASQVQDAEKNKEFFED 144 (872)
Q Consensus 88 ----------------------~~~~~L~~~i~el~~~~~~Le~k~s~~k~~-~~~l~~~l~~l~~~i~~~E~~~~~lE~ 144 (872)
..+.+....+.....-...+..-+..+... ..+....-..+...|.+...-+..|+.
T Consensus 186 ~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ 265 (384)
T PF03148_consen 186 KPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEW 265 (384)
T ss_pred cCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 002878 145 KISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNR 224 (872)
Q Consensus 145 el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k 224 (872)
++.+...++..+.+.+..+..-+.....-++ ....++.....-.+.+.=.|.....+-.++....
T Consensus 266 ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lk---------------vaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~ 330 (384)
T PF03148_consen 266 QLKKTLQEIAEMEKNIEDLEKAIRDKEGPLK---------------VAQTRLENRTQRPNVELCRDPPQYGLIEEVKELR 330 (384)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002878 225 LETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKS 263 (872)
Q Consensus 225 ~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~ 263 (872)
..+..|..++.+.+..+..+......+...+..-...+.
T Consensus 331 ~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~ 369 (384)
T PF03148_consen 331 ESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLF 369 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 243
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=71.55 E-value=2e+02 Score=33.31 Aligned_cols=21 Identities=5% Similarity=-0.065 Sum_probs=9.6
Q ss_pred CCChhhHHHHHHHHHHHHHHH
Q 002878 35 SLTSGSFANLKLTAEKLVKEQ 55 (872)
Q Consensus 35 ~~~~~~l~~lk~~l~~l~~e~ 55 (872)
++++..=+....-.+.+-+.+
T Consensus 137 s~~~~dp~~A~~i~n~~~~~y 157 (444)
T TIGR03017 137 EFSGVDPRFAATVANAFAQAY 157 (444)
T ss_pred EEeCCCHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 244
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=71.21 E-value=1.7e+02 Score=32.31 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=7.0
Q ss_pred hHHhHHHhhhhhHh
Q 002878 314 LNSHYESCFQSVQM 327 (872)
Q Consensus 314 l~~~~~~~~~~~~~ 327 (872)
+.-.|.+.|+.+..
T Consensus 281 ysLdcRrLfDsLre 294 (401)
T PF06785_consen 281 YSLDCRRLFDSLRE 294 (401)
T ss_pred chHHHHHHHhhhcc
Confidence 33355555555543
No 245
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=70.09 E-value=1.4e+02 Score=30.86 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNE 89 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~ 89 (872)
+|++.-++.++.....++..--.+|..+...+....+.+...+..+..+...
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~ 60 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDS 60 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6888999999999988888888888888888888888888888777777643
No 246
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.13 E-value=48 Score=33.13 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=44.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 234 VEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSR--DSFEKKLVTSIREIKNLEGFVHVFAA 295 (872)
Q Consensus 234 l~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~--d~~~~~l~~le~e~~~l~~~l~~~~~ 295 (872)
+..+..++..+.+++..+......+..+...|...+ +++...+..+..++..+...|..+..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555566777777777777777777776554 77888888888888888887777665
No 247
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.91 E-value=74 Score=27.24 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=3.5
Q ss_pred HHHHHHHHhh
Q 002878 88 NENAKLKVKQ 97 (872)
Q Consensus 88 ~~~~~L~~~i 97 (872)
..++-|..++
T Consensus 18 eti~~Lq~e~ 27 (72)
T PF06005_consen 18 ETIALLQMEN 27 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 248
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=68.63 E-value=1.6e+02 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=20.5
Q ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 339 QYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQK 373 (872)
Q Consensus 339 ~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~ 373 (872)
.++.+..+...+...+..|..++..++.+.+.-..
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~ 87 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRV 87 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666677777777777666664433
No 249
>PRK10698 phage shock protein PspA; Provisional
Probab=67.29 E-value=1.7e+02 Score=30.78 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=43.9
Q ss_pred HHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002878 340 YDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQC-LEECRLAGEKISRLESEAEALISKKIETELLVSKLE 418 (872)
Q Consensus 340 ~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql-~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe 418 (872)
+.++...++........++.++..+...+..+...-..+...= ++.-+.+-.+...+...+..|...+......+..|.
T Consensus 40 l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~ 119 (222)
T PRK10698 40 LVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMK 119 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555566666666666666666554432222111 111111111222233333344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002878 419 KEIDSLLENLRSFENKLQDQLL 440 (872)
Q Consensus 419 ~ei~~l~~ei~e~E~~~e~Le~ 440 (872)
..+..|...+.++......|..
T Consensus 120 ~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 120 KEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 250
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=67.09 E-value=1.3e+02 Score=34.42 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=50.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 002878 37 TSGSFANLKLTAEKLVKEQASVKTDLEMANSK-----------LKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWK 105 (872)
Q Consensus 37 ~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~k-----------iek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~ 105 (872)
..+.+..+..++.++......+...+..++.. +..-.-+...+++.++.+. +--..++..++..+.
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~---elHq~Ei~~LKqeLa 286 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT---ELHQNEIYNLKQELA 286 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34455566556665555555555555555543 3333333344444444333 223344455555555
Q ss_pred HHHHhHhhhhhh-hHHHHHHHHHHHHHHHHHH
Q 002878 106 GLESKFSSTKTL-SDQLTETLQHLASQVQDAE 136 (872)
Q Consensus 106 ~Le~k~s~~k~~-~~~l~~~l~~l~~~i~~~E 136 (872)
.++.++.-...+ ..++...|+.++..|..+|
T Consensus 287 ~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 287 SMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555555444333 6677777777776666666
No 251
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=67.08 E-value=3e+02 Score=33.60 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=23.2
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002878 261 EKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLD 301 (872)
Q Consensus 261 ek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eld 301 (872)
.++.|-.+.+.+...|..+..+.+.+..+...+...+..|.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445555566666666666665555555555555544443
No 252
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.02 E-value=1e+02 Score=28.17 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002878 350 IASEKDALQLVNQELNSKIIKLQ 372 (872)
Q Consensus 350 l~~e~~~L~~el~eL~~ql~~L~ 372 (872)
+......+..++.+...-++++.
T Consensus 18 l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 18 YIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 253
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.17 E-value=1.7e+02 Score=31.48 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 141 FFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKL 194 (872)
Q Consensus 141 ~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~ 194 (872)
.|..+|...+..+.+-.+..-+..--|.+++..|+++++-++.++..+.+..+-
T Consensus 93 eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkG 146 (305)
T PF15290_consen 93 ELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKG 146 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Confidence 333344444444444444444445556778888888888888888887776444
No 254
>PF14992 TMCO5: TMCO5 family
Probab=64.66 E-value=2.1e+02 Score=31.03 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=14.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 002878 258 LEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFV 290 (872)
Q Consensus 258 lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l 290 (872)
+++..++|...+.++--.|...+..+..|...+
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Ei 41 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREI 41 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 255
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=64.57 E-value=2.6e+02 Score=31.87 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 002878 389 AGEKISRLESEAEALISKK 407 (872)
Q Consensus 389 le~~i~~Le~e~e~L~~~~ 407 (872)
+=++++.|+.+.+-|+..+
T Consensus 206 LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3355666666666665544
No 256
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.24 E-value=4.1e+02 Score=34.15 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHH
Q 002878 43 NLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRI--LEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQ 120 (872)
Q Consensus 43 ~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~l--leeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~ 120 (872)
..+.-+..+-.+++.++.++.....+..-+..+-.. .+.+.+.....+..+..++..+...+..+...+.....-...
T Consensus 401 ~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~ 480 (1041)
T KOG0243|consen 401 MKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKEL 480 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344556777888888888888887773333222222 222333333333333333333333333344444333333446
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002878 121 LTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDC 155 (872)
Q Consensus 121 l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~e 155 (872)
|......+...+...+.++..++.++.++...+..
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555555554433
No 257
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=64.19 E-value=92 Score=27.03 Aligned_cols=20 Identities=10% Similarity=0.453 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002878 68 KLKKSMEHVRILEEKLQNAV 87 (872)
Q Consensus 68 kiek~~~~i~lleeri~~l~ 87 (872)
+|...-..|.++.-+++.+.
T Consensus 12 KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 258
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.96 E-value=1.7e+02 Score=29.36 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=11.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 163 LSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 163 l~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
....+..++..+.....+...++.....
T Consensus 103 ~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 103 REEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444433
No 259
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=62.62 E-value=4.7e+02 Score=34.29 Aligned_cols=24 Identities=25% Similarity=0.193 Sum_probs=15.8
Q ss_pred CCCCCCcccccccCCCC----CCCCCCC
Q 002878 846 NPHPSNIGDLFSEGSLN----PYADDPY 869 (872)
Q Consensus 846 ~~~~~~~~~~~~~~~~~----~~~~~~~ 869 (872)
.|.|.=...=|.+|++| .|++||.
T Consensus 1025 ~P~P~V~~~~fgdssi~~elr~wv~~~~ 1052 (1109)
T PRK10929 1025 NPAPEVFLVDLQQGIQIFELRIYAAEMG 1052 (1109)
T ss_pred CCCCEEEEEecCCCceEEEEEEEEcChh
Confidence 46665555557778876 7777663
No 260
>PRK10698 phage shock protein PspA; Provisional
Probab=61.98 E-value=2.1e+02 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--h-HHHHHHHH
Q 002878 561 QEINDIRRKYEVEKLEIVNMEKE--K-ADKTIGEM 592 (872)
Q Consensus 561 ~ei~elrr~i~~L~~Ei~~L~~~--~-le~~l~e~ 592 (872)
..+..+..++..++++.+....- . ++.++..+
T Consensus 166 ~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~l 200 (222)
T PRK10698 166 ARFESFERRIDQMEAEAESHGFGKQKSLDQQFAEL 200 (222)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHh
Confidence 34445555666666555443211 1 55555555
No 261
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=60.89 E-value=1.9e+02 Score=29.22 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=38.3
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q 002878 227 TESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQS 304 (872)
Q Consensus 227 l~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~ 304 (872)
...+.+++.-|+..+..++.+-..+-.....++++...-+..+-.-.++++.|+.+|-.|...-.....++..|+.+.
T Consensus 73 CslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL 150 (178)
T PF14073_consen 73 CSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKL 150 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333334444443222222233446667777788777765555666666665333
No 262
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.87 E-value=2.8e+02 Score=31.14 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=10.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 002878 236 EMHIDLQSKEDEIKLLMITKENLE 259 (872)
Q Consensus 236 ~~~~~L~~~~e~l~~l~~~~~~lE 259 (872)
++..+|..+...+.........+.
T Consensus 79 ~a~~~L~~a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 79 EAEEELAEAEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444444444444444444444
No 263
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.81 E-value=3e+02 Score=31.46 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=16.5
Q ss_pred HHHHHhHhhhhhhhHHHHHHHHHHH
Q 002878 105 KGLESKFSSTKTLSDQLTETLQHLA 129 (872)
Q Consensus 105 ~~Le~k~s~~k~~~~~l~~~l~~l~ 129 (872)
..+..++..++.++.+|...+....
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKRK 114 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777776666653
No 264
>PRK04406 hypothetical protein; Provisional
Probab=60.25 E-value=74 Score=27.47 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 127 HLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 127 ~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
.+..+|.++|..+...++-++.++..+....+++..+.+++..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555554444444443
No 265
>PRK09343 prefoldin subunit beta; Provisional
Probab=59.96 E-value=1.6e+02 Score=27.87 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 350 IASEKDALQLVNQELNSKIIKLQK 373 (872)
Q Consensus 350 l~~e~~~L~~el~eL~~ql~~L~~ 373 (872)
+......+..++.+...-+++|..
T Consensus 26 ~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 26 LLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444444444444443
No 266
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.56 E-value=2.3e+02 Score=29.65 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=16.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 345 DKFFSIASEKDALQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 345 ~~~~~l~~e~~~L~~el~eL~~ql~~L~~~ 374 (872)
..++........+..++..+...+..+...
T Consensus 45 ~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 45 TTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666666666655543
No 267
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.49 E-value=1.3e+02 Score=27.01 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=20.4
Q ss_pred HHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002878 340 YDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQE 376 (872)
Q Consensus 340 ~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~ 376 (872)
+..++.++..+......+..++.++..-+.+|...-+
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~ 43 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDD 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444555555555666666666666666555443
No 268
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.22 E-value=92 Score=26.41 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=5.6
Q ss_pred HhhhhhhhHHHHHHH
Q 002878 111 FSSTKTLSDQLTETL 125 (872)
Q Consensus 111 ~s~~k~~~~~l~~~l 125 (872)
+.++...++.++..+
T Consensus 7 ~~~Lr~rLd~~~rk~ 21 (69)
T PF14197_consen 7 IATLRNRLDSLTRKN 21 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 269
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=58.79 E-value=5.4e+02 Score=33.71 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=16.3
Q ss_pred CCCCCcccccCc---hHHHHHhhhhcCCCCccccCCc
Q 002878 753 KDPPFLNEAQTP---VSQLLKKVENVNTGSMISIPKH 786 (872)
Q Consensus 753 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 786 (872)
-|-||.+.-..- |-.+|..+.. .|..|.++.|
T Consensus 981 lDEp~~~lD~~~~~~~~~~l~~l~~--~g~~v~iisH 1015 (1047)
T PRK10246 981 LDEGFGTLDSETLDTALDALDALNA--SGKTIGVISH 1015 (1047)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEec
Confidence 366776664333 3344544432 4666655544
No 270
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.98 E-value=1.1e+02 Score=25.67 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHH
Q 002878 68 KLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETL 125 (872)
Q Consensus 68 kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l 125 (872)
++...-.-|.++.-.++.+......|.....+.......|+..-..++.+-.-++..+
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433333333333333333333334443333333333333333
No 271
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=57.18 E-value=4.6e+02 Score=32.41 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=7.2
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 002878 136 EKNKEFFEDKISSSMNAVDC 155 (872)
Q Consensus 136 E~~~~~lE~el~e~~~kl~e 155 (872)
......+..........+.+
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~ 273 (670)
T KOG0239|consen 254 KAELKELNDQVSLLTREVQE 273 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 272
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=57.09 E-value=2.6e+02 Score=29.57 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 141 FFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKL 194 (872)
Q Consensus 141 ~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~ 194 (872)
.|+..+......+..+...+++....+-............+...+..+.+....
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~ 135 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQ 135 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444333
No 273
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=56.79 E-value=1.2e+02 Score=25.67 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 512 LEDQITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNME 581 (872)
Q Consensus 512 le~~L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~ 581 (872)
|+..+..++..++.+.+...- |+.....|..+.+.....+. .+..++.++...+..|..+++...
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~----~~~~~k~L~~ERd~~~~~l~-~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSV----HEIENKRLRRERDSAERQLG-DAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666654443322 23355566666666555555 555666666666666666655443
No 274
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.15 E-value=34 Score=38.97 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002878 128 LASQVQDAEKNKEFFEDKISSSMNAVDCQK 157 (872)
Q Consensus 128 l~~~i~~~E~~~~~lE~el~e~~~kl~el~ 157 (872)
+...+.+++..+..+++.+.++...+..+.
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~ 171 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELE 171 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 334444444444444444444443333333
No 275
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=55.66 E-value=2.1e+02 Score=27.96 Aligned_cols=57 Identities=7% Similarity=0.149 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 114 TKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 114 ~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
+..++.-+...++..+.++.-+-..|..-+.++.+.-...++.++.-+.|-.+|-++
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eL 138 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMEL 138 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555666666666666666666666656666655433
No 276
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=55.36 E-value=5e+02 Score=32.23 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=63.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-H-hh--cHHHHHHHHHHH-----------------------HHHHHHHHHHH
Q 002878 238 HIDLQSKEDEIKLLMITKENLEKEKSD-L-QM--SRDSFEKKLVTS-----------------------IREIKNLEGFV 290 (872)
Q Consensus 238 ~~~L~~~~e~l~~l~~~~~~lEKek~~-L-q~--e~d~~~~~l~~l-----------------------e~e~~~l~~~l 290 (872)
..=|.++..+++.+.+.+-.++..+.. . .. -..++...|+.+ -.++-.|...+
T Consensus 129 ~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm 208 (683)
T PF08580_consen 129 NDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARM 208 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 334555666667666666666665555 2 22 112344444433 11233333333
Q ss_pred HHHHHHHhHhhHhhHHHHH-HHHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHH
Q 002878 291 HVFAAQLVDLDKQSLTFME-KFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKII 369 (872)
Q Consensus 291 ~~~~~~l~eldkk~~~f~~-k~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~ 369 (872)
.=+.+. ..|++ ++..+...|...|-... +++..++..|...-..|+.+++.|+..+.
T Consensus 209 ~PLraS--------LdfLP~Ri~~F~~ra~~~fp~a~--------------e~L~~r~~~L~~k~~~L~~e~~~LK~ELi 266 (683)
T PF08580_consen 209 QPLRAS--------LDFLPMRIEEFQSRAESIFPSAC--------------EELEDRYERLEKKWKKLEKEAESLKKELI 266 (683)
T ss_pred chHHHH--------HHHHHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333332 34555 45555555655555332 22333333444555566666666666655
Q ss_pred H--HHHhhHHHHHhhHHHHHHHHHHH
Q 002878 370 K--LQKTQESVKAQCLEECRLAGEKI 393 (872)
Q Consensus 370 ~--L~~~~~~l~~ql~ee~~~le~~i 393 (872)
+ |.-+...+..|+...|..++..+
T Consensus 267 edRW~~vFr~l~~q~~~m~esver~~ 292 (683)
T PF08580_consen 267 EDRWNIVFRNLGRQAQKMCESVERSL 292 (683)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33344444444443444333333
No 277
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.78 E-value=5e+02 Score=32.10 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=14.4
Q ss_pred hccccccccccccCc----ccchhhhhhhhh
Q 002878 721 SKQAYSISSSKMRDL----GVGKRSKRAFAR 747 (872)
Q Consensus 721 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 747 (872)
|-..-+|.+|.+++- +..-.....||+
T Consensus 516 SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVD 546 (670)
T KOG0239|consen 516 SSRSHLVFRVRIRGINELTGIRVTGVLNLVD 546 (670)
T ss_pred hhccceEEEEEEeccccCcccccccceeEee
Confidence 445556666666655 333344445665
No 278
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.39 E-value=4.1e+02 Score=31.03 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002878 356 ALQLVNQELNSKIIKLQ 372 (872)
Q Consensus 356 ~L~~el~eL~~ql~~L~ 372 (872)
.+..++..+..++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~ 110 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLK 110 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 279
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=54.37 E-value=1.5e+02 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=14.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 002878 436 QDQLLKISSLEMENKENMEKFHAEMQKKE 464 (872)
Q Consensus 436 e~Le~~l~~Le~~~~~~~~~lq~el~~~e 464 (872)
+.+...+..|+.....++..++.++..+.
T Consensus 42 ~~ir~~v~eLE~~h~kmK~~YEeEI~rLr 70 (79)
T PF08581_consen 42 QQIRQKVYELEQAHRKMKQQYEEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554433
No 280
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=54.06 E-value=1.8e+02 Score=26.81 Aligned_cols=30 Identities=3% Similarity=0.040 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 131 QVQDAEKNKEFFEDKISSSMNAVDCQKQQM 160 (872)
Q Consensus 131 ~i~~~E~~~~~lE~el~e~~~kl~el~rql 160 (872)
.+..++..+..++.....+...+.++...+
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443
No 281
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.96 E-value=5.5e+02 Score=32.31 Aligned_cols=441 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHhhHHHHHHHHHhHhhhhhh
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNEN---AKLKVKQKEDEKLWKGLESKFSSTKTL 117 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~---~~L~~~i~el~~~~~~Le~k~s~~k~~ 117 (872)
++.++..+..+..+.+..+....+....-+++..++..+..-...++... ..........+++.+.+..+.+.+..+
T Consensus 360 ~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~ 439 (980)
T KOG0980|consen 360 IEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQE 439 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002878 118 SDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRD 197 (872)
Q Consensus 118 ~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~ 197 (872)
-.+|.....++..+..-.+..+-..+.+...+...+.++.++...+.++.+.....+..++.++..+-.+++.....
T Consensus 440 h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~--- 516 (980)
T KOG0980|consen 440 HADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT--- 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 002878 198 ECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLV 277 (872)
Q Consensus 198 ~~~~~~~l~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~ 277 (872)
+.++.........++++.....-..+..+..+..+..+...+++..+.++.-........-...-..--...-...
T Consensus 517 ----~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ~~~~~~~~il~~ 592 (980)
T KOG0980|consen 517 ----LSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQLQDDLNDPILDG 592 (980)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHHHHHHhccHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHHHHHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHH
Q 002878 278 TSIREIKNLEGFVHVFAAQLVDLDKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDAL 357 (872)
Q Consensus 278 ~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L 357 (872)
.+......+...++.+..-+.-----.-+|+.....-...+-..|+..+..|-..-.++-..+.- +
T Consensus 593 ~~~~~~q~lq~al~~ld~P~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yla~~~d~s~~i~~--------------v 658 (980)
T KOG0980|consen 593 SLASGIQALQNALYQLDSPLHWRCLTSPDFLLSTAENASVNATQFETSFNNYLADGDDASDLIHC--------------V 658 (980)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhHhhH--------------H
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 002878 358 QLVNQELNSKIIKLQKTQESVK----AQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENL--RSF 431 (872)
Q Consensus 358 ~~el~eL~~ql~~L~~~~~~l~----~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei--~e~ 431 (872)
..-..-+-..+...+....... .++.+.|+.+-.....+-..+.+-......-+..+..-=..+..+..++ .++
T Consensus 659 ~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~~lq~~~~~~eel~~~~~ 738 (980)
T KOG0980|consen 659 TLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQYLQTLNQLGEELLPKEL 738 (980)
T ss_pred HHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHhHHhccccc
Q ss_pred HHHHHH----HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhHHHHHHHHHHHHhHHHHHH
Q 002878 432 ENKLQD----QLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHE-KKEMLVDSIEKQFCQLQNILGEKEQLL 502 (872)
Q Consensus 432 E~~~e~----Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~-~Le~kiesLe~El~~Lk~~lee~~~~i 502 (872)
....+. +..++.+....+.+...+++.-.....+.-...+-++. .+-.-+-+|..-|..|-..-......|
T Consensus 739 di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~~LeVne~iL~~ct~lm~aI~~Lv~as~~lQ~EI 814 (980)
T KOG0980|consen 739 DIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAKARESSSGVRLEVNESILSACTALMEAIMALVKASRELQTEI 814 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 282
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=53.75 E-value=4.1e+02 Score=30.83 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 002878 391 EKISRLESEAEALISKKIETELLVSKLEKEID------------SLLENLRSFENKLQDQLLKISSLEMENKENMEKFHA 458 (872)
Q Consensus 391 ~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~------------~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~ 458 (872)
.-...|..+.+.|...+.+|+..|..|..++. .+..++..+...+..+..-+....- .|+.-|+.
T Consensus 206 ~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp---~WkKiWE~ 282 (424)
T PF03915_consen 206 SGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKP---IWKKIWES 282 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH---HHHHHHHH
Confidence 33445566666666666677777777766633 3444444444444444444433322 25555666
Q ss_pred HHHHHHHHHHHH
Q 002878 459 EMQKKEEEINNL 470 (872)
Q Consensus 459 el~~~eeele~l 470 (872)
+++.+.++=.-+
T Consensus 283 EL~~V~eEQqfL 294 (424)
T PF03915_consen 283 ELQKVCEEQQFL 294 (424)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666654443333
No 283
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=53.59 E-value=1.7e+02 Score=26.38 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=33.6
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHhHHHHHHHH
Q 002878 544 KQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK-----ADKTIGEMERKCDQKLAEC 603 (872)
Q Consensus 544 Lq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~-----le~~l~e~e~r~~~~L~~~ 603 (872)
+.....+...+.. .++..+..+.|..+.+..++..|...+ +...+.+++..+-..|...
T Consensus 29 lE~k~~rl~~Ek~-kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~ 92 (96)
T PF08647_consen 29 LEQKKLRLEAEKA-KADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555 666666677777777777776666555 4445555554444444433
No 284
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=52.77 E-value=1.4e+02 Score=28.89 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 002878 393 ISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKE 451 (872)
Q Consensus 393 i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~ 451 (872)
++||..+-..........+-.-++|+..|..|..+....++-..+|...|.-|+..+.+
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666666666666666666666666666666666555555444
No 285
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=52.70 E-value=94 Score=30.17 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=46.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhh
Q 002878 35 SLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSST 114 (872)
Q Consensus 35 ~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~ 114 (872)
.|----|..+...+....+.+...+..+..+..++..++..-.....++..+......|..++-.+-..+.-+...-..+
T Consensus 26 Pv~i~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l 105 (141)
T PF13874_consen 26 PVPIIGFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYAL 105 (141)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45556689999999999999999999999999999999888888888888888888888888877766666666555555
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 002878 115 KTLSDQLTETLQHLASQV 132 (872)
Q Consensus 115 k~~~~~l~~~l~~l~~~i 132 (872)
..+-..|...+..+...+
T Consensus 106 ~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 106 SPEEEELRKRLEALEAQL 123 (141)
T ss_dssp ------------------
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 555555555555554433
No 286
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.28 E-value=4.3e+02 Score=30.58 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002878 352 SEKDALQLVNQELNSKIIK 370 (872)
Q Consensus 352 ~e~~~L~~el~eL~~ql~~ 370 (872)
.....+..++.+|+.+|..
T Consensus 469 ~~tg~~~revrdlE~qI~~ 487 (521)
T KOG1937|consen 469 RETGALKREVRDLESQIYV 487 (521)
T ss_pred HHcchHHHHHHHHHHHHhH
Confidence 4556677777777777764
No 287
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=52.05 E-value=3.2e+02 Score=29.08 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 002878 257 NLEKEKSDLQMSRDSFEKKLVTSIREIKNLE 287 (872)
Q Consensus 257 ~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~ 287 (872)
+++|....++..-++|...|..+..-...-+
T Consensus 162 Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~ 192 (240)
T cd07672 162 KLAQSKQNAEDADRLYMQNISVLDKIREDWQ 192 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444333333
No 288
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=51.70 E-value=1.8e+02 Score=26.18 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q 002878 55 QASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESK 110 (872)
Q Consensus 55 ~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k 110 (872)
+..+...+......+......+..+++++..+..++++-......+....+.+...
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e 60 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE 60 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444444444444555555555555555555555555555554444444333333
No 289
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.64 E-value=2.3e+02 Score=27.23 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=9.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002878 131 QVQDAEKNKEFFEDKISSSMNAVDCQ 156 (872)
Q Consensus 131 ~i~~~E~~~~~lE~el~e~~~kl~el 156 (872)
.+..++..+..+...+..+...++.+
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 290
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=51.63 E-value=3.6e+02 Score=32.00 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 349 SIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENL 428 (872)
Q Consensus 349 ~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei 428 (872)
..-+++..|-.++..|-+--..|.-++.+++.+.+ .|.-+..-|..+++....++..++..|.+++.++..+..+.
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVD----eL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVD----ELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHH----hhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677777777777777778878877776664 23344556777777777788888888888888887776665
Q ss_pred HHH
Q 002878 429 RSF 431 (872)
Q Consensus 429 ~e~ 431 (872)
.++
T Consensus 374 ~~a 376 (832)
T KOG2077|consen 374 EDA 376 (832)
T ss_pred HHH
Confidence 554
No 291
>PRK02119 hypothetical protein; Provisional
Probab=51.39 E-value=1e+02 Score=26.39 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 128 LASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 128 l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
+..+|.++|..+...++-+++++..+....+++..+.+.+..+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555544444444333
No 292
>PRK09343 prefoldin subunit beta; Provisional
Probab=51.14 E-value=2.2e+02 Score=26.89 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=13.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 133 QDAEKNKEFFEDKISSSMNAVDCQKQQMDHL 163 (872)
Q Consensus 133 ~~~E~~~~~lE~el~e~~~kl~el~rql~dl 163 (872)
..++.++..++.....++..+.++..++..+
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 293
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=50.85 E-value=3.8e+02 Score=29.58 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhh
Q 002878 39 GSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLS 118 (872)
Q Consensus 39 ~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~ 118 (872)
|.+-.+....+...+.--..-..|.++..++..... ..+...+.++...+.+....+..++.++.+++..+
T Consensus 34 gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~---------~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 34 GAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSS---------TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444444444444444444444444332221 12224444555555555555555555555444444
Q ss_pred HHHHHH
Q 002878 119 DQLTET 124 (872)
Q Consensus 119 ~~l~~~ 124 (872)
......
T Consensus 105 ~~y~~~ 110 (301)
T PF06120_consen 105 KNYQQQ 110 (301)
T ss_pred HHHHHH
Confidence 444333
No 294
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=49.42 E-value=3.2e+02 Score=28.29 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 002878 459 EMQKKEEEINNLKQEHEKKEMLVDSIEKQFC 489 (872)
Q Consensus 459 el~~~eeele~lrk~l~~Le~kiesLe~El~ 489 (872)
+++....+...++..+..++..+..|...+.
T Consensus 74 ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 74 ELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 295
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=49.40 E-value=4.8e+02 Score=30.41 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 002878 246 DEIKLLMITKENLEKEKSDLQMSRDSFEKKLVT 278 (872)
Q Consensus 246 e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~ 278 (872)
.-|+++.+....+--++.+|+.+++++....+.
T Consensus 691 aLidqi~kaaIdltvEkprlqAeLdd~ea~ck~ 723 (790)
T PF07794_consen 691 ALIDQITKAAIDLTVEKPRLQAELDDLEARCKS 723 (790)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhchHHHhhhhh
Confidence 445555555556666777777766666655443
No 296
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.84 E-value=4.7e+02 Score=30.05 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 002878 514 DQITENQAQLTAA 526 (872)
Q Consensus 514 ~~L~elr~q~e~~ 526 (872)
.-+.+++.+++++
T Consensus 374 ELieelrkelehl 386 (502)
T KOG0982|consen 374 ELIEELRKELEHL 386 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 297
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.66 E-value=2.9e+02 Score=27.52 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=34.0
Q ss_pred ccccCccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 19 SRSAKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHV 76 (872)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i 76 (872)
+|.++-|..+.-++ +..|...+..+..++..+..++..++.++-.+..++..+....
T Consensus 53 ~GKqkiY~~~Q~~~-~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 53 YGKQKIYFANQDEL-EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred ecceEEEeeCcccc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55555555544433 3455566677777677666666666666666666655555544
No 298
>PRK04325 hypothetical protein; Provisional
Probab=48.29 E-value=1.2e+02 Score=26.12 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 130 SQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 130 ~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
.+|.++|..+...++-++.++..+....+++..+.+++..+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544444444333
No 299
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=48.27 E-value=2.9e+02 Score=27.50 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 56 ASVKTDLEMANSKLKKSMEHVRILEEKLQ 84 (872)
Q Consensus 56 e~lq~el~e~~~kiek~~~~i~lleeri~ 84 (872)
+.++.++..+...+..+...+...-...+
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD 51 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVD 51 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444433333333333333
No 300
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=48.19 E-value=67 Score=34.70 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=37.3
Q ss_pred hhhccccCc-cccCCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 16 KSLSRSAKS-FSFSSRPSTD---SLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENA 91 (872)
Q Consensus 16 ~~~~~~~~~-~~~~~~~~~~---~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~ 91 (872)
--|.|.+.+ ..+.|=|.+| |.+...+..+...+......+-.++..|..+..++.++.|++..+.-+++.+..+..
T Consensus 13 ~~l~~~~~~~~~~a~a~v~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 13 SLLVGVAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHhhhHHHhcCCcHHHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 446664333 3334446666 122222233333333333334455555666666666666666555555555554433
Q ss_pred HHHH
Q 002878 92 KLKV 95 (872)
Q Consensus 92 ~L~~ 95 (872)
.+..
T Consensus 93 ~~y~ 96 (263)
T PRK10803 93 QIYL 96 (263)
T ss_pred HHHH
Confidence 3333
No 301
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.73 E-value=1.7e+02 Score=34.11 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=34.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 553 KEISQRNDQEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEE 617 (872)
Q Consensus 553 eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE 617 (872)
+.++ .+-.++.+++.++..|..+...|..+| |.+.-..+..+.+..+...+.++..+..++..+
T Consensus 59 DTlr-Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 59 DTLR-TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344 444566666666666666666666555 555545555555555655554444444444333
No 302
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=47.46 E-value=2.7e+02 Score=26.92 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 002878 641 IGELKCAELQAENELREKTTKLKSEHEVQMKALQCQH 677 (872)
Q Consensus 641 ~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~lq~~~ 677 (872)
..++.+...++..++......+...+..||-+|-.++
T Consensus 98 ~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 98 KAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEAL 134 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444444444444444444555554444443
No 303
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=47.29 E-value=5.2e+02 Score=30.16 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002878 224 RLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSD-LQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDL 300 (872)
Q Consensus 224 k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~-Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~el 300 (872)
+.....+...+.++..++.....++..+...+..+.+.... +..-...+...+..++.....+...+..+..++..+
T Consensus 291 r~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~ 368 (458)
T COG3206 291 RQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL 368 (458)
T ss_pred HHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333444444444445555555556666666666655555 444444444445555555555555555555444443
No 304
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.03 E-value=1e+02 Score=26.02 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=9.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 134 DAEKNKEFFEDKISSSMNAVDCQKQQ 159 (872)
Q Consensus 134 ~~E~~~~~lE~el~e~~~kl~el~rq 159 (872)
++|..+...++-++.++..+....++
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~ 33 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQ 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 305
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.39 E-value=74 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=8.1
Q ss_pred HHHhHhhhhhhhHHHHHHHHHH
Q 002878 107 LESKFSSTKTLSDQLTETLQHL 128 (872)
Q Consensus 107 Le~k~s~~k~~~~~l~~~l~~l 128 (872)
|+.+++-...-+++|+..+..-
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Q 30 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQ 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 306
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=46.28 E-value=4.3e+02 Score=30.88 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Q 002878 591 EMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQA 651 (872)
Q Consensus 591 e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~~a~~~~el~~~q~~~ 651 (872)
++...|...|.+.+.+....+...+.+-+.+..++-.+-...+....+....++.+++.++
T Consensus 53 ~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a 113 (445)
T PRK13428 53 EADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQL 113 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445554444444444444444444443333333333333333333333333333
No 307
>PRK00295 hypothetical protein; Provisional
Probab=45.90 E-value=1.3e+02 Score=25.31 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 131 QVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 131 ~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
+|.++|..+...++-++.++..+....+++..+..++..+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444455444444444444444444444444333
No 308
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=45.70 E-value=4.6e+02 Score=29.09 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 352 SEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSF 431 (872)
Q Consensus 352 ~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~ 431 (872)
.+-..|+..++.|..++-....+..... .....++.-+..++.+...+.-.++++.....+.+.+-..|..++.+.
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k----~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTK----GDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3445677777777777776666543332 122233333444444444444444444444444444444444444433
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 002878 432 ENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQ 492 (872)
Q Consensus 432 E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk 492 (872)
-.-.+.|.+ + ++.-+..--+-+..-+.-+..|+.+++.|.-|+..+-
T Consensus 175 layqq~L~~-------e-------yQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 175 LAYQQELND-------E-------YQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHH-------H-------hhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222 2 2211111122233344455567777777777766543
No 309
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.65 E-value=2.4e+02 Score=25.84 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002878 355 DALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEID 422 (872)
Q Consensus 355 ~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~ 422 (872)
..|...+..|+.-+-+-+.....+. +.+..-+..++.++.+.+.|.=.-..|.+.+..|+.++.
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~----e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELK----EQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333 444555566777777777776666666666655555554
No 310
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.47 E-value=2.6e+02 Score=29.28 Aligned_cols=65 Identities=28% Similarity=0.398 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002878 354 KDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLL 425 (872)
Q Consensus 354 ~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~ 425 (872)
...++.++..++..++.+........ ..+...+..|+..-.++....-+++..+..|+.+|..+.
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q-------~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQ-------EEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544332111 123344555555555555555555555555554444444
No 311
>PF14282 FlxA: FlxA-like protein
Probab=45.46 E-value=2e+02 Score=26.55 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQK 98 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~ 98 (872)
...+..|+.++..|..++..+...-. -..+.....+..+...|..+...++.+.....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~---~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSD---LDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555200 01333444455555555555555544444443
No 312
>PF15294 Leu_zip: Leucine zipper
Probab=45.34 E-value=4.4e+02 Score=28.71 Aligned_cols=7 Identities=43% Similarity=0.534 Sum_probs=2.7
Q ss_pred CCCChhh
Q 002878 34 DSLTSGS 40 (872)
Q Consensus 34 ~~~~~~~ 40 (872)
|..|+-+
T Consensus 28 ~t~T~~E 34 (278)
T PF15294_consen 28 DTYTSDE 34 (278)
T ss_pred HhhhHHH
Confidence 3334433
No 313
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.28 E-value=1.3e+02 Score=25.70 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 130 SQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGS 169 (872)
Q Consensus 130 ~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee 169 (872)
.+|.++|..+...++-+++++..+....+++..+.+++..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~ 47 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRL 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544455544444444444444444444444333
No 314
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.16 E-value=2.4e+02 Score=25.75 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002878 117 LSDQLTETLQHLASQVQDAEKNKEFFED 144 (872)
Q Consensus 117 ~~~~l~~~l~~l~~~i~~~E~~~~~lE~ 144 (872)
.+..+...+..+..++..++.....++.
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444444443
No 315
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=44.61 E-value=5e+02 Score=29.13 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=35.6
Q ss_pred hhhhhhccccCccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 13 DQFKSLSRSAKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRIL 79 (872)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~ll 79 (872)
++||+-+|+. -.|||++.++ ..+...+.++..-++....-=..+..++......+.++
T Consensus 110 ~~~R~kyg~r-----Wtr~pS~~~~----~~l~~~i~~~r~~L~~A~~sD~~v~~k~~~~~~~l~~L 167 (339)
T cd09238 110 SAARTQYGTA-----WTRPPSATLT----KNLWERLNRFRVNLEQAGDSDESLRRRIEDAMDGMLIL 167 (339)
T ss_pred HHHHHHhCCC-----CCCCccHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4578878872 3477777665 35666666666666555555555556666666666555
No 316
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=44.51 E-value=5.1e+02 Score=29.26 Aligned_cols=28 Identities=7% Similarity=-0.230 Sum_probs=15.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 36 LTSGSFANLKLTAEKLVKEQASVKTDLE 63 (872)
Q Consensus 36 ~~~~~l~~lk~~l~~l~~e~e~lq~el~ 63 (872)
.|.|.+.-.+..+...+..+..+...+-
T Consensus 28 ~t~~t~~~~k~~~~~~~~~~~~~~d~~A 55 (593)
T KOG4807|consen 28 TTTSTSQWKKHWFVLTDSSLKYYRDSTA 55 (593)
T ss_pred cCcchHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4456666666666655555555544443
No 317
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=44.33 E-value=6.3e+02 Score=30.24 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=3.0
Q ss_pred CCChhhH
Q 002878 35 SLTSGSF 41 (872)
Q Consensus 35 ~~~~~~l 41 (872)
.+-.|..
T Consensus 321 Tl~fg~r 327 (607)
T KOG0240|consen 321 TLRFGNR 327 (607)
T ss_pred chhhccc
Confidence 3344544
No 318
>PRK00846 hypothetical protein; Provisional
Probab=44.18 E-value=2.2e+02 Score=24.81 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 128 LASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 128 l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
+..+|.++|..+...++-++.++..+....+++..+..++
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433333333
No 319
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.16 E-value=2.6e+02 Score=33.34 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 56 ASVKTDLEMANSKLKKSMEHVRILEEKLQNAV 87 (872)
Q Consensus 56 e~lq~el~e~~~kiek~~~~i~lleeri~~l~ 87 (872)
..++.+|..+..++..+.+.+..++.++..+.
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443
No 320
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.96 E-value=6.1e+02 Score=29.93 Aligned_cols=55 Identities=7% Similarity=0.167 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 140 EFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKL 194 (872)
Q Consensus 140 ~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~ 194 (872)
..+..++......+..+..++..+.++++..+.........|...+..+...++.
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 63 ELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555444444444555555555554443
No 321
>PRK00736 hypothetical protein; Provisional
Probab=43.89 E-value=1.3e+02 Score=25.30 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=18.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 131 QVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 131 ~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
+|.++|..+...++-+++++..+....+++..+..++..+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444555444444444444444444444444333
No 322
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.55 E-value=3e+02 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=14.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 131 QVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSL 165 (872)
Q Consensus 131 ~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~a 165 (872)
.+..+++.+..++..+..+...+..+..++..+..
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333333
No 323
>PRK00846 hypothetical protein; Provisional
Probab=43.53 E-value=1.6e+02 Score=25.64 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=10.5
Q ss_pred HHHHHHHhHhhhhhhhHHHHHHHHHH
Q 002878 103 LWKGLESKFSSTKTLSDQLTETLQHL 128 (872)
Q Consensus 103 ~~~~Le~k~s~~k~~~~~l~~~l~~l 128 (872)
++..|+.+++-...-++.|+..+...
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~q 39 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADA 39 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433344444444333
No 324
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=43.42 E-value=1.3e+02 Score=26.32 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=28.1
Q ss_pred CCCCCCCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 28 SSRPSTDSLTSG--SFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNA 86 (872)
Q Consensus 28 ~~~~~~~~~~~~--~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l 86 (872)
+.|+++|.-..| ..+.+..++..++..+..+-..+...+..-+++.++-..|..-|.++
T Consensus 3 p~~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 3 PRRNSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred CCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777743333 33444444444444444444444444444444444444444444444
No 325
>PRK02119 hypothetical protein; Provisional
Probab=42.42 E-value=1.3e+02 Score=25.78 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=9.6
Q ss_pred HHHhHhhhhhhhHHHHHHHHHHHHHH
Q 002878 107 LESKFSSTKTLSDQLTETLQHLASQV 132 (872)
Q Consensus 107 Le~k~s~~k~~~~~l~~~l~~l~~~i 132 (872)
|+.+++-...-+++|+..+..-+..|
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~i 39 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVI 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 326
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=42.29 E-value=5.4e+02 Score=28.91 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHHHHHH
Q 002878 116 TLSDQLTETLQHLASQV 132 (872)
Q Consensus 116 ~~~~~l~~~l~~l~~~i 132 (872)
..+..+..++..+..+|
T Consensus 242 P~v~~l~~~i~~l~~~i 258 (362)
T TIGR01010 242 PQVPSLQARIKSLRKQI 258 (362)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 33333444444443333
No 327
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.26 E-value=3e+02 Score=26.07 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=19.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002878 345 DKFFSIASEKDALQLVNQELNSKIIKLQKTQ 375 (872)
Q Consensus 345 ~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~ 375 (872)
+.|.++......+..++...+.++..|....
T Consensus 23 N~Fsrl~~R~~~lk~dik~~k~~~enledA~ 53 (131)
T KOG1760|consen 23 NEFSRLNSRKDDLKADIKEAKTEIENLEDAS 53 (131)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566667777777777777666554
No 328
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=41.69 E-value=3e+02 Score=25.72 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q 002878 304 SLTFMEKFY 312 (872)
Q Consensus 304 ~~~f~~k~~ 312 (872)
|..|+.++.
T Consensus 110 Y~~fL~~v~ 118 (126)
T PF13863_consen 110 YEEFLEKVV 118 (126)
T ss_pred HHHHHHHhc
Confidence 444444443
No 329
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.62 E-value=2.3e+02 Score=33.07 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002878 62 LEMANSKLKKSMEHVRIL 79 (872)
Q Consensus 62 l~e~~~kiek~~~~i~ll 79 (872)
+..+...+.....++..+
T Consensus 61 lrTlva~~k~~r~~~~~l 78 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKL 78 (472)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 330
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=41.33 E-value=1.8e+02 Score=26.65 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=7.4
Q ss_pred CCChhhHHHHH
Q 002878 35 SLTSGSFANLK 45 (872)
Q Consensus 35 ~~~~~~l~~lk 45 (872)
-||.-+|.+++
T Consensus 22 YVT~kef~efK 32 (102)
T PF01519_consen 22 YVTHKEFDEFK 32 (102)
T ss_dssp B-BHHHHHHH-
T ss_pred hhhHHHHHHHh
Confidence 78888888666
No 331
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=41.22 E-value=1.7e+02 Score=23.78 Aligned_cols=42 Identities=7% Similarity=0.089 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 252 MITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFA 294 (872)
Q Consensus 252 ~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~ 294 (872)
.+...+++.....++.++.++.+.|+.++..++++.. |+...
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~V 47 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLLS-LYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3344444444445555555555555555555555555 44443
No 332
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.96 E-value=4.1e+02 Score=27.08 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 161 DHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 161 ~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
+-++.+++.+......+..++..+...+.-
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555444444
No 333
>PRK00295 hypothetical protein; Provisional
Probab=40.64 E-value=1.5e+02 Score=24.96 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=12.0
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002878 106 GLESKFSSTKTLSDQLTETLQHLASQVQDAE 136 (872)
Q Consensus 106 ~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E 136 (872)
.|+.+++-...-+++|+..+..-+..|..+.
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~ 39 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQRVIERLQ 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444433333333333
No 334
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.28 E-value=1.4e+02 Score=25.46 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=11.5
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 002878 106 GLESKFSSTKTLSDQLTETLQHLASQVQDA 135 (872)
Q Consensus 106 ~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~ 135 (872)
.|+.+++-...-+++|+..+..-+..|..+
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L 41 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTVTAHEMEMAKL 41 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444443333333333
No 335
>PHA03011 hypothetical protein; Provisional
Probab=40.07 E-value=2.5e+02 Score=25.46 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=46.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002878 36 LTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQK 98 (872)
Q Consensus 36 ~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~ 98 (872)
..-|....+...++++-.++..+..++..+...+....--+....+.+.++.+++.+|+..+.
T Consensus 54 fk~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 54 FKEGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 345777777888888888888888877777777777777777777777777777777666554
No 336
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.86 E-value=1.1e+03 Score=31.84 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=6.8
Q ss_pred CCccccchhhhhhhccc
Q 002878 5 GFPSVKSLDQFKSLSRS 21 (872)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (872)
||.+. ++|..|.-.
T Consensus 175 G~~~~---~ry~~l~~~ 188 (1353)
T TIGR02680 175 GFLGE---ERYAALLDL 188 (1353)
T ss_pred CCCCh---HHHHHHHHH
Confidence 66544 444444443
No 337
>PRK04325 hypothetical protein; Provisional
Probab=39.71 E-value=2e+02 Score=24.72 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002878 388 LAGEKISRLESEAEALISKKIETELLVSKLEKEIDSL 424 (872)
Q Consensus 388 ~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l 424 (872)
.|+.++.+.+.-++.|...+......|..|...+..+
T Consensus 13 ~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 13 ELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443333
No 338
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=39.26 E-value=9.7e+02 Score=30.98 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002878 57 SVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAE 136 (872)
Q Consensus 57 ~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E 136 (872)
.....|.++..+++.+..++..+.+...+.......|..+...++..+..-...+.+++.++.++..+|..-..-|...+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~ 524 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQE 524 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555666666666666666666666666666666666555544455555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 137 KNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 137 ~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
.--..+.+....++..++.....++.+..+++..
T Consensus 525 ~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~ 558 (1041)
T KOG0243|consen 525 KSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK 558 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5455566666677777777777777777777544
No 339
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.20 E-value=7.3e+02 Score=29.51 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 47 TAEKLVKEQASVKTDLEMANSKLK 70 (872)
Q Consensus 47 ~l~~l~~e~e~lq~el~e~~~kie 70 (872)
.+-.+..+.-.++.+...+...++
T Consensus 121 ~i~dlQ~q~k~lqrE~~nlkvele 144 (654)
T KOG4809|consen 121 LLADLQRQAKLLQREEHNLKVELE 144 (654)
T ss_pred hhhhhHHHHHHHHHHhhhhhHHHH
Confidence 333444444444444444444443
No 340
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=39.01 E-value=3.9e+02 Score=26.24 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002878 206 MDKNDAMIKKLEVTVADNRLETESLNSKV 234 (872)
Q Consensus 206 ~~e~~~l~e~~Eee~~e~k~el~~l~~el 234 (872)
+.+++..++.+...+++..+.+..++..+
T Consensus 89 e~~~~eAie~l~k~~~~l~~~~~~l~~~l 117 (145)
T COG1730 89 EKSADEAIEFLKKRIEELEKAIEKLQQAL 117 (145)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333
No 341
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.33 E-value=2.4e+02 Score=27.87 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHHHH
Q 002878 246 DEIKLLMITKENLEKEKSDLQM---SRDSFEKKLVTSIREIKNLEG 288 (872)
Q Consensus 246 e~l~~l~~~~~~lEKek~~Lq~---e~d~~~~~l~~le~e~~~l~~ 288 (872)
++++.+...+....+.+..|+. .++++...|..++..+.....
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~ 72 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKE 72 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433 446666666666666664443
No 342
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.87 E-value=1.4e+02 Score=23.03 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002878 385 ECRLAGEKISRLESEAEALISK 406 (872)
Q Consensus 385 e~~~le~~i~~Le~e~e~L~~~ 406 (872)
+|..+...+..|..+.+.|...
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E 27 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKE 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443333
No 343
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=37.85 E-value=2.6e+02 Score=23.86 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002878 209 NDAMIKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMS 268 (872)
Q Consensus 209 ~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e 268 (872)
+..++..++.+....-.+...+++.+...+.+|..+==+.++..+.++++-|++......
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~ 65 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREA 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Confidence 455677777787777777788888888888888777778888888888888887776553
No 344
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=37.76 E-value=1.9e+02 Score=27.14 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=16.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 131 QVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSL 165 (872)
Q Consensus 131 ~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~a 165 (872)
.+.-++.++..+...+..+...+..+..++..+..
T Consensus 87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 87 AIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 345
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.73 E-value=2.2e+02 Score=23.14 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQN 85 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~ 85 (872)
+..|-..+..|...++.+..++..+...+....++..-..+|+++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444444443333333333333333
No 346
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=37.72 E-value=2.6e+02 Score=28.97 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhhhhccc-cCccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 002878 14 QFKSLSRS-AKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV----- 87 (872)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~----- 87 (872)
+|..+..+ -..++..++.-.|-.-|..++.++..+..++..+..++..+..++................+..+-
T Consensus 6 ~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 6 KLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q ss_pred ------HHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHH
Q 002878 88 ------NENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQH 127 (872)
Q Consensus 88 ------~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~ 127 (872)
.....|-..-..+..........+.+....++.+...+..
T Consensus 86 Ws~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~ 131 (207)
T PF05546_consen 86 WSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMR 131 (207)
T ss_pred CChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 347
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=37.69 E-value=5.3e+02 Score=27.42 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002878 177 REKELEDLKIEREER 191 (872)
Q Consensus 177 ~~~eLe~Lk~~lee~ 191 (872)
+..+|..+...++.+
T Consensus 126 l~~~l~~l~~~~~~E 140 (247)
T PF06705_consen 126 LVRELNELQEAFENE 140 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 348
>PRK15396 murein lipoprotein; Provisional
Probab=37.54 E-value=2.2e+02 Score=24.77 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 39 GSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV 87 (872)
Q Consensus 39 ~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~ 87 (872)
++...+..+...+..+++.+..++..+...+....++-.-..+|++|..
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777788878888887777777777777777777777776654
No 349
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=37.42 E-value=9.4e+02 Score=30.27 Aligned_cols=47 Identities=23% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 145 KISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREER 191 (872)
Q Consensus 145 el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~ 191 (872)
.+.++......+...+.++..+|+..+.....++-++.-+..+++-.
T Consensus 121 ~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir 167 (769)
T PF05911_consen 121 LIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIR 167 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555444444433
No 350
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=37.30 E-value=5.2e+02 Score=27.28 Aligned_cols=48 Identities=6% Similarity=0.206 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002878 142 FEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIERE 189 (872)
Q Consensus 142 lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~le 189 (872)
....+..+...+...+..+..+....+.+...+......+..+...+.
T Consensus 90 ~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 90 EQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444444444444444444444444444444444433
No 351
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.29 E-value=97 Score=25.06 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=10.0
Q ss_pred HHHHHHHhHhhhhhhhHHHHHHHHHH
Q 002878 103 LWKGLESKFSSTKTLSDQLTETLQHL 128 (872)
Q Consensus 103 ~~~~Le~k~s~~k~~~~~l~~~l~~l 128 (872)
++..+++.+..++.++.++...++.+
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 352
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=37.22 E-value=2.1e+02 Score=33.83 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=16.7
Q ss_pred cchhhhhhccccccccccccCc-----ccchhhhhhh
Q 002878 714 QEDQEVNSKQAYSISSSKMRDL-----GVGKRSKRAF 745 (872)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 745 (872)
+-|++.-|--.|-=|.+-.|-- |.||+-+.+|
T Consensus 606 pfdp~LPsEAkF~gs~tGFRPIg~g~gGsGkEF~~aL 642 (907)
T KOG2264|consen 606 PFDPELPSEAKFFGSKTGFRPIGPGAGGSGKEFSKAL 642 (907)
T ss_pred CCCccCcchhhhhccCcCcccCCCCCCCchHHHHHHh
Confidence 5566666665555555544422 3345555554
No 353
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=37.16 E-value=1.1e+02 Score=30.46 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=22.9
Q ss_pred cCCCC-CCC--CCChhhHHHHHHHHHHHHHHHHH
Q 002878 27 FSSRP-STD--SLTSGSFANLKLTAEKLVKEQAS 57 (872)
Q Consensus 27 ~~~~~-~~~--~~~~~~l~~lk~~l~~l~~e~e~ 57 (872)
.++|| |+. -+|..-+..|+.+++.|...+..
T Consensus 19 ~~~r~~~~~~~~lT~~G~~~L~~El~~L~~~i~~ 52 (160)
T PRK06342 19 LPDRPISPHPNLVTEAGLKALEDQLAQARAAYEA 52 (160)
T ss_pred CCCCCCCCCCceECHHHHHHHHHHHHHHHHHHHH
Confidence 35788 555 48888899999999998754433
No 354
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.97 E-value=4.8e+02 Score=26.76 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 116 TLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREER 191 (872)
Q Consensus 116 ~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~ 191 (872)
....++......+...+...+.....++..+.++..++.++.++..-+....+.....+..++.....+...+...
T Consensus 103 ~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 103 DDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555666777777777777777777766666667777777776666666666665553
No 355
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.89 E-value=5.2e+02 Score=27.10 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002878 360 VNQELNSKII 369 (872)
Q Consensus 360 el~eL~~ql~ 369 (872)
++..++....
T Consensus 135 ~~~~lk~~~~ 144 (216)
T KOG1962|consen 135 ENEALKKQLE 144 (216)
T ss_pred HHHHHHHhhh
Confidence 3333333333
No 356
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=36.57 E-value=3.4e+02 Score=24.92 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWK 105 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~ 105 (872)
++..++++...+...+-.-+.....+...+......+.-+++.++.+.=+..+|..++..++..+.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666555566665555555544
No 357
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.49 E-value=34 Score=37.67 Aligned_cols=86 Identities=28% Similarity=0.403 Sum_probs=50.6
Q ss_pred hcCCCCccccCCcCcccccccccccCCCCccccccccccccccccCCCCccc--------ccCCCC-CCccccccccC--
Q 002878 774 NVNTGSMISIPKHHKKVTHHEYEVETSNGRTITKRRKTKSTVMFEDPGKRKK--------MNTTQA-KTPRSVAKGAT-- 842 (872)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~-- 842 (872)
+..||+.+--|+..++-|..-----|+-||.||- |-+|+.+-. ..||.+ .|.|++.-.-+
T Consensus 77 ~aRPGtS~k~p~t~~~g~sq~~rp~t~aGrpv~g---------~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~ 147 (478)
T KOG1129|consen 77 AARPGTSIKTPFTPRPGTSQRARPATSAGRPVAG---------SSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRA 147 (478)
T ss_pred CCCCCCcccCCCCCCCCCchhhcchhhcCCCCcc---------ccCccccCCCCccHHhhccCccccccccccccccchh
Confidence 3457888888888888888777788889997764 334444211 123322 22222211100
Q ss_pred ---CCCCCCCCCcccccccCCCCC--CCCCC
Q 002878 843 ---GGANPHPSNIGDLFSEGSLNP--YADDP 868 (872)
Q Consensus 843 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~ 868 (872)
|....-..|-|.++.-.-||| ||.+|
T Consensus 148 ~RlgtaSmaa~~dG~f~nlsRLN~tkYa~~p 178 (478)
T KOG1129|consen 148 SRLGTASMAAFNDGKFYNLSRLNPTKYAERP 178 (478)
T ss_pred hhhhhhhhhccCCcceeehhhcCchhhccCh
Confidence 111233457777777778888 88888
No 358
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=36.37 E-value=3.9e+02 Score=25.58 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=36.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002878 37 TSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKE 99 (872)
Q Consensus 37 ~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~e 99 (872)
.....+.+...+..++-.+.+.+.-+.......+.+.....-++..+.....+++.|...+..
T Consensus 44 ~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ 106 (139)
T PF05615_consen 44 SQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEE 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666655555566666655555555555555555555555544
No 359
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.13 E-value=3.2e+02 Score=24.40 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002878 128 LASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEII 174 (872)
Q Consensus 128 l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l 174 (872)
+...++.+..+...|..+|.........+..--.+++.+|..+.+.|
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555455555555444444
No 360
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.11 E-value=5.4e+02 Score=27.13 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 391 EKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSF 431 (872)
Q Consensus 391 ~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~ 431 (872)
..|+..+.++..+......+-..-..++.++..+......+
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333333333444433333333
No 361
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=35.73 E-value=6.1e+02 Score=27.62 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhHHHH
Q 002878 403 LISKKIETELLVSKLEKEIDSLLENLRS----FENKLQDQLLKISSLEMENK 450 (872)
Q Consensus 403 L~~~~e~le~~i~eLe~ei~~l~~ei~e----~E~~~e~Le~~l~~Le~~~~ 450 (872)
+..........+..|-++|....+.|.+ +.+++..+-.+.-++...++
T Consensus 239 Ie~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~ls 290 (384)
T KOG0972|consen 239 IEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLS 290 (384)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333332 33444444444443333333
No 362
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.58 E-value=1.8e+02 Score=31.37 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHHHHHhhH
Q 002878 270 DSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSLTFMEKFYQLN 315 (872)
Q Consensus 270 d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl~ 315 (872)
-++..+|+.++.++..|.+.+..+..++..+.+.++.++..++...
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888888888888888887777654
No 363
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=35.31 E-value=4.6e+02 Score=26.02 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=7.5
Q ss_pred HhhhHHHHHHHHHHHHh
Q 002878 661 KLKSEHEVQMKALQCQH 677 (872)
Q Consensus 661 ~~~~~~e~qik~lq~~~ 677 (872)
.++.+...++..|-|.+
T Consensus 121 ~~~~~~~~~~i~~~~~i 137 (155)
T PRK06569 121 QFRTNKSEAIIKLAVNI 137 (155)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 44444444444444433
No 364
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=35.12 E-value=2.7e+02 Score=28.59 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=12.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002878 236 EMHIDLQSKEDEIKLLMITKENLEKE 261 (872)
Q Consensus 236 ~~~~~L~~~~e~l~~l~~~~~~lEKe 261 (872)
.+..+|..+++|++.|..-+..-..+
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~e 189 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQE 189 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555444433333
No 365
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.12 E-value=3.5e+02 Score=24.62 Aligned_cols=12 Identities=8% Similarity=0.243 Sum_probs=4.3
Q ss_pred HHHhHHhHHHHH
Q 002878 477 KEMLVDSIEKQF 488 (872)
Q Consensus 477 Le~kiesLe~El 488 (872)
++.++..+..++
T Consensus 82 l~~~~~~l~~~~ 93 (105)
T cd00632 82 LERQEEDLQEKL 93 (105)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 366
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.03 E-value=3.4e+02 Score=32.42 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=16.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 37 TSGSFANLKLTAEKLVKEQASVKTDLEMANSKL 69 (872)
Q Consensus 37 ~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~ki 69 (872)
.+..+..++.++..+..++..++..+..+...+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444444443
No 367
>PF14282 FlxA: FlxA-like protein
Probab=35.02 E-value=3.1e+02 Score=25.20 Aligned_cols=47 Identities=6% Similarity=0.155 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHh
Q 002878 53 KEQASVKTDLEMANSKLKKSME----HVRILEEKLQNAVNENAKLKVKQKE 99 (872)
Q Consensus 53 ~e~e~lq~el~e~~~kiek~~~----~i~lleeri~~l~~~~~~L~~~i~e 99 (872)
..+..++..|..+..+|..+.. .......++..+...+..|...|..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~q 69 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQ 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443 2223344444444444444444443
No 368
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=34.28 E-value=5.1e+02 Score=26.27 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 116 TLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQ 159 (872)
Q Consensus 116 ~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rq 159 (872)
....++...-.++..+...++.+|..+|.+|+-.+..+..++..
T Consensus 50 ~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~e 93 (178)
T PF14073_consen 50 RAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKE 93 (178)
T ss_pred cccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455566666666777777776666666666655544
No 369
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=34.24 E-value=7.9e+02 Score=28.44 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------
Q 002878 354 KDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEID----------- 422 (872)
Q Consensus 354 ~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~----------- 422 (872)
...+...+..+..++..+......... .--..-++.-...|..+.+.|.....+|+..|..|..++.
T Consensus 175 ~~~~~~sm~~i~~k~~~~k~~~~~~~~--~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qL 252 (426)
T smart00806 175 FTEIKESIKDILEKIDKFKSSSLSASG--SSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQL 252 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC--CcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 344555566666666655543111110 0011111233456777788888888888888888888744
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 423 -SLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNL 470 (872)
Q Consensus 423 -~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~l 470 (872)
....++..+...+..++.-+..- --.|+.-|+.+++.+.++-.-+
T Consensus 253 e~v~kdi~~a~keL~~m~~~i~~e---KP~WkKiWE~EL~~VcEEqqfL 298 (426)
T smart00806 253 ETVQKELETARKELKKMEEYIDIE---KPIWKKIWEAELDKVCEEQQFL 298 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555544444321 1235666777777665544443
No 370
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.93 E-value=3.2e+02 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 002878 73 MEHVRILEEKLQNA 86 (872)
Q Consensus 73 ~~~i~lleeri~~l 86 (872)
..++..++.++.++
T Consensus 48 ~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 48 DRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHhC
Confidence 33333333333333
No 371
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=33.65 E-value=8.3e+02 Score=28.50 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 146 ISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDK 193 (872)
Q Consensus 146 l~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k 193 (872)
+..+......+..++.++...+...--.+.....++..+......+..
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~ 334 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELR 334 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555544444445555555555555544433
No 372
>PRK00736 hypothetical protein; Provisional
Probab=33.22 E-value=2.9e+02 Score=23.30 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002878 390 GEKISRLESEAEALISKKIETELLVSKLEKEID 422 (872)
Q Consensus 390 e~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~ 422 (872)
+.++.+.+.-++.|...+......|..|...+.
T Consensus 11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333333333333333
No 373
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.20 E-value=4.3e+02 Score=25.03 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002878 124 TLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQK 157 (872)
Q Consensus 124 ~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~ 157 (872)
.+..+..++...-..+..++.++.++...+.+++
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444444444444444444443
No 374
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.03 E-value=8.1e+02 Score=28.24 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=15.6
Q ss_pred HHHHhhhHHHHHHHHHHHHhh
Q 002878 658 KTTKLKSEHEVQMKALQCQHE 678 (872)
Q Consensus 658 ~~~~~~~~~e~qik~lq~~~e 678 (872)
.+.+++..|+.+|.+++..+.
T Consensus 404 ~~~~~r~e~~~~i~aI~l~~~ 424 (446)
T KOG4438|consen 404 EIARGREELESQIVAITLECI 424 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888876543
No 375
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.77 E-value=8e+02 Score=28.06 Aligned_cols=62 Identities=24% Similarity=0.267 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 002878 390 GEKISRLESEAEALISKKIETELLVSKLEKEIDS----LLENLRSFENKLQDQLLKISSLEMENKE 451 (872)
Q Consensus 390 e~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~----l~~ei~e~E~~~e~Le~~l~~Le~~~~~ 451 (872)
...-+.|...++.+...+.+++..+.....++.. +..+....+..+..+...++.+..++..
T Consensus 298 qkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~ 363 (542)
T KOG0993|consen 298 QKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQK 363 (542)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677788888888888888877777554 4444445555556666666655554443
No 376
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.70 E-value=3.3e+02 Score=23.53 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=11.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 002878 347 FFSIASEKDALQLVNQELNSKII 369 (872)
Q Consensus 347 ~~~l~~e~~~L~~el~eL~~ql~ 369 (872)
+..+..+|-.|.-.+--|+..+.
T Consensus 9 i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 9 IDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Confidence 33344455555555555555554
No 377
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.63 E-value=5.3e+02 Score=25.91 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002878 88 NENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTE--TLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQK 157 (872)
Q Consensus 88 ~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~--~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~ 157 (872)
.+.+.|...+..++.+.+.|....+...+++..|.+ ++.+++..|+.+.+.++....-+..+.......+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 344556666666666666666666666666666666 4455666666666666666665555555444433
No 378
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.24 E-value=7.5e+02 Score=31.25 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=16.7
Q ss_pred cCcCCccccchhhhhhhccc--cCccccCCCCCCC
Q 002878 2 QKLGFPSVKSLDQFKSLSRS--AKSFSFSSRPSTD 34 (872)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 34 (872)
.+|||+-+. +.+...+.| ++-..-.-.|++|
T Consensus 7 ~~Le~~~i~--~~l~~~~~t~~Gk~~l~~l~P~~~ 39 (782)
T PRK00409 7 RVLEFNKIK--EQLKTFAASELGKEKVLQLDPETD 39 (782)
T ss_pred hhCCHHHHH--HHHHhHcCCHHHHHHHHcCCCCCC
Confidence 357888764 556666666 2222223456544
No 379
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.04 E-value=6.1e+02 Score=26.45 Aligned_cols=8 Identities=13% Similarity=0.410 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 002878 585 ADKTIGEM 592 (872)
Q Consensus 585 le~~l~e~ 592 (872)
++..|.++
T Consensus 193 l~~~l~~l 200 (219)
T TIGR02977 193 LEDEFAEL 200 (219)
T ss_pred HHHHHHHh
Confidence 44444444
No 380
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.88 E-value=7.4e+02 Score=31.27 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 585 ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQ 626 (872)
Q Consensus 585 le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~ 626 (872)
++....+++.+....+...+++....|...+.+.+.++.++.
T Consensus 548 l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 548 LEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555556666655555555444
No 381
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=31.18 E-value=1.6e+02 Score=23.15 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Q 002878 653 NELREKTTKLKSEHEVQMKALQCQHEDECR 682 (872)
Q Consensus 653 ~~~~~~~~~~~~~~e~qik~lq~~~ee~~~ 682 (872)
.++..++..|+..||..|.+|+.+|.-.-|
T Consensus 11 ~eL~~rl~~LD~~ME~Eieelr~RY~~KRq 40 (49)
T PF11629_consen 11 EELQQRLASLDPEMEQEIEELRQRYQAKRQ 40 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 367888999999999999999999987633
No 382
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=30.70 E-value=3.1e+02 Score=22.71 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 257 NLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQ 296 (872)
Q Consensus 257 ~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~ 296 (872)
.+..+....+..+-.+..+++..+..+..|...|..+.-.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443444444445555555555555555555555443
No 383
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=30.49 E-value=6.5e+02 Score=26.32 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=11.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 37 TSGSFANLKLTAEKLVKEQASVKTDL 62 (872)
Q Consensus 37 ~~~~l~~lk~~l~~l~~e~e~lq~el 62 (872)
+.+....++.-+......++-....+
T Consensus 95 ~~~d~~~w~~al~na~a~lehq~~R~ 120 (221)
T PF05700_consen 95 KSNDVEAWKEALDNAYAQLEHQRLRL 120 (221)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445554444444444443333
No 384
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=30.34 E-value=9.1e+02 Score=27.96 Aligned_cols=114 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHhhHHHHHHHHHhHhhhhhhh
Q 002878 45 KLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV------NENAKLKVKQKEDEKLWKGLESKFSSTKTLS 118 (872)
Q Consensus 45 k~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~------~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~ 118 (872)
..++..+..++..+++-+......+....+.+..--.....+. ..++-...-.+. |...-..+-+.+
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~k-------L~~~Sd~lltkV 226 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKK-------LSEDSDSLLTKV 226 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHH-------HHHHHHHHHHHH
Confidence 4556666666666666655555555444444333322222221 122222222222 222233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 119 DQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 119 ~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
++|+..|+.+- +.=+....+-...++..+.+.+..++..+..+..-+
T Consensus 227 DDLQD~vE~LR--kDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i 273 (426)
T smart00806 227 DDLQDIIEALR--KDVAQRGVRPSKKQLETVQKELETARKELKKMEEYI 273 (426)
T ss_pred HHHHHHHHHHH--HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444442 222333445555666666666666666655555544
No 385
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=30.31 E-value=4.4e+02 Score=31.16 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=63.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhh
Q 002878 35 SLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSST 114 (872)
Q Consensus 35 ~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~ 114 (872)
-.|+.+...++..++.--.++-.|...+..+..+...+..++.- +...-..+-+.+..+|-.-=+++. -.-.+...
T Consensus 497 I~S~eqr~~Yk~dF~~eY~EYreLharve~vs~rF~~Lea~L~s---rls~gS~ey~~i~~qI~qEYeki~-~dp~y~ee 572 (604)
T KOG4796|consen 497 ISSLEQRQRYKKDFEAEYDEYRELHARVETVSRRFRQLEAQLKS---RLSPGSPEYKQIEKQILQEYEKIR-KDPNYMEE 572 (604)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCCCCcHHHHHHHHHHHHHHhh-cCccHHHH
Confidence 46778888999999998888888888888888887777766651 111111222223333211111122 33456677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 002878 115 KTLSDQLTETLQHLASQVQDAEK 137 (872)
Q Consensus 115 k~~~~~l~~~l~~l~~~i~~~E~ 137 (872)
+..|.-|-..|.+|...|.+.++
T Consensus 573 K~RceYLhsKLaHIK~lI~efDk 595 (604)
T KOG4796|consen 573 KQRCEYLHSKLAHIKTLIGEFDK 595 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888777777666
No 386
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=30.29 E-value=3.7e+02 Score=31.91 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 145 KISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREER 191 (872)
Q Consensus 145 el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~ 191 (872)
++-+++.+..+++..++.++.+.+++...+-+.+.+|..|+...+..
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 33344444444444444444445555444544444555444444443
No 387
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=29.94 E-value=1.2e+03 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=11.0
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHH
Q 002878 227 TESLNSKVEEMHIDLQSKEDEIK 249 (872)
Q Consensus 227 l~~l~~el~~~~~~L~~~~e~l~ 249 (872)
++-|+.+-.+++.+|..+..++.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlr 411 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLR 411 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Confidence 44445555555555544444443
No 388
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=29.74 E-value=8.6e+02 Score=27.51 Aligned_cols=51 Identities=6% Similarity=0.077 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVN 88 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~ 88 (872)
+-++...-.++......++.+.+.+..+.++++.....+....+-+.-...
T Consensus 138 ~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~ 188 (464)
T KOG4637|consen 138 GKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEE 188 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345566667777778888888888888888888888888777766665553
No 389
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.69 E-value=1.3e+02 Score=27.31 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=26.3
Q ss_pred chhhhhhhccccCccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 11 SLDQFKSLSRSAKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLE 63 (872)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~ 63 (872)
-|..|||.+|...+ .+..|+.+..+|.-+.++..+.....+++.+...+.
T Consensus 37 EL~kyk~~~g~~d~---~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~ 86 (96)
T PF11365_consen 37 ELNKYKSKYGDLDS---LAKLSEGGSPSGREAELQEELKLAREQINELSGKVM 86 (96)
T ss_pred HHHHHHHhcCCCcc---cccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHH
Confidence 36679999886443 223233333344445556665555555544444443
No 390
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.52 E-value=6.3e+02 Score=25.82 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=28.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 37 TSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRIL 79 (872)
Q Consensus 37 ~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~ll 79 (872)
.|-....++..+..+..+++.++..+..+...++.........
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3455667777777777777777777777777776665444433
No 391
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=29.43 E-value=7.2e+02 Score=26.48 Aligned_cols=56 Identities=4% Similarity=0.054 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHH
Q 002878 254 TKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSLTFME 309 (872)
Q Consensus 254 ~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~ 309 (872)
...++.+....++..-++|...|+.+..-...-+......=..+.+++.+...|+.
T Consensus 158 ~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K 213 (242)
T cd07671 158 SQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILR 213 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445566666555555544444444444444455555544443
No 392
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.02 E-value=6.3e+02 Score=25.71 Aligned_cols=34 Identities=6% Similarity=0.245 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002878 142 FEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIIT 175 (872)
Q Consensus 142 lE~el~e~~~kl~el~rql~dl~akLee~e~~l~ 175 (872)
|..+++.....-+.+...+.-++..+..+...+.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433333
No 393
>PF15294 Leu_zip: Leucine zipper
Probab=28.70 E-value=8e+02 Score=26.78 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=26.7
Q ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002878 223 NRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQM 267 (872)
Q Consensus 223 ~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~ 267 (872)
...++..++.+...+..+|..++.++........+++....+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556666666666666666666666666666555
No 394
>PRK11519 tyrosine kinase; Provisional
Probab=28.52 E-value=1.2e+03 Score=28.94 Aligned_cols=21 Identities=5% Similarity=0.056 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002878 245 EDEIKLLMITKENLEKEKSDL 265 (872)
Q Consensus 245 ~e~l~~l~~~~~~lEKek~~L 265 (872)
++++..+.......|.....+
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 395
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.33 E-value=1.1e+03 Score=28.36 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 510 KKLEDQITENQAQLTAAESRLSEAKKQY 537 (872)
Q Consensus 510 ~~le~~L~elr~q~e~~e~~~~eae~~y 537 (872)
..+...|..+...+..+...+.++....
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~~l~~~~ 274 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELAELKEEE 274 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777766666665555543
No 396
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.99 E-value=3.6e+02 Score=24.96 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 002878 428 LRSFENKLQDQ 438 (872)
Q Consensus 428 i~e~E~~~e~L 438 (872)
+..+...+..+
T Consensus 24 ~~~LK~~~~~l 34 (107)
T PF06156_consen 24 LEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 397
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=27.98 E-value=5.9e+02 Score=24.99 Aligned_cols=12 Identities=33% Similarity=0.302 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 002878 393 ISRLESEAEALI 404 (872)
Q Consensus 393 i~~Le~e~e~L~ 404 (872)
+.+|+..++.|.
T Consensus 96 ie~l~k~~~~l~ 107 (145)
T COG1730 96 IEFLKKRIEELE 107 (145)
T ss_pred HHHHHHHHHHHH
Confidence 444443333333
No 398
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=27.77 E-value=6.8e+02 Score=25.67 Aligned_cols=12 Identities=0% Similarity=0.166 Sum_probs=4.7
Q ss_pred CCCCCCCChhhH
Q 002878 30 RPSTDSLTSGSF 41 (872)
Q Consensus 30 ~~~~~~~~~~~l 41 (872)
++.+-+|-.+.-
T Consensus 11 ~~~as~IA~kAA 22 (188)
T PF05335_consen 11 KQKASNIAQKAA 22 (188)
T ss_pred CcchhHHHHHHH
Confidence 333334444433
No 399
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.59 E-value=3.5e+02 Score=25.17 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhh------------------hhHHHHHHHH----
Q 002878 69 LKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKT------------------LSDQLTETLQ---- 126 (872)
Q Consensus 69 iek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~------------------~~~~l~~~l~---- 126 (872)
++.+...+..+..++..+...+..+...+.+...-+..+..--..... ..+.+.-.+-
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred ---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 127 ---HLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSA 170 (872)
Q Consensus 127 ---~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~ 170 (872)
.+...+..+++.+..++..+..+...+..+..++..+...+..+
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 400
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.46 E-value=2.7e+02 Score=29.80 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV 87 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~ 87 (872)
.++...++....+|++++......+..+..+++.++..-.-|-||+.++.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666555555555555555555554
No 401
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.36 E-value=30 Score=36.52 Aligned_cols=21 Identities=57% Similarity=0.904 Sum_probs=17.4
Q ss_pred cccccccCCCCCCC----CCCCCCC
Q 002878 852 IGDLFSEGSLNPYA----DDPYAFD 872 (872)
Q Consensus 852 ~~~~~~~~~~~~~~----~~~~~~~ 872 (872)
-|++||-||=+||| |.-|-||
T Consensus 193 ~G~~FSVGSGs~yAYGVLDsgYr~d 217 (285)
T KOG0175|consen 193 SGDLFSVGSGSTYAYGVLDSGYRYD 217 (285)
T ss_pred cCceEeecCCCceeEEeeccCCCCC
Confidence 38999999999998 6667665
No 402
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=27.22 E-value=4e+02 Score=22.77 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002878 352 SEKDALQLVNQELNSKIIKLQ 372 (872)
Q Consensus 352 ~e~~~L~~el~eL~~ql~~L~ 372 (872)
.++..|...+..|..++..|.
T Consensus 42 ~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 42 QENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 403
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.92 E-value=3.5e+02 Score=22.05 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=9.1
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHH
Q 002878 106 GLESKFSSTKTLSDQLTETLQHL 128 (872)
Q Consensus 106 ~Le~k~s~~k~~~~~l~~~l~~l 128 (872)
.|.+.++.+...+++|...+..+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444433333
No 404
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.86 E-value=6.6e+02 Score=25.23 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=33.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 240 DLQSKEDEIKLLMITKENLEKEKSDLQMSR--DSFEKKLVTSIREIKNLEGFVHVFAA 295 (872)
Q Consensus 240 ~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~--d~~~~~l~~le~e~~~l~~~l~~~~~ 295 (872)
++..+.+.+..++..+...+.++..|+.-+ .++...+..|.+++......|..+.+
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666666666666666665443 55666666666666666666655554
No 405
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=26.84 E-value=5.8e+02 Score=25.30 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 002878 463 KEEEINNLKQEHEKKEMLVDSIEKQFCQLQNIL 495 (872)
Q Consensus 463 ~eeele~lrk~l~~Le~kiesLe~El~~Lk~~l 495 (872)
++.+++.+..++..|..+..+++..+..|+.-+
T Consensus 52 ~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL 84 (162)
T PF05565_consen 52 LEADIEAIKAEIKRLQERKKSIENRIDRLKEYL 84 (162)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 406
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=26.72 E-value=5.3e+02 Score=24.03 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002878 594 RKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELREKTTKLKSEHEVQMKAL 673 (872)
Q Consensus 594 ~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~~a~~~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~l 673 (872)
............+++..|...+.+...++.....+-..-.....+....++.++..++..++..-...+...+..++-+|
T Consensus 43 ~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~~~~l 122 (132)
T PF00430_consen 43 EELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQEIVDL 122 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=26.64 E-value=1.1e+03 Score=27.52 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002878 455 KFHAEMQKKEEEINNLKQE 473 (872)
Q Consensus 455 ~lq~el~~~eeele~lrk~ 473 (872)
..+..+.+...+|..+...
T Consensus 398 ~~qski~dk~~el~kl~~~ 416 (554)
T KOG4677|consen 398 KKQSKIPDKQYELTKLAAR 416 (554)
T ss_pred hhhccCcchHHHHHHHHHH
Confidence 3445555555555555444
No 408
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.38 E-value=6.4e+02 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 44 LKLTAEKLVKEQASVKTDLEMANSKLKKSME 74 (872)
Q Consensus 44 lk~~l~~l~~e~e~lq~el~e~~~kiek~~~ 74 (872)
.+..+.....+++.++.+|...+..|+.+..
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444433
No 409
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=25.75 E-value=6.7e+02 Score=24.89 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHhhh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 002878 577 IVNMEKEK---ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAEN 653 (872)
Q Consensus 577 i~~L~~~~---le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~~a~~~~el~~~q~~~~~ 653 (872)
|..+.... ....+.+.+.... +......+++..|...+.+-..++......-........+....|..++..++..
T Consensus 35 i~~~le~R~~~I~~~l~~Ae~~k~-eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~ 113 (167)
T PRK14475 35 LAGALDAYAAKIQAELDEAQRLRE-EAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAER 113 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 002878 654 ELREKTTKLKSEHEVQMKAL 673 (872)
Q Consensus 654 ~~~~~~~~~~~~~e~qik~l 673 (872)
++..--.+....+..++-+|
T Consensus 114 ~I~~e~~~a~~el~~e~~~l 133 (167)
T PRK14475 114 KIAQAEAQAAADVKAAAVDL 133 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 410
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=25.71 E-value=1.1e+03 Score=27.63 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 002878 28 SSRPSTDSLTSGSFANLKLTAEKLVKEQAS 57 (872)
Q Consensus 28 ~~~~~~~~~~~~~l~~lk~~l~~l~~e~e~ 57 (872)
..-++||+.|.|+ ..+..++.+++.+...
T Consensus 74 ~~d~~pDPLsPgE-~~l~~Kl~eLE~e~k~ 102 (508)
T PF00901_consen 74 TGDEPPDPLSPGE-QGLQRKLKELEDEQKE 102 (508)
T ss_pred CCCCCCCCCCHhH-HHHHHHHHHHHHHHhh
Confidence 3458899999999 5677777777765543
No 411
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.55 E-value=3.4e+02 Score=23.04 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002878 171 EEIITKREKELEDLKIE 187 (872)
Q Consensus 171 e~~l~~~~~eLe~Lk~~ 187 (872)
...+.....++..+++.
T Consensus 60 ~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 60 KSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 412
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.20 E-value=1.3e+03 Score=27.93 Aligned_cols=246 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHh-hHhhHHHHHHHHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHH
Q 002878 281 REIKNLEGFVHVFAAQLVDL-DKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQL 359 (872)
Q Consensus 281 ~e~~~l~~~l~~~~~~l~el-dkk~~~f~~k~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~ 359 (872)
+++...-.+|++......-+ ...++.++..|..........+......|....+.... +.........
T Consensus 117 ~~l~~~Li~IHGQh~~q~Ll~~~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~-----------~~~~~~e~~~ 185 (557)
T COG0497 117 KELGQLLIDIHGQHEHQSLLKPELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELED-----------LQEKERERAQ 185 (557)
T ss_pred HHHHHhhheeeccchHHHhcChHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHH------HHH
Q 002878 360 VNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETE------LLVSKLEKEIDSL------LEN 427 (872)
Q Consensus 360 el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le------~~i~eLe~ei~~l------~~e 427 (872)
+.+-|+-++.+|.........- +.+..-..++...+.=.+.+..+..-+. ..+..+-.-+..+ ...
T Consensus 186 ~~d~L~fq~~Ele~~~l~~gE~--e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~ 263 (557)
T COG0497 186 RADLLQFQLEELEELNLQPGED--EELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGK 263 (557)
T ss_pred HHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChh
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhc
Q 002878 428 LRSFENKLQDQLLKISSLEMENKENMEKFHAE---MQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQ 504 (872)
Q Consensus 428 i~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~e---l~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~ 504 (872)
+.++.+.+.+..-.+..+..++......+.-+ +..+++.+..++.-...+-..++.+-.-...+...+......-..
T Consensus 264 l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~ 343 (557)
T COG0497 264 LSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEES 343 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhH
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 505 HNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDLMLES 543 (872)
Q Consensus 505 ~~~~~~~le~~L~elr~q~e~~e~~~~eae~~y~~~lee 543 (872)
...|+..+..++.+|..+-..+......+-..+..
T Consensus 344 ----~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~ 378 (557)
T COG0497 344 ----LEALEKEVKKLKAELLEAAEALSAIRKKAAKELEK 378 (557)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.14 E-value=1.2e+03 Score=27.76 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHH
Q 002878 76 VRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLT 122 (872)
Q Consensus 76 i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~ 122 (872)
+..+...++...++++.+.++++.+.+...-|+..+....-.-+.|.
T Consensus 590 ~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~ 636 (741)
T KOG4460|consen 590 VKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLM 636 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 414
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=25.05 E-value=4.5e+02 Score=23.33 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAV 87 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~ 87 (872)
+...+..+...+...++.+..++..+...+.....+-.-..+|++|..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 566666666666666666666666666666666666666666665543
No 415
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=24.93 E-value=2.1e+02 Score=34.94 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002878 357 LQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 357 L~~el~eL~~ql~~L~~~ 374 (872)
++.++..|+..+..-...
T Consensus 328 hE~Ei~~Lk~~~~~~k~I 345 (619)
T PF03999_consen 328 HEEEIERLKEEYESRKPI 345 (619)
T ss_dssp -------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 416
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.92 E-value=8.2e+02 Score=25.65 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002878 147 SSSMNAVDCQKQQMDHL 163 (872)
Q Consensus 147 ~e~~~kl~el~rql~dl 163 (872)
+..++..+.+.+|..++
T Consensus 175 e~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33333333333333333
No 417
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=24.80 E-value=1.5e+02 Score=27.72 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHH
Q 002878 49 EKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTET 124 (872)
Q Consensus 49 ~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~ 124 (872)
......-...-..+...++.|-.....|..+......+.....++...+.-+......|+.-+..+...+..+...
T Consensus 32 e~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~~~ 107 (116)
T PF05064_consen 32 EEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKLLSN 107 (116)
T ss_dssp -----------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444455555555555555555555555666666666666666666666666666555543
No 418
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.74 E-value=1.6e+03 Score=28.97 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=19.3
Q ss_pred HhhhhcCCCCccccCCcCcccccccccccCCC
Q 002878 770 KKVENVNTGSMISIPKHHKKVTHHEYEVETSN 801 (872)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (872)
+=|...|-|- ||.+-|+| |..=|.+++
T Consensus 987 RvVDEINQGM---Dp~NER~V--h~~mV~~ac 1013 (1072)
T KOG0979|consen 987 RVVDEINQGM---DPRNERKV--HDIMVNMAC 1013 (1072)
T ss_pred eehhhhhcCC---CchhHHHH--HHHHHHHhh
Confidence 4577777662 89899988 556677776
No 419
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=24.36 E-value=9e+02 Score=25.91 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHH
Q 002878 77 RILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLA 129 (872)
Q Consensus 77 ~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~ 129 (872)
.++...|.|+...-.+|..+..+...+-..+--.+..-.-++.+++..+..+.
T Consensus 104 rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK 156 (330)
T KOG2991|consen 104 RLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLK 156 (330)
T ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777666666666666555554444444444444444444444443
No 420
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.30 E-value=1.1e+03 Score=27.11 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 002878 453 MEKFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNI 494 (872)
Q Consensus 453 ~~~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~ 494 (872)
-++|...+.++..-+...+....+++.+...|..-+.+++..
T Consensus 243 PeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti 284 (446)
T KOG4438|consen 243 PEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTI 284 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 333444444444444444444444555555555544444444
No 421
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=24.24 E-value=1e+03 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHH
Q 002878 456 FHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEK 498 (872)
Q Consensus 456 lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~ 498 (872)
++..+.+...+.+.+|.++...+++...+..+...|+..+...
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdl 285 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDL 285 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555666667788888888888888888888887776543
No 422
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.09 E-value=8.1e+02 Score=25.33 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 002878 388 LAGEKISRLES 398 (872)
Q Consensus 388 ~le~~i~~Le~ 398 (872)
.+.+..-+|..
T Consensus 148 ~~~D~vL~LKH 158 (201)
T PF11172_consen 148 AFRDQVLYLKH 158 (201)
T ss_pred HHHHHHHHHhc
Confidence 33344444443
No 423
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=24.05 E-value=5.3e+02 Score=23.59 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=11.0
Q ss_pred HHHhHHHHHHHHHHHHHHH-HHHHHHHH
Q 002878 135 AEKNKEFFEDKISSSMNAV-DCQKQQMD 161 (872)
Q Consensus 135 ~E~~~~~lE~el~e~~~kl-~el~rql~ 161 (872)
++..+..++.+++++...| +++|..++
T Consensus 13 ae~~~~~ie~ElEeLTasLFeEAN~MVa 40 (100)
T PF06428_consen 13 AEQEKEQIESELEELTASLFEEANKMVA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444 33444433
No 424
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=24.02 E-value=58 Score=30.56 Aligned_cols=75 Identities=8% Similarity=0.154 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002878 101 EKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIIT 175 (872)
Q Consensus 101 ~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~ 175 (872)
..-+..+...++.....|......+..++..|.+....+..|...+..+...-..+.+.|.-+..+-.+++..+.
T Consensus 21 eeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~ 95 (116)
T PF05064_consen 21 EEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLD 95 (116)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666677777777777788888877777777766666666666655555555555555444444444443
No 425
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=23.83 E-value=8.2e+02 Score=25.28 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 598 QKLAECKEEAKQQLKRIQEEHAAIVISI 625 (872)
Q Consensus 598 ~~L~~~k~e~e~~l~~~~eE~e~~~~~~ 625 (872)
..+.+.+.+.+..+...+.+++..+...
T Consensus 133 ~i~~~A~~eae~ii~~A~~~Ie~Ek~~a 160 (205)
T PRK06231 133 ELEKEANRQANLIIFQARQEIEKERREL 160 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 426
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=23.70 E-value=7.6e+02 Score=24.87 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 590 GEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEY 629 (872)
Q Consensus 590 ~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~ 629 (872)
.+.+......+.+.+.+++..+...+.+++..+.....++
T Consensus 101 ~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l 140 (184)
T CHL00019 101 SEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQV 140 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555333333
No 427
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=23.58 E-value=4.8e+02 Score=31.89 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=5.3
Q ss_pred HHHHHHHhHhHHH
Q 002878 437 DQLLKISSLEMEN 449 (872)
Q Consensus 437 ~Le~~l~~Le~~~ 449 (872)
.+..++-.++..+
T Consensus 388 ~i~k~lPkle~~L 400 (619)
T PF03999_consen 388 RIQKKLPKLEEEL 400 (619)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH
Confidence 3434444444433
No 428
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.53 E-value=5.7e+02 Score=25.91 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002878 270 DSFEKKLVTSIREIKNLEGFVHVFAAQLVDL 300 (872)
Q Consensus 270 d~~~~~l~~le~e~~~l~~~l~~~~~~l~el 300 (872)
+.+..+++.+.+++...+.++..+..+...+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 429
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=23.51 E-value=1.1e+03 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 002878 243 SKEDEIKLLMITKENLEKEKSDL 265 (872)
Q Consensus 243 ~~~e~l~~l~~~~~~lEKek~~L 265 (872)
-.++++...+.-+..+++.|...
T Consensus 213 Lae~~lq~vq~~C~pLDkdk~~~ 235 (442)
T PF06637_consen 213 LAEEQLQKVQALCLPLDKDKFET 235 (442)
T ss_pred HHHHHHHHHHHHhcccchHHHHH
Confidence 35677777777788888777663
No 430
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.47 E-value=7.6e+02 Score=24.77 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Q 002878 666 HEVQMKALQCQHEDECRKLHEELHL 690 (872)
Q Consensus 666 ~e~qik~lq~~~ee~~~~~~~~~~~ 690 (872)
++..|+++..+++.++..+.-+...
T Consensus 125 ~~~ki~e~~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 125 QELKIQELNNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777776665555443
No 431
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.33 E-value=5.6e+02 Score=23.17 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHH
Q 002878 72 SMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLAS---QVQDAEKNKEFFEDKISS 148 (872)
Q Consensus 72 ~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~---~i~~~E~~~~~lE~el~e 148 (872)
+.+++........-+.+-.......-..+.....++...+..+......+...+..++. ++..++.-...|+.-..+
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 002878 149 SMNAVDCQ 156 (872)
Q Consensus 149 ~~~kl~el 156 (872)
+..++..+
T Consensus 92 LE~k~k~l 99 (99)
T PF10046_consen 92 LESKFKKL 99 (99)
T ss_pred HHHHhhcC
No 432
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.32 E-value=5e+02 Score=24.23 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 002878 416 KLEKEIDSLLENLRSFENKLQDQLLKISSLEME 448 (872)
Q Consensus 416 eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~ 448 (872)
.++..+..+..++.++...+..+..+...|..+
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444443333333333
No 433
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=23.30 E-value=1.6e+02 Score=26.93 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002878 388 LAGEKISRLESEAEALISK 406 (872)
Q Consensus 388 ~le~~i~~Le~e~e~L~~~ 406 (872)
.++.....++.++++|..+
T Consensus 12 ~ae~~~~~ie~ElEeLTas 30 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTAS 30 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444
No 434
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.03 E-value=4.7e+02 Score=27.83 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=4.1
Q ss_pred CCCCCCC
Q 002878 30 RPSTDSL 36 (872)
Q Consensus 30 ~~~~~~~ 36 (872)
|||+|++
T Consensus 218 ~~~~dh~ 224 (305)
T KOG3990|consen 218 RDPGDHM 224 (305)
T ss_pred CCCcchH
Confidence 6666654
No 435
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=22.89 E-value=8.7e+02 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 524 TAAESRLSEAKKQYDLMLESKQLELS 549 (872)
Q Consensus 524 e~~e~~~~eae~~y~~~leeLq~e~~ 549 (872)
..+...+.++...|...+.+|+..+-
T Consensus 32 ~~i~~~r~~l~s~y~~q~~~Lq~qLl 57 (206)
T PF14988_consen 32 EEIQRERQELVSRYAKQTSELQDQLL 57 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556655555554444
No 436
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.74 E-value=1.1e+03 Score=26.18 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 002878 141 FFEDKISSSMNAVDCQ 156 (872)
Q Consensus 141 ~lE~el~e~~~kl~el 156 (872)
.|-+.+.++..++.++
T Consensus 52 ~fA~~ld~~~~kl~~M 67 (301)
T PF06120_consen 52 EFADSLDELKEKLKEM 67 (301)
T ss_pred HHHHhhHHHHHHHHhc
Confidence 3344444444444443
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.73 E-value=1.6e+03 Score=28.32 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 585 ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQ 626 (872)
Q Consensus 585 le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~ 626 (872)
++.....++.+....+...+++....|...+.+.++++.++.
T Consensus 553 l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555556666666666666666665554
No 438
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.70 E-value=6.7e+02 Score=25.40 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHH
Q 002878 466 EINNLKQEHEKKEMLVDSIEKQFCQ 490 (872)
Q Consensus 466 ele~lrk~l~~Le~kiesLe~El~~ 490 (872)
+++.+++++...+..++.|.++.+.
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433333333444433333
No 439
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.67 E-value=9.2e+02 Score=25.44 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002878 341 DQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQC-LEECRLAGEKISRLESEAEALISKKIETELLVSKLEK 419 (872)
Q Consensus 341 ~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql-~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ 419 (872)
......++.+......++.+++.+......+...-..+...= ++.-+.+-.++..|+..+..+...+..+...+..+..
T Consensus 41 ~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~ 120 (225)
T COG1842 41 AKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKK 120 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555554443322111000 1111222233344444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002878 420 EIDSLLENLRSFENKLQ 436 (872)
Q Consensus 420 ei~~l~~ei~e~E~~~e 436 (872)
.+..+...|.+++..+.
T Consensus 121 ~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 121 QLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 440
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.63 E-value=1.1e+03 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 139 KEFFEDKISSSMNAVDCQKQQMDHLSLK 166 (872)
Q Consensus 139 ~~~lE~el~e~~~kl~el~rql~dl~ak 166 (872)
+..++.++..+..++..+...+.++..+
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555544444444443
No 441
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=22.54 E-value=1e+03 Score=25.93 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH----hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Q 002878 611 LKRIQEEHAAIVISIQQEYDKKEMNLKA----EHIGELKCAELQAENELREKTTKLKSEHEVQMKALQCQHEDECRKLHE 686 (872)
Q Consensus 611 l~~~~eE~e~~~~~~~~~~~~k~~~~~a----~~~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~lq~~~ee~~~~~~~ 686 (872)
....+.++...+.+.+.++++|-..+.- .+.+|+-+.| -+-....+.+|...|.+|...+.+-.+..-.+..
T Consensus 97 t~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~Q----Ees~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~ 172 (276)
T PF12037_consen 97 TLQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQ----EESVIRQEQMRRATEEQILAQRRQTEEEEAELRR 172 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455555555555666666555554422 4555555554 3566667777777777777766665555455555
Q ss_pred HHHhhhcH
Q 002878 687 ELHLQKSK 694 (872)
Q Consensus 687 ~~~~q~~~ 694 (872)
+...-+..
T Consensus 173 e~~~~k~~ 180 (276)
T PF12037_consen 173 ETERAKAE 180 (276)
T ss_pred HHHHHHHH
Confidence 55554444
No 442
>PF11501 Nsp1: Non structural protein Nsp1; InterPro: IPR021590 Nsp1 is the N-terminal cleavage product from the viral replicase that mediates RNA replication and processing []. The specific function of the protein is unknown however the structure has been determined. The protein has a novel alpha/beta fold formed by a 6 stranded beta barrel with an alpha helix covering one end of the barrel and another helix alongside the barrel []. Nsp1 could be involved in the degradation of mRNA. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2HSX_A 2GDT_A.
Probab=22.39 E-value=17 Score=32.26 Aligned_cols=55 Identities=25% Similarity=0.324 Sum_probs=25.3
Q ss_pred cccccCCCCcccccCCCCCCccccccccCCCCCCCCCCccccccc-------------CCCCC-CCCCCCCC
Q 002878 814 TVMFEDPGKRKKMNTTQAKTPRSVAKGATGGANPHPSNIGDLFSE-------------GSLNP-YADDPYAF 871 (872)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~ 871 (872)
|+-|-+-.+ -.||..--|--++|.--+.+.|||..|-+|..+ |-|=| |..|||+|
T Consensus 38 t~g~V~l~K---G~l~qL~qP~vfv~R~da~~t~h~~~ivELvAe~~GvqYGR~G~~lGvLVP~~GetP~gY 106 (115)
T PF11501_consen 38 TCGFVKLYK---GVLPQLEQPYVFVKRNDANPTNHGHDIVELVAERDGVQYGRSGTALGVLVPHVGETPIGY 106 (115)
T ss_dssp -EEEE---T---TSGGGS-S-EEEEE--SS-----SS---EEEEESS-TTTTSSSS--EEEEE--S---SEE
T ss_pred ceEEEEecc---cccccccCCEEEEEecCCCCCCCCcchHHhhhhhcCcccccccceeeEeecccCCCccee
Confidence 455555554 678888888889998888888999999887654 34555 77899976
No 443
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.23 E-value=1.2e+03 Score=26.75 Aligned_cols=6 Identities=50% Similarity=1.592 Sum_probs=2.4
Q ss_pred HHHhcC
Q 002878 706 WKVMGN 711 (872)
Q Consensus 706 ~~~~~~ 711 (872)
|+|-|.
T Consensus 202 W~v~~~ 207 (459)
T KOG0288|consen 202 WNVLGE 207 (459)
T ss_pred hhcccc
Confidence 444333
No 444
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.06 E-value=1.2e+03 Score=26.66 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHH----hh--HHHHHHHHHhhHH
Q 002878 177 REKELEDLKIEREERDKLYRDEC-CRTSNLMDKNDAM----IKKLEVTVADNRLETESL----NS--KVEEMHIDLQSKE 245 (872)
Q Consensus 177 ~~~eLe~Lk~~lee~~k~~~~~~-~~~~~l~~e~~~l----~e~~Eee~~e~k~el~~l----~~--el~~~~~~L~~~~ 245 (872)
....+....+++++..-.+.... .-+.++++.+..- +.+.......++.++..+ .+ ....+++++..+.
T Consensus 68 k~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~ 147 (542)
T KOG0993|consen 68 KSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAK 147 (542)
T ss_pred hHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 55566666666666654443221 2223444444331 122222222233333333 11 3344666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 002878 246 DEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREI 283 (872)
Q Consensus 246 e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~ 283 (872)
+.-+.+......++|++..|..-+......|+.+++..
T Consensus 148 Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~ 185 (542)
T KOG0993|consen 148 EDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAK 185 (542)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 66677777777888888888777766666666666443
No 445
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.04 E-value=6.4e+02 Score=26.00 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002878 354 KDALQLVNQELNSKIIKLQKTQ 375 (872)
Q Consensus 354 ~~~L~~el~eL~~ql~~L~~~~ 375 (872)
.-.|..++.+|...|.......
T Consensus 98 evrLkrELa~Le~~l~~~~~~~ 119 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAA 119 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666776666655544
No 446
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.01 E-value=8e+02 Score=24.48 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002878 598 QKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKA 638 (872)
Q Consensus 598 ~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~~a 638 (872)
..+...+.+.++.+...+.+++........++......++.
T Consensus 103 ~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~ 143 (175)
T PRK14472 103 EITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAV 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555444444444444433333333
No 447
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.98 E-value=1.3e+03 Score=28.99 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=15.7
Q ss_pred cCcCCccccchhhhhhhccc--cCccccCCCCCCC
Q 002878 2 QKLGFPSVKSLDQFKSLSRS--AKSFSFSSRPSTD 34 (872)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 34 (872)
+.|+|+-++.. ....+.| ++-...+-.|++|
T Consensus 7 ~~Lef~~i~~~--l~~~~~t~~gk~~~~~l~P~~~ 39 (771)
T TIGR01069 7 IKLEFDKVKEN--LLKQTFTPLGKEDAIGLKPPKS 39 (771)
T ss_pred HhcCHHHHHHH--HHHHcCCHHHHHHHhcCCCCCC
Confidence 46788877543 3333333 3333334466654
No 448
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.79 E-value=9.8e+02 Score=25.41 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 416 KLEKEIDSLLENLRSFENKLQDQLLKIS 443 (872)
Q Consensus 416 eLe~ei~~l~~ei~e~E~~~e~Le~~l~ 443 (872)
.|+.+|..++..+.+--.....+-.++.
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~~ 32 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKVE 32 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544444
No 449
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.75 E-value=3.6e+02 Score=23.91 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 002878 254 TKENLEKEKSDLQMSRDSFEKKLVTSIREIKNL 286 (872)
Q Consensus 254 ~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l 286 (872)
.+..+++++..+......|..++..|-+++..-
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~ 69 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRKENRKS 69 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 344556666666666666666666666665443
No 450
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=21.74 E-value=6.1e+02 Score=23.01 Aligned_cols=18 Identities=0% Similarity=-0.062 Sum_probs=6.9
Q ss_pred HHHhHHhHHHHHHHHHHH
Q 002878 477 KEMLVDSIEKQFCQLQNI 494 (872)
Q Consensus 477 Le~kiesLe~El~~Lk~~ 494 (872)
++..+..+..-+.|.+..
T Consensus 84 l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 84 LTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444333333333
No 451
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=21.63 E-value=9.4e+02 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002878 553 KEISQRNDQEINDIRRKYEVEKLEIVNMEKEK 584 (872)
Q Consensus 553 eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~ 584 (872)
++..++...+.+++.+++..|+.++..|...+
T Consensus 213 ~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 213 DEFQQHYVAEKSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333555778888888888888888877655
No 452
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.57 E-value=1.3e+03 Score=26.86 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002878 103 LWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAV 153 (872)
Q Consensus 103 ~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl 153 (872)
-+..|+.++..++..++.|...+..-+-+|..+..++..++.++...+.++
T Consensus 287 lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 287 LIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555544332222333333444444444444333333
No 453
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.46 E-value=9.7e+02 Score=27.09 Aligned_cols=128 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHH---HHHHhHHH----HHHHHHHHHHHHHH--
Q 002878 544 KQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK--ADKTIG---EMERKCDQ----KLAECKEEAKQQLK-- 612 (872)
Q Consensus 544 Lq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~---e~e~r~~~----~L~~~k~e~e~~l~-- 612 (872)
|+.......-.+. ..+....+.+..++.+...++++.-+. |..+|. ++..++.. .+.+.-+..-..+.
T Consensus 3 Lk~~nR~~~~~~~-~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~ 81 (355)
T PF09766_consen 3 LKQLNRAAQFRIK-KAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDP 81 (355)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhcccc
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002878 613 --RIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELREKTTKLKSEHEVQMKALQC 675 (872)
Q Consensus 613 --~~~eE~e~~~~~~~~~~~~k~~~~~a~~~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~lq~ 675 (872)
....+|+.+.+++.-++..... -+.--.||...++++..++..+-..| ..+..++++|..
T Consensus 82 ~~~~~~~H~lml~RL~~EL~~Rk~--L~~~~~el~~~k~~l~~~~~~k~~~L-~~l~~~L~~l~~ 143 (355)
T PF09766_consen 82 ELTEDDEHQLMLARLEFELEQRKR--LEEQLKELEQRKKKLQQENKKKKKFL-DSLPPQLKSLKK 143 (355)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHH
No 454
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.95 E-value=1.3e+03 Score=26.64 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 120 QLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLS 164 (872)
Q Consensus 120 ~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~ 164 (872)
++..+-..+-.++..++++-..+...+.+.+.+...++.+.+...
T Consensus 187 ~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~ 231 (447)
T KOG2751|consen 187 NLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYW 231 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444333333
No 455
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=20.90 E-value=7.5e+02 Score=23.72 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 144 DKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 144 ~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
.-+...+.+|+..+.+++.+..++.....-+..+..+|......+.+
T Consensus 8 rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 8 RNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666666666655555554
No 456
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=20.86 E-value=1.5e+02 Score=28.77 Aligned_cols=28 Identities=29% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhH---HHHHHHHHHHHhhHHH
Q 002878 654 ELREKTTKLKSE---HEVQMKALQCQHEDEC 681 (872)
Q Consensus 654 ~~~~~~~~~~~~---~e~qik~lq~~~ee~~ 681 (872)
+-.|++.+++++ -|.|.|+||.++++-|
T Consensus 17 Ek~ELLdrfd~ER~eWE~Q~kemq~kieql~ 47 (141)
T PF14818_consen 17 EKMELLDRFDRERQEWEQQWKEMQRKIEQLQ 47 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777665 8999999999999763
No 457
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.82 E-value=3.8e+02 Score=31.44 Aligned_cols=41 Identities=5% Similarity=0.023 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002878 141 FFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKEL 181 (872)
Q Consensus 141 ~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eL 181 (872)
.||.++..++..+..+.++..++..+++.++..+..++.++
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333
No 458
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=20.61 E-value=8.8e+02 Score=24.45 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002878 593 ERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNL 636 (872)
Q Consensus 593 e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~~~~k~~~~ 636 (872)
+......+...+.++...+...+..++..+.....++...+..+
T Consensus 111 ~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~l 154 (181)
T PRK13454 111 QAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDT 154 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555555544444444444333333
No 459
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.55 E-value=9.2e+02 Score=24.61 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH
Q 002878 311 FYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAG 390 (872)
Q Consensus 311 ~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le 390 (872)
+.++-..|...++....-|......+.+..-........+...+..|..++..|..++..+......+.....+...
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--- 162 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--- 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002878 391 EKISRLESEAEALISKKIETELLVSKL 417 (872)
Q Consensus 391 ~~i~~Le~e~e~L~~~~e~le~~i~eL 417 (872)
........+++.|......+...+..+
T Consensus 163 ~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 163 EEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
No 460
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.50 E-value=9.5e+02 Score=24.80 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 595 KCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQ 627 (872)
Q Consensus 595 r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~ 627 (872)
.|+..|.+.+.+....+...+.+.+.+...+..
T Consensus 104 e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~ 136 (205)
T PRK06231 104 NAKQRHENALAQAKEIIDQANYEALQLKSELEK 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544444333
No 461
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.19 E-value=5.1e+02 Score=21.48 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002878 420 EIDSLLENLRSFENKLQDQLLKI 442 (872)
Q Consensus 420 ei~~l~~ei~e~E~~~e~Le~~l 442 (872)
++..+..++..++..+..+...+
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
Done!