Query 002878
Match_columns 872
No_of_seqs 455 out of 1719
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.0 1.2E-05 4.1E-10 84.4 43.4 125 43-167 3-127 (284)
2 1c1g_A Tropomyosin; contractIl 99.0 2.3E-05 8E-10 82.2 44.0 94 50-143 3-96 (284)
3 3tnu_B Keratin, type II cytosk 98.7 1.4E-07 4.9E-12 88.8 12.8 98 526-628 2-101 (129)
4 1i84_S Smooth muscle myosin he 98.7 8.6E-07 3E-11 113.0 23.3 18 4-21 718-735 (1184)
5 3tnu_A Keratin, type I cytoske 98.6 1.9E-07 6.5E-12 88.2 11.4 99 525-628 3-103 (131)
6 3trt_A Vimentin; cytoskeleton, 98.6 2.6E-07 9E-12 78.9 10.8 72 509-581 4-76 (77)
7 1i84_S Smooth muscle myosin he 98.6 1.1E-07 3.9E-12 121.1 11.1 49 134-182 910-958 (1184)
8 3na7_A HP0958; flagellar bioge 97.4 0.066 2.3E-06 56.1 26.3 135 41-175 13-149 (256)
9 2v71_A Nuclear distribution pr 97.2 0.058 2E-06 53.1 21.1 14 511-524 127-140 (189)
10 2v71_A Nuclear distribution pr 97.0 0.089 3E-06 51.8 21.0 17 477-493 159-175 (189)
11 3na7_A HP0958; flagellar bioge 96.9 0.094 3.2E-06 54.9 22.1 63 47-109 12-74 (256)
12 3swk_A Vimentin; cytoskeleton, 96.9 0.0029 9.9E-08 54.7 8.6 58 438-495 19-86 (86)
13 3ol1_A Vimentin; structural ge 96.9 0.012 4.1E-07 54.1 13.2 83 390-497 19-108 (119)
14 3vkg_A Dynein heavy chain, cyt 96.3 0.96 3.3E-05 62.3 30.1 51 240-290 2057-2107(3245)
15 3vkg_A Dynein heavy chain, cyt 95.9 3.5 0.00012 57.0 32.4 204 69-305 1898-2101(3245)
16 3s4r_A Vimentin; alpha-helix, 95.5 0.21 7.3E-06 43.6 12.7 79 338-422 9-87 (93)
17 2dfs_A Myosin-5A; myosin-V, in 95.3 0.42 1.4E-05 59.9 19.3 122 353-478 922-1043(1080)
18 3s4r_A Vimentin; alpha-helix, 95.1 0.21 7.3E-06 43.6 11.4 32 264-295 13-44 (93)
19 2ocy_A RAB guanine nucleotide 94.8 2.9 9.8E-05 39.7 20.8 72 104-175 46-118 (154)
20 2ocy_A RAB guanine nucleotide 94.6 3.2 0.00011 39.4 20.2 45 147-191 54-98 (154)
21 3o0z_A RHO-associated protein 94.5 3.5 0.00012 39.6 22.6 20 466-485 119-138 (168)
22 3ghg_A Fibrinogen alpha chain; 94.1 0.24 8.3E-06 55.3 11.3 74 509-584 59-133 (562)
23 2fxo_A Myosin heavy chain, car 94.0 3.8 0.00013 37.9 18.6 13 177-189 109-121 (129)
24 2eqb_B RAB guanine nucleotide 94.0 1.2 4.2E-05 38.7 13.1 85 98-182 8-93 (97)
25 3s84_A Apolipoprotein A-IV; fo 93.9 7.4 0.00025 40.8 28.7 28 653-680 212-239 (273)
26 2v66_B Nuclear distribution pr 93.8 3.1 0.00011 37.3 15.7 80 222-304 7-86 (111)
27 3ol1_A Vimentin; structural ge 93.3 1.7 5.7E-05 39.7 13.7 67 158-224 48-114 (119)
28 3ghg_A Fibrinogen alpha chain; 93.0 1.7 5.6E-05 48.7 15.4 93 355-448 60-153 (562)
29 1gk4_A Vimentin; intermediate 93.0 0.87 3E-05 38.9 10.6 49 576-628 2-52 (84)
30 3o0z_A RHO-associated protein 92.7 7.3 0.00025 37.4 22.5 17 208-224 144-160 (168)
31 2dfs_A Myosin-5A; myosin-V, in 92.4 2.2 7.7E-05 53.4 17.7 66 213-281 986-1051(1080)
32 1x8y_A Lamin A/C; structural p 92.2 0.98 3.3E-05 38.8 9.9 50 575-628 3-54 (86)
33 3u1c_A Tropomyosin alpha-1 cha 92.1 5.7 0.0002 35.0 15.2 18 42-59 5-22 (101)
34 2efr_A General control protein 90.7 12 0.0004 35.6 23.4 16 158-173 98-113 (155)
35 3swk_A Vimentin; cytoskeleton, 90.5 3.1 0.00011 35.6 11.3 76 345-424 7-82 (86)
36 3u1c_A Tropomyosin alpha-1 cha 90.5 8.7 0.0003 33.8 15.5 10 158-167 86-95 (101)
37 4gkw_A Spindle assembly abnorm 89.8 11 0.00038 34.1 21.4 63 232-294 98-160 (167)
38 3oja_B Anopheles plasmodium-re 89.7 2.2 7.5E-05 49.8 13.3 77 115-191 501-577 (597)
39 3s84_A Apolipoprotein A-IV; fo 88.5 26 0.0009 36.5 26.7 17 661-677 209-225 (273)
40 2v66_B Nuclear distribution pr 88.1 14 0.00048 33.0 16.2 43 561-603 49-93 (111)
41 3u59_A Tropomyosin beta chain; 87.4 14 0.00049 32.4 14.8 12 156-167 84-95 (101)
42 3tnu_A Keratin, type I cytoske 87.1 7.6 0.00026 35.9 12.5 10 393-402 47-56 (131)
43 2jee_A YIIU; FTSZ, septum, coi 86.9 12 0.0004 31.5 11.9 72 39-110 6-77 (81)
44 3hnw_A Uncharacterized protein 86.7 7.5 0.00026 36.3 12.1 20 384-403 68-87 (138)
45 1ic2_A Tropomyosin alpha chain 86.6 9.3 0.00032 32.1 11.6 71 231-301 5-75 (81)
46 2e7s_A RAB guanine nucleotide 86.3 3.8 0.00013 37.9 9.6 42 149-190 44-85 (135)
47 2v4h_A NF-kappa-B essential mo 86.2 13 0.00045 32.9 12.4 57 31-87 16-75 (110)
48 2eqb_B RAB guanine nucleotide 84.6 19 0.00066 31.2 14.2 65 92-162 30-94 (97)
49 1ic2_A Tropomyosin alpha chain 82.4 13 0.00046 31.2 10.8 51 107-157 4-54 (81)
50 2b9c_A Striated-muscle alpha t 81.6 22 0.00076 33.5 13.0 38 216-253 57-94 (147)
51 2e7s_A RAB guanine nucleotide 80.4 3.1 0.0001 38.5 6.4 69 104-172 34-103 (135)
52 2b9c_A Striated-muscle alpha t 80.2 39 0.0014 31.7 14.9 58 119-176 34-91 (147)
53 3q8t_A Beclin-1; autophagy, AT 79.0 32 0.0011 29.9 14.0 34 151-184 60-93 (96)
54 1deq_A Fibrinogen (alpha chain 78.3 58 0.002 35.1 16.2 22 467-488 136-157 (390)
55 2w83_C C-JUN-amino-terminal ki 77.8 18 0.00063 29.7 9.4 64 352-419 9-72 (77)
56 3hnw_A Uncharacterized protein 76.0 26 0.0009 32.6 11.6 108 40-148 26-135 (138)
57 1gk4_A Vimentin; intermediate 74.7 38 0.0013 28.6 11.5 48 515-563 2-49 (84)
58 1deq_A Fibrinogen (alpha chain 74.2 52 0.0018 35.5 14.5 42 408-449 116-157 (390)
59 3mov_A Lamin-B1; LMNB1, B-type 72.6 13 0.00046 32.3 8.0 49 576-628 13-63 (95)
60 2jee_A YIIU; FTSZ, septum, coi 72.3 42 0.0015 28.1 11.1 32 79-110 11-42 (81)
61 1x79_B RAB GTPase binding effe 71.3 57 0.0019 29.1 13.3 77 113-192 3-79 (112)
62 2v4h_A NF-kappa-B essential mo 69.5 60 0.0021 28.7 13.2 31 465-495 76-106 (110)
63 1m1j_A Fibrinogen alpha subuni 68.8 1.5E+02 0.005 32.9 16.8 22 355-376 61-82 (491)
64 2zqm_A Prefoldin beta subunit 68.5 56 0.0019 28.9 11.8 33 341-373 16-48 (117)
65 2zqm_A Prefoldin beta subunit 66.9 39 0.0013 29.9 10.4 38 460-497 8-45 (117)
66 1x8y_A Lamin A/C; structural p 64.5 51 0.0017 27.9 9.9 41 516-556 5-45 (86)
67 1m1j_A Fibrinogen alpha subuni 63.3 1.3E+02 0.0045 33.2 15.0 40 410-449 116-155 (491)
68 3a7p_A Autophagy protein 16; c 63.3 86 0.0029 29.4 11.8 59 124-182 69-127 (152)
69 1fxk_A Prefoldin; archaeal pro 62.9 52 0.0018 28.6 10.2 31 343-373 13-43 (107)
70 3mq9_A Bone marrow stromal ant 62.1 1.1E+02 0.0037 34.1 15.4 21 275-295 444-464 (471)
71 3qh9_A Liprin-beta-2; coiled-c 61.9 50 0.0017 27.5 8.8 50 85-134 23-72 (81)
72 2xdj_A Uncharacterized protein 61.6 64 0.0022 27.2 9.8 46 269-314 22-67 (83)
73 3jsv_C NF-kappa-B essential mo 61.3 76 0.0026 27.3 10.1 48 40-87 3-53 (94)
74 3q8t_A Beclin-1; autophagy, AT 60.7 83 0.0028 27.2 14.9 24 471-494 66-89 (96)
75 1l8d_A DNA double-strand break 60.5 88 0.003 27.5 13.1 21 464-484 77-97 (112)
76 3i00_A HIP-I, huntingtin-inter 60.4 42 0.0014 30.4 9.0 36 206-241 10-45 (120)
77 3a7p_A Autophagy protein 16; c 60.1 1.1E+02 0.0039 28.6 12.6 60 396-455 73-132 (152)
78 1gk7_A Vimentin; intermediate 59.6 10 0.00034 27.4 3.8 33 337-369 5-37 (39)
79 1m1j_B Fibrinogen beta chain; 57.6 2.4E+02 0.0082 31.5 16.5 12 58-69 98-109 (464)
80 3mq7_A Bone marrow stromal ant 56.6 1.1E+02 0.0037 27.3 13.1 22 466-487 79-100 (121)
81 4gkw_A Spindle assembly abnorm 56.2 1.2E+02 0.004 27.5 23.0 30 162-191 102-131 (167)
82 1x79_B RAB GTPase binding effe 55.4 1.1E+02 0.0039 27.2 13.9 18 477-494 89-106 (112)
83 1m1j_B Fibrinogen beta chain; 54.9 2.6E+02 0.009 31.2 17.4 18 355-372 96-113 (464)
84 3mov_A Lamin-B1; LMNB1, B-type 52.2 45 0.0015 28.9 7.5 41 516-556 14-54 (95)
85 3iox_A AGI/II, PA; alpha helix 47.8 3.1E+02 0.011 30.6 15.1 15 535-549 5-19 (497)
86 3hhm_B NISH2 P85alpha; PI3KCA, 47.0 3.1E+02 0.011 29.7 17.5 49 119-167 201-249 (373)
87 1jcd_A Major outer membrane li 46.9 91 0.0031 23.8 7.5 47 38-84 3-49 (52)
88 3efg_A Protein SLYX homolog; x 45.9 30 0.001 28.9 5.2 48 127-174 11-58 (78)
89 3trt_A Vimentin; cytoskeleton, 44.6 1.3E+02 0.0044 24.6 10.3 22 208-229 10-31 (77)
90 1gk7_A Vimentin; intermediate 44.4 40 0.0014 24.2 4.9 27 265-291 11-37 (39)
91 2w83_C C-JUN-amino-terminal ki 43.7 1.4E+02 0.0047 24.6 9.3 15 411-425 36-50 (77)
92 3uux_B Mitochondrial division 43.1 1.9E+02 0.0064 29.2 11.3 64 42-105 159-222 (242)
93 4h22_A Leucine-rich repeat fli 42.5 1.7E+02 0.0059 25.5 11.6 76 115-190 8-83 (103)
94 3jsv_C NF-kappa-B essential mo 40.8 1.7E+02 0.006 25.1 11.0 33 464-496 53-85 (94)
95 2xzr_A Immunoglobulin-binding 40.7 1.7E+02 0.0059 25.0 16.1 86 53-152 6-91 (114)
96 3nmd_A CGMP dependent protein 40.6 1.1E+02 0.0039 24.9 7.6 42 456-497 24-65 (72)
97 1go4_E MAD1 (mitotic arrest de 39.6 64 0.0022 28.2 6.4 20 606-625 72-91 (100)
98 1fxk_A Prefoldin; archaeal pro 36.3 2.1E+02 0.0071 24.6 12.1 28 131-158 73-100 (107)
99 2xdj_A Uncharacterized protein 36.1 1.9E+02 0.0066 24.2 10.3 26 410-435 25-50 (83)
100 3htk_A Structural maintenance 34.8 1.3E+02 0.0043 23.3 7.1 31 104-134 21-51 (60)
101 2no2_A HIP-I, huntingtin-inter 34.3 2.4E+02 0.0083 24.8 14.5 32 119-150 11-42 (107)
102 1a93_B MAX protein, coiled coi 33.8 45 0.0015 23.1 3.5 25 566-590 5-31 (34)
103 3efg_A Protein SLYX homolog; x 33.3 65 0.0022 26.8 5.3 24 104-127 16-39 (78)
104 2i1j_A Moesin; FERM, coiled-co 32.2 66 0.0023 37.3 7.1 77 30-109 294-370 (575)
105 3cl3_D NF-kappa-B essential mo 31.5 80 0.0027 28.6 5.8 16 203-218 86-101 (130)
106 1f5n_A Interferon-induced guan 31.0 6.6E+02 0.023 28.9 24.0 25 599-623 516-540 (592)
107 2yy0_A C-MYC-binding protein; 29.2 90 0.0031 23.9 5.0 31 465-495 19-49 (53)
108 4dzn_A Coiled-coil peptide CC- 28.9 1.2E+02 0.004 19.9 4.6 28 39-66 2-29 (33)
109 2xzr_A Immunoglobulin-binding 27.7 2.9E+02 0.0099 23.6 16.1 9 177-185 95-103 (114)
110 4e61_A Protein BIM1; EB1-like 26.4 3E+02 0.01 24.2 8.5 46 278-323 15-60 (106)
111 2i1j_A Moesin; FERM, coiled-co 26.1 73 0.0025 36.9 6.0 65 43-107 332-396 (575)
112 3uux_B Mitochondrial division 25.7 4.8E+02 0.016 26.3 10.9 61 42-102 152-212 (242)
113 3qh9_A Liprin-beta-2; coiled-c 24.9 3E+02 0.01 22.9 9.1 53 71-123 23-75 (81)
114 2l7b_A Apolipoprotein E, APO-E 24.6 4.3E+02 0.015 27.7 11.2 29 662-694 247-275 (307)
115 2jo8_A Serine/threonine-protei 24.6 1.4E+02 0.0049 22.7 5.2 29 654-682 14-42 (51)
116 3teq_A Stromal interaction mol 23.7 3.5E+02 0.012 23.6 8.3 74 227-300 16-90 (101)
117 2oto_A M protein; helical coil 23.3 4.5E+02 0.015 24.4 19.5 46 52-97 28-73 (155)
118 2lw1_A ABC transporter ATP-bin 23.3 3.3E+02 0.011 22.8 10.7 79 26-109 6-84 (89)
119 1ci6_A Transcription factor AT 23.1 2.8E+02 0.0094 21.8 8.3 36 460-495 25-60 (63)
120 3iv1_A Tumor susceptibility ge 22.4 3.3E+02 0.011 22.5 10.0 31 392-422 26-56 (78)
121 3ter_A Mammalian stromal inter 22.1 4.6E+02 0.016 24.0 10.3 74 227-300 47-123 (136)
122 2xu6_A MDV1 coiled coil; prote 21.1 3.4E+02 0.012 22.1 9.0 56 44-99 5-60 (72)
123 3vem_A Helicase protein MOM1; 20.4 4.6E+02 0.016 23.3 10.8 32 447-478 68-99 (115)
124 4h22_A Leucine-rich repeat fli 20.3 4.3E+02 0.015 23.0 10.7 24 462-485 55-78 (103)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.01 E-value=1.2e-05 Score=84.45 Aligned_cols=125 Identities=10% Similarity=0.151 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHH
Q 002878 43 NLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLT 122 (872)
Q Consensus 43 ~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~ 122 (872)
.++..+..+...++.+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAE 82 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666665555555555555555555555555555544444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 123 ETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 123 ~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
..+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (284)
T 1c1g_A 83 ADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.98 E-value=2.3e-05 Score=82.19 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHH
Q 002878 50 KLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLA 129 (872)
Q Consensus 50 ~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~ 129 (872)
.+...+..++.++..+...+..+...+..+...+..+......+...+..+...+..+...+..+...+..+...+..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAE 82 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444444444444444444444444444444444444444444443333
Q ss_pred HHHHHHHHhHHHHH
Q 002878 130 SQVQDAEKNKEFFE 143 (872)
Q Consensus 130 ~~i~~~E~~~~~lE 143 (872)
..+..+...+..+.
T Consensus 83 ~~~~~~~~~~~~~~ 96 (284)
T 1c1g_A 83 ADVASLNRRIQLFE 96 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 3
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=98.69 E-value=1.4e-07 Score=88.82 Aligned_cols=98 Identities=20% Similarity=0.308 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHHHHH
Q 002878 526 AESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERKCDQKLAEC 603 (872)
Q Consensus 526 ~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r~~~~L~~~ 603 (872)
+.+++.+++.||+.++++++..+.++.+++. .++.++.++++.++.|+++|+++.+.+ |+..|.+++.+|...+.+.
T Consensus 2 a~knr~eaE~~y~~K~eel~~~~~~~~~~l~-~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~ 80 (129)
T 3tnu_B 2 ANRSRTEAESWYQTKYEELQQTAGRHGDDLR-NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA 80 (129)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999 999999999999999999999999999 9999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 604 KEEAKQQLKRIQEEHAAIVISIQQE 628 (872)
Q Consensus 604 k~e~e~~l~~~~eE~e~~~~~~~~~ 628 (872)
+.. |.+++.++..++..++..
T Consensus 81 q~~----i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 81 RNK----LAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHhHHHHHHHHHHH
Confidence 654 366666666655555443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.66 E-value=8.6e-07 Score=113.00 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=14.1
Q ss_pred cCCccccchhhhhhhccc
Q 002878 4 LGFPSVKSLDQFKSLSRS 21 (872)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (872)
.|||.--+++.|..-++.
T Consensus 718 ~Gfp~R~~~~~F~~ry~~ 735 (1184)
T 1i84_S 718 QGFPNRIVFQEFRQRYEI 735 (1184)
T ss_dssp HSCCEEEEHHHHHHHTTT
T ss_pred hcCcccccHHHHHHHHHH
Confidence 599999999888765554
No 5
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=98.62 E-value=1.9e-07 Score=88.17 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHHHH
Q 002878 525 AAESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERKCDQKLAE 602 (872)
Q Consensus 525 ~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r~~~~L~~ 602 (872)
.+.+++.+++.||+.++++++..+.++.+++. .++.++.++++.++.|+++|+++.+.+ |+..|.+++.+|...+.+
T Consensus 3 ia~knr~eaE~~y~~K~eel~~~~~~~~~~l~-~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~ 81 (131)
T 3tnu_A 3 TAEKNRKDAEEWFFTKTEELNREVATNSELVQ-SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ 81 (131)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999 999999999999999999999999999 999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 603 CKEEAKQQLKRIQEEHAAIVISIQQE 628 (872)
Q Consensus 603 ~k~e~e~~l~~~~eE~e~~~~~~~~~ 628 (872)
.+.. |.+++.++..++..++..
T Consensus 82 ~q~~----i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 82 IQEM----IGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHH
Confidence 7654 366666666665555443
No 6
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=98.60 E-value=2.6e-07 Score=78.89 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=68.8
Q ss_pred cccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 509 EKKLEDQITENQAQLT-AAESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNME 581 (872)
Q Consensus 509 ~~~le~~L~elr~q~e-~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~ 581 (872)
..+|...|.+++++|+ .+.+++.+++.||..++++++..+.++.+++. .++.++.++++.++.|+++|+++.
T Consensus 4 ~~DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~-~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 4 KPDCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALR-QAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4589999999999999 99999999999999999999999999999999 999999999999999999999875
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.57 E-value=1.1e-07 Score=121.06 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002878 134 DAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELE 182 (872)
Q Consensus 134 ~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe 182 (872)
+++..+..+...+..+...+.++..++.++...+..+...+.....++.
T Consensus 910 ~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~ 958 (1184)
T 1i84_S 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444433333333333333333333333
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.38 E-value=0.066 Score=56.07 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhh--hhh
Q 002878 41 FANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTK--TLS 118 (872)
Q Consensus 41 l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k--~~~ 118 (872)
++.+...+..+...+..+..++..+...+..+...+..+...+..+...+.++...+.....++.....++.+.+ .++
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~ 92 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSEREL 92 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 444555555555555555555556666666666666666666666666666666666666666666666555543 346
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002878 119 DQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIIT 175 (872)
Q Consensus 119 ~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~ 175 (872)
..|...+..+...+..++..+..+...++.....+..+...+..+...+..+...+.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777666666666666666666666666665555555555555544444433
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.16 E-value=0.058 Score=53.15 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=8.0
Q ss_pred cHHHHHHHHHHHHH
Q 002878 511 KLEDQITENQAQLT 524 (872)
Q Consensus 511 ~le~~L~elr~q~e 524 (872)
.....+.++...|+
T Consensus 127 ~~~~SleD~e~kln 140 (189)
T 2v71_A 127 ATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHH
Confidence 34455566666666
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.03 E-value=0.089 Score=51.83 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=1.9
Q ss_pred HHHhHHhHHHHHHHHHH
Q 002878 477 KEMLVDSIEKQFCQLQN 493 (872)
Q Consensus 477 Le~kiesLe~El~~Lk~ 493 (872)
|...++.|..++..|+.
T Consensus 159 l~~~~QRLkdE~rDLk~ 175 (189)
T 2v71_A 159 LLVSVQRLKDEARDLRQ 175 (189)
T ss_dssp HHCCC------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.95 E-value=0.094 Score=54.91 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 002878 47 TAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLES 109 (872)
Q Consensus 47 ~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~ 109 (872)
.+..++..++.+...+..+-..+..+...+.-+..++..+...+..+...+..+...+..+..
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544455444444444444444444444444444433333333333
No 12
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=96.94 E-value=0.0029 Score=54.67 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=39.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------HHHHhHHhHHHHHHHHHHHH
Q 002878 438 QLLKISSLEMENKENMEKFHAEM---QKKEEEINNLKQEHE-------KKEMLVDSIEKQFCQLQNIL 495 (872)
Q Consensus 438 Le~~l~~Le~~~~~~~~~lq~el---~~~eeele~lrk~l~-------~Le~kiesLe~El~~Lk~~l 495 (872)
+..++..+.......+.+++.++ ..++.+|..+|+.++ +|+.++++|..||.||++.|
T Consensus 19 l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~h 86 (86)
T 3swk_A 19 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33333333444444444555444 456778888888887 89999999999999998754
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.93 E-value=0.012 Score=54.13 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 390 GEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINN 469 (872)
Q Consensus 390 e~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~ 469 (872)
+..|..|..+++.+......+...+..+...+..+...++..-+ ....++.+|..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~-------------------------~r~~~E~di~~ 73 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML-------------------------QREEAENTLQS 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------------------HHHHHHHHHHH
Confidence 35555666666655555555555444444444444333222111 12334556666
Q ss_pred HHHHHH-------HHHHhHHhHHHHHHHHHHHHhH
Q 002878 470 LKQEHE-------KKEMLVDSIEKQFCQLQNILGE 497 (872)
Q Consensus 470 lrk~l~-------~Le~kiesLe~El~~Lk~~lee 497 (872)
+|+.++ +|+.++++|..||.|++..+++
T Consensus 74 lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 74 FRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666 7999999999999999999875
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.29 E-value=0.96 Score=62.31 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=26.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 002878 240 DLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFV 290 (872)
Q Consensus 240 ~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l 290 (872)
+-..++.+++....++...++=+..|-.|...|...+..+...+..+.+++
T Consensus 2057 ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2057 ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 333334444444444444444444455555556666666666666666654
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.88 E-value=3.5 Score=57.04 Aligned_cols=204 Identities=15% Similarity=0.146 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002878 69 LKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISS 148 (872)
Q Consensus 69 iek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e 148 (872)
++-+..=..++.++...+.....++..=+ .|+.++...+++|+..+......+....++... .+..
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL-----------~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~---~l~~ 1963 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGL-----------KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQ---KLKQ 1963 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 45555556667777776666655555444 344445555555665555554444444442222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002878 149 SMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETE 228 (872)
Q Consensus 149 ~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~el~ 228 (872)
+...-.+++.+ ....+..+..+.....++...+...+.......-. .=+..++..+..++.
T Consensus 1964 i~~~~~~ae~~----k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa---------------~Pkr~~l~~ae~~l~ 2024 (3245)
T 3vkg_A 1964 MVQDQQAAEIK----QKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT---------------GPLREEVEQLENAAN 2024 (3245)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------ChHHHHHHHHHHHHH
Confidence 22221221111 11112223334444445555555555443221111 123345555666666
Q ss_pred HHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhH
Q 002878 229 SLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSL 305 (872)
Q Consensus 229 ~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~ 305 (872)
....++...+..|..+++.+..++.....+.+++..|+.+.+....++...++-+..|-+.-..+...+..++.+..
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 67777777777888888888888888888888888888888888888888888888888888888877777765553
No 16
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=95.55 E-value=0.21 Score=43.58 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002878 338 NQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKL 417 (872)
Q Consensus 338 ~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eL 417 (872)
..+..||++|++++..+..|+.++..|+.+|..+...... .....++..|..|..+++.+......+...+..+
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~------~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS------RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999888754321 1223334555555555555555555554444444
Q ss_pred HHHHH
Q 002878 418 EKEID 422 (872)
Q Consensus 418 e~ei~ 422 (872)
...+.
T Consensus 83 ~~~~~ 87 (93)
T 3s4r_A 83 AEDIM 87 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.30 E-value=0.42 Score=59.92 Aligned_cols=122 Identities=17% Similarity=0.115 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 353 EKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFE 432 (872)
Q Consensus 353 e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E 432 (872)
.+..|+..+.+|..++......+..+...+......+..++..|+.+++++.. .+.....++..+..+..++.+++
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~----~~~e~~~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM----SEEEAKNATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555444444322221112222333333333333222 12222233334444444444444
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 433 NKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKE 478 (872)
Q Consensus 433 ~~~e~Le~~l~~Le~~~~~~~~~lq~el~~~eeele~lrk~l~~Le 478 (872)
.+++.+..+...++....++.++++..+..++.+...++..+++++
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333333333333333333333333333333
No 18
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=95.14 E-value=0.21 Score=43.58 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=25.8
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 264 DLQMSRDSFEKKLVTSIREIKNLEGFVHVFAA 295 (872)
Q Consensus 264 ~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~ 295 (872)
.|.+....|+++|+.|+.++..|+..+..+..
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555678999999999999999988766553
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.80 E-value=2.9 Score=39.72 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=45.7
Q ss_pred HHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHH
Q 002878 104 WKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVD-CQKQQMDHLSLKLGSAEEIIT 175 (872)
Q Consensus 104 ~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~-el~rql~dl~akLee~e~~l~ 175 (872)
+..+...++....++..|...+..-......++..+..++.+++++...+. ++|..+++.+..-..++....
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~ 118 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNK 118 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777777777777777777777777777777777766654 366666655544444444433
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.59 E-value=3.2 Score=39.38 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 147 SSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREER 191 (872)
Q Consensus 147 ~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~ 191 (872)
.....++..+...+.+-......++....+...+|++|...+=++
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeE 98 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 98 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555556666666666666665554433
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.54 E-value=3.5 Score=39.58 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhHHhHH
Q 002878 466 EINNLKQEHEKKEMLVDSIE 485 (872)
Q Consensus 466 ele~lrk~l~~Le~kiesLe 485 (872)
+...+...+..+++...+++
T Consensus 119 e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33334444444555555555
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.13 E-value=0.24 Score=55.25 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 002878 509 EKKLEDQITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEIN-DIRRKYEVEKLEIVNMEKEK 584 (872)
Q Consensus 509 ~~~le~~L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei~-elrr~i~~L~~Ei~~L~~~~ 584 (872)
.+++...|++|+.+|+.+.++..++..+|..+++.|+..+.... +.. ....++. ++++++..|+.+|+.....+
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNd-NtynE~S~ELRRrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRD-NTYNRVSEDLRSRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999998899999999999999999887777554 444 4447777 88899988888877665333
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.00 E-value=3.8 Score=37.88 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 002878 177 REKELEDLKIERE 189 (872)
Q Consensus 177 ~~~eLe~Lk~~le 189 (872)
+..++..++..++
T Consensus 109 le~e~~~Lk~~le 121 (129)
T 2fxo_A 109 LEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.96 E-value=1.2 Score=38.72 Aligned_cols=85 Identities=9% Similarity=0.101 Sum_probs=55.9
Q ss_pred HhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHH
Q 002878 98 KEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVD-CQKQQMDHLSLKLGSAEEIITK 176 (872)
Q Consensus 98 ~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~-el~rql~dl~akLee~e~~l~~ 176 (872)
..+..++..+++.++....++..|...+..-......++..+..++.+++++...|. ++|..+++.+.....++....+
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~ 87 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKR 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777777777777777777777777777777788877777776654 4677766666555555555554
Q ss_pred HHHHHH
Q 002878 177 REKELE 182 (872)
Q Consensus 177 ~~~eLe 182 (872)
+..+|.
T Consensus 88 L~~qL~ 93 (97)
T 2eqb_B 88 LTEQLR 93 (97)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 25
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=93.86 E-value=7.4 Score=40.75 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhHH
Q 002878 653 NELREKTTKLKSEHEVQMKALQCQHEDE 680 (872)
Q Consensus 653 ~~~~~~~~~~~~~~e~qik~lq~~~ee~ 680 (872)
..++..++.++..+.-.+.+++.++...
T Consensus 212 ~~~~qq~e~f~~~~~p~~e~~~~~l~~~ 239 (273)
T 3s84_A 212 GHLDQQVEEFRRRVEPYGENFNKALVQQ 239 (273)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 3444444445555444455544444433
No 26
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.77 E-value=3.1 Score=37.27 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002878 222 DNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLD 301 (872)
Q Consensus 222 e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eld 301 (872)
+++.....+..++..|...+.. ...........|++++..|+...+.|...|+.++..+++|+..-..+.+.+.+++
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 4555666667777777666632 2333456677888899999999999999999999999999987777777777666
Q ss_pred Hhh
Q 002878 302 KQS 304 (872)
Q Consensus 302 kk~ 304 (872)
.++
T Consensus 84 ~k~ 86 (111)
T 2v66_B 84 QRL 86 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.26 E-value=1.7 Score=39.75 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 002878 158 QQMDHLSLKLGSAEEIITKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNR 224 (872)
Q Consensus 158 rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k 224 (872)
..+.++..+++.--..-.....++..+++.+.+.+-.+.++...+.++..++..+...+++++.+.+
T Consensus 48 ~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 48 EDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455443333444666777777777777766666666666666666666666666665433
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.01 E-value=1.7 Score=48.71 Aligned_cols=93 Identities=10% Similarity=0.214 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 355 DALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKI-ETELLVSKLEKEIDSLLENLRSFEN 433 (872)
Q Consensus 355 ~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e-~le~~i~eLe~ei~~l~~ei~e~E~ 433 (872)
..+...|++|+.+++++.+....+..-....+..+..++.... +.+....++. +|+..|..|+.+|......|..|++
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666654443333211112222222222222 2223333333 6666666666666666566666666
Q ss_pred HHHHHHHHHHhHhHH
Q 002878 434 KLQDQLLKISSLEME 448 (872)
Q Consensus 434 ~~e~Le~~l~~Le~~ 448 (872)
.++.+..+|.+||.+
T Consensus 139 nLedq~~kIQRLEvD 153 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666555
No 29
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=92.95 E-value=0.87 Score=38.92 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=35.9
Q ss_pred HHHHHHhhh--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 576 EIVNMEKEK--ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQE 628 (872)
Q Consensus 576 Ei~~L~~~~--le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~ 628 (872)
+|+++.+.+ |+..+.+++.+|...+.+.+..+ ..++.++..++..++..
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i----~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTI----GRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 677888888 99999999999999887776443 55666655555544443
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.72 E-value=7.3 Score=37.39 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002878 208 KNDAMIKKLEVTVADNR 224 (872)
Q Consensus 208 e~~~l~e~~Eee~~e~k 224 (872)
++..+...++.++.+.+
T Consensus 144 eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 144 KLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444544433
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.39 E-value=2.2 Score=53.42 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 002878 213 IKKLEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIR 281 (872)
Q Consensus 213 ~e~~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~ 281 (872)
+..++++++..+.++..+.++...++....... +.++.....|++++..|+...+++...+...++
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444443333 345577777788888887777777766666554
No 32
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=92.17 E-value=0.98 Score=38.78 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=30.2
Q ss_pred HHHHHHHhhh--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 575 LEIVNMEKEK--ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQE 628 (872)
Q Consensus 575 ~Ei~~L~~~~--le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~ 628 (872)
++|+++.+++ |+..+.+++.+|...+.+.+..+ .+++.++..++..++..
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i----~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLL----AEKEREMAEMRARMQQQ 54 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5677888888 99999999999999888876544 66666666655544443
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.13 E-value=5.7 Score=35.01 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002878 42 ANLKLTAEKLVKEQASVK 59 (872)
Q Consensus 42 ~~lk~~l~~l~~e~e~lq 59 (872)
..++..+..+..+.+.+.
T Consensus 5 daIKkKm~~lk~e~e~a~ 22 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENAL 22 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334433333333333
No 34
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.66 E-value=12 Score=35.63 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhHHHH
Q 002878 158 QQMDHLSLKLGSAEEI 173 (872)
Q Consensus 158 rql~dl~akLee~e~~ 173 (872)
+.+.-+...++.++..
T Consensus 98 Rsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 35
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.49 E-value=3.1 Score=35.61 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=46.1
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002878 345 DKFFSIASEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSL 424 (872)
Q Consensus 345 ~~~~~l~~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l 424 (872)
.++..+..++..+..++..+...++.+......-. .....++..+..|...++++.-.+.+++..+..|..+|..+
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~----~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM----LQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666665555443332 23445667777777777777777777777776666666544
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.47 E-value=8.7 Score=33.83 Aligned_cols=10 Identities=10% Similarity=0.375 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002878 158 QQMDHLSLKL 167 (872)
Q Consensus 158 rql~dl~akL 167 (872)
..+..+++++
T Consensus 86 ~ev~~L~Rri 95 (101)
T 3u1c_A 86 SEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 37
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=89.80 E-value=11 Score=34.06 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 232 SKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFA 294 (872)
Q Consensus 232 ~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~ 294 (872)
+++.+++++|+.+..=++.+...+.-|-|+..+=..-..+..+-++.+..++..+...|..+.
T Consensus 98 RKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 345556666766666666666666666655544222223344444555556666655555444
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.68 E-value=2.2 Score=49.82 Aligned_cols=77 Identities=12% Similarity=0.074 Sum_probs=40.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 115 KTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREER 191 (872)
Q Consensus 115 k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~ 191 (872)
.....++...+..+....+..+.....++....+....+..+..++..+..+++.....+....+++..++.++...
T Consensus 501 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 501 ARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555555555555555555555555555555555555555555555555555555544443
No 39
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=88.47 E-value=26 Score=36.54 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=7.1
Q ss_pred HhhhHHHHHHHHHHHHh
Q 002878 661 KLKSEHEVQMKALQCQH 677 (872)
Q Consensus 661 ~~~~~~e~qik~lq~~~ 677 (872)
-+...+.+|+.+++.++
T Consensus 209 ~~~~~~~qq~e~f~~~~ 225 (273)
T 3s84_A 209 ELGGHLDQQVEEFRRRV 225 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333444444444443
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.10 E-value=14 Score=33.01 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHHHHH
Q 002878 561 QEINDIRRKYEVEKLEIVNMEKEK--ADKTIGEMERKCDQKLAEC 603 (872)
Q Consensus 561 ~ei~elrr~i~~L~~Ei~~L~~~~--le~~l~e~e~r~~~~L~~~ 603 (872)
..-..+...+..|+...+++.... ....+.+++.+|+..+...
T Consensus 49 ~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErn 93 (111)
T 2v66_B 49 AIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333344444444554445554444 6668888888888877654
No 41
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.42 E-value=14 Score=32.37 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 002878 156 QKQQMDHLSLKL 167 (872)
Q Consensus 156 l~rql~dl~akL 167 (872)
+...++.|++++
T Consensus 84 AE~evasLnRri 95 (101)
T 3u59_A 84 AEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.12 E-value=7.6 Score=35.89 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002878 393 ISRLESEAEA 402 (872)
Q Consensus 393 i~~Le~e~e~ 402 (872)
+..|+.+++.
T Consensus 47 iq~L~~el~~ 56 (131)
T 3tnu_A 47 MQNLEIELQS 56 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.86 E-value=12 Score=31.46 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q 002878 39 GSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESK 110 (872)
Q Consensus 39 ~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k 110 (872)
.-|..+...+....+.+..++.++.+++.+-..+..+...+......+...+.+|..+......++..|-.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666666666666666666666666666666666666666666666666555555554444
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.65 E-value=7.5 Score=36.33 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002878 384 EECRLAGEKISRLESEAEAL 403 (872)
Q Consensus 384 ee~~~le~~i~~Le~e~e~L 403 (872)
+++-.+...+..|+.+++.+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~ 87 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENK 87 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 45
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.56 E-value=9.3 Score=32.14 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002878 231 NSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLD 301 (872)
Q Consensus 231 ~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~Lq~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eld 301 (872)
..+++.+..+...+.+.++.+...+...++....+..++..+..++..++.++..+...+..+..++.+.+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666666666666666666677777777777777777777777776655544
No 46
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.26 E-value=3.8 Score=37.85 Aligned_cols=42 Identities=24% Similarity=0.178 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 149 SMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 149 ~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
+..++..+...+.+-......++........+|++|...+=+
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444455555555555555555554433
No 47
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.17 E-value=13 Score=32.89 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=43.5
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 002878 31 PSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSME---HVRILEEKLQNAV 87 (872)
Q Consensus 31 ~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~---~i~lleeri~~l~ 87 (872)
|-+.-++.-.+..++.++...++.+...+.++.+++..+..... .|.+++....-..
T Consensus 16 ~~~~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~ 75 (110)
T 2v4h_A 16 PRGSHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYK 75 (110)
T ss_dssp CTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666789999999999999999999999999998888666 4455544444333
No 48
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.58 E-value=19 Score=31.22 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=26.7
Q ss_pred HHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 92 KLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDH 162 (872)
Q Consensus 92 ~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~d 162 (872)
+|...+.+-.......++....+..++.+|+..+= ..++.+...-..+...+..+...+..+|.|
T Consensus 30 ~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF------eEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 30 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333334444444444444444444332 233443333333344444444444444443
No 49
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.44 E-value=13 Score=31.16 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002878 107 LESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQK 157 (872)
Q Consensus 107 Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~ 157 (872)
|..++..++.+.+........+.......+.....++.++..+++++..+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444444444444444444433333333
No 50
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.55 E-value=22 Score=33.46 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH
Q 002878 216 LEVTVADNRLETESLNSKVEEMHIDLQSKEDEIKLLMI 253 (872)
Q Consensus 216 ~Eee~~e~k~el~~l~~el~~~~~~L~~~~e~l~~l~~ 253 (872)
++..+.+++.......++..++...|..++..++....
T Consensus 57 lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraee 94 (147)
T 2b9c_A 57 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 94 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443333
No 51
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.41 E-value=3.1 Score=38.51 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=41.0
Q ss_pred HHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHH
Q 002878 104 WKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVD-CQKQQMDHLSLKLGSAEE 172 (872)
Q Consensus 104 ~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~-el~rql~dl~akLee~e~ 172 (872)
...+.+.++....++..|...+..-......++..+..++.+++++...+. ++|..+++.+.....++.
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~ 103 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEI 103 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666667666666666667777777777777777666553 355555555444433333
No 52
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=80.24 E-value=39 Score=31.74 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002878 119 DQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITK 176 (872)
Q Consensus 119 ~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~ 176 (872)
+.....+..+...-...+..+..++.++.+...-..+..+...++..++..++..+..
T Consensus 34 dE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLer 91 (147)
T 2b9c_A 34 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 91 (147)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333334333334444555555555555555555555555555555555544443
No 53
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=79.03 E-value=32 Score=29.92 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002878 151 NAVDCQKQQMDHLSLKLGSAEEIITKREKELEDL 184 (872)
Q Consensus 151 ~kl~el~rql~dl~akLee~e~~l~~~~~eLe~L 184 (872)
.....+.+++.++...+..++..+.-....|..|
T Consensus 60 ~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 60 REYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333343344444444444444334444433
No 54
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.32 E-value=58 Score=35.11 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhHHhHHHHH
Q 002878 467 INNLKQEHEKKEMLVDSIEKQF 488 (872)
Q Consensus 467 le~lrk~l~~Le~kiesLe~El 488 (872)
|..|+..|+++-.+|..|+..|
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 55
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=77.80 E-value=18 Score=29.72 Aligned_cols=64 Identities=23% Similarity=0.161 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002878 352 SEKDALQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEK 419 (872)
Q Consensus 352 ~e~~~L~~el~eL~~ql~~L~~~~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ 419 (872)
.++..|-.++.+|-.--..|.-+..+++.+++ .+..+...+..++..+...+..++..+.+++.
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvd----ELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVD----ELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666665554443 22233334444444444444444444444433
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.02 E-value=26 Score=32.58 Aligned_cols=108 Identities=14% Similarity=0.214 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhh
Q 002878 40 SFANLKLTAEKLVKEQASVKTD--LEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTL 117 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~e--l~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~ 117 (872)
.-+.++.-..-++..+..+... .-.+...---.-..+++..+-.. +......|...+.+...++..|..++.+++..
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFK-AKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777733 44444333333333333322221 22233444444444455555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002878 118 SDQLTETLQHLASQVQDAEKNKEFFEDKISS 148 (872)
Q Consensus 118 ~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e 148 (872)
++.+...+..+...+..++..+..++.++..
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666666666666655543
No 57
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=74.66 E-value=38 Score=28.58 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH
Q 002878 515 QITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEI 563 (872)
Q Consensus 515 ~L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~~eel~~~~k~ei 563 (872)
.|..++.+...++..+.+++.+|...+..++..+.....++. .++.++
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~-~~r~e~ 49 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQ-NMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 356677777778888888888888888887777776655555 444433
No 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.17 E-value=52 Score=35.51 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 002878 408 IETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMEN 449 (872)
Q Consensus 408 e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~ 449 (872)
++|+..|.-|+..|..-+..|.-++.-++.+..+|.+|+..+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555566666666666666666555553
No 59
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=72.62 E-value=13 Score=32.27 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHHhhh--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 576 EIVNMEKEK--ADKTIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQE 628 (872)
Q Consensus 576 Ei~~L~~~~--le~~l~e~e~r~~~~L~~~k~e~e~~l~~~~eE~e~~~~~~~~~ 628 (872)
.|..+.+.+ |+..+.+++.+|...+..+... |..++.++..++..++..
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~----i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRM----LTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 455677777 8999999999999988777543 466666666666555443
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.33 E-value=42 Score=28.12 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHh
Q 002878 79 LEEKLQNAVNENAKLKVKQKEDEKLWKGLESK 110 (872)
Q Consensus 79 leeri~~l~~~~~~L~~~i~el~~~~~~Le~k 110 (872)
++.||+.+-..++-|..++.+++.+-..|...
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333
No 61
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.30 E-value=57 Score=29.13 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=54.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 113 STKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREERD 192 (872)
Q Consensus 113 ~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee~~ 192 (872)
.+...++.|+.++..+..++...-.++..+++. +..+..+...+++.|..+....+..+..++..+...+....+..
T Consensus 3 ~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL 79 (112)
T 1x79_B 3 ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 79 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777766666666667665 66666777788888888888888777777777776666665543
No 62
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=69.52 E-value=60 Score=28.71 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 002878 465 EEINNLKQEHEKKEMLVDSIEKQFCQLQNIL 495 (872)
Q Consensus 465 eele~lrk~l~~Le~kiesLe~El~~Lk~~l 495 (872)
.+|..-|.....+...++.|..++..|+..+
T Consensus 76 ~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 76 ADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555443
No 63
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=68.83 E-value=1.5e+02 Score=32.86 Aligned_cols=22 Identities=5% Similarity=0.071 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 002878 355 DALQLVNQELNSKIIKLQKTQE 376 (872)
Q Consensus 355 ~~L~~el~eL~~ql~~L~~~~~ 376 (872)
......|++|+..+..+.....
T Consensus 61 rdv~~rI~kLkn~L~~~s~s~~ 82 (491)
T 1m1j_A 61 QNYSQRIDNIRQQLADSQNKYK 82 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHhhcc
Confidence 3455556666666666655443
No 64
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.53 E-value=56 Score=28.90 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=15.4
Q ss_pred HHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 341 DQLNDKFFSIASEKDALQLVNQELNSKIIKLQK 373 (872)
Q Consensus 341 ~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~ 373 (872)
..++.++..+......+..++.++..-+.+|..
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333344444444555555555555554444
No 65
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=66.86 E-value=39 Score=29.95 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhH
Q 002878 460 MQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGE 497 (872)
Q Consensus 460 l~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee 497 (872)
.+.....|..++..+..+..++..+..++..+...+++
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~e 45 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDE 45 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666667777777666666655554
No 66
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=64.50 E-value=51 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002878 516 ITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRHLKEIS 556 (872)
Q Consensus 516 L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~~eel~ 556 (872)
|..++.+...++..+.+++.+|...+..++..+...-.++.
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~ 45 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMA 45 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666667777777777776666665544444
No 67
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.31 E-value=1.3e+02 Score=33.20 Aligned_cols=40 Identities=15% Similarity=0.427 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 002878 410 TELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMEN 449 (872)
Q Consensus 410 le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~ 449 (872)
|+..|.-|+..|..-...|.-+.+-++.+..+|.+||..+
T Consensus 116 Le~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 116 LRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555555555555543
No 68
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.26 E-value=86 Score=29.44 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002878 124 TLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELE 182 (872)
Q Consensus 124 ~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe 182 (872)
.+..+...+..++..+..++.++....+.+..++-.+..++.++..++..+..++.+-.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555555555555555555554443333
No 69
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=62.91 E-value=52 Score=28.64 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=14.9
Q ss_pred HhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 343 LNDKFFSIASEKDALQLVNQELNSKIIKLQK 373 (872)
Q Consensus 343 l~~~~~~l~~e~~~L~~el~eL~~ql~~L~~ 373 (872)
++.++..+......+..++.++..-+.+|..
T Consensus 13 lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 13 LQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333444445555555555555555544
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.07 E-value=1.1e+02 Score=34.10 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002878 275 KLVTSIREIKNLEGFVHVFAA 295 (872)
Q Consensus 275 ~l~~le~e~~~l~~~l~~~~~ 295 (872)
+|+.++.++..+...|..+.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 71
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.85 E-value=50 Score=27.54 Aligned_cols=50 Identities=26% Similarity=0.263 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHH
Q 002878 85 NAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQD 134 (872)
Q Consensus 85 ~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~ 134 (872)
.+-+++..|..+..++.++..+.+.++.+++.++..|+..+..-++.|..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHH
Confidence 45566677777777777778888888888888887777777665444443
No 72
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=61.60 E-value=64 Score=27.22 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHHHHHhh
Q 002878 269 RDSFEKKLVTSIREIKNLEGFVHVFAAQLVDLDKQSLTFMEKFYQL 314 (872)
Q Consensus 269 ~d~~~~~l~~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl 314 (872)
.-++...|+.+..++..|.+.+..+...+..+.+.++.|+..++..
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888999999988888888888888777766543
No 73
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.30 E-value=76 Score=27.31 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 002878 40 SFANLKLTAEKLVKEQASVKTDLEMANSKLKKSM---EHVRILEEKLQNAV 87 (872)
Q Consensus 40 ~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~---~~i~lleeri~~l~ 87 (872)
.+..+...+...++.+...+..|..++..+.... ..+.++...+.-..
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~ 53 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYK 53 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777766665 45555555554444
No 74
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=60.73 E-value=83 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHH
Q 002878 471 KQEHEKKEMLVDSIEKQFCQLQNI 494 (872)
Q Consensus 471 rk~l~~Le~kiesLe~El~~Lk~~ 494 (872)
+..+..++....++...+......
T Consensus 66 ~~ql~e~~dE~~Sl~~q~~~~~~q 89 (96)
T 3q8t_A 66 KRQQLELDDELKSVENQMRYAQMQ 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 75
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.48 E-value=88 Score=27.45 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhH
Q 002878 464 EEEINNLKQEHEKKEMLVDSI 484 (872)
Q Consensus 464 eeele~lrk~l~~Le~kiesL 484 (872)
...+..++..+..+...+..+
T Consensus 77 ~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 77 KNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 76
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.38 E-value=42 Score=30.41 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002878 206 MDKNDAMIKKLEVTVADNRLETESLNSKVEEMHIDL 241 (872)
Q Consensus 206 ~~e~~~l~e~~Eee~~e~k~el~~l~~el~~~~~~L 241 (872)
..+.+.+++.+.-++...+.++..+..+.+.+..+|
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql 45 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQL 45 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777755555444433
No 77
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.10 E-value=1.1e+02 Score=28.61 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 002878 396 LESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEK 455 (872)
Q Consensus 396 Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~~ 455 (872)
|+.++..+...+.++...+......+..+..++..+.-++..++.++..++.+...+.++
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333444444444444445554444443
No 78
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=59.61 E-value=10 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHH
Q 002878 337 QNQYDQLNDKFFSIASEKDALQLVNQELNSKII 369 (872)
Q Consensus 337 k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~ 369 (872)
+..+..+|++|+.+...+..|+.++..|+.+|.
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999988875
No 79
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=57.58 E-value=2.4e+02 Score=31.54 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 002878 58 VKTDLEMANSKL 69 (872)
Q Consensus 58 lq~el~e~~~ki 69 (872)
+...|.+++..+
T Consensus 98 V~~~LqeLe~~l 109 (464)
T 1m1j_B 98 VKPVLRDLKDRV 109 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHhHHHHHHHHH
Confidence 333333333333
No 80
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.58 E-value=1.1e+02 Score=27.29 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHHhHHHH
Q 002878 466 EINNLKQEHEKKEMLVDSIEKQ 487 (872)
Q Consensus 466 ele~lrk~l~~Le~kiesLe~E 487 (872)
+|..++..+.+....++.|..+
T Consensus 79 EI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333333
No 81
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.20 E-value=1.2e+02 Score=27.52 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002878 162 HLSLKLGSAEEIITKREKELEDLKIEREER 191 (872)
Q Consensus 162 dl~akLee~e~~l~~~~~eLe~Lk~~lee~ 191 (872)
++-+-|.+....+..+...+.-|+.+++++
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELEdE 131 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELENE 131 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443
No 82
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=55.40 E-value=1.1e+02 Score=27.17 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=1.8
Q ss_pred HHHhHHhHHHHHHHHHHH
Q 002878 477 KEMLVDSIEKQFCQLQNI 494 (872)
Q Consensus 477 Le~kiesLe~El~~Lk~~ 494 (872)
+..++..|+.+.+||...
T Consensus 89 V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 89 VSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHTC--------------
T ss_pred HHHHHHHHHhhccchhhh
Confidence 444445555555555443
No 83
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.94 E-value=2.6e+02 Score=31.20 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002878 355 DALQLVNQELNSKIIKLQ 372 (872)
Q Consensus 355 ~~L~~el~eL~~ql~~L~ 372 (872)
..+...+++|+..+..+.
T Consensus 96 ~~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 96 KTVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHh
Confidence 345555555665555553
No 84
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.21 E-value=45 Score=28.91 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002878 516 ITENQAQLTAAESRLSEAKKQYDLMLESKQLELSRHLKEIS 556 (872)
Q Consensus 516 L~elr~q~e~~e~~~~eae~~y~~~leeLq~e~~~~~eel~ 556 (872)
|..++.+...++..+.+++.+|...+..++..+.....++.
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~ 54 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMA 54 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555556666666666666655554444444
No 85
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=47.85 E-value=3.1e+02 Score=30.64 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002878 535 KQYDLMLESKQLELS 549 (872)
Q Consensus 535 ~~y~~~leeLq~e~~ 549 (872)
..|+.++...+.++.
T Consensus 5 a~yq~~la~yq~ela 19 (497)
T 3iox_A 5 ADYQAKLTAYQTELA 19 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 86
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=46.96 E-value=3.1e+02 Score=29.70 Aligned_cols=49 Identities=10% Similarity=0.258 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 119 DQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 119 ~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
..+..+-..+.+.+..+..-+..++..+.......-++.++++.+.-.+
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 3344444444444444444455555555555555555566666555555
No 87
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=46.95 E-value=91 Score=23.83 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 38 SGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQ 84 (872)
Q Consensus 38 ~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~ 84 (872)
..++..|-.++..|..+++.+..++..+...+....++-.-..+|++
T Consensus 3 ~aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 3 NAKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555566666666666666666666555555555554444444444
No 88
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=45.95 E-value=30 Score=28.88 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002878 127 HLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEII 174 (872)
Q Consensus 127 ~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l 174 (872)
.+..+|.++|..+...++-+++++..+....++++.+..++..+...+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555554444333
No 89
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.59 E-value=1.3e+02 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002878 208 KNDAMIKKLEVTVADNRLETES 229 (872)
Q Consensus 208 e~~~l~e~~Eee~~e~k~el~~ 229 (872)
-+..++.+++.-....+.+++.
T Consensus 10 il~eiRaQYE~ia~knr~EaE~ 31 (77)
T 3trt_A 10 AMRDVRQQYESVAAKNLQEAEE 31 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444455444444444433
No 90
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=44.43 E-value=40 Score=24.18 Aligned_cols=27 Identities=15% Similarity=-0.015 Sum_probs=22.1
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 265 LQMSRDSFEKKLVTSIREIKNLEGFVH 291 (872)
Q Consensus 265 Lq~e~d~~~~~l~~le~e~~~l~~~l~ 291 (872)
|.+....|.++|+.++.++..|+..+.
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557899999999999999988654
No 91
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.66 E-value=1.4e+02 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.175 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002878 411 ELLVSKLEKEIDSLL 425 (872)
Q Consensus 411 e~~i~eLe~ei~~l~ 425 (872)
-..+.+|..+...+.
T Consensus 36 I~rvdELt~E~e~l~ 50 (77)
T 2w83_C 36 IAKVDELTCEKDVLQ 50 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH
Confidence 333333333333333
No 92
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=43.10 E-value=1.9e+02 Score=29.23 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 002878 42 ANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWK 105 (872)
Q Consensus 42 ~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~ 105 (872)
+.+-..++-+.-+..-+..+|.++..+|+.+..-...+-.|+..++.+-.-|+..+..++.++.
T Consensus 159 ~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 159 QTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334445555666666677777777777766666666666666666555555555555444433
No 93
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.52 E-value=1.7e+02 Score=25.52 Aligned_cols=76 Identities=5% Similarity=0.045 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002878 115 KTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDLKIEREE 190 (872)
Q Consensus 115 k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akLee~e~~l~~~~~eLe~Lk~~lee 190 (872)
...+....-.-.+++..+..+-=.+..|.+.+++....+.++.+...+....++...-.+..+...+..++.++.+
T Consensus 8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555555555555554444444444444444444444443
No 94
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=40.85 E-value=1.7e+02 Score=25.08 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHh
Q 002878 464 EEEINNLKQEHEKKEMLVDSIEKQFCQLQNILG 496 (872)
Q Consensus 464 eeele~lrk~l~~Le~kiesLe~El~~Lk~~le 496 (872)
..+|..-|.....+...++.|..++..++..+.
T Consensus 53 ~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 53 KADFQAERHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666666665555543
No 95
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=40.74 E-value=1.7e+02 Score=24.99 Aligned_cols=86 Identities=10% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHH
Q 002878 53 KEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQV 132 (872)
Q Consensus 53 ~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i 132 (872)
..++.+-..++.+...+.+...-+-....++-...+.+..-...+......| .+-+..|.+.+.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~l--------------Qqh~aRlnsqQrQI 71 (114)
T 2xzr_A 6 DKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTL--------------QQHSARLDSQQRQI 71 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHH--------------HHHHHHHHhHHHHH
Confidence 3344444445555555555555444444444444433333333333333332 33334444444455
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 002878 133 QDAEKNKEFFEDKISSSMNA 152 (872)
Q Consensus 133 ~~~E~~~~~lE~el~e~~~k 152 (872)
.+--++++.++++..++-++
T Consensus 72 ~ENhkEMKq~aaqsaaLlsk 91 (114)
T 2xzr_A 72 NENHKEMKQIEDKIEEILSK 91 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 54455555555444444333
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.62 E-value=1.1e+02 Score=24.92 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhH
Q 002878 456 FHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGE 497 (872)
Q Consensus 456 lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee 497 (872)
|+..++.+.++|......+..++.++.....+|..|+..++.
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555555555555544
No 97
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.60 E-value=64 Score=28.20 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002878 606 EAKQQLKRIQEEHAAIVISI 625 (872)
Q Consensus 606 e~e~~l~~~~eE~e~~~~~~ 625 (872)
..+..+..|+.||+.++..+
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888887654
No 98
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=36.25 E-value=2.1e+02 Score=24.61 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002878 131 QVQDAEKNKEFFEDKISSSMNAVDCQKQ 158 (872)
Q Consensus 131 ~i~~~E~~~~~lE~el~e~~~kl~el~r 158 (872)
.+..++..+..++..+..+...+.++..
T Consensus 73 ~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 73 KLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 99
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=36.11 E-value=1.9e+02 Score=24.23 Aligned_cols=26 Identities=23% Similarity=0.297 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 410 TELLVSKLEKEIDSLLENLRSFENKL 435 (872)
Q Consensus 410 le~~i~eLe~ei~~l~~ei~e~E~~~ 435 (872)
+...|..|..+|..|...++....++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l 50 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQL 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33334444444444444443333333
No 100
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=34.84 E-value=1.3e+02 Score=23.25 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHhHhhhhhhhHHHHHHHHHHHHHHHH
Q 002878 104 WKGLESKFSSTKTLSDQLTETLQHLASQVQD 134 (872)
Q Consensus 104 ~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~ 134 (872)
...+...+..++..++++.+.+..+...|..
T Consensus 21 ~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 21 CSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 101
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=34.28 E-value=2.4e+02 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002878 119 DQLTETLQHLASQVQDAEKNKEFFEDKISSSM 150 (872)
Q Consensus 119 ~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~ 150 (872)
.+++.++......-.+++..+..|+..+.++.
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443334444444444444444443
No 102
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=33.77 E-value=45 Score=23.13 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhh--HHHHHH
Q 002878 566 IRRKYEVEKLEIVNMEKEK--ADKTIG 590 (872)
Q Consensus 566 lrr~i~~L~~Ei~~L~~~~--le~~l~ 590 (872)
++++....+.+|+.+..+| |+.++.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3555566666666666666 555543
No 103
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.34 E-value=65 Score=26.80 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=9.1
Q ss_pred HHHHHHhHhhhhhhhHHHHHHHHH
Q 002878 104 WKGLESKFSSTKTLSDQLTETLQH 127 (872)
Q Consensus 104 ~~~Le~k~s~~k~~~~~l~~~l~~ 127 (872)
+..|+.+++-...-+++|+..+..
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~ 39 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALAD 39 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 104
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=32.25 E-value=66 Score=37.26 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=31.7
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 002878 30 RPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLES 109 (872)
Q Consensus 30 ~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~ 109 (872)
|..||+ ...+.++.+..+-......-+..+..-....+........++.++..+.....+....+.........|+.
T Consensus 294 ~r~~d~---~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e 370 (575)
T 2i1j_A 294 RRKPDT---IDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEE 370 (575)
T ss_dssp HTSCCC---HHHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444553 35566666665555444433333333333333333444444444444444444444444333333333333
No 105
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=31.48 E-value=80 Score=28.62 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=7.2
Q ss_pred hhhhhhHHHHHHHHHH
Q 002878 203 SNLMDKNDAMIKKLEV 218 (872)
Q Consensus 203 ~~l~~e~~~l~e~~Ee 218 (872)
..+...|..+...+..
T Consensus 86 AqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 86 AQLQVAYHQLFQEYDN 101 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 106
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.02 E-value=6.6e+02 Score=28.88 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 599 KLAECKEEAKQQLKRIQEEHAAIVI 623 (872)
Q Consensus 599 ~L~~~k~e~e~~l~~~~eE~e~~~~ 623 (872)
.+.+.++..+..+.+|.+.|+.-+.
T Consensus 516 ~~~~~~~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 516 MMEQKERSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455554444444444
No 107
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.23 E-value=90 Score=23.90 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 002878 465 EEINNLKQEHEKKEMLVDSIEKQFCQLQNIL 495 (872)
Q Consensus 465 eele~lrk~l~~Le~kiesLe~El~~Lk~~l 495 (872)
.+++.++.+..+|..++..|..++..++..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777666666554
No 108
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=28.87 E-value=1.2e+02 Score=19.94 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 39 GSFANLKLTAEKLVKEQASVKTDLEMAN 66 (872)
Q Consensus 39 ~~l~~lk~~l~~l~~e~e~lq~el~e~~ 66 (872)
|+++.++.++..+..++..++-+|..++
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777766665554
No 109
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=27.69 E-value=2.9e+02 Score=23.63 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 002878 177 REKELEDLK 185 (872)
Q Consensus 177 ~~~eLe~Lk 185 (872)
...++..++
T Consensus 95 ~ene~ar~k 103 (114)
T 2xzr_A 95 IENEIARIK 103 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 110
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.43 E-value=3e+02 Score=24.18 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHhhHHHHHHHHhhHHhHHHhhh
Q 002878 278 TSIREIKNLEGFVHVFAAQLVDLDKQSLTFMEKFYQLNSHYESCFQ 323 (872)
Q Consensus 278 ~le~e~~~l~~~l~~~~~~l~eldkk~~~f~~k~~kl~~~~~~~~~ 323 (872)
....++..|...+..+...+..++++..=|+.|+..+.-+|....+
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555566666666666666666788777777776544
No 111
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.08 E-value=73 Score=36.87 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 002878 43 NLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGL 107 (872)
Q Consensus 43 ~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~L 107 (872)
.......++...+..++.+.......+.+....+..|.++...+..+...|.....++......|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556666666666666666666666666666655555555554444433333
No 112
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=25.71 E-value=4.8e+02 Score=26.28 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Q 002878 42 ANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEK 102 (872)
Q Consensus 42 ~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~ 102 (872)
..|+.....+...++-+--.=..+..+|..+...|..|...+..+...++.|+.....++.
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~ 212 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLED 212 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444444444433333344444444444444444444444444444444433333
No 113
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.87 E-value=3e+02 Score=22.89 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHH
Q 002878 71 KSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTE 123 (872)
Q Consensus 71 k~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~ 123 (872)
.+-.+++.+.-++..+.+++-+.+..+...+..+..|...+..-.+++..|..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444433
No 114
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=24.62 E-value=4.3e+02 Score=27.71 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhhhcH
Q 002878 662 LKSEHEVQMKALQCQHEDECRKLHEELHLQKSK 694 (872)
Q Consensus 662 ~~~~~e~qik~lq~~~ee~~~~~~~~~~~q~~~ 694 (872)
++..+..+..+|+.+++.- .++|+.++..
T Consensus 247 ~~~ql~~~aeel~~kl~~~----~eeLr~~l~P 275 (307)
T 2l7b_A 247 VRAKLEEQAQQIRLQAEAA----QARLKSRFEP 275 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHhH----HHHHHHHhhh
Confidence 4444677777777777665 4445544443
No 115
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=24.61 E-value=1.4e+02 Score=22.65 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Q 002878 654 ELREKTTKLKSEHEVQMKALQCQHEDECR 682 (872)
Q Consensus 654 ~~~~~~~~~~~~~e~qik~lq~~~ee~~~ 682 (872)
++...+..++..||.+|.+|+.+|.-.-+
T Consensus 14 EL~~rl~~Ld~~Me~Ei~elr~RY~~KRq 42 (51)
T 2jo8_A 14 DLQKRLLALDPMMEQEIEEIRQKYQSKRQ 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHhHh
Confidence 67778889999999999999999976633
No 116
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=23.71 E-value=3.5e+02 Score=23.56 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002878 227 TESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDL-QMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDL 300 (872)
Q Consensus 227 l~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~L-q~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~el 300 (872)
....+.+-..++.++..+.+.++.+.++..++-....-. -..+|+++..|-.+-..+..+...+.+-..++..+
T Consensus 16 ~q~~~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qI 90 (101)
T 3teq_A 16 VQYYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQI 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777888887777777776665554 34457777777666666666666555555444444
No 117
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.31 E-value=4.5e+02 Score=24.38 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002878 52 VKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQ 97 (872)
Q Consensus 52 ~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i 97 (872)
...-+.++..+..+...+........-+..++..+......|...+
T Consensus 28 ~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~l 73 (155)
T 2oto_A 28 RHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKL 73 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333444444444444444444333
No 118
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.26 E-value=3.3e+02 Score=22.80 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=35.5
Q ss_pred ccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 002878 26 SFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWK 105 (872)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~ 105 (872)
+.++++++--.||-. +.++..+...|..+...+..+...+..-.-- ..--.++..+...++.+...+..+-.+|.
T Consensus 6 a~~~kk~~~KLSyke----qrEle~le~~Ie~LE~~i~~le~~ladp~~y-~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 6 AETVKRSSSKLSYKL----QRELEQLPQLLEDLEAKLEALQTQVADASFF-SQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp CCCCSSSSCSCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGG-GSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677733 3445555555555555544444444321000 00113334444444455555555555555
Q ss_pred HHHH
Q 002878 106 GLES 109 (872)
Q Consensus 106 ~Le~ 109 (872)
.|+.
T Consensus 81 eLe~ 84 (89)
T 2lw1_A 81 YLEA 84 (89)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 119
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.15 E-value=2.8e+02 Score=21.83 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 002878 460 MQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNIL 495 (872)
Q Consensus 460 l~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~l 495 (872)
...+......+......|..++..|+.|+.+|+..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566667777777777777776654
No 120
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.41 E-value=3.3e+02 Score=22.54 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002878 392 KISRLESEAEALISKKIETELLVSKLEKEID 422 (872)
Q Consensus 392 ~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~ 422 (872)
++..|..--++|..-...+...|..|+.+..
T Consensus 26 El~sLrrT~~EL~~G~~KL~~mi~~l~~E~~ 56 (78)
T 3iv1_A 26 ELNALKRTEEDLKKGHQKLEEMVTRLDQEVA 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444433333
No 121
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=22.12 E-value=4.6e+02 Score=24.04 Aligned_cols=74 Identities=5% Similarity=0.110 Sum_probs=39.4
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-h--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002878 227 TESLNSKVEEMHIDLQSKEDEIKLLMITKENLEKEKSDL-Q--MSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDL 300 (872)
Q Consensus 227 l~~l~~el~~~~~~L~~~~e~l~~l~~~~~~lEKek~~L-q--~e~d~~~~~l~~le~e~~~l~~~l~~~~~~l~el 300 (872)
+...+.+-..++.++..+.+.++.+.++..++-....-. - ..+|+++..|-.+-..+.++...+.+-..++..+
T Consensus 47 ~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qI 123 (136)
T 3ter_A 47 MAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQI 123 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666555554444332221 2 4567777777777666666666565555544444
No 122
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=21.13 E-value=3.4e+02 Score=22.11 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002878 44 LKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKE 99 (872)
Q Consensus 44 lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~e 99 (872)
+-.+++-+.-+..-+-++|.++.-+|+.+.+-..+.=.|+..++.+-.-|+..+..
T Consensus 5 ~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~ 60 (72)
T 2xu6_A 5 LVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34456666666677777777777777777776666666666655554444444433
No 123
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=20.37 E-value=4.6e+02 Score=23.31 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 447 MENKENMEKFHAEMQKKEEEINNLKQEHEKKE 478 (872)
Q Consensus 447 ~~~~~~~~~lq~el~~~eeele~lrk~l~~Le 478 (872)
.++.+.+.++...+++++.++...++.++.+.
T Consensus 68 ~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~ 99 (115)
T 3vem_A 68 RKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDK 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556665655655555554443
No 124
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.31 E-value=4.3e+02 Score=23.03 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHH
Q 002878 462 KKEEEINNLKQEHEKKEMLVDSIE 485 (872)
Q Consensus 462 ~~eeele~lrk~l~~Le~kiesLe 485 (872)
++..+++.++...+.|...+..+.
T Consensus 55 eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 55 EKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333
Done!