Query 002878
Match_columns 872
No_of_seqs 455 out of 1719
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 05:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002878.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002878hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 73.7 13 0.00093 30.8 10.7 25 350-374 20-44 (107)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 66.7 19 0.0013 29.7 10.1 33 463-495 70-102 (107)
3 d1gs9a_ a.24.1.1 (A:) Apolipop 56.8 57 0.0042 27.9 12.5 19 659-677 120-138 (144)
4 d1gs9a_ a.24.1.1 (A:) Apolipop 56.5 46 0.0033 28.6 11.4 15 666-680 116-130 (144)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 46.4 78 0.0057 26.4 12.6 36 128-163 93-128 (133)
6 d1e5qa2 d.81.1.2 (A:125-391) S 43.2 2.7 0.0002 41.5 0.5 31 789-822 234-264 (267)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 39.8 99 0.0072 25.7 12.9 9 136-144 94-102 (133)
8 d1seta1 a.2.7.1 (A:1-110) Sery 38.3 90 0.0065 25.2 9.8 11 123-133 71-81 (110)
9 d1lrza1 a.2.7.4 (A:245-309) Me 25.0 1.2E+02 0.0086 22.4 7.1 43 642-685 6-60 (65)
10 d2gycc1 c.22.1.1 (C:1-198) Rib 21.9 45 0.0033 30.6 5.2 62 790-851 27-91 (198)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=73.74 E-value=13 Score=30.81 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 350 IASEKDALQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 350 l~~e~~~L~~el~eL~~ql~~L~~~ 374 (872)
+......+..++.+...-+++|...
T Consensus 20 ~~~q~~~le~q~~E~~~vl~eL~~l 44 (107)
T d1fxka_ 20 ISVQKQTVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444455555555555555555543
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=66.65 E-value=19 Score=29.74 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 002878 463 KEEEINNLKQEHEKKEMLVDSIEKQFCQLQNIL 495 (872)
Q Consensus 463 ~eeele~lrk~l~~Le~kiesLe~El~~Lk~~l 495 (872)
+...++.+...+..++.++..+..++..++..+
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555554443
No 3
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=56.79 E-value=57 Score=27.93 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=9.1
Q ss_pred HHHhhhHHHHHHHHHHHHh
Q 002878 659 TTKLKSEHEVQMKALQCQH 677 (872)
Q Consensus 659 ~~~~~~~~e~qik~lq~~~ 677 (872)
.+.++..+...+.+|+.+|
T Consensus 120 ~eel~~~l~~~~eel~~kL 138 (144)
T d1gs9a_ 120 LRKLRKRLLRDADDLQKRL 138 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555444
No 4
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=56.48 E-value=46 Score=28.62 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhHH
Q 002878 666 HEVQMKALQCQHEDE 680 (872)
Q Consensus 666 ~e~qik~lq~~~ee~ 680 (872)
+.-.+.+|+.++...
T Consensus 116 l~p~~eel~~~l~~~ 130 (144)
T d1gs9a_ 116 LASHLRKLRKRLLRD 130 (144)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=46.36 E-value=78 Score=26.44 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 128 LASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHL 163 (872)
Q Consensus 128 l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl 163 (872)
+..+|..++..+..+...+..+...+..+...+..+
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555555544444433
No 6
>d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Probab=43.21 E-value=2.7 Score=41.45 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=26.8
Q ss_pred ccccccccccCCCCccccccccccccccccCCCC
Q 002878 789 KVTHHEYEVETSNGRTITKRRKTKSTVMFEDPGK 822 (872)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (872)
=|=||+++|+.+||+ +.+.|-+-|.||+|+-
T Consensus 234 IvM~H~f~~~~~dG~---~e~~tstlv~~G~p~G 264 (267)
T d1e5qa2 234 VMLQHKFEIENKDGS---RETRTSSLCEYGAPIG 264 (267)
T ss_dssp EEEEEEEEEECTTSC---EEEEEEEEEEECCCTT
T ss_pred EEEEEEEEEEcCCCC---eEEEEEeEEEEcCCCC
Confidence 378999999999998 4667888999999974
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.79 E-value=99 Score=25.73 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=3.2
Q ss_pred HHhHHHHHH
Q 002878 136 EKNKEFFED 144 (872)
Q Consensus 136 E~~~~~lE~ 144 (872)
++++..++.
T Consensus 94 ~~ri~~l~~ 102 (133)
T d1fxkc_ 94 KSQKNELES 102 (133)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=38.30 E-value=90 Score=25.25 Aligned_cols=11 Identities=9% Similarity=0.126 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 002878 123 ETLQHLASQVQ 133 (872)
Q Consensus 123 ~~l~~l~~~i~ 133 (872)
..+..+...|.
T Consensus 71 ~~~k~lk~~i~ 81 (110)
T d1seta1 71 ARGKALGEEAK 81 (110)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 9
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=24.97 E-value=1.2e+02 Score=22.41 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHhhHHHHHHH
Q 002878 642 GELKCAELQAENELREKTTKLKSE------------HEVQMKALQCQHEDECRKLH 685 (872)
Q Consensus 642 ~el~~~q~~~~~~~~~~~~~~~~~------------~e~qik~lq~~~ee~~~~~~ 685 (872)
.+|...+.+++.+|......+.++ +++|+-.++.++++. ..+.
T Consensus 6 ~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea-~~li 60 (65)
T d1lrza1 6 KELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG-KRLQ 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 445555555666666666555554 677777777777776 4443
No 10
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]}
Probab=21.91 E-value=45 Score=30.55 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=43.1
Q ss_pred cccccccccCCCCcccccccccccccccc--CCCCcccccCCCCCCccccccccCCCCC-CCCCC
Q 002878 790 VTHHEYEVETSNGRTITKRRKTKSTVMFE--DPGKRKKMNTTQAKTPRSVAKGATGGAN-PHPSN 851 (872)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 851 (872)
+=|.-+-..-+|-|.=|..-||||-|-.+ =|-+||-+-.++.++-++-...-+|-.| |+|-+
T Consensus 27 llh~~v~~~~a~~R~gt~~tKtRseV~g~gkKp~~QKGTGrAR~Gs~rsP~~~gGGva~GP~pr~ 91 (198)
T d2gycc1 27 LVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQD 91 (198)
T ss_dssp HHTTTSSSCTTCCSCCCCSSCSCCCCCCSCSSCSCCCCCCCBTTBCCSCSSSSSCCCSSCSCCSS
T ss_pred HHHHHHHHHHHhccCCCcccceehhccCCccCcccccCCCCCCCcCcchhhcccCceecCccccC
Confidence 44666666789999889999999999988 6888887766666666665543333333 55544
Done!