BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002879
(871 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 279 bits (713), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 138/221 (62%), Positives = 164/221 (74%), Gaps = 10/221 (4%)
Query: 2 TFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPI 61
TF YT RTAFERPL SGVAYA +V+ ERE FE+Q W IK MD + EPSP+
Sbjct: 58 TFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMD--------RGEPSPV 109
Query: 62 EEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILT 121
+EYAPVIF+QD+VS++ SLDM+SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LT
Sbjct: 110 RDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLT 169
Query: 122 FAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSH 181
F VYK LP N T ERI AT GYLGG FD+ESLVE LL QLA Q I V+VYDITN S
Sbjct: 170 FPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASD 229
Query: 182 PISMYGSN--VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKA 220
P+ MYG+ +D L S L+FGDPFRKH+M CR+ QKA
Sbjct: 230 PLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKA 270
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 7/144 (4%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 785
KIL+V+DN +N+ VA + +K+ G + G +A + +D MD+ MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI-NSSSYDLVLMDVCMPVLDGL 68
Query: 786 EATKIIREMEH--NFNNRIRRG-EVSIEAYENVS---NFHVPILAMTADVIQATYEECLR 839
+AT++IR E N+N I G ++S E V +PI+AMTA+ + + EEC
Sbjct: 69 KATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECYA 128
Query: 840 SGMDGYVSKPFEAEQLYREVSRFF 863
+GMD ++SKP ++L + ++
Sbjct: 129 NGMDSFISKPVTLQKLRECLQQYL 152
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 36/162 (22%)
Query: 702 VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV--CVERGKK 759
+GN + + PS L G+++L+VDDN ++ KVA LK+ G + V C + GK+
Sbjct: 41 IGNPEDEQETSKPSDD--EFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQC-DSGKE 97
Query: 760 A----TELLMPPHQ--------FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 807
A TE L + FD FMD QMPEMDG+EAT+ IR++E ++ R
Sbjct: 98 ALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVR------ 151
Query: 808 SIEAYENVSNFHVPILAMTA-DVIQATYEECLRSGMDGYVSK 848
PI+A++ D E +++GMD ++ K
Sbjct: 152 ------------TPIIAVSGHDPGSEEARETIQAGMDAFLDK 181
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 60/274 (21%)
Query: 271 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINE 329
A+ K F+ VS+E+RTP+ ++G ++L + + +++V +A+ L I++
Sbjct: 36 AERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDD 95
Query: 330 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 389
VLD A++++G++ LE + +L + +Q GV LAV + V + GD
Sbjct: 96 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDV-GLIRGDGK 154
Query: 390 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHS 449
R Q + +L+ +N L P R
Sbjct: 155 RLAQTLDHLV-----------------------------------ENALRQTPPGGRVTL 179
Query: 450 WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 509
S+ L + + V DTG+G+P Q+ IF F + R
Sbjct: 180 -----------------SARRALGEVRLDVSDTGRGVPFHVQAHIFDRF------VGRDR 216
Query: 510 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 543
GG G+GL++ K LV G + S P GSTFT
Sbjct: 217 GGPGLGLALVKALVELHGGWVALESEPGNGSTFT 250
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 56/276 (20%)
Query: 272 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDV-TQQDYVRTAQASGKALVSLIN 328
D K++F+A +SHE+RTP+ + + + ++ ELD+ T ++++ L +L+N
Sbjct: 17 DRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76
Query: 329 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 388
E+LD +++E L++ +L +++ ++ + V + + P DP
Sbjct: 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDP 136
Query: 389 GRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 446
R RQ++ NL+ N +K+++K +V V L E
Sbjct: 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--------------------------- 169
Query: 447 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 506
+DG +++ VED G GIP A+ RIF F +V S++
Sbjct: 170 -----------KDGG-------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT 205
Query: 507 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 542
GTG+GL+I+K +V G I S GS F
Sbjct: 206 YEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRF 241
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 56/276 (20%)
Query: 272 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDV-TQQDYVRTAQASGKALVSLIN 328
D K++F+A +SHE+RTP+ + + + ++ ELD+ T ++++ L +L+N
Sbjct: 17 DRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76
Query: 329 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 388
E+LD +++E L++ +L +++ ++ + V + + P DP
Sbjct: 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDP 136
Query: 389 GRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 446
R RQ++ NL+ N +K+++K +V V L E
Sbjct: 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--------------------------- 169
Query: 447 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 506
+DG +++ VED G GIP A+ RIF F +V S++
Sbjct: 170 -----------KDGG-------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT 205
Query: 507 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 542
GTG+GL+I+K +V G I S GS F
Sbjct: 206 YEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRF 241
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 26/142 (18%)
Query: 726 KILIVDDNNVNLKVAA-----AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 780
KIL+V+DN+VN +V G++ A E K EL ++ FMD+QMP
Sbjct: 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 63
Query: 781 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 840
++DG +TK+IR + PI+A+TA + +ECL S
Sbjct: 64 KVDGLLSTKMIRR---------------------DLGYTSPIVALTAFADDSNIKECLES 102
Query: 841 GMDGYVSKPFEAEQLYREVSRF 862
GM+G++SKP + +L ++ F
Sbjct: 103 GMNGFLSKPIKRPKLKTILTEF 124
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 26/142 (18%)
Query: 726 KILIVDDNNVNLKVAA-----AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 780
KIL+V+DN+VN +V G++ A E K EL ++ FMD+QMP
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 62
Query: 781 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 840
++DG +TK+IR + PI+A+TA + +ECL S
Sbjct: 63 KVDGLLSTKMIRR---------------------DLGYTSPIVALTAFADDSNIKECLES 101
Query: 841 GMDGYVSKPFEAEQLYREVSRF 862
GM+G++SKP + +L ++ F
Sbjct: 102 GMNGFLSKPIKRPKLKTILTEF 123
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 786
+LI +DN++ VAA L++ + V G +A + QFD MDIQMP MDG E
Sbjct: 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPVMDGLE 71
Query: 787 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG--MDG 844
A IR E N + I+A+TAD I R G +D
Sbjct: 72 AVSEIRNYERTHNTK-----------------RASIIAITADTIDDD-----RPGAELDE 109
Query: 845 YVSKPFEAEQL 855
YVSKP QL
Sbjct: 110 YVSKPLNPNQL 120
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 475 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 534
L +SV+D G GIP + ++F F +V + +R GGTG+GL+I+K +V G+I S
Sbjct: 78 LYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADS 137
Query: 535 IPNIGSTFTFT 545
I G+T TFT
Sbjct: 138 IEGKGTTITFT 148
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 786
IL+VDD+ +N ++ A L G G A +L H D D+ MP MDG+
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 190
Query: 787 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846
T+ IR++ +P++ +TA+ + + CL SGMD +
Sbjct: 191 LTQRIRQL----------------------GLTLPVIGVTANALAEEKQRCLESGMDSCL 228
Query: 847 SKPFEAEQLYREVSRF 862
SKP + + + ++ +
Sbjct: 229 SKPVTLDVIKQTLTLY 244
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 67/247 (27%)
Query: 280 ATVSHEIRTPMNGVLGMLDMLMDTELD--VTQQDYVRTAQASGKALVSLINEVLDQAKVE 337
A V+HEIR P+ ++G M M LD T + Y+ L +++ E+L+ +K
Sbjct: 137 ARVAHEIRNPIT-IIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK-- 193
Query: 338 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 397
+ LE FNL ++ +V LF K + ++ + +D + D R +Q++ N
Sbjct: 194 -ERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQVLIN 251
Query: 398 LMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 457
L+ N+I+ T
Sbjct: 252 LVQNAIEAT--------------------------------------------------- 260
Query: 458 QDGSTSPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 516
G K +S D+ + VSV ++G IP E + +IF+PF ++T GTG+GL
Sbjct: 261 --GENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT-----TKTQ-GTGLGL 312
Query: 517 SISKYLV 523
SI + ++
Sbjct: 313 SICRKII 319
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784
+K+LIV+DN +N+K+ L+ G + G A + ++ D MDIQ+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSI-ARENKPDLILMDIQLPEISG 60
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
E TK ++E + H+P++A+TA ++ E G +
Sbjct: 61 LEVTKWLKE--------------------DDDLAHIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 845 YVSKPFEAEQLYREVSRFFPPIP 867
Y+SKP + R P
Sbjct: 101 YISKPISVVHFLETIKRLLERQP 123
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 786
IL+VDD+ +N ++ A L G G A +L H D D+ MP MDG+
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 69
Query: 787 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846
T+ IR++ +P++ +TA+ + + CL SGMD +
Sbjct: 70 LTQRIRQL----------------------GLTLPVIGVTANALAEEKQRCLESGMDSCL 107
Query: 847 SKP 849
SKP
Sbjct: 108 SKP 110
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 714 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 773
P + R + ++L+ DD+ N V L++ G V+CV ++ + M +DA
Sbjct: 4 PFLRHRARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDA-MAEEDYDAV 62
Query: 774 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833
+D+ MP M+G + K +R M+ + + P++ ++ADV
Sbjct: 63 IVDLHMPGMNGLDMLKQLRVMQAS------------------GMRYTPVVVLSADVTPEA 104
Query: 834 YEECLRSGMDGYVSKPFEAEQL 855
C ++G +++KP A +L
Sbjct: 105 IRACEQAGARAFLAKPVVAAKL 126
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF--DACFMDIQMP 780
+ +K+L+VDD+ V K+ + LK+ G V+ E G+ A E L +F D +DI MP
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---SEFTPDLIVLDIMMP 57
Query: 781 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 840
MDGF K ++E E +R +P++ +TA + L
Sbjct: 58 VMDGFTVLKKLQEKEE-----WKR---------------IPVIVLTAKGGEEDESLALSL 97
Query: 841 GMDGYVSKPFEAEQLYREVSRFF 863
G + KPF Q EV
Sbjct: 98 GARKVMRKPFSPSQFIEEVKHLL 120
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 24/137 (17%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 782
+ +KIL+VDD + L++ G V C G +A E++ Q D +DI +P
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-EELQPDLILLDIMLPNK 59
Query: 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 842
DG E + +R+ + +PI+ +TA + L G
Sbjct: 60 DGVEVCREVRK-----------------------KYDMPIIMLTAKDSEIDKVIGLEIGA 96
Query: 843 DGYVSKPFEAEQLYREV 859
D YV+KPF +L V
Sbjct: 97 DDYVTKPFSTRELLARV 113
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 24/137 (17%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 782
+ +KIL+VDD + L++ G V C G +A E++ Q D +DI +P
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-EELQPDLILLDIMLPNK 59
Query: 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 842
DG E + +R+ + +PI+ +TA + L G
Sbjct: 60 DGVEVCREVRK-----------------------KYDMPIIMLTAKDSEIDKVIGLEIGA 96
Query: 843 DGYVSKPFEAEQLYREV 859
D YV+KPF +L V
Sbjct: 97 DDYVTKPFSTRELLARV 113
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784
+KILIVDD + + + G VV G++A E Q D +D+ +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-EAEQPDIIILDLMLPEIDG 60
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
E K IR+ VPIL ++A + L G D
Sbjct: 61 LEVAKTIRKTS-----------------------SVPILMLSAKDSEFDKVIGLELGADD 97
Query: 845 YVSKPFEAEQLYREV 859
YV+KPF +L V
Sbjct: 98 YVTKPFSNRELQARV 112
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF--DACFMDIQMP 780
+ +K+L+VDD+ V K+ + LK+ G V+ E G+ A E L +F D + I MP
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---SEFTPDLIVLXIMMP 57
Query: 781 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 840
MDGF K ++E E +R +P++ +TA + L
Sbjct: 58 VMDGFTVLKKLQEKEE-----WKR---------------IPVIVLTAKGGEEDESLALSL 97
Query: 841 GMDGYVSKPFEAEQLYREVSRFF 863
G + KPF Q EV
Sbjct: 98 GARKVMRKPFSPSQFIEEVKHLL 120
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 477 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 536
+ VED G GIP Q +F P +S GGTG+GLSI++ L+ + G+I F S P
Sbjct: 94 IDVEDNGPGIPPHLQDTLFYPM------VSGREGGTGLGLSIARNLIDQHSGKIEFTSWP 147
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 783
G K+L++D+N V+ V L G V V ++ ++ H+ FMD+ MP ++
Sbjct: 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV--SHEHKVVFMDVCMPGVE 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL-AMTADVIQATYEECLRSGM 842
++ +R E R +R P+L A++ + ++T E+C+ G+
Sbjct: 65 NYQIA--LRIHEKFTKQRHQR----------------PLLVALSGNTDKSTKEKCMSFGL 106
Query: 843 DGYVSKPFEAEQLYREVSRFFPP 865
DG + KP + + +S P
Sbjct: 107 DGVLLKPVSLDNIRDVLSDLLEP 129
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 572 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 625
S F G+K LV+D + V++ + LG +V VS +CL ++ K++ M
Sbjct: 3 SNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFM 56
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784
K+L+VDD++ ++ L R G V+ E G +A E L D MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
+ K +R ++R + +PI+ +TA+ +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFK---------------EIPIIMITAEGGKAEVITALKAGVNN 106
Query: 845 YVSKPFEAEQL 855
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784
+KILIVDD + + + G VV G++A E Q D + + +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-EAEQPDIIILXLMLPEIDG 60
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
E K IR+ VPIL ++A + L G D
Sbjct: 61 LEVAKTIRKTS-----------------------SVPILMLSAKDSEFDKVIGLELGADD 97
Query: 845 YVSKPFEAEQLYREV 859
YV+KPF +L V
Sbjct: 98 YVTKPFSNRELQARV 112
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784
K+L+VDD++ ++ L R G V+ E G +A E L D MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
+ K +R ++R + +PI+ +T + +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFK---------------EIPIIMITTEGGKAEVITALKAGVNN 106
Query: 845 YVSKPFEAEQL 855
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLD 332
A + A++SHEIR P+ G + ++ + L ++ Y R A ++I + L
Sbjct: 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLT 72
Query: 333 QAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFR 392
AK E V + ++D + L + D LA P ++IG+ +FR
Sbjct: 73 FAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLA-------PFSVIGEREKFR 125
Query: 393 QIITNLMGNSIKFTEKG---HIFVTV 415
Q + N+M N+I+ G ++V++
Sbjct: 126 QCLLNVMKNAIEAMPNGGTLQVYVSI 151
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL-LMPPHQFDACFMDIQMPEMDG 784
KILIVDD + ++ L+ G E T L ++ FD D MP M G
Sbjct: 14 KILIVDDFSTMRRIVKNLLRDLGFNNT-QEADDGLTALPMLKKGDFDFVVTDWNMPGMQG 72
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
+ K IR E E+ H+P+L +TA+ + E ++G++G
Sbjct: 73 IDLLKNIRADE----------ELK----------HLPVLMITAEAKREQIIEAAQAGVNG 112
Query: 845 YVSKPFEAEQLYREVSRFF 863
Y+ KPF A L ++ + F
Sbjct: 113 YIVKPFTAATLKEKLDKIF 131
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 782
+ +KIL+VDD + + L+R G V+ G++A + + D +D+ +P++
Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKK-AETEKPDLIVLDVMLPKL 60
Query: 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 842
DG E K +R+ + F PIL +TA + L G
Sbjct: 61 DGIEVCKQLRQQKLMF----------------------PILMLTAKDEEFDKVLGLELGA 98
Query: 843 DGYVSKPF 850
D Y++KPF
Sbjct: 99 DDYMTKPF 106
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDDN+ ++ LK G VE + + L + + D MP MD
Sbjct: 3 KFLVVDDNSTMRRITRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 60
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 61 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 100
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 101 GYVVKPFTAATLEEKLNKIF 120
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDDN+ ++ LK G VE + + L + + D MP MD
Sbjct: 3 KFLVVDDNSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 60
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L TA+ + ++G
Sbjct: 61 GLELLKTIRA----------DGAMSA----------LPVLMTTAEAKKENIIAAAQAGAS 100
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 101 GYVVKPFTAATLEEKLNKIF 120
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784
K+L+VDD++ ++ L R G V+ E G +A E L MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWNMPEMNG 66
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
+ K +R ++R + +PI+ +T + +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFK---------------EIPIIMITTEGGKAEVITALKAGVNN 106
Query: 845 YVSKPFEAEQL 855
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIICDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDGGTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQM 779
L+G++ILIV+D V + + GA V G A ELL P D DI M
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP---DLMICDIAM 61
Query: 780 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 839
P M+G ++ +EH N RG+ P+L ++A A + LR
Sbjct: 62 PRMNG------LKLLEHIRN----RGD------------QTPVLVISATENMADIAKALR 99
Query: 840 SGMDGYVSKPFEAEQLYREV 859
G++ + KP + RE+
Sbjct: 100 LGVEDVLLKPVKDLNRLREM 119
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DACFMDIQMPEMDG 784
+IL+VDD N+++ A L V G T L M D +D+ MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGP--TALAMAARDLPDIILLDVMMPGMDG 60
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
F + R+++ + R H+P++ +TA + + L SG
Sbjct: 61 F---TVCRKLKDDPTTR-----------------HIPVVLITALDGRGDRIQGLESGASD 100
Query: 845 YVSKPFEAEQLY---REVSRF 862
+++KP + L+ R ++RF
Sbjct: 101 FLTKPIDDVMLFARVRSLTRF 121
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
Query: 723 LGRKILIVDDN---NVNLK--VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 777
+G+++LIVDD + LK + AG + G A E +K EL + D MDI
Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----KPDIVTMDI 55
Query: 778 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 837
MPEM+G +A K I +++ N I+ +A QA E
Sbjct: 56 TMPEMNGIDAIKEIMKIDPN----------------------AKIIVCSAMGQQAMVIEA 93
Query: 838 LRSGMDGYVSKPFEAEQLYREVSR 861
+++G ++ KPF+ ++ +++
Sbjct: 94 IKAGAKDFIVKPFQPSRVVEALNK 117
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DACFMDIQMPEMDG 784
+IL+VDD N+++ A L V G T L M D +D+ MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGP--TALAMAARDLPDIILLDVMMPGMDG 61
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
F + R+++ + R H+P++ +TA + + L SG
Sbjct: 62 F---TVCRKLKDDPTTR-----------------HIPVVLITALDGRGDRIQGLESGASD 101
Query: 845 YVSKPFEAEQLY---REVSRF 862
+++KP + L+ R ++RF
Sbjct: 102 FLTKPIDDVMLFARVRSLTRF 122
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 8 KFLVVDDFSTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 65
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 66 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 105
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 106 GYVVKPFTAATLEEKLNKIF 125
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAHAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 32/143 (22%)
Query: 724 GRKILIVDDN---NVNLK--VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 778
G+++LIVDD + LK + AG + G A E +K EL + D MDI
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----KPDIVTMDIT 55
Query: 779 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 838
MPEM+G +A K I +++ N I+ +A QA E +
Sbjct: 56 MPEMNGIDAIKEIMKIDPN----------------------AKIIVCSAMGQQAMVIEAI 93
Query: 839 RSGMDGYVSKPFEAEQLYREVSR 861
++G ++ KPF+ ++ +++
Sbjct: 94 KAGAKDFIVKPFQPSRVVEALNK 116
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEADAENIKALAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 785
++L+V+DN + ++ G V E K+A + + H D +D+ +P+ DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60
Query: 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 845
+IR R R +VS+ PIL +TA E L +G D Y
Sbjct: 61 S---LIR--------RWRSNDVSL-----------PILVLTARESWQDKVEVLSAGADDY 98
Query: 846 VSKPFEAEQL 855
V+KPF E++
Sbjct: 99 VTKPFHIEEV 108
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENVIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 6 KFLVVDDQSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWKMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAYAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------AXXAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAQAKKENIIAAAQAGAS 107
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 785
KI +VDD+ LK + L++ G V+ + L F +D+ +P+ G+
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGR----VKTFLTGEDFLNDEEAFHVVVLDVXLPDYSGY 59
Query: 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 845
E + I+E R E V +L + +D + + +G D Y
Sbjct: 60 EICRXIKET---------RPET-----------WVILLTLLSD--DESVLKGFEAGADDY 97
Query: 846 VSKPFEAEQLYREVSRFF 863
V+KPF E L V RF
Sbjct: 98 VTKPFNPEILLARVKRFL 115
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAKAKKENIIAAAQAGAS 107
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 785
KI +VDD+ LK + L++ G V+ + L F +D+ +P+ G+
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGR----VKTFLTGEDFLNDEEAFHVVVLDVXLPDYSGY 59
Query: 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 845
E + I+E R E V +L + +D + + +G D Y
Sbjct: 60 EICRXIKET---------RPET-----------WVILLTLLSD--DESVLKGFEAGADDY 97
Query: 846 VSKPFEAEQLYREVSRFF 863
V+KPF E L V RF
Sbjct: 98 VTKPFNPEILLARVKRFL 115
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTALAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 107
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +T++ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTSEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAYAKKENIIAAAQAGAS 107
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTTEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTVEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 776 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 835
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 56 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 95
Query: 836 ECLRSGMDGYVSKPFEAEQLYREVSRFF 863
++G GYV KPF A L ++++ F
Sbjct: 96 AAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF L ++++ F
Sbjct: 104 GYVVKPFTPATLEEKLNKIF 123
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 776 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 835
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 56 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 95
Query: 836 ECLRSGMDGYVSKPFEAEQLYREVSRFF 863
++G GYV KPF A L ++++ F
Sbjct: 96 AAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 776 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 835
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 55 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 94
Query: 836 ECLRSGMDGYVSKPFEAEQLYREVSRFF 863
++G GYV KPF A L ++++ F
Sbjct: 95 AAAQAGASGYVVKPFTAATLEEKLNKIF 122
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF L ++++ F
Sbjct: 105 GYVVKPFTPATLEEKLNKIF 124
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784
++L+V+D + LK+ V VC + + L P FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEP--FDVVILDIXLPVHDG 61
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
+E K RE S + P+L +TA + L G D
Sbjct: 62 WEILKSXRE----------------------SGVNTPVLXLTALSDVEYRVKGLNXGADD 99
Query: 845 YVSKPFEAEQLYREV 859
Y+ KPF+ +L V
Sbjct: 100 YLPKPFDLRELIARV 114
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTMEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 776 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 835
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 58 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 97
Query: 836 ECLRSGMDGYVSKPFEAEQLYREVSRFF 863
++G GYV KPF A L ++++ F
Sbjct: 98 AAAQAGASGYVVKPFTAATLEEKLNKIF 125
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 474 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT-----GIGLSISKYLVGRMKG 528
+L + + D G G+PL R+F+ P+ GGT G GL IS+ +G
Sbjct: 283 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 342
Query: 529 EIGFVSIPNIGS 540
++ S+ G+
Sbjct: 343 DLQLFSMEGFGT 354
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 25/135 (18%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784
++L+V+D + LK+ V VC + + L P FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDG 61
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
+E K +RE S + P+L +TA + L G D
Sbjct: 62 WEILKSMRE----------------------SGVNTPVLMLTALSDVEYRVKGLNMGADD 99
Query: 845 YVSKPFEAEQLYREV 859
Y+ KPF+ +L V
Sbjct: 100 YLPKPFDLRELIARV 114
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 474 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT-----GIGLSISKYLVGRMKG 528
+L + + D G G+PL R+F+ P+ GGT G GL IS+ +G
Sbjct: 270 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 329
Query: 529 EIGFVSIPNIGS 540
++ S+ G+
Sbjct: 330 DLQLFSMEGFGT 341
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 64
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 36.6 bits (83), Expect = 0.061, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISAWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 36.6 bits (83), Expect = 0.069, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 460 GSTSPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSI 518
G K +S D+ + VSV ++G IP E + +IF+PF ++T GTG+GLSI
Sbjct: 64 GENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT-----TKTQ-GTGLGLSI 117
Query: 519 SKYLV 523
+ ++
Sbjct: 118 CRKII 122
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 343 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 402
+E FNL ++ +V LF K + ++ + +D + D R +Q++ NL+ N+
Sbjct: 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQVLINLVQNA 59
Query: 403 IKFT-EKGHIFVT 414
I+ T E G I +T
Sbjct: 60 IEATGENGKIKIT 72
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 36.2 bits (82), Expect = 0.085, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 786
+LI+DD+ V + AA L+ V+ G + ++ Q D D++ P++DG E
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQI-FESEQPDLVICDLRXPQIDGLE 66
Query: 787 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846
+ IR+ + PI+ ++ + + E LR G Y+
Sbjct: 67 LIRRIRQ----------------------TASETPIIVLSGAGVMSDAVEALRLGAADYL 104
Query: 847 SKPFE 851
KP E
Sbjct: 105 IKPLE 109
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 786
+LI+DD+ V + AA L+ V+ G + ++ Q D D++ P++DG E
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQI-FESEQPDLVICDLRXPQIDGLE 66
Query: 787 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846
+ IR+ + PI+ ++ + + E LR G Y+
Sbjct: 67 LIRRIRQ----------------------TASETPIIVLSGAGVXSDAVEALRLGAADYL 104
Query: 847 SKPFE 851
KP E
Sbjct: 105 IKPLE 109
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 474 NLIVSVEDTGQGIPLEAQSRIF------TPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 527
+L + + D G G+PL R+F P + P+ + G G GL IS+ +
Sbjct: 293 DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQ 352
Query: 528 GEIGFVSIPNIGS 540
G++ S+ +G+
Sbjct: 353 GDLKLYSMEGVGT 365
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 35.8 bits (81), Expect = 0.097, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 781
L +KILIV+D+ K A L +YG V G+ A E + D MDI++ E
Sbjct: 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGE 62
Query: 782 -MDGFEATKIIREM 794
MDG + I+++
Sbjct: 63 GMDGVQTALAIQQI 76
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 479 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 528
VED G GI E + +F PF++ G S +RT GTG+GL+I + +V G
Sbjct: 82 VEDDGPGIAPEQRKHLFQPFVR-GDS-ARTISGTGLGLAIVQRIVDNHNG 129
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 786
+L+++D+ V + L G V ERGK+A +LL H F+ + + +P+++G E
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH-FNVVLLXLLLPDVNGLE 61
Query: 787 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846
K I+E R E + + AM + C+ ++ +
Sbjct: 62 ILKWIKE---------RSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTI 112
Query: 847 SKPFEAEQLYRE 858
+K E +L +E
Sbjct: 113 NKAIEHRKLRKE 124
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 716 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775
MSL+ ++IL+VDD+ LKR V G A L F+ M
Sbjct: 1 MSLKQ---SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL---STFEPAIM 54
Query: 776 --DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833
D+ MP++DG + +IR + N V+N P + + + + +A
Sbjct: 55 TLDLSMPKLDGLD---VIRSLRQN----------------KVAN--QPKILVVSGLDKAK 93
Query: 834 YEECLRSGMDGYVSKPFEAEQL 855
++ + G D Y+ KPF+ + L
Sbjct: 94 LQQAVTEGADDYLEKPFDNDAL 115
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPE 781
++IL+VDD+ ++ L+ G + G +A L P D +D+ +P
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP----DLVLLDLMLPG 61
Query: 782 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 841
M+G + +++R ++ VPI+ +TA L SG
Sbjct: 62 MNGIDVCRVLR-----------------------ADSGVPIVMLTAKTDTVDVVLGLESG 98
Query: 842 MDGYVSKPFEAEQ 854
D Y+ KPF+ ++
Sbjct: 99 ADDYIMKPFKPKE 111
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 474 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLSISKYLVGRMK 527
+L + + D G G+PL R+F+ P S + G G GL IS+ +
Sbjct: 269 DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328
Query: 528 GEIGFVSIPNIGS 540
G++ S+ G+
Sbjct: 329 GDLNLYSLSGYGT 341
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 781
++ KILIVDD + + + G G +A +++ D +D+++P
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 782 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 837
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 60 MDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 95
Query: 838 LRSGMDGYVSKPFEAEQLYREVSRFFP 864
G + +KPF+ +++ V ++ P
Sbjct: 96 --LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 474 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLSISKYLVGRMK 527
+L + + D G G+PL R+F+ P S + G G GL IS+ +
Sbjct: 269 DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328
Query: 528 GEIGFVSIPNIGS 540
G++ S+ G+
Sbjct: 329 GDLNLYSLSGYGT 341
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 29/143 (20%)
Query: 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEMD 783
R++LI +D + A L+ G +V G++A EL H+ D MD++MP D
Sbjct: 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVEL-AELHKPDLVIMDVKMPRRD 72
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G +A A E S PI+ +TA + E +G
Sbjct: 73 GIDA-----------------------ASEIASKRIAPIVVLTAFSQRDLVERARDAGAM 109
Query: 844 GYVSKPFEAEQLYR----EVSRF 862
Y+ KPF L VSRF
Sbjct: 110 AYLVKPFSISDLIPAIELAVSRF 132
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 26/141 (18%)
Query: 727 ILIVDDNNVNLKVAAAGLKRY-GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 785
+L+++D VA LK+ +++ GK+A +L D D+QM MDG
Sbjct: 6 VLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGL 65
Query: 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI--QATYE--ECLRSG 841
+R +S H IL+ D I QAT ECL
Sbjct: 66 AF--------------LRHASLS-------GKVHSVILSSEVDPILRQATISMIECLGLN 104
Query: 842 MDGYVSKPFEAEQLYREVSRF 862
G + KPF E++ ++R+
Sbjct: 105 FLGDLGKPFSLERITALLTRY 125
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 781
++ KILIVDD + + G G +A +++ D +D+++P
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 782 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 837
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 60 MDGIEIAKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 95
Query: 838 LRSGMDGYVSKPFEAEQLYREVSRFFP 864
G + +KPF+ +++ V ++ P
Sbjct: 96 --LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 474 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEI 530
+L + VED G GIPL + IF G + G G+GL++++ + + +G+I
Sbjct: 74 HLYIVVEDDGPGIPLSKREVIFDR----GQRVDTLRPGQGVGLAVAREITEQYEGKI 126
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 474 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLSISKYLVGRMK 527
+L V + D G G+PL R+F P S + G G GL IS+ +
Sbjct: 282 DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQ 341
Query: 528 GEIGFVSIPNIGS 540
G++ S+ G+
Sbjct: 342 GDLKLYSLEGYGT 354
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 781
++ KILIVDD + + G G +A +++ D +D+++P
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 59
Query: 782 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 837
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 60 MDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 95
Query: 838 LRSGMDGYVSKPFEAEQLYREVSRFFP 864
G + +KPF+ +++ V ++ P
Sbjct: 96 --LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 781
++ KILIVDD + + G G +A +++ D +D+++P
Sbjct: 3 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPG 61
Query: 782 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 837
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 62 MDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 97
Query: 838 LRSGMDGYVSKPFEAEQLYREVSRFFP 864
G + +KPF+ +++ V ++ P
Sbjct: 98 --LGALTHFAKPFDIDEIRDAVKKYLP 122
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 783
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 844 GYVSKPFEAEQLYREVSRFF 863
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC----VERGKKATELLMPPHQFDACFMDI 777
L +++L+V+DN ++ + L R + C V+ G KA + ++D +DI
Sbjct: 3 LRSKRVLVVEDNPDDIALIRRVLDR--KDIHCQLEFVDNGAKALYQVQQA-KYDLIILDI 59
Query: 778 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 837
+P +GFE +R+ +N H PI+ +T +V ++C
Sbjct: 60 GLPIANGFEVXSAVRKPG--------------------ANQHTPIVILTDNVSDDRAKQC 99
Query: 838 LRSGMDGYVSK 848
+G V K
Sbjct: 100 XAAGASSVVDK 110
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 31/143 (21%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 785
KILIVDD + + + G G +A +++ D +D+++P MDG
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLDMKIPGMDGI 61
Query: 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEECLRSG 841
E K ++ ++ N + ++ MTA D+IQ + E G
Sbjct: 62 EILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE----LG 95
Query: 842 MDGYVSKPFEAEQLYREVSRFFP 864
+ +KPF+ +++ V ++ P
Sbjct: 96 ALTHFAKPFDIDEIRDAVKKYLP 118
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 784
IL+VDD+ + V L+R G + G++ E L PP D +DI DG
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP---DLVLLDIXXEPXDG 62
Query: 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844
+E + I+ + + +P+L +TA + S ++
Sbjct: 63 WETLERIKT--------------------DPATRDIPVLXLTAKPLTPEEANEYGSYIED 102
Query: 845 YVSKPFEAEQLYREV 859
Y+ KP QLY +
Sbjct: 103 YILKPTTHHQLYEAI 117
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 25/131 (19%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 785
++L+VDD +++ + LK G V G +A + DA +D+ P DGF
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP-DAVILDVXXPGXDGF 83
Query: 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA-DVIQATYEECLRSGMDG 844
+ +R P L +TA D +Q L G D
Sbjct: 84 GVLRRLR----------------------ADGIDAPALFLTARDSLQDKIAG-LTLGGDD 120
Query: 845 YVSKPFEAEQL 855
YV+KPF E++
Sbjct: 121 YVTKPFSLEEV 131
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA---CFMDIQMPEM 782
++L+VDD+ + A L++ ++ V A E L Q A +D PE+
Sbjct: 126 EVLVVDDSRTSRHRTXAQLRK---QLLQVHEASHAREALATLEQHPAIRLVLVDYYXPEI 182
Query: 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 842
DG + +R E S + I+ ++ + L+ G
Sbjct: 183 DGISLVRXLR--------------------ERYSKQQLAIIGISVSDKRGLSARYLKQGA 222
Query: 843 DGYVSKPFEAEQLYREVS 860
+ ++++PFE E+L VS
Sbjct: 223 NDFLNQPFEPEELQCRVS 240
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 726 KILIVDDNNVNLKV------AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 779
++L+VDD+ V + +K G A +E +KA EL + D MDI+M
Sbjct: 27 RVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-----KPDVITMDIEM 81
Query: 780 PEMDGFEATKII 791
P ++G EA K+I
Sbjct: 82 PNLNGIEALKLI 93
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 785
+ILIV+D+ + L+ G V G++A L D D+ MPEMDG+
Sbjct: 9 EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP-DLIISDVLMPEMDGY 67
Query: 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 845
+ + +G+ + + + IL+ DV+++ L G D +
Sbjct: 68 ALCRWL------------KGQPDL---RTIPVILLTILSDPRDVVRS-----LECGADDF 107
Query: 846 VSKPFEAEQLYREVSRFF 863
++KP + L V R
Sbjct: 108 ITKPCKDVVLASHVKRLL 125
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 8 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 62
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 63 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 106
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLA 131
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 781
++ KILIVDD + + + G G +A +++ D + +++P
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP-DLVLLXMKIPG 59
Query: 782 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEEC 837
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 60 MDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE-- 95
Query: 838 LRSGMDGYVSKPFEAEQLYREVSRFFP 864
G + +KPF+ +++ V ++ P
Sbjct: 96 --LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 23/93 (24%)
Query: 774 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833
+D+ +P+ G + K+++E H RR P++ +T Q
Sbjct: 64 LLDLNLPDXTGIDILKLVKENPHT-----RRS---------------PVVILTTTDDQRE 103
Query: 834 YEECLRSGMDGYVSKPFEAEQL---YREVSRFF 863
+ C G + Y++KP E R++ FF
Sbjct: 104 IQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 782
L KILI+D + N + L+ G ++ ++A + +++D F++I + +
Sbjct: 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-NKYDLIFLEIILSDG 61
Query: 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 842
DG+ K IR NV+ PI+ T + L SG
Sbjct: 62 DGWTLCKKIR---------------------NVTT--CPIVYXTYINEDQSILNALNSGG 98
Query: 843 DGYVSKPFEAEQLYREV 859
D Y+ KP E LY +V
Sbjct: 99 DDYLIKPLNLEILYAKV 115
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 8 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 62
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 63 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 106
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLA 131
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 22/75 (29%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 782
+G+++LIVDD A G + VE+ K+ L P D MDI MPEM
Sbjct: 1 MGKRVLIVDD-------ATNGRE-------AVEKYKE----LKP----DIVTMDITMPEM 38
Query: 783 DGFEATKIIREMEHN 797
+G +A K I +++ N
Sbjct: 39 NGIDAIKEIMKIDPN 53
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 8 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 62
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 63 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 106
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLA 131
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 22/89 (24%)
Query: 771 DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 830
DA +DI MP +DG +R M+++ VP+ ++A
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDND----------------------VPVCVLSARSS 90
Query: 831 QATYEECLRSGMDGYVSKPFEAEQLYREV 859
L +G D Y+ KPF +L V
Sbjct: 91 VDDRVAGLEAGADDYLVKPFVLAELVARV 119
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 773 CFMDIQMPEMDGFEATKIIREMEHNFNNRIRR--GEVSIEAY 812
+ D+ M G +AT+++R +E N NNR + GE +IEA+
Sbjct: 99 VYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAW 140
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 776 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 835
D P DG E K IR G S +P+L +TA+ +
Sbjct: 56 DWNXPNXDGLELLKTIRA----------DGAXSA----------LPVLXVTAEAKKENII 95
Query: 836 ECLRSGMDGYVSKPFEAEQLYREVSRFF 863
++G G+V KPF A L ++++ F
Sbjct: 96 AAAQAGASGWVVKPFTAATLEEKLNKIF 123
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 62/205 (30%)
Query: 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 412
+LD+++S + Q KGV +++ IS + + +G+ F +++ N++ N+ K+ + F
Sbjct: 14 LLDNLISALNKVYQRKGVNISMDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE---F 68
Query: 413 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 472
V + S++ T D H +
Sbjct: 69 VEI-----------------SARQT------DDHLHIF---------------------- 83
Query: 473 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 532
VED G GIP +S +F G G G+GL++++ + + G+I
Sbjct: 84 ------VEDDGPGIPHSKRSLVFDR----GQRADTLRPGQGVGLAVAREITEQYAGQI-- 131
Query: 533 VSIPNIGSTFTFTAVFGNGSSTSNE 557
++ ++ VFG T E
Sbjct: 132 IASDSLLGGARMEVVFGRQHPTQKE 156
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 782
+ R+IL+V+D ++ L++ G V E A L P D +D +P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLP-- 57
Query: 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 842
G + I+ ++ R +P++ +TA + L +G
Sbjct: 58 -GGSGIQFIKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGA 99
Query: 843 DGYVSKPFEAEQL 855
D Y++KPF ++L
Sbjct: 100 DDYITKPFSPKEL 112
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 782
+ R+IL+V+D ++ L++ G V E A L P D +D +P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLP-- 57
Query: 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 842
G + I+ ++ R +P++ +TA + L +G
Sbjct: 58 -GGSGIQFIKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGA 99
Query: 843 DGYVSKPFEAEQL 855
D Y++KPF ++L
Sbjct: 100 DDYITKPFSPKEL 112
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 726 KILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMD 783
K+LIVDD + + L++ G + G++ +++ PH D MP+MD
Sbjct: 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHL--VISDFNMPKMD 65
Query: 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843
G + +R N + + +TA +A ++ G +
Sbjct: 66 GLGLLQAVR--------------------ANPATKKAAFIILTAQGDRALVQKAAALGAN 105
Query: 844 GYVSKPFEAEQLYREVSRFF 863
++KPF E++ + F
Sbjct: 106 NVLAKPFTIEKMKAAIEAVF 125
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 786
+L+++D+ V + L G V ERGK+A +LL H F+ +D+ +P+++G E
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH-FNVVLLDLLLPDVNGLE 61
Query: 787 ATKIIRE 793
K I+E
Sbjct: 62 ILKWIKE 68
>pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob
pdb|2XSX|B Chain B, Crystal Structure Of Human Beta Enolase Enob
Length = 435
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 320 GKALVSLINEVLDQAKVESGKLELEAV----SFNLRAILDDVLSLFSGKSQDKGVELAVY 375
G AL+ V DQ KV+ +EL+ F AIL L++ + +KGV L +
Sbjct: 75 GPALLQKKLSVADQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRH 134
Query: 376 ISDRVPETLIGDP 388
I+D L G+P
Sbjct: 135 IAD-----LAGNP 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,911,795
Number of Sequences: 62578
Number of extensions: 966949
Number of successful extensions: 2481
Number of sequences better than 100.0: 146
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 2277
Number of HSP's gapped (non-prelim): 164
length of query: 871
length of database: 14,973,337
effective HSP length: 107
effective length of query: 764
effective length of database: 8,277,491
effective search space: 6324003124
effective search space used: 6324003124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)