Query 002879
Match_columns 871
No_of_seqs 727 out of 4480
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:38:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11107 hybrid sensory histid 100.0 6.9E-62 1.5E-66 611.8 68.9 505 265-865 283-787 (919)
2 PRK10841 hybrid sensory kinase 100.0 4.7E-61 1E-65 595.0 62.1 488 259-865 431-919 (924)
3 KOG0519 Sensory transduction h 100.0 2E-63 4.4E-68 600.1 16.0 767 63-864 4-785 (786)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 4.9E-56 1.1E-60 561.6 55.7 369 265-864 454-822 (968)
5 PRK11091 aerobic respiration c 100.0 3E-56 6.4E-61 550.3 49.1 371 265-865 273-645 (779)
6 PRK15347 two component system 100.0 3.7E-55 8E-60 550.9 59.3 427 261-863 384-810 (921)
7 PRK11466 hybrid sensory histid 100.0 2.8E-54 6.1E-59 542.3 51.6 370 260-865 429-800 (914)
8 PRK09959 hybrid sensory histid 100.0 1.2E-49 2.5E-54 513.4 51.3 382 256-864 693-1075(1197)
9 PRK10618 phosphotransfer inter 100.0 3.3E-47 7.3E-52 465.0 45.9 240 259-549 434-673 (894)
10 PRK13837 two-component VirA-li 100.0 2.1E-44 4.5E-49 445.8 50.7 364 273-865 448-814 (828)
11 COG5002 VicK Signal transducti 100.0 3.7E-42 8.1E-47 355.5 17.4 226 271-550 221-450 (459)
12 PRK13557 histidine kinase; Pro 100.0 9.1E-38 2E-42 369.3 46.3 368 274-866 162-536 (540)
13 PRK09303 adaptive-response sen 100.0 2.6E-37 5.7E-42 349.6 33.4 244 252-550 128-379 (380)
14 COG2205 KdpD Osmosensitive K+ 100.0 1.1E-37 2.4E-42 355.4 28.5 225 269-551 654-882 (890)
15 PRK11006 phoR phosphate regulo 100.0 7.5E-34 1.6E-38 327.2 29.1 221 273-549 202-424 (430)
16 PRK10604 sensor protein RstB; 100.0 8.4E-33 1.8E-37 318.6 35.7 229 260-550 197-425 (433)
17 PRK10815 sensor protein PhoQ; 100.0 8.3E-32 1.8E-36 313.6 36.7 221 267-549 258-479 (485)
18 TIGR02938 nifL_nitrog nitrogen 100.0 9.4E-32 2E-36 313.6 31.1 215 274-548 275-494 (494)
19 PRK10549 signal transduction h 100.0 4.6E-31 1E-35 306.9 35.7 236 259-550 224-460 (466)
20 PRK10490 sensor protein KdpD; 100.0 6.3E-31 1.4E-35 325.2 32.6 223 270-550 659-884 (895)
21 PRK10364 sensor protein ZraS; 100.0 3.3E-30 7.2E-35 299.2 36.1 213 274-550 236-450 (457)
22 PRK10755 sensor protein BasS/P 100.0 3.6E-30 7.9E-35 289.0 34.5 227 260-549 122-351 (356)
23 PRK09835 sensor kinase CusS; P 100.0 8.9E-30 1.9E-34 297.3 36.9 232 260-548 247-480 (482)
24 TIGR03785 marine_sort_HK prote 100.0 7.1E-30 1.5E-34 308.9 36.3 231 261-547 471-703 (703)
25 COG4251 Bacteriophytochrome (l 100.0 1E-30 2.3E-35 289.2 25.4 235 259-552 508-745 (750)
26 TIGR01386 cztS_silS_copS heavy 100.0 9.2E-30 2E-34 294.7 34.8 231 259-547 225-457 (457)
27 PRK09470 cpxA two-component se 100.0 2.3E-29 5.1E-34 292.0 36.9 232 260-550 228-459 (461)
28 COG3852 NtrB Signal transducti 100.0 3.8E-30 8.2E-35 263.7 25.0 222 273-550 130-356 (363)
29 PRK09467 envZ osmolarity senso 100.0 5.8E-29 1.3E-33 286.8 33.9 222 259-549 213-434 (435)
30 PRK10337 sensor protein QseC; 100.0 7.2E-29 1.6E-33 287.3 34.5 226 260-546 222-449 (449)
31 COG4191 Signal transduction hi 100.0 6E-28 1.3E-32 268.8 38.9 211 276-548 385-601 (603)
32 TIGR02966 phoR_proteo phosphat 100.0 4.4E-29 9.5E-34 275.7 28.2 218 274-546 113-333 (333)
33 PRK11100 sensory histidine kin 100.0 1.1E-27 2.4E-32 278.6 35.3 218 274-548 255-473 (475)
34 PRK11073 glnL nitrogen regulat 100.0 4.7E-28 1E-32 270.8 27.7 217 274-548 129-347 (348)
35 COG0642 BaeS Signal transducti 100.0 2.9E-26 6.2E-31 251.1 31.1 217 274-550 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 3.4E-26 7.4E-31 273.5 29.9 214 274-550 389-603 (607)
37 PRK13560 hypothetical protein; 99.9 9.6E-26 2.1E-30 279.8 25.3 213 259-550 589-805 (807)
38 TIGR02916 PEP_his_kin putative 99.9 7.3E-25 1.6E-29 266.2 28.6 203 274-547 474-679 (679)
39 PF03924 CHASE: CHASE domain; 99.9 1.6E-24 3.5E-29 221.8 13.7 179 2-188 9-193 (193)
40 PRK11086 sensory histidine kin 99.9 3.1E-23 6.7E-28 245.8 23.5 195 275-550 339-537 (542)
41 PRK11644 sensory histidine kin 99.9 3.9E-22 8.4E-27 232.7 30.4 195 272-548 299-494 (495)
42 PRK15053 dpiB sensor histidine 99.9 4E-22 8.7E-27 236.8 26.9 198 277-550 340-541 (545)
43 COG5000 NtrY Signal transducti 99.9 1.8E-22 4E-27 223.8 21.3 211 274-548 485-708 (712)
44 COG4192 Signal transduction hi 99.9 2.9E-20 6.4E-25 198.9 25.3 209 277-548 453-666 (673)
45 COG0745 OmpR Response regulato 99.8 1.8E-20 3.9E-25 195.6 16.8 118 726-866 2-119 (229)
46 PRK13559 hypothetical protein; 99.8 1.3E-19 2.8E-24 203.8 22.0 187 273-549 168-360 (361)
47 PF02518 HATPase_c: Histidine 99.8 4.1E-20 8.9E-25 171.5 12.7 109 386-548 1-110 (111)
48 PRK10935 nitrate/nitrite senso 99.8 1.2E-17 2.7E-22 199.2 26.7 194 277-550 362-561 (565)
49 COG3290 CitA Signal transducti 99.8 5.6E-17 1.2E-21 180.8 23.5 194 277-550 335-533 (537)
50 PRK10600 nitrate/nitrite senso 99.7 5.8E-16 1.3E-20 184.9 29.7 182 286-549 373-557 (569)
51 PRK09581 pleD response regulat 99.7 1.8E-16 3.8E-21 183.6 24.2 256 578-861 4-270 (457)
52 COG2204 AtoC Response regulato 99.7 2.1E-17 4.6E-22 185.0 15.2 117 725-864 5-121 (464)
53 COG3437 Response regulator con 99.7 1.4E-17 3.1E-22 176.8 12.3 118 725-862 15-132 (360)
54 PF00072 Response_reg: Respons 99.7 4.8E-17 1E-21 150.5 14.4 111 727-860 1-112 (112)
55 COG0784 CheY FOG: CheY-like re 99.7 1.4E-16 3.1E-21 151.3 15.8 119 724-865 5-126 (130)
56 COG4753 Response regulator con 99.7 3.7E-17 8.1E-22 182.4 13.4 116 725-863 2-120 (475)
57 COG3706 PleD Response regulato 99.7 1.8E-15 3.8E-20 168.3 19.0 123 723-866 131-253 (435)
58 COG4566 TtrR Response regulato 99.7 8.3E-16 1.8E-20 149.0 13.5 117 725-864 5-121 (202)
59 COG4565 CitB Response regulato 99.7 7.4E-16 1.6E-20 152.3 13.3 116 726-864 2-119 (224)
60 PRK10547 chemotaxis protein Ch 99.7 9.6E-15 2.1E-19 172.9 25.0 146 348-550 343-525 (670)
61 COG2197 CitB Response regulato 99.7 1.4E-15 3E-20 157.4 15.5 117 726-865 2-120 (211)
62 PLN03029 type-a response regul 99.6 6.7E-15 1.5E-19 153.9 15.4 118 724-861 8-144 (222)
63 PRK10046 dpiA two-component re 99.6 3.7E-14 8.1E-19 148.8 16.5 115 725-862 5-121 (225)
64 PRK10529 DNA-binding transcrip 99.6 6.2E-14 1.3E-18 146.3 16.9 116 725-864 2-117 (225)
65 PRK04184 DNA topoisomerase VI 99.6 5.6E-14 1.2E-18 160.8 17.2 117 384-550 30-154 (535)
66 PRK11173 two-component respons 99.5 8.6E-14 1.9E-18 146.8 16.5 116 725-864 4-119 (237)
67 PRK10816 DNA-binding transcrip 99.5 1.5E-13 3.1E-18 143.4 16.8 117 726-865 2-118 (223)
68 PRK09836 DNA-binding transcrip 99.5 1.8E-13 3.8E-18 143.2 17.0 116 726-864 2-117 (227)
69 PRK09468 ompR osmolarity respo 99.5 2.4E-13 5.2E-18 143.4 17.4 119 724-865 5-123 (239)
70 PRK10766 DNA-binding transcrip 99.5 1.9E-13 4.2E-18 142.1 16.2 115 725-863 3-117 (221)
71 PRK10643 DNA-binding transcrip 99.5 2.3E-13 4.9E-18 141.2 16.6 116 726-864 2-117 (222)
72 COG3614 Predicted periplasmic 99.5 7.3E-14 1.6E-18 145.4 12.5 152 3-157 86-247 (348)
73 PRK10430 DNA-binding transcrip 99.5 1.8E-13 3.8E-18 145.1 15.8 114 726-861 3-119 (239)
74 COG3947 Response regulator con 99.5 3.1E-14 6.8E-19 145.9 8.9 114 726-864 2-115 (361)
75 PRK10701 DNA-binding transcrip 99.5 2.9E-13 6.2E-18 143.0 16.2 115 726-864 3-117 (240)
76 PRK10161 transcriptional regul 99.5 3.4E-13 7.4E-18 141.2 16.4 119 725-864 3-121 (229)
77 PRK13856 two-component respons 99.5 2.9E-13 6.2E-18 143.4 15.9 115 726-864 3-118 (241)
78 PRK10955 DNA-binding transcrip 99.5 3.8E-13 8.2E-18 140.8 16.6 114 726-864 3-116 (232)
79 TIGR02154 PhoB phosphate regul 99.5 4.2E-13 9.1E-18 139.5 16.3 120 725-865 3-122 (226)
80 PRK11517 transcriptional regul 99.5 6.5E-13 1.4E-17 138.2 17.0 116 726-865 2-117 (223)
81 PRK10336 DNA-binding transcrip 99.5 5.5E-13 1.2E-17 138.2 16.2 116 726-864 2-117 (219)
82 TIGR03787 marine_sort_RR prote 99.5 4.9E-13 1.1E-17 139.7 15.9 117 725-864 1-119 (227)
83 TIGR02875 spore_0_A sporulatio 99.5 5.3E-13 1.1E-17 143.4 16.3 119 725-864 3-123 (262)
84 smart00387 HATPase_c Histidine 99.5 7.8E-13 1.7E-17 120.5 14.4 109 386-548 1-110 (111)
85 TIGR01387 cztR_silR_copR heavy 99.5 1.2E-12 2.6E-17 135.4 16.5 116 727-865 1-116 (218)
86 COG4567 Response regulator con 99.5 8.8E-13 1.9E-17 122.7 13.4 116 725-863 10-125 (182)
87 PRK11083 DNA-binding response 99.4 1.8E-12 3.8E-17 135.1 16.9 117 725-864 4-120 (228)
88 PRK10840 transcriptional regul 99.4 1.2E-12 2.7E-17 136.3 15.4 117 725-864 4-125 (216)
89 CHL00148 orf27 Ycf27; Reviewed 99.4 2.7E-12 5.9E-17 135.1 16.3 116 725-864 7-122 (240)
90 PRK10923 glnG nitrogen regulat 99.4 2E-12 4.3E-17 150.9 16.4 116 725-863 4-119 (469)
91 PRK14084 two-component respons 99.4 2.6E-12 5.7E-17 136.5 15.9 113 726-863 2-116 (246)
92 PRK11361 acetoacetate metaboli 99.4 2.6E-12 5.6E-17 149.5 16.9 118 724-864 4-121 (457)
93 PRK09958 DNA-binding transcrip 99.4 3.5E-12 7.6E-17 130.8 16.0 116 726-864 2-118 (204)
94 PRK15115 response regulator Gl 99.4 2.2E-12 4.7E-17 149.5 15.3 117 725-864 6-122 (444)
95 PRK09483 response regulator; P 99.4 4.8E-12 1E-16 131.1 15.5 117 726-865 3-121 (217)
96 TIGR02915 PEP_resp_reg putativ 99.4 2.6E-12 5.7E-17 148.9 14.9 113 727-864 1-118 (445)
97 PRK12555 chemotaxis-specific m 99.4 3.6E-12 7.8E-17 142.1 15.2 114 726-863 2-128 (337)
98 PF00512 HisKA: His Kinase A ( 99.4 2.1E-12 4.6E-17 108.5 9.8 66 274-339 1-68 (68)
99 PRK10365 transcriptional regul 99.4 2.6E-12 5.6E-17 148.8 14.1 116 725-863 6-121 (441)
100 PRK10360 DNA-binding transcrip 99.4 6.9E-12 1.5E-16 127.8 15.3 114 726-865 3-118 (196)
101 PRK11697 putative two-componen 99.4 4.8E-12 1E-16 133.7 14.6 114 725-864 2-117 (238)
102 PRK09935 transcriptional regul 99.4 8.7E-12 1.9E-16 128.2 16.0 118 725-865 4-123 (210)
103 TIGR01818 ntrC nitrogen regula 99.4 4.2E-12 9.1E-17 148.0 14.8 114 727-863 1-114 (463)
104 PRK10710 DNA-binding transcrip 99.4 1.3E-11 2.7E-16 130.0 17.1 116 725-864 11-126 (240)
105 PRK15479 transcriptional regul 99.3 1.9E-11 4.1E-16 126.7 16.3 116 726-864 2-117 (221)
106 KOG0519 Sensory transduction h 99.3 7.1E-12 1.5E-16 152.9 14.9 401 264-700 375-784 (786)
107 TIGR01052 top6b DNA topoisomer 99.3 5.5E-12 1.2E-16 143.1 12.9 111 384-547 22-139 (488)
108 PRK14868 DNA topoisomerase VI 99.3 8.7E-12 1.9E-16 145.2 14.6 126 366-546 21-159 (795)
109 PRK10100 DNA-binding transcrip 99.3 1.6E-11 3.5E-16 127.5 14.4 114 724-864 10-126 (216)
110 PRK00742 chemotaxis-specific m 99.3 2.3E-11 4.9E-16 136.7 16.2 114 725-862 4-130 (354)
111 PRK11475 DNA-binding transcrip 99.3 1.9E-11 4.2E-16 126.0 13.5 106 737-865 3-115 (207)
112 PRK09390 fixJ response regulat 99.3 3.6E-11 7.8E-16 122.1 14.2 117 725-864 4-120 (202)
113 COG2201 CheB Chemotaxis respon 99.3 1.8E-11 3.9E-16 132.4 12.1 102 726-851 3-108 (350)
114 cd00075 HATPase_c Histidine ki 99.3 3.7E-11 8E-16 107.6 12.3 101 391-546 1-103 (103)
115 PRK14867 DNA topoisomerase VI 99.3 2.5E-11 5.3E-16 141.7 13.5 114 385-550 28-151 (659)
116 PRK09581 pleD response regulat 99.3 6.8E-11 1.5E-15 136.9 16.7 117 726-863 4-120 (457)
117 COG3707 AmiR Response regulato 99.3 2.9E-11 6.3E-16 118.7 11.1 112 725-860 6-118 (194)
118 PRK13435 response regulator; P 99.3 1E-10 2.2E-15 113.6 15.0 114 724-864 5-120 (145)
119 TIGR01925 spIIAB anti-sigma F 99.2 5.4E-11 1.2E-15 114.7 12.4 98 386-546 35-136 (137)
120 PRK13558 bacterio-opsin activa 99.2 7.8E-11 1.7E-15 143.7 14.3 116 725-863 8-125 (665)
121 PRK10651 transcriptional regul 99.2 2.5E-10 5.4E-15 117.6 15.9 118 725-865 7-126 (216)
122 PRK10610 chemotaxis regulatory 99.2 6E-10 1.3E-14 103.2 16.3 119 725-864 6-125 (129)
123 PRK10403 transcriptional regul 99.2 3.3E-10 7.1E-15 116.5 15.9 117 725-864 7-125 (215)
124 PRK15369 two component system 99.2 3.3E-10 7E-15 115.7 15.7 118 725-865 4-123 (211)
125 PRK15411 rcsA colanic acid cap 99.2 3.6E-10 7.8E-15 116.9 14.5 115 726-864 2-122 (207)
126 COG0643 CheA Chemotaxis protei 99.2 4.6E-09 1E-13 125.5 25.1 142 350-550 392-575 (716)
127 PRK03660 anti-sigma F factor; 99.2 3.6E-10 7.9E-15 110.1 13.1 101 387-550 36-140 (146)
128 PRK09191 two-component respons 99.1 7.7E-10 1.7E-14 118.5 15.1 115 725-865 138-254 (261)
129 PRK10693 response regulator of 99.1 6.9E-10 1.5E-14 121.8 11.9 89 753-864 2-91 (303)
130 COG3851 UhpB Signal transducti 99.0 1.3E-07 2.9E-12 100.1 26.9 190 273-547 301-493 (497)
131 COG4585 Signal transduction hi 99.0 1.4E-07 3E-12 106.5 28.9 123 354-548 243-365 (365)
132 cd00156 REC Signal receiver do 99.0 4.3E-09 9.4E-14 93.3 13.0 112 728-862 1-112 (113)
133 COG3920 Signal transduction hi 99.0 3.2E-07 6.9E-12 95.5 26.6 194 274-550 18-217 (221)
134 COG3850 NarQ Signal transducti 98.9 9.4E-07 2E-11 99.0 26.5 184 280-547 374-567 (574)
135 PRK04069 serine-protein kinase 98.8 4.9E-08 1.1E-12 96.9 13.9 103 387-550 39-145 (161)
136 PRK15029 arginine decarboxylas 98.8 2.2E-08 4.9E-13 120.1 12.6 106 726-854 2-121 (755)
137 COG2972 Predicted signal trans 98.8 3E-06 6.4E-11 98.6 28.9 65 474-549 386-453 (456)
138 COG3279 LytT Response regulato 98.7 4.4E-08 9.6E-13 103.7 10.1 112 726-862 3-116 (244)
139 COG3275 LytS Putative regulato 98.7 2.7E-06 5.9E-11 93.8 22.4 129 346-550 415-553 (557)
140 smart00388 HisKA His Kinase A 98.6 1.9E-07 4E-12 76.6 8.6 64 275-338 2-65 (66)
141 TIGR01924 rsbW_low_gc serine-p 98.6 6E-07 1.3E-11 88.8 12.7 101 388-549 40-144 (159)
142 COG4564 Signal transduction hi 98.5 4.8E-05 1E-09 80.2 24.6 184 285-549 261-448 (459)
143 KOG0787 Dehydrogenase kinase [ 98.4 2.8E-05 6.1E-10 83.6 20.9 183 310-548 174-380 (414)
144 PF14501 HATPase_c_5: GHKL dom 98.4 4.6E-06 1E-10 75.7 12.6 94 387-548 2-99 (100)
145 PRK11107 hybrid sensory histid 98.3 4.9E-06 1.1E-10 105.5 15.0 118 721-863 533-650 (919)
146 cd00082 HisKA Histidine Kinase 98.2 7.5E-06 1.6E-10 66.4 8.1 62 274-335 3-65 (65)
147 COG3706 PleD Response regulato 98.2 1.8E-06 4E-11 96.9 5.3 91 749-864 13-103 (435)
148 COG3452 Predicted periplasmic 98.1 2.8E-05 6.1E-10 79.8 11.0 82 69-159 119-200 (297)
149 TIGR00585 mutl DNA mismatch re 98.0 3E-05 6.5E-10 85.5 12.0 97 389-545 21-125 (312)
150 PF13581 HATPase_c_2: Histidin 97.8 0.00023 4.9E-09 67.2 11.1 93 387-545 28-124 (125)
151 COG1389 DNA topoisomerase VI, 97.7 0.00014 3E-09 80.2 9.2 111 387-549 33-151 (538)
152 smart00448 REC cheY-homologous 96.9 0.0045 9.7E-08 46.2 7.7 54 726-780 2-55 (55)
153 COG2172 RsbW Anti-sigma regula 96.9 0.0094 2E-07 57.9 10.8 90 387-539 37-131 (146)
154 PRK00095 mutL DNA mismatch rep 96.8 0.0052 1.1E-07 74.0 10.9 87 390-536 22-114 (617)
155 PF06490 FleQ: Flagellar regul 96.6 0.017 3.7E-07 53.2 10.0 106 726-862 1-107 (109)
156 PF00072 Response_reg: Respons 96.3 0.028 6E-07 51.2 9.9 110 579-696 1-111 (112)
157 PF13589 HATPase_c_3: Histidin 96.2 0.0044 9.5E-08 59.7 3.8 67 476-547 35-106 (137)
158 COG0745 OmpR Response regulato 96.1 0.059 1.3E-06 56.7 12.0 118 577-703 1-119 (229)
159 PRK05559 DNA topoisomerase IV 95.9 0.016 3.6E-07 69.7 7.4 96 381-536 26-138 (631)
160 PRK05644 gyrB DNA gyrase subun 94.8 0.054 1.2E-06 65.3 7.2 88 381-524 26-130 (638)
161 COG2204 AtoC Response regulato 94.7 0.22 4.7E-06 57.2 11.2 178 577-762 5-209 (464)
162 PRK14083 HSP90 family protein; 94.6 0.022 4.9E-07 67.8 3.1 57 476-536 64-127 (601)
163 TIGR01055 parE_Gneg DNA topois 94.6 0.042 9.1E-07 66.0 5.4 51 476-526 63-125 (625)
164 cd02071 MM_CoA_mut_B12_BD meth 94.5 0.94 2E-05 42.5 13.3 111 727-860 2-121 (122)
165 PRK15347 two component system 94.3 0.42 9.2E-06 60.8 14.0 121 575-701 689-811 (921)
166 PRK02261 methylaspartate mutas 94.1 1.9 4.2E-05 41.4 14.6 118 724-864 3-135 (137)
167 TIGR01059 gyrB DNA gyrase, B s 94.0 0.088 1.9E-06 63.9 6.6 35 381-415 19-58 (654)
168 PLN03029 type-a response regul 93.7 0.51 1.1E-05 49.3 10.9 120 575-698 7-144 (222)
169 PRK11091 aerobic respiration c 93.6 0.76 1.6E-05 57.5 14.0 121 575-702 524-645 (779)
170 TIGR02956 TMAO_torS TMAO reduc 93.1 0.54 1.2E-05 60.2 11.9 121 575-701 701-822 (968)
171 PTZ00272 heat shock protein 83 92.9 0.073 1.6E-06 64.3 3.3 20 476-495 73-92 (701)
172 PRK05218 heat shock protein 90 92.7 0.36 7.9E-06 58.1 8.8 57 476-536 74-142 (613)
173 COG0784 CheY FOG: CheY-like re 92.5 1.7 3.7E-05 40.3 11.6 118 575-700 4-124 (130)
174 PF03709 OKR_DC_1_N: Orn/Lys/A 92.5 0.61 1.3E-05 43.4 8.2 95 738-855 7-103 (115)
175 PRK10841 hybrid sensory kinase 92.1 0.88 1.9E-05 57.9 11.8 119 574-700 799-917 (924)
176 cd02067 B12-binding B12 bindin 91.9 2 4.4E-05 39.9 11.1 95 731-849 10-110 (119)
177 COG5381 Uncharacterized protei 91.5 0.48 1E-05 44.8 6.2 29 391-419 64-92 (184)
178 PRK00742 chemotaxis-specific m 91.3 14 0.0003 41.4 19.1 106 576-688 3-110 (354)
179 PRK11466 hybrid sensory histid 91.2 1.1 2.4E-05 57.0 11.4 120 575-701 680-799 (914)
180 COG4999 Uncharacterized domain 91.1 1.6 3.5E-05 40.0 8.8 116 721-863 8-126 (140)
181 PTZ00130 heat shock protein 90 90.9 0.28 6.2E-06 59.7 5.1 48 476-523 136-194 (814)
182 PRK12555 chemotaxis-specific m 90.4 9.3 0.0002 42.6 16.5 116 577-700 1-128 (337)
183 PRK13837 two-component VirA-li 90.0 4.1 8.8E-05 51.4 14.7 119 575-702 696-814 (828)
184 TIGR02154 PhoB phosphate regul 90.0 3.3 7.1E-05 42.3 11.7 119 577-701 3-121 (226)
185 PRK10161 transcriptional regul 89.7 3.5 7.5E-05 42.5 11.7 119 577-701 3-121 (229)
186 smart00433 TOP2c Topoisomerase 89.5 0.39 8.5E-06 57.6 4.8 48 476-523 34-93 (594)
187 TIGR01818 ntrC nitrogen regula 88.6 2.4 5.2E-05 49.4 10.6 155 579-748 1-155 (463)
188 PRK15399 lysine decarboxylase 88.3 2 4.4E-05 52.2 9.6 98 726-848 2-105 (713)
189 PRK10955 DNA-binding transcrip 88.2 4.6 9.9E-05 41.6 11.3 114 578-701 3-116 (232)
190 PRK09468 ompR osmolarity respo 87.9 5.5 0.00012 41.4 11.8 119 576-702 5-123 (239)
191 TIGR03815 CpaE_hom_Actino heli 87.5 2.7 5.8E-05 46.6 9.5 85 748-863 1-86 (322)
192 COG3437 Response regulator con 87.1 3.3 7.1E-05 45.6 9.4 117 575-696 13-129 (360)
193 PRK09836 DNA-binding transcrip 87.0 6.2 0.00013 40.5 11.5 117 577-701 1-117 (227)
194 PRK11173 two-component respons 86.4 6.8 0.00015 40.7 11.5 116 577-701 4-119 (237)
195 COG0323 MutL DNA mismatch repa 86.0 1 2.2E-05 54.5 5.5 27 476-502 54-80 (638)
196 TIGR00640 acid_CoA_mut_C methy 85.9 16 0.00034 34.9 12.4 110 731-861 13-125 (132)
197 COG4566 TtrR Response regulato 85.7 4.6 9.9E-05 40.6 8.8 118 577-702 5-122 (202)
198 PRK15400 lysine decarboxylase 85.5 3.2 7E-05 50.5 9.3 80 726-830 2-87 (714)
199 PRK10336 DNA-binding transcrip 84.9 8.3 0.00018 39.1 11.1 117 577-701 1-117 (219)
200 PRK10643 DNA-binding transcrip 84.3 8 0.00017 39.3 10.6 117 577-701 1-117 (222)
201 cd04728 ThiG Thiazole synthase 84.3 10 0.00023 39.8 11.1 74 743-847 118-203 (248)
202 PRK11083 DNA-binding response 84.3 13 0.00028 37.9 12.2 117 577-701 4-120 (228)
203 PRK10766 DNA-binding transcrip 84.2 11 0.00024 38.4 11.7 116 577-701 3-118 (221)
204 CHL00148 orf27 Ycf27; Reviewed 84.0 12 0.00025 38.7 11.9 117 576-701 6-122 (240)
205 PRK00208 thiG thiazole synthas 83.8 11 0.00024 39.6 11.0 75 742-847 117-203 (250)
206 PRK10816 DNA-binding transcrip 83.7 8 0.00017 39.6 10.4 118 577-702 1-118 (223)
207 COG4565 CitB Response regulato 83.5 5.4 0.00012 40.8 8.4 115 578-700 2-118 (224)
208 PRK11517 transcriptional regul 83.5 12 0.00025 38.2 11.5 116 577-701 1-116 (223)
209 PRK10701 DNA-binding transcrip 82.9 10 0.00023 39.3 11.0 116 578-702 3-118 (240)
210 TIGR01501 MthylAspMutase methy 82.4 26 0.00056 33.5 12.2 108 733-863 14-132 (134)
211 PRK13435 response regulator; P 82.4 20 0.00044 33.9 12.0 115 576-701 5-120 (145)
212 PRK10430 DNA-binding transcrip 82.4 11 0.00024 39.5 11.0 117 577-699 2-120 (239)
213 PRK14939 gyrB DNA gyrase subun 82.3 0.93 2E-05 55.5 3.0 35 381-415 25-65 (756)
214 PRK10529 DNA-binding transcrip 82.2 8.2 0.00018 39.5 9.8 116 577-701 2-117 (225)
215 TIGR02875 spore_0_A sporulatio 81.3 16 0.00034 38.9 11.8 120 577-702 3-124 (262)
216 PRK13856 two-component respons 81.1 13 0.00028 38.8 10.9 116 578-701 3-118 (241)
217 PRK15115 response regulator Gl 80.8 8.3 0.00018 44.7 10.1 118 576-701 5-122 (444)
218 PF02310 B12-binding: B12 bind 80.7 9.2 0.0002 35.3 8.6 93 733-849 13-112 (121)
219 PHA02569 39 DNA topoisomerase 80.6 1.1 2.4E-05 53.8 2.7 51 476-526 80-144 (602)
220 TIGR03787 marine_sort_RR prote 80.6 19 0.00041 36.8 11.8 118 578-701 2-119 (227)
221 TIGR01058 parE_Gpos DNA topois 80.4 1.1 2.3E-05 54.2 2.6 51 476-526 67-129 (637)
222 PRK10840 transcriptional regul 79.9 19 0.00041 36.9 11.5 121 576-701 3-125 (216)
223 COG4753 Response regulator con 79.8 5.6 0.00012 45.9 7.9 116 578-701 3-121 (475)
224 COG0326 HtpG Molecular chapero 79.5 2.2 4.7E-05 50.5 4.6 49 475-523 74-133 (623)
225 cd02072 Glm_B12_BD B12 binding 79.5 42 0.0009 31.9 12.3 105 733-860 12-127 (128)
226 cd02070 corrinoid_protein_B12- 79.4 18 0.0004 37.0 11.0 101 724-848 82-191 (201)
227 PRK09958 DNA-binding transcrip 79.4 13 0.00027 37.4 9.8 117 577-701 1-118 (204)
228 PRK09959 hybrid sensory histid 79.2 9.2 0.0002 50.4 10.9 118 576-701 958-1075(1197)
229 PRK10923 glnG nitrogen regulat 79.0 12 0.00026 43.7 10.8 117 577-701 4-120 (469)
230 PRK10365 transcriptional regul 78.9 7.9 0.00017 44.7 9.1 118 576-701 5-122 (441)
231 cd02069 methionine_synthase_B1 78.6 14 0.00031 38.3 9.9 104 725-851 89-204 (213)
232 PRK10610 chemotaxis regulatory 78.5 35 0.00076 30.1 11.7 119 576-700 5-124 (129)
233 PRK10046 dpiA two-component re 77.6 17 0.00037 37.7 10.3 117 576-700 4-122 (225)
234 PRK09191 two-component respons 75.1 31 0.00067 36.3 11.8 115 577-701 138-253 (261)
235 PRK14084 two-component respons 74.0 26 0.00056 36.6 10.8 115 577-701 1-117 (246)
236 PRK09483 response regulator; P 73.3 27 0.00059 35.3 10.5 117 577-701 2-120 (217)
237 PRK10618 phosphotransfer inter 73.2 13 0.00028 47.2 9.3 38 571-608 684-721 (894)
238 PRK10710 DNA-binding transcrip 73.1 51 0.0011 33.8 12.6 116 577-701 11-126 (240)
239 TIGR01387 cztR_silR_copR heavy 72.7 26 0.00055 35.4 10.1 115 579-701 1-115 (218)
240 PRK15479 transcriptional regul 72.4 29 0.00064 35.0 10.5 116 578-701 2-117 (221)
241 COG3947 Response regulator con 72.2 24 0.00053 37.9 9.4 114 578-701 2-115 (361)
242 PRK11361 acetoacetate metaboli 72.0 19 0.00042 41.7 10.0 118 576-701 4-121 (457)
243 PF02254 TrkA_N: TrkA-N domain 70.7 50 0.0011 30.1 10.6 93 725-847 22-115 (116)
244 PRK13557 histidine kinase; Pro 69.8 50 0.0011 38.8 13.0 121 574-701 413-534 (540)
245 PRK11697 putative two-componen 67.6 45 0.00097 34.5 10.8 114 577-701 2-117 (238)
246 PTZ00109 DNA gyrase subunit b; 66.2 0.58 1.3E-05 57.5 -4.4 17 510-526 247-264 (903)
247 PLN03237 DNA topoisomerase 2; 65.5 10 0.00022 49.6 6.0 53 476-528 112-176 (1465)
248 PF03602 Cons_hypoth95: Conser 65.0 10 0.00023 38.3 5.1 66 725-792 66-138 (183)
249 PRK01130 N-acetylmannosamine-6 64.7 61 0.0013 33.6 11.0 84 739-847 109-201 (221)
250 COG2197 CitB Response regulato 64.6 71 0.0015 33.0 11.3 116 578-701 2-119 (211)
251 cd05212 NAD_bind_m-THF_DH_Cycl 62.9 26 0.00056 33.8 7.1 54 722-781 26-83 (140)
252 COG2185 Sbm Methylmalonyl-CoA 62.6 1.5E+02 0.0033 28.6 12.5 117 725-862 13-136 (143)
253 PRK10558 alpha-dehydro-beta-de 62.3 75 0.0016 34.0 11.2 99 740-860 10-111 (256)
254 PRK00043 thiE thiamine-phospha 62.2 1.1E+02 0.0023 31.3 12.2 91 746-861 102-206 (212)
255 COG4122 Predicted O-methyltran 61.9 27 0.00059 36.3 7.4 55 725-780 85-143 (219)
256 cd00156 REC Signal receiver do 61.4 39 0.00085 28.2 7.6 110 581-698 2-111 (113)
257 PRK10360 DNA-binding transcrip 61.4 54 0.0012 32.4 9.6 113 578-701 3-117 (196)
258 TIGR02915 PEP_resp_reg putativ 61.3 43 0.00093 38.8 10.0 116 579-701 1-118 (445)
259 TIGR00007 phosphoribosylformim 61.0 72 0.0016 33.2 10.8 66 758-847 148-217 (230)
260 TIGR03321 alt_F1F0_F0_B altern 60.4 2.3E+02 0.005 30.0 17.4 19 387-405 191-209 (246)
261 PRK09935 transcriptional regul 59.5 74 0.0016 31.7 10.3 118 576-701 3-122 (210)
262 TIGR02370 pyl_corrinoid methyl 59.5 74 0.0016 32.5 10.2 99 725-847 85-192 (197)
263 PRK00278 trpC indole-3-glycero 58.4 1.8E+02 0.0039 31.1 13.3 96 728-847 139-239 (260)
264 PRK10128 2-keto-3-deoxy-L-rham 58.2 1E+02 0.0022 33.2 11.3 99 740-860 9-110 (267)
265 PRK09390 fixJ response regulat 58.1 56 0.0012 32.1 9.0 117 577-701 4-120 (202)
266 PRK13111 trpA tryptophan synth 58.0 27 0.0006 37.3 6.9 57 783-861 75-137 (258)
267 TIGR01334 modD putative molybd 58.0 50 0.0011 35.7 8.9 71 750-846 191-261 (277)
268 PF01596 Methyltransf_3: O-met 57.7 29 0.00064 35.7 6.9 55 724-778 70-130 (205)
269 TIGR03239 GarL 2-dehydro-3-deo 57.3 1.2E+02 0.0025 32.4 11.5 85 754-860 19-104 (249)
270 cd04729 NanE N-acetylmannosami 57.2 1.4E+02 0.003 30.9 12.0 82 742-848 116-206 (219)
271 PRK09426 methylmalonyl-CoA mut 57.1 78 0.0017 39.1 11.4 111 731-864 593-708 (714)
272 PRK13587 1-(5-phosphoribosyl)- 56.2 71 0.0015 33.6 9.6 67 758-847 151-220 (234)
273 KOG1977 DNA mismatch repair pr 55.9 23 0.00051 42.1 6.2 44 474-517 49-98 (1142)
274 COG4567 Response regulator con 55.6 75 0.0016 31.0 8.5 113 578-699 11-124 (182)
275 PF10087 DUF2325: Uncharacteri 55.0 1.5E+02 0.0032 26.4 10.2 64 726-794 1-70 (97)
276 PRK05458 guanosine 5'-monophos 54.3 1.9E+02 0.0042 32.1 12.9 97 726-847 113-229 (326)
277 cd04723 HisA_HisF Phosphoribos 54.3 79 0.0017 33.2 9.6 67 757-847 148-217 (233)
278 cd04726 KGPDC_HPS 3-Keto-L-gul 53.8 1.9E+02 0.004 29.3 12.2 96 726-847 79-185 (202)
279 COG0512 PabA Anthranilate/para 53.8 22 0.00047 36.0 4.9 52 725-777 2-53 (191)
280 PF06490 FleQ: Flagellar regul 53.5 88 0.0019 28.6 8.6 33 578-610 1-33 (109)
281 PLN02591 tryptophan synthase 53.0 36 0.00079 36.2 6.8 44 818-861 77-126 (250)
282 PF07568 HisKA_2: Histidine ki 52.9 88 0.0019 26.6 7.9 72 282-362 2-73 (76)
283 cd00331 IGPS Indole-3-glycerol 52.5 1.9E+02 0.004 29.8 12.1 80 744-847 117-200 (217)
284 COG0187 GyrB Type IIA topoisom 52.0 1.9 4E-05 50.8 -3.3 51 476-526 69-131 (635)
285 PRK13125 trpA tryptophan synth 51.7 1.5E+02 0.0033 31.3 11.4 89 736-849 117-215 (244)
286 COG3105 Uncharacterized protei 50.8 1.5E+02 0.0033 27.9 9.4 26 225-250 6-31 (138)
287 COG0742 N6-adenine-specific me 49.2 59 0.0013 33.0 7.2 53 725-777 67-122 (187)
288 PTZ00108 DNA topoisomerase 2-l 49.2 16 0.00035 47.8 4.0 51 476-526 95-157 (1388)
289 PRK08385 nicotinate-nucleotide 49.1 1.6E+02 0.0035 31.9 11.0 96 726-846 156-257 (278)
290 TIGR00262 trpA tryptophan synt 49.1 49 0.0011 35.4 7.2 57 783-861 73-135 (256)
291 cd02068 radical_SAM_B12_BD B12 48.9 1.4E+02 0.003 27.9 9.5 60 735-794 3-65 (127)
292 PRK10669 putative cation:proto 48.7 2E+02 0.0044 34.4 13.2 109 724-865 440-549 (558)
293 CHL00162 thiG thiamin biosynth 48.2 2E+02 0.0043 30.6 11.0 96 739-860 128-235 (267)
294 TIGR02855 spore_yabG sporulati 47.9 98 0.0021 33.1 8.8 96 725-843 105-221 (283)
295 PLN03128 DNA topoisomerase 2; 47.5 27 0.00058 45.2 5.5 50 476-525 87-148 (1135)
296 cd00452 KDPG_aldolase KDPG and 47.4 1.2E+02 0.0027 30.5 9.6 79 743-848 92-171 (190)
297 PF01408 GFO_IDH_MocA: Oxidore 46.5 1.2E+02 0.0027 27.5 8.7 34 828-861 73-108 (120)
298 PF05690 ThiG: Thiazole biosyn 46.4 1.6E+02 0.0034 31.0 9.8 84 738-847 113-203 (247)
299 PRK03659 glutathione-regulated 46.3 1.5E+02 0.0032 36.0 11.5 95 724-848 423-518 (601)
300 cd04724 Tryptophan_synthase_al 46.0 56 0.0012 34.6 7.0 42 819-860 76-123 (242)
301 PF14689 SPOB_a: Sensor_kinase 45.3 91 0.002 25.4 6.6 44 278-325 15-58 (62)
302 PF11044 TMEMspv1-c74-12: Plec 45.2 1.3E+02 0.0029 22.7 6.5 29 224-252 5-33 (49)
303 PF05582 Peptidase_U57: YabG p 45.1 1.5E+02 0.0034 31.9 9.8 96 725-843 106-222 (287)
304 PRK07896 nicotinate-nucleotide 44.9 88 0.0019 34.1 8.3 71 750-846 202-272 (289)
305 PRK15369 two component system 44.8 1.8E+02 0.004 28.4 10.5 118 576-701 3-122 (211)
306 PRK10651 transcriptional regul 44.7 1.9E+02 0.004 28.7 10.5 118 576-701 6-125 (216)
307 PRK10742 putative methyltransf 44.6 2.9E+02 0.0062 29.5 11.7 97 724-848 110-218 (250)
308 KOG1979 DNA mismatch repair pr 44.5 31 0.00068 40.3 4.9 26 476-501 58-83 (694)
309 cd04730 NPD_like 2-Nitropropan 44.1 2.6E+02 0.0056 29.1 11.7 84 740-848 94-185 (236)
310 PRK12724 flagellar biosynthesi 43.9 2.4E+02 0.0052 32.5 11.8 109 724-851 252-370 (432)
311 PRK00811 spermidine synthase; 43.4 1.1E+02 0.0024 33.2 8.9 55 725-781 101-162 (283)
312 TIGR03151 enACPred_II putative 43.3 2E+02 0.0043 31.7 10.9 83 740-847 101-189 (307)
313 TIGR02311 HpaI 2,4-dihydroxyhe 43.0 2.5E+02 0.0055 29.8 11.4 86 754-861 19-105 (249)
314 TIGR00693 thiE thiamine-phosph 42.7 1.7E+02 0.0038 29.4 9.8 71 752-847 101-179 (196)
315 cd04732 HisA HisA. Phosphorib 42.7 2.3E+02 0.0049 29.4 11.0 66 758-847 149-218 (234)
316 PRK06543 nicotinate-nucleotide 42.6 1.9E+02 0.0042 31.3 10.4 68 750-846 196-263 (281)
317 cd00564 TMP_TenI Thiamine mono 42.5 1.9E+02 0.0042 28.7 10.2 68 755-848 103-178 (196)
318 COG0157 NadC Nicotinate-nucleo 42.3 1.3E+02 0.0028 32.4 8.7 91 727-845 161-259 (280)
319 COG5385 Uncharacterized protei 42.0 3.6E+02 0.0077 26.7 17.5 121 278-415 18-139 (214)
320 cd02065 B12-binding_like B12 b 41.3 1.3E+02 0.0028 27.6 8.0 62 731-793 10-75 (125)
321 PRK15411 rcsA colanic acid cap 41.0 2.9E+02 0.0062 28.3 11.2 118 578-701 2-122 (207)
322 PRK03562 glutathione-regulated 41.0 1.7E+02 0.0037 35.6 10.9 93 724-846 423-516 (621)
323 PRK00748 1-(5-phosphoribosyl)- 40.9 99 0.0021 32.2 7.9 66 758-847 149-219 (233)
324 PRK07428 nicotinate-nucleotide 40.9 95 0.0021 33.8 7.8 70 751-846 200-269 (288)
325 PRK05848 nicotinate-nucleotide 40.7 2.1E+02 0.0047 30.9 10.4 72 750-847 185-256 (273)
326 TIGR00736 nifR3_rel_arch TIM-b 39.6 1.2E+02 0.0026 32.0 8.0 29 819-847 191-219 (231)
327 PRK13558 bacterio-opsin activa 39.1 1E+02 0.0023 37.6 8.9 116 577-700 8-125 (665)
328 PRK10403 transcriptional regul 39.1 2.6E+02 0.0056 27.6 10.5 116 577-700 7-124 (215)
329 PRK14471 F0F1 ATP synthase sub 38.2 4E+02 0.0086 26.2 14.3 46 225-270 10-60 (164)
330 PRK06096 molybdenum transport 38.2 1.1E+02 0.0025 33.1 7.8 71 750-846 192-262 (284)
331 PF06295 DUF1043: Protein of u 38.0 3.5E+02 0.0076 25.6 10.3 11 313-323 70-80 (128)
332 PRK11840 bifunctional sulfur c 37.9 3.7E+02 0.0081 29.7 11.7 92 743-860 192-295 (326)
333 CHL00200 trpA tryptophan synth 37.7 83 0.0018 33.8 6.7 42 818-859 90-137 (263)
334 PRK06731 flhF flagellar biosyn 37.4 4.2E+02 0.009 28.6 12.0 107 725-851 104-222 (270)
335 TIGR00566 trpG_papA glutamine 36.5 89 0.0019 31.6 6.5 48 727-775 2-49 (188)
336 PRK11677 hypothetical protein; 36.2 4E+02 0.0086 25.6 10.9 9 236-244 12-20 (134)
337 TIGR01163 rpe ribulose-phospha 36.0 3.1E+02 0.0066 27.8 10.5 92 736-848 92-193 (210)
338 cd04727 pdxS PdxS is a subunit 35.9 1.4E+02 0.0031 32.1 8.0 29 819-847 194-224 (283)
339 PRK14974 cell division protein 35.1 3.9E+02 0.0084 29.9 11.6 107 724-851 168-290 (336)
340 TIGR00735 hisF imidazoleglycer 35.0 2.8E+02 0.006 29.5 10.3 42 819-860 199-247 (254)
341 TIGR00064 ftsY signal recognit 34.9 3.9E+02 0.0084 28.8 11.4 109 724-847 100-224 (272)
342 PRK11889 flhF flagellar biosyn 34.8 4.6E+02 0.0099 30.2 12.0 108 724-851 269-388 (436)
343 PRK05458 guanosine 5'-monophos 34.6 1.2E+02 0.0025 33.8 7.3 67 757-846 99-166 (326)
344 cd04722 TIM_phosphate_binding 34.0 2.3E+02 0.0049 27.8 9.1 57 768-847 135-198 (200)
345 PRK11677 hypothetical protein; 34.0 2.2E+02 0.0048 27.2 8.1 27 228-254 8-34 (134)
346 PRK05282 (alpha)-aspartyl dipe 33.6 2E+02 0.0043 30.3 8.6 64 724-794 31-100 (233)
347 COG3707 AmiR Response regulato 33.3 1.7E+02 0.0038 29.7 7.6 117 575-700 4-121 (194)
348 KOG1978 DNA mismatch repair pr 32.5 42 0.00091 40.2 3.6 25 476-500 51-75 (672)
349 PRK11359 cyclic-di-GMP phospho 32.4 3E+02 0.0064 34.3 11.6 105 738-864 681-796 (799)
350 PRK10100 DNA-binding transcrip 32.2 3.5E+02 0.0077 27.9 10.2 116 576-701 10-126 (216)
351 PRK13428 F0F1 ATP synthase sub 32.2 8.6E+02 0.019 28.3 15.2 61 227-287 5-70 (445)
352 TIGR00343 pyridoxal 5'-phospha 32.1 68 0.0015 34.6 4.8 29 819-847 197-227 (287)
353 PF01564 Spermine_synth: Sperm 32.1 87 0.0019 33.2 5.8 68 725-793 101-179 (246)
354 TIGR00095 RNA methyltransferas 32.0 1.4E+02 0.0029 30.3 6.9 55 725-779 73-131 (189)
355 PRK07649 para-aminobenzoate/an 31.9 56 0.0012 33.4 4.1 48 727-775 2-49 (195)
356 PRK15029 arginine decarboxylas 31.8 2.7E+02 0.0058 34.7 10.5 72 577-649 1-81 (755)
357 cd00331 IGPS Indole-3-glycerol 31.5 1.7E+02 0.0037 30.1 7.8 43 819-861 72-116 (217)
358 cd00429 RPE Ribulose-5-phospha 31.4 4.2E+02 0.0091 26.7 10.7 88 740-848 97-194 (211)
359 PLN02589 caffeoyl-CoA O-methyl 31.1 1.6E+02 0.0035 31.3 7.5 54 725-778 105-165 (247)
360 TIGR00262 trpA tryptophan synt 30.8 6.2E+02 0.013 27.0 12.0 97 727-849 119-228 (256)
361 PF07851 TMPIT: TMPIT-like pro 30.7 6.3E+02 0.014 28.1 12.0 79 253-333 8-90 (330)
362 COG0813 DeoD Purine-nucleoside 30.6 68 0.0015 33.2 4.3 24 384-407 19-42 (236)
363 PRK05703 flhF flagellar biosyn 30.5 4E+02 0.0087 30.8 11.2 109 724-851 251-368 (424)
364 PRK07259 dihydroorotate dehydr 30.1 2.5E+02 0.0054 30.6 9.2 47 819-865 234-286 (301)
365 smart00448 REC cheY-homologous 29.9 1.9E+02 0.004 19.8 7.0 50 578-629 2-51 (55)
366 TIGR01163 rpe ribulose-phospha 29.5 3.6E+02 0.0078 27.2 9.8 56 783-861 43-99 (210)
367 TIGR01037 pyrD_sub1_fam dihydr 29.5 80 0.0017 34.5 5.1 47 819-865 234-286 (300)
368 PRK14474 F0F1 ATP synthase sub 29.3 7.2E+02 0.016 26.4 14.3 26 225-250 7-32 (250)
369 PRK09174 F0F1 ATP synthase sub 29.0 6.5E+02 0.014 25.9 14.8 22 250-271 85-106 (204)
370 PLN02274 inosine-5'-monophosph 28.9 7E+02 0.015 29.6 13.0 99 724-847 260-379 (505)
371 PRK06106 nicotinate-nucleotide 28.8 1.8E+02 0.0039 31.6 7.4 68 750-846 197-264 (281)
372 PF01729 QRPTase_C: Quinolinat 28.8 1.9E+02 0.0041 28.8 7.1 71 750-846 83-153 (169)
373 PRK06559 nicotinate-nucleotide 28.8 3.8E+02 0.0083 29.2 9.9 92 726-846 169-267 (290)
374 cd01748 GATase1_IGP_Synthase T 28.1 2.2E+02 0.0048 28.8 7.8 42 727-775 1-42 (198)
375 PRK09016 quinolinate phosphori 27.7 2E+02 0.0044 31.4 7.6 68 750-846 211-278 (296)
376 PLN02823 spermine synthase 27.6 1.4E+02 0.0031 33.3 6.7 55 725-781 128-188 (336)
377 PRK01130 N-acetylmannosamine-6 27.6 1.7E+02 0.0037 30.3 7.0 42 819-861 56-116 (221)
378 PLN02366 spermidine synthase 27.5 3.2E+02 0.0068 30.1 9.3 68 725-793 116-194 (308)
379 COG0626 MetC Cystathionine bet 27.3 4E+02 0.0087 30.5 10.2 53 724-777 102-157 (396)
380 COG2022 ThiG Uncharacterized e 27.3 5.8E+02 0.013 26.9 10.2 84 738-847 120-210 (262)
381 TIGR00417 speE spermidine synt 27.2 3.3E+02 0.0072 29.1 9.3 67 725-793 97-174 (270)
382 KOG1562 Spermidine synthase [A 27.1 2.1E+02 0.0045 31.2 7.3 62 726-788 147-214 (337)
383 PF02581 TMP-TENI: Thiamine mo 27.1 3.1E+02 0.0067 27.3 8.5 82 739-846 87-175 (180)
384 PLN02334 ribulose-phosphate 3- 27.1 4.9E+02 0.011 27.0 10.4 82 742-847 109-201 (229)
385 PLN02781 Probable caffeoyl-CoA 27.1 2.5E+02 0.0054 29.5 8.1 54 725-778 94-153 (234)
386 PRK13566 anthranilate synthase 27.0 1.7E+02 0.0037 36.2 7.8 52 722-775 524-575 (720)
387 PRK06774 para-aminobenzoate sy 27.0 77 0.0017 32.1 4.2 48 727-775 2-49 (191)
388 PRK06978 nicotinate-nucleotide 27.0 2E+02 0.0043 31.5 7.3 68 750-846 208-275 (294)
389 PTZ00314 inosine-5'-monophosph 27.0 5.1E+02 0.011 30.6 11.4 99 724-847 253-372 (495)
390 PRK04180 pyridoxal biosynthesi 26.9 1.1E+02 0.0023 33.3 5.2 29 819-847 203-233 (293)
391 PRK02083 imidazole glycerol ph 26.9 4.6E+02 0.0099 27.7 10.3 43 819-861 197-246 (253)
392 PLN02716 nicotinate-nucleotide 26.3 3.5E+02 0.0076 29.8 9.1 74 750-846 206-288 (308)
393 PRK05581 ribulose-phosphate 3- 26.2 6.8E+02 0.015 25.5 11.3 100 740-861 101-216 (220)
394 PRK12723 flagellar biosynthesi 26.2 6.7E+02 0.015 28.6 11.8 108 724-851 206-323 (388)
395 COG2061 ACT-domain-containing 26.2 2.4E+02 0.0052 27.5 6.8 58 727-785 53-129 (170)
396 PLN02335 anthranilate synthase 26.1 1.1E+02 0.0024 31.9 5.2 51 724-775 18-68 (222)
397 PRK14722 flhF flagellar biosyn 26.0 4E+02 0.0088 30.2 9.9 94 725-837 168-265 (374)
398 COG0159 TrpA Tryptophan syntha 25.8 1.5E+02 0.0033 31.7 6.2 36 817-852 92-133 (265)
399 PRK14723 flhF flagellar biosyn 25.5 5.3E+02 0.011 32.2 11.4 107 725-851 216-334 (767)
400 cd01080 NAD_bind_m-THF_DH_Cycl 25.3 1.8E+02 0.004 28.9 6.3 58 722-781 42-99 (168)
401 KOG0020 Endoplasmic reticulum 25.2 88 0.0019 35.9 4.3 17 476-492 143-159 (785)
402 PRK04302 triosephosphate isome 25.2 7.7E+02 0.017 25.5 11.9 30 819-848 173-202 (223)
403 TIGR00336 pyrE orotate phospho 24.7 3.2E+02 0.0069 27.2 8.0 33 721-753 105-140 (173)
404 KOG1478 3-keto sterol reductas 24.6 45 0.00097 35.3 1.8 28 511-548 12-39 (341)
405 TIGR01232 lacD tagatose 1,6-di 24.4 2.2E+02 0.0047 31.5 7.0 43 785-847 227-275 (325)
406 PRK05637 anthranilate synthase 24.3 1.4E+02 0.003 30.8 5.5 49 725-775 2-50 (208)
407 PRK03958 tRNA 2'-O-methylase; 24.2 5.3E+02 0.011 25.9 9.1 64 725-793 32-98 (176)
408 TIGR03128 RuMP_HxlA 3-hexulose 23.9 7.6E+02 0.016 24.9 14.3 97 736-860 90-203 (206)
409 PRK06231 F0F1 ATP synthase sub 23.9 8E+02 0.017 25.2 15.7 47 224-270 49-100 (205)
410 PRK13453 F0F1 ATP synthase sub 23.9 7.2E+02 0.016 24.7 15.5 21 229-249 24-44 (173)
411 cd01948 EAL EAL domain. This d 23.7 2.6E+02 0.0056 28.6 7.6 93 738-852 135-238 (240)
412 PF10883 DUF2681: Protein of u 23.6 5.1E+02 0.011 22.8 9.0 7 238-244 16-22 (87)
413 PLN02476 O-methyltransferase 23.6 2.7E+02 0.0059 30.2 7.6 54 725-778 144-203 (278)
414 PRK06843 inosine 5-monophospha 23.4 8.2E+02 0.018 28.1 11.8 101 724-847 165-284 (404)
415 PRK13141 hisH imidazole glycer 23.4 3.6E+02 0.0077 27.5 8.4 43 726-775 1-43 (205)
416 PRK01033 imidazole glycerol ph 23.4 3E+02 0.0066 29.3 8.1 54 771-847 168-225 (258)
417 PRK04338 N(2),N(2)-dimethylgua 23.3 4.2E+02 0.0092 30.1 9.6 63 725-793 82-147 (382)
418 PRK14473 F0F1 ATP synthase sub 23.2 7.1E+02 0.015 24.3 15.5 26 225-250 10-35 (164)
419 PF10669 Phage_Gp23: Protein g 23.2 5.4E+02 0.012 22.9 12.3 18 268-285 63-80 (121)
420 cd01573 modD_like ModD; Quinol 23.1 3.1E+02 0.0066 29.7 8.0 71 751-847 187-257 (272)
421 PF13659 Methyltransf_26: Meth 23.0 2.2E+02 0.0048 25.5 6.1 54 725-779 24-80 (117)
422 COG0421 SpeE Spermidine syntha 22.9 1.9E+02 0.004 31.5 6.3 67 725-793 101-178 (282)
423 PRK07695 transcriptional regul 22.8 4.5E+02 0.0097 26.6 8.9 66 754-845 102-174 (201)
424 cd00381 IMPDH IMPDH: The catal 22.8 8.4E+02 0.018 27.0 11.6 29 819-847 197-225 (325)
425 PRK04457 spermidine synthase; 22.7 4.5E+02 0.0098 28.1 9.2 68 724-793 90-165 (262)
426 COG4825 Uncharacterized membra 22.6 2.4E+02 0.0052 30.5 6.6 54 721-776 177-233 (395)
427 TIGR00734 hisAF_rel hisA/hisF 22.5 3.8E+02 0.0082 27.9 8.4 55 770-847 155-212 (221)
428 PRK10037 cell division protein 22.5 3.5E+02 0.0077 28.4 8.4 13 723-735 29-41 (250)
429 PRK13125 trpA tryptophan synth 22.4 2.3E+02 0.0051 29.9 6.9 34 818-851 73-113 (244)
430 PRK08007 para-aminobenzoate sy 22.3 1E+02 0.0022 31.1 4.0 49 727-776 2-50 (187)
431 TIGR01425 SRP54_euk signal rec 22.3 7.2E+02 0.016 28.8 11.1 67 724-794 128-207 (429)
432 smart00052 EAL Putative diguan 22.2 3.8E+02 0.0082 27.4 8.5 93 739-853 137-240 (241)
433 PRK13585 1-(5-phosphoribosyl)- 22.1 5.9E+02 0.013 26.5 9.9 79 756-858 150-238 (241)
434 COG3967 DltE Short-chain dehyd 22.0 54 0.0012 33.8 1.8 18 508-525 11-28 (245)
435 cd00532 MGS-like MGS-like doma 21.9 2.4E+02 0.0051 25.8 6.0 51 740-791 34-95 (112)
436 TIGR01815 TrpE-clade3 anthrani 21.8 5.1E+02 0.011 32.2 10.4 52 722-775 514-565 (717)
437 PRK08476 F0F1 ATP synthase sub 21.7 7.1E+02 0.015 23.8 14.2 23 227-249 11-33 (141)
438 TIGR01302 IMP_dehydrog inosine 21.7 6.7E+02 0.015 29.2 11.0 101 724-847 236-355 (450)
439 PRK12704 phosphodiesterase; Pr 21.7 73 0.0016 37.8 3.1 43 821-863 251-295 (520)
440 PRK12727 flagellar biosynthesi 21.6 5E+02 0.011 31.0 9.7 59 724-784 380-441 (559)
441 PRK14472 F0F1 ATP synthase sub 21.5 8E+02 0.017 24.3 15.6 16 233-248 28-43 (175)
442 COG2820 Udp Uridine phosphoryl 21.3 2E+02 0.0043 30.3 5.7 25 383-408 21-45 (248)
443 cd04740 DHOD_1B_like Dihydroor 21.2 1.2E+02 0.0026 33.0 4.5 47 819-865 231-283 (296)
444 PRK12726 flagellar biosynthesi 21.1 7.2E+02 0.016 28.4 10.5 108 724-851 234-353 (407)
445 PF06073 DUF934: Bacterial pro 21.0 6.7E+02 0.014 23.2 9.3 71 769-863 19-93 (110)
446 PRK10060 RNase II stability mo 20.9 6.2E+02 0.013 31.0 11.2 107 737-865 543-660 (663)
447 PF10090 DUF2328: Uncharacteri 20.8 8.7E+02 0.019 24.5 19.3 108 292-415 3-111 (182)
448 PRK05742 nicotinate-nucleotide 20.7 4.5E+02 0.0098 28.5 8.7 69 750-847 192-260 (277)
449 PF00290 Trp_syntA: Tryptophan 20.7 98 0.0021 33.2 3.5 48 784-853 74-127 (259)
450 PF07492 Trehalase_Ca-bi: Neut 20.4 71 0.0015 22.1 1.5 11 474-484 13-23 (30)
451 PRK04128 1-(5-phosphoribosyl)- 20.4 6.1E+02 0.013 26.5 9.4 83 755-862 30-118 (228)
452 cd06338 PBP1_ABC_ligand_bindin 20.0 1E+03 0.023 25.7 12.0 66 725-793 142-218 (345)
453 PF02882 THF_DHG_CYH_C: Tetrah 20.0 1.7E+02 0.0036 29.0 4.7 59 722-782 34-92 (160)
No 1
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=6.9e-62 Score=611.78 Aligned_cols=505 Identities=36% Similarity=0.521 Sum_probs=410.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeE
Q 002879 265 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 344 (871)
Q Consensus 265 ~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~ 344 (871)
+++++++++.|++|++++||||||||++|+|+++++.+...++.+++|++.+..++++|..+|+++++++|++.+++.++
T Consensus 283 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34566677788999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccc
Q 002879 345 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 424 (871)
Q Consensus 345 ~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 424 (871)
..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++.....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~---- 438 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL---- 438 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998887754321
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCC
Q 002879 425 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 504 (871)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s 504 (871)
..+...+.|+|.|+|+|||++.+++||+||+|.+.+
T Consensus 439 --------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 474 (919)
T PRK11107 439 --------------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS 474 (919)
T ss_pred --------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC
Confidence 112235889999999999999999999999999998
Q ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCC
Q 002879 505 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 584 (871)
Q Consensus 505 ~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vd~ 584 (871)
+++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+........ .......+.|.+++++|+
T Consensus 475 ~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~ 544 (919)
T PRK11107 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEP 544 (919)
T ss_pred CCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeC
Confidence 8888999999999999999999999999999999999999999865432110 111234578899999999
Q ss_pred chhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEEEecc
Q 002879 585 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 664 (871)
Q Consensus 585 ~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 664 (871)
++..+......|..+|+.+..+.+..+ + ....++.++++........... .....+.... ....++++..+
T Consensus 545 ~~~~~~~l~~~L~~~g~~v~~~~~~~~-l-----~~~~~d~il~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~i~~~~~ 615 (919)
T PRK11107 545 NSAAAQATLDILSETPLEVTYSPTLSQ-L-----PEAHYDILLLGLPVTFREPLTM--LHERLAKAKS-MTDFLILALPC 615 (919)
T ss_pred CHHHHHHHHHHHHHCCCEEEEcCCHHH-h-----ccCCCCEEEecccCCCCCCHHH--HHHHHHhhhh-cCCcEEEEeCC
Confidence 999999999999999999999988776 2 2345777777765543322211 1112222111 12233333333
Q ss_pred CCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHHHHHHHH
Q 002879 665 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 744 (871)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L 744 (871)
........ ....+...++.||+..+.+...+............. .......+.+|||||||+.++..++.+|
T Consensus 616 ~~~~~~~~-~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~vLivdd~~~~~~~l~~~L 687 (919)
T PRK11107 616 HEQVLAEQ-LKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLP-------PTDESRLPLTVMAVDDNPANLKLIGALL 687 (919)
T ss_pred cchhhHHH-HhhCCCceEECCCCCHHHHHHHHHHhhccccccccc-------ccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 22222111 122355678999999999888887654221111000 0011123468999999999999999999
Q ss_pred HHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEE
Q 002879 745 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 824 (871)
Q Consensus 745 ~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa 824 (871)
+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||+++++.||+.. ...++|||+
T Consensus 688 ~~~~~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~--------------------~~~~~pii~ 746 (919)
T PRK11107 688 EEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLP--------------------HNQNTPIIA 746 (919)
T ss_pred HHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcc--------------------cCCCCCEEE
Confidence 999999999999999999985 57899999999999999999999999742 134689999
Q ss_pred EccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 825 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 825 lTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
+|++...+...+|+++||++|+.||++.++|...+.++...
T Consensus 747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998754
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=4.7e-61 Score=595.02 Aligned_cols=488 Identities=29% Similarity=0.450 Sum_probs=387.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002879 259 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 338 (871)
Q Consensus 259 ~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~ 338 (871)
++++++++++++++++|++|+++|||||||||++|+|++++|.....+++++++++.+..++++|..+|+++|+++|+++
T Consensus 431 ~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~ 510 (924)
T PRK10841 431 ESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIES 510 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666777888889999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred CCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEe
Q 002879 339 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 418 (871)
Q Consensus 339 g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 418 (871)
+.+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+|||.||++||+|||+.|.|.|.+...
T Consensus 511 ~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~ 590 (924)
T PRK10841 511 EQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD 590 (924)
T ss_pred CCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999988877531
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccc
Q 002879 419 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 498 (871)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 498 (871)
+ ..+.|+|.|||+||+++.+++||+||
T Consensus 591 ~-----------------------------------------------------~~l~i~V~DtG~GI~~e~~~~lFepF 617 (924)
T PRK10841 591 G-----------------------------------------------------DYLSFRVRDTGVGIPAKEVVRLFDPF 617 (924)
T ss_pred C-----------------------------------------------------CEEEEEEEEcCcCCCHHHHHHHhccc
Confidence 1 24789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcE
Q 002879 499 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMK 578 (871)
Q Consensus 499 ~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 578 (871)
+|.+.+.++..+|+||||+||++|+++|||+|+++|.+|+||+|+|++|+....... ........|.+
T Consensus 618 ~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~------------~~~~~~~~g~~ 685 (924)
T PRK10841 618 FQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ------------KKGVEGLQGKR 685 (924)
T ss_pred ccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc------------cccCcccCCCE
Confidence 999887777788999999999999999999999999999999999999986432211 11223467888
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceE
Q 002879 579 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 658 (871)
Q Consensus 579 ~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (871)
++++.+++........+++++|+.+....... ....+.++.|........ ... . ..
T Consensus 686 i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~---------~~~~d~~i~d~~~~~~~~-~~~-~-~~------------ 741 (924)
T PRK10841 686 CWLAVRNASLEQFLETLLQRSGIQVQRYEGQE---------PTPEDVLITDDPVQKKWQ-GRA-V-IT------------ 741 (924)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCeEEEccccc---------CCcCcEEEEcCccccccc-hhh-h-hh------------
Confidence 99999999888999999999999988765321 112233333332111000 000 0 00
Q ss_pred EEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCc-chhhhcCCCCeEEEEeCCHHHH
Q 002879 659 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVNL 737 (871)
Q Consensus 659 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ILvVdDn~~n~ 737 (871)
+........ ........+.++.....+...+.+...............+. ........+.+|||||||+.++
T Consensus 742 -~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~ 814 (924)
T PRK10841 742 -FCRRHIGIP------LEIAPGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMMILVVDDHPINR 814 (924)
T ss_pred -hhhccccCh------hhcccCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCEEEEECCCHHHH
Confidence 000000000 00011123455666666666666555332211111110000 0011122457999999999999
Q ss_pred HHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCC
Q 002879 738 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 817 (871)
Q Consensus 738 ~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 817 (871)
..++.+|++.||.|.++.||.+|++.+. .+.||+||||++||+|||+++++.||+. .
T Consensus 815 ~~l~~~L~~~G~~v~~a~~g~eal~~l~-~~~~DlVl~D~~mP~mdG~el~~~ir~~----------------------~ 871 (924)
T PRK10841 815 RLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLTDVNMPNMDGYRLTQRLRQL----------------------G 871 (924)
T ss_pred HHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhc----------------------C
Confidence 9999999999999999999999999985 5679999999999999999999999974 2
Q ss_pred CCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 818 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 818 ~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+|||++|++...+...+|+++||++|+.||++.++|...+.++...
T Consensus 872 ~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 872 LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999987653
No 3
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-63 Score=600.11 Aligned_cols=767 Identities=33% Similarity=0.385 Sum_probs=557.4
Q ss_pred CceeeeEeecCCCceEEeeccCCChhchHHHHHHHhcCCceeeccccccccCCceEEEEEeeecCCCCCCCChhHHH-Hh
Q 002879 63 EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERI-EA 141 (871)
Q Consensus 63 ~~y~pv~~~~~~~~~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~-~~ 141 (871)
.+|.|+++...+..+...+|...+.+.+.+...++-++..+++.++....++..+...++-++...++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999999999999999999999999999999999998887777777777777766555554444443 23
Q ss_pred hcceeeeecchHHHHHHHHHHhhccCcEEEEEeecCCCCCceecccCccCCCcceeeeeccCCCcccccceeee--eccc
Q 002879 142 TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR--FKQK 219 (871)
Q Consensus 142 ~~g~~~~~~~v~~l~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 219 (871)
...+-...++...+....++....+......++..........+|+........+++....+..+.+.+...++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 23444555666666555555555555555555555444444556777666666677777677777666767666 3334
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhhhhhHHHHHHHHH
Q 002879 220 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 297 (871)
Q Consensus 220 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~e~a~~aks~--fla~iSHElRTPL~~I~g~~ 297 (871)
..+.+.++..............+.......|...++.....+.+.....+++...+++ |+++++|||||||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 4455555555544444444455566667777777777777777777778888888888 999999999999999 888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeC
Q 002879 298 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 377 (871)
Q Consensus 298 ~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~ 377 (871)
..+.++..+.+++.|....+.++..++.++|+++|.+++++|.+++...+|+++.+++.+++.+...+..++..+....+
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 002879 378 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 457 (871)
Q Consensus 378 ~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (871)
...|..+.+|+.+++||+.|+++||+|||..|++.+++++.+.......+.... ....+..+.........|.
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~-~~e~~~~~~~~~~~~~~~~------ 394 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRA-KEEAHMAGKARIDFLQKMS------ 394 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhh-hhhhhhccchhhhHHHHhc------
Confidence 999999999999999999999999999999999999998876543322111000 0000000000000000000
Q ss_pred CCCCCCC---CCCCCCCceeEEEEEEecCCCCChhhHhh-hcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEE
Q 002879 458 QDGSTSP---FKSSSADLINLIVSVEDTGQGIPLEAQSR-IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 533 (871)
Q Consensus 458 ~~~~~~~---~~~~~~~~~~l~i~V~DtG~GI~~e~~~~-iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~ 533 (871)
.+...+ ............+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|++||++++++|+|.+.+.
T Consensus 395 -~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~ 473 (786)
T KOG0519|consen 395 -HAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDI 473 (786)
T ss_pred -cccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhh
Confidence 000000 00001112345688999999999999999 9999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHH
Q 002879 534 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 613 (871)
Q Consensus 534 S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~ 613 (871)
+....|++|+|++++.............. .......+.|..+.+.+....+..+.....+..|+.++...+...++
T Consensus 474 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~ 549 (786)
T KOG0519|consen 474 SCISLGKTFSFTLDLLTNLPKSVVGDEKR----LFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAF 549 (786)
T ss_pred hhhccCceeeEEEEeccCCCccchhhhhh----hhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhh
Confidence 99999999999999977654432111111 12334567777777777777776677777788888888876544444
Q ss_pred HHHhcCCCc-ceEEEeeccccccCc---chhHHHHHHhhhcCCC-CCceEEEEeccCCccccCcCCCCCCCCceeecCCc
Q 002879 614 SQIASGSKI-INMILVEQEVWEKDT---SVSTLFVNNLRKLGCG-FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 688 (871)
Q Consensus 614 ~~~~~~~~~-~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~ 688 (871)
-........ ...+.++...|.... +....+....+..... .....+.++.+...........+........+|..
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (786)
T KOG0519|consen 550 WFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSP 629 (786)
T ss_pred hhcccccccchheEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccchhhHHhhhcccccccccccCCccH
Confidence 332222222 445556666664333 1111111111111111 01223333332222222222222222344556677
Q ss_pred hHHHHHHHHHHhcCC-CCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCC
Q 002879 689 SSMLAASLQRAMGVG-NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 767 (871)
Q Consensus 689 ~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~ 767 (871)
...+..+.+..++.. ..........+.......+.|++|||||||.+|+++++.+|+++|++++++.+|.||+++++++
T Consensus 630 s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~ 709 (786)
T KOG0519|consen 630 SLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPP 709 (786)
T ss_pred HHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCC
Confidence 777777777666542 2222121222222255677899999999999999999999999999999999999999999878
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 768 HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 768 ~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+.||+||||+|||+|||+|++++||+.+ .+++|||||||+++++..++|+++|||+||+
T Consensus 710 ~~y~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~ 768 (786)
T KOG0519|consen 710 HSYDVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVALTADADPSTEEECLEVGMDGYLS 768 (786)
T ss_pred CcccEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEEEecCCcHHHHHHHHHhCCceEEc
Confidence 9999999999999999999999999854 2689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhCC
Q 002879 848 KPFEAEQLYREVSRFFP 864 (871)
Q Consensus 848 KP~~~~~L~~~l~~~~~ 864 (871)
|||+.+.|..++.+|+.
T Consensus 769 KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 769 KPFTLEKLVKILREFLL 785 (786)
T ss_pred ccccHHHHHHHHHHHhc
Confidence 99999999999999875
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=4.9e-56 Score=561.61 Aligned_cols=369 Identities=39% Similarity=0.636 Sum_probs=325.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeE
Q 002879 265 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 344 (871)
Q Consensus 265 ~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~ 344 (871)
+.++++++++|++|+++|||||||||++|+|++++|.+..+++++++|++.+..++++|..+++++|+++|+|.+.+.++
T Consensus 454 ~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~~ 533 (968)
T TIGR02956 454 RAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSIS 533 (968)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeee
Confidence 34556777889999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccc
Q 002879 345 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 424 (871)
Q Consensus 345 ~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 424 (871)
..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...++
T Consensus 534 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~---- 609 (968)
T TIGR02956 534 PRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD---- 609 (968)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998888754211
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCC
Q 002879 425 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 504 (871)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s 504 (871)
..+.|+|+|+|+|||++.+++||+||++.+
T Consensus 610 ------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-- 639 (968)
T TIGR02956 610 ------------------------------------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQAD-- 639 (968)
T ss_pred ------------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhccC--
Confidence 117899999999999999999999999987
Q ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCC
Q 002879 505 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 584 (871)
Q Consensus 505 ~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vd~ 584 (871)
..+..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+......... .
T Consensus 640 ~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~--------------~------------ 693 (968)
T TIGR02956 640 GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDS--------------A------------ 693 (968)
T ss_pred CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccc--------------c------------
Confidence 34566899999999999999999999999999999999999998532110000 0
Q ss_pred chhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEEEecc
Q 002879 585 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 664 (871)
Q Consensus 585 ~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 664 (871)
.
T Consensus 694 -----------------------------------------------------------------------~-------- 694 (968)
T TIGR02956 694 -----------------------------------------------------------------------T-------- 694 (968)
T ss_pred -----------------------------------------------------------------------c--------
Confidence 0
Q ss_pred CCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHHHHHHHH
Q 002879 665 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 744 (871)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L 744 (871)
.. .....+.+|||||||+.++..+..+|
T Consensus 695 ---------~~-------------------------------------------~~~~~~~~iLvvdd~~~~~~~l~~~L 722 (968)
T TIGR02956 695 ---------LT-------------------------------------------VIDLPPQRVLLVEDNEVNQMVAQGFL 722 (968)
T ss_pred ---------cc-------------------------------------------cccccccceEEEcCcHHHHHHHHHHH
Confidence 00 00012348999999999999999999
Q ss_pred HHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEE
Q 002879 745 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 824 (871)
Q Consensus 745 ~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa 824 (871)
+..|+.|.++.+|.+|++.+. ...||+||||++||+|||+++++.||+..+ ...++|||+
T Consensus 723 ~~~g~~v~~~~~~~~a~~~l~-~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~-------------------~~~~~pii~ 782 (968)
T TIGR02956 723 TRLGHKVTLAESGQSALECFH-QHAFDLALLDINLPDGDGVTLLQQLRAIYG-------------------AKNEVKFIA 782 (968)
T ss_pred HHcCCEEEEECCHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHHHhCcc-------------------ccCCCeEEE
Confidence 999999999999999999995 478999999999999999999999997432 112389999
Q ss_pred EccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 825 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 825 lTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
+|++...+...+|+++||++|+.||++.++|...+.+++.
T Consensus 783 lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 783 FSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999874
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=3e-56 Score=550.29 Aligned_cols=371 Identities=33% Similarity=0.533 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeE
Q 002879 265 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 344 (871)
Q Consensus 265 ~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~ 344 (871)
+++++.++++|++|+++|||||||||++|.|+++++.++..++++++|++.+..++++|..+++++++++|++.+++.+.
T Consensus 273 e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 352 (779)
T PRK11091 273 QDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLD 352 (779)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEE
Confidence 34455667789999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccc
Q 002879 345 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 424 (871)
Q Consensus 345 ~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 424 (871)
..++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+||++.|.|.|.+....
T Consensus 353 ~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~----- 427 (779)
T PRK11091 353 NQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE----- 427 (779)
T ss_pred eeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc-----
Confidence 999999999999999999999999999999998888888999999999999999999999999998888775321
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccccccc-CC
Q 002879 425 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV-GP 503 (871)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~-~~ 503 (871)
...+.|+|.|||+|||++.+++||+|||++ +.
T Consensus 428 -----------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~ 460 (779)
T PRK11091 428 -----------------------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDS 460 (779)
T ss_pred -----------------------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCC
Confidence 124789999999999999999999999999 56
Q ss_pred CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeC
Q 002879 504 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 583 (871)
Q Consensus 504 s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vd 583 (871)
+.++..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+......... .
T Consensus 461 ~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~-------------~------------ 515 (779)
T PRK11091 461 HGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED-------------A------------ 515 (779)
T ss_pred CCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc-------------c------------
Confidence 666668999999999999999999999999999999999999997432110000 0
Q ss_pred CchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEEEec
Q 002879 584 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 663 (871)
Q Consensus 584 ~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 663 (871)
+
T Consensus 516 ------------------------------------------------------------------------~------- 516 (779)
T PRK11091 516 ------------------------------------------------------------------------F------- 516 (779)
T ss_pred ------------------------------------------------------------------------c-------
Confidence 0
Q ss_pred cCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHHHHHHH
Q 002879 664 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 743 (871)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~ 743 (871)
... .....+.+||||||++.++..+..+
T Consensus 517 ----------~~~------------------------------------------~~~~~~~~ILivdD~~~~~~~l~~~ 544 (779)
T PRK11091 517 ----------DED------------------------------------------DMPLPALNILLVEDIELNVIVARSV 544 (779)
T ss_pred ----------ccc------------------------------------------cccccccceEEEcCCHHHHHHHHHH
Confidence 000 0001235899999999999999999
Q ss_pred HHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCC-ccE
Q 002879 744 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH-VPI 822 (871)
Q Consensus 744 L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~-~pI 822 (871)
|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+..+ ..+ +||
T Consensus 545 L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~--------------------~~~~~~i 603 (779)
T PRK11091 545 LEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIARELRERYP--------------------REDLPPL 603 (779)
T ss_pred HHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHHHhccc--------------------cCCCCcE
Confidence 9999999999999999999985 578999999999999999999999997421 124 499
Q ss_pred EEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 823 LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 823 IalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
|++|++... ...+|+++||++|+.||++.++|...+.+++..
T Consensus 604 i~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 604 VALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 999998765 467899999999999999999999999998754
No 6
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=3.7e-55 Score=550.87 Aligned_cols=427 Identities=34% Similarity=0.509 Sum_probs=335.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002879 261 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 340 (871)
Q Consensus 261 ~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~ 340 (871)
+.+.+++++.++..|++|++++||||||||++|+|++++|.+...+.+++++++.+..++++|..+|+++|+++|+|.++
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~ 463 (921)
T PRK15347 384 LAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQ 463 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445566677788999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred eeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeec
Q 002879 341 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 420 (871)
Q Consensus 341 ~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~ 420 (871)
+.++..++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++...+
T Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~~- 542 (921)
T PRK15347 464 MTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRHE- 542 (921)
T ss_pred ccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEcC-
Confidence 9999999999999999999999999999999999998888888999999999999999999999999999888775311
Q ss_pred cccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccc
Q 002879 421 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 500 (871)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q 500 (871)
..+.|+|+|||+||+++.+++||+||+|
T Consensus 543 ----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 570 (921)
T PRK15347 543 ----------------------------------------------------QQLCFTVEDTGCGIDIQQQQQIFTPFYQ 570 (921)
T ss_pred ----------------------------------------------------CEEEEEEEEcCCCCCHHHHHHHhcCccc
Confidence 2478999999999999999999999998
Q ss_pred cCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEE
Q 002879 501 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 580 (871)
Q Consensus 501 ~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 580 (871)
.+. ..+|+||||+||++++++|||+|+++|.+|+||+|+|++|+....... ...+..
T Consensus 571 ~~~----~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~-----------------~~~~~~-- 627 (921)
T PRK15347 571 ADT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPE-----------------PLKGEL-- 627 (921)
T ss_pred CCC----CCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCcc-----------------cccccc--
Confidence 754 347999999999999999999999999999999999999985421110 000000
Q ss_pred EeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEE
Q 002879 581 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 660 (871)
Q Consensus 581 ~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 660 (871)
.........+..||+............
T Consensus 628 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 654 (921)
T PRK15347 628 ------SAPLALHRQLSAWGITCQPGHQNPALL----------------------------------------------- 654 (921)
T ss_pred ------cchHHHHHHHHHcCCcccccccchhhc-----------------------------------------------
Confidence 000112223444444332221000000
Q ss_pred EeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHHHH
Q 002879 661 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 740 (871)
Q Consensus 661 l~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l 740 (871)
.+.. +.-+..+...+............. ..+ ....+.+||||||++.++..+
T Consensus 655 ------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~iLivdd~~~~~~~l 706 (921)
T PRK15347 655 ------------------DPEL---AYLPGRLYDLLQQIIQGAPNEPVI--NLP-----LQPWQLQILLVDDVETNRDII 706 (921)
T ss_pred ------------------chhh---hhcchHHHHHHHHHhhcCCCcccc--cCC-----CCcccCCEEEEeCCHHHHHHH
Confidence 0000 000011111111111111000000 000 112245899999999999999
Q ss_pred HHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCc
Q 002879 741 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 820 (871)
Q Consensus 741 ~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 820 (871)
..+|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+.+.. ..+++
T Consensus 707 ~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~------------------~~~~~ 767 (921)
T PRK15347 707 GMMLVELGQQVTTAASGTEALELGR-QHRFDLVLMDIRMPGLDGLETTQLWRDDPNN------------------LDPDC 767 (921)
T ss_pred HHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhh------------------cCCCC
Confidence 9999999999999999999999985 5789999999999999999999999974311 13578
Q ss_pred cEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 821 PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 821 pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
|||++|+....+...+|+++||++|+.||++.++|..++.+..
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=2.8e-54 Score=542.26 Aligned_cols=370 Identities=33% Similarity=0.548 Sum_probs=323.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002879 260 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 339 (871)
Q Consensus 260 ~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g 339 (871)
+..+.+.+++++.++|++|+++|||||||||++|.|++++|.+...++.++++++.+..++++|..+|++++++++++.|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~ 508 (914)
T PRK11466 429 EHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG 508 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445566777888999999999999999999999999999988888889999999999999999999999999999988
Q ss_pred C--eeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEE
Q 002879 340 K--LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 417 (871)
Q Consensus 340 ~--~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~ 417 (871)
. +.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+..
T Consensus 509 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~ 588 (914)
T PRK11466 509 GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRT 588 (914)
T ss_pred CCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEE
Confidence 4 56777899999999999999999999999999999988888889999999999999999999999999998887643
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccc
Q 002879 418 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 497 (871)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 497 (871)
. ...+.|.|.|||+|||++.++++|+|
T Consensus 589 ~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~ 615 (914)
T PRK11466 589 D-----------------------------------------------------GEQWLVEVEDSGCGIDPAKLAEIFQP 615 (914)
T ss_pred c-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHHhch
Confidence 1 12477999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCc
Q 002879 498 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 577 (871)
Q Consensus 498 F~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 577 (871)
|++.+ ...+|+||||+|||++++.|||+|.+.|.+|+||+|+|++|+.........
T Consensus 616 f~~~~----~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~-------------------- 671 (914)
T PRK11466 616 FVQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPK-------------------- 671 (914)
T ss_pred hhcCC----CCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccccc--------------------
Confidence 99863 245799999999999999999999999999999999999997432100000
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
.+
T Consensus 672 -----------------------------------------------------------------------------~~- 673 (914)
T PRK11466 672 -----------------------------------------------------------------------------TV- 673 (914)
T ss_pred -----------------------------------------------------------------------------cc-
Confidence 00
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHH
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 737 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~ 737 (871)
.. .....+++|||||||+.++
T Consensus 674 ----------------~~-------------------------------------------~~~~~~~~vLivdD~~~~~ 694 (914)
T PRK11466 674 ----------------NQ-------------------------------------------AVRLDGLRLLLIEDNPLTQ 694 (914)
T ss_pred ----------------cc-------------------------------------------ccccCCcceEEEeCCHHHH
Confidence 00 0001245899999999999
Q ss_pred HHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCC
Q 002879 738 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 817 (871)
Q Consensus 738 ~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 817 (871)
..+..+|+..|+.|.++.+|.+|++.+...+.||+||||++||+|||++++++||+. .
T Consensus 695 ~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~----------------------~ 752 (914)
T PRK11466 695 RITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ----------------------Y 752 (914)
T ss_pred HHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhh----------------------C
Confidence 999999999999999999999999987544679999999999999999999999973 3
Q ss_pred CCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 818 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 818 ~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
+++|||++|++...+...+|+++|++||+.||++.++|...|.+++..
T Consensus 753 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 753 PSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred CCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 468999999999999999999999999999999999999999998753
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=1.2e-49 Score=513.39 Aligned_cols=382 Identities=31% Similarity=0.475 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 256 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT-QQDYVRTAQASGKALVSLINEVLDQA 334 (871)
Q Consensus 256 ~~~~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~-~~~~l~~i~~~~~~L~~lIndlLd~s 334 (871)
+..+++++.+++++++..+|.+|+++|||||||||++|.|++++|.+...+.+ ..++++.+..++++|..+|+++++++
T Consensus 693 ~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~ 772 (1197)
T PRK09959 693 DLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVD 772 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666677778899999999999999999999999999976655544 45789999999999999999999999
Q ss_pred HhhcCCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEE
Q 002879 335 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 414 (871)
Q Consensus 335 kie~g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~ 414 (871)
+++++...+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|+||+.||++||+||++.|.+.+.
T Consensus 773 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~ 852 (1197)
T PRK09959 773 KIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKIT 852 (1197)
T ss_pred HhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999999999999999999998876543334468899999999999999999999999987776
Q ss_pred EEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhh
Q 002879 415 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 494 (871)
Q Consensus 415 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~i 494 (871)
+..... ..+...+.|+|.|+|+|||++.+++|
T Consensus 853 ~~~~~~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~i 884 (1197)
T PRK09959 853 TSLGHI------------------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQL 884 (1197)
T ss_pred EEEeee------------------------------------------------cCCceEEEEEEEEcCCCCCHHHHHHh
Confidence 643210 01123478999999999999999999
Q ss_pred cccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCccc
Q 002879 495 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 574 (871)
Q Consensus 495 F~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (871)
|+||++.+. .+..+|+||||+|||+|++.|||+|+++|.+|+||+|+|++|+......... .
T Consensus 885 F~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~-------------~--- 946 (1197)
T PRK09959 885 FKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATV-------------E--- 946 (1197)
T ss_pred hcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhccc-------------c---
Confidence 999998643 3455799999999999999999999999999999999999997421100000 0
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
T Consensus 947 -------------------------------------------------------------------------------- 946 (1197)
T PRK09959 947 -------------------------------------------------------------------------------- 946 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCH
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 734 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~ 734 (871)
. ... .| .....+.+||||||++
T Consensus 947 -~-----------------~~~--------~~--------------------------------~~~~~~~~iLivdd~~ 968 (1197)
T PRK09959 947 -A-----------------KAE--------QP--------------------------------ITLPEKLSILIADDHP 968 (1197)
T ss_pred -c-----------------ccc--------cc--------------------------------cccccCceEEEcCCCH
Confidence 0 000 00 0001135899999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhcc
Q 002879 735 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 814 (871)
Q Consensus 735 ~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~ 814 (871)
.++..+..+|+..|+.|.++.+|.+|++.+. .+.||+||+|++||+|||+++++.||+.
T Consensus 969 ~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i~~~-------------------- 1027 (1197)
T PRK09959 969 TNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKLREQ-------------------- 1027 (1197)
T ss_pred HHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc--------------------
Confidence 9999999999999999999999999999985 5789999999999999999999999963
Q ss_pred CCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 815 VSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 815 ~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+....+...+|+++||++||.||++.++|...|.++..
T Consensus 1028 --~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1028 --NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred --CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 246899999999999999999999999999999999999999987653
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=3.3e-47 Score=464.99 Aligned_cols=240 Identities=20% Similarity=0.321 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002879 259 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 338 (871)
Q Consensus 259 ~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~ 338 (871)
+++.+++++++++.++|++|+++|||||||||++|.|++++|.+...+++++++++.+..++++|..+|+++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666777888889999999999999999999999999999988777888899999999999999999999999999999
Q ss_pred CCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEe
Q 002879 339 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 418 (871)
Q Consensus 339 g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 418 (871)
|+..++..+|++.+++++++..+...+..|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999888766677899999999999999999999999999988877532
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccc
Q 002879 419 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 498 (871)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 498 (871)
.. ....+.|+|.|||+|||++.+++||+||
T Consensus 594 ~~--------------------------------------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF 623 (894)
T PRK10618 594 ES--------------------------------------------------SPDRLTIRILDTGAGVSIKELDNLHFPF 623 (894)
T ss_pred cC--------------------------------------------------CCcEEEEEEEECCCCCCHHHHHHhcCcc
Confidence 11 1135789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 499 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 499 ~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
++.+. ..+..+|+||||+|||+||++|||+|+++|.+|+||+|+|++|+.
T Consensus 624 ~t~~~-~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 624 LNQTQ-GDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred ccCCC-CCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 98643 234567999999999999999999999999999999999999974
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=2.1e-44 Score=445.83 Aligned_cols=364 Identities=19% Similarity=0.280 Sum_probs=292.3
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHH
Q 002879 273 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDT-ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 351 (871)
Q Consensus 273 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~-~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~ 351 (871)
.+..+|++++||||||||++|.|+++++.+. ......+++++.+..+++++..+|++++++++...+. ..++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~----~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGERN----TKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CcEEcHH
Confidence 3567899999999999999999999987654 3345678899999999999999999999999965543 4679999
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC-CCeEEEEEEEeeccccchhhhhh
Q 002879 352 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETE 430 (871)
Q Consensus 352 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~ 430 (871)
+++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++ .|.|.|++..........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~----- 596 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV----- 596 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc-----
Confidence 9999999988753 45788888877654 447899999999999999999999985 567777775432100000
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCC
Q 002879 431 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 510 (871)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 510 (871)
. ......+...+.|+|+|+|+|||++.+++||+||++.+. +
T Consensus 597 -------~--------------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~ 637 (828)
T PRK13837 597 -------L--------------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------G 637 (828)
T ss_pred -------c--------------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------C
Confidence 0 000011234688999999999999999999999996422 7
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchhhhH
Q 002879 511 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAK 590 (871)
Q Consensus 511 GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vd~~~~~~~ 590 (871)
|+||||+|||++++.|||+|+++|.+|+||+|+|++|.......... .
T Consensus 638 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~-----------~--------------------- 685 (828)
T PRK13837 638 GTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQ-----------A--------------------- 685 (828)
T ss_pred CCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCcc-----------c---------------------
Confidence 99999999999999999999999999999999999997432110000 0
Q ss_pred HHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEEEeccCCcccc
Q 002879 591 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 670 (871)
Q Consensus 591 v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 670 (871)
T Consensus 686 -------------------------------------------------------------------------------- 685 (828)
T PRK13837 686 -------------------------------------------------------------------------------- 685 (828)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHHHHHHHHHHcCCE
Q 002879 671 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 750 (871)
Q Consensus 671 ~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~ 750 (871)
... | . ......+.+|||||||+.++..+...|...||.
T Consensus 686 --~~~----------~------------------~------------~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~ 723 (828)
T PRK13837 686 --FFG----------P------------------G------------PLPRGRGETVLLVEPDDATLERYEEKLAALGYE 723 (828)
T ss_pred --cCC----------C------------------c------------ccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCE
Confidence 000 0 0 000012458999999999999999999999999
Q ss_pred EEEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 751 VVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 751 v~~a~~g~eAl~~l~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
++.+.++.+|++.+... ..||+||+ .||.|+|+++++.|+.. .+.+|||++|+..
T Consensus 724 v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~----------------------~~~ipIIvls~~~ 779 (828)
T PRK13837 724 PVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAA----------------------APTLPIILGGNSK 779 (828)
T ss_pred EEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhh----------------------CCCCCEEEEeCCC
Confidence 99999999999988432 34899999 79999999999999863 3468999999999
Q ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 830 IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
......+++.+| ++||.||++.++|..+|.+++..
T Consensus 780 ~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 780 TMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred chhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999 99999999999999999988763
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-42 Score=355.53 Aligned_cols=226 Identities=27% Similarity=0.477 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEee
Q 002879 271 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT--QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 348 (871)
Q Consensus 271 a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~--~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~ 348 (871)
.++.+..|+|++||||||||+++.++++.|.+...... ...++..-+...++|.+||||+|.+||+.....+++.+-+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34567789999999999999999999999988765443 5789999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCE-EEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEEeeccccchh
Q 002879 349 NLRAILDDVLSLFSGKSQDKGVE-LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIE 426 (871)
Q Consensus 349 ~l~~ll~~v~~~~~~~a~~k~i~-l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~ 426 (871)
|+...+..++..|.....+..+. +.-.+ +.-+.++..|+.++-||+.|+++||+||++. |.|++.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998775544443 33333 3456788899999999999999999999976 5677766431
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCC
Q 002879 427 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 506 (871)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~ 506 (871)
..++.|+|.|.|.|||++++++||++||++|..++
T Consensus 372 ---------------------------------------------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARs 406 (459)
T COG5002 372 ---------------------------------------------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARS 406 (459)
T ss_pred ---------------------------------------------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhh
Confidence 13588999999999999999999999999999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 507 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 507 ~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
|..|||||||+|+|.+|+.|||.||.+|..|+||+|+|+||+..
T Consensus 407 R~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 407 RKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred hcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccC
Confidence 99999999999999999999999999999999999999999864
No 12
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=9.1e-38 Score=369.34 Aligned_cols=368 Identities=20% Similarity=0.240 Sum_probs=285.6
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEee
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-----LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 348 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~-----l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~ 348 (871)
...++++.++||+||||+.|.|+++++.... ......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3457899999999999999999999875321 223456788899999999999999999998743 3445678
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEEeeccccchhh
Q 002879 349 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEV 427 (871)
Q Consensus 349 ~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~ 427 (871)
++..+++.+...+.. ...+++.+.+.+++..+ .+.+|+.++.||+.||++||+||+.. |.|.|.+........
T Consensus 238 ~l~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAER-TLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHHH-hcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 999999988776653 34577888777666554 47789999999999999999999865 445444432110000
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCC
Q 002879 428 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 507 (871)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~ 507 (871)
....| ....+...+.|+|.|+|+|||++.++++|+||++.+ .
T Consensus 312 ------------------~~~~~----------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~----~ 353 (540)
T PRK13557 312 ------------------DLAMY----------------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTK----E 353 (540)
T ss_pred ------------------ccccc----------------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccC----C
Confidence 00000 001122457899999999999999999999999753 2
Q ss_pred CCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchh
Q 002879 508 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 587 (871)
Q Consensus 508 ~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vd~~~~ 587 (871)
..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|......... +.
T Consensus 354 ~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~--------------~~--------------- 404 (540)
T PRK13557 354 EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE--------------QE--------------- 404 (540)
T ss_pred CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC--------------CC---------------
Confidence 3469999999999999999999999999999999999998743110000 00
Q ss_pred hhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEEEeccCCc
Q 002879 588 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 667 (871)
Q Consensus 588 ~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 667 (871)
T Consensus 405 -------------------------------------------------------------------------------- 404 (540)
T PRK13557 405 -------------------------------------------------------------------------------- 404 (540)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHHHHHHHHHHc
Q 002879 668 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 747 (871)
Q Consensus 668 ~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L~~~ 747 (871)
.... ......+++||||||++..+..+..+|+..
T Consensus 405 -----~~~~-----------------------------------------~~~~~~~~~iliv~~~~~~~~~l~~~l~~~ 438 (540)
T PRK13557 405 -----PKAR-----------------------------------------AIDRGGTETILIVDDRPDVAELARMILEDF 438 (540)
T ss_pred -----CCCc-----------------------------------------ccccCCCceEEEEcCcHHHHHHHHHHHHhc
Confidence 0000 000112468999999999999999999999
Q ss_pred CCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEc
Q 002879 748 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 826 (871)
Q Consensus 748 g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 826 (871)
|+.+..+.++.+|++.+.....||+|++|..||. ++|+++++.||+. .+.+|||++|
T Consensus 439 ~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~----------------------~~~~~ii~~~ 496 (540)
T PRK13557 439 GYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRR----------------------QPKIKVLLTT 496 (540)
T ss_pred CCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHh----------------------CCCCcEEEEc
Confidence 9999999999999998853346999999999997 9999999999973 2468999999
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 827 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 827 a~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
..........++..|+++|+.||++.++|...+.+.....
T Consensus 497 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 536 (540)
T PRK13557 497 GYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGP 536 (540)
T ss_pred CCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCC
Confidence 9988888888999999999999999999999999877643
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.6e-37 Score=349.62 Aligned_cols=244 Identities=25% Similarity=0.382 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHH
Q 002879 252 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-------VTQQDYVRTAQASGKALV 324 (871)
Q Consensus 252 ~~~~~~~~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-------~~~~~~l~~i~~~~~~L~ 324 (871)
.++.+....+.+.++++++..+++.+|++++||||||||++|.+++++|.+...+ +..+++++.+..+.++|.
T Consensus 128 ~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (380)
T PRK09303 128 LQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIE 207 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666777899999999999999999999999999754332 236778899999999999
Q ss_pred HHHHHHHHHHHhhcCCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhc
Q 002879 325 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 404 (871)
Q Consensus 325 ~lIndlLd~skie~g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiK 404 (871)
.++++++++++.+.+...++..++|+.+++++++..+...+..+++.+.+.+++..| .+.+|+.+|+||+.||++||+|
T Consensus 208 ~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik 286 (380)
T PRK09303 208 RLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIK 286 (380)
T ss_pred HHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999877766 5889999999999999999999
Q ss_pred cCCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecC
Q 002879 405 FTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 483 (871)
Q Consensus 405 fT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 483 (871)
|++. |.|.|.+... +...+.|+|.|+|
T Consensus 287 ~~~~~~~I~i~~~~~----------------------------------------------------~~~~v~i~V~D~G 314 (380)
T PRK09303 287 YTPEGGTITLSMLHR----------------------------------------------------TTQKVQVSICDTG 314 (380)
T ss_pred cCCCCceEEEEEEec----------------------------------------------------CCCEEEEEEEEcC
Confidence 9976 5665554211 1124789999999
Q ss_pred CCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 484 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 484 ~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
+|||++.+++||+|||+.+. ++..+|+||||+|||++++.|||+|+++|.+++||+|+|++|..+
T Consensus 315 ~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 379 (380)
T PRK09303 315 PGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVYR 379 (380)
T ss_pred CCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecCC
Confidence 99999999999999998765 445679999999999999999999999999999999999999743
No 14
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=355.43 Aligned_cols=225 Identities=24% Similarity=0.429 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEe
Q 002879 269 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVT-QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 345 (871)
Q Consensus 269 e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~-~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~ 345 (871)
.+.++.++.||+++||||||||++|.|.++.|... .++++ +.+.+..|...+++|..+|++|||++|+++|.+.++.
T Consensus 654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~ 733 (890)
T COG2205 654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKL 733 (890)
T ss_pred HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccc
Confidence 34567789999999999999999999999998764 34544 7789999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCe-EEEEEEEeeccccc
Q 002879 346 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLVEEVVDS 424 (871)
Q Consensus 346 ~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~ 424 (871)
.+..+.+++.+++........... +.+.+++++| .+.+|...|.|||.|||+||+||++.|. |.|.++...
T Consensus 734 ~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~----- 805 (890)
T COG2205 734 DWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER----- 805 (890)
T ss_pred chhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec-----
Confidence 999999999999998776655444 5666777776 6889999999999999999999998875 777775422
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCC
Q 002879 425 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 504 (871)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s 504 (871)
.+++|+|.|+|+|||++++++||++||+.+..
T Consensus 806 ------------------------------------------------~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~ 837 (890)
T COG2205 806 ------------------------------------------------ENVVFSVIDEGPGIPEGELERIFDKFYRGNKE 837 (890)
T ss_pred ------------------------------------------------ceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC
Confidence 36889999999999999999999999998763
Q ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 002879 505 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 551 (871)
Q Consensus 505 ~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~ 551 (871)
.. ..|+||||||||.||+.|||+|++.+.+++|++|+|++|....
T Consensus 838 ~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 838 SA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred CC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 33 6799999999999999999999999999999999999998643
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=7.5e-34 Score=327.19 Aligned_cols=221 Identities=26% Similarity=0.382 Sum_probs=190.6
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHH
Q 002879 273 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 351 (871)
Q Consensus 273 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~ 351 (871)
+++.+|++++||||||||++|.|+++++.+... ++...++++.+..++++|..++++++++++++.+........+++.
T Consensus 202 ~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~ 281 (430)
T PRK11006 202 GARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVP 281 (430)
T ss_pred HHHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHH
Confidence 356689999999999999999999999876543 3456788999999999999999999999999998877667789999
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC-eEEEEEEEeeccccchhhhhh
Q 002879 352 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETE 430 (871)
Q Consensus 352 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~~~~ 430 (871)
.+++.+...+...+ .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 282 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------ 346 (430)
T PRK11006 282 MMLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------ 346 (430)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc------------
Confidence 99998877776555 67788888776654 478999999999999999999999764 566654321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCC
Q 002879 431 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 510 (871)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 510 (871)
...+.|+|+|+|+|||++.++++|+|||+.+.+.++..+
T Consensus 347 -----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 385 (430)
T PRK11006 347 -----------------------------------------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTG 385 (430)
T ss_pred -----------------------------------------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCC
Confidence 124679999999999999999999999998887777788
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 511 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 511 GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
|+||||+|||++++.|||+|+++|.+|+||+|+|++|..
T Consensus 386 G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 386 GSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 999999999999999999999999999999999999864
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=8.4e-33 Score=318.57 Aligned_cols=229 Identities=25% Similarity=0.374 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002879 260 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 339 (871)
Q Consensus 260 ~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g 339 (871)
.++++..+.++..+.+.+|++++||||||||+.|.+.++++.+. +..+. +.+.+..++|..++++++.+++++.+
T Consensus 197 ~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~ 271 (433)
T PRK10604 197 AFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARLDRP 271 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455566666677788999999999999999999999988632 22222 23777889999999999999999999
Q ss_pred CeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEee
Q 002879 340 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 419 (871)
Q Consensus 340 ~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 419 (871)
...+...++++.+++++++..+......+++++.+..+ +..+.+|+..+++|+.||++||+||+. |.|.|++...+
T Consensus 272 ~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~ 347 (433)
T PRK10604 272 QNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG 347 (433)
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC
Confidence 98888899999999999999998888777777765322 335678999999999999999999995 77777765321
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccccc
Q 002879 420 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 499 (871)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 499 (871)
..+.|+|+|+|+|||++.+++||+||+
T Consensus 348 -----------------------------------------------------~~~~I~V~D~G~Gi~~e~~~~if~~f~ 374 (433)
T PRK10604 348 -----------------------------------------------------NQACLIVEDDGPGIPPEERERVFEPFV 374 (433)
T ss_pred -----------------------------------------------------CEEEEEEEEcCCCCCHHHHhhcCCCCc
Confidence 247899999999999999999999999
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 500 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 500 q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
+.+.++++..+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 375 r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 375 RLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred cCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 998887777889999999999999999999999999999999999999754
No 17
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=8.3e-32 Score=313.59 Aligned_cols=221 Identities=21% Similarity=0.298 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEe
Q 002879 267 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 345 (871)
Q Consensus 267 ~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~-l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~ 345 (871)
+.++..+...+|++++||||||||+.|.++++.|.+.. .+. .+....+.....++..+++++++.++.+++...+..
T Consensus 258 ~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~--~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~ 335 (485)
T PRK10815 258 NERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSV--EQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSR 335 (485)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc
Confidence 33444445568999999999999999999999887654 222 233456777888999999999999999999888888
Q ss_pred EeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccch
Q 002879 346 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 425 (871)
Q Consensus 346 ~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~ 425 (871)
..+++..+++++++.+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||+.+ .|.|++...
T Consensus 336 ~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~------- 405 (485)
T PRK10815 336 ELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT------- 405 (485)
T ss_pred ceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe-------
Confidence 89999999999999999999999999998876543 57799999999999999999999965 355554321
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC
Q 002879 426 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 505 (871)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~ 505 (871)
...+.|+|+|+|+|||++.+++||+||++.+.+
T Consensus 406 ----------------------------------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~- 438 (485)
T PRK10815 406 ----------------------------------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADTL- 438 (485)
T ss_pred ----------------------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC-
Confidence 124789999999999999999999999986532
Q ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 506 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 506 ~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
.+|+||||+|||++++.|||+|.++|.+++||+|++++|..
T Consensus 439 ---~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 439 ---RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred ---CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 35999999999999999999999999999999999999864
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=100.00 E-value=9.4e-32 Score=313.63 Aligned_cols=215 Identities=21% Similarity=0.289 Sum_probs=167.1
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 353 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~l 353 (871)
...++++.++|||||||++|.|++++|.+...+.........+......+..++..+.++. .........++|+.++
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~dl~~~ 351 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVI---PQSPQEIVVPVNLNQI 351 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhh---ccCcccccccccHHHH
Confidence 3456788899999999999999999987653332223333333333333333333333332 2233445578999999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCe-----EEEEEEEeeccccchhhh
Q 002879 354 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-----IFVTVYLVEEVVDSIEVE 428 (871)
Q Consensus 354 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-----I~v~v~~~~~~~~~~~~~ 428 (871)
+++++..+...+..+++.+.+..++..| .+.+|+.+|+|||.||++||+||+..|. |.|.+..
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~----------- 419 (494)
T TIGR02938 352 LRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL----------- 419 (494)
T ss_pred HHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe-----------
Confidence 9999999999999999999988877666 5789999999999999999999986652 3333211
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCC
Q 002879 429 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 508 (871)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~ 508 (871)
+...+.|+|+|||+|||++.+++||+||++.+.. .
T Consensus 420 ------------------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---~ 454 (494)
T TIGR02938 420 ------------------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---S 454 (494)
T ss_pred ------------------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---C
Confidence 1125789999999999999999999999987543 2
Q ss_pred CCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 509 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 509 ~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
++||||||+|||.||++|||+|+++|.+|+||+|+|+||+
T Consensus 455 ~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 455 RKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred CCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 6799999999999999999999999999999999999985
No 19
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=4.6e-31 Score=306.90 Aligned_cols=236 Identities=25% Similarity=0.427 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002879 259 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 338 (871)
Q Consensus 259 ~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~ 338 (871)
+.++++..+++.....+.+|++.+|||+||||+.+.+.++.+.+... ....+.+..+....++|..++++++++++.+.
T Consensus 224 ~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~ 302 (466)
T PRK10549 224 QDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQLSLSDE 302 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555666677777788899999999999999999999999876432 23345678888889999999999999999999
Q ss_pred CCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEE
Q 002879 339 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 417 (871)
Q Consensus 339 g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~ 417 (871)
+...+...++++.+++++++..+......+++++.+.+++.. .+.+|+.++.|++.||++||+||++. |.|.|.+..
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~ 380 (466)
T PRK10549 303 GALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ 380 (466)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 999999999999999999999999999999999998876543 46799999999999999999999965 567776643
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccc
Q 002879 418 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 497 (871)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 497 (871)
.+ ..+.|.|+|+|+|||++.++++|+|
T Consensus 381 ~~-----------------------------------------------------~~~~i~V~D~G~Gi~~e~~~~lf~~ 407 (466)
T PRK10549 381 RD-----------------------------------------------------KTLRLTFADSAPGVSDEQLQKLFER 407 (466)
T ss_pred cC-----------------------------------------------------CEEEEEEEecCCCcCHHHHHHhccC
Confidence 11 2478999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 498 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 498 F~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
||+.+.+..+..+|+||||+||++++++|||++.++|.++.||+|+|.+|+..
T Consensus 408 ~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 408 FYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred cccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 99998776677789999999999999999999999999999999999999754
No 20
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=6.3e-31 Score=325.17 Aligned_cols=223 Identities=22% Similarity=0.353 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEe
Q 002879 270 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE--LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 347 (871)
Q Consensus 270 ~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~--l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~ 347 (871)
+.++.|.+|++.+||||||||++|.|+++++.... ......++++.+.....++..+++++++++++++|.+.++..+
T Consensus 659 e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~ 738 (895)
T PRK10490 659 EREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEW 738 (895)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Confidence 34567789999999999999999999999886432 1223446788899999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC-eEEEEEEEeeccccchh
Q 002879 348 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 426 (871)
Q Consensus 348 ~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~ 426 (871)
+++.+++++++..+......+++.+. +++..| .+.+|+.+|.||+.||++||+||++.| .|.|++...
T Consensus 739 ~~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~-------- 807 (895)
T PRK10490 739 LTLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE-------- 807 (895)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe--------
Confidence 99999999999999888777766654 455544 688999999999999999999999765 566655321
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCC
Q 002879 427 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 506 (871)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~ 506 (871)
...+.|+|.|+|+|||++.+++||+||++.+..
T Consensus 808 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~-- 840 (895)
T PRK10490 808 ---------------------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE-- 840 (895)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--
Confidence 124789999999999999999999999986542
Q ss_pred CCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 507 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 507 ~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
+..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 841 ~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 841 SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 34569999999999999999999999999999999999999853
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=99.98 E-value=3.3e-30 Score=299.24 Aligned_cols=213 Identities=26% Similarity=0.438 Sum_probs=183.6
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 352 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~-l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ 352 (871)
+..+|.+++||||||||++|.|+++++.+.. ...+.+++++.+....+++..++++++++++.. .....++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567999999999999999999999987643 335567888999999999999999999999843 34556899999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC-CCeEEEEEEEeeccccchhhhhhh
Q 002879 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 431 (871)
Q Consensus 353 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~ 431 (871)
++++++..+...+..+++.+.+..++..+ .+.+|+.+|.|++.||++||+||+. .|.|.|.+...+
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~------------ 378 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESG------------ 378 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeC------------
Confidence 99999999999999999999998876554 5778999999999999999999975 466766654211
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCc
Q 002879 432 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 511 (871)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G 511 (871)
..+.|+|+|+|+|||++.++++|++|++. +.+|
T Consensus 379 -----------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------k~~g 411 (457)
T PRK10364 379 -----------------------------------------AGVKISVTDSGKGIAADQLEAIFTPYFTT------KAEG 411 (457)
T ss_pred -----------------------------------------CeEEEEEEECCCCCCHHHHHHHhCccccC------CCCC
Confidence 23789999999999999999999999853 2468
Q ss_pred ccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 512 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 512 tGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
+||||+|||++++.|||+|+++|.+++||+|++++|...
T Consensus 412 ~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 412 TGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred CcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 999999999999999999999999999999999999853
No 22
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.98 E-value=3.6e-30 Score=288.99 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002879 260 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 339 (871)
Q Consensus 260 ~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g 339 (871)
.+.++..+.+...+.+.+|++++||||||||++|.+.++++.+... . ..+.+....+++..++++++++++.+..
T Consensus 122 ~~n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~ 196 (356)
T PRK10755 122 ALNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQS 196 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3444455555556666789999999999999999999998765422 1 2334455677899999999999998876
Q ss_pred CeeeEeEeecH-HHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEE
Q 002879 340 KLELEAVSFNL-RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 417 (871)
Q Consensus 340 ~~~l~~~~~~l-~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~ 417 (871)
........+++ .+++..++..+...+..+++.+.+...+ .+..+.+|+..+++|+.||++||+||++. |.|.|++..
T Consensus 197 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~ 275 (356)
T PRK10755 197 FSSGHYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQ 275 (356)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 66666667888 9999999888988888899888764222 34568899999999999999999999965 456666532
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccc
Q 002879 418 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 497 (871)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 497 (871)
. ...+.|+|+|+|+||+++.++++|+|
T Consensus 276 ~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~ 302 (356)
T PRK10755 276 E-----------------------------------------------------DGGAVLAVEDEGPGIDESKCGELSKA 302 (356)
T ss_pred c-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHhCCC
Confidence 1 12478999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEEeC
Q 002879 498 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 549 (871)
Q Consensus 498 F~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g-~Gs~F~~~lp~~ 549 (871)
|++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++++|..
T Consensus 303 f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 303 FVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred eEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 998643 357999999999999999999999999998 999999999863
No 23
>PRK09835 sensor kinase CusS; Provisional
Probab=99.98 E-value=8.9e-30 Score=297.30 Aligned_cols=232 Identities=26% Similarity=0.425 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002879 260 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVES 338 (871)
Q Consensus 260 ~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~ 338 (871)
.++++..+.+.....+.+|++++|||||||++.|.+.++.+..... ..+..+.+..+.....++..++++++++++.+.
T Consensus 247 ~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~ 326 (482)
T PRK09835 247 SFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADN 326 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556666667778899999999999999999999998765433 334556777777888999999999999999999
Q ss_pred CCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC-eEEEEEEE
Q 002879 339 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 417 (871)
Q Consensus 339 g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~ 417 (871)
+.......++++.++++++.+.+...+..+++.+.+..+ +..+.+|+.+|+||+.||++||+||+..| .|.|++..
T Consensus 327 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~ 403 (482)
T PRK09835 327 NQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQE 403 (482)
T ss_pred CCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 988888889999999999999999998899988876532 34688999999999999999999999764 47666532
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccc
Q 002879 418 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 497 (871)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 497 (871)
.+ ..+.|+|+|+|+|||++.++++|+|
T Consensus 404 ~~-----------------------------------------------------~~~~i~v~d~G~gi~~~~~~~if~~ 430 (482)
T PRK09835 404 VD-----------------------------------------------------HQVQLVVENPGTPIAPEHLPRLFDR 430 (482)
T ss_pred eC-----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCC
Confidence 11 1368999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 498 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 498 F~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
||+.+.+.++..+|+||||+||+++++.|||+|+++|.+ .||+|++++|.
T Consensus 431 f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 431 FYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred cccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 999987766667899999999999999999999999974 69999999985
No 24
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=7.1e-30 Score=308.94 Aligned_cols=231 Identities=19% Similarity=0.312 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002879 261 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 340 (871)
Q Consensus 261 ~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~ 340 (871)
++++..++++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+..+.++|..++++++++++++.+.
T Consensus 471 fn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~ 550 (703)
T TIGR03785 471 FAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAI 550 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 33444555666666778999999999999999999999998777777788899999999999999999999999999988
Q ss_pred eeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEEee
Q 002879 341 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVE 419 (871)
Q Consensus 341 ~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~ 419 (871)
...+..++|+.+++++++..+......+++.+.+.. . +..+.+|+..|.||+.||++||+||++. |.|.|++...
T Consensus 551 ~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~--~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~- 626 (703)
T TIGR03785 551 QSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPE--T-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN- 626 (703)
T ss_pred ccccceeecHHHHHHHHHHHHHHHhhcCCEEEEecC--C-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc-
Confidence 888888999999999999999988888877766543 2 2368899999999999999999999965 4566554321
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccccc
Q 002879 420 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 499 (871)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 499 (871)
...+.|+|+|+|+|||++.+++||+||+
T Consensus 627 ----------------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~ 654 (703)
T TIGR03785 627 ----------------------------------------------------KSHALLTVSNEGPPLPEDMGEQLFDSMV 654 (703)
T ss_pred ----------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCe
Confidence 1247899999999999999999999999
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEE
Q 002879 500 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 547 (871)
Q Consensus 500 q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g-~Gs~F~~~lp 547 (871)
+.+.......+|+||||+|||++++.|||+|.++|.++ .|++|+|++|
T Consensus 655 t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 655 SVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred ecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 87655555556899999999999999999999999975 8999999986
No 25
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.97 E-value=1e-30 Score=289.20 Aligned_cols=235 Identities=25% Similarity=0.408 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 259 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQAK 335 (871)
Q Consensus 259 ~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~---~l~~~~~~~l~~i~~~~~~L~~lIndlLd~sk 335 (871)
.++.++...+|+.+....+|...+||++|.||+.|.+++++|... .++.+.++++..+.+....+.+||++++.+|+
T Consensus 508 eela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~ 587 (750)
T COG4251 508 EELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSK 587 (750)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456667778888898999999999999999999999999999764 57888999999999999999999999999999
Q ss_pred hhcCCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEE
Q 002879 336 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 415 (871)
Q Consensus 336 ie~g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v 415 (871)
+..-...+. +.|+.+++++++........+.++++.+ .+ +| .+.+|+.++.|++.||+.|||||...+.-.|.|
T Consensus 588 l~~~~~~l~--~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I 661 (750)
T COG4251 588 LGLTEAPLQ--PTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEI 661 (750)
T ss_pred hccccCCCC--CcchHHHHHHHHHhcccccccccceEEe--cc-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEE
Confidence 876655554 7899999999999999999999998876 34 66 588999999999999999999998665333333
Q ss_pred EEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhc
Q 002879 416 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 495 (871)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF 495 (871)
.... ....+.++|.|+|+||.++..++||
T Consensus 662 ~~~r---------------------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF 690 (750)
T COG4251 662 SAER---------------------------------------------------QEDEWTFSVRDNGIGIDPAYFERIF 690 (750)
T ss_pred eeec---------------------------------------------------cCCceEEEecCCCCCcCHHHHHHHH
Confidence 2110 1124689999999999999999999
Q ss_pred ccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCC
Q 002879 496 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 552 (871)
Q Consensus 496 ~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~ 552 (871)
..|.+.. +...+.|||+||+|||+|++.|+|.|+++|.+|.|+||.|++|....+
T Consensus 691 ~iFqRl~--s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 691 VIFQRLH--SRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred HHHHhcC--chhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 9998863 345688999999999999999999999999999999999999987654
No 26
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=9.2e-30 Score=294.74 Aligned_cols=231 Identities=29% Similarity=0.447 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002879 259 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVE 337 (871)
Q Consensus 259 ~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lIndlLd~skie 337 (871)
+.+.++.++++.......+|.+++||||||||+.+.+.++.+.....+ .+..++++.+.....++..++++++++++++
T Consensus 225 ~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 304 (457)
T TIGR01386 225 QSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARAD 304 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555666666667899999999999999999999987654433 3446778888888899999999999999999
Q ss_pred cCCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEE
Q 002879 338 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVY 416 (871)
Q Consensus 338 ~g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~ 416 (871)
.....+...++++.++++++++.+...+.++++.+.+.. . ..+.+|+..|.+++.||++||+||++. |.|.|++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~ 380 (457)
T TIGR01386 305 NGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIE 380 (457)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence 998888889999999999999999988899998876643 2 468899999999999999999999965 57776654
Q ss_pred EeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcc
Q 002879 417 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 496 (871)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~ 496 (871)
.. ...+.|+|+|+|+|||++.++++|+
T Consensus 381 ~~-----------------------------------------------------~~~~~i~v~D~G~g~~~~~~~~~~~ 407 (457)
T TIGR01386 381 RR-----------------------------------------------------SDEVRVSVSNPGPGIPPEHLSRLFD 407 (457)
T ss_pred ec-----------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhcc
Confidence 21 1247899999999999999999999
Q ss_pred cccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 002879 497 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 547 (871)
Q Consensus 497 pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp 547 (871)
|||+.+.++++..+|+||||+||+++++.|||+|.+++ +++||+|++++|
T Consensus 408 ~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 408 RFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred ccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 99999887767778999999999999999999999999 999999999986
No 27
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=2.3e-29 Score=291.97 Aligned_cols=232 Identities=23% Similarity=0.385 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002879 260 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 339 (871)
Q Consensus 260 ~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g 339 (871)
.++.+.+++++....+.+|++++||||||||++|.+.++++.....+. ..+..+....++|..++++++++++.+..
T Consensus 228 ~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~ 304 (461)
T PRK09470 228 SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQK 304 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555666666777788999999999999999999999886543322 24567888899999999999999998765
Q ss_pred CeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEee
Q 002879 340 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 419 (871)
Q Consensus 340 ~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 419 (871)
. .+....+++..++++++..+...+..+++.+.+...+. +..+.+|+..|.+++.||++||+||++ +.|.|+++..+
T Consensus 305 ~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~~ 381 (461)
T PRK09470 305 N-HLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVDK 381 (461)
T ss_pred c-ccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEEC
Confidence 3 56777899999999999998888888999888874333 457889999999999999999999996 56666654321
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccccc
Q 002879 420 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 499 (871)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 499 (871)
..+.|+|+|+|+||+++.++++|+|||
T Consensus 382 -----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~ 408 (461)
T PRK09470 382 -----------------------------------------------------DGLTITVDDDGPGVPEEEREQIFRPFY 408 (461)
T ss_pred -----------------------------------------------------CEEEEEEEECCCCCCHHHHHHhcCCCc
Confidence 246899999999999999999999999
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 500 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 500 q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
+.+...++..+|+||||+||+++++.|||++.+.|.++.||+|++++|+..
T Consensus 409 ~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 409 RVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred cCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 988777777789999999999999999999999999999999999999753
No 28
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=3.8e-30 Score=263.74 Aligned_cols=222 Identities=23% Similarity=0.393 Sum_probs=183.5
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHH
Q 002879 273 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 352 (871)
Q Consensus 273 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ 352 (871)
++-+...++++|||||||.||.|.+++|...-.++..++|.+.|-..+++|.+|++.+.-++- .-..+..++|++.
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 355678999999999999999999999988776777899999999999999999998865543 3344556899999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC---C--CeEEEEEEEeeccccchhh
Q 002879 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---K--GHIFVTVYLVEEVVDSIEV 427 (871)
Q Consensus 353 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~---~--G~I~v~v~~~~~~~~~~~~ 427 (871)
+++.|..+.+..+ ..++.+.-++++.+|. +.+|+.+|.|++.||+.||+..-. . |.|.++-+..-.. .+
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~----~i 279 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL----TI 279 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE----Ec
Confidence 9999999887654 4679999999999996 789999999999999999999864 3 7777764321110 00
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCC
Q 002879 428 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 507 (871)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~ 507 (871)
....+...+.+.|.|+|+|||++.++++|.||...
T Consensus 280 ---------------------------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~------ 314 (363)
T COG3852 280 ---------------------------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG------ 314 (363)
T ss_pred ---------------------------------------cCceeEeeeeeEEecCCCCCChHHhhhcccccccc------
Confidence 01122334678999999999999999999999853
Q ss_pred CCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 508 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 508 ~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
+.+||||||+|+++|+..|||.|.|+|.|| .|+|++.+|..+
T Consensus 315 r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 315 REGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 457999999999999999999999999997 599999999865
No 29
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=5.8e-29 Score=286.79 Aligned_cols=222 Identities=21% Similarity=0.314 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002879 259 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 338 (871)
Q Consensus 259 ~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~ 338 (871)
+.++++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....++|..++++++++.+.+.
T Consensus 213 ~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~ 287 (435)
T PRK09467 213 RAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQ 287 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445566667777888899999999999999999999998877532 233456778889999999999999998765
Q ss_pred CCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEe
Q 002879 339 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 418 (871)
Q Consensus 339 g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 418 (871)
. ....++++.+++++++..+. ..+..+.+.+++. +..+.+|+..|++|+.||++||+||+ .|.|.|++...
T Consensus 288 ~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~ 358 (435)
T PRK09467 288 E---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE 358 (435)
T ss_pred C---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec
Confidence 3 34567899999999987654 3445555555543 34788999999999999999999998 57777765421
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccc
Q 002879 419 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 498 (871)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 498 (871)
...+.|+|+|+|+||+++.++++|+||
T Consensus 359 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f 385 (435)
T PRK09467 359 -----------------------------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPF 385 (435)
T ss_pred -----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCc
Confidence 124789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 499 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 499 ~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
++.+.+ +..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 386 ~~~~~~--~~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 386 TRGDSA--RGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred ccCCCC--CCCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 997754 3347999999999999999999999999999999999999974
No 30
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=7.2e-29 Score=287.27 Aligned_cols=226 Identities=20% Similarity=0.315 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002879 260 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVES 338 (871)
Q Consensus 260 ~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~-~~~~~l~~i~~~~~~L~~lIndlLd~skie~ 338 (871)
.++.+..+.+.......+|++.+|||||||++.+.+.++.+.....++ ...++++.+...++++..++++++.+++++.
T Consensus 222 ~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~ 301 (449)
T PRK10337 222 ALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDS 301 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444555555556678999999999999999999998876544333 3457889999999999999999999999998
Q ss_pred CCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC-eEEEEEEE
Q 002879 339 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 417 (871)
Q Consensus 339 g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~ 417 (871)
+.......++++.+++++++..+...+..+++.+.+.+++. +..+.+|+..+.+++.||++||+||++.| .|.|++..
T Consensus 302 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~ 380 (449)
T PRK10337 302 LDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA 380 (449)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe
Confidence 77666777899999999999999989999999999887653 34568999999999999999999999764 55554321
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccc
Q 002879 418 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 497 (871)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 497 (871)
..++|+|+|+|||++.++++|+|
T Consensus 381 ---------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~~ 403 (449)
T PRK10337 381 ---------------------------------------------------------RNFTVRDNGPGVTPEALARIGER 403 (449)
T ss_pred ---------------------------------------------------------eEEEEEECCCCCCHHHHHHhccc
Confidence 14899999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 002879 498 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 546 (871)
Q Consensus 498 F~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~l 546 (871)
|++.+. +..+|+||||+||++++++|||+|+++|.++.|++|++++
T Consensus 404 f~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 404 FYRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred ccCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 998643 2446999999999999999999999999999999999863
No 31
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=6e-28 Score=268.77 Aligned_cols=211 Identities=22% Similarity=0.405 Sum_probs=182.6
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHH
Q 002879 276 SQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 352 (871)
Q Consensus 276 s~fla~iSHElRTPL~~I~g~~~---lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ 352 (871)
.|+.+.+||||+.||.+|.++++ +|.+....++-.+.++.|..-.++|-.+..+|-.|++--... ..++.+.+
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~~ 460 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLRE 460 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHHH
Confidence 47999999999999999999886 466777777888999999999999999999999999865444 45789999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC---CCeEEEEEEEeeccccchhhhh
Q 002879 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVET 429 (871)
Q Consensus 353 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~~ 429 (871)
.|++++.++....+..+..+....++. |.+|.+|+.||+|||.|||+||+..+. ++.|.|.+..
T Consensus 461 ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------------ 527 (603)
T COG4191 461 AIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------------ 527 (603)
T ss_pred HHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------------
Confidence 999999999999999999998877653 568999999999999999999999974 4566555432
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCC
Q 002879 430 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 509 (871)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 509 (871)
+...+.|+|.|||+||+++.+.++|+||++.+ ...
T Consensus 528 -----------------------------------------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK----~~~ 562 (603)
T COG4191 528 -----------------------------------------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK----PVG 562 (603)
T ss_pred -----------------------------------------cCCeEEEEEccCCCCCCHHHHHhhcCCccccC----ccc
Confidence 12357899999999999999999999999753 235
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 510 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 510 ~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
.|.||||+||+.|++-|||+|.+.+.++.|+.|++.|+.
T Consensus 563 ~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 563 KGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred CCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 799999999999999999999999999999999999873
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.97 E-value=4.4e-29 Score=275.70 Aligned_cols=218 Identities=32% Similarity=0.427 Sum_probs=190.6
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 351 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~ 351 (871)
.+.+|++.++|||||||++|.++++++... ..++...++++.+..++++|..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345799999999999999999999988654 344566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEEeeccccchhhhhh
Q 002879 352 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETE 430 (871)
Q Consensus 352 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~ 430 (871)
+++..++..+......+++.+.+.++. +..+.+|+..|.+|+.||++||+||+.. +.|.|++...
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------ 258 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------ 258 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc------------
Confidence 999999999999999999999888732 3468899999999999999999999864 5565554321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCC
Q 002879 431 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 510 (871)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 510 (871)
...+.|.|.|+|+|||++.++++|+||++.+...+...+
T Consensus 259 -----------------------------------------~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~ 297 (333)
T TIGR02966 259 -----------------------------------------GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTG 297 (333)
T ss_pred -----------------------------------------CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCC
Confidence 113679999999999999999999999987766566678
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 002879 511 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 546 (871)
Q Consensus 511 GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~l 546 (871)
|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 298 g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 298 GTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred CCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 999999999999999999999999999999999974
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=1.1e-27 Score=278.58 Aligned_cols=218 Identities=25% Similarity=0.391 Sum_probs=191.4
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 353 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~l 353 (871)
...+|++.++||+|||++.+.+.++++......+...++++.+...++++..++++++.+++++.+.......++++.++
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 34578999999999999999999999887555566788999999999999999999999999998887777889999999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC-CCeEEEEEEEeeccccchhhhhhhc
Q 002879 354 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 432 (871)
Q Consensus 354 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~~ 432 (871)
+++++..+...+..+++.+.+.++ +..+.+|...|.+++.||+.||+||+. .|.|.|++...
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~-------------- 397 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD-------------- 397 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--------------
Confidence 999999999999999999988765 446889999999999999999999985 46777776421
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002879 433 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 512 (871)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 512 (871)
...+.|+|+|+|+|||++.++++|++|++.+.. ....+|+
T Consensus 398 ---------------------------------------~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~ 437 (475)
T PRK11100 398 ---------------------------------------GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKST 437 (475)
T ss_pred ---------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCc
Confidence 124789999999999999999999999976432 2345799
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 513 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 513 GLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
||||+||+.++++|||+|.++|.++.||+|.+++|.
T Consensus 438 GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~ 473 (475)
T PRK11100 438 GLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473 (475)
T ss_pred chhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeC
Confidence 999999999999999999999999999999999986
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=4.7e-28 Score=270.82 Aligned_cols=217 Identities=24% Similarity=0.434 Sum_probs=174.0
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 353 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~l 353 (871)
+..+|++.+||||||||++|.|+++++.+...++..+++++.+..++++|..++++++++.+... ...+++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 45689999999999999999999999887666667789999999999999999999998765432 245799999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccC--CCCeEEEEEEEeeccccchhhhhhh
Q 002879 354 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT--EKGHIFVTVYLVEEVVDSIEVETEL 431 (871)
Q Consensus 354 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT--~~G~I~v~v~~~~~~~~~~~~~~~~ 431 (871)
++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.|.|.|.+.......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888777554 467888887766655 478999999999999999999997 3456655542110000
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCc
Q 002879 432 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 511 (871)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G 511 (871)
.........+.|+|.|+|+|||++.++++|+||++. +.+|
T Consensus 272 ----------------------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g 311 (348)
T PRK11073 272 ----------------------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGG 311 (348)
T ss_pred ----------------------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCC
Confidence 000011124679999999999999999999999863 2469
Q ss_pred ccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 512 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 512 tGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
+||||+|||++++.|||+|+++|.+|+ |+|++++|+
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 999999999999999999999999885 999999986
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=2.9e-26 Score=251.13 Aligned_cols=217 Identities=39% Similarity=0.666 Sum_probs=184.5
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-eeeEeEeecHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK-LELEAVSFNLRA 352 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~-~~l~~~~~~l~~ 352 (871)
.+..|++.++||+|||++.+.+.++++.....+ .+.+++..+...++++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478999999999999999999999866544222 267888888899999999999999999998873 344466778999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhc
Q 002879 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 432 (871)
Q Consensus 353 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 432 (871)
++++++..+...+..+++.+....+ .+..+.+|+.++.||+.||++||+||++.|.|.|.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999999988888888886554 2346889999999999999999999998777777764211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002879 433 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 512 (871)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 512 (871)
..+.++|.|+|+||+++.++++|+||++.+...+ |+
T Consensus 258 ----------------------------------------~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~ 293 (336)
T COG0642 258 ----------------------------------------EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GT 293 (336)
T ss_pred ----------------------------------------CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CC
Confidence 1578999999999999999999999998765322 99
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 513 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 513 GLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
||||+|||++++.|||+|.++|.++.||+|++++|...
T Consensus 294 GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 294 GLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999999999999999754
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=3.4e-26 Score=273.51 Aligned_cols=214 Identities=26% Similarity=0.487 Sum_probs=185.3
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 353 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~l 353 (871)
+..+|++.++|||||||+.|.|+++++.....+....++++.+....++|..++++++++++.+... ..++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHH
Confidence 4568999999999999999999999987765566778999999999999999999999999876443 457899999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC-CCeEEEEEEEeeccccchhhhhhhc
Q 002879 354 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 432 (871)
Q Consensus 354 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~~ 432 (871)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+. .|.|.|++...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~------------- 530 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS------------- 530 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC-------------
Confidence 9999999998878899999988876665 4778999999999999999999975 467766654211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002879 433 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 512 (871)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 512 (871)
...+.|+|+|+|+|||++.++++|+||++.+ .+|+
T Consensus 531 ---------------------------------------~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~ 565 (607)
T PRK11360 531 ---------------------------------------DGQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGT 565 (607)
T ss_pred ---------------------------------------CCEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCC
Confidence 0127899999999999999999999999643 3589
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 513 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 513 GLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
||||++||.++++|||+|+++|.+|+||+|+|++|+..
T Consensus 566 glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 566 GLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred chhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999854
No 37
>PRK13560 hypothetical protein; Provisional
Probab=99.94 E-value=9.6e-26 Score=279.83 Aligned_cols=213 Identities=17% Similarity=0.171 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002879 259 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 338 (871)
Q Consensus 259 ~~~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~ 338 (871)
.+..++.++++++.++|++|+++|||||||||++|.|+++++.+...++....++..+......|..+++.++..
T Consensus 589 TerK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----- 663 (807)
T PRK13560 589 SERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS----- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 344455566777788899999999999999999999999998877667777777766666655555555544322
Q ss_pred CCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC----CeEEEE
Q 002879 339 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK----GHIFVT 414 (871)
Q Consensus 339 g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~----G~I~v~ 414 (871)
....++++.++++++...+......+...+.+.++...+.....+...+.|||.||++||+||+.. |.|.|+
T Consensus 664 ----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~ 739 (807)
T PRK13560 664 ----EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVE 739 (807)
T ss_pred ----ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEE
Confidence 133568999999999998887777666666666655444344456778999999999999999743 456655
Q ss_pred EEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhh
Q 002879 415 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 494 (871)
Q Consensus 415 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~i 494 (871)
+... +...+.|+|+|||+|||++..
T Consensus 740 ~~~~----------------------------------------------------~~~~v~i~V~D~G~GI~~~~~--- 764 (807)
T PRK13560 740 IREQ----------------------------------------------------GDGMVNLCVADDGIGLPAGFD--- 764 (807)
T ss_pred EEEc----------------------------------------------------CCCEEEEEEEeCCCcCCcccc---
Confidence 4321 012578999999999998731
Q ss_pred cccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 495 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 495 F~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
...|+||||+|||+||++|||+|+++|. +||+|+|+||+..
T Consensus 765 -------------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 765 -------------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred -------------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 1247889999999999999999999994 7999999999753
No 38
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.94 E-value=7.3e-25 Score=266.25 Aligned_cols=203 Identities=21% Similarity=0.314 Sum_probs=163.3
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 352 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ 352 (871)
+..++.+.++||||||++.+.++++.+.+...+ +.+.++++.+..+.++|..+++++.+. ....+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~------~~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK------GLEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccCCccccHHH
Confidence 346788999999999999999888876654433 345678888999999999888776433 2245567799999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC-CCeEEEEEEEeeccccchhhhhhh
Q 002879 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 431 (871)
Q Consensus 353 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~ 431 (871)
+++++.+.+... ...+++ .++++ ..+.+|+.++.||+.||++||+||++ +|.|.|++...+
T Consensus 548 ll~~~~~~~~~~--~~~~~l--~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~------------ 609 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEV--SIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVEREC------------ 609 (679)
T ss_pred HHHHHHHHhhhh--cCCceE--EeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcC------------
Confidence 999998876542 233444 34443 46889999999999999999999995 467777764211
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhh-HhhhcccccccCCCCCCCCC
Q 002879 432 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA-QSRIFTPFMQVGPSISRTHG 510 (871)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-~~~iF~pF~q~~~s~~~~~~ 510 (871)
..+.|+|+|+|+|||++. ++++|+||++.+ .+
T Consensus 610 -----------------------------------------~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~ 642 (679)
T TIGR02916 610 -----------------------------------------GAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GA 642 (679)
T ss_pred -----------------------------------------CEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CC
Confidence 247899999999999999 999999998643 27
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 002879 511 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 547 (871)
Q Consensus 511 GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp 547 (871)
|+||||+|||++++.|||+|+++|.+|+||+|++++|
T Consensus 643 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 643 GMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9999999999999999999999999999999999986
No 39
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.91 E-value=1.6e-24 Score=221.85 Aligned_cols=179 Identities=31% Similarity=0.460 Sum_probs=134.6
Q ss_pred hHHHHHHh--hhhhccCccceeeecccCcchHHHHHHHhCceeeeecccccCCCCCCCCCCCCCceeeeEee--cCCCce
Q 002879 2 TFTRYTER--TAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFA--QDTVSH 77 (871)
Q Consensus 2 ~f~~~~~~--~~~~~p~~~~~~~~~~v~~~~r~~fe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~pv~~~--~~~~~~ 77 (871)
-|..|++. .+..+|++.+++|+++|.+++|++||+++........ ...|.+.+++|+||.|. ...+..
T Consensus 9 eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~~~~~~~f--------~i~~~~~~~~~~pv~yi~P~~~n~~ 80 (193)
T PF03924_consen 9 EFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLRAEGFPDF--------RIRPDGPRDEYFPVTYIEPLEGNEA 80 (193)
T ss_dssp HHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT------S----------BTTS--SEE-BEEEE-GGG--GG
T ss_pred HHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHhhhcccce--------EeeeCCCCCCceEEEEeecchhHHh
Confidence 49999999 9999999999999999999999999998744422211 11135589999999774 556788
Q ss_pred EEeeccCCChhchHHHHHHHhcCCceeeccccccccC--CceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecchHHH
Q 002879 78 VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN--RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESL 155 (871)
Q Consensus 78 ~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~--~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l 155 (871)
++|+|++|+|.||++|.+|++||+.++|+|++|++.+ +.|++++.|||..+.+...++++|...++||+.++|++++|
T Consensus 81 ~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~v~~~~~l 160 (193)
T PF03924_consen 81 ALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSAVFRVDDL 160 (193)
T ss_dssp GBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEEEEEHHHH
T ss_pred ccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEEEEEHHHH
Confidence 9999999999999999999999999999999999765 69999999999766666778999999999999999999999
Q ss_pred HHHHHHHhhccCcEEEEEeecCCCCCceecccC
Q 002879 156 VEKLLHQLASKQTIFVNVYDITNLSHPISMYGS 188 (871)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~y~~ 188 (871)
++.++........+.+.+||.+....+..+|++
T Consensus 161 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 161 FESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp HHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred HHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 999987765346899999998777777777753
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.91 E-value=3.1e-23 Score=245.80 Aligned_cols=195 Identities=22% Similarity=0.319 Sum_probs=138.0
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHH
Q 002879 275 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 354 (871)
Q Consensus 275 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll 354 (871)
..++++.+|||+||||++|.|++++... .+..+|+..+ +......++++++..+ . .++
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~--~-------------~~~ 396 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK--S-------------PVI 396 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc--C-------------HHH
Confidence 3457788999999999999999987432 2223343322 1222222333332111 0 112
Q ss_pred HHHHHHHHHHHhhcCCEEEEEeCCCCCceE-EecHHHHHHHHHHHHHHhhccCC---CCeEEEEEEEeeccccchhhhhh
Q 002879 355 DDVLSLFSGKSQDKGVELAVYISDRVPETL-IGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVETE 430 (871)
Q Consensus 355 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v-~~D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~~~ 430 (871)
...+......+..+++.+.+..++.+|... ..+...|.||+.||++||+||+. .|.|.|++...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------ 464 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------ 464 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc------------
Confidence 222222334567889998887766555322 22446899999999999999963 45666655321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCC
Q 002879 431 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 510 (871)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 510 (871)
...+.|+|+|+|+|||++.++++|+||++. +.+
T Consensus 465 -----------------------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~ 497 (542)
T PRK11086 465 -----------------------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGS 497 (542)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCC
Confidence 124789999999999999999999999853 246
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 511 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 511 GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
|+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 498 g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 498 NRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred CCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999854
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.91 E-value=3.9e-22 Score=232.67 Aligned_cols=195 Identities=11% Similarity=0.187 Sum_probs=152.7
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecH
Q 002879 272 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 350 (871)
Q Consensus 272 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l 350 (871)
++.+.++.+.++||+||||++|.+.++++.+...+ ++.++..+.+...+.++.+.++++++..+-. ...++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~------~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPR------QLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCc------ccccCCH
Confidence 44567888999999999999999999988664433 3455778889999999999999998655421 2346799
Q ss_pred HHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhh
Q 002879 351 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 430 (871)
Q Consensus 351 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 430 (871)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.|++...
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 9999999988875554444444433322 22445678889999999999999999988877766421
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCC
Q 002879 431 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 510 (871)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 510 (871)
...+.++|+|+|+|||++. .
T Consensus 439 -----------------------------------------~~~i~l~V~DnG~Gi~~~~-------------------~ 458 (495)
T PRK11644 439 -----------------------------------------DERLMLVIEDDGSGLPPGS-------------------G 458 (495)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCcCC-------------------C
Confidence 1247899999999998641 3
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 511 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 511 GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
|+|+||+|||++++.|||+|+++| ++||+|++++|.
T Consensus 459 ~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 459 QQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 679999999999999999999999 889999999984
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.90 E-value=4e-22 Score=236.79 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=145.1
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHH
Q 002879 277 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 356 (871)
Q Consensus 277 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~ 356 (871)
+.+..++||+++||++|.|++++-. ..+.++.+...+..+..+++++...-+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~-------~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE-------YDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 4566799999999999999887521 234566777777778888877766422 1122222
Q ss_pred HHHHHHHHHhhcCCEEEEEeCCCCC-ceEEecHHHHHHHHHHHHHHhhccC---CCCeEEEEEEEeeccccchhhhhhhc
Q 002879 357 VLSLFSGKSQDKGVELAVYISDRVP-ETLIGDPGRFRQIITNLMGNSIKFT---EKGHIFVTVYLVEEVVDSIEVETELS 432 (871)
Q Consensus 357 v~~~~~~~a~~k~i~l~~~~~~~~p-~~v~~D~~rl~qIl~NLl~NAiKfT---~~G~I~v~v~~~~~~~~~~~~~~~~~ 432 (871)
+.. ....+.++++.+.+..+..+. .....|+..|.||+.||++||+||. +.|...|.+....
T Consensus 399 l~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------- 464 (545)
T PRK15053 399 LFG-KVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------- 464 (545)
T ss_pred HHH-HHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE-------------
Confidence 222 234567788888775443321 1235699999999999999999994 3343333333211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002879 433 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 512 (871)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 512 (871)
+...+.|+|+|+|+|||++.+++||+|||+.+ ++..+|+
T Consensus 465 --------------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~ 503 (545)
T PRK15053 465 --------------------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEH 503 (545)
T ss_pred --------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCc
Confidence 11247899999999999999999999999743 3345789
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 513 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 513 GLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 504 GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 504 GIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred eeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 99999999999999999999999999999999999743
No 43
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-22 Score=223.82 Aligned_cols=211 Identities=23% Similarity=0.338 Sum_probs=167.8
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEe
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDV---TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 347 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~---~l~~---~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~ 347 (871)
|..+-..-++|||||||+-|...++-|... ..++ .-.++.++|.+....+.+||++.-.|+|+-.-+ .++
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p~----~e~ 560 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAPK----LEK 560 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CCc
Confidence 444555569999999999999999987542 2332 235788999999999999999999999976544 356
Q ss_pred ecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC-----e-EEEEEEEeecc
Q 002879 348 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-----H-IFVTVYLVEEV 421 (871)
Q Consensus 348 ~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-----~-I~v~v~~~~~~ 421 (871)
.||++++.+++.+++. ....+.+..++... |....+|+..|.|++.||+.||..+-+.- . -.++++..
T Consensus 561 ~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~--- 634 (712)
T COG5000 561 SDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLD--- 634 (712)
T ss_pred chHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEe---
Confidence 8999999999988764 34577888887766 77788899999999999999999985321 0 01122111
Q ss_pred ccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccccccc
Q 002879 422 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 501 (871)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~ 501 (871)
.....+++.|.|||.|.|.|.+.++||||++.
T Consensus 635 ------------------------------------------------~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTt 666 (712)
T COG5000 635 ------------------------------------------------DADGRIVVDVIDNGKGFPRENRHRALEPYVTT 666 (712)
T ss_pred ------------------------------------------------cCCCeEEEEEecCCCCCChHHhhhhccCceec
Confidence 11235889999999999999999999999964
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeC-CCeEEEEEEEEe
Q 002879 502 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP-NIGSTFTFTAVF 548 (871)
Q Consensus 502 ~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~-g~Gs~F~~~lp~ 548 (871)
+..||||||+|||+|+|-|||.|.+...| -.|....+.+|.
T Consensus 667 ------r~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 667 ------REKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ------ccccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 34699999999999999999999999885 359999998886
No 44
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.87 E-value=2.9e-20 Score=198.90 Aligned_cols=209 Identities=21% Similarity=0.340 Sum_probs=172.7
Q ss_pred HHHHHhHhhhhhHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHH
Q 002879 277 QFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 353 (871)
Q Consensus 277 ~fla~iSHElRTPL~~I~g~~~---lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~l 353 (871)
+-+.++||||..|||++..|+= +..+...+.....++..|..-.+++-.+|+.+-.|+|-.+++-.+ .|++|+++
T Consensus 453 qTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~~ 530 (673)
T COG4192 453 QTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNSV 530 (673)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHHH
Confidence 5678999999999999988763 333444556668999999999999999999999999988887655 46899999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC--eEEEEEEEeeccccchhhhhhh
Q 002879 354 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETEL 431 (871)
Q Consensus 354 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G--~I~v~v~~~~~~~~~~~~~~~~ 431 (871)
++.+.+++..+.+.+.+.+..-. +. .+|.||..+++||+.||+-||+.++..- .|.+.+.
T Consensus 531 v~~AweLl~~khk~rQ~~Li~pt--D~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~--------------- 592 (673)
T COG4192 531 VEQAWELLQTKHKRRQIKLINPT--DD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL--------------- 592 (673)
T ss_pred HHHHHHHHHhhhhhccccccCCc--cc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee---------------
Confidence 99999999999998888886543 22 3799999999999999999999987432 3333321
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCc
Q 002879 432 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 511 (871)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G 511 (871)
..+...+++.|.|+|.|-|-+..+++|.||.. .+.-|
T Consensus 593 -------------------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFtt------sK~vg 629 (673)
T COG4192 593 -------------------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTT------SKEVG 629 (673)
T ss_pred -------------------------------------cCcccceEEEEecCCCCCchhHHHHhcCCccc------ccccc
Confidence 11223478999999999999999999999964 24469
Q ss_pred ccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 512 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 512 tGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
.|||||||..|++.|.|++.+.|...+|.++.+.+..
T Consensus 630 LGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 630 LGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred cccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 9999999999999999999999999999988776643
No 45
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.85 E-value=1.8e-20 Score=195.55 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=109.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++.....+...|.+.||.|.++.+|.+|++.+. .. ||+|++|++||+|||+++|++||+.
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~-~dlviLD~~lP~~dG~~~~~~iR~~----------- 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-EQ-PDLVLLDLMLPDLDGLELCRRLRAK----------- 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cC-CCEEEEECCCCCCCHHHHHHHHHhh-----------
Confidence 7999999999999999999999999999999999999985 45 9999999999999999999999963
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
....+|||++||..+.+++..++++|||||++|||++++|..+|+..+...
T Consensus 69 ----------~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 69 ----------KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred ----------cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 134689999999999999999999999999999999999999999887653
No 46
>PRK13559 hypothetical protein; Provisional
Probab=99.84 E-value=1.3e-19 Score=203.82 Aligned_cols=187 Identities=13% Similarity=0.157 Sum_probs=142.5
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHH
Q 002879 273 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 352 (871)
Q Consensus 273 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ 352 (871)
+++.+|++.++||+||||+.|.|+++++... ....++++.+...+.+|..+++++|+.++ ..++++.+
T Consensus 168 ~~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~ 235 (361)
T PRK13559 168 AHERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEE 235 (361)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHH
Confidence 3456799999999999999999999988622 23456788889999999999999987643 35689999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHhhcc---C-CCCeEEEEEEEeeccccchhh
Q 002879 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKF---T-EKGHIFVTVYLVEEVVDSIEV 427 (871)
Q Consensus 353 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D-~~rl~qIl~NLl~NAiKf---T-~~G~I~v~v~~~~~~~~~~~~ 427 (871)
++++++..+... +..+.+..+ .+ .+..+ ...|.|||.||++||+|| + +.|.|.|.+....
T Consensus 236 ~~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~-------- 300 (361)
T PRK13559 236 LIRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSP-------- 300 (361)
T ss_pred HHHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecC--------
Confidence 999998877533 444544422 11 22222 356999999999999999 4 3577777652110
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCC
Q 002879 428 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 507 (871)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~ 507 (871)
+...+.+.|.|+|.|++++
T Consensus 301 -------------------------------------------~~~~~~i~v~d~G~~~~~~------------------ 319 (361)
T PRK13559 301 -------------------------------------------EGAGFRIDWQEQGGPTPPK------------------ 319 (361)
T ss_pred -------------------------------------------CCCeEEEEEECCCCCCCCC------------------
Confidence 1124789999999997653
Q ss_pred CCCcccccHHHHHHHHHH-cCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 508 THGGTGIGLSISKYLVGR-MKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 508 ~~~GtGLGLsI~k~lv~~-~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
..|+|+||.||+++++. |||+|++++. +.||+|+|++|..
T Consensus 320 -~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 -LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred -CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 24789999999999987 9999999998 5799999999963
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.83 E-value=4.1e-20 Score=171.49 Aligned_cols=109 Identities=36% Similarity=0.595 Sum_probs=97.7
Q ss_pred ecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002879 386 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 464 (871)
Q Consensus 386 ~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (871)
||+.+|++|+.||+.||+||++. |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999966 88888875422
Q ss_pred CCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEE
Q 002879 465 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 544 (871)
Q Consensus 465 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~ 544 (871)
..+.|+|.|+|.|||++.++++|+||++.+. .....+|+||||++|+.++++|+|++++.|.++.||+|+|
T Consensus 36 --------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~ 106 (111)
T PF02518_consen 36 --------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTF 106 (111)
T ss_dssp --------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEE
T ss_pred --------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEE
Confidence 2578999999999999999999999999876 3345578999999999999999999999999999999999
Q ss_pred EEEe
Q 002879 545 TAVF 548 (871)
Q Consensus 545 ~lp~ 548 (871)
++|+
T Consensus 107 ~~p~ 110 (111)
T PF02518_consen 107 TLPL 110 (111)
T ss_dssp EEEG
T ss_pred EEEC
Confidence 9996
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.79 E-value=1.2e-17 Score=199.18 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=141.6
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHH----HhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecH
Q 002879 277 QFLATVSHEIRTPMNGVLGMLDM----LMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 350 (871)
Q Consensus 277 ~fla~iSHElRTPL~~I~g~~~l----L~~~--~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l 350 (871)
+..+.++||+++|++.++.++.+ +... ...+...+.+..+.....++...+.+++...+ +...++++
T Consensus 362 ~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l 434 (565)
T PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANL 434 (565)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence 34566999999999988777653 3221 12234456677777777777777888776443 23456899
Q ss_pred HHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhh
Q 002879 351 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 430 (871)
Q Consensus 351 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 430 (871)
.+.+.+++..+... .++.+.+......+....+++.++.|++.||+.||+||++.|.|.+.+....
T Consensus 435 ~~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~----------- 500 (565)
T PRK10935 435 GSALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNP----------- 500 (565)
T ss_pred HHHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-----------
Confidence 99999999988754 3344444332111112234556799999999999999999888877764310
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCC
Q 002879 431 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 510 (871)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 510 (871)
...+.|+|.|+|+|||++. ..
T Consensus 501 -----------------------------------------~~~~~i~V~D~G~Gi~~~~------------------~~ 521 (565)
T PRK10935 501 -----------------------------------------DGEHTVSIRDDGIGIGELK------------------EP 521 (565)
T ss_pred -----------------------------------------CCEEEEEEEECCcCcCCCC------------------CC
Confidence 1247899999999999631 24
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 511 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 511 GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
|+||||+||+++++.|||+|+++|.+|+||+|+|++|...
T Consensus 522 ~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 522 EGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred CCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCCC
Confidence 7899999999999999999999999999999999999753
No 49
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.76 E-value=5.6e-17 Score=180.80 Aligned_cols=194 Identities=26% Similarity=0.383 Sum_probs=140.3
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHH
Q 002879 277 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 356 (871)
Q Consensus 277 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~ 356 (871)
+-|...+||..|=|+.|.|++++=.- ++..+|+..+...- ...++.+.. ++. ...+.-
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~y----d~a~~~I~~~~~~q---q~~~~~l~~--~i~-------------~~~lAg 392 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGEY----DDALDYIQQESEEQ---QELIDSLSE--KIK-------------DPVLAG 392 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHhhh---hhhHHHHHH--hcc-------------cHHHHH
Confidence 34667899999999999999986321 23345554444332 222222211 111 123334
Q ss_pred HHHHHHHHHhhcCCEEEEEeCCCCCce-EEecHHHHHHHHHHHHHHhhccCC--C--CeEEEEEEEeeccccchhhhhhh
Q 002879 357 VLSLFSGKSQDKGVELAVYISDRVPET-LIGDPGRFRQIITNLMGNSIKFTE--K--GHIFVTVYLVEEVVDSIEVETEL 431 (871)
Q Consensus 357 v~~~~~~~a~~k~i~l~~~~~~~~p~~-v~~D~~rl~qIl~NLl~NAiKfT~--~--G~I~v~v~~~~~~~~~~~~~~~~ 431 (871)
.+---..+|+++|+.+.++.+..+|.. -.-++.-+--|+-||++||+..+. . ..|.+.+..
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~-------------- 458 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSD-------------- 458 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe--------------
Confidence 444445678999999999877666542 234889999999999999999874 2 344444421
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCc
Q 002879 432 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 511 (871)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G 511 (871)
+...+.|+|.|||+|||++.++++|+.=+.. +..+|
T Consensus 459 ---------------------------------------~~~~lvieV~D~G~GI~~~~~~~iFe~G~St-----k~~~~ 494 (537)
T COG3290 459 ---------------------------------------RGDELVIEVADTGPGIPPEVRDKIFEKGVST-----KNTGG 494 (537)
T ss_pred ---------------------------------------cCCEEEEEEeCCCCCCChHHHHHHHhcCccc-----cCCCC
Confidence 2346899999999999999999999986642 22478
Q ss_pred ccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 512 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 512 tGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
.|.||++||++|+.+||.|+++|+.+.||+|++.+|...
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999999999999999999999854
No 50
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.74 E-value=5.8e-16 Score=184.94 Aligned_cols=182 Identities=18% Similarity=0.194 Sum_probs=135.0
Q ss_pred hhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHHHHHHHHH
Q 002879 286 IRTPMNGVLGMLDMLMD--TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 363 (871)
Q Consensus 286 lRTPL~~I~g~~~lL~~--~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~v~~~~~~ 363 (871)
|..+|+.+...+..+.. ...++..++.+..+....+.+...+.+++...+.. ..+.++.+.+++++..+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 33345555554444432 23456678889999999999999999999876642 3457889999999888875
Q ss_pred HHhhcCCEEEEEeCCCCCceEE-ecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCC
Q 002879 364 KSQDKGVELAVYISDRVPETLI-GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 442 (871)
Q Consensus 364 ~a~~k~i~l~~~~~~~~p~~v~-~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (871)
.. ++.+.+.++...+ .+. .++..+.||+.|+++||+||++.+.|.|++...
T Consensus 446 ~~---~~~i~~~~~~~~~-~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~------------------------ 497 (569)
T PRK10600 446 RF---GFPVKLDYQLPPR-LVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN------------------------ 497 (569)
T ss_pred Hh---CCeEEEEecCCcc-cCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc------------------------
Confidence 53 4444444432111 122 244569999999999999999888877766321
Q ss_pred ccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHH
Q 002879 443 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 522 (871)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~l 522 (871)
...+.|+|.|+|+|||++. ..|+|+||+||+++
T Consensus 498 -----------------------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~ 530 (569)
T PRK10600 498 -----------------------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDR 530 (569)
T ss_pred -----------------------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHH
Confidence 1247899999999999752 13689999999999
Q ss_pred HHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 523 VGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 523 v~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
++.|||+|.+.|.+|+||+|++++|..
T Consensus 531 ~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 531 AQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 999999999999999999999999874
No 51
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.74 E-value=1.8e-16 Score=183.63 Aligned_cols=256 Identities=18% Similarity=0.182 Sum_probs=183.2
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
+++++++++.........+...|..+..+.+..+++..+.. ..++.+++|......+ ....+..++.........
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMD---GFEVCRRLKSDPATTHIP 78 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCCC
Confidence 68999999999988888899999999999999999887754 3467888876543322 233445554432222233
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCC-------CC----CCCCCCCcchhhhcCCCCe
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK-------GN----IRNWELPSMSLRHLLLGRK 726 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~ 726 (871)
++++............. ..+...++.||+....+...+......... .. ..-...+...........+
T Consensus 79 ii~~s~~~~~~~~~~~~-~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T PRK09581 79 VVMVTALDDPEDRVRGL-EAGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAYANKDEDGR 157 (457)
T ss_pred EEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccccccccCce
Confidence 44443332221111111 225667999999998888777655421100 00 0000000001111234578
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccc
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 806 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 806 (871)
||||||++..+..+..+|.. ++.+..+.++.+|+..+. .+.||+|++|+.||.|||++++++||+..
T Consensus 158 vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i~~~~----------- 224 (457)
T PRK09581 158 ILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQLRSKE----------- 224 (457)
T ss_pred EEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHHHhcc-----------
Confidence 99999999999999999965 577788999999999874 57899999999999999999999999742
Q ss_pred cchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh
Q 002879 807 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 861 (871)
Q Consensus 807 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~ 861 (871)
..+++|||++|++.+.+...+|+++|++||+.||++.++|...+..
T Consensus 225 ---------~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~ 270 (457)
T PRK09581 225 ---------RTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRT 270 (457)
T ss_pred ---------ccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHH
Confidence 1357999999999999999999999999999999999999988865
No 52
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-17 Score=184.97 Aligned_cols=117 Identities=33% Similarity=0.480 Sum_probs=110.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..|..+..+|...||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~---------- 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR---------- 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 4799999999999999999999999999999999999999654 79999999999999999999999984
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||+||++.+.++..+|++.||.|||.|||+.++|...|.+.+.
T Consensus 74 ------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~ 121 (464)
T COG2204 74 ------------DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121 (464)
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999998765
No 53
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=1.4e-17 Score=176.77 Aligned_cols=118 Identities=32% Similarity=0.497 Sum_probs=109.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||+|||.+.|+..++..|+..||.|..++||++|+++.. .+.+|+||+|++||+|||+|++++|+.+.+
T Consensus 15 ~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-~~~~dlvllD~~mp~mdg~ev~~~lk~~~p-------- 85 (360)
T COG3437 15 LTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGAEVLNKLKAMSP-------- 85 (360)
T ss_pred ceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-ccCCceEEeeccCCCccHHHHHHHHHhcCC--------
Confidence 58999999999999999999999999999999999999885 466999999999999999999999998533
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
.+.++|||.+||.++.++..+|+.+|+++||.||+++.+|...++..
T Consensus 86 -----------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~ 132 (360)
T COG3437 86 -----------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSH 132 (360)
T ss_pred -----------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999888643
No 54
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.73 E-value=4.8e-17 Score=150.45 Aligned_cols=111 Identities=36% Similarity=0.564 Sum_probs=104.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
||||||++..+..+...|+..|+ .|..+.++.+|++.+. .+.||+||+|+.||+++|.++++.||+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~iiid~~~~~~~~~~~~~~i~~~----------- 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-KHPPDLIIIDLELPDGDGLELLEQIRQI----------- 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-HSTESEEEEESSSSSSBHHHHHHHHHHH-----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-ccCceEEEEEeeeccccccccccccccc-----------
Confidence 79999999999999999999999 9999999999999995 5779999999999999999999999974
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 860 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~ 860 (871)
.+.+|||++|++.+.....+++++|+++||.||++.++|.++|+
T Consensus 69 -----------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 69 -----------NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp -----------TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred -----------cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 24789999999999999999999999999999999999999874
No 55
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.72 E-value=1.4e-16 Score=151.33 Aligned_cols=119 Identities=34% Similarity=0.523 Sum_probs=105.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHH-HHHHHhCCCC-CccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPH-QFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~-eAl~~l~~~~-~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
+.+||+|||++.++..++.+|...|+.+.++.+|. +|++.+. .+ .||+|++|++||+|||+++++++|+.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~-~~~~~dlii~D~~mp~~~G~~~~~~l~~~------- 76 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR-ELPQPDLILLDINMPGMDGIELLRRLRAR------- 76 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhC-------
Confidence 46899999999999999999999999999999996 9999995 45 59999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHhhhCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ-LYREVSRFFPP 865 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~-L~~~l~~~~~~ 865 (871)
...+|||++|++........++++|+++|+.||+...+ |..++.+++..
T Consensus 77 ---------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 77 ---------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred ---------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 23678999999999988888999999999999977666 78888876543
No 56
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.71 E-value=3.7e-17 Score=182.42 Aligned_cols=116 Identities=27% Similarity=0.405 Sum_probs=106.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHH--HcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~--~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
.+||||||.+..|+.++.++. .+|+.|+ +|.||++|+++++ ..+||+|++||.||+|||+++++.||+.
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~-e~~pDiviTDI~MP~mdGLdLI~~ike~------- 73 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ-ETQPDIVITDINMPGMDGLDLIKAIKEQ------- 73 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh-------
Confidence 379999999999999999995 5788755 7999999999995 5789999999999999999999999984
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+-+|++|+..+=+...+|+++|+.|||.||++.++|..++.++.
T Consensus 74 ---------------~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~ 120 (475)
T COG4753 74 ---------------SPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKII 120 (475)
T ss_pred ---------------CCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999998764
No 57
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.67 E-value=1.8e-15 Score=168.32 Aligned_cols=123 Identities=26% Similarity=0.395 Sum_probs=113.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
..++||||||+..+++.++.+|...|+.|..+.+|++|+..+.+ .+||+||.|+.||+||||++|+++|+.+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~------ 203 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLER------ 203 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccc------
Confidence 45799999999999999999999999999999999999999964 58999999999999999999999998642
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
...+|||++|...+.....++++.|++|||+||++..+|...+.+.++..
T Consensus 204 --------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~ 253 (435)
T COG3706 204 --------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRK 253 (435)
T ss_pred --------------cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999999988766543
No 58
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.66 E-value=8.3e-16 Score=148.96 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=108.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.-|-||||+...|+.+..+|...||+|.+..++.+-+... ....+-++++|+.||+|+|.|+-+++++.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-~~~~pGclllDvrMPg~sGlelq~~L~~~---------- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-PLDRPGCLLLDVRMPGMSGLELQDRLAER---------- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-cCCCCCeEEEecCCCCCchHHHHHHHHhc----------
Confidence 4699999999999999999999999999999999999985 46779999999999999999999999873
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
...+|||++|++.+.....+++++||-|||.|||+.+.|+++|.+-+.
T Consensus 74 ------------~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 74 ------------GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred ------------CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999987654
No 59
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.66 E-value=7.4e-16 Score=152.30 Aligned_cols=116 Identities=27% Similarity=0.438 Sum_probs=105.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+||||||++....+-+.++++. ||.++ .|.++++|..++. ...+||||+|+-||+.+|++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~-~~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH-hhCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999985 77655 7899999999985 5678999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
+.++-||++||..+.++..+++.+|+-|||.|||..+.|.+++.+|..
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999999998853
No 60
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.66 E-value=9.6e-15 Score=172.85 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=111.6
Q ss_pred ecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHH---HHHHHHHhhccC-------------CCCeE
Q 002879 348 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHI 411 (871)
Q Consensus 348 ~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qI---l~NLl~NAiKfT-------------~~G~I 411 (871)
+.+..+++..-.+++..+...+.++.+.+... .+..|+..+.++ |.||+.||++|+ +.|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34667777777777777766665666555443 256799999999 679999999996 23566
Q ss_pred EEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhH
Q 002879 412 FVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 491 (871)
Q Consensus 412 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~ 491 (871)
.+++... ...+.|+|+|+|.||+++.+
T Consensus 420 ~l~a~~~-----------------------------------------------------~~~v~I~V~DdG~GId~e~i 446 (670)
T PRK10547 420 ILSAEHQ-----------------------------------------------------GGNICIEVTDDGAGLNRERI 446 (670)
T ss_pred EEEEEEc-----------------------------------------------------CCEEEEEEEeCCCCCCHHHH
Confidence 6655321 12578999999999998654
Q ss_pred ---------------------hhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 492 ---------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 492 ---------------------~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
..||+|||..... .+..+|+|+||+|||++++.|||+|+++|.+|+||+|++++|+..
T Consensus 447 ~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 447 LAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred HHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 4699997754332 234579999999999999999999999999999999999999864
No 61
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.66 E-value=1.4e-15 Score=157.40 Aligned_cols=117 Identities=30% Similarity=0.377 Sum_probs=106.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcC-CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYG-AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g-~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+||||||++..|..++.+|...+ ++|+ .+.||.++++.+ ....||+|+||+.||+|||+++++.||+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~-~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~--------- 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-RELKPDVVLLDLSMPGMDGLEALKQLRAR--------- 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh-hhcCCCEEEEcCCCCCCChHHHHHHHHHH---------
Confidence 69999999999999999998876 7755 577799999986 46789999999999999999999999963
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.++++|+++|++.+.+...+++++|++||+.|..+.++|.++|+..+..
T Consensus 72 -------------~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 72 -------------GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred -------------CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4578999999999999999999999999999999999999999986544
No 62
>PLN03029 type-a response regulator protein; Provisional
Probab=99.61 E-value=6.7e-15 Score=153.90 Aligned_cols=118 Identities=26% Similarity=0.409 Sum_probs=104.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCC-------------------CCccEEEEeCCCCCCCH
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-------------------HQFDACFMDIQMPEMDG 784 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~-------------------~~~DlilmDi~MP~mdG 784 (871)
..+||||||++.++..+..+|+..|+.|.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 35899999999999999999999999999999999999987421 24789999999999999
Q ss_pred HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh
Q 002879 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 861 (871)
Q Consensus 785 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~ 861 (871)
+++++.||+.. ....+|||++|+....+...+|+++|+++|+.||++..+|...+..
T Consensus 88 ~e~l~~ir~~~--------------------~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 88 YDLLKKIKESS--------------------SLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred HHHHHHHHhcc--------------------ccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHH
Confidence 99999999732 1246899999999999999999999999999999999999766554
No 63
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.57 E-value=3.7e-14 Score=148.80 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=103.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..+...|... |+. |..+.++.+|++.+. ...||+|++|+.||++||+++++.||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~-~~~pdlvllD~~mp~~~gle~~~~l~~~-------- 75 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-RFKPGLILLDNYLPDGRGINLLHELVQA-------- 75 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhc--------
Confidence 58999999999999999999874 774 678999999999985 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
.+.+|||++|+..+.+...+++++|++||+.||++.++|..+|+++
T Consensus 76 --------------~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~ 121 (225)
T PRK10046 76 --------------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 (225)
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHH
Confidence 2357899999999999999999999999999999999999999774
No 64
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.56 E-value=6.2e-14 Score=146.30 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=106.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||+++|+++++.||+.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQW---------- 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcC----------
Confidence 37999999999999999999999999999999999998874 4679999999999999999999999852
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+|||++|+....+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 71 -------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 71 -------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 25899999999999999999999999999999999999999987664
No 65
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.56 E-value=5.6e-14 Score=160.76 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=92.3
Q ss_pred EEecHHHHHHHHHHHHHHhhccCCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 002879 384 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 459 (871)
Q Consensus 384 v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (871)
+.++...|.|++.|||+||++|++.+ .|.|.+....
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~---------------------------------------- 69 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD---------------------------------------- 69 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc----------------------------------------
Confidence 34567889999999999999999764 3555443210
Q ss_pred CCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC--CCCCCcccccHHHHHHHHHHcCCE-EEEEEeC
Q 002879 460 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 536 (871)
Q Consensus 460 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--~~~~~GtGLGLsI~k~lv~~~gG~-I~v~S~~ 536 (871)
.+...+.|+|+|+|+||+++.++++|++|++.+... ....||+||||++|+.++++|+|. |++.|.+
T Consensus 70 ----------~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~ 139 (535)
T PRK04184 70 ----------EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISST 139 (535)
T ss_pred ----------CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEec
Confidence 011246799999999999999999999997654322 234578999999999999999997 9999999
Q ss_pred CCeE-EEEEEEEeCC
Q 002879 537 NIGS-TFTFTAVFGN 550 (871)
Q Consensus 537 g~Gs-~F~~~lp~~~ 550 (871)
+.|+ .|+|++++..
T Consensus 140 ~~g~~~~~~~l~id~ 154 (535)
T PRK04184 140 GGSKKAYYFELKIDT 154 (535)
T ss_pred CCCceEEEEEEEecc
Confidence 9998 8999988753
No 66
>PRK11173 two-component response regulator; Provisional
Probab=99.55 E-value=8.6e-14 Score=146.81 Aligned_cols=116 Identities=23% Similarity=0.372 Sum_probs=106.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-ENDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+|||++|+.........++++|+++|+.||++.++|...+...+.
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 25899999999999999999999999999999999999988876654
No 67
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.54 E-value=1.5e-13 Score=143.40 Aligned_cols=117 Identities=28% Similarity=0.435 Sum_probs=107.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||+|||++..+..+...|+..|+.|..+.++.+|+..+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~lr~~----------- 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999885 5679999999999999999999999962
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+..+.+....++++|++||+.||++..+|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 2468999999999999999999999999999999999999999877653
No 68
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.53 E-value=1.8e-13 Score=143.20 Aligned_cols=116 Identities=28% Similarity=0.471 Sum_probs=107.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..+...|+..|+.|.++.++.+|++.+. ...||+|++|+.||.++|+++++.+|+.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~~~~~~g~~~~~~lr~~----------- 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWDIVRMLRSA----------- 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999874 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.+|||++|+....+...+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 70 -----------NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999999987664
No 69
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.52 E-value=2.4e-13 Score=143.43 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=108.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~--------- 74 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-RESFHLMVLDLMLPGEDGLSICRRLRSQ--------- 74 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999874 5679999999999999999999999963
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+....+....++++|+++|+.||++.++|...+...+..
T Consensus 75 -------------~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 75 -------------NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred -------------CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999877653
No 70
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.52 E-value=1.9e-13 Score=142.13 Aligned_cols=115 Identities=26% Similarity=0.372 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||+|||++..+..+...|...|+.|..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-NQHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
+.+|||++|+..+.....+++++|++||+.||++.++|...+...+
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~ 117 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLL 117 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999998887654
No 71
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.52 E-value=2.3e-13 Score=141.24 Aligned_cols=116 Identities=28% Similarity=0.476 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|+++++.||..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~----------- 69 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-SGHYSLVVLDLGLPDEDGLHLLRRWRQK----------- 69 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999884 4679999999999999999999999863
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+....+....++++|++||+.||++.++|...+.....
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 70 -----------KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999999887654
No 72
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.52 E-value=7.3e-14 Score=145.36 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=115.2
Q ss_pred HHHHHHhhhhhccCccceeeecccCcchHHHHHHHhCceee-eecccccCCCCCCCC-CCCCCceeeeEeec--CC-Cce
Q 002879 3 FTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIK-RMDTFEHNPVHKDEP-SPIEEEYAPVIFAQ--DT-VSH 77 (871)
Q Consensus 3 f~~~~~~~~~~~p~~~~~~~~~~v~~~~r~~fe~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~y~pv~~~~--~~-~~~ 77 (871)
|..|+. ++..--.+.|+.|..+|...+++.||..+-..+. ....+..+..++..| ...+++|+||-|.+ .. |..
T Consensus 86 Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl~~~N~~ 164 (348)
T COG3614 86 FRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPLNYDNRK 164 (348)
T ss_pred HHHhhh-hhcccccchhhhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCCCccchh
Confidence 666666 6777778899999999999999999975422222 222222222344567 77888999997754 44 778
Q ss_pred EEeeccCCChhchHHHHHHHhcCCceeeccccccccC-----CceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecch
Q 002879 78 VISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN-----RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDI 152 (871)
Q Consensus 78 ~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~-----~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v 152 (871)
++||||.|+|.||+|+..|+++++..+|+|++|+|.. ..|++++.|||+.+.++...+. ...++||++..+..
T Consensus 165 aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~g--q~~l~Gfl~~~~~~ 242 (348)
T COG3614 165 ALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPG--QAVLVGFLYLATRF 242 (348)
T ss_pred hhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcc--hhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999842 3689999999998765543322 33456888888877
Q ss_pred HHHHH
Q 002879 153 ESLVE 157 (871)
Q Consensus 153 ~~l~~ 157 (871)
.+++.
T Consensus 243 ~~~~q 247 (348)
T COG3614 243 EKLVQ 247 (348)
T ss_pred hhhhh
Confidence 77654
No 73
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.52 E-value=1.8e-13 Score=145.06 Aligned_cols=114 Identities=20% Similarity=0.376 Sum_probs=101.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eAl~~l~~-~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
+||||||++..+..+..+|... |+.+ ..+.++.+|++.+.. ...||+||+|+.||+|||+++++.|++.
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~-------- 74 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-------- 74 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--------
Confidence 7999999999999999999864 6764 478999999988742 3569999999999999999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 861 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~ 861 (871)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|.+
T Consensus 75 --------------~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~ 119 (239)
T PRK10430 75 --------------GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 (239)
T ss_pred --------------CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 246899999999999999999999999999999999999999875
No 74
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.51 E-value=3.1e-14 Score=145.87 Aligned_cols=114 Identities=32% Similarity=0.512 Sum_probs=101.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+|+||||+......+..+|++.|..+-.++...+|++.+. .+.||+||+||.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 7999999999999999999999999999999999999984 688999999999999999999999998753
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+|||++|+++.-.. .++..-.+|||.||++++.|-++|.|..+
T Consensus 72 -------------~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 72 -------------AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred -------------cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 689999999865443 34444458999999999999999998764
No 75
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.51 E-value=2.9e-13 Score=143.05 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=105.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|++||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-REQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999885 5679999999999999999999999962
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+|||++|+........+++++|++||+.||++..+|...+...+.
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 24699999999999999999999999999999999999999987654
No 76
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.50 E-value=3.4e-13 Score=141.20 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=107.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~--------- 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGSGIQFIKHLKRES--------- 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhcc---------
Confidence 58999999999999999999999999999999999999885 46799999999999999999999998631
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+.+|||++|+..+.....+++++|+++|+.||++.++|...+...+.
T Consensus 73 -----------~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 1246899999999999999999999999999999999999998887654
No 77
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.50 E-value=2.9e-13 Score=143.37 Aligned_cols=115 Identities=19% Similarity=0.342 Sum_probs=103.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||+|||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-SETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999884 5679999999999999999999999852
Q ss_pred ccchhhhccCCCCCccEEEEccCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.++|||++|+.. ......+++++|+++|+.||++.++|...+...+.
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 258999999854 66777899999999999999999999998877654
No 78
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.50 E-value=3.8e-13 Score=140.84 Aligned_cols=114 Identities=27% Similarity=0.459 Sum_probs=104.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..+...|+..|+.+..+.++.+|++.+. ..||+|++|+.||+++|+++++.||+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l~~~----------- 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKELRQT----------- 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999874 369999999999999999999999862
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
. .+|||++|+........+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~-~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 70 -----------H-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred -----------C-CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 1 3899999999999999999999999999999999999999987654
No 79
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.50 E-value=4.2e-13 Score=139.52 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=108.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~g~~~~~~l~~~~--------- 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERGPDLILLDWMLPGTSGIELCRRLRRRP--------- 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-hcCCCEEEEECCCCCCcHHHHHHHHHccc---------
Confidence 47999999999999999999999999999999999999884 46799999999999999999999998632
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+.+|||++|+..+.....+++++|+++|+.||++.++|..++...+..
T Consensus 73 -----------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 73 -----------ETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred -----------cCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 12468999999999999999999999999999999999999999876543
No 80
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.49 E-value=6.5e-13 Score=138.16 Aligned_cols=116 Identities=26% Similarity=0.454 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||+|||++..+..+...|...|+.+.++.++.+|+..+. ...||+|++|+.||+++|+++++.||+.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 6999999999999999999999999999999999999884 5679999999999999999999999862
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+|||++|+....+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 257999999999999999999999999999999999999999876643
No 81
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.49 E-value=5.5e-13 Score=138.18 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=106.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~i~~~----------- 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGRDILREWREK----------- 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999875 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.+|||++|+....+....++++|+++|+.||++.++|..++...+.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 70 -----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999988887654
No 82
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.48 E-value=4.9e-13 Score=139.70 Aligned_cols=117 Identities=26% Similarity=0.345 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~ 802 (871)
++||||||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||. ++|+++++.||..
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~~~g~~~~~~i~~~-------- 71 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-QRLPDLAIIDIGLGEEIDGGFMLCQDLRSL-------- 71 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-hCCCCEEEEECCCCCCCCCHHHHHHHHHhc--------
Confidence 47999999999999999999999999999999999999884 467999999999997 5899999999963
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+....+....++++|+++|+.||++.++|..++...+.
T Consensus 72 --------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 72 --------------SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred --------------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999988877553
No 83
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.48 E-value=5.3e-13 Score=143.37 Aligned_cols=119 Identities=26% Similarity=0.332 Sum_probs=104.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..+...|... ++.+ .++.+|.+|++.+. ...||+|++|+.||+|||+++++.||+...
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-EQQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 48999999999999999999864 5554 47999999999885 567999999999999999999999997421
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
...+|||++|+........+++++|+++|+.||++.++|...+.++..
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 224799999999999999999999999999999999999999988754
No 84
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.47 E-value=7.8e-13 Score=120.53 Aligned_cols=109 Identities=48% Similarity=0.716 Sum_probs=92.6
Q ss_pred ecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002879 386 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 464 (871)
Q Consensus 386 ~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (871)
+|+..|.+++.|++.||+++... +.|.|.+...+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~--------------------------------------------- 35 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDG--------------------------------------------- 35 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcC---------------------------------------------
Confidence 47899999999999999999976 67776664311
Q ss_pred CCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEE
Q 002879 465 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 544 (871)
Q Consensus 465 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~ 544 (871)
..+.|.|.|+|.|++++...++|.+++.... .....++.|+||++|+.+++.|+|++.+.+.++.|++|+|
T Consensus 36 --------~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 106 (111)
T smart00387 36 --------DHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTI 106 (111)
T ss_pred --------CEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 2467999999999999999999999987543 2334567999999999999999999999999899999999
Q ss_pred EEEe
Q 002879 545 TAVF 548 (871)
Q Consensus 545 ~lp~ 548 (871)
.+|+
T Consensus 107 ~~~~ 110 (111)
T smart00387 107 TLPL 110 (111)
T ss_pred EeeC
Confidence 9986
No 85
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.46 E-value=1.2e-12 Score=135.40 Aligned_cols=116 Identities=27% Similarity=0.465 Sum_probs=106.0
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccc
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 806 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 806 (871)
||++||++..+..+...|...|+.+..+.++.++++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~------------ 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-KDDYDLIILDVMLPGMDGWQILQTLRRS------------ 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcc------------
Confidence 589999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 807 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 807 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|...+.+.+..
T Consensus 68 ----------~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 68 ----------GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred ----------CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2468999999999999999999999999999999999999999876543
No 86
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.46 E-value=8.8e-13 Score=122.66 Aligned_cols=116 Identities=24% Similarity=0.332 Sum_probs=107.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
+..|||||+....+.+...+++.||.|.++.+..||+..++ ...|...+.|+.|-+.+|++.++.||+.
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-t~~PayAvvDlkL~~gsGL~~i~~lr~~---------- 78 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-TAPPAYAVVDLKLGDGSGLAVIEALRER---------- 78 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-cCCCceEEEEeeecCCCchHHHHHHHhc----------
Confidence 46999999999999999999999999999999999999985 5789999999999999999999999984
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.....||++|++.+..+..++.+.|+++||.||-+.++++.++.+--
T Consensus 79 ------------~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~ 125 (182)
T COG4567 79 ------------RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRRE 125 (182)
T ss_pred ------------CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcC
Confidence 34678999999999999999999999999999999999999987763
No 87
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.45 E-value=1.8e-12 Score=135.13 Aligned_cols=117 Identities=26% Similarity=0.406 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQLLAF---------- 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999874 5679999999999999999999999963
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.+|||++|+.........++++|+++|+.||++.++|..++...+.
T Consensus 73 ------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 73 ------------HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred ------------CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 246899999999998899999999999999999999999998887654
No 88
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.45 E-value=1.2e-12 Score=136.28 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=104.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC-E-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCC---CCHHHHHHHHHhhhcccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPE---MDGFEATKIIREMEHNFN 799 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~-~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~---mdG~e~~~~IR~~~~~~~ 799 (871)
.+||||||++..+..++.+|+..++ . +..+.++.++++.+. ...||+||+|+.||+ ++|++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~----- 77 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYIKRH----- 77 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH-----
Confidence 4899999999999999999988664 3 667899999999884 467999999999999 5999999999863
Q ss_pred ccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 800 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 800 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+.........++++|+++|+.||++.++|..+|+....
T Consensus 78 -----------------~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 -----------------FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred -----------------CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 346899999999999999999999999999999999999999987544
No 89
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.42 E-value=2.7e-12 Score=135.06 Aligned_cols=116 Identities=31% Similarity=0.455 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||+|||++..+..+...|...|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.|++.
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~---------- 75 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-KEQPDLVILDVMMPKLDGYGVCQEIRKE---------- 75 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999874 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
+++|||++|+....+...+++++|+++|+.||++.++|...+.....
T Consensus 76 -------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 76 -------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred -------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999998876543
No 90
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.42 E-value=2e-12 Score=150.93 Aligned_cols=116 Identities=27% Similarity=0.371 Sum_probs=107.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..+..+|...|+.|..+.++.+|+..+. ...||+||+|+.||++||+++++.||+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-~~~~DlvllD~~lp~~dgl~~l~~ir~~---------- 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-SKTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEECCCCCCCCHHHHHHHHHhh----------
Confidence 48999999999999999999999999999999999999985 5679999999999999999999999863
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+|||++|+....+...+|+++|+++|+.||++.++|...+.+.+
T Consensus 73 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 119 (469)
T PRK10923 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 (469)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999887654
No 91
>PRK14084 two-component response regulator; Provisional
Probab=99.42 E-value=2.6e-12 Score=136.47 Aligned_cols=113 Identities=27% Similarity=0.348 Sum_probs=98.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcC-C-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYG-A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g-~-~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+||||||++..+..+..+|+..+ + .+..+.++.+|+..+. .+.||+||+|++||+|+|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-~~~~dlv~lDi~m~~~~G~~~~~~i~~~--------- 71 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-INQYDIIFLDINLMDESGIELAAKIQKM--------- 71 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 69999999999999999999876 4 5778999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
....|||++|+.. +...++++.|+++|+.||++.++|.+++.++.
T Consensus 72 -------------~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 72 -------------KEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred -------------CCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 2356799999864 35668999999999999999999999998865
No 92
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.42 E-value=2.6e-12 Score=149.51 Aligned_cols=118 Identities=35% Similarity=0.499 Sum_probs=108.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..+...|...|+.|.++.++.+|+..+. ...||+|++|+.||.|+|+++++.|++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlillD~~~p~~~g~~ll~~i~~~--------- 73 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-DIHPDVVLMDIRMPEMDGIKALKEMRSH--------- 73 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 458999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.+|||++|+....+...+|+++|++||+.||++.++|...+.+.+.
T Consensus 74 -------------~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 74 -------------ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 246899999999999999999999999999999999999999987654
No 93
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.42 E-value=3.5e-12 Score=130.80 Aligned_cols=116 Identities=16% Similarity=0.304 Sum_probs=105.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
+||+|||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||.++|+++++.++..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKR---------- 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 699999999999999999999999987 6999999999885 4679999999999999999999999863
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+..|||++|+........+++++|+++|+.||++.++|...+.....
T Consensus 71 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 71 ------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 235789999999999999999999999999999999999999988754
No 94
>PRK15115 response regulator GlrR; Provisional
Probab=99.40 E-value=2.2e-12 Score=149.52 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=107.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++.++..+...|+..|+.|..+.++.+|+..+. ...||+||+|+.||+|||+++++.|++.
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-~~~~dlvilD~~lp~~~g~~ll~~l~~~---------- 74 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-REKVDLVISDLRMDEMDGMQLFAEIQKV---------- 74 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.+|||++|+....+...+++++|+++|+.||++.++|...|.+...
T Consensus 75 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 75 ------------QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred ------------CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999987653
No 95
>PRK09483 response regulator; Provisional
Probab=99.39 E-value=4.8e-12 Score=131.11 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=105.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+||||||++..+..+..+|+.. |+.+. .+.++.+++..+. ...||+|++|+.||+++|+++++.|++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~--------- 72 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-TNAVDVVLMDMNMPGIGGLEATRKILRY--------- 72 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999874 78876 7899999999885 5679999999999999999999999863
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|..........++..|+++|+.||++.++|..++.++...
T Consensus 73 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 73 -------------TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3468999999999999999999999999999999999999999887654
No 96
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.39 E-value=2.6e-12 Score=148.90 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=103.0
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-----CCHHHHHHHHHhhhcccccc
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-----MDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~-----mdG~e~~~~IR~~~~~~~~~ 801 (871)
||||||++.++..+...| .||.|.++.++.+|++.+. ...||+||+|+.||+ |||++++++|++.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~-~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~------- 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR-RHEPAVVTLDLGLPPDADGASEGLAALQQILAI------- 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh-------
Confidence 689999999999999988 7999999999999999985 567999999999996 9999999999873
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+..+.+...+|+++|++||+.||++.++|...|.+.+.
T Consensus 71 ---------------~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 ---------------APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ---------------CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 346899999999999999999999999999999999999998876543
No 97
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.39 E-value=3.6e-12 Score=142.12 Aligned_cols=114 Identities=28% Similarity=0.341 Sum_probs=98.2
Q ss_pred eEEEEeCCHHHHHHHHHHHH-HcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLK-RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~-~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+||||||++..+..++.+|. ..|+.+. .+.++.+|++.+. ...||+|+||+.||+|||++++++|++.
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-~~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-AQPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-ccCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 79999999999999999994 5688876 6899999999985 5679999999999999999999999862
Q ss_pred ccccchhhhccCCCCCccEEEEccCCC--HHHHHHHHHcCCCEEEeCCC---------CHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPF---------EAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~~G~d~yl~KP~---------~~~~L~~~l~~~~ 863 (871)
.++|||++|+... .+...+|+++|+++|+.||+ ..++|...|++..
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 2479999998754 45667899999999999999 6677888877654
No 98
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.38 E-value=2.1e-12 Score=108.52 Aligned_cols=66 Identities=38% Similarity=0.748 Sum_probs=61.9
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMD-TELDVTQ-QDYVRTAQASGKALVSLINEVLDQAKVESG 339 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~-~~l~~~~-~~~l~~i~~~~~~L~~lIndlLd~skie~g 339 (871)
+|.+|++++||||||||++|.+++++|.+ ...++++ ++|++.+..++++|..+|+++++++|+++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999999 7788888 999999999999999999999999999987
No 99
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.38 E-value=2.6e-12 Score=148.78 Aligned_cols=116 Identities=31% Similarity=0.478 Sum_probs=106.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..+...|+..|+.+.++.++.+|+..+. ...||+||+|+.||+|+|+++++.||+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~DlvilD~~m~~~~G~~~~~~ir~~---------- 74 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIATLKEIKAL---------- 74 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|++...+...+++++|+++|+.||++.++|...+.+.+
T Consensus 75 ------------~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l 121 (441)
T PRK10365 75 ------------NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999998887654
No 100
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.38 E-value=6.9e-12 Score=127.78 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=101.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~-g~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+||||||++..+..+...|... ++. +..+.++.++++.+. .+.||+|++|+.||+++|+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999754 565 567899999999885 567999999999999999999988863
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+|||++|.....+....|+++|+++|+.||++.++|..++.+....
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999987653
No 101
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.38 E-value=4.8e-12 Score=133.67 Aligned_cols=114 Identities=24% Similarity=0.280 Sum_probs=96.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC-E-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~-~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..+..+|+..|. . +..+.++.+|++.+. ...||++|+|++||+|||+++++.++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlv~lDi~~~~~~G~~~~~~l~~~-------- 72 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-RLKPDVVFLDIQMPRISGLELVGMLDPE-------- 72 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHhccc--------
Confidence 3799999999999999999998883 3 456899999999875 4679999999999999999999988631
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
...+||++|+.. +...++++.|+++|+.||++.++|..++.++..
T Consensus 73 ---------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 ---------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ---------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 134688899864 456789999999999999999999999988753
No 102
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.38 E-value=8.7e-12 Score=128.17 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=104.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..+...|+.. ++.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.|+..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~-------- 74 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRIKQI-------- 74 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHh--------
Confidence 47999999999999999999876 57775 6889999998874 5679999999999999999999999963
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+.+|||++|+.........++++|+++|+.||++.++|..++...+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 75 --------------QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred --------------CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 2358999999999999999999999999999999999999999876554
No 103
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.37 E-value=4.2e-12 Score=147.99 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=105.3
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccc
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 806 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 806 (871)
||||||++..+..+...|+..|+.|..+.++.+|+..+. ...||+|++|+.||+|||+++++.|++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlVllD~~~p~~~g~~ll~~l~~~------------ 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-RGQPDLLITDVRMPGEDGLDLLPQIKKR------------ 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHHh------------
Confidence 689999999999999999999999999999999999885 5679999999999999999999999873
Q ss_pred cchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 807 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 807 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+|||++|+........+|+++|+++|+.||++.++|...+.+.+
T Consensus 68 ----------~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 68 ----------HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred ----------CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998754
No 104
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.37 E-value=1.3e-11 Score=130.02 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..+...|...|+.+..+.++.+|+..+. ...||+|++|+.||.++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 5679999999999999999999999852
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+|||+++..........++++|+++|+.||++.++|...+...+.
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 25899999999988889999999999999999999999988877654
No 105
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.34 E-value=1.9e-11 Score=126.70 Aligned_cols=116 Identities=32% Similarity=0.494 Sum_probs=105.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||++||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||.++|+++++.|+..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~vild~~~~~~~~~~~~~~i~~~----------- 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-SEMYALAVLDINMPGMDGLEVLQRLRKR----------- 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999998874 4679999999999999999999999863
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|.....+...+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 70 -----------GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred -----------CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999998877554
No 106
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.34 E-value=7.1e-12 Score=152.85 Aligned_cols=401 Identities=21% Similarity=0.247 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Q 002879 264 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM-DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 342 (871)
Q Consensus 264 ~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~-~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~ 342 (871)
.++++..+..++..++..++|..|+|++++++.+..+. ...+...+.-.+++..+....+..+++.-.+.++...|.-.
T Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~ 454 (786)
T KOG0519|consen 375 AKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGL 454 (786)
T ss_pred hhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcc
Confidence 34445555666778888888999999999999988544 33444455555677788888899999999999998888777
Q ss_pred eEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhc--cCCCCeE-EEEEEEee
Q 002879 343 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK--FTEKGHI-FVTVYLVE 419 (871)
Q Consensus 343 l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiK--fT~~G~I-~v~v~~~~ 419 (871)
.+...+.+..++...+.........+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..|+= .+.+....
T Consensus 455 ~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 534 (786)
T KOG0519|consen 455 GESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAEL 534 (786)
T ss_pred cchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecc
Confidence 78888999999999999999888888888988888888889999999999999999999999 8877732 23332210
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccccc
Q 002879 420 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 499 (871)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 499 (871)
- ...+++...+ ...-|. .........+.+.+++++.|+.....+..|.-|.
T Consensus 535 ~-~~~vd~~~~~--------------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 585 (786)
T KOG0519|consen 535 L-GISVDVSLSL--------------SLAFWF--------------LDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHK 585 (786)
T ss_pred c-Cccccccccc--------------hhhhhh--------------cccccccchheEEeeeccccccCCCcchhhhhhh
Confidence 0 0000000000 000010 0011111357899999999999999998888888
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEE-eCCC----eEEEEEEEEeCCCCCCCCccccccccCCCCCCCccc
Q 002879 500 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-IPNI----GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 574 (871)
Q Consensus 500 q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S-~~g~----Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (871)
+....+++...+.+++++.|++..+.++|.+++.- ..+. -+.+.+............... .............+
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~l 664 (786)
T KOG0519|consen 586 SLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSG-NPEKLAEPRDSKLL 664 (786)
T ss_pred ccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCC-CcccccCccccccc
Confidence 77666665557889999999999999999998762 1111 011111110000000000000 00001111134557
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
+|.++|+||++++++.|....|..+|..+..+.++.+|+..+. ....++++++|..+...++ .....++|+.....
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG---~e~~~~irk~~~~~ 740 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDG---YEATREIRKKERWH 740 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccch---HHHHHHHHHhhcCC
Confidence 8999999999999999999999999999999999999999887 5578999999998887776 33344555544322
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.|.+.+.++ ..+.... .....|...++.||+....+..++++.+
T Consensus 741 ~pIvAlTa~-~~~~~~~-~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 741 LPIVALTAD-ADPSTEE-ECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCEEEEecC-CcHHHHH-HHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 244434333 2222222 2234488899999999999999888765
No 107
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.34 E-value=5.5e-12 Score=143.06 Aligned_cols=111 Identities=24% Similarity=0.381 Sum_probs=86.6
Q ss_pred EEecHHHHHHHHHHHHHHhhccCCC-C---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 002879 384 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 459 (871)
Q Consensus 384 v~~D~~rl~qIl~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (871)
+.+|...|.|++.||++||++|+.. | .|.|.+...
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~----------------------------------------- 60 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI----------------------------------------- 60 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----------------------------------------
Confidence 4568999999999999999999865 4 355444210
Q ss_pred CCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC--CCCCCcccccHHHHHHHHHHcCCE-EEEEEeC
Q 002879 460 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 536 (871)
Q Consensus 460 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--~~~~~GtGLGLsI~k~lv~~~gG~-I~v~S~~ 536 (871)
+...+.|+|+|+|+||+++.++++|++|++.+... ....||.|+||++|+.++++|+|. +.+.|..
T Consensus 61 -----------g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 61 -----------GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred -----------CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 01235799999999999999999999998765432 234578999999999999999999 9999998
Q ss_pred CCeEEEEEEEE
Q 002879 537 NIGSTFTFTAV 547 (871)
Q Consensus 537 g~Gs~F~~~lp 547 (871)
+ |+.|...+.
T Consensus 130 ~-g~~~~~~~~ 139 (488)
T TIGR01052 130 G-GEIYVYKMK 139 (488)
T ss_pred C-CceEEEEEE
Confidence 7 666633333
No 108
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.34 E-value=8.7e-12 Score=145.23 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=86.8
Q ss_pred hhcCCEEEEEeCCCCCceEE--ecHHHHHHHHHHHHHHhhccCCCCe----EEEEEEEeeccccchhhhhhhccccCcCC
Q 002879 366 QDKGVELAVYISDRVPETLI--GDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLS 439 (871)
Q Consensus 366 ~~k~i~l~~~~~~~~p~~v~--~D~~rl~qIl~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 439 (871)
..+.+.+...+..+.+ .+. .|...|.+++.|||+||+||+..++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~-~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~---------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKH-MLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE---------------------- 77 (795)
T ss_pred hccccceeeecccCcc-eeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE----------------------
Confidence 4567888777765543 233 3577899999999999999997654 4444421
Q ss_pred CCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCC----CCCCCCccccc
Q 002879 440 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS----ISRTHGGTGIG 515 (871)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s----~~~~~~GtGLG 515 (871)
....+.|.|+|+|+||++++++++|++|++.+.- .++...|.|||
T Consensus 78 -------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLg 126 (795)
T PRK14868 78 -------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGIS 126 (795)
T ss_pred -------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehH
Confidence 1124689999999999999999999999865421 12333455555
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCC---eEEEEEEE
Q 002879 516 LSISKYLVGRMKGEIGFVSIPNI---GSTFTFTA 546 (871)
Q Consensus 516 LsI~k~lv~~~gG~I~v~S~~g~---Gs~F~~~l 546 (871)
|++|...+ .+||.|.+.|..+. |+.|.+.+
T Consensus 127 lai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~I 159 (795)
T PRK14868 127 AAVLYSQL-TSGKPAKITSRTQGSEEAQYFELII 159 (795)
T ss_pred HHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEE
Confidence 55555555 36888999999754 33345554
No 109
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.33 E-value=1.6e-11 Score=127.45 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=93.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH-HHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT-KIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~-~~IR~~~~~~~~~~ 802 (871)
..++++|||+|+....++..|...-..+..+.++.+|++.+. .||+||||+.||++||++++ +.||..
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~-------- 78 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRK-------- 78 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHh--------
Confidence 357999999999999999999843334557789999998753 39999999999999999997 567763
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~--~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.++||++|+... ....++. +|++||+.|+.+.++|.++|+..+.
T Consensus 79 --------------~p~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 79 --------------NNNIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred --------------CCCCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 34689999999866 3345555 5999999999999999999986544
No 110
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.32 E-value=2.3e-11 Score=136.72 Aligned_cols=114 Identities=25% Similarity=0.363 Sum_probs=96.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++.++..+..+|... |+.+. .+.++.+|++.+. ...||+|++|++||.|||++++++|++.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-~~~~DlVllD~~mp~~dgle~l~~i~~~-------- 74 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-KLNPDVITLDVEMPVMDGLDALEKIMRL-------- 74 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-hhCCCEEEEeCCCCCCChHHHHHHHHHh--------
Confidence 48999999999999999999876 78877 8999999999884 5679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCccEEEEccCC--CHHHHHHHHHcCCCEEEeCCCCH---------HHHHHHHhhh
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADV--IQATYEECLRSGMDGYVSKPFEA---------EQLYREVSRF 862 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~--~~~~~~~~~~~G~d~yl~KP~~~---------~~L~~~l~~~ 862 (871)
. .+|||++|+.. ......+++++|++||+.||++. ++|...++..
T Consensus 75 --------------~-~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~ 130 (354)
T PRK00742 75 --------------R-PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAA 130 (354)
T ss_pred --------------C-CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHH
Confidence 1 28999999754 34667789999999999999953 5566666544
No 111
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.31 E-value=1.9e-11 Score=125.95 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=89.5
Q ss_pred HHHHHHHHHH---cCCEEEEEcCHHHHHHHhCCCCCccEEE---EeCCCCCCCHHHHHHHHHhhhccccccccccccchh
Q 002879 737 LKVAAAGLKR---YGAAVVCVERGKKATELLMPPHQFDACF---MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 737 ~~~l~~~L~~---~g~~v~~a~~g~eAl~~l~~~~~~Dlil---mDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
|..++.+|.. .|+.|.++.++.++++.+. ...||+++ +|+.||+|||++++++|++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~---------------- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-RISFSAVIFSLSAMRSERREGLSCLTELAIK---------------- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-cCCCCEEEeeccccCCCCCCHHHHHHHHHHH----------------
Confidence 5677888865 5677789999999999885 56799998 78899999999999999873
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECL-RSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~-~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+.+|||++|+........+++ ++|++|||.||++.++|..+|+..+..
T Consensus 66 ------~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 66 ------FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 3568999999987776666655 799999999999999999999976554
No 112
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.29 E-value=3.6e-11 Score=122.09 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.|++.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~ii~d~~~~~~~~~~~~~~l~~~---------- 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-GLRFGCVVTDVRMPGIDGIELLRRLKAR---------- 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-cCCCCEEEEeCCCCCCcHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999998875 5679999999999999999999999863
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+.........++++|+++|+.||++.++|...+...+.
T Consensus 73 ------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 73 ------------GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999888776543
No 113
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.28 E-value=1.8e-11 Score=132.44 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=90.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g--~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
|||||||....|++++.+|...| ..|-++.||.+|++++. ...||+|.||+.||.|||++++++|-+.
T Consensus 3 rVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~-~~~PDVi~ld~emp~mdgl~~l~~im~~--------- 72 (350)
T COG2201 3 RVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK-KLKPDVITLDVEMPVMDGLEALRKIMRL--------- 72 (350)
T ss_pred EEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH-hcCCCEEEEecccccccHHHHHHHHhcC---------
Confidence 89999999999999999999998 45668999999999995 5789999999999999999999999752
Q ss_pred ccccchhhhccCCCCCccEEEEccCCC--HHHHHHHHHcCCCEEEeCCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFE 851 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~~G~d~yl~KP~~ 851 (871)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 --------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 --------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred --------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 3689999877444 466778999999999999984
No 114
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.28 E-value=3.7e-11 Score=107.63 Aligned_cols=101 Identities=46% Similarity=0.591 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhccCC--CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCC
Q 002879 391 FRQIITNLMGNSIKFTE--KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 468 (871)
Q Consensus 391 l~qIl~NLl~NAiKfT~--~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (871)
|.+++.+|++||++|.. .+.|.|.+...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~-------------------------------------------------- 30 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD-------------------------------------------------- 30 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec--------------------------------------------------
Confidence 46899999999999997 45555554321
Q ss_pred CCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 002879 469 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 546 (871)
Q Consensus 469 ~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~l 546 (871)
...+.|.|.|+|.|+++..+++.|.+|. ........++.|+||++|+++++.|||++++.+..+.|++|++++
T Consensus 31 ---~~~~~v~i~d~g~g~~~~~~~~~~~~~~--~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 31 ---GDHLEIRVEDNGPGIPEEDLERIFERFS--DGSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred ---CCEEEEEEEeCCCCCCHHHHHHHhhhhh--cCCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 1247899999999999999999999882 112223446899999999999999999999999988999998863
No 115
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.27 E-value=2.5e-11 Score=141.67 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=88.2
Q ss_pred EecHHHH---HHHHHHHHHHhhccCCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 002879 385 IGDPGRF---RQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 457 (871)
Q Consensus 385 ~~D~~rl---~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (871)
.|++..+ .+|+.||++||++|+..+ .|.|.+...
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~--------------------------------------- 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL--------------------------------------- 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC---------------------------------------
Confidence 4455555 499999999999998653 455554311
Q ss_pred CCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC--CCCCCcccccHHHHHHHHHHc-CCEEEEEE
Q 002879 458 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRM-KGEIGFVS 534 (871)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--~~~~~GtGLGLsI~k~lv~~~-gG~I~v~S 534 (871)
+...+.|+|+|+|+|||++.++++|++|+..+.-. ....|+.|+||+++..+++++ ||.+.+.|
T Consensus 69 -------------g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S 135 (659)
T PRK14867 69 -------------GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITT 135 (659)
T ss_pred -------------CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEE
Confidence 11246799999999999999999999998643311 134578999999999999886 55699999
Q ss_pred eCCCeEEEEEEEEeCC
Q 002879 535 IPNIGSTFTFTAVFGN 550 (871)
Q Consensus 535 ~~g~Gs~F~~~lp~~~ 550 (871)
.++.|++|++.+|+..
T Consensus 136 ~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 136 STGDGKIHEMEIKMSV 151 (659)
T ss_pred EcCCCEEEEEEEEEEe
Confidence 9999999999998854
No 116
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.26 E-value=6.8e-11 Score=136.93 Aligned_cols=117 Identities=28% Similarity=0.428 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||+|||++..+..+...|...|+.+.++.++.+++..+. ...||+|++|+.||+++|+++++.||+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~l~~~i~~~~---------- 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-REQPDIILLDVMMPGMDGFEVCRRLKSDP---------- 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 7999999999999999999999999999999999999885 56799999999999999999999998631
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+.+|||++|+........+++++|+++|+.||++.++|..++.+..
T Consensus 73 ----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 120 (457)
T PRK09581 73 ----------ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred ----------ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999998887653
No 117
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.26 E-value=2.9e-11 Score=118.65 Aligned_cols=112 Identities=29% Similarity=0.381 Sum_probs=95.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.++|++||++.++..+...|...||.++ ++.+|.++.+... .+.||+||||+.||.-|-.+.... .+
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~~~~-~~---------- 73 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEALLL-AS---------- 73 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHHHHH-hh----------
Confidence 5899999999999999999999999654 7889999998874 688999999999999994333322 22
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 860 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~ 860 (871)
.+...|||++|++.+++..+.+.++|+.+||.||++...|+..|.
T Consensus 74 ------------~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 74 ------------ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred ------------cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 134579999999999999999999999999999999998877664
No 118
>PRK13435 response regulator; Provisional
Probab=99.26 E-value=1e-10 Score=113.62 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=98.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+|||+||++.....+...|+..|+.+. ++.++.++++.+. ...||+|++|+.|+ .++|.+..+.+++.
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-RRQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-hcCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999877 7899999999874 45799999999998 59999999988752
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.++|||+++.... ...++.+|+++|+.||++.++|.+.|.++..
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2589999997643 3568889999999999999999999988754
No 119
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.25 E-value=5.4e-11 Score=114.69 Aligned_cols=98 Identities=14% Similarity=0.329 Sum_probs=76.9
Q ss_pred ecHHHHHHHHHHHHHHhhccCC----CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002879 386 GDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 461 (871)
Q Consensus 386 ~D~~rl~qIl~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (871)
.|...+.+++.|+++||++|+- .|.|.|++...+
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~------------------------------------------ 72 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIED------------------------------------------ 72 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeC------------------------------------------
Confidence 3667899999999999999852 356666654311
Q ss_pred CCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEE
Q 002879 462 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 541 (871)
Q Consensus 462 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~ 541 (871)
..+.++|.|+|.||+ ..+++|+||+..+. ..+|+|+||++++++ .++++++|.++.||+
T Consensus 73 -----------~~~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~ 131 (137)
T TIGR01925 73 -----------HEVYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTK 131 (137)
T ss_pred -----------CEEEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeE
Confidence 247899999999998 37789999986432 235899999998874 579999999999999
Q ss_pred EEEEE
Q 002879 542 FTFTA 546 (871)
Q Consensus 542 F~~~l 546 (871)
|+++.
T Consensus 132 v~i~~ 136 (137)
T TIGR01925 132 IIMKK 136 (137)
T ss_pred EEEEe
Confidence 99863
No 120
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.21 E-value=7.8e-11 Score=143.66 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=102.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++.++..+..+|...|+.|..+.++.+|+..+. ...||+||+|+.||+|+|++++++||..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l~~~---------- 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAVRQT---------- 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHH--HHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE--QLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~--~L~~~l~~~~ 863 (871)
.+.+|||++|+..+.+...+++++|+++|+.||.+.. .+..++.+..
T Consensus 77 ------------~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 77 ------------TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999997643 5555555443
No 121
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.21 E-value=2.5e-10 Score=117.62 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=104.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~l~~~~~~~~~~~l~~~-------- 77 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREK-------- 77 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 48999999999999999999865 5654 46899999999884 4679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|+|++++.........++++|+++|+.||++.++|...+.+....
T Consensus 78 --------------~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 78 --------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999887654
No 122
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.20 E-value=6e-10 Score=103.21 Aligned_cols=119 Identities=32% Similarity=0.451 Sum_probs=104.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||++|+++.....+...|...|+ .+.++.++.+++..+. ...||++++|..+|.++|++..+.+++..
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~~~~-------- 76 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIRADG-------- 76 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHHhCC--------
Confidence 5899999999999999999999998 4778999999999874 46799999999999999999999998631
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+++|+++++..........+++.|+++|+.||++.++|...+.+++.
T Consensus 77 ------------~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 77 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred ------------CcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1246799999988888888999999999999999999999999887653
No 123
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.20 E-value=3.3e-10 Score=116.48 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=102.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHH-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~-~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..+...|+. .++.+. .+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~~~~~~~~l~~~-------- 77 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-RLDPDVILLDLNMKGMSGLDTLNALRRD-------- 77 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 4799999999999999999975 577765 6899999998874 4679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.++.|++++|..........++++|+++|+.||++.++|...+.+...
T Consensus 78 --------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 78 --------------GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred --------------CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 235789999999888899999999999999999999999999887543
No 124
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.20 E-value=3.3e-10 Score=115.73 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=103.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||++||++..+..+...|... ++.+ ..+.++.++++.+. ...||+|++|+.||.++|+++++.+++.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~-------- 74 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQLHQR-------- 74 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH--------
Confidence 58999999999999999999875 4664 47889999998774 5679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|+|++|+.........++.+|+++|+.||++..+|...+......
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 75 --------------WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999876543
No 125
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.17 E-value=3.6e-10 Score=116.87 Aligned_cols=115 Identities=13% Similarity=0.025 Sum_probs=95.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCC---EEEEEcCHHHHHHHhCCCCCccEEEEeCC--CCCCCHHHHHHHHHhhhccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~---~v~~a~~g~eAl~~l~~~~~~DlilmDi~--MP~mdG~e~~~~IR~~~~~~~~ 800 (871)
.||||||++..+..++.+|...++ .|..+.++.+++..+. ...||+||||+. ||.+||.+++++|++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~------ 74 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQIINQ------ 74 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHHHHH------
Confidence 489999999999999999987653 4457899999999874 567999999976 8989999999999873
Q ss_pred cccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHhhhCC
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG-YVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~-yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.+|||++|+........ ++..|.++ |+.|+.+.++|..+|+....
T Consensus 75 ----------------~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 75 ----------------HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred ----------------CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHc
Confidence 3468999999987765543 55566665 89999999999999987654
No 126
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.16 E-value=4.6e-09 Score=125.46 Aligned_cols=142 Identities=25% Similarity=0.413 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHh--hcCCEEEEEeCCCCCceEEecHHHHHHH---HHHHHHHhhccC-------------CCCeE
Q 002879 350 LRAILDDVLSLFSGKSQ--DKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHI 411 (871)
Q Consensus 350 l~~ll~~v~~~~~~~a~--~k~i~l~~~~~~~~p~~v~~D~~rl~qI---l~NLl~NAiKfT-------------~~G~I 411 (871)
+..++...-.+.+..+. .|.++|.+.-.+ ...|+.-|.++ |.+||.||+.|. +.|.|
T Consensus 392 ~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~-----telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I 466 (716)
T COG0643 392 FEQVFSRFPRMVRDLARKLGKQVELVIEGED-----TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTI 466 (716)
T ss_pred HHHHHhhccHHHHHHHHHhCCeeEEEEecCC-----eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceE
Confidence 33444444444444444 456666654322 34588888887 899999999994 13666
Q ss_pred EEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhh-
Q 002879 412 FVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA- 490 (871)
Q Consensus 412 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~- 490 (871)
.++++. ...++.|+|+|+|.||..+.
T Consensus 467 ~L~A~~-----------------------------------------------------~gn~ivIev~DDG~Gid~ekI 493 (716)
T COG0643 467 TLSAYH-----------------------------------------------------EGNNIVIEVSDDGAGIDREKI 493 (716)
T ss_pred EEEEEc-----------------------------------------------------CCCeEEEEEeeCCCCCCHHHH
Confidence 665532 23468999999999999874
Q ss_pred -----------------------HhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 002879 491 -----------------------QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 547 (871)
Q Consensus 491 -----------------------~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp 547 (871)
..-||.|=|.+.... ..-.|-|.||=+||.-++.|||.|.++|++|+||+|++.||
T Consensus 494 ~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~V-tdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LP 572 (716)
T COG0643 494 REKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQV-TDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLP 572 (716)
T ss_pred HHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhh-hcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecC
Confidence 345899965443332 24579999999999999999999999999999999999999
Q ss_pred eCC
Q 002879 548 FGN 550 (871)
Q Consensus 548 ~~~ 550 (871)
+..
T Consensus 573 LTL 575 (716)
T COG0643 573 LTL 575 (716)
T ss_pred cHH
Confidence 853
No 127
>PRK03660 anti-sigma F factor; Provisional
Probab=99.15 E-value=3.6e-10 Score=110.14 Aligned_cols=101 Identities=19% Similarity=0.359 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHHhhccCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002879 387 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 462 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (871)
|...+.+++.|++.||++|... |.|.|++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-------------------------------------------- 71 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-------------------------------------------- 71 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--------------------------------------------
Confidence 6778999999999999998632 4555554321
Q ss_pred CCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 002879 463 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 542 (871)
Q Consensus 463 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F 542 (871)
...+.|.|.|+|.||++ ..++|+||++.+. ...++|+||+|+++ +.+++++++.++.||+|
T Consensus 72 ---------~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~ 132 (146)
T PRK03660 72 ---------EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTVMES----FMDEVEVESEPGKGTTV 132 (146)
T ss_pred ---------CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHHHHH----hCCeEEEEecCCCcEEE
Confidence 12478999999999986 6689999986432 22578999999875 45689999999999999
Q ss_pred EEEEEeCC
Q 002879 543 TFTAVFGN 550 (871)
Q Consensus 543 ~~~lp~~~ 550 (871)
+++.++..
T Consensus 133 ~i~~~~~~ 140 (146)
T PRK03660 133 RMKKYLKK 140 (146)
T ss_pred EEEEEecc
Confidence 99998854
No 128
>PRK09191 two-component response regulator; Provisional
Probab=99.12 E-value=7.7e-10 Score=118.53 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=98.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+|||+||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||+ ++|+++++.+++.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-~~~~dlvi~d~~~~~~~~g~e~l~~l~~~-------- 208 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-KTRPGLILADIQLADGSSGIDAVNDILKT-------- 208 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-ccCCCEEEEecCCCCCCCHHHHHHHHHHh--------
Confidence 5799999999999999999999999887 7899999999885 467999999999995 8999999999862
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
. ++|||++|+...... .+...|+++|+.||++.++|...|.+....
T Consensus 209 --------------~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 209 --------------F-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred --------------C-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 2 689999999765443 344567889999999999999999886543
No 129
>PRK10693 response regulator of RpoS; Provisional
Probab=99.07 E-value=6.9e-10 Score=121.77 Aligned_cols=89 Identities=27% Similarity=0.357 Sum_probs=78.9
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHH
Q 002879 753 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 832 (871)
Q Consensus 753 ~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~ 832 (871)
++.+|.+|++.+. ...||+|++|+.||+|||++++++||+. .+.+|||++|+....+
T Consensus 2 ~a~~g~~al~~l~-~~~pDlVL~D~~mp~~~Gle~~~~ir~~----------------------~~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLG-GFTPDLIICDLAMPRMNGIEFVEHLRNR----------------------GDQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc----------------------CCCCcEEEEECCCCHH
Confidence 5789999999885 4679999999999999999999999973 2368999999999999
Q ss_pred HHHHHHHcCCCEEEeCCC-CHHHHHHHHhhhCC
Q 002879 833 TYEECLRSGMDGYVSKPF-EAEQLYREVSRFFP 864 (871)
Q Consensus 833 ~~~~~~~~G~d~yl~KP~-~~~~L~~~l~~~~~ 864 (871)
...+++++|++||+.||+ +.++|...|.+.+.
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 999999999999999999 58999888876653
No 130
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-07 Score=100.10 Aligned_cols=190 Identities=13% Similarity=0.233 Sum_probs=136.6
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHH
Q 002879 273 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 352 (871)
Q Consensus 273 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ 352 (871)
..+.+...-+-.||-.-+++|.-.+.++++-..+++.+.....|+.-+.++-.-+..+|..-|-. ...+..+.+
T Consensus 301 siRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP~------~LDdL~l~q 374 (497)
T COG3851 301 SIRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRPR------QLDDLTLEQ 374 (497)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccccHHH
Confidence 34455555666788889999998888887765555555556666666666666666665433311 123456788
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecH---HHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhh
Q 002879 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 429 (871)
Q Consensus 353 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~---~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 429 (871)
.+..++..+.. .++||...++...+. ..-|+ .-+.++...+++|-+||.+...|++..+..++
T Consensus 375 ai~~l~~Em~~--~ergihcq~~~~~n~---~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e--------- 440 (497)
T COG3851 375 AIRSLLREMEL--EERGIHCQLDWRINE---TALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE--------- 440 (497)
T ss_pred HHHHHHHHhhh--hhcCeEEEeccccCc---ccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc---------
Confidence 88888887754 577887777654221 11122 24788999999999999999888888765322
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCC
Q 002879 430 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 509 (871)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 509 (871)
.+.++|+|+|+|+|+. .
T Consensus 441 --------------------------------------------~l~Lei~DdG~Gl~~~-------------------~ 457 (497)
T COG3851 441 --------------------------------------------RLMLEIEDDGSGLPPG-------------------S 457 (497)
T ss_pred --------------------------------------------EEEEEEecCCcCCCCC-------------------C
Confidence 4789999999999863 1
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 002879 510 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 547 (871)
Q Consensus 510 ~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp 547 (871)
+-+|.||.=-++=|..+||+++++| ..||...+++|
T Consensus 458 ~v~G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 458 GVQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred CccCcCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 3468999999999999999999999 67999999988
No 131
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-07 Score=106.54 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhcc
Q 002879 354 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 433 (871)
Q Consensus 354 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~ 433 (871)
...+..........-++.+.....+..+..-..-..-+-+|+.--++||+||+..-++.|++...+
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~-------------- 308 (365)
T COG4585 243 VEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTD-------------- 308 (365)
T ss_pred HHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcC--------------
Confidence 333333333333445555555443211111123456789999999999999998888888775321
Q ss_pred ccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCccc
Q 002879 434 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 513 (871)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtG 513 (871)
..++++|.|+|.|.+++.. +.|
T Consensus 309 ---------------------------------------~~l~l~V~DnG~Gf~~~~~-------------------~~~ 330 (365)
T COG4585 309 ---------------------------------------DELRLEVIDNGVGFDPDKE-------------------GGG 330 (365)
T ss_pred ---------------------------------------CEEEEEEEECCcCCCcccc-------------------CCC
Confidence 2488999999999876421 168
Q ss_pred ccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 514 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 514 LGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
+||.=-|+=|+.+||++.+.|.+|+||+.++++|+
T Consensus 331 ~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 331 FGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred cchhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 99999999999999999999999999999999984
No 132
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.02 E-value=4.3e-09 Score=93.32 Aligned_cols=112 Identities=35% Similarity=0.523 Sum_probs=100.0
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccccc
Q 002879 728 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 807 (871)
Q Consensus 728 LvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 807 (871)
|++|+++..+..+...|...|+.+..+.++.+++..+. .+.||++++|..++..+|++..+.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~l~~~------------- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLELLRRIRKR------------- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-hCCCCEEEEecCCCCCchHHHHHHHHHh-------------
Confidence 57899999999999999999999999999999998874 4679999999999999999999999863
Q ss_pred chhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 808 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 808 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
...+|+++++..........++..|+++|+.||++..+|...+.+.
T Consensus 67 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ---------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ---------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2357899999887788888999999999999999999999988764
No 133
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.97 E-value=3.2e-07 Score=95.51 Aligned_cols=194 Identities=22% Similarity=0.302 Sum_probs=132.4
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 353 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~l 353 (871)
.|..++.=+.|-+++-|..|.+++.+-.....++ -.+++...+.-... +.++.+.|--+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~s-la~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQS-LALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHH-HHHHHHHHhcC---------CcceEcHHHH
Confidence 4667888899999999999999988765544443 33333333332222 23455555433 1234677788
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHhhccC----CCCeEEEEEEEeeccccchhhh
Q 002879 354 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVE 428 (871)
Q Consensus 354 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D-~~rl~qIl~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~~~~~ 428 (871)
++.+...+......+.+.+.....+.+ .+--| ..-|--|+.-|++||+||. +.|.|.|+++..+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 887777776654556677776655432 22223 3458889999999999996 36777777654221
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCC
Q 002879 429 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 508 (871)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~ 508 (871)
.....+.|.|+|.|+|.+. + .
T Consensus 157 -------------------------------------------~~~~~l~v~deg~G~~~~~------~----------~ 177 (221)
T COG3920 157 -------------------------------------------GGRFLLTVWDEGGGPPVEA------P----------L 177 (221)
T ss_pred -------------------------------------------CCeEEEEEEECCCCCCCCC------C----------C
Confidence 0035789999999999741 0 0
Q ss_pred CCcccccHHHHHHHH-HHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 509 HGGTGIGLSISKYLV-GRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 509 ~~GtGLGLsI~k~lv-~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
...|+|+.+++.+| ++.||.+...+.. ||+|++++|...
T Consensus 178 -~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 -SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred -CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24699999999999 8999999887765 999999998753
No 134
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.86 E-value=9.4e-07 Score=98.95 Aligned_cols=184 Identities=22% Similarity=0.323 Sum_probs=128.5
Q ss_pred HHhHhhhhhHHHHHHHHHH----HHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHH
Q 002879 280 ATVSHEIRTPMNGVLGMLD----MLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 352 (871)
Q Consensus 280 a~iSHElRTPL~~I~g~~~----lL~~~---~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ 352 (871)
++|+-||---|.-.+.++. +|... +..++.++.+..+....+.--.-+.++|.--|+. ...-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRlt-------L~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLT-------LQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccCchHH
Confidence 4566677666666665554 34321 2334456667777666665566666776654432 23346778
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecH---HHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhh
Q 002879 353 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 429 (871)
Q Consensus 353 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~---~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 429 (871)
-++++++.|+. +-++.+.+++. .|... .|+ ..+-||+.-=++||+||+...+|.|+++...
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~---------- 510 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND---------- 510 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC----------
Confidence 88888887765 45666666543 33322 233 3477899999999999999888888875321
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCC
Q 002879 430 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 509 (871)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 509 (871)
..+.+.|+|+|+|||+.. . .
T Consensus 511 -------------------------------------------g~~~~~VeDnG~Gi~~~~-----------e------~ 530 (574)
T COG3850 511 -------------------------------------------GQVTLTVEDNGVGIDEAA-----------E------P 530 (574)
T ss_pred -------------------------------------------CeEEEEEeeCCcCCCCcc-----------C------C
Confidence 247899999999999751 1 1
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 002879 510 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 547 (871)
Q Consensus 510 ~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp 547 (871)
+| --||.|-+.=++.+||.+.+++.+|+||++.++++
T Consensus 531 ~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 531 SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred CC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 23 57899999999999999999999999999999986
No 135
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.83 E-value=4.9e-08 Score=96.85 Aligned_cols=103 Identities=19% Similarity=0.293 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHHhhccCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002879 387 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 462 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (871)
|...++.++..++.||++|... |.|.|++...+
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~------------------------------------------- 75 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYE------------------------------------------- 75 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEEC-------------------------------------------
Confidence 5567889999999999999843 55666654321
Q ss_pred CCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 002879 463 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 542 (871)
Q Consensus 463 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F 542 (871)
..+.|.|+|+|+|++++.....|.||+...+.. ...+.|+||.+++.|++. +.+.+ ..|++|
T Consensus 76 ----------~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v 137 (161)
T PRK04069 76 ----------DRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTV 137 (161)
T ss_pred ----------CEEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEE
Confidence 257899999999999999999999987654322 234679999999999986 66665 468999
Q ss_pred EEEEEeCC
Q 002879 543 TFTAVFGN 550 (871)
Q Consensus 543 ~~~lp~~~ 550 (871)
+++-.+..
T Consensus 138 ~~~k~~~~ 145 (161)
T PRK04069 138 SMTKYINR 145 (161)
T ss_pred EEEEEcCc
Confidence 99876644
No 136
>PRK15029 arginine decarboxylase; Provisional
Probab=98.81 E-value=2.2e-08 Score=120.11 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=85.1
Q ss_pred eEEEEeCCHH--------HHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH----HHHHHHHh
Q 002879 726 KILIVDDNNV--------NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF----EATKIIRE 793 (871)
Q Consensus 726 ~ILvVdDn~~--------n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~----e~~~~IR~ 793 (871)
+||||||+.. .++.++..|+..||+|..+.++.+|++.+.....||+||+|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 69999999999999999999999999998533579999999999999998 89999996
Q ss_pred hhccccccccccccchhhhccCCCCCccEEEEccCCC--HHHHHHHHHcCCCEEEeCCCCHHH
Q 002879 794 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFEAEQ 854 (871)
Q Consensus 794 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~~G~d~yl~KP~~~~~ 854 (871)
. ...+|||++|+... .......++ -+++|+-+--+..+
T Consensus 82 ~----------------------~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 R----------------------QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTAD 121 (755)
T ss_pred h----------------------CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHH
Confidence 2 24699999999886 333222222 25677777655444
No 137
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.79 E-value=3e-06 Score=98.56 Aligned_cols=65 Identities=28% Similarity=0.282 Sum_probs=55.0
Q ss_pred eEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCc-ccccHHHHHHHHHHcCCE--EEEEEeCCCeEEEEEEEEeC
Q 002879 474 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG-TGIGLSISKYLVGRMKGE--IGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 474 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G-tGLGLsI~k~lv~~~gG~--I~v~S~~g~Gs~F~~~lp~~ 549 (871)
.+.++|.|+|+||+++....+.+.- ++ .|+||+=+++.++.+-|. +.++|.+++||...+.+|..
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 5789999999999998877654321 22 599999999999999998 58999999999999999864
No 138
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.72 E-value=4.4e-08 Score=103.73 Aligned_cols=112 Identities=29% Similarity=0.362 Sum_probs=93.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcC-CE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g-~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+|+++||++..+..+..++.... ++ +..+.++.++++.+. ...+|++|+||+||.|+|+++.++||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ-GLRPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh-ccCCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 79999999999999999998422 22 336889999999985 45899999999999999999999999742
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
+..+|+++|++.. ....+++..+-||+.||++.+.|...+.+.
T Consensus 74 --------------~~~~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 74 --------------PRPAIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred --------------CCCeEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 3568999998744 455567888899999999999999999753
No 139
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.68 E-value=2.7e-06 Score=93.84 Aligned_cols=129 Identities=22% Similarity=0.340 Sum_probs=92.4
Q ss_pred EeecHHHHHHHHHHHHHHHHh--hcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccC-----CCCeEEEEEEEe
Q 002879 346 VSFNLRAILDDVLSLFSGKSQ--DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-----EKGHIFVTVYLV 418 (871)
Q Consensus 346 ~~~~l~~ll~~v~~~~~~~a~--~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-----~~G~I~v~v~~~ 418 (871)
..+.|.+-++.+-..++-+-. .-.+++.+++++.+-.. . =|. -+|.=|+.|||||. +.|.|.|+|...
T Consensus 415 ~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~-~-iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~~ 489 (557)
T COG3275 415 EIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV-Q-IPS---FILQPLVENAIKHGISQLKDTGRVTISVEKE 489 (557)
T ss_pred eEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhc-c-Cch---hhhhHHHHHHHHhcccchhcCCceEEEEEEe
Confidence 346788888887766654322 22355555555443211 1 111 35667899999995 347888877543
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccc
Q 002879 419 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 498 (871)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 498 (871)
+ ..+++.|+|+|.||+++
T Consensus 490 d-----------------------------------------------------~~l~i~VeDng~li~p~--------- 507 (557)
T COG3275 490 D-----------------------------------------------------ADLRIEVEDNGGLIQPD--------- 507 (557)
T ss_pred C-----------------------------------------------------CeEEEEEecCCCCcCCC---------
Confidence 2 23789999999999886
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCC---EEEEEEeCCCeEEEEEEEEeCC
Q 002879 499 MQVGPSISRTHGGTGIGLSISKYLVGRMKG---EIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 499 ~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG---~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
...|+|+||+.+++=++++=| -++++|.+..||+++|.+|+..
T Consensus 508 ---------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 ---------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred ---------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 225899999999999988888 7999999999999999999854
No 140
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.61 E-value=1.9e-07 Score=76.62 Aligned_cols=64 Identities=44% Similarity=0.760 Sum_probs=57.4
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002879 275 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 338 (871)
Q Consensus 275 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~ 338 (871)
+.+|++.++|||||||++|.++++.+.+...+++..++++.+..+++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4579999999999999999999999887666666688999999999999999999999999875
No 141
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.58 E-value=6e-07 Score=88.78 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhhccCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCC
Q 002879 388 PGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 463 (871)
Q Consensus 388 ~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (871)
...+.-++..++.||++|+.. |.|.|.+...+
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~-------------------------------------------- 75 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYE-------------------------------------------- 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeC--------------------------------------------
Confidence 445888999999999999743 56666654321
Q ss_pred CCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEE
Q 002879 464 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 543 (871)
Q Consensus 464 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~ 543 (871)
..+.+.|.|+|.|++++.....|.|+...++. ....+.|+||.|+++|++ ++.+.+ +.|++++
T Consensus 76 ---------~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~--~~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~ 138 (159)
T TIGR01924 76 ---------DRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI--DDLREGGLGLFLIETLMD----EVEVYE--DSGVTVA 138 (159)
T ss_pred ---------CEEEEEEEEcccccCchhhccccCCCCCCCCc--ccCCCCccCHHHHHHhcc----EEEEEe--CCCEEEE
Confidence 24789999999999999988888887654332 223467999999999998 677776 4578888
Q ss_pred EEEEeC
Q 002879 544 FTAVFG 549 (871)
Q Consensus 544 ~~lp~~ 549 (871)
++..+.
T Consensus 139 l~k~~~ 144 (159)
T TIGR01924 139 MTKYLN 144 (159)
T ss_pred EEEEEc
Confidence 876553
No 142
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.50 E-value=4.8e-05 Score=80.19 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=123.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEe---ecHHHHHHHHHHHH
Q 002879 285 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS---FNLRAILDDVLSLF 361 (871)
Q Consensus 285 ElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~---~~l~~ll~~v~~~~ 361 (871)
-|..-|-+..-.++++...-.++.+ .-...+.+++.+|..-|+++--+|. .|.+.. .-|..-++-.++.|
T Consensus 261 GIsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~L~~~f 333 (459)
T COG4564 261 GISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEALLEDF 333 (459)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc------ccChhhhhhhhHHHHHHHHHHHh
Confidence 3455566777777877654333222 1225677778888888888866653 122221 22444555555555
Q ss_pred HHHHhhcCCEEEEEeCCCCCceEEe-cHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCC
Q 002879 362 SGKSQDKGVELAVYISDRVPETLIG-DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 440 (871)
Q Consensus 362 ~~~a~~k~i~l~~~~~~~~p~~v~~-D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (871)
+ ...|+++.+..+. .|..+.- -...|.+|...-++|-=+|+..-.|.|...
T Consensus 334 ~---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~------------------------ 385 (459)
T COG4564 334 K---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQ------------------------ 385 (459)
T ss_pred h---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEec------------------------
Confidence 5 6778888887653 3444432 345688899999999989884444444331
Q ss_pred CCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHH
Q 002879 441 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK 520 (871)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k 520 (871)
.....++..|.|+|+|.+.+... ..-.||||--.+
T Consensus 386 -----------------------------~~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMr 420 (459)
T COG4564 386 -----------------------------QMGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMR 420 (459)
T ss_pred -----------------------------cCCcceEEEEecCCCCccchhhc----------------cCccccccccHH
Confidence 11235789999999999865331 112699999999
Q ss_pred HHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 521 YLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 521 ~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
.=+...||+..++|.|. ||..++.+|..
T Consensus 421 ERma~~GG~~~v~s~p~-GTel~v~Lp~~ 448 (459)
T COG4564 421 ERMAHFGGELEVESSPQ-GTELTVLLPLD 448 (459)
T ss_pred HHHHHhCceEEEEecCC-CcEEEEEecch
Confidence 99999999999999997 99999999874
No 143
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.42 E-value=2.8e-05 Score=83.63 Aligned_cols=183 Identities=21% Similarity=0.282 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee------eEeEeecHHHHHHHHHHHHHHHHhhcCC---EEEEEeCCCC
Q 002879 310 QDYVRTAQASGKALVSLINEVLDQAKVESGKLE------LEAVSFNLRAILDDVLSLFSGKSQDKGV---ELAVYISDRV 380 (871)
Q Consensus 310 ~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~------l~~~~~~l~~ll~~v~~~~~~~a~~k~i---~l~~~~~~~~ 380 (871)
+.+++....+-=.+.-|+|+=+-+-- +|+-+ .-....++.++|+++.+..+..+..+=+ ++.+.-+...
T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 174 QYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 44555554443334445665443322 34332 1123478999999999988877776543 2333333333
Q ss_pred CceEEecHHHHHHHHHHHHHHhhccCC-----CCe----EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccC
Q 002879 381 PETLIGDPGRFRQIITNLMGNSIKFTE-----KGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 451 (871)
Q Consensus 381 p~~v~~D~~rl~qIl~NLl~NAiKfT~-----~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (871)
...| .=|.-|.-++.-|+.||+++|= .|. |.|.|...
T Consensus 252 ~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--------------------------------- 297 (414)
T KOG0787|consen 252 SFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--------------------------------- 297 (414)
T ss_pred cCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC---------------------------------
Confidence 2221 3578899999999999999982 233 44444211
Q ss_pred ccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC------CCCCCcccccHHHHHHHHHH
Q 002879 452 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGR 525 (871)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~------~~~~~GtGLGLsI~k~lv~~ 525 (871)
...+.|.|+|.|-||+.+..+++|.=-|...+.. ...-.|.|-||.|||..++.
T Consensus 298 --------------------deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~y 357 (414)
T KOG0787|consen 298 --------------------DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARY 357 (414)
T ss_pred --------------------CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHH
Confidence 1236788999999999999999997544433221 22235999999999999999
Q ss_pred cCCEEEEEEeCCCeEEEEEEEEe
Q 002879 526 MKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 526 ~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
.||++.+.|-.|-||-..+.+-.
T Consensus 358 f~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 358 FGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred hCCCeeEEeeeccccceEEEecc
Confidence 99999999999999999998743
No 144
>PF14501 HATPase_c_5: GHKL domain
Probab=98.39 E-value=4.6e-06 Score=75.69 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHHhhccCC----CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002879 387 DPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 462 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (871)
|+.-|-.+|.||++||++++. +..|.|.++..
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~-------------------------------------------- 37 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREE-------------------------------------------- 37 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--------------------------------------------
Confidence 456688999999999999873 23444444321
Q ss_pred CCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 002879 463 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 542 (871)
Q Consensus 463 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F 542 (871)
...+.|.|+++-.+ + .++++ +++...++.|+||.+++++++.++|.+.++++.+ .|
T Consensus 38 ---------~~~~~i~i~N~~~~---~-~~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f 93 (100)
T PF14501_consen 38 ---------NGFLVIIIENSCEK---E-IEKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IF 93 (100)
T ss_pred ---------CCEEEEEEEECCCC---c-ccccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EE
Confidence 13578889988554 1 12222 2234567899999999999999999999887754 66
Q ss_pred EEEEEe
Q 002879 543 TFTAVF 548 (871)
Q Consensus 543 ~~~lp~ 548 (871)
++++-+
T Consensus 94 ~~~i~i 99 (100)
T PF14501_consen 94 TVKIVI 99 (100)
T ss_pred EEEEEE
Confidence 666543
No 145
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.32 E-value=4.9e-06 Score=105.52 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=98.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccc
Q 002879 721 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 721 ~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 800 (871)
.+.+++|||+||++.++..+..+|...|+.+..+.++.+ + ....||++++|+.||.+++.+..........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-~~~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-PEAHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-ccCCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 356789999999999999999999999999999999888 2 2457999999999999888776655543211
Q ss_pred cccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
....++|+++..........+.+.|+++|+.||+...+|...+....
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 12356888899899999999999999999999999999999987654
No 146
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.18 E-value=7.5e-06 Score=66.41 Aligned_cols=62 Identities=40% Similarity=0.723 Sum_probs=53.3
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 274 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAK 335 (871)
Q Consensus 274 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~L~~lIndlLd~sk 335 (871)
.+.++.+.++|||||||+++.++++.+.+... .+...++++.+..++.++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999999998876433 456678899999999999999999998874
No 147
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.16 E-value=1.8e-06 Score=96.89 Aligned_cols=91 Identities=26% Similarity=0.442 Sum_probs=80.4
Q ss_pred CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccC
Q 002879 749 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 828 (871)
Q Consensus 749 ~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~ 828 (871)
++|..+..|.+|+..+. .+.+|+++.|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~-~~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILL-DHKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHh-cCCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 45667999999999884 68999999999999999999999999742 238999999
Q ss_pred CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 829 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 829 ~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.....+.+++|++++++||++...+...+..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~ 103 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVR 103 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhcc
Confidence 999999999999999999999999999888776543
No 148
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.06 E-value=2.8e-05 Score=79.83 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=72.5
Q ss_pred EeecCCCceEEeeccCCChhchHHHHHHHhcCCceeeccccccccCCceEEEEEeeecCCCCCCCChhHHHHhhcceeee
Q 002879 69 IFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 148 (871)
Q Consensus 69 ~~~~~~~~~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~ 148 (871)
.||.+.|..++|+|+..+|.-+.++.|||+.++.++|+|+.|+| ++-|++..+|++-.. +. -+.++|+|.+
T Consensus 119 ~yPl~~neaa~gLDYrk~pqQ~~s~~~A~~~k~tvvsGpVDL~Q-GgRgfi~rvPlf~gp--~~------~dRFwGvVs~ 189 (297)
T COG3452 119 VYPLPGNEAAIGLDYRKNPQQRQSTSRARRQKETVVSGPVDLVQ-GGRGFIGRVPLFMGP--PG------GDRFWGVVSG 189 (297)
T ss_pred EeecCCChhhcCcchhcCHHHHHHHHHHHhhcceEEecceeecc-CCceEEEEEeeeeCC--CC------CCccceEEEE
Confidence 78999999999999999999999999999999999999999997 566999999998642 11 2457899999
Q ss_pred ecchHHHHHHH
Q 002879 149 IFDIESLVEKL 159 (871)
Q Consensus 149 ~~~v~~l~~~~ 159 (871)
+||++.|.+..
T Consensus 190 V~dvDqL~~s~ 200 (297)
T COG3452 190 VFDVDQLYESV 200 (297)
T ss_pred EEEHHHHHHHh
Confidence 99999998875
No 149
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=3e-05 Score=85.52 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCC
Q 002879 389 GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 468 (871)
Q Consensus 389 ~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (871)
..+.+++.|||.||+++.. ..|.|.+.. .
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~------------------------------------------------ 49 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--G------------------------------------------------ 49 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--C------------------------------------------------
Confidence 3578999999999999864 456555421 0
Q ss_pred CCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC------CCCCCcccccHHHHHHHHHHcCCEEEEEEeC--CCeE
Q 002879 469 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIP--NIGS 540 (871)
Q Consensus 469 ~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~------~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~--g~Gs 540 (871)
....|.|.|+|.||++++++++|++|++.+... ...+|--|.||+-...+ +.+.+.|.. +.+.
T Consensus 50 ----~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~ 120 (312)
T TIGR00585 50 ----GLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGL 120 (312)
T ss_pred ----CEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcc
Confidence 123599999999999999999999999765432 12345568888644333 378999875 4444
Q ss_pred EEEEE
Q 002879 541 TFTFT 545 (871)
Q Consensus 541 ~F~~~ 545 (871)
.+.+.
T Consensus 121 ~~~~~ 125 (312)
T TIGR00585 121 AWQAL 125 (312)
T ss_pred eEEEE
Confidence 44443
No 150
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.76 E-value=0.00023 Score=67.20 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHHHhhccCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002879 387 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 462 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (871)
+...+.-++.-++.||++|+.. +.|.|.+...
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~-------------------------------------------- 63 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVD-------------------------------------------- 63 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--------------------------------------------
Confidence 4457889999999999999865 3455544321
Q ss_pred CCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 002879 463 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 542 (871)
Q Consensus 463 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F 542 (871)
...+.|.|.|+|.|+++.....-...= .......|+||.|++++++.+ .+ + .+.|++.
T Consensus 64 ---------~~~l~i~v~D~G~~~d~~~~~~~~~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v 121 (125)
T PF13581_consen 64 ---------PDRLRISVRDNGPGFDPEQLPQPDPWE-------PDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTV 121 (125)
T ss_pred ---------CCEEEEEEEECCCCCChhhccCccccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEE
Confidence 125889999999999887554322110 023356799999999999875 55 4 7889998
Q ss_pred EEE
Q 002879 543 TFT 545 (871)
Q Consensus 543 ~~~ 545 (871)
+++
T Consensus 122 ~l~ 124 (125)
T PF13581_consen 122 TLR 124 (125)
T ss_pred EEE
Confidence 874
No 151
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00014 Score=80.16 Aligned_cols=111 Identities=22% Similarity=0.333 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHHHhhccCCCCe----EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002879 387 DPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 462 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (871)
-..-|-|++.-|+.||+.+|+.-+ |.|.+...
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-------------------------------------------- 68 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-------------------------------------------- 68 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec--------------------------------------------
Confidence 345699999999999999997644 44443221
Q ss_pred CCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCC-CC-CCCCcccccHHHHHHHHHHcCCE-EEEEEeCCC-
Q 002879 463 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS-IS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPNI- 538 (871)
Q Consensus 463 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s-~~-~~~~GtGLGLsI~k~lv~~~gG~-I~v~S~~g~- 538 (871)
+..++.+.|+|||+|||+++..++|-.+.-.+.- .. ...|--|||.+-|=-..++.-|+ +.|.|..+.
T Consensus 69 --------~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s 140 (538)
T COG1389 69 --------GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDS 140 (538)
T ss_pred --------CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCC
Confidence 1235789999999999999999999776533221 11 12355799999999999999887 777776654
Q ss_pred eEEEEEEEEeC
Q 002879 539 GSTFTFTAVFG 549 (871)
Q Consensus 539 Gs~F~~~lp~~ 549 (871)
++...+.+-..
T Consensus 141 ~~~~~~~l~id 151 (538)
T COG1389 141 GTAYEYELKID 151 (538)
T ss_pred cceEEEEEEec
Confidence 77666666543
No 152
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.94 E-value=0.0045 Score=46.21 Aligned_cols=54 Identities=37% Similarity=0.479 Sum_probs=48.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 780 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP 780 (871)
++++++|++..+..+...+...|+.+..+.++.++...+. .+.+|++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6999999999999999999999999999999999988774 45799999998765
No 153
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.86 E-value=0.0094 Score=57.89 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHHHhhccCCC-----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002879 387 DPGRFRQIITNLMGNSIKFTEK-----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 461 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT~~-----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (871)
|..+++-++.-++.||++|..+ |.|.|.+...+
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~------------------------------------------ 74 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD------------------------------------------ 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC------------------------------------------
Confidence 7789999999999999999865 77777765422
Q ss_pred CCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCe
Q 002879 462 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 539 (871)
Q Consensus 462 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~G 539 (871)
..+.+.|.|.|+||.+ .++.+.|-+.. ...-..-|+||.+.++++. ++.+++.++.+
T Consensus 75 -----------~~~~i~i~D~G~~~~~--~~~~~~~~~~~----~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 75 -----------GKLEIRIWDQGPGIED--LEESLGPGDTT----AEGLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred -----------CeEEEEEEeCCCCCCC--HHHhcCCCCCC----CcccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 2478999999988754 44455554221 1111233889999888774 67888665553
No 154
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.85 E-value=0.0052 Score=73.98 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002879 390 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 469 (871)
Q Consensus 390 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (871)
++..++..||.||+.+. ...|.|.+.-
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~~---------------------------------------------------- 48 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIEE---------------------------------------------------- 48 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEEe----------------------------------------------------
Confidence 57789999999999975 4466665521
Q ss_pred CCceeEEEEEEecCCCCChhhHhhhcccccccCCCCC------CCCCcccccHHHHHHHHHHcCCEEEEEEeC
Q 002879 470 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIP 536 (871)
Q Consensus 470 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~------~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~ 536 (871)
.....|+|.|+|.||++++++.+|.++...+-+.- ...|=-|.||+-...+ +++.+.|..
T Consensus 49 --~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 49 --GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred --CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 01246999999999999999999999876433211 2334456777644443 367777765
No 155
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.60 E-value=0.017 Score=53.21 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=74.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEE-EEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC-FMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dli-lmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
||||||||..-+.-+..+|.=.|..+..+.+.+-..... ...++.+ ++...++ ...+.++.+-+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~--~~~~~~~~v~~g~~~--~~~~~l~~l~~~---------- 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADW--SSPWEACAVILGSCS--KLAELLKELLKW---------- 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhh--hcCCcEEEEEecCch--hHHHHHHHHHhh----------
Confidence 699999999999999999999999999888765422222 2345555 4444443 334444555432
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
.+++|++.+.......... .+-+-|..|++..+|.+.+++.
T Consensus 67 ------------~~~~Pvlllg~~~~~~~~~-----nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 67 ------------APHIPVLLLGEHDSPEELP-----NVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ------------CCCCCEEEECCCCcccccc-----CeeEecCCCCCHHHHHHHHHHh
Confidence 4689999998776651111 1567799999999999999874
No 156
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=96.35 E-value=0.028 Score=51.17 Aligned_cols=110 Identities=15% Similarity=0.267 Sum_probs=78.8
Q ss_pred EEEeCCchhhhHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 579 ALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 579 ~l~vd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
++++|+++..+......++..|+ .+..+++..+++..+.... ++++++|...... ....++..+++.. ....
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~---~~~~~~~~i~~~~--~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDG---DGLELLEQIRQIN--PSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSS---BHHHHHHHHHHHT--TTSE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccc---ccccccccccccc--cccc
Confidence 58899999999999999999999 9999999999999886544 8899988665442 2234556666554 3455
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHH
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 696 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l 696 (871)
++++............. ..+...++.||+....+.+.+
T Consensus 74 ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 74 IIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHhh
Confidence 55555433322222222 336778999999999887765
No 157
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=96.20 E-value=0.0044 Score=59.69 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=42.4
Q ss_pred EEEEEecCCCCChhhHhhhcccccccCCC--CCCCCCccccc--HHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEE
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIG--LSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 547 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s--~~~~~~GtGLG--LsI~k~lv~~~gG~I~v~S~~g-~Gs~F~~~lp 547 (871)
.|.|.|+|.||+.+.+.++|......... .....|-.|+| +|+. .++..+.|.|... ...+++|...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 58999999999999999977655433221 12345667888 4433 4688899999864 3445555554
No 158
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.11 E-value=0.059 Score=56.66 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=84.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC-
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 655 (871)
+++++||+++........+|+..|++|..+.+..+++...... ++.+++|..+...+ ...++..++.. ....
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~d---G~~~~~~iR~~-~~~~~ 73 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLD---GLELCRRLRAK-KGSGP 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCC---HHHHHHHHHhh-cCCCC
Confidence 4789999999999999999999999999999999999887765 88999887654332 33456667755 3333
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 703 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~ 703 (871)
|.+++.+.+..... -..-..|...++.||+....+.+-++..+...
T Consensus 74 PIi~Lta~~~~~d~--v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 74 PIIVLTARDDEEDR--VLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred cEEEEECCCcHHHH--HHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 44444433211111 11122356789999999999999888877543
No 159
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.87 E-value=0.016 Score=69.65 Aligned_cols=96 Identities=30% Similarity=0.479 Sum_probs=63.5
Q ss_pred CceEEe--cHHHHHHHHHHHHHHhhccCCCC---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccc
Q 002879 381 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 455 (871)
Q Consensus 381 p~~v~~--D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (871)
|.+.+| +...+.+++.-||.||+.....| .|.|.++.
T Consensus 26 P~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~-------------------------------------- 67 (631)
T PRK05559 26 PGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA-------------------------------------- 67 (631)
T ss_pred CCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeC--------------------------------------
Confidence 444443 67789999999999999975444 45555421
Q ss_pred ccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhh--------hcccccccC---CCCCCCCCc-ccccHHHHHHHH
Q 002879 456 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHGG-TGIGLSISKYLV 523 (871)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv 523 (871)
+ -.|+|.|+|.|||.+..+. +|....... ....+..+| .|.||+.+..+.
T Consensus 68 ---------------d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS 129 (631)
T PRK05559 68 ---------------D---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALS 129 (631)
T ss_pred ---------------C---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhhe
Confidence 0 1489999999999998888 887743221 111112233 799999988876
Q ss_pred HHcCCEEEEEEeC
Q 002879 524 GRMKGEIGFVSIP 536 (871)
Q Consensus 524 ~~~gG~I~v~S~~ 536 (871)
+. +.+++..
T Consensus 130 ~~----l~V~s~r 138 (631)
T PRK05559 130 SR----LEVEVKR 138 (631)
T ss_pred ee----EEEEEEe
Confidence 54 4555543
No 160
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=94.85 E-value=0.054 Score=65.27 Aligned_cols=88 Identities=28% Similarity=0.455 Sum_probs=55.6
Q ss_pred CceEEe--cHHHHHHHHHHHHHHhhccCCCC---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccc
Q 002879 381 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 455 (871)
Q Consensus 381 p~~v~~--D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (871)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.++-
T Consensus 26 PgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~-------------------------------------- 67 (638)
T PRK05644 26 PGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE-------------------------------------- 67 (638)
T ss_pred CCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC--------------------------------------
Confidence 444554 66789999999999999844344 56555531
Q ss_pred ccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHh--------hhccccccc---CCCCCC-CCCcccccHHHHHHHH
Q 002879 456 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISR-THGGTGIGLSISKYLV 523 (871)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~~~-~~~GtGLGLsI~k~lv 523 (871)
+. .|+|.|+|.|||.+..+ -||.-.... +....+ ..|--|.||+.+..+.
T Consensus 68 ---------------~g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS 129 (638)
T PRK05644 68 ---------------DG---SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALS 129 (638)
T ss_pred ---------------CC---cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhhee
Confidence 00 48999999999997433 244333111 111122 2334799999888877
Q ss_pred H
Q 002879 524 G 524 (871)
Q Consensus 524 ~ 524 (871)
+
T Consensus 130 ~ 130 (638)
T PRK05644 130 T 130 (638)
T ss_pred c
Confidence 6
No 161
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=94.71 E-value=0.22 Score=57.21 Aligned_cols=178 Identities=13% Similarity=0.168 Sum_probs=111.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.++|+|||++.-+.+....|...|+.|..+.+..+++..+... .+++++.|..+. +.+. ..++..+++.. ..-|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp--~~~G-l~ll~~i~~~~-~~~p 78 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMP--GMDG-LELLKEIKSRD-PDLP 78 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCC--CCch-HHHHHHHHhhC-CCCC
Confidence 4699999999999999999999999999999999999998877 588888876544 3332 23455555543 2224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCC----------CCC-CC-cchh------
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR----------NWE-LP-SMSL------ 718 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~----------~~~-~~-~~~~------ 718 (871)
.+++...+.-....+..+. |...++.||+....+...+.+++......... ... .. +...
T Consensus 79 VI~~Tg~g~i~~AV~A~k~--GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~ 156 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRL--GAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRL 156 (464)
T ss_pred EEEEeCCCCHHHHHHHHhc--CcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHH
Confidence 4433332221111111122 45678999999999999999988642211000 000 00 0000
Q ss_pred --hhcCCCCeEEEEeCCHHHHHHHHHHHHHcCC-------EEEEEcCHHHHHH
Q 002879 719 --RHLLLGRKILIVDDNNVNLKVAAAGLKRYGA-------AVVCVERGKKATE 762 (871)
Q Consensus 719 --~~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~-------~v~~a~~g~eAl~ 762 (871)
+-..+.-.|||.-..-.=.+++...+.+.+- .+-|+.=..+-++
T Consensus 157 i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~E 209 (464)
T COG2204 157 IAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLE 209 (464)
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHH
Confidence 0112345688888888888888888876542 3445555555544
No 162
>PRK14083 HSP90 family protein; Provisional
Probab=94.59 E-value=0.022 Score=67.77 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=34.3
Q ss_pred EEEEEecCCCCChhhHhhhcccccccC-------CCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVG-------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 536 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~-------~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~ 536 (871)
.|+|+|||+||+.+...+.|--..... .......|..|+|..=|-. .+-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~----vad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL----VADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE----ecCEEEEEecc
Confidence 589999999999999888763222100 0111234678888765433 23445555544
No 163
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=94.59 E-value=0.042 Score=65.99 Aligned_cols=51 Identities=27% Similarity=0.450 Sum_probs=33.9
Q ss_pred EEEEEecCCCCChhh--------Hhhhc-cccccc--CCCCCCCCCc-ccccHHHHHHHHHHc
Q 002879 476 IVSVEDTGQGIPLEA--------QSRIF-TPFMQV--GPSISRTHGG-TGIGLSISKYLVGRM 526 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~--------~~~iF-~pF~q~--~~s~~~~~~G-tGLGLsI~k~lv~~~ 526 (871)
.|+|.|+|.|||.+. .+-+| .+.... +....+..+| .|.||+.+..+.+.+
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKRV 125 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCeE
Confidence 489999999999988 77777 332211 1111122233 799999999888743
No 164
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.50 E-value=0.94 Score=42.54 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=75.2
Q ss_pred EEEE----eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhhcc
Q 002879 727 ILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHN 797 (871)
Q Consensus 727 ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~~~ 797 (871)
|++. |.+..=...+..+|+..||+|.... ..++.++.+. ...+|+|.+-..|+..-. -++++++|+.
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~--- 77 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLREL--- 77 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhc---
Confidence 4555 6677777888999999999998744 3566666664 568999999887753322 2233334431
Q ss_pred ccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Q 002879 798 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 860 (871)
Q Consensus 798 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~ 860 (871)
....++ +++-+....+..++..++|+|+|+..=-+.++...-++
T Consensus 78 ------------------~~~~i~-i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 78 ------------------GAGDIL-VVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ------------------CCCCCE-EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 012344 44555556777888999999999998888877765543
No 165
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.30 E-value=0.42 Score=60.85 Aligned_cols=121 Identities=15% Similarity=0.147 Sum_probs=82.6
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC-
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG- 653 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 653 (871)
.++++|++|+++..+......|+.+|+++..+.+..+++..+.. ..++++++|..+...+. ......++.....
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G---~~~~~~ir~~~~~~ 763 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDG---LETTQLWRDDPNNL 763 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhchhhc
Confidence 45789999999999999999999999999999999999988754 45788999876654332 2344445443211
Q ss_pred -CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 -FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 -~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
....++++........... ....+...++.||+....+...+.....
T Consensus 764 ~~~~pii~lt~~~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 764 DPDCMIVALTANAAPEEIHR-CKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCCcEEEEeCCCCHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 2223333332222211111 1223677899999999999998887653
No 166
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.05 E-value=1.9 Score=41.41 Aligned_cols=118 Identities=10% Similarity=0.100 Sum_probs=85.0
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHhh
Q 002879 724 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREM 794 (871)
Q Consensus 724 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~md--G~e~~~~IR~~ 794 (871)
+++||+. |.+..-..++..+|+..||+|+... ..++.++.+. ...+|+|.+-..|.... --++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4688888 9999999999999999999999754 3456666664 57899999998887432 23344444432
Q ss_pred hccccccccccccchhhhccCCCCCccEEEEccCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 795 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 795 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~------~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
. ...++|++ -+.. ..++..++.+.|++.+....-+.++....++++++
T Consensus 82 ~---------------------~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 G---------------------LGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred C---------------------CCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1 12455443 3322 34566789999999999999999999998888764
No 167
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.04 E-value=0.088 Score=63.93 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=23.9
Q ss_pred CceEEe--cHHHHHHHHHHHHHHhhccCCCC---eEEEEE
Q 002879 381 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTV 415 (871)
Q Consensus 381 p~~v~~--D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v 415 (871)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 19 P~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 19 PGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 444444 56779999999999999833233 555554
No 168
>PLN03029 type-a response regulator protein; Provisional
Probab=93.70 E-value=0.51 Score=49.32 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=76.9
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCC------------------CcceEEEeeccccccC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS------------------KIINMILVEQEVWEKD 636 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~~~~ 636 (871)
...++|+||+++..+......|+.+|+.+..+.+..+++..+.... ..++++++|..+...+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3578999999999999999999999999999999999988764321 2467888887654432
Q ss_pred cchhHHHHHHhhhcCCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHH
Q 002879 637 TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 698 (871)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 698 (871)
. ..++..++.........++++............ ...+...++.||+....+......
T Consensus 87 G---~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~a-l~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 87 G---YDLLKKIKESSSLRNIPVVIMSSENVPSRITRC-LEEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred H---HHHHHHHHhccccCCCcEEEEeCCCCHHHHHHH-HHhCchheEECCCCHHHHHHHHHH
Confidence 2 334455554332222233333322221111111 123567899999998887655443
No 169
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=93.58 E-value=0.76 Score=57.48 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=84.4
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+.+++++|+++..+.+....|+.+|+.+..+++..+++..+.. ..++++++|..+...+ .......++......
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~---G~e~~~~ir~~~~~~ 598 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMT---GLDIARELRERYPRE 598 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhccccC
Confidence 45789999999999999999999999999999999999988763 4578999987654432 223445555443212
Q ss_pred C-ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 655 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 655 ~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
. +.++++....... ... ....+...++.||+....+..++.+.+..
T Consensus 599 ~~~~ii~~ta~~~~~-~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 599 DLPPLVALTANVLKD-KKE-YLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred CCCcEEEEECCchHh-HHH-HHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 2 2344433322211 111 12336778999999999999999988753
No 170
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=93.09 E-value=0.54 Score=60.24 Aligned_cols=121 Identities=14% Similarity=0.238 Sum_probs=84.6
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+.+++++|+++..+.+....|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++......
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~---g~~~~~~ir~~~~~~ 775 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGD---GVTLLQQLRAIYGAK 775 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCC---HHHHHHHHHhCcccc
Confidence 34589999999999999999999999999999999999998865 5689999987654433 233445555533222
Q ss_pred C-ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
. ..++++.......... .....++..++.||+....+...+.+.+.
T Consensus 776 ~~~pii~lta~~~~~~~~-~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 776 NEVKFIAFSAHVFNEDVA-QYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCCeEEEEECCCCHHHHH-HHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 2 3333333322221111 11223677899999999999999988774
No 171
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=92.90 E-value=0.073 Score=64.33 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.7
Q ss_pred EEEEEecCCCCChhhHhhhc
Q 002879 476 IVSVEDTGQGIPLEAQSRIF 495 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF 495 (871)
.+.|.|||+||+++++.+-|
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 58999999999998866544
No 172
>PRK05218 heat shock protein 90; Provisional
Probab=92.69 E-value=0.36 Score=58.11 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=37.7
Q ss_pred EEEEEecCCCCChhhHhhhcccccccC------------CCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVG------------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 536 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~------------~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~ 536 (871)
.|.|+|||+||+.+++..-|...-..+ .+.....|-.|+|+.= +=+.+-++.|.|..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S----~f~va~~v~V~Sr~ 142 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS----AFMVADKVTVITRS 142 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh----hhhccCEEEEEEcC
Confidence 489999999999999988764433211 0112234668899852 23345688998876
No 173
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=92.52 E-value=1.7 Score=40.31 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHH-HHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL-QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
.+.+++++|+++..+......|+.+|..+..+.+.. +++..+.... .++.+++|..+...+ ...+...+++. ..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~---G~~~~~~l~~~-~~ 78 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMD---GIELLRRLRAR-GP 78 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCC---HHHHHHHHHhC-CC
Confidence 467899999999999999999999999999999995 8888876543 467788887766333 33445555554 12
Q ss_pred CCceEEEEeccCCccc-cCcCCCCCCCCceeecCCchHH-HHHHHHHHh
Q 002879 654 FQSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLRSSM-LAASLQRAM 700 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~~~~~-l~~~l~~~~ 700 (871)
..| + ++.++..... .... ...+...++.||+.... +...+.+.+
T Consensus 79 ~~p-v-v~~t~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 79 NIP-V-ILLTAYADEADRERA-LAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred CCC-E-EEEEcCcCHHHHHHH-HHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 224 3 3333322221 1111 11245568999976655 555555433
No 174
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=92.50 E-value=0.61 Score=43.37 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhhccccccccccccchhhhccC
Q 002879 738 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 815 (871)
Q Consensus 738 ~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 815 (871)
..+...|++.|++|+.+.+..+|+..+.....++.|++|.. ++ ....++++.||+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--------------------- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER--------------------- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh---------------------
Confidence 45677888899999999999999999976678899999986 11 1235677777764
Q ss_pred CCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHH
Q 002879 816 SNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 855 (871)
Q Consensus 816 ~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L 855 (871)
+..+||.+++.....+..-...-.-.++|+-..-+-.++
T Consensus 65 -~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 65 -NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp -STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred -CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 457999999987666665556666788999887655443
No 175
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=92.14 E-value=0.88 Score=57.92 Aligned_cols=119 Identities=20% Similarity=0.302 Sum_probs=83.1
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 574 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 574 ~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+.+++++|+++..+.+....|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ .......+++...
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~md---G~el~~~ir~~~~- 872 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMD---GYRLTQRLRQLGL- 872 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCC---HHHHHHHHHhcCC-
Confidence 367899999999999999999999999999999999999988765 3588899988765443 2234445554322
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
...++++......... ......+...++.||+....+...+.+..
T Consensus 873 -~~pII~lTa~~~~~~~-~~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 873 -TLPVIGVTANALAEEK-QRCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred -CCCEEEEECCCCHHHH-HHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 2223333322221111 11122367789999999999998887654
No 176
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.92 E-value=2 Score=39.93 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=63.7
Q ss_pred eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhhcccccccccc
Q 002879 731 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 731 dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~g 805 (871)
|.+..-..++..+|+..|++|.... ..++.++.+. ...||+|.+-..|... +..++.+.+|+.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~----------- 77 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEA----------- 77 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHc-----------
Confidence 6667778899999999999997633 3455566663 5689999998875543 334455555542
Q ss_pred ccchhhhccCCCC-CccEEEEccCCCHHHHHHHHHcCCCEEEeCC
Q 002879 806 EVSIEAYENVSNF-HVPILAMTADVIQATYEECLRSGMDGYVSKP 849 (871)
Q Consensus 806 ~~~~~~~~~~~~~-~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP 849 (871)
.+ .++ |++-+.......+.+.+.|+|.|+...
T Consensus 78 -----------~~~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 78 -----------GLDDIP-VLVGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred -----------CCCCCe-EEEECCCCChhHHHHHHcCCeEEECCH
Confidence 12 344 445555555555678899998887643
No 177
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.54 E-value=0.48 Score=44.75 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEEEee
Q 002879 391 FRQIITNLMGNSIKFTEKGHIFVTVYLVE 419 (871)
Q Consensus 391 l~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 419 (871)
+.-+...|+.||+||...|.|.|..++..
T Consensus 64 vgYl~NELiENAVKfra~geIvieasl~s 92 (184)
T COG5381 64 VGYLANELIENAVKFRATGEIVIEASLYS 92 (184)
T ss_pred HHHHHHHHHHhhhcccCCCcEEEEEEecc
Confidence 34566789999999999999999887643
No 178
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=91.28 E-value=14 Score=41.45 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=63.2
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|++...+......|..+ |+.+. .+.+..+++..+.. ..++.+++|..+...+. ..++..+++...
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dg---le~l~~i~~~~~- 76 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDG---LDALEKIMRLRP- 76 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCCh---HHHHHHHHHhCC-
Confidence 358999999999999888899876 88876 78899888877654 34678888766544322 234444444332
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 688 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~ 688 (871)
.+.+++..............-..+...++.||+.
T Consensus 77 -~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 -TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred -CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 2333322111111010001112255678999984
No 179
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=91.17 E-value=1.1 Score=57.03 Aligned_cols=120 Identities=17% Similarity=0.266 Sum_probs=81.8
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+.+++++|+++..+.+....|+.+|+.+..+.+..+++..+.. ...++++++|..+...++ ......++... .
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G---~~~~~~lr~~~-~- 753 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDG---ITLARQLAQQY-P- 753 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCH---HHHHHHHHhhC-C-
Confidence 46789999999999999999999999999999999999987753 245799999877654432 23344454421 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..+++++.......... .....+...++.||+....+...+.+.+.
T Consensus 754 ~~~ii~~t~~~~~~~~~-~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 754 SLVLIGFSAHVIDETLR-QRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCCEEEEeCCCchhhHH-HHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 22333333222211111 11122556789999999999999988774
No 180
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=91.07 E-value=1.6 Score=39.99 Aligned_cols=116 Identities=17% Similarity=0.305 Sum_probs=82.4
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH--HHHHhhhccc
Q 002879 721 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT--KIIREMEHNF 798 (871)
Q Consensus 721 ~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~--~~IR~~~~~~ 798 (871)
.+.|++++.||-|..-.......|...|.+|+.-..-. .+ +.+.||++++.+-.+--.-..+- +..|..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al---- 78 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----AL-PPAHYDMMLLGVAVTFRENLTMQHERLAKAL---- 78 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----cc-ChhhhceeeecccccccCCchHHHHHHHHHH----
Confidence 46789999999999999999999999999998754433 23 45679999999876654433222 111211
Q ss_pred cccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHhhhC
Q 002879 799 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR-EVSRFF 863 (871)
Q Consensus 799 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~-~l~~~~ 863 (871)
+..+--|+++-... ....++..+-|+-++|.||++...|.. .+..+-
T Consensus 79 -----------------~mtd~vilalPs~~-qv~AeqLkQ~g~~~CllKPls~~rLlptllae~~ 126 (140)
T COG4999 79 -----------------SMTDFVILALPSHA-QVNAEQLKQDGAGACLLKPLSSTRLLPTLLAEFC 126 (140)
T ss_pred -----------------hhhcceEEecCcHH-HHhHHHHhhcchHhHhhCcchhhhhHHHHHHHhh
Confidence 11234577776543 445677888999999999999999988 555554
No 181
>PTZ00130 heat shock protein 90; Provisional
Probab=90.86 E-value=0.28 Score=59.69 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=29.1
Q ss_pred EEEEEecCCCCChhhHhhhccc--------ccc---cCCCCCCCCCcccccHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTP--------FMQ---VGPSISRTHGGTGIGLSISKYLV 523 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~p--------F~q---~~~s~~~~~~GtGLGLsI~k~lv 523 (871)
.|+|+|||+||+.+++..-+-. |.+ .......-.|-.|+|++=|-.++
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 194 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 194 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeec
Confidence 5899999999999986543311 211 00111234567899998764433
No 182
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=90.40 E-value=9.3 Score=42.57 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=68.2
Q ss_pred cEEEEeCCchhhhHHHHHHH-HHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHI-QRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l-~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
+++|++|+++..+......| +..|+.+. .+.+..+++..+.. ..++.+++|..+...+. ..++..++... .
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G---~e~l~~l~~~~--~ 73 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDG---VEATRRIMAER--P 73 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCH---HHHHHHHHHHC--C
Confidence 36899999999988888888 57788875 68899999888754 45788888866543322 22344444321 1
Q ss_pred CceEEEEeccCCccc-cCcCCCCCCCCceeecCC---------chHHHHHHHHHHh
Q 002879 655 QSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPL---------RSSMLAASLQRAM 700 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~---------~~~~l~~~l~~~~ 700 (871)
.+. +++........ .....-..+...++.||. ....+...+....
T Consensus 74 ~pv-ivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 74 CPI-LIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred CcE-EEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 233 33332221111 100111235567999999 3445555555444
No 183
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=90.04 E-value=4.1 Score=51.42 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=79.9
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
++.+++++|+++.........|..+|+.+..+.+..+++..+......+++++++ .. ..+ .......++... .
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll~--~~--~~~-g~~l~~~l~~~~--~ 768 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLVD--DR--LLD-EEQAAAALHAAA--P 768 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEEC--CC--CCC-HHHHHHHHHhhC--C
Confidence 5678999999999999999999999999999999999999887665567888872 11 111 122334444321 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
...++++............ ...+ ..++.||+....+...+...+..
T Consensus 769 ~ipIIvls~~~~~~~~~~~-~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 769 TLPIILGGNSKTMALSPDL-LASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred CCCEEEEeCCCchhhhhhH-hhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 2233333332222221111 1224 77999999999999999888753
No 184
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=89.98 E-value=3.3 Score=42.29 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=77.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|...|+.+..+.+..+++..+.. ..++.+++|......+ .......++........
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~---g~~~~~~l~~~~~~~~~ 77 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTS---GIELCRRLRRRPETRAI 77 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCc---HHHHHHHHHccccCCCC
Confidence 578999999999988888999999999999999888877654 3468888886554322 22344455443222223
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+++++........... .-..+...++.||.....+...+...+.
T Consensus 78 ~ii~ls~~~~~~~~~~-~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 78 PIIMLTARGEEEDRVR-GLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred CEEEEecCCCHHHHHH-HHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 3333332222111111 1123566799999999999888887764
No 185
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=89.70 E-value=3.5 Score=42.54 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=77.3
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++.........|...|+.+..+.+..+++..+.. ..++++++|......+ ....+..+++.......
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGS---GIQFIKHLKRESMTRDI 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhccccCCC
Confidence 578999999999988889999999999999999988887653 3468888886554322 22344455543222223
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++............ -..+...++.||+....+...+...+.
T Consensus 78 pvi~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 78 PVVMLTARGEEEDRVRG-LETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CEEEEECCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 33334332221111111 123566899999999999888877664
No 186
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=89.50 E-value=0.39 Score=57.65 Aligned_cols=48 Identities=35% Similarity=0.542 Sum_probs=28.5
Q ss_pred EEEEEecCCCCChhhHh--------hhccccccc---CCCCCC-CCCcccccHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISR-THGGTGIGLSISKYLV 523 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~~~-~~~GtGLGLsI~k~lv 523 (871)
.|+|.|+|.|||.+..+ -||...... +....+ ..|--|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976533 234333111 111111 2233799999888774
No 187
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=88.65 E-value=2.4 Score=49.44 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=93.2
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceE
Q 002879 579 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 658 (871)
Q Consensus 579 ~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (871)
++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|..+...+ ...++..++... ....+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~---g~~ll~~l~~~~--~~~~v 73 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGED---GLDLLPQIKKRH--PQLPV 73 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHHhC--CCCeE
Confidence 4789999998888889999999999999999999887654 3578888886654432 223344444421 12333
Q ss_pred EEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHH
Q 002879 659 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 738 (871)
Q Consensus 659 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~ 738 (871)
+++............ ...+...++.||+....+...+...+.......... ......+....++.+++.++.
T Consensus 74 Ivlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~~-------~~~~~~~~~~~lig~s~~~~~ 145 (463)
T TIGR01818 74 IVMTAHSDLDTAVAA-YQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVALP-------ADAGEAEDSAELIGEAPAMQE 145 (463)
T ss_pred EEEeCCCCHHHHHHH-HHcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhhh-------hhhhccccccceeecCHHHHH
Confidence 343322221111111 122566789999999999888877654211100000 000001123458889998888
Q ss_pred HHHHHHHHcC
Q 002879 739 VAAAGLKRYG 748 (871)
Q Consensus 739 ~l~~~L~~~g 748 (871)
++..+.+..+
T Consensus 146 v~~~i~~~a~ 155 (463)
T TIGR01818 146 VFRAIGRLSR 155 (463)
T ss_pred HHHHHHHHhC
Confidence 8877766443
No 188
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=88.33 E-value=2 Score=52.24 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=67.2
Q ss_pred eEEEEeCCH-HH-----HHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccc
Q 002879 726 KILIVDDNN-VN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 799 (871)
Q Consensus 726 ~ILvVdDn~-~n-----~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 799 (871)
+|+|||++- .+ .+.+...|++.|++|..+.+..+++.........++|++|.+-. ..++++.||+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 73 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQL----- 73 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHh-----
Confidence 577776663 33 46677788899999999999999999887666789999995332 34577888863
Q ss_pred ccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 800 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 800 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
+..+||+++.............-.-.++|+-.
T Consensus 74 -----------------~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (713)
T PRK15399 74 -----------------NEYLPLYAFINTHSTMDVSVQDMRMALWFFEY 105 (713)
T ss_pred -----------------CCCCCEEEEcCccccccCChhHhhhcceeeee
Confidence 34799999887544333222222334555553
No 189
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=88.21 E-value=4.6 Score=41.57 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=75.8
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
+++++|+++.........|...|+.+..+.+..+++..+.. .++.+++|......+ .......++.... ..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~---g~~~~~~l~~~~~---~~ 73 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKN---GIDTLKELRQTHQ---TP 73 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCc---HHHHHHHHHhcCC---Cc
Confidence 68999999999999999999999999999999998887642 478888886654322 2234445554322 23
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
++++........... ....+...++.||+....+...+...+.
T Consensus 74 ii~lt~~~~~~~~~~-~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 74 VIMLTARGSELDRVL-GLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 333332221111111 1123566899999999999888887764
No 190
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=87.88 E-value=5.5 Score=41.37 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=78.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++++++..+......|...|+.+..+.+..+++..+.. ..++++++|......+ ....+..++... ..
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~ 77 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGED---GLSICRRLRSQN--NP 77 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 4679999999999999999999999999999999888877654 4467888876554322 223444454422 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..++++........... .-..+...++.||+....+.+.+...+..
T Consensus 78 ~pii~ls~~~~~~~~~~-~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 78 TPIIMLTAKGEEVDRIV-GLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred CCEEEEECCCcHHHHHH-HHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 23333333222111111 11235668999999999999988877653
No 191
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=87.50 E-value=2.7 Score=46.59 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=58.4
Q ss_pred CCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEE-c
Q 002879 748 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM-T 826 (871)
Q Consensus 748 g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal-T 826 (871)
|..++.+.+..++-..+ ..-.+|++|..| . ..-++... ..+..++++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----~--~~~~~~~~---------------------p~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW---ARAPLVLVDADM-----A--EACAAAGL---------------------PRRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhcc---ccCCeEEECchh-----h--hHHHhccC---------------------CCCCCEEEEeC
Confidence 55677777766654433 346899998754 1 12222211 122335544 4
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 827 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 827 a~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
...+.+....++.+|+.||+.+|++..+|.+.+.+..
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 4557889999999999999999999999999999874
No 192
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=87.06 E-value=3.3 Score=45.61 Aligned_cols=117 Identities=16% Similarity=0.236 Sum_probs=78.0
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.-..+++||+.+......+..|+..|+++..+.++..++...... +++.++.|..+...++ ..++..++......
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~mdg---~ev~~~lk~~~p~t 87 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMDG---AEVLNKLKAMSPST 87 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCccH---HHHHHHHHhcCCcc
Confidence 346799999999999999999999999999999999887765543 3888888876554443 34566666633332
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHH
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 696 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l 696 (871)
....+++.+.....+.....-..++..++.||++...+....
T Consensus 88 ~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 88 RRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARV 129 (360)
T ss_pred cccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHH
Confidence 322233333333222111111147778999999977766544
No 193
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=87.03 E-value=6.2 Score=40.55 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=75.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++++++..+......|...|+.+..+.+..+++..+.. ..++.+++|......+ ....+..++... ...
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~---g~~~~~~lr~~~--~~~ 73 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVN---GWDIVRMLRSAN--KGM 73 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999988888999999999999999888876543 3467888876554322 223444454432 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++........... .-..+...++.||+....+...+...+.
T Consensus 74 pii~ls~~~~~~~~~~-~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 74 PILLLTALGTIEHRVK-GLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CEEEEEcCCCHHHHHH-HHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3333332222111111 1123566899999999999888887764
No 194
>PRK11173 two-component response regulator; Provisional
Probab=86.39 E-value=6.8 Score=40.70 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=76.3
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++++++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...+...++.. ...+
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~---g~~~~~~lr~~--~~~p 76 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKN---GLLLARELREQ--ANVA 76 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCC---HHHHHHHHhcC--CCCC
Confidence 5789999999999999999999999999999999988876543 578888876553322 22344455442 1223
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
. +++.......... ..-..+...++.||+....+...+...+.
T Consensus 77 i-i~lt~~~~~~~~~-~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 77 L-MFLTGRDNEVDKI-LGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred E-EEEECCCCHHHHH-HHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 3 3333222211111 11123566899999999988877776654
No 195
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=86.02 E-value=1 Score=54.47 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred EEEEEecCCCCChhhHhhhcccccccC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVG 502 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~ 502 (871)
.|.|.|+|+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 499999999999999999999987643
No 196
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=85.89 E-value=16 Score=34.92 Aligned_cols=110 Identities=8% Similarity=0.031 Sum_probs=72.0
Q ss_pred eCCHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccccc
Q 002879 731 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 807 (871)
Q Consensus 731 dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 807 (871)
|-+..=..++..+|+..||+|+.. .+.++.++... ++.+|+|.+--.|.. -.+..+.+.+.-++
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~-e~~adii~iSsl~~~--~~~~~~~~~~~L~~---------- 79 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV-EADVHVVGVSSLAGG--HLTLVPALRKELDK---------- 79 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCchhh--hHHHHHHHHHHHHh----------
Confidence 445555678899999999999864 35677778775 467999988665522 23333333321100
Q ss_pred chhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh
Q 002879 808 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 861 (871)
Q Consensus 808 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~ 861 (871)
. ....++|+ +-+....++..+..++|+|+|+..=-+..+....+.+
T Consensus 80 ------~-g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 80 ------L-GRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred ------c-CCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 0 11234444 4444556678889999999999988888888777665
No 197
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=85.72 E-value=4.6 Score=40.57 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=75.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.-+.+|||+..-+......|...|+++....+..+-+.... ......++.|-.+....+ ..+...+...+.. -|
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--~~~pGclllDvrMPg~sG---lelq~~L~~~~~~-~P 78 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--LDRPGCLLLDVRMPGMSG---LELQDRLAERGIR-LP 78 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--CCCCCeEEEecCCCCCch---HHHHHHHHhcCCC-CC
Confidence 45789999999999999999999999999999988887621 122344555544433222 2234444443221 24
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.+++...+.-+-.-...+. |...++.||++.+.+.+++++++..
T Consensus 79 VIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 4544333222211122222 4457899999999999999988854
No 198
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=85.52 E-value=3.2 Score=50.50 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=58.3
Q ss_pred eEEEEeCC-HHH-----HHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccc
Q 002879 726 KILIVDDN-NVN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 799 (871)
Q Consensus 726 ~ILvVdDn-~~n-----~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 799 (871)
+||+|+++ ..+ .+.+...|++.|++|..+.+..+++.........++|+.|.+- -..++++.||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----- 73 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKM----- 73 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHh-----
Confidence 46666555 222 4667788999999999999999999988666678899999432 124477777763
Q ss_pred ccccccccchhhhccCCCCCccEEEEccCCC
Q 002879 800 NRIRRGEVSIEAYENVSNFHVPILAMTADVI 830 (871)
Q Consensus 800 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 830 (871)
+..+||+++.....
T Consensus 74 -----------------~~~~Pv~~~~~~~~ 87 (714)
T PRK15400 74 -----------------NENLPLYAFANTYS 87 (714)
T ss_pred -----------------CCCCCEEEEccccc
Confidence 34799999877543
No 199
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=84.92 E-value=8.3 Score=39.10 Aligned_cols=117 Identities=14% Similarity=0.188 Sum_probs=75.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++.........|...|+.+..+.+..+++..+.. ..++++++|......+ ...+...++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~i~~~~--~~~ 73 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD---GRDILREWREKG--QRE 73 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999998899999999999999998888877654 3468888886654322 223444454421 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++.......... ..-..+...++.||+....+...+...+.
T Consensus 74 ~ii~lt~~~~~~~~~-~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 74 PVLILTARDALAERV-EGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred cEEEEECCCCHHHHH-HHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 333333222211111 11123556789999999999888877664
No 200
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=84.32 E-value=8 Score=39.30 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=75.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++..+......|...|+.+..+.+..+++..+... .++.+++|......+ ...++..++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~---g~~~~~~l~~~~--~~~ 73 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDED---GLHLLRRWRQKK--YTL 73 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 3689999999999988999999999999999998888776543 467888876553322 223444444322 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++....+..... ..-..+...++.||+....+...+...+.
T Consensus 74 pii~ls~~~~~~~~~-~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 74 PVLILTARDTLEDRV-AGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred cEEEEECCCCHHHHH-HHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 333333222111111 11123566799999999999888877664
No 201
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=84.26 E-value=10 Score=39.77 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=54.7
Q ss_pred HHHHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC---------CC-CHHHHHHHHHhhhccccccccccccchh
Q 002879 743 GLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------EM-DGFEATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 743 ~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP---------~m-dG~e~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
.|-+.|+.|. |++|...|-.+.. -.+|+| || +. + .+.++.|++.
T Consensus 118 ~L~~~Gf~vlpyc~dd~~~ar~l~~--~G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~---------------- 173 (248)
T cd04728 118 ILVKEGFTVLPYCTDDPVLAKRLED--AGCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER---------------- 173 (248)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh----------------
Confidence 3445699876 6777777766552 457887 77 11 3 6777877762
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+|||+=-+-...++..+|++.|+|+++.
T Consensus 174 -------~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 174 -------ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred -------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 258999888888899999999999999964
No 202
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=84.26 E-value=13 Score=37.92 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=75.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++.........|...|+.+..+.+..+++..+.. ..++.+++|....... ....+..++... ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~ 76 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDIS---GFELCRQLLAFH--PAL 76 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 478999999998888888899999999988898888876643 3467888876553322 223444554432 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+++++........... .-..+...++.||+....+...+...+.
T Consensus 77 ~ii~ls~~~~~~~~~~-a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 77 PVIFLTARSDEVDRLV-GLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred CEEEEEcCCcHHHHHH-HhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 3333332222111111 1123566899999999999888877664
No 203
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=84.25 E-value=11 Score=38.40 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=75.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++.........++..|+.+..+.+..+++..+.. ..++.+++|......+ ...++..++... ..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~---~~ 74 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGED---GLMLTRELRSRS---TV 74 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhCC---CC
Confidence 478999999998888888999999999999999998877654 3478888876543322 223444555421 22
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++.......... ..-..+...++.||+....+...+...+.
T Consensus 75 ~ii~l~~~~~~~~~~-~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 75 GIILVTGRTDSIDRI-VGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred CEEEEECCCcHHHHH-HHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 333333222211111 11123566799999999988887766553
No 204
>CHL00148 orf27 Ycf27; Reviewed
Probab=84.01 E-value=12 Score=38.68 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=75.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
.++++++|+++.........|+..|+.+..+.+..+++..+.. ..++.+++|......+ ....+..++.. . .
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~--~-~ 77 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLD---GYGVCQEIRKE--S-D 77 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhc--C-C
Confidence 4689999999999998889999999999988898888876644 3467888876554322 22334444432 1 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++........... .-..+...++.||+....+...+...+.
T Consensus 78 ~~ii~ls~~~~~~~~~~-~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 78 VPIIMLTALGDVSDRIT-GLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred CcEEEEECCCCHHhHHH-HHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 23333332221111111 1122556789999999999888877664
No 205
>PRK00208 thiG thiazole synthase; Reviewed
Probab=83.83 E-value=11 Score=39.64 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=55.2
Q ss_pred HHHHHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC---------C-CCHHHHHHHHHhhhccccccccccccch
Q 002879 742 AGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFNNRIRRGEVSI 809 (871)
Q Consensus 742 ~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP---------~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~ 809 (871)
+.|-+.|+.|. |++|...|-.+.. -.+|+| || + .+ .+.++.|++.
T Consensus 117 ~~L~~~Gf~vlpyc~~d~~~ak~l~~--~G~~~v-----mPlg~pIGsg~gi~~-~~~i~~i~e~--------------- 173 (250)
T PRK00208 117 EILVKEGFVVLPYCTDDPVLAKRLEE--AGCAAV-----MPLGAPIGSGLGLLN-PYNLRIIIEQ--------------- 173 (250)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---------------
Confidence 34445699876 6777777766552 457887 77 1 13 6677777762
Q ss_pred hhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 810 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 810 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+|||+=-+-...++..+|++.|+|+++.
T Consensus 174 --------~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 174 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred --------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 258999888888899999999999999964
No 206
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=83.68 E-value=8 Score=39.59 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=75.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++.........|+..|+.+..+.+..+++..+.. ..++.+++|......+ .......+++.. ...|
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~l~~~lr~~~-~~~p 74 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDED---GLSLIRRWRSND-VSLP 74 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC-CCCC
Confidence 368999999998888889999999999999999998877653 3467888876543322 223344444422 1123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.+ ++.......... ..-..+...++.||+....+...+...+..
T Consensus 75 ii-~ls~~~~~~~~~-~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 75 IL-VLTARESWQDKV-EVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EE-EEEcCCCHHHHH-HHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 33 333222111111 111235667999999999998888877643
No 207
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=83.55 E-value=5.4 Score=40.83 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=71.8
Q ss_pred EEEEeCCchhhhHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 578 KALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
+||+++|++..+++.+.+++.. |+++ -.+.+..++...+..-.. +.+++|-=+ ++.... .++..++.....
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~p--DLILLDiYm--Pd~~Gi-~lL~~ir~~~~~-- 74 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKP--DLILLDIYM--PDGNGI-ELLPELRSQHYP-- 74 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCC--CEEEEeecc--CCCccH-HHHHHHHhcCCC--
Confidence 6899999999999999888875 6654 467888899888776443 778877543 333332 244555543222
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
..+ ++.+..+..+.-...-..|+..++.||+....+..+|.+-.
T Consensus 75 ~DV-I~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 75 VDV-IVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred CCE-EEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 222 22222222111111112367789999999999999887543
No 208
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=83.45 E-value=12 Score=38.18 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=75.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|......+ ....+..++... ..
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~---~~ 72 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD---GWQILQTLRTAK---QT 72 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCC---HHHHHHHHHcCC---CC
Confidence 368999999999988889999999999999999998877654 4478888876554332 223344444321 22
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++......... ...-..+...++.||+....+...+...+.
T Consensus 73 ~ii~ls~~~~~~~~-~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 73 PVICLTARDSVDDR-VRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred CEEEEECCCCHHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 33333322111111 111123566799999999999888887764
No 209
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=82.93 E-value=10 Score=39.32 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=75.5
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
+++++++++..+......|+..|+.+..+.+..+++..+.. ..++.+++|......+ ...+...++.. ....
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~~~~~ir~~---~~~p 74 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKD---GMTICRDLRPK---WQGP 74 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc---CCCC
Confidence 68999999999999999999999999999999988877654 3467888876543322 22344445442 1222
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
++++........... ....+...++.||+....+...+...+..
T Consensus 75 ii~l~~~~~~~~~~~-~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 75 IVLLTSLDSDMNHIL-ALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 333332222111111 11235668999999999988888776643
No 210
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=82.45 E-value=26 Score=33.51 Aligned_cols=108 Identities=11% Similarity=0.057 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHhhhcccccccccccc
Q 002879 733 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREMEHNFNNRIRRGEV 807 (871)
Q Consensus 733 n~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~md--G~e~~~~IR~~~~~~~~~~~~g~~ 807 (871)
+..-..++..+|+..||+|+.. ...++-++... ++.+|+|-+...|-..- --++.+++|+..
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~~~adiVglS~l~~~~~~~~~~~~~~l~~~g------------ 80 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-ETKADAILVSSLYGHGEIDCKGLRQKCDEAG------------ 80 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEecccccCHHHHHHHHHHHHHCC------------
Confidence 4445678899999999999963 45677777774 56899999888774221 122334444311
Q ss_pred chhhhccCCCCCccEEEEccCC--CHH----HHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 808 SIEAYENVSNFHVPILAMTADV--IQA----TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 808 ~~~~~~~~~~~~~pIIalTa~~--~~~----~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
...++ |++-+.. .++ ...+..++|++......-..+++...|++.+
T Consensus 81 ---------l~~~~-vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 81 ---------LEGIL-LYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred ---------CCCCE-EEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 11333 4454431 122 2446889999999998888899988888765
No 211
>PRK13435 response regulator; Provisional
Probab=82.42 E-value=20 Score=33.88 Aligned_cols=115 Identities=16% Similarity=0.167 Sum_probs=73.5
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
..++++++++..........+...|+.+. .+++..+++..+.. ..++.+++|....... ....+...+++. .
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~--~~~~~~~~l~~~--~- 77 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGP--TGVEVARRLSAD--G- 77 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCC--cHHHHHHHHHhC--C-
Confidence 46899999999999989999999999976 67888888776543 3568888876442211 112233333332 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...++++...... .. ....+...++.||+....+...+.+...
T Consensus 78 ~~pii~ls~~~~~--~~--~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 78 GVEVVFMTGNPER--VP--HDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred CCCEEEEeCCHHH--HH--HHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2334444332211 11 1123566899999999999998887763
No 212
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=82.36 E-value=11 Score=39.48 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=73.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+++++|+++..+......|.+. |+.+ ..+++..+++..+......++++++|..+...+. ...+..+++...
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G---~eli~~l~~~~~-- 76 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENG---LDLLPVLHEAGC-- 76 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCc---HHHHHHHHhhCC--
Confidence 36899999999888888888764 6764 4678888888776544455788888876544332 233444444321
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHH
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 699 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 699 (871)
..+++++............ -..+...++.||.....+..++.+.
T Consensus 77 ~~~vI~ls~~~~~~~~~~a-l~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 77 KSDVIVISSAADAATIKDS-LHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCEEEEECCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2334444332222111111 1235668999999999888888653
No 213
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=82.31 E-value=0.93 Score=55.46 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=23.9
Q ss_pred CceEEecH---HHHHHHHHHHHHHhhccCCC---CeEEEEE
Q 002879 381 PETLIGDP---GRFRQIITNLMGNSIKFTEK---GHIFVTV 415 (871)
Q Consensus 381 p~~v~~D~---~rl~qIl~NLl~NAiKfT~~---G~I~v~v 415 (871)
|.+.+|+- .-|.+++.-||+|||.-.-. ..|.|.+
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i 65 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTI 65 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEE
Confidence 55666643 45899999999999983323 3555554
No 214
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=82.24 E-value=8.2 Score=39.50 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=74.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..... ..++.+++|......+ .......++.. ...+
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~--~~~p 74 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQW--SAIP 74 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHcC--CCCC
Confidence 368999999999998899999999999999998888776543 3468888876554322 22334445432 1223
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
. +++......... ...-..+...++.||+....+...+...+.
T Consensus 75 v-i~lt~~~~~~~~-~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 75 V-IVLSARSEESDK-IAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred E-EEEECCCCHHHH-HHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3 333322111111 111123556799999999999888877664
No 215
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=81.27 E-value=16 Score=38.88 Aligned_cols=120 Identities=11% Similarity=0.195 Sum_probs=75.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+++++|+++.........+... ++.+ ..+.+..+++..+.. ..++.+++|..+...+. ..++..++......
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG---~~~l~~i~~~~~~~ 77 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDG---IGVLEKLNEIELSA 77 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHHHhhcccc
Confidence 57899999999988888888764 5554 468899999887754 34788888876544332 23344454433222
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.+.++++... ............+...++.||+....+...+.+.+..
T Consensus 78 ~~~iI~lt~~-~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 78 RPRVIMLSAF-GQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCeEEEEeCC-CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 2444444322 2111111112235668999999999999999887643
No 216
>PRK13856 two-component response regulator VirG; Provisional
Probab=81.10 E-value=13 Score=38.82 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=74.5
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
+++++++++..+......|+..|+.+..+.+..+++..+.. ..++++++|......+ ...++..++.. ...|.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~---g~~l~~~i~~~--~~~pi 75 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGRED---GLEIVRSLATK--SDVPI 75 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCCcE
Confidence 68999999999999999999999999999999888876643 3468888876553322 12234444432 12233
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+++........... ..-..+...++.||+....+...+...+.
T Consensus 76 i~lt~~~~~~~~~~-~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 76 IIISGDRLEEADKV-VALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred EEEECCCCcHHHHH-HHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 33322111111111 11123566899999999998888877664
No 217
>PRK15115 response regulator GlrR; Provisional
Probab=80.77 E-value=8.3 Score=44.69 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=78.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......++..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ..
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~---g~~ll~~l~~~~--~~ 77 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMD---GMQLFAEIQKVQ--PG 77 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhcC--CC
Confidence 3689999999999999999999999999999999999887754 3468888886653332 223344444321 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++........... ....+...++.||+....+...+...+.
T Consensus 78 ~pvIvlt~~~~~~~~~~-a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 78 MPVIILTAHGSIPDAVA-ATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred CcEEEEECCCCHHHHHH-HHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 33333332221111111 1123566789999999999998887764
No 218
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=80.73 E-value=9.2 Score=35.31 Aligned_cols=93 Identities=25% Similarity=0.280 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeC-CCCCCC-HHHHHHHHHhhhcccccccccccc
Q 002879 733 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDI-QMPEMD-GFEATKIIREMEHNFNNRIRRGEV 807 (871)
Q Consensus 733 n~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi-~MP~md-G~e~~~~IR~~~~~~~~~~~~g~~ 807 (871)
.+.-...+..+|++.|++|... .+.++..+.+. ..+||+|.+.. ..+... ..++++.+|+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~-~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~------------- 78 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR-AERPDVVGISVSMTPNLPEAKRLARAIKER------------- 78 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH-HTTCSEEEEEESSSTHHHHHHHHHHHHHTT-------------
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh-cCCCcEEEEEccCcCcHHHHHHHHHHHHhc-------------
Confidence 3556788999999999999876 23455556553 45799999988 444332 34444554442
Q ss_pred chhhhccCCCCCccEEEEccCCCHHHHHHHHH--cCCCEEEeCC
Q 002879 808 SIEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKP 849 (871)
Q Consensus 808 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~--~G~d~yl~KP 849 (871)
.++++|++ -+..-....+++++ .|+|..+.-.
T Consensus 79 ---------~p~~~iv~-GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 79 ---------NPNIPIVV-GGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp ---------CTTSEEEE-EESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred ---------CCCCEEEE-ECCchhcChHHHhccCcCcceecCCC
Confidence 34455554 44444455566675 7988877644
No 219
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=80.62 E-value=1.1 Score=53.77 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=31.2
Q ss_pred EEEEEecCCCCChhhHh-----------hhccccccc---CCCCCCCCCcccccHHHHHHHHHHc
Q 002879 476 IVSVEDTGQGIPLEAQS-----------RIFTPFMQV---GPSISRTHGGTGIGLSISKYLVGRM 526 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~-----------~iF~pF~q~---~~s~~~~~~GtGLGLsI~k~lv~~~ 526 (871)
.|+|.|+|.|||-+... -||.-.... +.+..-..|-.|.|.+.|.-|-+.+
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 38999999999986542 223222111 1121222344899999998877665
No 220
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=80.62 E-value=19 Score=36.85 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=74.5
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
+++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|........+ ...+...++... ....
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~~-g~~~~~~i~~~~--~~~p 76 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEIDG-GFMLCQDLRSLS--ATLP 76 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCCC-HHHHHHHHHhcC--CCCC
Confidence 589999999988888899999999999998988888776543 46788887654331111 223444554432 1222
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
++++......... ...-..+...++.||.....+...+...+.
T Consensus 77 ii~ls~~~~~~~~-~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 77 IIFLTARDSDFDT-VSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EEEEECCCCHHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 3333322211111 111123566899999999988888877664
No 221
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=80.45 E-value=1.1 Score=54.18 Aligned_cols=51 Identities=29% Similarity=0.539 Sum_probs=30.2
Q ss_pred EEEEEecCCCCChhhHh--------hhcccccc---cCCCCCCCCCc-ccccHHHHHHHHHHc
Q 002879 476 IVSVEDTGQGIPLEAQS--------RIFTPFMQ---VGPSISRTHGG-TGIGLSISKYLVGRM 526 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~--------~iF~pF~q---~~~s~~~~~~G-tGLGLsI~k~lv~~~ 526 (871)
.|+|.|+|.|||-+..+ -+|.-... .|.+..+..|| .|.|++.|..|-+.+
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 48999999999975332 23332211 11222222233 799999988877643
No 222
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=79.89 E-value=19 Score=36.94 Aligned_cols=121 Identities=10% Similarity=0.138 Sum_probs=75.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc-E-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~-~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
+.+++++|+++.........|...+. . +..+.+..+++..+.. ..++.+++|.............++..++...
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~-- 78 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHF-- 78 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC--
Confidence 46899999999998888888887664 3 6678888888877654 3468888876544321001223445554421
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...+++++........... ....|...++.||.....+..++..++.
T Consensus 79 ~~~~iIvls~~~~~~~~~~-a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSA-VLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCCcEEEEEecCCHHHHHH-HHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 1234444443322211111 1223667899999999999988887653
No 223
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=79.80 E-value=5.6 Score=45.90 Aligned_cols=116 Identities=16% Similarity=0.312 Sum_probs=76.1
Q ss_pred EEEEeCCchhhhHHHHHHHHH--hCcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 578 KALVVDPRPIRAKVSRYHIQR--LGIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~--~g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
+|++|||.+.-++-.+..+.. +|+.+ ..|.++.+|+..+.. ..++.++.|-.+...++- .+...++.. ..
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGL---dLI~~ike~--~p 75 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGL---DLIKAIKEQ--SP 75 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHH---HHHHHHHHh--CC
Confidence 689999999988888777654 57664 468899999998876 457788888777655542 233444432 22
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
....+++ ++.+.-+-....-..|+..++.||+....+..+|.+..+
T Consensus 76 ~~~~IIL-SGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 76 DTEFIIL-SGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred CceEEEE-eccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 3344433 333221111112234667899999999999999988765
No 224
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=79.52 E-value=2.2 Score=50.51 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=28.7
Q ss_pred EEEEEEecCCCCChhhHhhhc--------cccccc---CCCCCCCCCcccccHHHHHHHH
Q 002879 475 LIVSVEDTGQGIPLEAQSRIF--------TPFMQV---GPSISRTHGGTGIGLSISKYLV 523 (871)
Q Consensus 475 l~i~V~DtG~GI~~e~~~~iF--------~pF~q~---~~s~~~~~~GtGLGLsI~k~lv 523 (871)
=.++|+||||||+.++...-. ..|.+. +...+.--|-.|+|++=|--.+
T Consensus 74 kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeee
Confidence 368999999999998754321 112111 1111223466888888665444
No 225
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=79.49 E-value=42 Score=31.86 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhhhcccccccccccc
Q 002879 733 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREMEHNFNNRIRRGEV 807 (871)
Q Consensus 733 n~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~~~~~~~~~~~g~~ 807 (871)
+..-..++..+|+..||+|+-. ...++-++... .+.+|+|.+...|.. |.. -++.+.+|+.
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~-~~~adiVglS~L~t~~~~~~~~~~~~l~~~------------- 77 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-ETDADAILVSSLYGHGEIDCKGLREKCDEA------------- 77 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCCHHHHHHHHHHHHHC-------------
Confidence 3445678889999999999853 45566677664 568999998887753 322 2344455542
Q ss_pred chhhhccCCCCCccEEEEccCC--C----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Q 002879 808 SIEAYENVSNFHVPILAMTADV--I----QATYEECLRSGMDGYVSKPFEAEQLYREVS 860 (871)
Q Consensus 808 ~~~~~~~~~~~~~pIIalTa~~--~----~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~ 860 (871)
....+||+ +-+.. . .++..+..++|++......-+++++...|+
T Consensus 78 --------gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 78 --------GLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred --------CCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 11245544 33331 1 345566889999999998888888877665
No 226
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=79.44 E-value=18 Score=37.03 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhh
Q 002879 724 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREM 794 (871)
Q Consensus 724 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~ 794 (871)
+.+||+. |-+..=..++..+|+..|++|+... ..++-++.+. ...||+|-+-+.|+.. +..++.+.+|+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-EHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 3578888 8888888999999999999998532 3456666664 5789999999877654 223344555542
Q ss_pred hccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 795 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 795 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
. ....++|++=-+.... + -+-..|+|.|-.=
T Consensus 161 ~--------------------~~~~~~i~vGG~~~~~-~--~~~~~GaD~~~~d 191 (201)
T cd02070 161 G--------------------LRDKVKVMVGGAPVNQ-E--FADEIGADGYAED 191 (201)
T ss_pred C--------------------CCcCCeEEEECCcCCH-H--HHHHcCCcEEECC
Confidence 1 1225666655444433 2 4667799998753
No 227
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=79.35 E-value=13 Score=37.39 Aligned_cols=117 Identities=10% Similarity=0.204 Sum_probs=75.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
++++++|+++.........|+..|+.+. .+.+..+++..+.. ..++.+++|....... ...+...++.... .
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~~--~ 73 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 73 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCC---HHHHHHHHHhhCC--C
Confidence 4689999999999888899999999987 68888888877654 3468888876543322 2234444443221 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++........... .-..+...++.||+....+...++..+.
T Consensus 74 ~~ii~ls~~~~~~~~~~-~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 74 GIIIIVSAKNDHFYGKH-CADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CeEEEEeCCCCHHHHHH-HHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 23333333222111111 1123567899999999999999888763
No 228
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=79.21 E-value=9.2 Score=50.40 Aligned_cols=118 Identities=15% Similarity=0.282 Sum_probs=79.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..++|+||+++..+......|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ...
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~---g~~~~~~i~~~~-~~~ 1031 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMD---GFELTRKLREQN-SSL 1031 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC-CCC
Confidence 4689999999999999999999999999999999999988754 4578888886554322 223344444322 112
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+ ++++.......... .....+...++.||+....+...+.+...
T Consensus 1032 p-ii~lt~~~~~~~~~-~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1032 P-IWGLTANAQANERE-KGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred C-EEEEECCCCHHHHH-HHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 3 33332222211111 11123567899999999999988877654
No 229
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=78.95 E-value=12 Score=43.67 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=76.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.++++||+++..+......|...|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ...
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~d---gl~~l~~ir~~~--~~~ 76 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMD---GLALLKQIKQRH--PML 76 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 579999999999999999999999999999999999888764 3468888886654322 223344444322 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++......... ...-..+...++.||+....+...+...+.
T Consensus 77 pvIvlt~~~~~~~~-~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 77 PVIIMTAHSDLDAA-VSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred eEEEEECCCCHHHH-HHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 33333322221111 111123566899999998888887766553
No 230
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=78.85 E-value=7.9 Score=44.72 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=76.4
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......+..+|+.+..+.+..+++..+.. ..++++++|..+...+ .......+++.. ..
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~---G~~~~~~ir~~~--~~ 77 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMD---GIATLKEIKALN--PA 77 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 3689999999999999999999999999999999999887754 3468888887654422 222344444321 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++........... .-..+...++.||+....+...+...+.
T Consensus 78 ~~vi~lt~~~~~~~~~~-a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 78 IPVLIMTAYSSVETAVE-ALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CeEEEEECCCCHHHHHH-HHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 23333332211111111 1112455788999999988888876653
No 231
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=78.62 E-value=14 Score=38.30 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=69.3
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC-CH-HHHHHHHHhhh
Q 002879 725 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREME 795 (871)
Q Consensus 725 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~m-dG-~e~~~~IR~~~ 795 (871)
.+|++. |.+..=..++..+|+..|++|+... ..++.++.+. .+++|+|.+-..|+.- .. -++.+++++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~-~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~- 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK-EHKADIIGLSGLLVPSLDEMVEVAEEMNRR- 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEccchhccHHHHHHHHHHHHhc-
Confidence 478888 8888889999999999999998754 3455566664 5789999999888632 22 2334444431
Q ss_pred ccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHH---HHHcCCCEEEeCCCC
Q 002879 796 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---CLRSGMDGYVSKPFE 851 (871)
Q Consensus 796 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~---~~~~G~d~yl~KP~~ 851 (871)
..+++|++=-+-..++...+ |-..|+|.|-.=..+
T Consensus 167 ---------------------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~ 204 (213)
T cd02069 167 ---------------------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASR 204 (213)
T ss_pred ---------------------CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHH
Confidence 22577776555444444433 345799999754433
No 232
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=78.46 E-value=35 Score=30.13 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=70.7
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
..+++++++++.........+..+|.. +..+.+..+++..... ..++.++++...... ........+++.....
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~---~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNM---DGLELLKTIRADGAMS 79 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCC---CHHHHHHHHHhCCCcC
Confidence 367899999999988888999999984 7778888888776543 346777776433221 1223344454432222
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
...++++.......... .....+...++.||+....+...+++.+
T Consensus 80 ~~~~i~~~~~~~~~~~~-~~~~~g~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 80 ALPVLMVTAEAKKENII-AAAQAGASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred CCcEEEEECCCCHHHHH-HHHHhCCCeEEECCCCHHHHHHHHHHHH
Confidence 22233333221111111 1111245678899999988887776654
No 233
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=77.58 E-value=17 Score=37.72 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=74.7
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++..+......|.+. |+. +..+.+..+++..+.. ..++.+++|..+...+ ...++..+++...
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~---gle~~~~l~~~~~- 77 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGR---GINLLHELVQAHY- 77 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCc---HHHHHHHHHhcCC-
Confidence 368999999999988888888864 774 6788999999888754 3468888887654332 2234444544221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
...++++........... .-..+...++.||+....+...+++..
T Consensus 78 -~~~iivls~~~~~~~~~~-al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 78 -PGDVVFTTAASDMETVSE-AVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred -CCCEEEEEcCCCHHHHHH-HHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 223444433222111111 112356689999999999998887653
No 234
>PRK09191 two-component response regulator; Provisional
Probab=75.11 E-value=31 Score=36.33 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=73.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
.+++++|+++..+......|+..|+.+. .+.+..+++..+.. ..++.+++|....... .....+..++... ..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~--~g~e~l~~l~~~~--~~ 211 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGS--SGIDAVNDILKTF--DV 211 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCC--CHHHHHHHHHHhC--CC
Confidence 4689999999999999999999999987 67888888877654 3578888887643211 1222344444433 22
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+ ++++..... ... .....+...++.||+....+...+.+.+.
T Consensus 212 p-ii~ls~~~~-~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 212 P-VIFITAFPE-RLL--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred C-EEEEeCCCc-HHH--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 3 333332211 111 11111234578999999999999887653
No 235
>PRK14084 two-component response regulator; Provisional
Probab=74.05 E-value=26 Score=36.62 Aligned_cols=115 Identities=14% Similarity=0.309 Sum_probs=73.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC-c-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLG-I-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
++++++|+++..+......+..++ + .+..+.+..+++..+.. ..++.+++|..+...+ .......+++.. .
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~---G~~~~~~i~~~~--~ 73 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDES---GIELAAKIQKMK--E 73 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--C
Confidence 368999999998888888998876 3 46678888888887754 3578888887665332 223344444422 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+.++.++ +.... .. ..-..+...++.||+....+..++.+...
T Consensus 74 ~~~iI~~t-~~~~~-~~-~~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 74 PPAIIFAT-AHDQF-AV-KAFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred CCEEEEEe-cChHH-HH-HHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 23333332 22211 11 11123456799999999999999887753
No 236
>PRK09483 response regulator; Provisional
Probab=73.31 E-value=27 Score=35.27 Aligned_cols=117 Identities=9% Similarity=0.122 Sum_probs=74.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+++++|+++..+......|+.+ |+.+. .+++..+++..+.. ..++.+++|......+ ...++..+++.. .
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~--~ 74 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIG---GLEATRKILRYT--P 74 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHC--C
Confidence 36899999999998888888875 78775 67888888876654 3468888886654322 222344444322 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..+++++............ -..+...++.||.....+..++..++.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 75 DVKIIMLTVHTENPLPAKV-MQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred CCeEEEEeCCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 2334444332222111111 123566899999999999999887764
No 237
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=73.20 E-value=13 Score=47.24 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=33.9
Q ss_pred CcccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCC
Q 002879 571 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 608 (871)
Q Consensus 571 ~~~~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~ 608 (871)
...+.|.+++++|+++..+.+...+|++||+.|..+.+
T Consensus 684 ~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~ 721 (894)
T PRK10618 684 EKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDE 721 (894)
T ss_pred cccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 34578999999999999999999999999999988875
No 238
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=73.06 E-value=51 Score=33.84 Aligned_cols=116 Identities=13% Similarity=0.186 Sum_probs=74.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++.........|...|+.+..+.+..+++..+.. ..++.+++|....... .......++.. . ..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~--~-~~ 82 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTD---GLTLCREIRRF--S-DI 82 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc--C-CC
Confidence 378999999999999999999999999999999888887653 3467888876543322 22334444432 1 22
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++........... .-..+...++.||+....+...+...+.
T Consensus 83 pii~l~~~~~~~~~~~-~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 83 PIVMVTAKIEEIDRLL-GLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred CEEEEEcCCCHHHHHH-HHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 3333333222111111 1122556799999999988887776654
No 239
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=72.66 E-value=26 Score=35.37 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=72.4
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceE
Q 002879 579 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 658 (871)
Q Consensus 579 ~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (871)
++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|......+ ....+..++... ....+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~~i 73 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMD---GWQILQTLRRSG--KQTPV 73 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHccC--CCCcE
Confidence 3678888888888888889999999999999998877654 3477888876543322 223344444322 12233
Q ss_pred EEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 659 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 659 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+++............ -..+...++.||.....+...+...+.
T Consensus 74 ivls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 74 LFLTARDSVADKVKG-LDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred EEEEcCCCHHHHHHH-HHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 333332221111111 122566799999999999888877664
No 240
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=72.41 E-value=29 Score=34.99 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=72.3
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
+++++|+++.........+...|..+..+.+..++...+.. ..++.+++|....... .......++.... ...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~---~~~~~~~i~~~~~--~~~ 74 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMD---GLEVLQRLRKRGQ--TLP 74 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCc---HHHHHHHHHhcCC--CCC
Confidence 67899999988888888899999999989888888766543 3467788776543222 2223444443221 223
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
++++........... .-..+...++.||.....+...+...+.
T Consensus 75 ii~lt~~~~~~~~~~-~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 75 VLLLTARSAVADRVK-GLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 333332221111111 1122566799999999999888877654
No 241
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.23 E-value=24 Score=37.92 Aligned_cols=114 Identities=16% Similarity=0.265 Sum_probs=74.1
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
++++||++..........|.+.|-.+..+++..+++..+... .+|.+++|-.+.... ...+.+..+.... .-+.
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~n---giefaeQvr~i~~-~v~i 75 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMN---GIEFAEQVRDIES-AVPI 75 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCcc---HHHHHHHHHHhhc-cCcE
Confidence 689999999999999999999998888999999999888764 456677766543222 2234444444321 1122
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+++ ++-. +......+.....+++||+++..|..++.+...
T Consensus 76 ifI--ssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 76 IFI--SSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred EEE--ecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 332 2211 111111122234789999999999999887763
No 242
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=72.03 E-value=19 Score=41.74 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=76.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
+.+++++|+++..+......|..+|+.+..+.+..+++..+... .++.+++|..+...+ ...++..+++.. . .
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~---g~~ll~~i~~~~-~-~ 76 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMD---GIKALKEMRSHE-T-R 76 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC-C-C
Confidence 35799999999999989999999999999999999998877543 468888886654322 223444444422 1 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++... .........-..+...++.||+....+...+...+.
T Consensus 77 ~pvI~lt~~-~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 77 TPVILMTAY-AEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CCEEEEeCC-CCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 233333322 211111111123566899999999888888776654
No 243
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.65 E-value=50 Score=30.05 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=60.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.++.++|.++... ..+...|+.+...+-. .+.++.+. -...+.+++...-. ..-+.++..+|++.
T Consensus 22 ~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~a~-i~~a~~vv~~~~~d-~~n~~~~~~~r~~~-------- 87 (116)
T PF02254_consen 22 IDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLERAG-IEKADAVVILTDDD-EENLLIALLARELN-------- 87 (116)
T ss_dssp SEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHHTT-GGCESEEEEESSSH-HHHHHHHHHHHHHT--------
T ss_pred CEEEEEECCcHHH----HHHHhcccccccccchhhhHHhhcC-ccccCEEEEccCCH-HHHHHHHHHHHHHC--------
Confidence 4799999998764 3445567777765544 44455553 45689888877532 44566777888753
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+..+|++... +.+......++|+|..+.
T Consensus 88 --------------~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 88 --------------PDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp --------------TTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred --------------CCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 3467887664 455666778899998764
No 244
>PRK13557 histidine kinase; Provisional
Probab=69.78 E-value=50 Score=38.78 Aligned_cols=121 Identities=19% Similarity=0.257 Sum_probs=78.2
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccc-cCcchhHHHHHHhhhcCC
Q 002879 574 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLGC 652 (871)
Q Consensus 574 ~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~ 652 (871)
..+.+++++++++.........|+.+|+.+..+.+..+++..+... ..+++++++..... .+ ...++..++....
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~---~~~~~~~l~~~~~ 488 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMN---GVMLAREARRRQP 488 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCC---HHHHHHHHHHhCC
Confidence 4567899999999999999999999999999999999888876432 35778888765543 22 1233444443221
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 653 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 653 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...++++........ .......+...++.||+....+...+...+.
T Consensus 489 --~~~ii~~~~~~~~~~-~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 489 --KIKVLLTTGYAEASI-ERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred --CCcEEEEcCCCchhh-hhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 123333332222111 1111122445789999999999998887664
No 245
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=67.62 E-value=45 Score=34.53 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=72.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
++++++|+++..+......+..+| .. +..+.+..+++..+.. ..++++++|.++...++ ..+...++. ..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G---~~~~~~l~~---~~ 73 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISG---LELVGMLDP---EH 73 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHhcc---cC
Confidence 478999999999998889999888 33 4567888888877654 35788998877654322 222333321 11
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+.++++... ... .. ..-..+...++.||+....+..++.+...
T Consensus 74 ~~~ii~vt~~-~~~-~~-~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 74 MPYIVFVTAF-DEY-AI-KAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred CCEEEEEecc-HHH-HH-HHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2334433322 211 11 11112455789999999999998888764
No 246
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=66.23 E-value=0.58 Score=57.45 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.1
Q ss_pred Cc-ccccHHHHHHHHHHc
Q 002879 510 GG-TGIGLSISKYLVGRM 526 (871)
Q Consensus 510 ~G-tGLGLsI~k~lv~~~ 526 (871)
|| .|.|++.|..|-+.+
T Consensus 247 GGLHGVG~SVVNALS~~l 264 (903)
T PTZ00109 247 SGLHGVGLSVVNALSSFL 264 (903)
T ss_pred CcCCCcceeeeeeccCeE
Confidence 45 799999999888776
No 247
>PLN03237 DNA topoisomerase 2; Provisional
Probab=65.53 E-value=10 Score=49.55 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=32.6
Q ss_pred EEEEEecCCCCChhhHh--------hhccccccc---CCCCCCCCCc-ccccHHHHHHHHHHcCC
Q 002879 476 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKG 528 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~~gG 528 (871)
.|+|.|+|.|||-+..+ -||.-.... |.+..+..|| .|.|.+.|.-|-+.+--
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~V 176 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVI 176 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEE
Confidence 48999999999986432 244443322 1111222344 79999998887765533
No 248
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=65.00 E-value=10 Score=38.27 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=44.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCE---EEEEcCHHHHHHHh-CCCCCccEEEEeCCCCCCCHH---HHHHHHH
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAA---VVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGF---EATKIIR 792 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~---v~~a~~g~eAl~~l-~~~~~~DlilmDi~MP~mdG~---e~~~~IR 792 (871)
+++..||-|+.....++.-+++.|.. .+...|...++... .....||+||+|- |-..+. +++..|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 58999999999999999999998843 34556767777655 2357899999994 555443 3555554
No 249
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=64.74 E-value=61 Score=33.62 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=56.3
Q ss_pred HHHHHHHH-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC-------CCCCCHHHHHHHHHhhhccccccccccccch
Q 002879 739 VAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSI 809 (871)
Q Consensus 739 ~l~~~L~~-~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~ 809 (871)
.+....++ .|..+. .+.+.+++.... ...+|+|..... .+...+++++++|++.
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~--~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~--------------- 171 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQ--KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA--------------- 171 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHH--HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh---------------
Confidence 34444555 566554 456777776554 345898855321 1223347788888862
Q ss_pred hhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 810 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 810 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+||++..+-.+.++..++++.|+|+++.
T Consensus 172 --------~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 --------VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred --------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 258999988877899999999999998864
No 250
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=64.61 E-value=71 Score=32.98 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=73.3
Q ss_pred EEEEeCCchhhhHHHHHHHHHhC-cEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLG-IQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g-~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
+++++|+.+..+.-.+..|...+ ++|. .+.+..+++... ....++.+++|..+...+ .......+++.. ..
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~--~~~~pdvvl~Dl~mP~~~---G~e~~~~l~~~~--p~ 74 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA--RELKPDVVLLDLSMPGMD---GLEALKQLRARG--PD 74 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh--hhcCCCEEEEcCCCCCCC---hHHHHHHHHHHC--CC
Confidence 58999999999998888888776 6644 556688887763 335678888886554422 223344444221 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++++........... -..|...++.|......+..+++.++.
T Consensus 75 ~~vvvlt~~~~~~~v~~a-l~~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 75 IKVVVLTAHDDPAYVIRA-LRAGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred CcEEEEeccCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 244444443332221111 223567899999999999999988764
No 251
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=62.89 E-value=26 Score=33.80 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=44.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEc----CHHHHHHHhCCCCCccEEEEeCCCCC
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE----RGKKATELLMPPHQFDACFMDIQMPE 781 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~----~g~eAl~~l~~~~~~DlilmDi~MP~ 781 (871)
+.|++|+|+..+....+-+..+|.+.|+.|..+. |.+++++ .-|+|+.-.--|.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh------hCCEEEEecCCCC
Confidence 5689999999999999999999999999999988 5554432 3699998887663
No 252
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=62.59 E-value=1.5e+02 Score=28.62 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=78.8
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHHcCCEEEE---EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcc
Q 002879 725 RKILIV----DDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 797 (871)
Q Consensus 725 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~---a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~ 797 (871)
+||||. |-+..-.+++...|+..|++|+. ..+..|++.... .+..|+|.+... .-...+++..+++.-.+
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~-~~dv~vIgvSsl--~g~h~~l~~~lve~lre 89 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV-EEDVDVIGVSSL--DGGHLTLVPGLVEALRE 89 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH-hcCCCEEEEEec--cchHHHHHHHHHHHHHH
Confidence 456654 77777889999999999999995 678899998874 467898877542 22334555555543211
Q ss_pred ccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 798 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 798 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
.| ..++. +.+-+.-..++..+..+.|++.++.-=....+....|..-
T Consensus 90 ------~G-----------~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 90 ------AG-----------VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred ------hC-----------CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 11 12333 3455555667777788899999998777777666655443
No 253
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=62.29 E-value=75 Score=34.00 Aligned_cols=99 Identities=15% Similarity=0.039 Sum_probs=67.2
Q ss_pred HHHHHHHcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCC
Q 002879 740 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 817 (871)
Q Consensus 740 l~~~L~~~g~~--v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 817 (871)
++..|+.-... +.+......+.+.+. ...||.|++|++=-.+|--++...||..+.
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~--------------------- 67 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLG-LAGFDWLVLDGEHAPNDVSTFIPQLMALKG--------------------- 67 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHH-hcCCCEEEEccccCCCCHHHHHHHHHHHhh---------------------
Confidence 55666553221 223334456667664 356999999999999998888888887532
Q ss_pred CCccEEEEccCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHh
Q 002879 818 FHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVS 860 (871)
Q Consensus 818 ~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~-~~~~L~~~l~ 860 (871)
..++.++=....+.....+++++|+++.+.-=+ +.++..+.++
T Consensus 68 ~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 68 SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 234445555667889999999999999987555 4455555554
No 254
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=62.15 E-value=1.1e+02 Score=31.30 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=58.8
Q ss_pred HcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCC--------CHHHHHHHHHhhhccccccccccccchhhhccCC
Q 002879 746 RYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEM--------DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 816 (871)
Q Consensus 746 ~~g~~v~~-a~~g~eAl~~l~~~~~~DlilmDi~MP~m--------dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~ 816 (871)
..|..+-. +.+-.++.+... ...|+|...--.|.. .|++.++++++.
T Consensus 102 ~~~~~~g~~~~t~~e~~~a~~--~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------- 157 (212)
T PRK00043 102 GPDAIIGLSTHTLEEAAAALA--AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA---------------------- 157 (212)
T ss_pred CCCCEEEEeCCCHHHHHHHhH--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------
Confidence 34444333 345566666552 468999887555543 468888888763
Q ss_pred CCCccEEEEccCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHhh
Q 002879 817 NFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 861 (871)
Q Consensus 817 ~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~-----KP~~~~~L~~~l~~ 861 (871)
..++||++.-+ ...+...+++++|++++.. +.-++.+..+.+.+
T Consensus 158 ~~~~~v~a~GG-I~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 158 VGDIPIVAIGG-ITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred cCCCCEEEECC-cCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 12388887655 4688899999999999985 44455555544443
No 255
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=61.92 E-value=27 Score=36.33 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=42.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC--EEEEEc--CHHHHHHHhCCCCCccEEEEeCCCC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVE--RGKKATELLMPPHQFDACFMDIQMP 780 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~--~g~eAl~~l~~~~~~DlilmDi~MP 780 (871)
-+|.-+|-|+...+.+++.+++.|. .+.... +..+.++.. ....||+||+|..=+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK~ 143 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADKA 143 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCChh
Confidence 3899999999999999999999986 344544 555555542 247899999998643
No 256
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=61.44 E-value=39 Score=28.20 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=61.2
Q ss_pred EeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEE
Q 002879 581 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 660 (871)
Q Consensus 581 ~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 660 (871)
++++++.........+..+|+.+..+.+...++..+.. ..++.++++........ ......++.. .. ...+++
T Consensus 2 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~---~~~~~~l~~~-~~-~~~~i~ 74 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDG---LELLRRIRKR-GP-DIPIIF 74 (113)
T ss_pred eecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCch---HHHHHHHHHh-CC-CCCEEE
Confidence 56777777777778888889999888888888776654 34677777655433221 2233344333 11 222333
Q ss_pred EeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHH
Q 002879 661 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 698 (871)
Q Consensus 661 l~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 698 (871)
+............ ...+...++.+|.....+...+..
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 75 LTAHGDDEDAVEA-LKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred EEecccHHHHHHH-HHcChhhHccCCCCHHHHHHHHHh
Confidence 3222111111011 112445677888888777776653
No 257
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=61.36 E-value=54 Score=32.42 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=69.8
Q ss_pred EEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 578 KALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
+++++|+++..+......+... ++. +..+++..+++..+.. ..++.+++|......+ ...++..++. .
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~-----~ 72 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDIS---GLELLSQLPK-----G 72 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHcc-----C
Confidence 6899999998888888888654 565 5677888888877653 3468888876543322 1223333331 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++............ -..+...++.||+....+...+..++.
T Consensus 73 ~~vi~~s~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 73 MATIMLSVHDSPALVEQA-LNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCEEEEECCCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 234444332221111111 122566899999999999999887774
No 258
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=61.33 E-value=43 Score=38.76 Aligned_cols=116 Identities=12% Similarity=0.169 Sum_probs=69.8
Q ss_pred EEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccC--cchhHHHHHHhhhcCCCCCc
Q 002879 579 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 579 ~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++|+++..+......+ .|+.+..+.+..+++..+... .++++++|..+.... .......+..+++.. ...
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCC
Confidence 367888887777766666 789999999999999887653 568888886554311 112223344444322 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++...+....... -..+...++.||+....+...+..++.
T Consensus 75 piI~lt~~~~~~~~~~a-~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 75 KVIVITGNDDRENAVKA-IGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CEEEEecCCCHHHHHHH-HHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 23333322221111111 112566799999999988887776553
No 259
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=60.98 E-value=72 Score=33.24 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHH
Q 002879 758 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833 (871)
Q Consensus 758 ~eAl~~l~~~~~~D-lilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 833 (871)
.+.++.+. ....| ++++|+.--++ .| +++++++++. ..+||++--+-.+.++
T Consensus 148 ~~~~~~~~-~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvia~GGi~~~~d 203 (230)
T TIGR00007 148 EELAKRLE-ELGLEGIIYTDISRDGTLSGPNFELTKELVKA-----------------------VNVPVIASGGVSSIDD 203 (230)
T ss_pred HHHHHHHH-hCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 34445453 34577 77788854332 22 6777777752 3589999998899999
Q ss_pred HHHHHHcCCCEEEe
Q 002879 834 YEECLRSGMDGYVS 847 (871)
Q Consensus 834 ~~~~~~~G~d~yl~ 847 (871)
..++++.|+|+++.
T Consensus 204 i~~~~~~Gadgv~i 217 (230)
T TIGR00007 204 LIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999875
No 260
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=60.37 E-value=2.3e+02 Score=29.99 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHHhhcc
Q 002879 387 DPGRFRQIITNLMGNSIKF 405 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKf 405 (871)
...+|.+.|.+..+..+.+
T Consensus 191 ~~~~i~~~l~~~~~~~v~~ 209 (246)
T TIGR03321 191 QREQIRDTIRETLGPEIRL 209 (246)
T ss_pred HHHHHHHHHHHHHCCCeeE
Confidence 4566777777776555444
No 261
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=59.48 E-value=74 Score=31.67 Aligned_cols=118 Identities=12% Similarity=0.199 Sum_probs=72.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++.........+... ++.+. .+.+..++...+.. ..++.+++|......+ ...+...++... .
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~-~ 76 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTD---GFTFLKRIKQIQ-S 76 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHhC-C
Confidence 357899999999888888888877 57765 56777777766543 4578888876543322 223344444321 1
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...++++......... ......+...++.||+....+...++..+.
T Consensus 77 -~~~ii~ls~~~~~~~~-~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 77 -TVKVLFLSSKSECFYA-GRAIQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred -CCcEEEEECCCcHHHH-HHHHHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 1233333332221111 111123566789999999999998887664
No 262
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=59.47 E-value=74 Score=32.50 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=62.1
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCC-H-HHHHHHHHhhh
Q 002879 725 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD-G-FEATKIIREME 795 (871)
Q Consensus 725 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~md-G-~e~~~~IR~~~ 795 (871)
.+|++. |.+..-..++..+|+..||+|.... ..++-++.+. ...||+|.+-+.|+.-- . -+..+.+|+..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-KEKPLMLTGSALMTTTMYGQKDINDKLKEEG 163 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEccccccCHHHHHHHHHHHHHcC
Confidence 356554 5666777889999999999999643 3455566664 57899999998876442 2 23344444421
Q ss_pred ccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 796 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 796 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
....++|++ -+..... .-|.+.|+|.|-.
T Consensus 164 --------------------~~~~v~i~v-GG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 --------------------YRDSVKFMV-GGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred --------------------CCCCCEEEE-EChhcCH--HHHHHhCCcEEeC
Confidence 122455554 4433322 3567889999964
No 263
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=58.41 E-value=1.8e+02 Score=31.14 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=62.3
Q ss_pred EEEeC-CHHHHHHHHHHHHHcCCEE-EEEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhhccccccc
Q 002879 728 LIVDD-NNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 728 LvVdD-n~~n~~~l~~~L~~~g~~v-~~a~~g~eAl~~l~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
|++.+ .+.....+....+.+|..+ .++.+.+|+..... ..+|+|-.. ++.-.-| ++.+.++...-+
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~--~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p------ 209 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK--LGAPLIGINNRNLKTFEVD-LETTERLAPLIP------ 209 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEECCCCcccccCC-HHHHHHHHHhCC------
Confidence 44444 3445555556666788764 46778887766552 357877543 1122233 666777665211
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
...|+|+.++-...++..++.++|+|+++.
T Consensus 210 ---------------~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 210 ---------------SDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred ---------------CCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 135899999999999999999999999764
No 264
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=58.20 E-value=1e+02 Score=33.20 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=65.5
Q ss_pred HHHHHHHcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCC
Q 002879 740 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 817 (871)
Q Consensus 740 l~~~L~~~g~~--v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 817 (871)
++..|+.-... ..+.-....+.+.+. ...||.|++|++=-..|--++...||....
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a-~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~--------------------- 66 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAA-TSGYDWLLIDGEHAPNTIQDLYHQLQAIAP--------------------- 66 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHH-HcCCCEEEEccccCCCCHHHHHHHHHHHHh---------------------
Confidence 55555542221 222333455666664 345999999999988888888888887532
Q ss_pred CCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCH-HHHHHHHh
Q 002879 818 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEA-EQLYREVS 860 (871)
Q Consensus 818 ~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~-~~L~~~l~ 860 (871)
..++.++=....+.....+++++|+++.+.-=++- ++..+.++
T Consensus 67 ~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 67 YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 12344445566788999999999999999877654 44444443
No 265
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=58.08 E-value=56 Score=32.06 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=71.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|......+ ...++..++... ...
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~---~~~~~~~l~~~~--~~~ 76 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGID---GIELLRRLKARG--SPL 76 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCc---HHHHHHHHHhcC--CCC
Confidence 568999999998888889999999999988888887766543 3467777775443222 122344444322 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.++++............ ...+...++.||+....+...+...+.
T Consensus 77 ~ii~l~~~~~~~~~~~~-~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 77 PVIVMTGHGDVPLAVEA-MKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred CEEEEECCCCHHHHHHH-HHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 33333322211111111 112445678899998888887776654
No 266
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.99 E-value=27 Score=37.34 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccC------CCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 002879 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLY 856 (871)
Q Consensus 783 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~------~~~~~~~~~~~~G~d~yl~KP~~~~~L~ 856 (871)
+.++.++++|+. ...+|+++||=. ..+...++|.++|+|+.|.-.+..++..
T Consensus 75 ~~~~~~~~~r~~----------------------~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~ 132 (258)
T PRK13111 75 DVFELVREIREK----------------------DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAE 132 (258)
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 457788888842 246899999843 4456788999999999999877777666
Q ss_pred HHHhh
Q 002879 857 REVSR 861 (871)
Q Consensus 857 ~~l~~ 861 (871)
..+.+
T Consensus 133 ~~~~~ 137 (258)
T PRK13111 133 ELRAA 137 (258)
T ss_pred HHHHH
Confidence 55543
No 267
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=57.99 E-value=50 Score=35.74 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=51.9
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+.+-++|.+.+. ..+|+|++| .|+.-+=-++.+.||+.. ++ .++..++..
T Consensus 191 IeVEv~tleea~ea~~--~GaDiI~lD-n~~~e~l~~~v~~l~~~~----------------------~~-~~leasGGI 244 (277)
T TIGR01334 191 ITVEADTIEQALTVLQ--ASPDILQLD-KFTPQQLHHLHERLKFFD----------------------HI-PTLAAAGGI 244 (277)
T ss_pred EEEECCCHHHHHHHHH--cCcCEEEEC-CCCHHHHHHHHHHHhccC----------------------CC-EEEEEECCC
Confidence 4556789999999884 458999999 455555555555555311 12 368899999
Q ss_pred CHHHHHHHHHcCCCEEE
Q 002879 830 IQATYEECLRSGMDGYV 846 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl 846 (871)
..+...+..+.|+|-+.
T Consensus 245 ~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 245 NPENIADYIEAGIDLFI 261 (277)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 268
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=57.68 E-value=29 Score=35.75 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=42.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEE-EEcCHHHHHHHhCCC---CCccEEEEeCC
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQ 778 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eAl~~l~~~---~~~DlilmDi~ 778 (871)
+-+|.-+|-|+.+..+++..+++.|+ .|. ...+..+.+..+... ..||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 35899999999999999999999886 344 456777777765322 36999999985
No 269
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=57.34 E-value=1.2e+02 Score=32.39 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=61.1
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHH
Q 002879 754 VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833 (871)
Q Consensus 754 a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 833 (871)
......+.+++. ...||.|++|++=-.+|--++...||..+. ..++.++=....+...
T Consensus 19 ~~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~---------------------~g~~~~VRvp~~~~~~ 76 (249)
T TIGR03239 19 ALGNPITTEVLG-LAGFDWLLLDGEHAPNDVLTFIPQLMALKG---------------------SASAPVVRPPWNEPVI 76 (249)
T ss_pred cCCCcHHHHHHH-hcCCCEEEEecccCCCCHHHHHHHHHHHhh---------------------cCCCcEEECCCCCHHH
Confidence 344456667664 356999999999999998888888887532 2234444556678899
Q ss_pred HHHHHHcCCCEEEeCCC-CHHHHHHHHh
Q 002879 834 YEECLRSGMDGYVSKPF-EAEQLYREVS 860 (871)
Q Consensus 834 ~~~~~~~G~d~yl~KP~-~~~~L~~~l~ 860 (871)
..+++++|+++.+.-=+ +.++..+.++
T Consensus 77 i~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 77 IKRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HHHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 99999999999987655 4455555553
No 270
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=57.18 E-value=1.4e+02 Score=30.89 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHHcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCC-------CCCCCHHHHHHHHHhhhccccccccccccchhhh
Q 002879 742 AGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 812 (871)
Q Consensus 742 ~~L~~~g-~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 812 (871)
..+++.| ..+ ..+.+..++..... ..+|+|..... .+...+++.++++++.
T Consensus 116 ~~~~~~g~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~------------------ 175 (219)
T cd04729 116 KRIHEEYNCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA------------------ 175 (219)
T ss_pred HHHHHHhCCeEEEECCCHHHHHHHHH--cCCCEEEccCccccccccCCCCCCHHHHHHHHHh------------------
Confidence 3344444 443 34567778766653 45888754211 1223457888888862
Q ss_pred ccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 813 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 813 ~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
..+||++..+-.+.++..++++.|+|+.+.-
T Consensus 176 -----~~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 176 -----LGIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred -----cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 1589998887778999999999999998753
No 271
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=57.09 E-value=78 Score=39.08 Aligned_cols=111 Identities=8% Similarity=0.064 Sum_probs=75.4
Q ss_pred eCCHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhhcccccccccc
Q 002879 731 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 731 dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~g 805 (871)
|.+..-...+..+|+..|++|+.- .+.+++++... .+.+|+|.+...+... ..-++++.||+..
T Consensus 593 d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~-~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G---------- 661 (714)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV-ENDVHVVGVSSLAAGHKTLVPALIEALKKLG---------- 661 (714)
T ss_pred cchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH-HcCCCEEEEeccchhhHHHHHHHHHHHHhcC----------
Confidence 344555677889999999999743 35677777775 4678998876655432 2345566666521
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+++|+ +-+..-+++.+.+.++|+|+|+..=.+..+....+.+.+.
T Consensus 662 -----------~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 662 -----------REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred -----------CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 1134333 4454345556778899999999999999888888877653
No 272
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.17 E-value=71 Score=33.63 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=48.2
Q ss_pred HHHHHHhCCCCCccEEEEeCCCCCC-CH--HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHH
Q 002879 758 KKATELLMPPHQFDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 834 (871)
Q Consensus 758 ~eAl~~l~~~~~~DlilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~ 834 (871)
.+.++.+....--.+|++|+..-++ .| +++++++++. ..+||++--+-.+.++.
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~-----------------------~~ipvi~~GGi~s~edi 207 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-----------------------TTIPVIASGGIRHQQDI 207 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHHH
Confidence 4444444322224699999986554 33 5666777652 35899999999999999
Q ss_pred HHHHHcCCCEEEe
Q 002879 835 EECLRSGMDGYVS 847 (871)
Q Consensus 835 ~~~~~~G~d~yl~ 847 (871)
.++++.|+++.+.
T Consensus 208 ~~l~~~G~~~viv 220 (234)
T PRK13587 208 QRLASLNVHAAII 220 (234)
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999885
No 273
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=55.92 E-value=23 Score=42.14 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=32.5
Q ss_pred eEEEEEEecCCCCChhhHhhhcccccccCC------CCCCCCCcccccHH
Q 002879 474 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLS 517 (871)
Q Consensus 474 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~------s~~~~~~GtGLGLs 517 (871)
.+.|.|.|+|.|+..+++..+-++|+..+- ...+.||=-|=.|+
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeALa 98 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEALA 98 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhhh
Confidence 467999999999999999999988876532 24455665554444
No 274
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=55.59 E-value=75 Score=30.98 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=70.1
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
..++||++.........-+++-|+.|..+.+..+++...+.... ....+|...-. .....++..++.... ...
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~P--ayAvvDlkL~~---gsGL~~i~~lr~~~~--d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPP--AYAVVDLKLGD---GSGLAVIEALRERRA--DMR 83 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCC--ceEEEEeeecC---CCchHHHHHHHhcCC--cce
Confidence 57899999988888888999999999999999999988776543 33444433322 222334455554322 233
Q ss_pred EEEEeccCCc-cccCcCCCCCCCCceeecCCchHHHHHHHHHH
Q 002879 658 LFLLANSISS-SRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 699 (871)
Q Consensus 658 ~~ll~~~~~~-~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 699 (871)
++++ +...+ ..+.... -.|...++.||-....+..++.+.
T Consensus 84 ivvL-TGy~sIATAV~Av-KlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 84 IVVL-TGYASIATAVEAV-KLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEEE-ecchHHHHHHHHH-HhhhhhhcCCCCChHHHHHHHhhc
Confidence 3333 22221 1111110 113447899999998888877664
No 275
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.04 E-value=1.5e+02 Score=26.36 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=44.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEE------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCV------ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 794 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a------~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~ 794 (871)
+||||-..+.+...++..++++|+..... ......++... ...|+|++=. +.-+-.++..+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t---~~vsH~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFT---DYVSHNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEe---CCcChHHHHHHHHH
Confidence 48999998889999999999999998888 22222244332 3569887633 23456667777664
No 276
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.32 E-value=1.9e+02 Score=32.09 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=62.7
Q ss_pred eEEEEe----CCHHHHHHHHHHHHHcC-CEEEE--EcCHHHHHHHhCCCCCccEEEEeC-------CCC----CCC--HH
Q 002879 726 KILIVD----DNNVNLKVAAAGLKRYG-AAVVC--VERGKKATELLMPPHQFDACFMDI-------QMP----EMD--GF 785 (871)
Q Consensus 726 ~ILvVd----Dn~~n~~~l~~~L~~~g-~~v~~--a~~g~eAl~~l~~~~~~DlilmDi-------~MP----~md--G~ 785 (871)
.++++| ++...++.++.+=+++. ..|.. +.+.++|..+.. ..+|+|..-+ +-+ ... ++
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 577775 33334444544444554 44443 678888888763 4588876331 111 112 45
Q ss_pred HHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 786 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+++.+++. .++|||+--+-....+..+|+.+|+|.+..
T Consensus 191 ~ai~~~~~~-----------------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 191 AALRWCAKA-----------------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 566777642 258999999999999999999999997754
No 277
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=54.29 E-value=79 Score=33.23 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCC-H--HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHH
Q 002879 757 GKKATELLMPPHQFDACFMDIQMPEMD-G--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833 (871)
Q Consensus 757 g~eAl~~l~~~~~~DlilmDi~MP~md-G--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 833 (871)
..+.++.+.. ..=-++++|+..-++. | ++++++|.+. ..+||++--+-.+.++
T Consensus 148 ~~~~~~~~~~-~~~~li~~di~~~G~~~g~~~~~~~~i~~~-----------------------~~ipvi~~GGi~s~ed 203 (233)
T cd04723 148 PEELLRRLAK-WPEELIVLDIDRVGSGQGPDLELLERLAAR-----------------------ADIPVIAAGGVRSVED 203 (233)
T ss_pred HHHHHHHHHH-hCCeEEEEEcCccccCCCcCHHHHHHHHHh-----------------------cCCCEEEeCCCCCHHH
Confidence 4555666643 3225899999775432 2 5667777652 3589999999999999
Q ss_pred HHHHHHcCCCEEEe
Q 002879 834 YEECLRSGMDGYVS 847 (871)
Q Consensus 834 ~~~~~~~G~d~yl~ 847 (871)
..+++++|+++.+.
T Consensus 204 i~~l~~~G~~~viv 217 (233)
T cd04723 204 LELLKKLGASGALV 217 (233)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999874
No 278
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.84 E-value=1.9e+02 Score=29.29 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=60.2
Q ss_pred eEEEEeC--CHHHHHHHHHHHHHcCCEEE----EEcCHHHHHHHhCCCCCccEEEEeC-----CCCCCCHHHHHHHHHhh
Q 002879 726 KILIVDD--NNVNLKVAAAGLKRYGAAVV----CVERGKKATELLMPPHQFDACFMDI-----QMPEMDGFEATKIIREM 794 (871)
Q Consensus 726 ~ILvVdD--n~~n~~~l~~~L~~~g~~v~----~a~~g~eAl~~l~~~~~~DlilmDi-----~MP~mdG~e~~~~IR~~ 794 (871)
..+++.+ .+.....+....++.|..+. .+.+..++.+.+. ...|.|.... ......+.+.++++++.
T Consensus 79 d~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~--~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~ 156 (202)
T cd04726 79 DIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK--LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL 156 (202)
T ss_pred CEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH--CCCCEEEEcCcccccccCCCCCHHHHHHHHhh
Confidence 4455433 33233445566677787654 4557788877542 4678887742 11124566777777652
Q ss_pred hccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 795 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 795 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.++||++ ++....+...+++++|+|.++.
T Consensus 157 -----------------------~~~~i~~-~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 -----------------------LGVKVAV-AGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred -----------------------cCCCEEE-ECCcCHHHHHHHHhcCCCEEEE
Confidence 2467764 5556789999999999998864
No 279
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=53.80 E-value=22 Score=36.00 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=41.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 777 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi 777 (871)
++||++|...-.---+..+|+..|++|....|....++.+ ....||.|++.-
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~-~~~~pd~iviSP 53 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELI-EALKPDAIVISP 53 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHH-hhcCCCEEEEcC
Confidence 4799999999999999999999999999888874334444 245689999864
No 280
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=53.47 E-value=88 Score=28.64 Aligned_cols=33 Identities=33% Similarity=0.298 Sum_probs=29.8
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHH
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 610 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~ 610 (871)
|+|++|++..|+.-....|.-+|.+++.+++..
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~ 33 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD 33 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH
Confidence 589999999999999999999999999988644
No 281
>PLN02591 tryptophan synthase
Probab=53.04 E-value=36 Score=36.24 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCccEEEEccCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh
Q 002879 818 FHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREVSR 861 (871)
Q Consensus 818 ~~~pIIalTa~~------~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~ 861 (871)
.++|+|+||=.+ .+....+|.++|+|+.|.-.+..++......+
T Consensus 77 ~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~ 126 (250)
T PLN02591 77 LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAE 126 (250)
T ss_pred CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 358998888644 34567889999999999998888777655544
No 282
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=52.88 E-value=88 Score=26.60 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=47.1
Q ss_pred hHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHHHHHHH
Q 002879 282 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 361 (871)
Q Consensus 282 iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~v~~~~ 361 (871)
+.|-+|+-|..|.+++.+-.....+++.++.+..+......|.. +.+.|--+ + ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~-vh~~L~~~----~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIAL-VHEQLYQS----E----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcC----C----CCCeecHHHHHHHHHHHH
Confidence 57999999999999999876666666656655555554444332 33333221 1 124589999999888765
Q ss_pred H
Q 002879 362 S 362 (871)
Q Consensus 362 ~ 362 (871)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 283
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=52.55 E-value=1.9e+02 Score=29.83 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=52.5
Q ss_pred HHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCC
Q 002879 744 LKRYGAAVV-CVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 819 (871)
Q Consensus 744 L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~ 819 (871)
....|..+. .+.+-.++.+.. ...+|.+..- ..+. ..+++.++++++.- ...
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~--~~g~~~i~~t~~~~~~~-~~~~~~~~~l~~~~---------------------~~~ 172 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERAL--ALGAKIIGINNRDLKTF-EVDLNTTERLAPLI---------------------PKD 172 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHH--HcCCCEEEEeCCCcccc-CcCHHHHHHHHHhC---------------------CCC
Confidence 355787654 345555555544 2457777543 1111 13357777777521 125
Q ss_pred ccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 820 VPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 820 ~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+|+++..+-...++..+++++|+|+++.
T Consensus 173 ~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 173 VILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 7999999988999999999999999874
No 284
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=51.95 E-value=1.9 Score=50.79 Aligned_cols=51 Identities=33% Similarity=0.588 Sum_probs=31.7
Q ss_pred EEEEEecCCCCChhhHhh--------hcccccccC---CCCCCCCC-cccccHHHHHHHHHHc
Q 002879 476 IVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHG-GTGIGLSISKYLVGRM 526 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~--------iF~pF~q~~---~s~~~~~~-GtGLGLsI~k~lv~~~ 526 (871)
.|+|.|+|.|||-+..+. ||.-..... .......| =.|.|.|.|..|-+.+
T Consensus 69 sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 69 SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred eEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceE
Confidence 389999999999887443 554432211 11111223 3688999988877654
No 285
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.72 E-value=1.5e+02 Score=31.29 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCEEEEEcCH---HHHHHHhCCCCCccEEEEeCCCCCCC------HHHHHHHHHhhhccccccccccc
Q 002879 736 NLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMD------GFEATKIIREMEHNFNNRIRRGE 806 (871)
Q Consensus 736 n~~~l~~~L~~~g~~v~~a~~g---~eAl~~l~~~~~~DlilmDi~MP~md------G~e~~~~IR~~~~~~~~~~~~g~ 806 (871)
....+...+++.|..+..+-+. .+.++.+. ....++++| -.+|+-. -.+.++++|++-
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~----------- 183 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV----------- 183 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc-----------
Confidence 4456777888999876665444 34455443 244678888 5566632 234556666531
Q ss_pred cchhhhccCCCCCccEEEEccCC-CHHHHHHHHHcCCCEEEeCC
Q 002879 807 VSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKP 849 (871)
Q Consensus 807 ~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~~G~d~yl~KP 849 (871)
...||+ +=... ..++..++.++|+|+++.--
T Consensus 184 -----------~~~~i~-v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 184 -----------GNKYLV-VGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred -----------CCCCEE-EeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 124654 44444 78889999999999998764
No 286
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.81 E-value=1.5e+02 Score=27.86 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 225 LAISTSIGILVIASLVGHIFQATVNR 250 (871)
Q Consensus 225 ~~~~~~~~~l~~~~l~~~~~~~~~~r 250 (871)
..|...+..+++.+++|+++.+...+
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 33444444455555566655544333
No 287
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=49.17 E-value=59 Score=32.95 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=40.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC--E-EEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA--A-VVCVERGKKATELLMPPHQFDACFMDI 777 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~--~-v~~a~~g~eAl~~l~~~~~~DlilmDi 777 (871)
.++++||-|..-..+++.-++..|. . .....|...++..+.....||+||+|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 5899999999999999999888772 2 334455557777765444599999996
No 288
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=49.16 E-value=16 Score=47.79 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=31.6
Q ss_pred EEEEEecCCCCChhhHh--------hhcccccccC---CCCCCCCCc-ccccHHHHHHHHHHc
Q 002879 476 IVSVEDTGQGIPLEAQS--------RIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRM 526 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv~~~ 526 (871)
.|+|.|+|.|||-+..+ -||.-..... ....+..|| .|.|.+.|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 48999999999986432 2454433221 121222344 699999888776654
No 289
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.15 E-value=1.6e+02 Score=31.90 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHH---cC---CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKR---YG---AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 799 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~---~g---~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 799 (871)
.|||-|++-... .+...+++ .. -..+.+++-+||.+.+. ...|+|.+|=..|+ +=-++.+.+++..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~--agaDiI~LDn~~~e-~l~~~v~~l~~~~---- 227 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK--AGADIIMLDNMTPE-EIREVIEALKREG---- 227 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH--cCcCEEEECCCCHH-HHHHHHHHHHhcC----
Confidence 477777775433 44444432 22 24556889999999884 45899999965443 2222333333210
Q ss_pred ccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 800 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 800 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
..++ ..+..++....+...+..+.|+|.+.
T Consensus 228 ----------------~~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 228 ----------------LRER-VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred ----------------cCCC-EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 0122 36778999999999999999998765
No 290
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=49.10 E-value=49 Score=35.37 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCC------HHHHHHHHHcCCCEEEeCCCCHHHHH
Q 002879 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLY 856 (871)
Q Consensus 783 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~------~~~~~~~~~~G~d~yl~KP~~~~~L~ 856 (871)
+.++.++.||+. ...+|++.|+-... +....+|.++|+|+.+.-....++..
T Consensus 73 ~~~~~v~~ir~~----------------------~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~ 130 (256)
T TIGR00262 73 KCFELLKKVRQK----------------------HPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESG 130 (256)
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHH
Confidence 457778888852 13578888887655 67788999999999998877777665
Q ss_pred HHHhh
Q 002879 857 REVSR 861 (871)
Q Consensus 857 ~~l~~ 861 (871)
..+.+
T Consensus 131 ~~~~~ 135 (256)
T TIGR00262 131 DLVEA 135 (256)
T ss_pred HHHHH
Confidence 55543
No 291
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=48.92 E-value=1.4e+02 Score=27.88 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEc--CHHHHHHHhCCCCCccEEEEeCCCCCC-CHHHHHHHHHhh
Q 002879 735 VNLKVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEM-DGFEATKIIREM 794 (871)
Q Consensus 735 ~n~~~l~~~L~~~g~~v~~a~--~g~eAl~~l~~~~~~DlilmDi~MP~m-dG~e~~~~IR~~ 794 (871)
.....+..+|++.|+.+.... .-++.++.+.....||+|.+.+.-+.+ ...++++.||+.
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~ 65 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV 65 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHH
Confidence 345678899999998776543 345556666432679999999855544 345677788764
No 292
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.68 E-value=2e+02 Score=34.42 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
+..+.++|.|+...+.+ ++.|+.+.+.+-. .+.++.. .-++.|.++.-..=...+ ..++..+|+.
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a-~i~~a~~viv~~~~~~~~-~~iv~~~~~~-------- 505 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLA-HLDCARWLLLTIPNGYEA-GEIVASAREK-------- 505 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhc-CccccCEEEEEcCChHHH-HHHHHHHHHH--------
Confidence 45688999887654333 4568877776533 3445544 235688777654321111 1244555653
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
+++.+||+-+. +++..+...++|+|..+. | .+.+.+.+.+.+..
T Consensus 506 --------------~~~~~iiar~~--~~~~~~~l~~~Gad~vv~-p--~~~~a~~i~~~l~~ 549 (558)
T PRK10669 506 --------------RPDIEIIARAH--YDDEVAYITERGANQVVM-G--EREIARTMLELLET 549 (558)
T ss_pred --------------CCCCeEEEEEC--CHHHHHHHHHcCCCEEEC-h--HHHHHHHHHHHhcC
Confidence 24578888764 456666678899997773 2 34555556555543
No 293
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=48.17 E-value=2e+02 Score=30.60 Aligned_cols=96 Identities=21% Similarity=0.170 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH-----HHHHHHHhhhccccccccccccchhh
Q 002879 739 VAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIEA 811 (871)
Q Consensus 739 ~l~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~-----e~~~~IR~~~~~~~~~~~~g~~~~~~ 811 (871)
-+.+.|-+.||.|.. ..|..-|-++.. -. -.++|=+--|...|. ..++.|++
T Consensus 128 ~Aae~Lv~eGF~VlPY~~~D~v~a~rLed-~G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e------------------ 186 (267)
T CHL00162 128 KAAEFLVKKGFTVLPYINADPMLAKHLED-IG--CATVMPLGSPIGSGQGLQNLLNLQIIIE------------------ 186 (267)
T ss_pred HHHHHHHHCCCEEeecCCCCHHHHHHHHH-cC--CeEEeeccCcccCCCCCCCHHHHHHHHH------------------
Confidence 345667778999885 445555555432 22 457788888876653 45666665
Q ss_pred hccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHh
Q 002879 812 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVS 860 (871)
Q Consensus 812 ~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl-----~KP~~~~~L~~~l~ 860 (871)
...+|||.=.+-...++..++++.|+|+.+ .|--++.++..+++
T Consensus 187 -----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~ 235 (267)
T CHL00162 187 -----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMK 235 (267)
T ss_pred -----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHH
Confidence 346899988888999999999999999985 46667777776665
No 294
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=47.94 E-value=98 Score=33.13 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=63.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEE-----EcCHHHHHHHhCCCCCccEEEEeCCC---------CCCCH------
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVC-----VERGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 784 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~-----a~~g~eAl~~l~~~~~~DlilmDi~M---------P~mdG------ 784 (871)
-|||=+|-++.-.+..-..-++.|..+.- -+-.+.-.+++ +.+.||++++==+= -.++-
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 183 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI-EEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKY 183 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH-HHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHH
Confidence 48999999999999888888888866552 23334445555 46889998763221 01111
Q ss_pred -HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCC
Q 002879 785 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843 (871)
Q Consensus 785 -~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d 843 (871)
.|+.+..|+.+++. + =+++-|.+-+...+..++|||+
T Consensus 184 FVeaVk~aR~y~~~~--------------------D--~LVIFAGACQS~yEall~AGAN 221 (283)
T TIGR02855 184 FVETVREARKYVPSL--------------------D--QLVIFAGACQSHFESLIRAGAN 221 (283)
T ss_pred HHHHHHHHHhcCCCc--------------------c--cEEEEcchhHHHHHHHHHcCcc
Confidence 35666777665432 1 1334466788999999999997
No 295
>PLN03128 DNA topoisomerase 2; Provisional
Probab=47.46 E-value=27 Score=45.17 Aligned_cols=50 Identities=28% Similarity=0.552 Sum_probs=29.7
Q ss_pred EEEEEecCCCCChhhHh--------hhccccccc---CCCCCCCCCc-ccccHHHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 525 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~ 525 (871)
.|+|.|+|.|||-+..+ -||.-.... |....+..|| .|.|.+.|.-+-+.
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~ 148 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE 148 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCe
Confidence 48999999999976432 234333221 1111222344 69999888776554
No 296
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=47.35 E-value=1.2e+02 Score=30.53 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=55.5
Q ss_pred HHHHcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCcc
Q 002879 743 GLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 821 (871)
Q Consensus 743 ~L~~~g~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~p 821 (871)
..+++|.. +..+.+..|+.+... ..+|+|-++- ++.. |.+.++.++.. .+++|
T Consensus 92 ~~~~~~~~~i~gv~t~~e~~~A~~--~Gad~i~~~p-~~~~-g~~~~~~l~~~----------------------~~~~p 145 (190)
T cd00452 92 AANRAGIPLLPGVATPTEIMQALE--LGADIVKLFP-AEAV-GPAYIKALKGP----------------------FPQVR 145 (190)
T ss_pred HHHHcCCcEECCcCCHHHHHHHHH--CCCCEEEEcC-Cccc-CHHHHHHHHhh----------------------CCCCe
Confidence 33444543 335668888888763 4689998864 4444 99999998752 23578
Q ss_pred EEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 822 ILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 822 IIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
+++.-+ ...+...+++++|++....-
T Consensus 146 ~~a~GG-I~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 146 FMPTGG-VSLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred EEEeCC-CCHHHHHHHHHCCCEEEEEc
Confidence 887655 58899999999999887543
No 297
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=46.45 E-value=1.2e+02 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHhh
Q 002879 828 DVIQATYEECLRSGMDGYVSKPF--EAEQLYREVSR 861 (871)
Q Consensus 828 ~~~~~~~~~~~~~G~d~yl~KP~--~~~~L~~~l~~ 861 (871)
....+....|+++|.+=|+.||+ +.+++.+.++.
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~ 108 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEA 108 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHH
Confidence 44456778899999999999998 77777666543
No 298
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=46.36 E-value=1.6e+02 Score=31.03 Aligned_cols=84 Identities=21% Similarity=0.143 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH-----HHHHHHHhhhccccccccccccchh
Q 002879 738 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 738 ~~l~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~-----e~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
-...+.|-+.||.|.. ..|..-|-++.. -. -.++|=+--|...|. ..++.|++.
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~D~v~akrL~d-~G--caavMPlgsPIGSg~Gi~n~~~l~~i~~~---------------- 173 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYCTDDPVLAKRLED-AG--CAAVMPLGSPIGSGRGIQNPYNLRIIIER---------------- 173 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HHHHHHHHH-TT---SEBEEBSSSTTT---SSTHHHHHHHHHH----------------
T ss_pred HHHHHHHHHCCCEEeecCCCCHHHHHHHHH-CC--CCEEEecccccccCcCCCCHHHHHHHHHh----------------
Confidence 3456677789999884 455555555442 12 246788888887763 466677652
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+|||+=.+-....+..++++.|+|+.|.
T Consensus 174 -------~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 174 -------ADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp -------GSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred -------cCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 268999988888999999999999999985
No 299
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=46.25 E-value=1.5e+02 Score=36.03 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHH-HHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK-ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~e-Al~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
+..+.++|.|+...+. +++.|+.+...+-.+. .++.. .-++.|+++.-..=+ .+-..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~----~~~~g~~v~~GDat~~~~L~~a-gi~~A~~vv~~~~d~-~~n~~i~~~~r~~-------- 488 (601)
T PRK03659 423 KMRITVLERDISAVNL----MRKYGYKVYYGDATQLELLRAA-GAEKAEAIVITCNEP-EDTMKIVELCQQH-------- 488 (601)
T ss_pred CCCEEEEECCHHHHHH----HHhCCCeEEEeeCCCHHHHHhc-CCccCCEEEEEeCCH-HHHHHHHHHHHHH--------
Confidence 4578999999875543 3457888877664443 34444 234678887765432 2234566667763
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
.++++||+-+. +++..++..++|+|..+.-
T Consensus 489 --------------~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 489 --------------FPHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred --------------CCCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 35678888765 4567778889999988754
No 300
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=45.97 E-value=56 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.9
Q ss_pred CccEEEEccCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Q 002879 819 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVS 860 (871)
Q Consensus 819 ~~pIIalTa~~~------~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~ 860 (871)
.+|+++|+-... +....+|.++|+|+.+.-....+++...+.
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 578888887443 667888999999999985444455444443
No 301
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.33 E-value=91 Score=25.40 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 002879 278 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 325 (871)
Q Consensus 278 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~ 325 (871)
.+...-||+.+=|+.|.|++++ ...++..+|++.+....+....
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999885 2234456777776666555533
No 302
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=45.25 E-value=1.3e+02 Score=22.66 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 224 LLAISTSIGILVIASLVGHIFQATVNRIA 252 (871)
Q Consensus 224 ~~~~~~~~~~l~~~~l~~~~~~~~~~r~~ 252 (871)
+..+..++.++.+...+|..++..+..++
T Consensus 5 lt~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 5 LTTIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444445555555555443
No 303
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=45.08 E-value=1.5e+02 Score=31.87 Aligned_cols=96 Identities=24% Similarity=0.301 Sum_probs=63.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEE--c---CHHHHHHHhCCCCCccEEEEeCCC---------CCCCH------
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCV--E---RGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 784 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a--~---~g~eAl~~l~~~~~~DlilmDi~M---------P~mdG------ 784 (871)
-|||=+|-++.-.+..-..-+++|..+... . -...-.+++ +.+.||++++==+= -.++.
T Consensus 106 GkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 184 (287)
T PF05582_consen 106 GKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL-EEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKY 184 (287)
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH-HHcCCCEEEEeCchhhhcCCCChhhhhhhhccHH
Confidence 489999999999998888888888766532 2 223334455 46889998763211 01111
Q ss_pred -HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCC
Q 002879 785 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 843 (871)
Q Consensus 785 -~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d 843 (871)
.|+.+..|+.+++. +- +++-|.+-+...+..++||||
T Consensus 185 FVeaV~~aR~~ep~~--------------------D~--LVIfAGACQS~fEall~AGAN 222 (287)
T PF05582_consen 185 FVEAVKEARKYEPNL--------------------DD--LVIFAGACQSHFEALLEAGAN 222 (287)
T ss_pred HHHHHHHHHhcCCCc--------------------cc--EEEEcchhHHHHHHHHHcCcc
Confidence 35777777766532 11 233456788999999999997
No 304
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.92 E-value=88 Score=34.07 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=49.1
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+++-+||.+.+. ...|+|.+| +|+.-+=-++.+.+|+. .++ ..+..++..
T Consensus 202 IeVEv~tl~ea~eal~--~gaDiI~LD-nm~~e~vk~av~~~~~~----------------------~~~-v~ieaSGGI 255 (289)
T PRK07896 202 CEVEVDSLEQLDEVLA--EGAELVLLD-NFPVWQTQEAVQRRDAR----------------------APT-VLLESSGGL 255 (289)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEeC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 4567889999999884 458999999 44422222333333321 123 367789999
Q ss_pred CHHHHHHHHHcCCCEEE
Q 002879 830 IQATYEECLRSGMDGYV 846 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl 846 (871)
..+...+.-+.|+|.+.
T Consensus 256 ~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 256 TLDTAAAYAETGVDYLA 272 (289)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998664
No 305
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=44.77 E-value=1.8e+02 Score=28.39 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=69.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++++++..+......+..++ +. +..+.+...++..... ..++.+++|......+ ...+...+++..
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---~~~~~~~l~~~~-- 75 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMN---GLDVIPQLHQRW-- 75 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHC--
Confidence 4678999999999888888888764 55 3467777777765443 3467777775543222 122344444322
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
....++++............ ...+...++.||.....+...+...+.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 76 PAMNILVLTARQEEHMASRT-LAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred CCCcEEEEeCCCCHHHHHHH-HHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 12334444332221111111 112556789999999999888887653
No 306
>PRK10651 transcriptional regulator NarL; Provisional
Probab=44.68 E-value=1.9e+02 Score=28.73 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=71.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++..+......+... ++. +..+.+..+++..+.. ..++.+++|....... .......++....
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~---~~~~~~~l~~~~~- 79 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMN---GLETLDKLREKSL- 79 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCc---HHHHHHHHHHhCC-
Confidence 357899999998888888888765 454 4467888888877654 3467788776543322 1223444443221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...++++............ -..+...++.||+....+...+..++.
T Consensus 80 -~~~vi~l~~~~~~~~~~~~-~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 80 -SGRIVVFSVSNHEEDVVTA-LKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred -CCcEEEEeCCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 2233333322221111111 112456789999999999999888764
No 307
>PRK10742 putative methyltransferase; Provisional
Probab=44.62 E-value=2.9e+02 Score=29.45 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=62.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHc------CC----EEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHH-HHHHH
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRY------GA----AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFE-ATKII 791 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~------g~----~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e-~~~~I 791 (871)
|.+|..||-|+....+++.-|++. +. .+. ...|..+.+... ...||+|++|-+-|.-.--. .-+.+
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~fDVVYlDPMfp~~~ksa~vkk~m 187 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQVVYLDPMFPHKQKSALVKKEM 187 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCCcEEEECCCCCCCccccchhhhH
Confidence 557999999999999999999984 21 222 245666666654 23699999999999754211 22333
Q ss_pred HhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 792 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 792 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
|-+. -++-......+..+.|++.--.-.+.|
T Consensus 188 r~~~--------------------------~l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 188 RVFQ--------------------------SLVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred HHHH--------------------------HhcCCCCChHHHHHHHHHhcCceEEEe
Confidence 3321 012233445667777777766666666
No 308
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=44.47 E-value=31 Score=40.34 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.1
Q ss_pred EEEEEecCCCCChhhHhhhccccccc
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQV 501 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~ 501 (871)
.+.|.|+|-||-.++++-+-++|.+.
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhh
Confidence 47899999999999999999999653
No 309
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=44.12 E-value=2.6e+02 Score=29.05 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=53.6
Q ss_pred HHHHHHHcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhhccccccccccccchhh
Q 002879 740 AAAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEA 811 (871)
Q Consensus 740 l~~~L~~~g~~v~~-a~~g~eAl~~l~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~ 811 (871)
+...+++.+..+.. +.+..++..... ...|.|..+-.-++ ...++.++++|+.
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~----------------- 154 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA----------------- 154 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-----------------
Confidence 33445556655443 345555544432 45788877542111 2456778887752
Q ss_pred hccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 812 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 812 ~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
..+||++.-+-...++..+++++|+|+.+.-
T Consensus 155 ------~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 ------VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred ------hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 2479998777666789999999999988754
No 310
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.95 E-value=2.4e+02 Score=32.53 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=61.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHH----HcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhhcc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLK----RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHN 797 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~----~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~~~ 797 (871)
|++|++++-+. .|......|+ ..|..+..+.+..++.+.+. ...+|+||.|. |+..- .+.++.++++...
T Consensus 252 G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 252 GKSVSLYTTDN-YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGSELILIDT--AGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred CCeEEEecccc-hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCCCEEEEeC--CCCCccCHHHHHHHHHHHHh
Confidence 56898888776 3333334444 44666666666666666664 36799999996 33321 2333444432110
Q ss_pred ccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHH----cCCCEEEeCCCC
Q 002879 798 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPFE 851 (871)
Q Consensus 798 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----~G~d~yl~KP~~ 851 (871)
. +...+.-.+++++|....++.....+ .|.++.|.==+|
T Consensus 328 ~---------------~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLD 370 (432)
T PRK12724 328 F---------------GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370 (432)
T ss_pred h---------------cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEccc
Confidence 0 00112345788888887766666554 577777643333
No 311
>PRK00811 spermidine synthase; Provisional
Probab=43.37 E-value=1.1e+02 Score=33.18 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=41.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC------CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG------AAV-VCVERGKKATELLMPPHQFDACFMDIQMPE 781 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g------~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~ 781 (871)
.+|.+||=++...+.++..+...+ -.+ ....|+.+-+.. ....||+|++|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCCCCC
Confidence 489999999999999999887532 123 346777776654 2467999999986664
No 312
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=43.25 E-value=2e+02 Score=31.71 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=59.0
Q ss_pred HHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC---C--CCCCHHHHHHHHHhhhccccccccccccchhhhc
Q 002879 740 AAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ---M--PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 813 (871)
Q Consensus 740 l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~---M--P~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~ 813 (871)
+-..++..|..|. .+.+.++|..... ...|.|+..-. . ....-+++++++++.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~--~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~------------------- 159 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK--AGADAVIAEGMESGGHIGELTTMALVPQVVDA------------------- 159 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH--cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH-------------------
Confidence 5566777787654 4677888776653 45899887432 1 122347778888752
Q ss_pred cCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 814 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 814 ~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+|||+--+-.+.++...|+..|+|+...
T Consensus 160 ----~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 160 ----VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred ----hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 248999988888889999999999998764
No 313
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=43.00 E-value=2.5e+02 Score=29.79 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=58.6
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHH
Q 002879 754 VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833 (871)
Q Consensus 754 a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 833 (871)
.......++++. ...||.|+.|++=-.+|--++...|+..+. .....++=....+..+
T Consensus 19 ~~~~p~~~e~~~-~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~---------------------~g~~~~VRv~~~~~~~ 76 (249)
T TIGR02311 19 GLADPYAAEICA-GAGFDWLLIDGEHAPNDVRTILSQLQALAP---------------------YPSSPVVRPAIGDPVL 76 (249)
T ss_pred eCCCcHHHHHHH-hcCCCEEEEeccCCCCCHHHHHHHHHHHHh---------------------cCCCcEEECCCCCHHH
Confidence 334455566663 356999999999888888888888876421 1123344445556778
Q ss_pred HHHHHHcCCCEEEe-CCCCHHHHHHHHhh
Q 002879 834 YEECLRSGMDGYVS-KPFEAEQLYREVSR 861 (871)
Q Consensus 834 ~~~~~~~G~d~yl~-KP~~~~~L~~~l~~ 861 (871)
..+++++|+++.+. |--+.++..+.++.
T Consensus 77 i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 77 IKQLLDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred HHHHhCCCCCEEEecCcCCHHHHHHHHHH
Confidence 99999999998865 44566777666654
No 314
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=42.68 E-value=1.7e+02 Score=29.40 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=48.1
Q ss_pred EEEcCHHHHHHHhCCCCCccEEEEeCCCCC--------CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEE
Q 002879 752 VCVERGKKATELLMPPHQFDACFMDIQMPE--------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 823 (871)
Q Consensus 752 ~~a~~g~eAl~~l~~~~~~DlilmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pII 823 (871)
..+.+..++.+.. ....|+|+.+--.|. ..|.+..+.+.+. ...+||+
T Consensus 101 ~s~h~~~e~~~a~--~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~----------------------~~~~pv~ 156 (196)
T TIGR00693 101 VSTHNLEELAEAE--AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT----------------------SIDIPIV 156 (196)
T ss_pred EeCCCHHHHHHHh--HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------cCCCCEE
Confidence 3455666666544 246899987654442 2478888888752 1247888
Q ss_pred EEccCCCHHHHHHHHHcCCCEEEe
Q 002879 824 AMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 824 alTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
++-+ ...+...++++.|++++..
T Consensus 157 a~GG-I~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 157 AIGG-ITLENAAEVLAAGADGVAV 179 (196)
T ss_pred EECC-cCHHHHHHHHHcCCCEEEE
Confidence 7754 4678888999999998753
No 315
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=42.67 E-value=2.3e+02 Score=29.43 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=44.6
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC---CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHH
Q 002879 758 KKATELLMPPHQFD-ACFMDIQMPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833 (871)
Q Consensus 758 ~eAl~~l~~~~~~D-lilmDi~MP~m---dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 833 (871)
.+.++.+. ....| ++++|+..-++ --+++++++++. ..+||++--+-.+.++
T Consensus 149 ~~~~~~~~-~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvi~~GGi~~~~d 204 (234)
T cd04732 149 EELAKRFE-ELGVKAIIYTDISRDGTLSGPNFELYKELAAA-----------------------TGIPVIASGGVSSLDD 204 (234)
T ss_pred HHHHHHHH-HcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----------------------cCCCEEEecCCCCHHH
Confidence 34444443 23344 56777744222 226777777752 2589999998888999
Q ss_pred HHHHHHcCCCEEEe
Q 002879 834 YEECLRSGMDGYVS 847 (871)
Q Consensus 834 ~~~~~~~G~d~yl~ 847 (871)
..++++.|+++.+.
T Consensus 205 i~~~~~~Ga~gv~v 218 (234)
T cd04732 205 IKALKELGVAGVIV 218 (234)
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999764
No 316
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.64 E-value=1.9e+02 Score=31.34 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=48.6
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+++-+++.+.+. ..+|+|++|= |+.-+=-++.+.++. ..+|..++..
T Consensus 196 IeVEv~slee~~ea~~--~gaDiImLDn-~s~e~l~~av~~~~~--------------------------~~~leaSGgI 246 (281)
T PRK06543 196 VEVEVDRLDQIEPVLA--AGVDTIMLDN-FSLDDLREGVELVDG--------------------------RAIVEASGNV 246 (281)
T ss_pred EEEEeCCHHHHHHHHh--cCCCEEEECC-CCHHHHHHHHHHhCC--------------------------CeEEEEECCC
Confidence 3467899999999874 4689999995 333333334443331 1268889999
Q ss_pred CHHHHHHHHHcCCCEEE
Q 002879 830 IQATYEECLRSGMDGYV 846 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl 846 (871)
..+...+.-+.|+|-..
T Consensus 247 ~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 247 NLNTVGAIASTGVDVIS 263 (281)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998543
No 317
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=42.50 E-value=1.9e+02 Score=28.65 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=46.2
Q ss_pred cCHHHHHHHhCCCCCccEEEEeCCCCC--------CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEc
Q 002879 755 ERGKKATELLMPPHQFDACFMDIQMPE--------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 826 (871)
Q Consensus 755 ~~g~eAl~~l~~~~~~DlilmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 826 (871)
.+..++.+... ..+|.|+.+---|. -.|.+..+++++. .++||++.-
T Consensus 103 ~t~~~~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~pv~a~G 157 (196)
T cd00564 103 HSLEEALRAEE--LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-----------------------VEIPVVAIG 157 (196)
T ss_pred CCHHHHHHHhh--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----------------------CCCCEEEEC
Confidence 45566666542 35899987643332 3456777777752 257898876
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 002879 827 ADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 827 a~~~~~~~~~~~~~G~d~yl~K 848 (871)
+- ..+...++.++|++++..=
T Consensus 158 Gi-~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 158 GI-TPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CC-CHHHHHHHHHcCCCEEEEe
Confidence 54 5788999999999988543
No 318
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=42.27 E-value=1.3e+02 Score=32.44 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=58.1
Q ss_pred EEEEeCCHHHHHH-HHHHHHH----cCCE---EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccc
Q 002879 727 ILIVDDNNVNLKV-AAAGLKR----YGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 798 (871)
Q Consensus 727 ILvVdDn~~n~~~-l~~~L~~----~g~~---v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~ 798 (871)
||| =||....-. +...+++ .++. -+.+++-+|+.+++. ..+|+|++|-+-| -.=-++.+.+.
T Consensus 161 vli-KDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~--agaDiImLDNm~~-e~~~~av~~l~------ 230 (280)
T COG0157 161 VLI-KDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE--AGADIIMLDNMSP-EELKEAVKLLG------ 230 (280)
T ss_pred EEe-hhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH--cCCCEEEecCCCH-HHHHHHHHHhc------
Confidence 554 455544433 5555553 3542 346899999999984 4699999995433 22222232221
Q ss_pred cccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEE
Q 002879 799 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 845 (871)
Q Consensus 799 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~y 845 (871)
...-.++-.|+....+...+.-+.|+|-+
T Consensus 231 ------------------~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 231 ------------------LAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred ------------------cCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 01134778999999999999999999844
No 319
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.03 E-value=3.6e+02 Score=26.72 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=73.0
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHHH
Q 002879 278 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 357 (871)
Q Consensus 278 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~v 357 (871)
+.+.+.|+|=.|..+|..-+++|.+..-+ .+-++.|..|+..+. +.|.|+|+--|.---.-..||-.+.=.-+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~ad---dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGAD---DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCcc---HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 45678999999999999999999887655 345666677766554 46789998766543333456655543333
Q ss_pred HHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCe-EEEEE
Q 002879 358 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTV 415 (871)
Q Consensus 358 ~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-I~v~v 415 (871)
.+.|. .+| -++....+. .+ ..+.+. +.+.||+-=|--.-+.|+ +.+++
T Consensus 91 ~~~~a---~ek-pe~~W~g~r----~~-~~Kn~v-kllLNl~lia~~aiPrGG~~~vtl 139 (214)
T COG5385 91 QDFFA---NEK-PELTWNGPR----AI-LPKNRV-KLLLNLFLIAYGAIPRGGSLVVTL 139 (214)
T ss_pred HHHHh---ccC-CcccccCCh----hh-cCcchH-HHHHHHHHHHcccCCCCCeeEEEe
Confidence 33332 233 344433222 11 133343 467788877766666654 44444
No 320
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=41.27 E-value=1.3e+02 Score=27.58 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=42.9
Q ss_pred eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCC-HHHHHHHHHh
Q 002879 731 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD-GFEATKIIRE 793 (871)
Q Consensus 731 dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~md-G~e~~~~IR~ 793 (871)
|-++.....+..+|++.|+++.... .-.+.++.+. ..+||+|.+.+.+.... .++.++++++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~-~~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK-EEDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH-HcCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 5566778889999999999988653 3344455553 46799999998775532 3444555554
No 321
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=41.03 E-value=2.9e+02 Score=28.30 Aligned_cols=118 Identities=7% Similarity=0.025 Sum_probs=69.1
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCc---EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~---~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.++++|+++..+...+..|...+. .+..+++..+++..+.. ..++.+++|.+.+....+. ......+++..+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g-~~~i~~i~~~~p-- 76 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASN-SQRIKQIINQHP-- 76 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCCh-HHHHHHHHHHCC--
Confidence 578999999999999999987653 34567888888876643 3468999995421111122 234555554322
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..+++++..............+ ....++.|+.....+..+++.+..
T Consensus 77 ~~~iivlt~~~~~~~~~~~~~~-~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 77 NTLFIVFMAIANIHFDEYLLVR-KNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred CCeEEEEECCCchhHHHHHHHH-hhceeeeccCCHHHHHHHHHHHHc
Confidence 2455555433221110000000 001256899999999999888764
No 322
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=41.00 E-value=1.7e+02 Score=35.62 Aligned_cols=93 Identities=15% Similarity=0.257 Sum_probs=60.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHH-HHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK-ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~e-Al~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
+..+.++|.|+...+.+ ++.|+.+...+-.+. .++.. .-++.|+++.-..=++. -..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~a-gi~~A~~vvv~~~d~~~-n~~i~~~ar~~-------- 488 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDPQT-SLQLVELVKEH-------- 488 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhc-CCCcCCEEEEEeCCHHH-HHHHHHHHHHh--------
Confidence 45688999998765444 446888776654333 34433 23468888876643332 35566677764
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
.++++|++-+. +.+...+..++|+|..+
T Consensus 489 --------------~p~~~iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 --------------FPHLQIIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred --------------CCCCeEEEEEC--CHHHHHHHHHCCCCEEe
Confidence 35678888764 45667788899999764
No 323
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=40.92 E-value=99 Score=32.20 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=46.4
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHH
Q 002879 758 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 833 (871)
Q Consensus 758 ~eAl~~l~~~~~~D-lilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 833 (871)
.+..+.+. ...+| ++++|+..-++ .| ++.++++++. ..+|||+-.+-.+.++
T Consensus 149 ~e~~~~~~-~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----------------------~~ipvia~GGi~~~~d 204 (233)
T PRK00748 149 EDLAKRFE-DAGVKAIIYTDISRDGTLSGPNVEATRELAAA-----------------------VPIPVIASGGVSSLDD 204 (233)
T ss_pred HHHHHHHH-hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 34444442 23455 78887754322 34 6778888752 2489999998899999
Q ss_pred HHHHHHcC-CCEEEe
Q 002879 834 YEECLRSG-MDGYVS 847 (871)
Q Consensus 834 ~~~~~~~G-~d~yl~ 847 (871)
..++++.| +++.+.
T Consensus 205 i~~~~~~g~~~gv~v 219 (233)
T PRK00748 205 IKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHcCCccEEEE
Confidence 99999998 999875
No 324
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.91 E-value=95 Score=33.81 Aligned_cols=70 Identities=23% Similarity=0.210 Sum_probs=46.0
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCC
Q 002879 751 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 830 (871)
Q Consensus 751 v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 830 (871)
-+.+.|.+||.+.+. ...|+|.+|- |..-+=-++.+.+|+. .+++| +..++...
T Consensus 200 ~VEv~tleea~eA~~--~GaD~I~LDn-~~~e~l~~av~~~~~~----------------------~~~i~-leAsGGIt 253 (288)
T PRK07428 200 EVETETLEQVQEALE--YGADIIMLDN-MPVDLMQQAVQLIRQQ----------------------NPRVK-IEASGNIT 253 (288)
T ss_pred EEECCCHHHHHHHHH--cCCCEEEECC-CCHHHHHHHHHHHHhc----------------------CCCeE-EEEECCCC
Confidence 345789999999884 4689999993 3222222223333321 23455 45577788
Q ss_pred HHHHHHHHHcCCCEEE
Q 002879 831 QATYEECLRSGMDGYV 846 (871)
Q Consensus 831 ~~~~~~~~~~G~d~yl 846 (871)
.+...+..+.|+|...
T Consensus 254 ~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 254 LETIRAVAETGVDYIS 269 (288)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 9999999999999764
No 325
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.66 E-value=2.1e+02 Score=30.86 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=48.7
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+++-+||.+.+. ..+|+|.+|=. .++.++++-++.+. ..+++ +|..++..
T Consensus 185 I~VEv~tleea~~A~~--~GaDiI~LDn~-----~~e~l~~~v~~~~~------------------~~~~~-~ieAsGgI 238 (273)
T PRK05848 185 IEIECESLEEAKNAMN--AGADIVMCDNM-----SVEEIKEVVAYRNA------------------NYPHV-LLEASGNI 238 (273)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEECCC-----CHHHHHHHHHHhhc------------------cCCCe-EEEEECCC
Confidence 3446889999999884 46899998852 23444444332110 11233 57788889
Q ss_pred CHHHHHHHHHcCCCEEEe
Q 002879 830 IQATYEECLRSGMDGYVS 847 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl~ 847 (871)
..+...++.+.|+|.+.+
T Consensus 239 t~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 239 TLENINAYAKSGVDAISS 256 (273)
T ss_pred CHHHHHHHHHcCCCEEEe
Confidence 999999999999997653
No 326
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=39.58 E-value=1.2e+02 Score=31.97 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=25.7
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+|||+.-.-.+.++..+++++|+|+...
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 48999988888899999999999998864
No 327
>PRK13558 bacterio-opsin activator; Provisional
Probab=39.12 E-value=1e+02 Score=37.63 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=70.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.++|++|+++.........+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++.... ..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~---g~~~l~~l~~~~~--~~ 80 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFD---GLALLEAVRQTTA--VP 80 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCc---HHHHHHHHHhcCC--CC
Confidence 579999999998888888899999999999999999887654 4478888887653322 2234555544221 22
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchH--HHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS--MLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~--~l~~~l~~~~ 700 (871)
.++++............ -..+...++.||.... .+...+...+
T Consensus 81 piI~lt~~~~~~~~~~a-l~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 81 PVVVVPTAGDEAVARRA-VDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred CEEEEECCCCHHHHHHH-HhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 33333332221111111 1124556888886543 4444444443
No 328
>PRK10403 transcriptional regulator NarP; Provisional
Probab=39.07 E-value=2.6e+02 Score=27.60 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=69.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHH-hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~-~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+++++++++.........+.. .++.+. .+.+..+++..... ..++.+++|......+ ....+..++....
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---~~~~~~~l~~~~~-- 79 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMS---GLDTLNALRRDGV-- 79 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCc---HHHHHHHHHHhCC--
Confidence 5789999999888877888865 577765 57788888776543 3477888876543322 1223444443221
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
...++++............ ...+...++.||.....+...+...+
T Consensus 80 ~~~ii~l~~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~ 124 (215)
T PRK10403 80 TAQIIILTVSDASSDVFAL-IDAGADGYLLKDSDPEVLLEAIRAGA 124 (215)
T ss_pred CCeEEEEeCCCChHHHHHH-HHcCCCeEEecCCCHHHHHHHHHHHh
Confidence 1233333322111111111 12256678999999999888887765
No 329
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=38.21 E-value=4e+02 Score=26.16 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 002879 225 LAISTSIGILVIASLVGHIFQATVNR-----IAKVEEDYHGMMELKKKAEA 270 (871)
Q Consensus 225 ~~~~~~~~~l~~~~l~~~~~~~~~~r-----~~~~~~~~~~~~~~~~~~e~ 270 (871)
..+..++.++++++++.++++..+.. -..+........+.+.+++.
T Consensus 10 ~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~ 60 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQN 60 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555554433 23344444444444444433
No 330
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=38.18 E-value=1.1e+02 Score=33.12 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=50.9
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+.+-++|.+.+. ...|+|++| +|+.-+=-++.+.+++. .++ .++..++..
T Consensus 192 IeVEv~tleqa~ea~~--agaDiI~LD-n~~~e~l~~av~~~~~~----------------------~~~-~~leaSGGI 245 (284)
T PRK06096 192 IVVEADTPKEAIAALR--AQPDVLQLD-KFSPQQATEIAQIAPSL----------------------APH-CTLSLAGGI 245 (284)
T ss_pred EEEECCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHHhhcc----------------------CCC-eEEEEECCC
Confidence 4556789999999884 458999999 45444444444444421 112 468899999
Q ss_pred CHHHHHHHHHcCCCEEE
Q 002879 830 IQATYEECLRSGMDGYV 846 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl 846 (871)
..+...+.-+.|+|-..
T Consensus 246 ~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 246 NLNTLKNYADCGIRLFI 262 (284)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 331
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.01 E-value=3.5e+02 Score=25.59 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 002879 313 VRTAQASGKAL 323 (871)
Q Consensus 313 l~~i~~~~~~L 323 (871)
.+-+..+++.|
T Consensus 70 ~~Hla~~a~~L 80 (128)
T PF06295_consen 70 YQHLAKGAEEL 80 (128)
T ss_pred HHHHHHHHHHh
Confidence 33444444443
No 332
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=37.95 E-value=3.7e+02 Score=29.74 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=59.8
Q ss_pred HHHHcCCEE--EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHhhhccccccccccccchhhhccC
Q 002879 743 GLKRYGAAV--VCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIRRGEVSIEAYENV 815 (871)
Q Consensus 743 ~L~~~g~~v--~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 815 (871)
.|-+.|+.| .|++|...|-.+.. -.+ +.+|=+--|...| -+.++.+++.
T Consensus 192 ~L~~~Gf~v~~yc~~d~~~a~~l~~--~g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~--------------------- 247 (326)
T PRK11840 192 ILVKEGFQVMVYCSDDPIAAKRLED--AGA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------------------- 247 (326)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHh--cCC-EEEeeccccccCCCCCCCHHHHHHHHHc---------------------
Confidence 344569887 57778877766653 233 5555433333333 4455666542
Q ss_pred CCCCccEEEEccCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHh
Q 002879 816 SNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVS 860 (871)
Q Consensus 816 ~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~-----KP~~~~~L~~~l~ 860 (871)
..+|||.=.+-...++...+++.|+|+.+. |-=++-.+.++.+
T Consensus 248 --~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 248 --ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred --CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence 358999888888999999999999999864 4455555555544
No 333
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.72 E-value=83 Score=33.81 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=31.4
Q ss_pred CCccEEEEccCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 002879 818 FHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREV 859 (871)
Q Consensus 818 ~~~pIIalTa~~------~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l 859 (871)
..+|+++||=.. .+....+|.++|+|+.+.--...++....+
T Consensus 90 ~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~ 137 (263)
T CHL00200 90 IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLI 137 (263)
T ss_pred CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHH
Confidence 358988888653 356788999999999999877666654433
No 334
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=37.40 E-value=4.2e+02 Score=28.61 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=56.5
Q ss_pred CeEEEEeCCHH---HHHHHHHHHHHcCCEEEEEcCH---HHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHhhhc
Q 002879 725 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREMEH 796 (871)
Q Consensus 725 ~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g---~eAl~~l~~~~~~DlilmDi~MP~md--G~e~~~~IR~~~~ 796 (871)
.++.+++-+.. ....++...+..|+.+..+.+. .++++.+.....+|+||+|. |+.. .-+.++++++...
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt--~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETMG 181 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEEC--CCCCcCCHHHHHHHHHHHh
Confidence 46766665432 2233445555578888877665 34444443334699999997 3333 2334444544321
Q ss_pred cccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHH----HHcCCCEEEeCCCC
Q 002879 797 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC----LRSGMDGYVSKPFE 851 (871)
Q Consensus 797 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~----~~~G~d~yl~KP~~ 851 (871)
. ..+.-.+++++|.....+..+. -..+.++.|.-=+|
T Consensus 182 ~------------------~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 182 Q------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred h------------------hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 0 1122346677776555444332 23577777643333
No 335
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=36.53 E-value=89 Score=31.60 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.4
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
|||||-..-.-.-+..+|++.|+.+....+....++.+. ...||.|++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE-ALLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH-hcCCCEEEE
Confidence 899999998888899999999999888775432223332 235885554
No 336
>PRK11677 hypothetical protein; Provisional
Probab=36.16 E-value=4e+02 Score=25.55 Aligned_cols=9 Identities=11% Similarity=0.530 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 002879 236 IASLVGHIF 244 (871)
Q Consensus 236 ~~~l~~~~~ 244 (871)
+.+++|+++
T Consensus 12 vG~iiG~~~ 20 (134)
T PRK11677 12 VGIIIGAVA 20 (134)
T ss_pred HHHHHHHHH
Confidence 333444443
No 337
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=35.97 E-value=3.1e+02 Score=27.80 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhhcccccccccc
Q 002879 736 NLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 736 n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g 805 (871)
........+++.|..+... .+..+.++.+. ...|.|+.+-.-|+..| ++.++++|++-.+
T Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~--~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~-------- 161 (210)
T TIGR01163 92 HIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVL--PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDE-------- 161 (210)
T ss_pred hHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH--hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHh--------
Confidence 3334446666677654432 34566666653 23577766554454444 3444555543210
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
..+++||+ +.+....+...++.+.|+|.++.-
T Consensus 162 ----------~~~~~~i~-v~GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 162 ----------NGLSILIE-VDGGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred ----------cCCCceEE-EECCcCHHHHHHHHHcCCCEEEEC
Confidence 12346664 444556788889999999988653
No 338
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=35.91 E-value=1.4e+02 Score=32.14 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=24.6
Q ss_pred CccEE--EEccCCCHHHHHHHHHcCCCEEEe
Q 002879 819 HVPIL--AMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 819 ~~pII--alTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+||| +.-+-..+++..+++++|+|+++.
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 48997 766666999999999999999864
No 339
>PRK14974 cell division protein FtsY; Provisional
Probab=35.07 E-value=3.9e+02 Score=29.87 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=58.0
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHHHcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHH
Q 002879 724 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMD--GFEATKII 791 (871)
Q Consensus 724 ~~~ILvVdDn~---~n~~~l~~~L~~~g~~v~~a~~g-------~eAl~~l~~~~~~DlilmDi~MP~md--G~e~~~~I 791 (871)
+.+|++++-+. -....++......|..+.....| .+|++... ...+|+||+|-- +.. -.++...+
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~-~~~~DvVLIDTa--Gr~~~~~~lm~eL 244 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK-ARGIDVVLIDTA--GRMHTDANLMDEL 244 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH-hCCCCEEEEECC--CccCCcHHHHHHH
Confidence 45788887663 22334555556677776655443 24445443 356899999973 332 23445555
Q ss_pred HhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHH--H--HcCCCEEEeCCCC
Q 002879 792 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC--L--RSGMDGYVSKPFE 851 (871)
Q Consensus 792 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~--~--~~G~d~yl~KP~~ 851 (871)
+++... ..++.-++++.|....+....+ + ..|.++.|.==+|
T Consensus 245 ~~i~~~------------------~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 245 KKIVRV------------------TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHHHh------------------hCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 543210 1234446666665554444332 2 2688887654333
No 340
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.99 E-value=2.8e+02 Score=29.48 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=33.3
Q ss_pred CccEEEEccCCCHHHHHHHHHcC-CCEEEe------CCCCHHHHHHHHh
Q 002879 819 HVPILAMTADVIQATYEECLRSG-MDGYVS------KPFEAEQLYREVS 860 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G-~d~yl~------KP~~~~~L~~~l~ 860 (871)
.+|||+.-+-.+.++..++++.| +|+.+. +=++.+++.+.++
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 58999999999999999999988 999554 4466666665554
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=34.86 E-value=3.9e+02 Score=28.81 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHHcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHH
Q 002879 724 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDG--FEATKII 791 (871)
Q Consensus 724 ~~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g-------~eAl~~l~~~~~~DlilmDi~MP~mdG--~e~~~~I 791 (871)
+++|+++|-+.. ...-++...++.|..+.....+ .++++... ...||+||+|. |+... -....++
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~-~~~~D~ViIDT--~G~~~~d~~~~~el 176 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK-ARNIDVVLIDT--AGRLQNKVNLMDEL 176 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH-HCCCCEEEEeC--CCCCcchHHHHHHH
Confidence 568999996642 2344555666777666554332 23333332 35699999997 44332 2233344
Q ss_pred HhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHH----cCCCEEEe
Q 002879 792 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVS 847 (871)
Q Consensus 792 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----~G~d~yl~ 847 (871)
+++..-.... -...++-.++++.+....+....+.. .|.++.|.
T Consensus 177 ~~~~~~~~~~------------~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 177 KKIKRVIKKV------------DKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHHhcc------------cCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 4432100000 00123455788888766654444332 56777654
No 342
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.84 E-value=4.6e+02 Score=30.21 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHHHcCCEEEEEcCHHHH---HHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhh
Q 002879 724 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG--FEATKIIREME 795 (871)
Q Consensus 724 ~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~~a~~g~eA---l~~l~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~ 795 (871)
+++|++++-++.- ...++..-+..|+.+..+.+..+. ++.+.....+|+||+|. |+.+- .+..+++++.-
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT--aGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETM 346 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC--ccccCcCHHHHHHHHHHH
Confidence 5678888876532 233344444567888777665544 33333223699999996 33322 33344444432
Q ss_pred ccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHH---H-HHcCCCEEEeCCCC
Q 002879 796 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---C-LRSGMDGYVSKPFE 851 (871)
Q Consensus 796 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~---~-~~~G~d~yl~KP~~ 851 (871)
.. ..++-.+++++|.....+..+ . -..|.+++|.==+|
T Consensus 347 k~------------------~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 347 GQ------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred hh------------------cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 10 122334666777555444222 2 23588887654444
No 343
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.61 E-value=1.2e+02 Score=33.81 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCCH-HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHH
Q 002879 757 GKKATELLMPPHQFDACFMDIQMPEMDG-FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 835 (871)
Q Consensus 757 g~eAl~~l~~~~~~DlilmDi~MP~mdG-~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~ 835 (871)
.+++.+++...-..|+|.+|+.-+..+. .+++++||+. .+.+|||+=.- .+.++..
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~----------------------~p~~~vi~g~V-~t~e~a~ 155 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH----------------------LPETFVIAGNV-GTPEAVR 155 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh----------------------CCCCeEEEEec-CCHHHHH
Confidence 3556666632213599999998865443 4567777762 33577777322 2678889
Q ss_pred HHHHcCCCEEE
Q 002879 836 ECLRSGMDGYV 846 (871)
Q Consensus 836 ~~~~~G~d~yl 846 (871)
.+.++|+|...
T Consensus 156 ~l~~aGad~i~ 166 (326)
T PRK05458 156 ELENAGADATK 166 (326)
T ss_pred HHHHcCcCEEE
Confidence 99999999875
No 344
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=34.05 E-value=2.3e+02 Score=27.83 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=40.2
Q ss_pred CCccEEEEeCCCCCCCHH-------HHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHc
Q 002879 768 HQFDACFMDIQMPEMDGF-------EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 840 (871)
Q Consensus 768 ~~~DlilmDi~MP~mdG~-------e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~ 840 (871)
...|.+.++-..+...+. ...+.++. ...+||++..+-...++..+++++
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~pi~~~GGi~~~~~~~~~~~~ 191 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----------------------GSKVPVIAGGGINDPEDAAEALAL 191 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----------------------cCCCCEEEECCCCCHHHHHHHHHh
Confidence 457999988877765432 22333332 235899998877777999999999
Q ss_pred CCCEEEe
Q 002879 841 GMDGYVS 847 (871)
Q Consensus 841 G~d~yl~ 847 (871)
|+|.+..
T Consensus 192 Gad~v~v 198 (200)
T cd04722 192 GADGVIV 198 (200)
T ss_pred CCCEEEe
Confidence 9998863
No 345
>PRK11677 hypothetical protein; Provisional
Probab=34.04 E-value=2.2e+02 Score=27.25 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 228 STSIGILVIASLVGHIFQATVNRIAKV 254 (871)
Q Consensus 228 ~~~~~~l~~~~l~~~~~~~~~~r~~~~ 254 (871)
..++..+++.++++++.........++
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~l 34 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQAL 34 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHH
Confidence 333444555666666655444333333
No 346
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=33.58 E-value=2e+02 Score=30.33 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=47.9
Q ss_pred CCeEEEE------eCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 002879 724 GRKILIV------DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 794 (871)
Q Consensus 724 ~~~ILvV------dDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~ 794 (871)
+++|++| +|........+..+++.|+++.......+..+.+. ..|+|++ ++.|-+.+++.+|+.
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~---~ad~I~v----~GGnt~~l~~~l~~~ 100 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE---NAEAIFV----GGGNTFQLLKQLYER 100 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh---cCCEEEE----CCccHHHHHHHHHHC
Confidence 3567776 45455566788999999999998887777777663 4688876 788888888888763
No 347
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=33.32 E-value=1.7e+02 Score=29.69 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=68.3
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEe-CCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV-SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
...+++++++.+.++......|...|+++.-+ .+...+..... ....|++++|.+....+.... +......
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~--~~~pDvVildie~p~rd~~e~------~~~~~~~ 75 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE--RLQPDVVILDIEMPRRDIIEA------LLLASEN 75 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH--hcCCCEEEEecCCCCccHHHH------HHHhhcC
Confidence 35789999999999988888888888775533 33322222211 245778888877655552221 1222223
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
..+.++++.....+....... ..|...++.||++...+...|.-+.
T Consensus 76 ~~~piv~lt~~s~p~~i~~a~-~~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 76 VARPIVALTAYSDPALIEAAI-EAGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred CCCCEEEEEccCChHHHHHHH-HcCCeEEEecCcchhhhhHHHHHHH
Confidence 333344443322222222222 2367789999999998888776554
No 348
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=32.48 E-value=42 Score=40.16 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.5
Q ss_pred EEEEEecCCCCChhhHhhhcccccc
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQ 500 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q 500 (871)
.|+|.|+|.||++...+-+-.+++.
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhh
Confidence 3899999999999887766555543
No 349
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=32.45 E-value=3e+02 Score=34.32 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=73.0
Q ss_pred HHHHHHHHHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCC-----CCHHHHHHHHHhhhccccccccccccchh
Q 002879 738 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMPE-----MDGFEATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 738 ~~l~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi~MP~-----mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
......|++.|+.+.. +.+|...+..+. .-++|.|=+|-.+=. -....+++.|..+-+
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~-~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 745 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLV-SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQ-------------- 745 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHh-hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHH--------------
Confidence 3445578889998865 568888888774 467999999874411 112334444443321
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHHHcCCC----EEEeCCCCHHHHHHHHhhhCC
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d----~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.-++.+| .++-.+.+....+.+.|+| .|+.||...++|...|++|.+
T Consensus 746 ------~~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~~ 796 (799)
T PRK11359 746 ------SLNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLP 796 (799)
T ss_pred ------HCCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhccc
Confidence 1235554 4677778888889999998 478999999999999998854
No 350
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=32.25 E-value=3.5e+02 Score=27.94 Aligned_cols=116 Identities=15% Similarity=0.181 Sum_probs=69.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
..+++++|++|..+...+..|. .++. +..+.+..+++.... .++++++|..+...+ ....+...++....
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~--G~~~~~~~i~~~~p-- 80 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKK--LIHYWQDTLSRKNN-- 80 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCcc--HHHHHHHHHHHhCC--
Confidence 3568999999999998888887 4454 335567777765432 378999998765433 22111223332211
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..+++++..... ..........+...++.|+.....+..+++.+..
T Consensus 81 ~~~vvvlt~~~~-~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 81 NIKILLLNTPED-YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred CCcEEEEECCch-hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 245555544322 1111111112566789999999999999988764
No 351
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=32.17 E-value=8.6e+02 Score=28.27 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 002879 227 ISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIR 287 (871)
Q Consensus 227 ~~~~~~~l~~~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~~e~a~~aks~fla~iSHElR 287 (871)
+..++.++++++++.++++..+. |..++........+.+++++++...-.+-++....|-+
T Consensus 5 i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~ 70 (445)
T PRK13428 5 IGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAA 70 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555544433 33334444443444444444433332333444444433
No 352
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=32.14 E-value=68 Score=34.61 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=24.9
Q ss_pred CccEE--EEccCCCHHHHHHHHHcCCCEEEe
Q 002879 819 HVPIL--AMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 819 ~~pII--alTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+||| +.-+-..+++...++++|+|++..
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaV 227 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFV 227 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEE
Confidence 58998 777666999999999999999854
No 353
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=32.06 E-value=87 Score=33.24 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=49.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC------EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA------AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~------~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~ 793 (871)
.+|-+||=++...++++..+..... .-....||..-++.... ..||+|++|+.-|...+ .|+.+.+++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDVIIVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEEEEEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccEEEEeCCCCCCCcccccCHHHHHHHHh
Confidence 5899999999999999998875321 23378899998887532 27999999998887654 355566554
No 354
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=32.01 E-value=1.4e+02 Score=30.35 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=39.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCE--EE-EEcCHHHHHHHhCC-CCCccEEEEeCCC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP-PHQFDACFMDIQM 779 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eAl~~l~~-~~~~DlilmDi~M 779 (871)
.+|..||.++.....++.-++..|.. +. ...|..+++..+.. ...||+|++|-=.
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPF 131 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCC
Confidence 37999999999999999999888753 33 34455556554422 2348999999644
No 355
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=31.86 E-value=56 Score=33.36 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=37.3
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
|||||.+.-.-.-+...|++.|+++....+.+..++.+. ...||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE-NMKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh-hCCCCEEEE
Confidence 899999998888899999999999998877644444342 346888876
No 356
>PRK15029 arginine decarboxylase; Provisional
Probab=31.82 E-value=2.7e+02 Score=34.74 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=52.8
Q ss_pred cEEEEeCCchh--------hhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcc-hhHHHHHHh
Q 002879 577 MKALVVDPRPI--------RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS-VSTLFVNNL 647 (871)
Q Consensus 577 ~~~l~vd~~~~--------~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~ 647 (871)
+++|+||++.. ........|+..|++|..+.+..+++..+... ..++++++|..+...+.. ....++..+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 36899999985 57778889999999999999999999988542 357899998665433321 112456666
Q ss_pred hh
Q 002879 648 RK 649 (871)
Q Consensus 648 ~~ 649 (871)
++
T Consensus 80 R~ 81 (755)
T PRK15029 80 HE 81 (755)
T ss_pred Hh
Confidence 65
No 357
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=31.47 E-value=1.7e+02 Score=30.11 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=29.5
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEE--eCCCCHHHHHHHHhh
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYV--SKPFEAEQLYREVSR 861 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl--~KP~~~~~L~~~l~~ 861 (871)
.+||++...-.+....+.|.++|+|+.+ ..-+..+.+...+.+
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 5899987655666688999999999997 333333555444443
No 358
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=31.39 E-value=4.2e+02 Score=26.72 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=50.2
Q ss_pred HHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhhccccccccccccch
Q 002879 740 AAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSI 809 (871)
Q Consensus 740 l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~ 809 (871)
....+++.|..+.... +..+.++.+. .. .|.++.+...|+-+| .+..+++|++-.
T Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~------------- 161 (211)
T cd00429 97 TIQLIKELGMKAGVALNPGTPVEVLEPYL-DE-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIP------------- 161 (211)
T ss_pred HHHHHHHCCCeEEEEecCCCCHHHHHHHH-hh-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHH-------------
Confidence 3444556676543322 2344455443 22 688877765566544 344455554311
Q ss_pred hhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 810 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 810 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
...+++||++ .+....+...++.++|+|+++.-
T Consensus 162 -----~~~~~~pi~v-~GGI~~env~~~~~~gad~iivg 194 (211)
T cd00429 162 -----ENNLNLLIEV-DGGINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred -----hcCCCeEEEE-ECCCCHHHHHHHHHcCCCEEEEC
Confidence 0123467654 44566788999999999998753
No 359
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=31.06 E-value=1.6e+02 Score=31.30 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=41.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC--EEE-EEcCHHHHHHHhCC----CCCccEEEEeCC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP----PHQFDACFMDIQ 778 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eAl~~l~~----~~~~DlilmDi~ 778 (871)
-+|.-+|-++.....++..+++.|+ .|. ...+..+.+..+.. ...||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4799999999999999999999985 343 34566666665532 257999999986
No 360
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=30.79 E-value=6.2e+02 Score=27.00 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=54.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEE--EcCH-HHHHHHhCCC-CCccEEEEeCCCCCCC---------HHHHHHHHHh
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVC--VERG-KKATELLMPP-HQFDACFMDIQMPEMD---------GFEATKIIRE 793 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~--a~~g-~eAl~~l~~~-~~~DlilmDi~MP~md---------G~e~~~~IR~ 793 (871)
|++.|--......+...++++|..... +.+. .+-+..+... ..|.+++. . + +-. -.+.++++|+
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHHHHHh
Confidence 555554444556677778888976442 2222 3333333222 23555543 2 1 222 3556666665
Q ss_pred hhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCC
Q 002879 794 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 849 (871)
Q Consensus 794 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP 849 (871)
. ...||++=-+-...++..++.++|+|+++.--
T Consensus 196 ~-----------------------~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 196 Y-----------------------SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred h-----------------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 2 24576653333348999999999999998764
No 361
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.67 E-value=6.3e+02 Score=28.08 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=52.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 002879 253 KVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLIN 328 (871)
Q Consensus 253 ~~~~~~~~~~~----~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIn 328 (871)
.++++++++++ -++++++..+..++-.+.++|..+. |..+...+.-+... .+.+..+.++.++...++....+.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhHH
Confidence 44455544443 3567777788888899999999885 45555555555433 455667777777777777666666
Q ss_pred HHHHH
Q 002879 329 EVLDQ 333 (871)
Q Consensus 329 dlLd~ 333 (871)
|+=.+
T Consensus 86 DmEa~ 90 (330)
T PF07851_consen 86 DMEAF 90 (330)
T ss_pred HHHhh
Confidence 66543
No 362
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=30.59 E-value=68 Score=33.16 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred EEecHHHHHHHHHHHHHHhhccCC
Q 002879 384 LIGDPGRFRQIITNLMGNSIKFTE 407 (871)
Q Consensus 384 v~~D~~rl~qIl~NLl~NAiKfT~ 407 (871)
+-|||.|-+-|-.|++.|++++++
T Consensus 19 mPGDPlRAK~iAetfLe~~~~vne 42 (236)
T COG0813 19 MPGDPLRAKYIAETFLENAVCVNE 42 (236)
T ss_pred cCCCCchHHHHHHHHHhhhhhhhh
Confidence 458999999999999999999984
No 363
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.50 E-value=4e+02 Score=30.78 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH--HHHHHHHhhhccc
Q 002879 724 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF--EATKIIREMEHNF 798 (871)
Q Consensus 724 ~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~--e~~~~IR~~~~~~ 798 (871)
+++|.+|+-++.- ...+...-+..|+.+..+.+..+....+..-..+|+||+|. |++... ..+..++++-..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt--~G~~~~d~~~~~~L~~ll~~- 327 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT--AGRSQRDKRLIEELKALIEF- 327 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC--CCCCCCCHHHHHHHHHHHhc-
Confidence 4689999887631 12233333446777777777665544443334699999997 444322 233344433110
Q ss_pred cccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHH----HcCCCEEEeCCCC
Q 002879 799 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 851 (871)
Q Consensus 799 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~----~~G~d~yl~KP~~ 851 (871)
...+.-..+++++.....+..+.. ..|.+.+|.--++
T Consensus 328 ----------------~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlD 368 (424)
T PRK05703 328 ----------------SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLD 368 (424)
T ss_pred ----------------cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 001122367788877766665543 3466666543343
No 364
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=30.12 E-value=2.5e+02 Score=30.61 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=38.6
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHhhhCCC
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGY------VSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~y------l~KP~~~~~L~~~l~~~~~~ 865 (871)
.+|||+.-.-.+.++..+++.+|+|.. +..|.-..++.+.+.+|+..
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999843 45687777888888777654
No 365
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=29.88 E-value=1.9e+02 Score=19.83 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=35.6
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEee
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 629 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d 629 (871)
+++++++++.........+...|+.+....+...+...+... .++.++++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~ 51 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLD 51 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEe
Confidence 578888888888878888888999988888877776655322 24444443
No 366
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.54 E-value=3.6e+02 Score=27.25 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccE-EEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh
Q 002879 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI-LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 861 (871)
Q Consensus 783 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pI-IalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~ 861 (871)
-|++.+++||+. ...|+ +.+...........|.++|+|+.+.-....++....++.
T Consensus 43 ~~~~~v~~i~~~-----------------------~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKY-----------------------TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhc-----------------------CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 578889999862 12455 324444456677888899999977765544444444433
No 367
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=29.49 E-value=80 Score=34.47 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=40.0
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCE------EEeCCCCHHHHHHHHhhhCCC
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDG------YVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~------yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+|||+.-.-.+.++..+++.+|+|. ++.+|.-..++.+.+.+|+..
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 48999999988999999999999995 677897778888888877654
No 368
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=29.30 E-value=7.2e+02 Score=26.43 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 225 LAISTSIGILVIASLVGHIFQATVNR 250 (871)
Q Consensus 225 ~~~~~~~~~l~~~~l~~~~~~~~~~r 250 (871)
+.+..++-++++++++.++++..+..
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~~ 32 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPIIQ 32 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666555443
No 369
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=28.96 E-value=6.5e+02 Score=25.86 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002879 250 RIAKVEEDYHGMMELKKKAEAA 271 (871)
Q Consensus 250 r~~~~~~~~~~~~~~~~~~e~a 271 (871)
|..++..++....+.+.+++..
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~ 106 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAA 106 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 370
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=28.92 E-value=7e+02 Score=29.58 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHHH-c-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeC--------------CCCCC
Q 002879 724 GRKILIVDDNN---VNLKVAAAGLKR-Y-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEM 782 (871)
Q Consensus 724 ~~~ILvVdDn~---~n~~~l~~~L~~-~-g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi--------------~MP~m 782 (871)
|..|+++|--. .+..-.-..+++ + +..+.. +.+.++|..+.. ...|.|..-+ -.|..
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~~ 337 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCccccCccccccCCCcc
Confidence 34577777533 222233444444 4 355543 778888888773 4689987632 12333
Q ss_pred CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 783 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.-+..+.++.+ ...+|||+--+-....+..+|+.+||+.++.
T Consensus 338 ~~i~~~~~~~~-----------------------~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 338 TAVYKVASIAA-----------------------QHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cHHHHHHHHHH-----------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34444554443 1258999999999999999999999998764
No 371
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.80 E-value=1.8e+02 Score=31.61 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=46.6
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+++-+||.+.+. ...|+|.+|=+-| -++-+.+... ....| +..++..
T Consensus 197 IeVEv~tleea~ea~~--~gaDiI~LDn~s~----e~l~~av~~~----------------------~~~~~-leaSGGI 247 (281)
T PRK06106 197 IEVEVDTLDQLEEALE--LGVDAVLLDNMTP----DTLREAVAIV----------------------AGRAI-TEASGRI 247 (281)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCCCCH----HHHHHHHHHh----------------------CCCce-EEEECCC
Confidence 3467889999999884 4689999995433 2222222211 01233 7889999
Q ss_pred CHHHHHHHHHcCCCEEE
Q 002879 830 IQATYEECLRSGMDGYV 846 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl 846 (871)
..+...+.-+.|+|-..
T Consensus 248 ~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 248 TPETAPAIAASGVDLIS 264 (281)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 372
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=28.77 E-value=1.9e+02 Score=28.84 Aligned_cols=71 Identities=25% Similarity=0.231 Sum_probs=47.5
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+++-+|+.+.+. ...|.|.+|=.-| -+=-++.+.++.. .++ ..|.+++..
T Consensus 83 I~VEv~~~ee~~ea~~--~g~d~I~lD~~~~-~~~~~~v~~l~~~----------------------~~~-v~ie~SGGI 136 (169)
T PF01729_consen 83 IEVEVENLEEAEEALE--AGADIIMLDNMSP-EDLKEAVEELREL----------------------NPR-VKIEASGGI 136 (169)
T ss_dssp EEEEESSHHHHHHHHH--TT-SEEEEES-CH-HHHHHHHHHHHHH----------------------TTT-SEEEEESSS
T ss_pred EEEEcCCHHHHHHHHH--hCCCEEEecCcCH-HHHHHHHHHHhhc----------------------CCc-EEEEEECCC
Confidence 3456888999999884 4599999997644 1222233333332 123 678899999
Q ss_pred CHHHHHHHHHcCCCEEE
Q 002879 830 IQATYEECLRSGMDGYV 846 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl 846 (871)
..+...+..+.|+|.+.
T Consensus 137 ~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVIS 153 (169)
T ss_dssp STTTHHHHHHTT-SEEE
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998774
No 373
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.76 E-value=3.8e+02 Score=29.23 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=57.0
Q ss_pred eEEEEeCCHHHHHHHHHHHH----HcCC---EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccc
Q 002879 726 KILIVDDNNVNLKVAAAGLK----RYGA---AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 798 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~----~~g~---~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~ 798 (871)
.|||=|.+-...--+...++ +.++ ..+.+++-+||.+.+. ...|+|++|=+-| -+=-++.+.++.
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~--agaDiImLDnmsp-e~l~~av~~~~~----- 240 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA--AGADIIMLDNMSL-EQIEQAITLIAG----- 240 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH--cCCCEEEECCCCH-HHHHHHHHHhcC-----
Confidence 46665555433322333332 2332 3446789999999884 4589999995433 222233332221
Q ss_pred cccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 799 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 799 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
+ .++..++....+...+.-+.|+|-..
T Consensus 241 --------------------~-~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 241 --------------------R-SRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred --------------------c-eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 1 36788999999999999999998543
No 374
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=28.09 E-value=2.2e+02 Score=28.79 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=35.0
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
|+|||=.--|...+...|++.|+.+..+.+..+ + ..+|.|++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l---~~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I---LSADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h---ccCCEEEE
Confidence 578888888999999999999999999887543 3 24899887
No 375
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=27.73 E-value=2e+02 Score=31.38 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=47.4
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+++-+||.+.+. ...|+|.+|-.-| |-++++-++- ..+ .+|..++..
T Consensus 211 IeVEv~sleea~ea~~--~gaDiI~LDn~s~-----e~~~~av~~~---------------------~~~-~~ieaSGGI 261 (296)
T PRK09016 211 VEVEVENLDELDQALK--AGADIIMLDNFTT-----EQMREAVKRT---------------------NGR-ALLEVSGNV 261 (296)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCCCCh-----HHHHHHHHhh---------------------cCC-eEEEEECCC
Confidence 4567889999999884 4589999996544 2232222211 012 367788899
Q ss_pred CHHHHHHHHHcCCCEEE
Q 002879 830 IQATYEECLRSGMDGYV 846 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl 846 (871)
..+...+.-+.|+|...
T Consensus 262 ~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 262 TLETLREFAETGVDFIS 278 (296)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 376
>PLN02823 spermine synthase
Probab=27.61 E-value=1.4e+02 Score=33.27 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC-----CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPE 781 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g-----~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~ 781 (871)
.+|-+||=|+...++++..+...+ -.+. ...||.+-++.. ...||+||+|+--|.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~ 188 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPV 188 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCcc
Confidence 479999999999999999885321 2233 467888877643 457999999986554
No 377
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=27.60 E-value=1.7e+02 Score=30.25 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=29.0
Q ss_pred CccEEEEccC----------CCHHHHHHHHHcCCCEEEe-------CC--CCHHHHHHHHhh
Q 002879 819 HVPILAMTAD----------VIQATYEECLRSGMDGYVS-------KP--FEAEQLYREVSR 861 (871)
Q Consensus 819 ~~pIIalTa~----------~~~~~~~~~~~~G~d~yl~-------KP--~~~~~L~~~l~~ 861 (871)
.+|||.++.. ...+...+|.++|+| ++. +| -+..++.+.+++
T Consensus 56 ~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 56 DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 4788766541 134578899999999 554 45 566777777776
No 378
>PLN02366 spermidine synthase
Probab=27.52 E-value=3.2e+02 Score=30.14 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=45.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC-----CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g-----~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~ 793 (871)
.+|-+||=++...++.+..+...+ -.+. ...|+.+.++.. ....||+||+|..-|..-. -++.+.+++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~ 194 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-PEGTYDAIIVDSSDPVGPAQELFEKPFFESVAR 194 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHH
Confidence 479999999998899998886531 1233 456777777654 2457999999987664322 244555544
No 379
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.33 E-value=4e+02 Score=30.47 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=40.8
Q ss_pred CCeEEEEeC-CHHHHHHHHHHHHHcCCEEEEEcC--HHHHHHHhCCCCCccEEEEeC
Q 002879 724 GRKILIVDD-NNVNLKVAAAGLKRYGAAVVCVER--GKKATELLMPPHQFDACFMDI 777 (871)
Q Consensus 724 ~~~ILvVdD-n~~n~~~l~~~L~~~g~~v~~a~~--g~eAl~~l~~~~~~DlilmDi 777 (871)
|-+||+.+| -.-.++.+..+|+++|++|..+.. +.+..+.+. +.+.++|++.-
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~-~~~tk~v~lEt 157 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIK-EPNTKLVFLET 157 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhc-ccCceEEEEeC
Confidence 568998888 566788999999999999998774 444555554 24689999875
No 380
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=27.33 E-value=5.8e+02 Score=26.88 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCEEEEE--cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHH-----HHHHHHhhhccccccccccccchh
Q 002879 738 KVAAAGLKRYGAAVVCV--ERGKKATELLMPPHQFDACFMDIQMPEMDGFE-----ATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 738 ~~l~~~L~~~g~~v~~a--~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e-----~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
-...+.|-+.||.|... .|.--|-.+. +-. -..+|=+--|...|.- .++.|++
T Consensus 120 l~Aae~Lv~eGF~VlPY~~dD~v~arrLe-e~G--caavMPl~aPIGSg~G~~n~~~l~iiie----------------- 179 (262)
T COG2022 120 LKAAEQLVKEGFVVLPYTTDDPVLARRLE-EAG--CAAVMPLGAPIGSGLGLQNPYNLEIIIE----------------- 179 (262)
T ss_pred HHHHHHHHhCCCEEeeccCCCHHHHHHHH-hcC--ceEeccccccccCCcCcCCHHHHHHHHH-----------------
Confidence 34567788889998854 4455444433 222 4578888888877643 4555554
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
...+|||+=.+-..+.+...+++.|+|+.|.
T Consensus 180 ------~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 180 ------EADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred ------hCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 2379999988889999999999999999985
No 381
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=27.16 E-value=3.3e+02 Score=29.13 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=45.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC-----CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g-----~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~md-----G~e~~~~IR~ 793 (871)
.++.+||-++...+.++..+...+ -.+. ...+|.+.++.. ...||+|++|.--|... .-++.+.+++
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~ 174 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDVIIVDSTDPVGPAETLFTKEFYELLKK 174 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccEEEEeCCCCCCcccchhHHHHHHHHHH
Confidence 479999999999999988886532 1222 346777777654 35799999998655432 2345555554
No 382
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=27.15 E-value=2.1e+02 Score=31.21 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=48.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHc--CC---EE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH
Q 002879 726 KILIVDDNNVNLKVAAAGLKRY--GA---AV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 788 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~--g~---~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~ 788 (871)
.|+++|-+....++-+.+|... || +| ....||..-++.+. .+.||+|+.|+.=|++++-.+-
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-ENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-cCCceEEEEecCCccchHHHHH
Confidence 6899999888888888888653 44 23 24559999999884 5789999999999999886543
No 383
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.15 E-value=3.1e+02 Score=27.34 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHhhhccccccccccccchhh
Q 002879 739 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIREMEHNFNNRIRRGEVSIEA 811 (871)
Q Consensus 739 ~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~~g~~~~~~ 811 (871)
..+..+......-..+.+..++.++. ....|.|+.----|.- -|++..+++++.
T Consensus 87 ~~r~~~~~~~~ig~S~h~~~e~~~a~--~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~----------------- 147 (180)
T PF02581_consen 87 EARKLLGPDKIIGASCHSLEEAREAE--ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA----------------- 147 (180)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHH--HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH-----------------
T ss_pred HhhhhcccceEEEeecCcHHHHHHhh--hcCCCEEEECCccCCCCCccccccCHHHHHHHHHh-----------------
Confidence 34555654444455678888876665 2457999987755433 388888888763
Q ss_pred hccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 812 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 812 ~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
.++||+|+=+- +.+...++.++|++++-
T Consensus 148 ------~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 148 ------SPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp ------TSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred ------CCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 24899998764 56778889999999874
No 384
>PLN02334 ribulose-phosphate 3-epimerase
Probab=27.12 E-value=4.9e+02 Score=27.04 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=46.8
Q ss_pred HHHHHcCCEEEEEcC---HHHHHHHhCCCCCccEE-EEeCCCCCCC-------HHHHHHHHHhhhccccccccccccchh
Q 002879 742 AGLKRYGAAVVCVER---GKKATELLMPPHQFDAC-FMDIQMPEMD-------GFEATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 742 ~~L~~~g~~v~~a~~---g~eAl~~l~~~~~~Dli-lmDi~MP~md-------G~e~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
..++..|..+-.+.+ ..+.++.+......|.| +|.+. |+.+ |++-++++|+.
T Consensus 109 ~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~-pg~~~~~~~~~~~~~i~~~~~~---------------- 171 (229)
T PLN02334 109 QQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVE-PGFGGQSFIPSMMDKVRALRKK---------------- 171 (229)
T ss_pred HHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEe-cCCCccccCHHHHHHHHHHHHh----------------
Confidence 344456766555443 35555544322116755 66654 4333 44455555542
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
....||. +.+....+...++.++|+|.++.
T Consensus 172 ------~~~~~I~-a~GGI~~e~i~~l~~aGad~vvv 201 (229)
T PLN02334 172 ------YPELDIE-VDGGVGPSTIDKAAEAGANVIVA 201 (229)
T ss_pred ------CCCCcEE-EeCCCCHHHHHHHHHcCCCEEEE
Confidence 1134644 55567888999999999997754
No 385
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=27.11 E-value=2.5e+02 Score=29.48 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=41.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCE--EE-EEcCHHHHHHHhCC---CCCccEEEEeCC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQ 778 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eAl~~l~~---~~~~DlilmDi~ 778 (871)
.+|.-+|=++.....++..+++.|+. +. ...+..+.+..+.. ...||+||+|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 48999999999999999999998863 33 34566777665521 357999999975
No 386
>PRK13566 anthranilate synthase; Provisional
Probab=27.02 E-value=1.7e+02 Score=36.24 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=40.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
..+++|||||-...+...+...|++.|+.|..+...... +.+. ...||.|++
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~-~~~~DgVVL 575 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLD-RVNPDLVVL 575 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhh-hcCCCEEEE
Confidence 457899999999888899999999999999988776432 2222 246898775
No 387
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=27.02 E-value=77 Score=32.06 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=35.4
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
|||||...-.-.-+...|++.|++|..+.+..--++.+. ...||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE-QLAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCeEEE
Confidence 899999988888899999999999999887642223332 235777664
No 388
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.00 E-value=2e+02 Score=31.47 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=47.7
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
..+.+++-+||.+.+. ...|+|++|=+-| -+=-++.+.++. + .++-.++..
T Consensus 208 IeVEvetleea~eA~~--aGaDiImLDnmsp-e~l~~av~~~~~-------------------------~-~~lEaSGGI 258 (294)
T PRK06978 208 VQIEVETLAQLETALA--HGAQSVLLDNFTL-DMMREAVRVTAG-------------------------R-AVLEVSGGV 258 (294)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEECCCCH-HHHHHHHHhhcC-------------------------C-eEEEEECCC
Confidence 3456889999999884 4689999995433 222333333321 2 368889999
Q ss_pred CHHHHHHHHHcCCCEEE
Q 002879 830 IQATYEECLRSGMDGYV 846 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl 846 (871)
..+...+.-+.|+|-..
T Consensus 259 t~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 259 NFDTVRAFAETGVDRIS 275 (294)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998543
No 389
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=27.00 E-value=5.1e+02 Score=30.62 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCeEEEEeC----CHHHHHHHHHHHHHc-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeC--------------CCCCC
Q 002879 724 GRKILIVDD----NNVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEM 782 (871)
Q Consensus 724 ~~~ILvVdD----n~~n~~~l~~~L~~~-g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi--------------~MP~m 782 (871)
|-.++++|- .......++.+=+.+ +..+.. +.+.++|..+.. ...|.|...+ -.|
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~Gs~~~t~~~~~~g~p-- 328 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSGSICITQEVCAVGRP-- 328 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCCcccccchhccCCCC--
Confidence 456888874 333334444444443 334433 556677776663 3578886533 223
Q ss_pred CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 783 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+.++..+++.-. ...+|||+=-+-....+..+|+.+||+..+.
T Consensus 329 -~~~ai~~~~~~~~--------------------~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 329 -QASAVYHVARYAR--------------------ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred -hHHHHHHHHHHHh--------------------hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444443211 1248999877888899999999999997764
No 390
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=26.95 E-value=1.1e+02 Score=33.28 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=24.7
Q ss_pred CccEE--EEccCCCHHHHHHHHHcCCCEEEe
Q 002879 819 HVPIL--AMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 819 ~~pII--alTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+||| +.-.-..+++...++++|+|+++.
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaV 233 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFV 233 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEE
Confidence 58998 766666999999999999999864
No 391
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.94 E-value=4.6e+02 Score=27.71 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=34.8
Q ss_pred CccEEEEccCCCHHHHHHHHHc-CCCEEEe------CCCCHHHHHHHHhh
Q 002879 819 HVPILAMTADVIQATYEECLRS-GMDGYVS------KPFEAEQLYREVSR 861 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~-G~d~yl~------KP~~~~~L~~~l~~ 861 (871)
.+|||+--+-.+.++..++++. |+++.+. .=++.+++.+.+.+
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 5899999988899999999975 9998886 45677777766654
No 392
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=26.32 E-value=3.5e+02 Score=29.77 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=46.1
Q ss_pred EEEEEcCHHHHHHHhC----CCCCccEEEEeCC--CCCC---CHHHHHHHHHhhhccccccccccccchhhhccCCCCCc
Q 002879 750 AVVCVERGKKATELLM----PPHQFDACFMDIQ--MPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 820 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~----~~~~~DlilmDi~--MP~m---dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 820 (871)
..+.+++-+||.+.+. .....|+|++|=+ -|+- +=-++-+.++.. ....
T Consensus 206 IeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~----------------------~~~~ 263 (308)
T PLN02716 206 IEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI----------------------NGRF 263 (308)
T ss_pred EEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh----------------------CCCc
Confidence 3456889999998874 0135899999954 1221 111122222111 1123
Q ss_pred cEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 821 PILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 821 pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
.+..++....+...+.-+.|+|-..
T Consensus 264 -~lEaSGGIt~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 264 -ETEASGNVTLDTVHKIGQTGVTYIS 288 (308)
T ss_pred -eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 4788999999999999999998543
No 393
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=26.23 E-value=6.8e+02 Score=25.48 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=55.5
Q ss_pred HHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhhccccccccccccch
Q 002879 740 AAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSI 809 (871)
Q Consensus 740 l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~ 809 (871)
....++..|..+-... +..+.++.+. ...|.|+++-.-|+.+| ++-.++++++-.
T Consensus 101 ~~~~~~~~~~~~g~~~~~~t~~e~~~~~~--~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~------------- 165 (220)
T PRK05581 101 LLQLIKSAGIKAGLVLNPATPLEPLEDVL--DLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLID------------- 165 (220)
T ss_pred HHHHHHHcCCEEEEEECCCCCHHHHHHHH--hhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHH-------------
Confidence 3445556676544322 3455555442 23687777655465554 333444443210
Q ss_pred hhhccCCCCCc-cEEEEccCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHhh
Q 002879 810 EAYENVSNFHV-PILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 861 (871)
Q Consensus 810 ~~~~~~~~~~~-pIIalTa~~~~~~~~~~~~~G~d~yl~-----KP~~~~~L~~~l~~ 861 (871)
...+ |.|++-+....+...++.++|+|.++. +.-++.+-.+.+.+
T Consensus 166 -------~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 166 -------ERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred -------hcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 0123 566677778888888999999997754 33344444444443
No 394
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.22 E-value=6.7e+02 Score=28.61 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCeEEEEeCCHHHHHH----HHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCC--CCCCCHHHHHHHHHhhhcc
Q 002879 724 GRKILIVDDNNVNLKV----AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHN 797 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~----l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~--MP~mdG~e~~~~IR~~~~~ 797 (871)
+++|.+|+-|.. |.. ++.+.+..|..+..+.+..+....+.....+|+||+|-- +| .|-.. +.+++++-..
T Consensus 206 g~~V~lit~Dt~-R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~ 282 (388)
T PRK12723 206 SLNIKIITIDNY-RIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSP-KDFMK-LAEMKELLNA 282 (388)
T ss_pred CCeEEEEeccCc-cHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHh
Confidence 568888887764 333 333344467777777776655444433356999999983 22 23332 3444443211
Q ss_pred ccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHH----cCCCEEEeCCCC
Q 002879 798 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPFE 851 (871)
Q Consensus 798 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----~G~d~yl~KP~~ 851 (871)
. ..+.-.+++++|.....+..+.++ .|.+++|.==+|
T Consensus 283 ~-----------------~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 283 C-----------------GRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred c-----------------CCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 0 011235788888888777765544 457777643333
No 395
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=26.21 E-value=2.4e+02 Score=27.52 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=40.4
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEE-------------------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHH
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCV-------------------ERGKKATELLMPPHQFDACFMDIQMPEMDGF 785 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a-------------------~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~ 785 (871)
++.+|+.+..+++++.. +..|..+..+ .|-++-++.+..-+.--++=||+.||+.+|-
T Consensus 53 ~~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~ 129 (170)
T COG2061 53 VFEGDREDKDAKIIRLL-EEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGE 129 (170)
T ss_pred EEEecccHHHHHHHHHH-HhCCcEEEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCC
Confidence 46667788888887776 7778765543 3566677766544445667789999988874
No 396
>PLN02335 anthranilate synthase
Probab=26.10 E-value=1.1e+02 Score=31.86 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=33.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
.++|||||-..-.-..+...|++.|+.+..+.+....++.+. ...||.|++
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~-~~~~d~iVi 68 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK-RKNPRGVLI 68 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-hcCCCEEEE
Confidence 468999985444556688888889998888775421123232 235777665
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.96 E-value=4e+02 Score=30.20 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=51.6
Q ss_pred CeEEEEeCCHH---HHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCC-CCCCCHHHHHHHHHhhhccccc
Q 002879 725 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ-MPEMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 725 ~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~-MP~mdG~e~~~~IR~~~~~~~~ 800 (871)
++|.++..+.. -.+.++.+-+.+|..+..+.++.+....+..-..+|+||+|.- +...|.. ..+.+..+...
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~-l~e~La~L~~~--- 243 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRT-VSDQIAMLHGA--- 243 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHH-HHHHHHHHhcc---
Confidence 46777766554 2344555556678888887776554443332345899999973 2223332 33444433110
Q ss_pred cccccccchhhhccCCCCCccEEEEccCCCHHHHHHH
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 837 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~ 837 (871)
..+.-.+++++|....++..+.
T Consensus 244 ---------------~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 244 ---------------DTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------------CCCCeEEEEecCccChHHHHHH
Confidence 1112247888887776664433
No 398
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.85 E-value=1.5e+02 Score=31.71 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCCccEEEEccCCC------HHHHHHHHHcCCCEEEeCCCCH
Q 002879 817 NFHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEA 852 (871)
Q Consensus 817 ~~~~pIIalTa~~~------~~~~~~~~~~G~d~yl~KP~~~ 852 (871)
+..+||++||=.+. +....+|.++|+|+.|.--+..
T Consensus 92 ~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ 133 (265)
T COG0159 92 GVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPP 133 (265)
T ss_pred CCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCCh
Confidence 34689999986443 4457789999999999874433
No 399
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.51 E-value=5.3e+02 Score=32.23 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=61.6
Q ss_pred CeEEEEeCCHH---HHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhhcccc
Q 002879 725 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHNFN 799 (871)
Q Consensus 725 ~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~~~~~ 799 (871)
++|.+|+-+.. -...++.+-+..|..+..+.+..+..+.+..-..+|+||+|- |+++- -+..+.+..+..
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLIDT--AGRs~~d~~l~eel~~l~~--- 290 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLIDT--VGMSQRDRNVSEQIAMLCG--- 290 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEEeC--CCCCccCHHHHHHHHHHhc---
Confidence 47877766643 124455555567877777778777655554445689999996 55322 124455554321
Q ss_pred ccccccccchhhhccCCCCCccEEEEccCCCHHHHH---HHHHc----CCCEEEeCCCC
Q 002879 800 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE---ECLRS----GMDGYVSKPFE 851 (871)
Q Consensus 800 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~---~~~~~----G~d~yl~KP~~ 851 (871)
...++-.++++.+....++.. +.++. +.+++|.-=+|
T Consensus 291 ---------------~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLD 334 (767)
T PRK14723 291 ---------------VGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLD 334 (767)
T ss_pred ---------------cCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccC
Confidence 112344578888877665554 33432 57777643333
No 400
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=25.35 E-value=1.8e+02 Score=28.88 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=41.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 781 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~ 781 (871)
+.+++|||+---......+...|.+.|+.|..+..-.+.+.... ...|+||.-..-|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l--~~aDiVIsat~~~~ 99 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT--KQADIVIVAVGKPG 99 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHH--hhCCEEEEcCCCCc
Confidence 56789999999988888888888889988777665544343221 24788887766553
No 401
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=88 Score=35.92 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=14.3
Q ss_pred EEEEEecCCCCChhhHh
Q 002879 476 IVSVEDTGQGIPLEAQS 492 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~ 492 (871)
.+.|.|+|+||..+++-
T Consensus 143 lLhi~DtGiGMT~edLi 159 (785)
T KOG0020|consen 143 LLHITDTGIGMTREDLI 159 (785)
T ss_pred eeeEecccCCccHHHHH
Confidence 58899999999988653
No 402
>PRK04302 triosephosphate isomerase; Provisional
Probab=25.18 E-value=7.7e+02 Score=25.45 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=25.7
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
++||++--+-...++..++++.|+|+++.-
T Consensus 173 ~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 173 DVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 579998877778899999999999999754
No 403
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=24.69 E-value=3.2e+02 Score=27.17 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=23.6
Q ss_pred cCCCCeEEEEeCCHHH---HHHHHHHHHHcCCEEEE
Q 002879 721 LLLGRKILIVDDNNVN---LKVAAAGLKRYGAAVVC 753 (871)
Q Consensus 721 ~~~~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~~ 753 (871)
...+++||||||--.. ...+...|++.|..|..
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~ 140 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAG 140 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEE
Confidence 3467899999997766 45566677777776543
No 404
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=24.57 E-value=45 Score=35.27 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=20.0
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 511 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 511 GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
.+||||+||++|++- .+.--.|++.+..
T Consensus 12 nSglGl~i~~RLl~~----------~De~~~ltl~ltc 39 (341)
T KOG1478|consen 12 NSGLGLAICKRLLAE----------DDENVRLTLCLTC 39 (341)
T ss_pred CCcccHHHHHHHHhc----------cCCceeEEEEEEe
Confidence 579999999999976 3333456666544
No 405
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=24.37 E-value=2.2e+02 Score=31.45 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHH----HHHcCC--CEEEe
Q 002879 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE----CLRSGM--DGYVS 847 (871)
Q Consensus 785 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~----~~~~G~--d~yl~ 847 (871)
-|+++.+++... ..++|-|+|+|.++.+...+ |.++|+ +|||.
T Consensus 227 ~eA~~~f~eq~~--------------------~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~ 275 (325)
T TIGR01232 227 EEAAQHFKDQDA--------------------ATHLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLC 275 (325)
T ss_pred HHHHHHHHHHhh--------------------ccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 478888886432 34799999999998776554 667898 79986
No 406
>PRK05637 anthranilate synthase component II; Provisional
Probab=24.27 E-value=1.4e+02 Score=30.84 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=37.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
++||++|-..-+-.-+...|++.|+.+..+.+.... +.+. ...||.|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~-~~l~-~~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPV-EEIL-AANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCH-HHHH-hcCCCEEEE
Confidence 479999998888888999999999999888775432 2222 235788876
No 407
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=24.20 E-value=5.3e+02 Score=25.91 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=51.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC--CEEEEEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g--~~v~~a~~g~eAl~~l~~-~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
.++.|+.+++..+..+..++...| |.|..+.+-+++++.++. ...+.|+..+...+. ....||+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~-----~~~~ir~ 98 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD-----VEPEIRE 98 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc-----hHHHHHH
Confidence 479999999999999999999987 679999999999998852 235778888887755 4455554
No 408
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=23.92 E-value=7.6e+02 Score=24.91 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCEEEEE-cCH----HHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHhhhcccccccc
Q 002879 736 NLKVAAAGLKRYGAAVVCV-ERG----KKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 736 n~~~l~~~L~~~g~~v~~a-~~g----~eAl~~l~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~ 803 (871)
+...+....+++|..+... .+. +++.... ....|+|-+. |+. .+.+..+++++.-
T Consensus 90 ~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~--~~g~d~v~~~---pg~~~~~~~~~~~~~i~~l~~~~-------- 156 (206)
T TIGR03128 90 TIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELK--ELGADYIGVH---TGLDEQAKGQNPFEDLQTILKLV-------- 156 (206)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHH--HcCCCEEEEc---CCcCcccCCCCCHHHHHHHHHhc--------
Confidence 3344556677789887654 233 3444443 2357888664 332 2344455555421
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHh
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVS 860 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~-----KP~~~~~L~~~l~ 860 (871)
. .+.|++++....+...+++++|+|.++. +.-++.+..+.++
T Consensus 157 --------------~-~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~ 203 (206)
T TIGR03128 157 --------------K-EARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203 (206)
T ss_pred --------------C-CCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHH
Confidence 1 2456667888889999999999997765 3334444444443
No 409
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=23.92 E-value=8e+02 Score=25.19 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 002879 224 LLAISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEA 270 (871)
Q Consensus 224 ~~~~~~~~~~l~~~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~~e~ 270 (871)
|..+..++.++++++++.++++..+. |...+........+.+++++.
T Consensus 49 ~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~ 100 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQ 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555554443 333344444444444443333
No 410
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=23.91 E-value=7.2e+02 Score=24.65 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002879 229 TSIGILVIASLVGHIFQATVN 249 (871)
Q Consensus 229 ~~~~~l~~~~l~~~~~~~~~~ 249 (871)
.++.++++++++.++++..+.
T Consensus 24 ~iInFliL~~lL~~~l~~pi~ 44 (173)
T PRK13453 24 TVLTFIVLLALLKKFAWGPLK 44 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445455544443
No 411
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=23.73 E-value=2.6e+02 Score=28.64 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCEEEEE--cCHHHHHHHhCCCCCccEEEEeCCCCC-----CCHHHHHHHHHhhhccccccccccccchh
Q 002879 738 KVAAAGLKRYGAAVVCV--ERGKKATELLMPPHQFDACFMDIQMPE-----MDGFEATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 738 ~~l~~~L~~~g~~v~~a--~~g~eAl~~l~~~~~~DlilmDi~MP~-----mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
.-....|++.|+.+..- ..+...++.+. ...||.|=+|..+.. ......++.|...-+
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~-~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~-------------- 199 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLK-RLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH-------------- 199 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHHH-hCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH--------------
Confidence 34555677889987764 45566666664 456999999965421 123445555544321
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHHHcCCC----EEEeCCCCH
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEA 852 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d----~yl~KP~~~ 852 (871)
...+++| .++-.+.++...+.+.|++ .|+.||.+.
T Consensus 200 ------~~~~~vi-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 200 ------SLGLKVV-AEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred ------HCCCeEE-EEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 1234444 6777888999999999996 467788764
No 412
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=23.60 E-value=5.1e+02 Score=22.85 Aligned_cols=7 Identities=0% Similarity=0.344 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 002879 238 SLVGHIF 244 (871)
Q Consensus 238 ~l~~~~~ 244 (871)
+++++.+
T Consensus 16 ~i~~y~~ 22 (87)
T PF10883_consen 16 LILAYLW 22 (87)
T ss_pred HHHHHHH
Confidence 3344443
No 413
>PLN02476 O-methyltransferase
Probab=23.56 E-value=2.7e+02 Score=30.18 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=41.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCE--EE-EEcCHHHHHHHhCC---CCCccEEEEeCC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQ 778 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eAl~~l~~---~~~~DlilmDi~ 778 (871)
.+|.=+|-++.....++..+++.|+. +. ...+..+.+..+.. ...||+||+|..
T Consensus 144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 36999999999999999999999874 33 34566666655421 257999999985
No 414
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.43 E-value=8.2e+02 Score=28.07 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCeEEEEeCC---HHHHHHHHHHHHH-c-CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCC-------CC-----H
Q 002879 724 GRKILIVDDN---NVNLKVAAAGLKR-Y-GAAVV--CVERGKKATELLMPPHQFDACFMDIQMPE-------MD-----G 784 (871)
Q Consensus 724 ~~~ILvVdDn---~~n~~~l~~~L~~-~-g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP~-------md-----G 784 (871)
|-.++++|-- .....-+-..+++ + +..+. -+.+.++|..+.. ...|.|..-+. |+ .+ -
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~--aGaD~I~vG~g-~Gs~c~tr~~~g~g~p~ 241 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS--VGADCLKVGIG-PGSICTTRIVAGVGVPQ 241 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH--cCCCEEEECCC-CCcCCcceeecCCCCCh
Confidence 4467777752 2222222333333 3 23333 3678888888773 35898875321 21 11 2
Q ss_pred HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 785 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+.++..+++.-. ...+|||+=-+-....+..+|+.+||+.++.
T Consensus 242 ltai~~v~~~~~--------------------~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 242 ITAICDVYEVCK--------------------NTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred HHHHHHHHHHHh--------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 444444444211 2358999999999999999999999997754
No 415
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.41 E-value=3.6e+02 Score=27.49 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=35.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
.|+|+|=.--|...+...|++.|+.+....+..+ + ..||.|++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~----l---~~~d~iii 43 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEE----I---LAADGVIL 43 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHH----h---ccCCEEEE
Confidence 3889999999999999999999999999877532 2 24899887
No 416
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.39 E-value=3e+02 Score=29.29 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=38.8
Q ss_pred cEEEEeCCCCC-CC--HHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHH-HcCCCEEE
Q 002879 771 DACFMDIQMPE-MD--GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL-RSGMDGYV 846 (871)
Q Consensus 771 DlilmDi~MP~-md--G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~-~~G~d~yl 846 (871)
.++++|+.--+ +. -+++++++++. ..+|||+--+-.+.++..+++ +.|+++.+
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~-----------------------~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA-----------------------LKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh-----------------------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 46777664321 12 25677777752 368999999889999999999 79999775
Q ss_pred e
Q 002879 847 S 847 (871)
Q Consensus 847 ~ 847 (871)
.
T Consensus 225 v 225 (258)
T PRK01033 225 A 225 (258)
T ss_pred E
Confidence 3
No 417
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=23.31 E-value=4.2e+02 Score=30.12 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=42.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEE--EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHH-HHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAV--VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI-IRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v--~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~-IR~ 793 (871)
.+|..+|=|+...+.++.-++..|..- ....|..+.+.. ...||+|++|- |+. +.+++.. |+.
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP--~Gs-~~~~l~~al~~ 147 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDP--FGS-PAPFLDSAIRS 147 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECC--CCC-cHHHHHHHHHH
Confidence 479999999999999999888777642 233344333321 34699999996 543 4455555 554
No 418
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=23.23 E-value=7.1e+02 Score=24.34 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 225 LAISTSIGILVIASLVGHIFQATVNR 250 (871)
Q Consensus 225 ~~~~~~~~~l~~~~l~~~~~~~~~~r 250 (871)
..+..++-++++++++.++++..+..
T Consensus 10 ~~~~~~inflil~~lL~~fl~kpi~~ 35 (164)
T PRK14473 10 LLIAQLINFLLLIFLLRTFLYRPVLN 35 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555565666555443
No 419
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=23.16 E-value=5.4e+02 Score=22.91 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 002879 268 AEAADVAKSQFLATVSHE 285 (871)
Q Consensus 268 ~e~a~~aks~fla~iSHE 285 (871)
..+..+.|..|..+|-..
T Consensus 63 ~rES~~Er~K~~~s~~~~ 80 (121)
T PF10669_consen 63 NRESKRERQKFIWSMNKQ 80 (121)
T ss_pred hhhhHHHHHhHHhhhhHH
Confidence 334455677788777543
No 420
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=23.06 E-value=3.1e+02 Score=29.65 Aligned_cols=71 Identities=21% Similarity=0.104 Sum_probs=47.1
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCC
Q 002879 751 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 830 (871)
Q Consensus 751 v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 830 (871)
-+.+.+-+||.+.+. ...|.|.+|-.-|. +=-++.+.+|. ..+++|+++ ++...
T Consensus 187 gVev~t~eea~~A~~--~gaD~I~ld~~~p~-~l~~~~~~~~~----------------------~~~~i~i~A-sGGI~ 240 (272)
T cd01573 187 VVEVDSLEEALAAAE--AGADILQLDKFSPE-ELAELVPKLRS----------------------LAPPVLLAA-AGGIN 240 (272)
T ss_pred EEEcCCHHHHHHHHH--cCCCEEEECCCCHH-HHHHHHHHHhc----------------------cCCCceEEE-ECCCC
Confidence 456788899888763 46899999965553 11122333332 123577665 55678
Q ss_pred HHHHHHHHHcCCCEEEe
Q 002879 831 QATYEECLRSGMDGYVS 847 (871)
Q Consensus 831 ~~~~~~~~~~G~d~yl~ 847 (871)
.+...+..++|+|.+..
T Consensus 241 ~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 241 IENAAAYAAAGADILVT 257 (272)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 89999999999998753
No 421
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=23.02 E-value=2.2e+02 Score=25.51 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=39.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC--EE-EEEcCHHHHHHHhCCCCCccEEEEeCCC
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA--AV-VCVERGKKATELLMPPHQFDACFMDIQM 779 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v-~~a~~g~eAl~~l~~~~~~DlilmDi~M 779 (871)
.++.-+|=|+.....++..+...+. .+ ....|..+..+.+ ....||+|++|.-.
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-PDGKFDLIVTNPPY 80 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-TTT-EEEEEE--ST
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-cCceeEEEEECCCC
Confidence 5899999999999999999998875 23 3455666655444 45789999998744
No 422
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=22.91 E-value=1.9e+02 Score=31.51 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=49.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC--CE----EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG--AA----VVCVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g--~~----v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~md-----G~e~~~~IR~ 793 (871)
.+|-+||=|+...++.++.|.... .. -....||.+-++... +.||+|++|..=|..- --++.+.+++
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~--~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~ 178 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE--EKFDVIIVDSTDPVGPAEALFTEEFYEGCRR 178 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC--CcCCEEEEcCCCCCCcccccCCHHHHHHHHH
Confidence 489999999999999999997643 32 345788988888653 4799999999988421 2355555554
No 423
>PRK07695 transcriptional regulator TenI; Provisional
Probab=22.83 E-value=4.5e+02 Score=26.65 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=42.2
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCC-----C--CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEc
Q 002879 754 VERGKKATELLMPPHQFDACFMDIQMP-----E--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 826 (871)
Q Consensus 754 a~~g~eAl~~l~~~~~~DlilmDi~MP-----~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 826 (871)
+.+.+++.+.. ....|.|+..-..| + ..|++.++.+++. .++||+++-
T Consensus 102 ~~s~e~a~~a~--~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-----------------------~~ipvia~G 156 (201)
T PRK07695 102 VHSLEEAIQAE--KNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA-----------------------LSIPVIAIG 156 (201)
T ss_pred CCCHHHHHHHH--HcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-----------------------CCCCEEEEc
Confidence 34555554443 23567776543221 1 2367777777652 258999776
Q ss_pred cCCCHHHHHHHHHcCCCEE
Q 002879 827 ADVIQATYEECLRSGMDGY 845 (871)
Q Consensus 827 a~~~~~~~~~~~~~G~d~y 845 (871)
+- ..++..+++++|++++
T Consensus 157 GI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 157 GI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CC-CHHHHHHHHHcCCCEE
Confidence 55 8889999999999987
No 424
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=22.75 E-value=8.4e+02 Score=26.99 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.1
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+|||+--+-....+..+++.+|++..+.
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 58999877777889999999999998776
No 425
>PRK04457 spermidine synthase; Provisional
Probab=22.67 E-value=4.5e+02 Score=28.07 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=45.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC--CEEE-EEcCHHHHHHHhCCCCCccEEEEeCC----CCC-CCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYG--AAVV-CVERGKKATELLMPPHQFDACFMDIQ----MPE-MDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g--~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~----MP~-mdG~e~~~~IR~ 793 (871)
+.+|.+||=++.....++..+...+ -.+. ...|+.+.+... +..||+|++|.- ||. +.--++.+.+++
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--RHSTDVILVDGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--CCCCCEEEEeCCCCCCCccccCcHHHHHHHHH
Confidence 3579999999999999998876432 2333 457888777654 357999999962 221 122466666655
No 426
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=22.63 E-value=2.4e+02 Score=30.45 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=40.0
Q ss_pred cCCCCeEEEEeCCHHH---HHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEe
Q 002879 721 LLLGRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 776 (871)
Q Consensus 721 ~~~~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmD 776 (871)
.+.+++||||-|.+-. .+.++..++++....+-+..+.+.+... ..+|++|+=|
T Consensus 177 ~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdGaAD~l~~~--GykP~lIvGd 233 (395)
T COG4825 177 DLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRKA--GYKPQLIVGD 233 (395)
T ss_pred hhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccchHHHHHHc--CCCcceeecC
Confidence 4568899999988754 4667778888876666666666666543 5689999977
No 427
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=22.55 E-value=3.8e+02 Score=27.88 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=42.8
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 770 FDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 770 ~DlilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
.-+|++|+.--++ .| +++++++++. ..+|+|+--+-...++..++.++|+++.+
T Consensus 155 ~~ii~tdI~~dGt~~G~d~eli~~i~~~-----------------------~~~pvia~GGi~s~ed~~~l~~~Ga~~vi 211 (221)
T TIGR00734 155 YGLIVLDIHSVGTMKGPNLELLTKTLEL-----------------------SEHPVMLGGGISGVEDLELLKEMGVSAVL 211 (221)
T ss_pred CEEEEEECCccccCCCCCHHHHHHHHhh-----------------------CCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 3688999976433 33 6788888762 35899998888889999999999999987
Q ss_pred e
Q 002879 847 S 847 (871)
Q Consensus 847 ~ 847 (871)
.
T Consensus 212 v 212 (221)
T TIGR00734 212 V 212 (221)
T ss_pred E
Confidence 5
No 428
>PRK10037 cell division protein; Provisional
Probab=22.52 E-value=3.5e+02 Score=28.42 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=10.3
Q ss_pred CCCeEEEEeCCHH
Q 002879 723 LGRKILIVDDNNV 735 (871)
Q Consensus 723 ~~~~ILvVdDn~~ 735 (871)
.|+||||||-++-
T Consensus 29 ~G~rVLlID~D~q 41 (250)
T PRK10037 29 LGENVLVIDACPD 41 (250)
T ss_pred cCCcEEEEeCChh
Confidence 3679999988874
No 429
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.43 E-value=2.3e+02 Score=29.87 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCccEEEEc-----cCCCHHHHHHHHHcCCCEEEeC--CCC
Q 002879 818 FHVPILAMT-----ADVIQATYEECLRSGMDGYVSK--PFE 851 (871)
Q Consensus 818 ~~~pIIalT-----a~~~~~~~~~~~~~G~d~yl~K--P~~ 851 (871)
.++|++.|| .........+|.++|+|+++.- |++
T Consensus 73 ~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e 113 (244)
T PRK13125 73 VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLID 113 (244)
T ss_pred CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCC
Confidence 367887664 2233445778999999999986 454
No 430
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=22.33 E-value=1e+02 Score=31.15 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=36.3
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEe
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 776 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmD 776 (871)
|||||...-.-.-+..+|++.|+.+..+.+....++.+. ...||.|++-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID-ALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCEEEEc
Confidence 899999988888899999999999988877642233332 2358887763
No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.29 E-value=7.2e+02 Score=28.80 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=37.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHH----HcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeCCCCCCCHH--HHHHH
Q 002879 724 GRKILIVDDNNVNLKVAAAGLK----RYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDGF--EATKI 790 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~----~~g~~v~~a~~g-------~eAl~~l~~~~~~DlilmDi~MP~mdG~--e~~~~ 790 (871)
|++|++|+-++ .|-.+...|+ +.+..+....++ .++++.+. ...||+||.|.- +.... +..++
T Consensus 128 G~kV~lV~~D~-~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~-~~~~DvViIDTa--Gr~~~d~~lm~E 203 (429)
T TIGR01425 128 GFKPCLVCADT-FRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK-KENFDIIIVDTS--GRHKQEDSLFEE 203 (429)
T ss_pred CCCEEEEcCcc-cchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH-hCCCCEEEEECC--CCCcchHHHHHH
Confidence 56899888775 3334444444 345555544332 24555553 357999999983 33322 34555
Q ss_pred HHhh
Q 002879 791 IREM 794 (871)
Q Consensus 791 IR~~ 794 (871)
+++.
T Consensus 204 l~~i 207 (429)
T TIGR01425 204 MLQV 207 (429)
T ss_pred HHHH
Confidence 5553
No 432
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=22.21 E-value=3.8e+02 Score=27.43 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCC---C--HHHHHHHHHhhhccccccccccccchhh
Q 002879 739 VAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEM---D--GFEATKIIREMEHNFNNRIRRGEVSIEA 811 (871)
Q Consensus 739 ~l~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi~MP~m---d--G~e~~~~IR~~~~~~~~~~~~g~~~~~~ 811 (871)
.....|++.|+.+.. +..|..-+..+. ..++|.|=+|..+-.. + ...+++.|...-+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~-~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~--------------- 200 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLK-RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQ--------------- 200 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHH-hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHH---------------
Confidence 455677889988765 445566666664 4579999999754211 1 2344555544321
Q ss_pred hccCCCCCccEEEEccCCCHHHHHHHHHcCCC----EEEeCCCCHH
Q 002879 812 YENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAE 853 (871)
Q Consensus 812 ~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d----~yl~KP~~~~ 853 (871)
...+.+| .++-.+.++...+.+.|++ .|+.||...+
T Consensus 201 -----~~~~~vi-a~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 201 -----KLGLQVV-AEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred -----HCCCeEE-EecCCCHHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 1234444 5677788899999999997 4578887643
No 433
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.11 E-value=5.9e+02 Score=26.52 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=50.7
Q ss_pred CHHHHHHHhCCCCCcc-EEEEeCCC---CCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCH
Q 002879 756 RGKKATELLMPPHQFD-ACFMDIQM---PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 831 (871)
Q Consensus 756 ~g~eAl~~l~~~~~~D-lilmDi~M---P~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~ 831 (871)
+..+..+.+. ...+| +++.|+.. ...-.++.++++++. ..+||++--+-.+.
T Consensus 150 ~~~~~~~~~~-~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~iPvia~GGI~~~ 205 (241)
T PRK13585 150 TPVEAAKRFE-ELGAGSILFTNVDVEGLLEGVNTEPVKELVDS-----------------------VDIPVIASGGVTTL 205 (241)
T ss_pred CHHHHHHHHH-HcCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCH
Confidence 3344444443 23455 45556532 122346778888752 25899998888878
Q ss_pred HHHHHHHHcCCCEEE------eCCCCHHHHHHH
Q 002879 832 ATYEECLRSGMDGYV------SKPFEAEQLYRE 858 (871)
Q Consensus 832 ~~~~~~~~~G~d~yl------~KP~~~~~L~~~ 858 (871)
++..++.++|+++.+ ..|+..+++...
T Consensus 206 ~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 206 DDLRALKEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred HHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 999999999999875 466666665544
No 434
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=22.00 E-value=54 Score=33.75 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=16.0
Q ss_pred CCCcccccHHHHHHHHHH
Q 002879 508 THGGTGIGLSISKYLVGR 525 (871)
Q Consensus 508 ~~~GtGLGLsI~k~lv~~ 525 (871)
..|++|+||..+|++.++
T Consensus 11 TGG~sGIGl~lak~f~el 28 (245)
T COG3967 11 TGGASGIGLALAKRFLEL 28 (245)
T ss_pred eCCcchhhHHHHHHHHHh
Confidence 357899999999999987
No 435
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=21.86 E-value=2.4e+02 Score=25.81 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHHHHHHcCCEEEEEcCH-----HHHHHHhCCC-CCccEEEE--eCCC---CCCCHHHHHHHH
Q 002879 740 AAAGLKRYGAAVVCVERG-----KKATELLMPP-HQFDACFM--DIQM---PEMDGFEATKII 791 (871)
Q Consensus 740 l~~~L~~~g~~v~~a~~g-----~eAl~~l~~~-~~~Dlilm--Di~M---P~mdG~e~~~~I 791 (871)
...+|++.|..+..+..+ .+..+++. . +.+|+|+- |-.. ..-||+.+.|.-
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~-~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A 95 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHEDGEPTVDAAIA-EKGKFDVVINLRDPRRDRCTDEDGTALLRLA 95 (112)
T ss_pred HHHHHHHcCCceEEEEecCCCCCcHHHHHHh-CCCCEEEEEEcCCCCcccccCCChHHHHHHH
Confidence 345677788887776442 45777774 6 78999876 4333 466788654443
No 436
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=21.77 E-value=5.1e+02 Score=32.18 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=38.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
..+++|||||-..-+-..+...|++.|+.+..+.+... .+... ...||.|++
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~-~~~~~-~~~~DgLIL 565 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA-EAAFD-ERRPDLVVL 565 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC-hhhhh-hcCCCEEEE
Confidence 45789999998877888999999999999988765421 12221 235888766
No 437
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=21.73 E-value=7.1e+02 Score=23.81 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002879 227 ISTSIGILVIASLVGHIFQATVN 249 (871)
Q Consensus 227 ~~~~~~~l~~~~l~~~~~~~~~~ 249 (871)
+..++.++++.+++..+++..+.
T Consensus 11 ~~qli~Flil~~~l~kfl~kPi~ 33 (141)
T PRK08476 11 LATFVVFLLLIVILNSWLYKPLL 33 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555443
No 438
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=21.66 E-value=6.7e+02 Score=29.18 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=61.3
Q ss_pred CCeEEEEeC---CHHHHHHHHHHHHHc--CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCC------------CCH
Q 002879 724 GRKILIVDD---NNVNLKVAAAGLKRY--GAAVV--CVERGKKATELLMPPHQFDACFMDIQMPE------------MDG 784 (871)
Q Consensus 724 ~~~ILvVdD---n~~n~~~l~~~L~~~--g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP~------------mdG 784 (871)
+..+++||- +..+..-.-..+++. ...|. .+.+.++|..+.. ...|.|-.-+ -|+ .-.
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~-g~G~~~~t~~~~~~g~p~ 312 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGI-GPGSICTTRIVAGVGVPQ 312 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECC-CCCcCCccceecCCCccH
Confidence 456888887 544443333444433 23333 3677788877763 4578874432 121 112
Q ss_pred HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 785 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+.++..+++.-. ...+|||+--+-....+..+|+.+||+..+.
T Consensus 313 ~~~i~~~~~~~~--------------------~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 313 ITAVYDVAEYAA--------------------QSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred HHHHHHHHHHHh--------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 345555544211 2358999988888999999999999997653
No 439
>PRK12704 phosphodiesterase; Provisional
Probab=21.66 E-value=73 Score=37.82 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=36.5
Q ss_pred cEEEEccCCCHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 821 PILAMTADVIQA--TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 821 pIIalTa~~~~~--~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+|++|+.+... ....+++.|+.|+..||+..+++...+++-+
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 377889877665 8889999999999999999999998887643
No 440
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.56 E-value=5e+02 Score=31.02 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=34.8
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH
Q 002879 724 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 784 (871)
Q Consensus 724 ~~~ILvVdDn~~n---~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG 784 (871)
+++|.+++-+..- ...++.+-...|+.+..+.+..+..+.+..-..+|+||+|. |++..
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDT--aG~s~ 441 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDT--AGMGQ 441 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecC--CCcch
Confidence 3578888755411 22233333445677777777665555553334699999997 45443
No 441
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.50 E-value=8e+02 Score=24.30 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 002879 233 ILVIASLVGHIFQATV 248 (871)
Q Consensus 233 ~l~~~~l~~~~~~~~~ 248 (871)
++++++++.++++..+
T Consensus 28 Flil~~lL~~~l~kpi 43 (175)
T PRK14472 28 FVIVLLILKKIAWGPI 43 (175)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 3333444444444333
No 442
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=21.28 E-value=2e+02 Score=30.30 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=20.5
Q ss_pred eEEecHHHHHHHHHHHHHHhhccCCC
Q 002879 383 TLIGDPGRFRQIITNLMGNSIKFTEK 408 (871)
Q Consensus 383 ~v~~D~~rl~qIl~NLl~NAiKfT~~ 408 (871)
.+.|||.|..+|-. |++|+-+-.+.
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~ 45 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASN 45 (248)
T ss_pred EecCCHHHHHHHHH-Hhccchhhhhc
Confidence 45699999999888 99999886643
No 443
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.17 E-value=1.2e+02 Score=33.05 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=38.0
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHhhhCCC
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGY------VSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~y------l~KP~~~~~L~~~l~~~~~~ 865 (871)
.+|||+.-.-.+.++..+++.+|+|.. +.-|.-..++.+-+.+|+..
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~ 283 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDE 283 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHH
Confidence 589999998889999999999999854 44576677777777777653
No 444
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.14 E-value=7.2e+02 Score=28.45 Aligned_cols=108 Identities=10% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHHcCCEEEEEcCHHHHHH---HhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhh
Q 002879 724 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATE---LLMPPHQFDACFMDIQMPEMDG--FEATKIIREME 795 (871)
Q Consensus 724 ~~~ILvVdDn~~---n~~~l~~~L~~~g~~v~~a~~g~eAl~---~l~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~ 795 (871)
+++|.+|+-++. -...++..-+..|+.+..+.+..+..+ .+.....+|+||+|. |+.+- -+....++.+.
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT--AGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT--VGRNYLAEESVSEISAYT 311 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC--CCCCccCHHHHHHHHHHh
Confidence 467888877653 123344444556777776777655433 332124589999998 44322 23344444432
Q ss_pred ccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHH----HcCCCEEEeCCCC
Q 002879 796 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 851 (871)
Q Consensus 796 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~----~~G~d~yl~KP~~ 851 (871)
. ...++..++++++.....+..+++ ..|.+++|.==+|
T Consensus 312 ~------------------~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLD 353 (407)
T PRK12726 312 D------------------VVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMD 353 (407)
T ss_pred h------------------ccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEccc
Confidence 1 112344466777766666665554 3567777654443
No 445
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.01 E-value=6.7e+02 Score=23.18 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=51.1
Q ss_pred CccEEEEeCCCCC---CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEE
Q 002879 769 QFDACFMDIQMPE---MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 845 (871)
Q Consensus 769 ~~DlilmDi~MP~---mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~y 845 (871)
..++|-+ +.|. .-||...+.||+... .. --|=-+++...+...-...||+|.|
T Consensus 19 ~l~lI~i--~FP~F~DGRgfS~ArlLR~r~g---------------------y~-GelRA~Gdvl~DQl~~l~R~GFdsf 74 (110)
T PF06073_consen 19 RLPLIAI--DFPKFTDGRGFSQARLLRERYG---------------------YT-GELRAVGDVLRDQLFYLRRCGFDSF 74 (110)
T ss_pred CCCEEEE--ECCCcCCchHhHHHHHHHHHcC---------------------CC-CcEEEeccchHHHHHHHHHcCCCEE
Confidence 3566654 4574 357999999995321 11 1244588899999999999999999
Q ss_pred EeCC-CCHHHHHHHHhhhC
Q 002879 846 VSKP-FEAEQLYREVSRFF 863 (871)
Q Consensus 846 l~KP-~~~~~L~~~l~~~~ 863 (871)
..+. -+.+.....+..|-
T Consensus 75 ~l~~~~~~~~~~~~l~~fs 93 (110)
T PF06073_consen 75 ELREDQDPEDALAALSDFS 93 (110)
T ss_pred EeCCCCCHHHHHHHHhhCC
Confidence 8885 78888888777653
No 446
>PRK10060 RNase II stability modulator; Provisional
Probab=20.93 E-value=6.2e+02 Score=31.02 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCC----C-CCCHHHHHHHHHhhhccccccccccccch
Q 002879 737 LKVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQM----P-EMDGFEATKIIREMEHNFNNRIRRGEVSI 809 (871)
Q Consensus 737 ~~~l~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi~M----P-~mdG~e~~~~IR~~~~~~~~~~~~g~~~~ 809 (871)
.......|++.|+.+.. +..|-.-+..+. .-++|.|=+|-.. . ......+++.|-.+-+.
T Consensus 543 ~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~-~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~------------ 609 (663)
T PRK10060 543 ALSVIQQFSQLGAQVHLDDFGTGYSSLSQLA-RFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQA------------ 609 (663)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhHHHHH-hCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHH------------
Confidence 34445778889998776 567778888885 5679999988522 2 22344555555443221
Q ss_pred hhhccCCCCCccEEEEccCCCHHHHHHHHHcCCC----EEEeCCCCHHHHHHHHhhhCCC
Q 002879 810 EAYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 810 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d----~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
-.+.+|| .+-.+.+....+.+.|+| .|+.||...+++...+.++...
T Consensus 610 --------lg~~viA-eGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~~~ 660 (663)
T PRK10060 610 --------LNLQVIA-EGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYLKR 660 (663)
T ss_pred --------CCCcEEE-ecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhhhc
Confidence 1345553 566677788888899997 4588999999999888877543
No 447
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.82 E-value=8.7e+02 Score=24.45 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHHHHHHHHHHHhhcCCE
Q 002879 292 GVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 371 (871)
Q Consensus 292 ~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~ 371 (871)
+|...+|+|.+...++ .++-++.|..|++..... |.|.|+--|.--- ...++..++-.-+-.. .....++
T Consensus 3 AI~NGLELL~~~~~~~-~~~~~~LI~~Sa~~A~aR----l~F~RlAFGaag~-~~~i~~~e~~~~~~~~----~~~~r~~ 72 (182)
T PF10090_consen 3 AINNGLELLDDEGDPE-MRPAMELIRESARNASAR----LRFFRLAFGAAGS-GQQIDLGEARSVLRGY----FAGGRIT 72 (182)
T ss_pred chhhhHHHHcCCCCcc-chHHHHHHHHHHHHHHHH----HHHHHHHcCCCCC-CCCCCHHHHHHHHHHH----HhCCceE
Confidence 5677789887765422 233678888887776654 3566765554432 3456766543333333 3334566
Q ss_pred EEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEE
Q 002879 372 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTV 415 (871)
Q Consensus 372 l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v 415 (871)
+...++... .+ ...-+++.||+-=|....+. |.|.|.+
T Consensus 73 l~W~~~~~~-----~~-k~~vklllnl~l~a~~alprGG~i~V~~ 111 (182)
T PF10090_consen 73 LDWQVERDL-----LP-KPEVKLLLNLLLCAEDALPRGGEITVSI 111 (182)
T ss_pred EEccCcccc-----CC-HHHHHHHHHHHHHHHhhcCCCCEEEEEE
Confidence 655444331 12 23448999999888888776 5566654
No 448
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.69 E-value=4.5e+02 Score=28.45 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=48.0
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC
Q 002879 750 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 829 (871)
Q Consensus 750 ~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 829 (871)
.-+.+.+.+|+.+.+. ..+|+|.+|-. |.|-++++.++. .+++|+.+ ++..
T Consensus 192 I~VEv~tleea~eA~~--~gaD~I~LD~~-----~~e~l~~~v~~~---------------------~~~i~leA-sGGI 242 (277)
T PRK05742 192 VEVEVESLDELRQALA--AGADIVMLDEL-----SLDDMREAVRLT---------------------AGRAKLEA-SGGI 242 (277)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEECCC-----CHHHHHHHHHHh---------------------CCCCcEEE-ECCC
Confidence 3445788999888873 45899999843 455566555421 12567665 5567
Q ss_pred CHHHHHHHHHcCCCEEEe
Q 002879 830 IQATYEECLRSGMDGYVS 847 (871)
Q Consensus 830 ~~~~~~~~~~~G~d~yl~ 847 (871)
..+...++.++|+|.+-+
T Consensus 243 t~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 243 NESTLRVIAETGVDYISI 260 (277)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 888899999999997654
No 449
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.66 E-value=98 Score=33.18 Aligned_cols=48 Identities=31% Similarity=0.445 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCC------CHHHHHHHHHcCCCEEEeCCCCHH
Q 002879 784 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAE 853 (871)
Q Consensus 784 G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~------~~~~~~~~~~~G~d~yl~KP~~~~ 853 (871)
.++++++||+. ...+|||+||=.. .+....+|-++|+|+.|.--+..+
T Consensus 74 ~~~~~~~ir~~----------------------~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~e 127 (259)
T PF00290_consen 74 IFELVKEIRKK----------------------EPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPE 127 (259)
T ss_dssp HHHHHHHHHHH----------------------CTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGG
T ss_pred HHHHHHHHhcc----------------------CCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChH
Confidence 47788888842 3478999998643 345677889999999998755443
No 450
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=20.41 E-value=71 Score=22.05 Aligned_cols=11 Identities=45% Similarity=0.872 Sum_probs=9.7
Q ss_pred eEEEEEEecCC
Q 002879 474 NLIVSVEDTGQ 484 (871)
Q Consensus 474 ~l~i~V~DtG~ 484 (871)
+..|+|+|+|+
T Consensus 13 n~qITIeD~GP 23 (30)
T PF07492_consen 13 NFQITIEDTGP 23 (30)
T ss_pred CcEEEEecCCC
Confidence 56899999997
No 451
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.39 E-value=6.1e+02 Score=26.47 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=56.0
Q ss_pred cCHHHHHHHhCCCCCcc-EEEEeCC-CCCC--CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCC
Q 002879 755 ERGKKATELLMPPHQFD-ACFMDIQ-MPEM--DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 830 (871)
Q Consensus 755 ~~g~eAl~~l~~~~~~D-lilmDi~-MP~m--dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 830 (871)
.+..+..+.+.. . +| +++.|+. +-.. .-++++++|++. ..+||++=-+-.+
T Consensus 30 ~dp~~~a~~~~~-~-~~~l~ivDldga~~g~~~n~~~i~~i~~~-----------------------~~~pv~~gGGIrs 84 (228)
T PRK04128 30 GDPVEIALRFSE-Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE-----------------------TGLKVQVGGGLRT 84 (228)
T ss_pred CCHHHHHHHHHH-h-CCEEEEEECcchhcCCcchHHHHHHHHhh-----------------------CCCCEEEcCCCCC
Confidence 366666666643 3 55 7778886 3211 357888888752 3578887667778
Q ss_pred HHHHHHHHHcCCCEEEe--CCCCHHHHHHHHhhh
Q 002879 831 QATYEECLRSGMDGYVS--KPFEAEQLYREVSRF 862 (871)
Q Consensus 831 ~~~~~~~~~~G~d~yl~--KP~~~~~L~~~l~~~ 862 (871)
.++.+++++.|++..+. .-++++-+.+..++|
T Consensus 85 ~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~ 118 (228)
T PRK04128 85 YESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEF 118 (228)
T ss_pred HHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHc
Confidence 89999999999998775 345666555555555
No 452
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=20.01 E-value=1e+03 Score=25.72 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=39.7
Q ss_pred CeE-EEEeCCHH---HHHHHHHHHHHcCCEEEEE-------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 725 RKI-LIVDDNNV---NLKVAAAGLKRYGAAVVCV-------ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 725 ~~I-LvVdDn~~---n~~~l~~~L~~~g~~v~~a-------~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
++| +|.+|++. ....+...+++.|.+|... .|-...+..++ ...+|+|++... ..+...+++.+++
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~-~~~~d~i~~~~~--~~~~~~~~~~~~~ 218 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAK-AAGPDAVVVAGH--FPDAVLLVRQMKE 218 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHH-hcCCCEEEECCc--chhHHHHHHHHHH
Confidence 344 44444433 3455667788889887632 23344555554 356999998653 3456667777765
No 453
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=20.01 E-value=1.7e+02 Score=29.00 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=40.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 782 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~m 782 (871)
+.||+++||-.....-+-+..+|.+.|+.|+.+..-.+-++... ..-|+|+.-.--|.+
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~--~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT--RRADIVVSAVGKPNL 92 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH--TTSSEEEE-SSSTT-
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee--eeccEEeeeeccccc
Confidence 56899999999999999999999999999998765433332221 246999988877766
Done!