Query 002879
Match_columns 871
No_of_seqs 727 out of 4480
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 05:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 6.1E-40 2.1E-44 349.4 31.9 232 266-550 11-249 (258)
2 3t4l_A Histidine kinase 4; PAS 100.0 3E-38 1E-42 336.4 19.2 211 2-220 58-270 (270)
3 4ew8_A Sensor protein DIVL; si 100.0 8.4E-35 2.9E-39 310.9 32.1 231 261-551 26-258 (268)
4 1gkz_A [3-methyl-2-oxobutanoat 100.0 1E-34 3.4E-39 328.2 24.2 227 270-551 116-375 (388)
5 2btz_A Pyruvate dehydrogenase 100.0 1.3E-34 4.5E-39 327.9 23.7 219 277-550 97-351 (394)
6 2e0a_A Pyruvate dehydrogenase 100.0 3E-34 1E-38 324.9 24.7 219 276-550 96-351 (394)
7 3jz3_A Sensor protein QSEC; he 100.0 1.3E-35 4.6E-40 307.4 12.5 215 275-550 2-218 (222)
8 2q8g_A [pyruvate dehydrogenase 100.0 1.1E-33 3.6E-38 321.8 25.7 217 278-549 108-363 (407)
9 1y8o_A [pyruvate dehydrogenase 100.0 4.9E-33 1.7E-37 317.3 22.7 220 275-550 118-375 (419)
10 3a0r_A Sensor protein; four he 100.0 2.7E-32 9.2E-37 302.5 25.9 214 273-550 130-346 (349)
11 3d36_A Sporulation kinase B; G 100.0 1.9E-32 6.5E-37 287.9 23.2 215 272-551 11-227 (244)
12 4fpp_A Phosphotransferase; fou 100.0 1.6E-31 5.5E-36 283.0 23.7 195 278-547 49-246 (247)
13 1b3q_A Protein (chemotaxis pro 100.0 6.7E-28 2.3E-32 270.9 19.5 203 272-550 7-249 (379)
14 3to5_A CHEY homolog; alpha(5)b 99.9 3.9E-26 1.3E-30 217.5 15.9 121 724-865 12-133 (134)
15 3ehh_A Sensor kinase (YOCF pro 99.9 1.9E-24 6.5E-29 223.3 20.8 190 272-549 25-216 (218)
16 1id0_A PHOQ histidine kinase; 99.9 2.5E-24 8.6E-29 209.3 19.0 145 346-550 2-146 (152)
17 1ysr_A Sensor-type histidine k 99.9 2.2E-24 7.6E-29 209.4 17.5 146 344-549 4-149 (150)
18 3sl2_A Sensor histidine kinase 99.9 6.5E-24 2.2E-28 212.3 17.7 153 347-552 2-155 (177)
19 3a0y_A Sensor protein; ATP-LID 99.9 2E-23 6.8E-28 202.6 20.0 146 344-550 2-149 (152)
20 3mm4_A Histidine kinase homolo 99.9 4.1E-24 1.4E-28 219.6 15.6 123 724-866 61-197 (206)
21 1bxd_A ENVZ(290-450), protein 99.9 1.1E-23 3.8E-28 207.1 17.0 149 342-551 4-152 (161)
22 1r62_A Nitrogen regulation pro 99.9 2.1E-23 7.1E-28 204.1 16.2 156 342-549 2-159 (160)
23 2ayx_A Sensor kinase protein R 99.9 5.8E-22 2E-26 210.4 26.8 239 572-864 7-246 (254)
24 3luf_A Two-component system re 99.9 2.4E-22 8.3E-27 214.0 22.5 237 577-864 5-244 (259)
25 1i58_A Chemotaxis protein CHEA 99.9 6.5E-23 2.2E-27 207.3 14.0 149 346-548 3-188 (189)
26 2lpm_A Two-component response 99.9 1.5E-23 5.2E-28 196.1 2.5 114 724-865 8-122 (123)
27 3gl9_A Response regulator; bet 99.9 1.1E-20 3.7E-25 176.6 17.6 119 725-864 3-121 (122)
28 3f6p_A Transcriptional regulat 99.8 5.8E-20 2E-24 170.9 15.8 116 725-864 3-118 (120)
29 3t6k_A Response regulator rece 99.8 4.8E-20 1.7E-24 175.6 15.3 121 724-865 4-124 (136)
30 2r25_B Osmosensing histidine p 99.8 9.9E-20 3.4E-24 172.7 17.1 121 725-866 3-128 (133)
31 3h1g_A Chemotaxis protein CHEY 99.8 9.4E-20 3.2E-24 171.7 15.9 122 724-865 5-127 (129)
32 3n0r_A Response regulator; sig 99.8 3.8E-21 1.3E-25 207.6 7.0 117 724-866 160-278 (286)
33 3ehg_A Sensor kinase (YOCF pro 99.8 8.4E-20 2.9E-24 172.5 13.7 125 348-549 2-126 (128)
34 3m6m_D Sensory/regulatory prot 99.8 1.7E-19 5.7E-24 173.5 16.0 124 724-866 14-137 (143)
35 3zxo_A Redox sensor histidine 99.8 2.6E-19 8.8E-24 168.9 15.7 125 346-549 3-128 (129)
36 3rqi_A Response regulator prot 99.8 2E-19 6.8E-24 180.9 13.9 117 724-863 7-123 (184)
37 1dbw_A Transcriptional regulat 99.8 3.2E-18 1.1E-22 160.2 17.9 119 724-865 3-121 (126)
38 3gt7_A Sensor protein; structu 99.8 2.7E-18 9.2E-23 167.1 17.0 120 724-864 7-126 (154)
39 1srr_A SPO0F, sporulation resp 99.8 2.3E-18 7.9E-23 160.5 15.5 118 725-865 4-121 (124)
40 1mb3_A Cell division response 99.8 1.6E-18 5.6E-23 161.2 14.4 120 725-865 2-121 (124)
41 3eod_A Protein HNR; response r 99.8 2.8E-18 9.7E-23 161.3 15.6 121 723-866 6-127 (130)
42 3lua_A Response regulator rece 99.8 1.8E-18 6.1E-23 165.1 14.1 123 724-866 4-128 (140)
43 3zxq_A Hypoxia sensor histidin 99.8 4.7E-18 1.6E-22 159.1 16.3 122 349-549 2-123 (124)
44 3crn_A Response regulator rece 99.8 3.9E-18 1.3E-22 161.2 15.5 116 725-863 4-119 (132)
45 1tmy_A CHEY protein, TMY; chem 99.8 4E-18 1.4E-22 157.8 15.1 116 725-863 3-119 (120)
46 3hdv_A Response regulator; PSI 99.8 4.2E-18 1.4E-22 161.5 15.5 122 724-866 7-128 (136)
47 3i42_A Response regulator rece 99.8 1.7E-18 5.8E-23 162.2 12.4 121 725-867 4-124 (127)
48 2pl1_A Transcriptional regulat 99.8 6.4E-18 2.2E-22 156.5 15.8 115 726-863 2-116 (121)
49 3kto_A Response regulator rece 99.8 1.5E-18 5.1E-23 165.0 11.6 117 725-864 7-125 (136)
50 1jbe_A Chemotaxis protein CHEY 99.8 1E-17 3.5E-22 156.9 16.9 118 725-863 5-123 (128)
51 3heb_A Response regulator rece 99.8 7E-18 2.4E-22 163.4 16.2 118 725-862 5-132 (152)
52 1zgz_A Torcad operon transcrip 99.8 8.7E-18 3E-22 155.9 15.7 115 725-863 3-117 (122)
53 1i3c_A Response regulator RCP1 99.8 1.4E-17 4.7E-22 161.0 17.5 117 725-861 9-133 (149)
54 3snk_A Response regulator CHEY 99.8 1.2E-18 4.1E-23 165.3 9.8 119 724-865 14-133 (135)
55 3ilh_A Two component response 99.8 7.2E-18 2.5E-22 161.4 15.3 127 724-868 9-142 (146)
56 2a9o_A Response regulator; ess 99.8 7.3E-18 2.5E-22 155.7 14.3 116 725-864 2-117 (120)
57 1dcf_A ETR1 protein; beta-alph 99.8 1.9E-17 6.4E-22 157.1 17.2 124 723-865 6-129 (136)
58 3hv2_A Response regulator/HD d 99.8 9.9E-18 3.4E-22 162.7 15.6 117 724-863 14-131 (153)
59 4dad_A Putative pilus assembly 99.8 2.2E-18 7.4E-23 165.7 10.7 121 724-866 20-142 (146)
60 1xhf_A DYE resistance, aerobic 99.8 1.1E-17 3.7E-22 155.5 15.0 115 725-863 4-118 (123)
61 3dzd_A Transcriptional regulat 99.7 2.1E-18 7E-23 192.7 11.6 116 725-863 1-116 (368)
62 3r0j_A Possible two component 99.7 7.2E-18 2.5E-22 178.1 15.2 117 724-863 23-139 (250)
63 3b2n_A Uncharacterized protein 99.7 1.1E-17 3.6E-22 158.4 14.4 118 725-865 4-123 (133)
64 1p6q_A CHEY2; chemotaxis, sign 99.7 7.9E-18 2.7E-22 157.9 13.3 118 725-863 7-125 (129)
65 3hzh_A Chemotaxis response reg 99.7 1.4E-17 4.7E-22 162.6 15.5 118 724-864 36-156 (157)
66 3h5i_A Response regulator/sens 99.7 3.8E-18 1.3E-22 163.0 11.2 117 724-863 5-122 (140)
67 4e7p_A Response regulator; DNA 99.7 1.7E-17 5.8E-22 160.4 15.9 119 725-866 21-141 (150)
68 1mvo_A PHOP response regulator 99.7 9.5E-18 3.2E-22 158.9 13.7 118 725-865 4-121 (136)
69 3f6c_A Positive transcription 99.7 5.6E-18 1.9E-22 160.0 11.8 119 725-866 2-121 (134)
70 2qzj_A Two-component response 99.7 1.1E-17 3.8E-22 159.1 14.0 115 725-863 5-119 (136)
71 3cfy_A Putative LUXO repressor 99.7 8.9E-18 3.1E-22 160.0 13.2 116 725-863 5-120 (137)
72 1k68_A Phytochrome response re 99.7 3.1E-17 1.1E-21 155.5 16.9 120 724-863 2-129 (140)
73 3grc_A Sensor protein, kinase; 99.7 5.3E-18 1.8E-22 161.6 11.7 120 724-864 6-126 (140)
74 3kht_A Response regulator; PSI 99.7 2E-17 6.8E-22 158.6 15.7 119 724-863 5-126 (144)
75 3jte_A Response regulator rece 99.7 3.6E-17 1.2E-21 156.4 16.6 117 725-863 4-121 (143)
76 3hdg_A Uncharacterized protein 99.7 1.5E-17 5.1E-22 157.8 13.6 118 724-864 7-124 (137)
77 3c3m_A Response regulator rece 99.7 2.1E-17 7.2E-22 157.4 14.4 119 725-864 4-122 (138)
78 3lte_A Response regulator; str 99.7 3.2E-17 1.1E-21 154.4 15.3 121 724-866 6-126 (132)
79 1yio_A Response regulatory pro 99.7 1.8E-17 6.3E-22 169.4 14.3 117 724-863 4-120 (208)
80 3a10_A Response regulator; pho 99.7 1.7E-17 5.7E-22 152.6 12.5 114 725-863 2-115 (116)
81 3nhm_A Response regulator; pro 99.7 2E-17 6.7E-22 156.0 13.0 117 725-864 5-121 (133)
82 3eul_A Possible nitrate/nitrit 99.7 2.7E-17 9.4E-22 159.2 14.4 120 723-865 14-135 (152)
83 2jba_A Phosphate regulon trans 99.7 1.1E-17 3.6E-22 156.4 10.8 119 725-864 3-121 (127)
84 1zh2_A KDP operon transcriptio 99.7 2.5E-17 8.4E-22 152.3 13.0 114 726-863 3-116 (121)
85 2qxy_A Response regulator; reg 99.7 4.4E-17 1.5E-21 155.6 14.8 118 724-865 4-121 (142)
86 1dz3_A Stage 0 sporulation pro 99.7 2E-17 6.8E-22 155.6 12.2 119 725-865 3-123 (130)
87 3q9s_A DNA-binding response re 99.7 2.4E-17 8.2E-22 174.2 14.1 118 724-865 37-154 (249)
88 3kcn_A Adenylate cyclase homol 99.7 4.9E-17 1.7E-21 157.4 15.1 117 724-863 4-121 (151)
89 3cnb_A DNA-binding response re 99.7 6.8E-17 2.3E-21 154.0 15.5 121 724-865 8-130 (143)
90 1k66_A Phytochrome response re 99.7 5.9E-17 2E-21 155.5 15.1 120 724-863 6-136 (149)
91 2rjn_A Response regulator rece 99.7 1.5E-16 5.1E-21 154.3 17.0 118 723-863 6-124 (154)
92 1a04_A Nitrate/nitrite respons 99.7 5.7E-17 2E-21 166.7 14.7 117 725-864 6-124 (215)
93 3eqz_A Response regulator; str 99.7 4.2E-17 1.5E-21 153.8 12.3 120 724-867 3-127 (135)
94 3cu5_A Two component transcrip 99.7 4.4E-17 1.5E-21 156.0 12.5 116 725-863 3-121 (141)
95 2zbk_B Type 2 DNA topoisomeras 99.7 2.3E-17 7.8E-22 190.3 12.2 118 383-550 23-148 (530)
96 1qkk_A DCTD, C4-dicarboxylate 99.7 1.7E-16 5.7E-21 154.2 16.5 117 724-863 3-119 (155)
97 2zay_A Response regulator rece 99.7 5.7E-17 1.9E-21 155.8 12.9 119 724-863 8-126 (147)
98 3eq2_A Probable two-component 99.7 2.3E-17 8E-22 186.3 11.7 116 725-863 6-122 (394)
99 1w25_A Stalked-cell differenti 99.7 1.5E-15 5.3E-20 174.8 26.7 257 577-862 2-267 (459)
100 3cz5_A Two-component response 99.7 1.5E-16 5E-21 154.2 14.8 120 724-866 5-126 (153)
101 1s8n_A Putative antiterminator 99.7 5.4E-17 1.9E-21 165.7 12.3 115 725-863 14-129 (205)
102 1mu5_A Type II DNA topoisomera 99.7 5.5E-17 1.9E-21 185.2 13.6 117 384-550 26-149 (471)
103 2qr3_A Two-component system re 99.7 1.6E-16 5.6E-21 150.9 14.6 118 725-865 4-126 (140)
104 3cg4_A Response regulator rece 99.7 5.8E-17 2E-21 154.6 11.0 119 724-863 7-125 (142)
105 1w25_A Stalked-cell differenti 99.7 9.5E-17 3.2E-21 184.9 14.8 117 725-862 2-118 (459)
106 3n53_A Response regulator rece 99.7 3.4E-17 1.2E-21 156.1 9.2 117 725-863 4-120 (140)
107 2jk1_A HUPR, hydrogenase trans 99.7 1.8E-16 6.1E-21 151.0 14.2 115 725-863 2-117 (139)
108 1kgs_A DRRD, DNA binding respo 99.7 7.7E-17 2.6E-21 166.8 12.4 116 725-863 3-118 (225)
109 2qvg_A Two component response 99.7 2.2E-16 7.4E-21 150.8 14.7 121 724-864 7-134 (143)
110 3cg0_A Response regulator rece 99.7 1.8E-16 6.1E-21 150.7 13.3 116 724-863 9-126 (140)
111 1ny5_A Transcriptional regulat 99.7 1.2E-16 4.1E-21 179.7 13.8 115 726-863 2-116 (387)
112 3kyj_B CHEY6 protein, putative 99.7 6E-17 2.1E-21 155.5 9.4 110 723-855 12-125 (145)
113 2gkg_A Response regulator homo 99.7 2.6E-16 8.9E-21 146.4 13.0 119 725-865 6-125 (127)
114 2gwr_A DNA-binding response re 99.7 2.5E-16 8.5E-21 164.9 14.1 117 725-865 6-122 (238)
115 1th8_A Anti-sigma F factor; SP 99.7 1.8E-16 6.1E-21 152.8 11.9 103 386-551 35-141 (145)
116 3klo_A Transcriptional regulat 99.7 4.7E-17 1.6E-21 168.9 7.4 119 725-865 8-129 (225)
117 1ys7_A Transcriptional regulat 99.7 1.7E-16 5.8E-21 165.1 11.5 116 725-863 8-123 (233)
118 2rdm_A Response regulator rece 99.7 5.8E-16 2E-20 145.5 14.0 119 724-866 5-124 (132)
119 2j48_A Two-component sensor ki 99.7 4.7E-16 1.6E-20 142.4 13.0 117 725-865 2-118 (119)
120 2qsj_A DNA-binding response re 99.7 3.1E-16 1.1E-20 151.9 12.2 120 725-866 4-125 (154)
121 2oqr_A Sensory transduction pr 99.7 3E-16 1E-20 163.0 12.6 117 725-865 5-121 (230)
122 3t8y_A CHEB, chemotaxis respon 99.7 6.2E-16 2.1E-20 152.1 13.8 121 724-868 25-158 (164)
123 2pln_A HP1043, response regula 99.7 1.3E-15 4.6E-20 144.4 15.3 116 722-865 16-133 (137)
124 3c97_A Signal transduction his 99.7 2.7E-16 9.1E-21 150.0 10.4 120 725-865 11-130 (140)
125 1p2f_A Response regulator; DRR 99.7 8E-16 2.7E-20 158.7 14.7 114 725-864 3-116 (220)
126 3bre_A Probable two-component 99.6 3.4E-16 1.1E-20 174.1 11.6 117 725-862 19-136 (358)
127 2qv0_A Protein MRKE; structura 99.6 1.3E-15 4.4E-20 145.5 14.0 115 724-863 9-125 (143)
128 2b4a_A BH3024; flavodoxin-like 99.6 7.2E-16 2.4E-20 146.5 11.6 117 723-866 14-132 (138)
129 1qo0_D AMIR; binding protein, 99.6 4.5E-16 1.5E-20 157.7 9.8 112 723-862 11-122 (196)
130 3sy8_A ROCR; TIM barrel phosph 99.6 3.8E-16 1.3E-20 176.8 9.4 118 725-864 4-127 (400)
131 3c3w_A Two component transcrip 99.6 1.9E-16 6.4E-21 164.5 5.9 115 726-863 3-119 (225)
132 1dc7_A NTRC, nitrogen regulati 99.6 4.6E-17 1.6E-21 151.0 0.2 117 725-864 4-120 (124)
133 3luf_A Two-component system re 99.6 9.7E-16 3.3E-20 162.9 9.8 103 725-853 5-108 (259)
134 2hqr_A Putative transcriptiona 99.6 7.5E-15 2.6E-19 151.7 15.2 114 726-866 2-116 (223)
135 1a2o_A CHEB methylesterase; ba 99.5 2.9E-14 9.8E-19 157.8 13.4 115 725-863 4-131 (349)
136 2vyc_A Biodegradative arginine 99.5 2E-14 6.8E-19 174.6 10.0 114 726-861 2-129 (755)
137 2q2e_B Type 2 DNA topoisomeras 99.5 7.4E-14 2.5E-18 163.1 9.8 115 384-550 31-155 (621)
138 3cwo_X Beta/alpha-barrel prote 98.9 3.4E-10 1.2E-14 117.3 3.5 93 749-864 6-100 (237)
139 1kij_A DNA gyrase subunit B; t 98.5 5.5E-08 1.9E-12 108.4 5.5 86 385-527 31-128 (390)
140 1b63_A MUTL; DNA mismatch repa 98.4 4.6E-07 1.6E-11 99.1 9.2 89 390-538 24-118 (333)
141 3zcc_A HAMP, osmolarity sensor 98.4 1.6E-06 5.6E-11 78.1 10.7 68 261-333 46-113 (114)
142 1h7s_A PMS1 protein homolog 2; 98.3 9.4E-07 3.2E-11 97.6 9.4 88 390-537 34-127 (365)
143 3na3_A DNA mismatch repair pro 98.3 1.8E-06 6.2E-11 94.1 10.2 88 390-537 28-121 (348)
144 3ke6_A Protein RV1364C/MT1410; 98.2 1.3E-06 4.4E-11 98.3 7.2 90 387-550 294-387 (399)
145 3h4l_A DNA mismatch repair pro 98.0 9.7E-06 3.3E-10 89.2 7.7 95 390-544 25-127 (367)
146 3to5_A CHEY homolog; alpha(5)b 98.0 3.3E-05 1.1E-09 72.8 10.3 120 575-700 11-131 (134)
147 1ixm_A SPO0B, protein (sporula 97.8 0.00016 5.4E-09 72.3 13.0 144 277-500 23-171 (192)
148 3zrx_A AF1503 protein, osmolar 97.7 7.7E-05 2.6E-09 66.8 8.5 62 269-335 54-115 (115)
149 3cwo_X Beta/alpha-barrel prote 97.7 1.6E-05 5.6E-10 81.7 3.2 206 603-861 8-222 (237)
150 2wer_A ATP-dependent molecular 97.6 4.5E-05 1.5E-09 78.2 6.1 58 476-537 74-141 (220)
151 3hzh_A Chemotaxis response reg 97.4 0.00048 1.6E-08 65.9 9.9 120 575-700 35-155 (157)
152 2ayx_A Sensor kinase protein R 97.4 0.00036 1.2E-08 73.0 9.1 97 721-863 8-104 (254)
153 1qy5_A Endoplasmin; GRP94, NEC 97.3 4.1E-05 1.4E-09 80.5 0.8 58 476-537 76-148 (269)
154 1yc1_A HSP 86, heat shock prot 97.3 0.00032 1.1E-08 73.6 7.0 58 476-537 116-183 (264)
155 3r0j_A Possible two component 97.2 0.0017 5.8E-08 67.4 11.9 140 539-701 1-140 (250)
156 3gl9_A Response regulator; bet 97.2 0.0033 1.1E-07 57.1 12.0 118 577-700 3-120 (122)
157 2ior_A Chaperone protein HTPG; 97.1 0.00014 4.9E-09 75.2 2.6 58 476-537 95-164 (235)
158 1dcf_A ETR1 protein; beta-alph 97.1 0.0047 1.6E-07 57.0 12.1 121 574-701 5-128 (136)
159 1s16_A Topoisomerase IV subuni 97.0 0.00058 2E-08 75.8 6.4 50 476-525 64-125 (390)
160 3i42_A Response regulator rece 97.0 0.0058 2E-07 55.5 11.9 119 576-701 3-121 (127)
161 3grc_A Sensor protein, kinase; 97.0 0.006 2.1E-07 56.5 12.1 121 576-701 6-126 (140)
162 3cg4_A Response regulator rece 96.9 0.014 4.9E-07 54.0 14.4 121 575-701 6-126 (142)
163 2lpm_A Two-component response 96.9 0.0015 5.3E-08 60.2 6.9 112 575-699 7-119 (123)
164 3h1g_A Chemotaxis protein CHEY 96.9 0.0057 1.9E-07 56.0 10.7 123 575-702 4-127 (129)
165 3h5i_A Response regulator/sens 96.8 0.017 5.7E-07 53.6 13.9 120 575-701 4-123 (140)
166 3gt7_A Sensor protein; structu 96.8 0.0068 2.3E-07 57.5 11.3 122 575-702 6-127 (154)
167 3nhm_A Response regulator; pro 96.8 0.025 8.5E-07 51.6 14.4 119 576-702 4-122 (133)
168 1k68_A Phytochrome response re 96.8 0.0079 2.7E-07 55.2 10.8 122 576-701 2-130 (140)
169 3t6k_A Response regulator rece 96.7 0.0082 2.8E-07 55.6 10.9 121 576-702 4-124 (136)
170 3lua_A Response regulator rece 96.7 0.0058 2E-07 56.7 9.8 122 576-702 4-127 (140)
171 3m6m_D Sensory/regulatory prot 96.7 0.007 2.4E-07 56.6 10.4 122 573-700 11-134 (143)
172 3n0r_A Response regulator; sig 96.7 0.02 6.8E-07 60.9 14.8 116 576-702 160-277 (286)
173 2gkg_A Response regulator homo 96.7 0.019 6.5E-07 51.6 12.7 118 577-701 6-124 (127)
174 3heb_A Response regulator rece 96.7 0.012 4E-07 55.5 11.4 121 576-700 4-133 (152)
175 3ilh_A Two component response 96.6 0.0085 2.9E-07 55.6 10.0 124 575-702 8-139 (146)
176 3mm4_A Histidine kinase homolo 96.6 0.0077 2.6E-07 60.5 10.2 167 522-701 15-195 (206)
177 3lte_A Response regulator; str 96.6 0.015 5.1E-07 53.0 11.4 121 575-702 5-125 (132)
178 3f6p_A Transcriptional regulat 96.6 0.019 6.6E-07 51.6 11.8 116 577-701 3-118 (120)
179 3hdv_A Response regulator; PSI 96.5 0.018 6.1E-07 52.9 11.6 121 576-702 7-127 (136)
180 3t0h_A Heat shock protein HSP 96.5 0.00098 3.4E-08 68.3 2.9 59 476-538 80-148 (228)
181 3eod_A Protein HNR; response r 96.5 0.014 4.7E-07 53.2 10.5 120 574-701 5-125 (130)
182 2qvg_A Two component response 96.5 0.02 6.7E-07 53.1 11.8 124 576-703 7-136 (143)
183 1k66_A Phytochrome response re 96.5 0.016 5.5E-07 53.9 11.0 123 575-701 5-137 (149)
184 2zay_A Response regulator rece 96.5 0.013 4.5E-07 54.6 10.3 121 575-701 7-127 (147)
185 3jte_A Response regulator rece 96.5 0.017 5.9E-07 53.5 11.0 119 577-701 4-122 (143)
186 2gqp_A Endoplasmin; GRP94, HSP 96.4 0.00073 2.5E-08 69.8 1.4 59 476-538 80-153 (236)
187 3cnb_A DNA-binding response re 96.4 0.02 7E-07 52.8 11.4 122 575-702 7-130 (143)
188 1jbe_A Chemotaxis protein CHEY 96.4 0.018 6.2E-07 52.1 10.8 119 576-700 4-123 (128)
189 2b4a_A BH3024; flavodoxin-like 96.4 0.05 1.7E-06 50.0 13.8 118 573-701 12-130 (138)
190 2rjn_A Response regulator rece 96.4 0.024 8.2E-07 53.4 11.7 121 574-701 5-125 (154)
191 1mb3_A Cell division response 96.4 0.026 9E-07 50.6 11.4 119 577-701 2-120 (124)
192 3kht_A Response regulator; PSI 96.4 0.023 7.9E-07 52.7 11.3 121 575-701 4-127 (144)
193 3c3m_A Response regulator rece 96.4 0.047 1.6E-06 50.3 13.4 120 577-702 4-123 (138)
194 3c97_A Signal transduction his 96.3 0.05 1.7E-06 50.2 13.3 117 576-701 10-129 (140)
195 2r25_B Osmosensing histidine p 96.3 0.022 7.5E-07 52.4 10.7 120 577-701 3-126 (133)
196 2jba_A Phosphate regulon trans 96.3 0.032 1.1E-06 50.3 11.6 119 577-701 3-121 (127)
197 2pln_A HP1043, response regula 96.3 0.029 1E-06 51.5 11.5 118 572-701 14-132 (137)
198 3cg0_A Response regulator rece 96.2 0.036 1.2E-06 50.9 11.7 118 575-701 8-127 (140)
199 2rdm_A Response regulator rece 96.2 0.096 3.3E-06 47.4 14.4 121 575-703 4-124 (132)
200 3a10_A Response regulator; pho 96.2 0.083 2.8E-06 46.7 13.6 114 577-700 2-115 (116)
201 2j48_A Two-component sensor ki 96.2 0.022 7.5E-07 50.3 9.5 116 576-700 1-116 (119)
202 4dad_A Putative pilus assembly 96.1 0.017 5.7E-07 53.9 9.1 125 572-702 16-141 (146)
203 3n53_A Response regulator rece 96.1 0.063 2.2E-06 49.4 12.9 119 576-701 3-121 (140)
204 3hv2_A Response regulator/HD d 96.1 0.034 1.2E-06 52.3 11.0 119 575-701 13-132 (153)
205 1i3c_A Response regulator RCP1 96.1 0.044 1.5E-06 51.3 11.7 122 576-701 8-136 (149)
206 3n75_A LDC, lysine decarboxyla 96.0 0.0031 1.1E-07 75.5 3.9 93 737-854 19-111 (715)
207 3rqi_A Response regulator prot 96.0 0.015 5.1E-07 57.1 8.3 119 574-700 5-123 (184)
208 2qr3_A Two-component system re 96.0 0.041 1.4E-06 50.5 11.0 122 576-702 3-126 (140)
209 3kto_A Response regulator rece 96.0 0.022 7.6E-07 52.4 9.1 121 576-702 6-126 (136)
210 3peh_A Endoplasmin homolog; st 96.0 0.0042 1.5E-07 65.1 4.3 58 476-537 94-162 (281)
211 1p6q_A CHEY2; chemotaxis, sign 96.0 0.022 7.4E-07 51.7 8.6 120 576-701 6-126 (129)
212 3snk_A Response regulator CHEY 96.0 0.015 5.1E-07 53.5 7.6 118 576-701 14-132 (135)
213 1dbw_A Transcriptional regulat 95.9 0.077 2.6E-06 47.8 12.3 118 576-701 3-120 (126)
214 2qxy_A Response regulator; reg 95.9 0.047 1.6E-06 50.4 11.1 118 576-702 4-121 (142)
215 1tmy_A CHEY protein, TMY; chem 95.9 0.051 1.8E-06 48.4 10.9 116 576-699 2-118 (120)
216 1ei1_A DNA gyrase B, GYRB; ATP 95.9 0.0056 1.9E-07 67.9 5.1 50 476-525 67-128 (391)
217 3o0i_A HSP90AA1 protein; HSP90 95.9 0.0022 7.5E-08 66.5 1.7 58 476-537 108-175 (256)
218 2pl1_A Transcriptional regulat 95.9 0.06 2E-06 48.0 11.2 116 577-700 1-116 (121)
219 4e7p_A Response regulator; DNA 95.8 0.064 2.2E-06 50.2 11.7 120 574-701 18-139 (150)
220 3f6c_A Positive transcription 95.8 0.048 1.7E-06 49.7 10.5 118 577-702 2-120 (134)
221 1srr_A SPO0F, sporulation resp 95.8 0.051 1.7E-06 48.8 10.4 117 577-701 4-120 (124)
222 1y4s_A Chaperone protein HTPG; 95.8 0.016 5.6E-07 66.8 8.4 47 476-522 75-133 (559)
223 3crn_A Response regulator rece 95.7 0.082 2.8E-06 48.2 11.7 116 577-700 4-119 (132)
224 1mvo_A PHOP response regulator 95.7 0.095 3.2E-06 47.8 12.1 118 577-702 4-121 (136)
225 2qzj_A Two-component response 95.7 0.058 2E-06 49.7 10.4 117 576-701 4-120 (136)
226 1xhf_A DYE resistance, aerobic 95.6 0.067 2.3E-06 47.9 10.5 115 577-700 4-118 (123)
227 1zgz_A Torcad operon transcrip 95.6 0.09 3.1E-06 46.9 11.3 115 577-700 3-117 (122)
228 1ys7_A Transcriptional regulat 95.6 0.2 7E-06 50.5 15.3 118 576-701 7-124 (233)
229 3hdg_A Uncharacterized protein 95.6 0.033 1.1E-06 51.1 8.3 118 576-701 7-124 (137)
230 1qkk_A DCTD, C4-dicarboxylate 95.6 0.058 2E-06 50.7 10.2 118 576-701 3-120 (155)
231 3fv5_A DNA topoisomerase 4 sub 95.6 0.0081 2.8E-07 60.3 4.2 49 476-524 50-110 (201)
232 2cg9_A ATP-dependent molecular 95.5 0.017 5.8E-07 67.9 7.3 44 476-519 74-127 (677)
233 1a2o_A CHEB methylesterase; ba 95.5 0.18 6E-06 55.1 15.0 188 577-794 4-206 (349)
234 3eul_A Possible nitrate/nitrit 95.4 0.1 3.5E-06 48.8 11.3 122 573-702 12-135 (152)
235 3nmq_A Heat shock protein HSP 95.2 0.0054 1.8E-07 62.9 1.7 57 476-537 87-154 (239)
236 3cz5_A Two-component response 95.2 0.12 4.1E-06 48.4 11.1 119 575-701 4-124 (153)
237 1kgs_A DRRD, DNA binding respo 95.2 0.17 5.7E-06 50.8 12.9 117 577-701 3-119 (225)
238 2a9o_A Response regulator; ess 95.2 0.099 3.4E-06 46.3 10.1 115 577-700 2-116 (120)
239 3kcn_A Adenylate cyclase homol 95.2 0.079 2.7E-06 49.6 9.7 118 576-701 4-122 (151)
240 3dzd_A Transcriptional regulat 95.0 0.082 2.8E-06 58.2 10.7 117 577-701 1-117 (368)
241 1s8n_A Putative antiterminator 95.0 0.14 4.7E-06 50.8 11.5 116 577-701 14-130 (205)
242 3cfy_A Putative LUXO repressor 94.9 0.1 3.4E-06 48.1 9.3 116 578-701 6-121 (137)
243 3eqz_A Response regulator; str 94.9 0.069 2.3E-06 48.5 8.1 120 576-703 3-126 (135)
244 2o1u_A Endoplasmin; GRP94, HSP 94.8 0.016 5.4E-07 68.1 4.2 22 476-497 93-114 (666)
245 1yio_A Response regulatory pro 94.7 0.14 4.9E-06 50.6 10.5 118 576-701 4-121 (208)
246 2qv0_A Protein MRKE; structura 94.6 0.29 1E-05 44.9 12.0 116 576-701 9-126 (143)
247 1dz3_A Stage 0 sporulation pro 94.6 0.12 4.1E-06 46.8 9.0 119 577-702 3-123 (130)
248 2ioq_A Chaperone protein HTPG; 94.6 0.022 7.6E-07 66.6 4.7 57 476-536 75-143 (624)
249 3cwv_A DNA gyrase, B subunit, 94.5 0.062 2.1E-06 59.0 7.9 29 387-415 27-58 (369)
250 2gwr_A DNA-binding response re 94.5 0.18 6.1E-06 51.4 10.9 117 577-702 6-122 (238)
251 3q7r_A Transcriptional regulat 94.5 0.42 1.4E-05 41.2 10.9 105 725-864 13-117 (121)
252 3kyj_B CHEY6 protein, putative 94.4 0.11 3.6E-06 48.2 8.3 109 575-690 12-123 (145)
253 1zh2_A KDP operon transcriptio 94.4 0.17 5.7E-06 44.9 9.2 115 577-700 2-116 (121)
254 2qsj_A DNA-binding response re 94.4 0.24 8.3E-06 46.2 10.8 120 576-702 3-124 (154)
255 3q9s_A DNA-binding response re 94.2 0.18 6.1E-06 52.0 10.3 119 575-702 36-154 (249)
256 3b2n_A Uncharacterized protein 94.2 0.25 8.7E-06 44.9 10.4 117 577-701 4-122 (133)
257 3t8y_A CHEB, chemotaxis respon 94.0 0.28 9.7E-06 46.6 10.7 119 576-702 25-155 (164)
258 3cu5_A Two component transcrip 93.7 0.5 1.7E-05 43.5 11.5 117 577-701 3-122 (141)
259 1qo0_D AMIR; binding protein, 93.7 0.09 3.1E-06 51.7 6.6 114 574-700 10-123 (196)
260 2jk1_A HUPR, hydrogenase trans 93.7 0.35 1.2E-05 44.2 10.3 115 578-700 3-117 (139)
261 2hqr_A Putative transcriptiona 93.7 0.21 7.3E-06 50.0 9.4 115 577-703 1-116 (223)
262 1ny5_A Transcriptional regulat 93.5 0.32 1.1E-05 53.8 11.3 116 577-700 1-116 (387)
263 2oqr_A Sensory transduction pr 93.4 0.22 7.4E-06 50.2 8.9 117 577-702 5-121 (230)
264 1dc7_A NTRC, nitrogen regulati 93.2 0.17 5.9E-06 44.9 7.0 117 577-701 4-120 (124)
265 1p2f_A Response regulator; DRR 92.9 0.28 9.5E-06 49.1 8.9 115 577-702 3-117 (220)
266 1a04_A Nitrate/nitrite respons 92.8 0.48 1.6E-05 47.1 10.5 118 577-702 6-125 (215)
267 4emv_A DNA topoisomerase IV, B 92.5 0.12 4E-06 52.6 5.3 49 476-524 73-132 (226)
268 4duh_A DNA gyrase subunit B; s 92.3 0.15 5.2E-06 51.7 5.9 49 477-525 69-129 (220)
269 3eq2_A Probable two-component 92.2 0.26 9E-06 54.4 8.2 116 576-699 5-121 (394)
270 3sy8_A ROCR; TIM barrel phosph 92.0 0.52 1.8E-05 52.2 10.4 118 577-701 4-127 (400)
271 1wv2_A Thiazole moeity, thiazo 91.0 1.1 3.9E-05 45.9 10.6 82 740-847 127-215 (265)
272 3ttz_A DNA gyrase subunit B; p 90.1 0.35 1.2E-05 48.1 5.8 29 387-415 28-59 (198)
273 2yxb_A Coenzyme B12-dependent 89.8 2.8 9.7E-05 40.0 11.9 117 724-863 18-143 (161)
274 1pvg_A DNA topoisomerase II; G 89.7 0.43 1.5E-05 53.1 6.7 66 476-545 99-177 (418)
275 3c3w_A Two component transcrip 89.7 0.37 1.3E-05 48.6 5.8 117 577-701 2-120 (225)
276 1zxm_A TOPO IIA ATPase, DNA to 89.5 0.47 1.6E-05 52.5 6.8 49 476-524 87-147 (400)
277 3klo_A Transcriptional regulat 89.4 1.8 6.2E-05 43.2 10.8 120 576-701 7-128 (225)
278 3bre_A Probable two-component 88.8 0.76 2.6E-05 49.7 7.9 116 577-698 19-135 (358)
279 3ied_A Heat shock protein; HSP 86.3 0.36 1.2E-05 49.6 3.1 56 476-535 131-197 (272)
280 3lnu_A Topoisomerase IV subuni 83.6 0.97 3.3E-05 50.0 5.2 49 477-525 84-144 (408)
281 2htm_A Thiazole biosynthesis p 80.8 5.7 0.0002 40.8 9.2 83 740-847 116-206 (268)
282 3q58_A N-acetylmannosamine-6-p 80.7 9.3 0.00032 38.6 11.0 88 734-847 115-209 (229)
283 2i2x_B MTAC, methyltransferase 72.5 24 0.00081 36.2 11.5 112 724-864 123-243 (258)
284 3igs_A N-acetylmannosamine-6-p 70.7 21 0.00073 36.0 10.5 88 734-847 115-209 (232)
285 1ccw_A Protein (glutamate muta 70.4 20 0.00067 33.0 9.3 110 731-862 14-133 (137)
286 2vyc_A Biodegradative arginine 69.4 9.3 0.00032 45.9 8.6 111 577-691 1-121 (755)
287 4dah_A Sporulation kinase D; a 66.9 32 0.0011 33.5 10.9 66 86-163 94-159 (217)
288 4gfh_A DNA topoisomerase 2; to 65.9 8.6 0.00029 48.3 7.4 50 476-525 94-155 (1177)
289 1geq_A Tryptophan synthase alp 64.9 12 0.00039 38.1 7.2 34 819-852 80-119 (248)
290 1y80_A Predicted cobalamin bin 63.1 31 0.001 34.0 9.8 102 724-849 88-198 (210)
291 3ezx_A MMCP 1, monomethylamine 63.0 20 0.00068 35.8 8.3 102 724-849 92-204 (215)
292 3rht_A (gatase1)-like protein; 54.0 5.1 0.00017 41.4 2.1 66 725-794 5-75 (259)
293 3ffs_A Inosine-5-monophosphate 50.4 1.6E+02 0.0054 32.2 13.5 100 725-846 157-273 (400)
294 3fwz_A Inner membrane protein 50.4 86 0.0029 28.2 9.9 94 724-847 30-124 (140)
295 2oo3_A Protein involved in cat 49.3 15 0.00053 38.2 4.8 71 723-793 112-184 (283)
296 3f4w_A Putative hexulose 6 pho 48.2 72 0.0025 31.0 9.6 108 727-861 80-205 (211)
297 3qja_A IGPS, indole-3-glycerol 47.0 1.2E+02 0.004 31.3 11.2 101 737-861 151-260 (272)
298 3l4e_A Uncharacterized peptida 47.0 54 0.0019 32.3 8.3 65 723-794 26-100 (206)
299 2ekc_A AQ_1548, tryptophan syn 44.2 48 0.0016 34.0 7.7 42 819-860 94-141 (262)
300 1geq_A Tryptophan synthase alp 43.0 72 0.0025 32.0 8.9 86 736-848 121-220 (248)
301 2w6r_A Imidazole glycerol phos 42.9 54 0.0018 33.3 8.0 40 819-858 200-245 (266)
302 3lif_A Putative diguanylate cy 42.8 43 0.0015 33.4 7.2 66 86-163 94-161 (254)
303 3nav_A Tryptophan synthase alp 42.5 22 0.00075 36.9 4.7 50 783-854 83-138 (271)
304 2xij_A Methylmalonyl-COA mutas 41.4 1.1E+02 0.0039 36.2 11.1 116 725-863 605-729 (762)
305 4fo4_A Inosine 5'-monophosphat 40.5 1.6E+02 0.0055 31.7 11.5 100 725-847 121-239 (366)
306 2gjl_A Hypothetical protein PA 38.8 2.1E+02 0.0073 29.9 12.1 82 741-847 111-200 (328)
307 1xm3_A Thiazole biosynthesis p 38.6 27 0.00094 35.9 4.8 74 748-847 126-206 (264)
308 3tsm_A IGPS, indole-3-glycerol 38.4 2.9E+02 0.0098 28.4 12.5 96 737-856 158-262 (272)
309 1yad_A Regulatory protein TENI 38.3 94 0.0032 30.6 8.7 69 753-847 116-191 (221)
310 3khj_A Inosine-5-monophosphate 38.1 1.5E+02 0.0052 31.8 10.8 89 735-846 132-234 (361)
311 3vnd_A TSA, tryptophan synthas 37.7 22 0.00074 36.8 3.8 38 818-855 94-137 (267)
312 3o63_A Probable thiamine-phosp 37.3 91 0.0031 31.6 8.4 85 753-861 141-237 (243)
313 1req_A Methylmalonyl-COA mutas 37.3 1.1E+02 0.0038 36.1 10.1 114 725-861 597-719 (727)
314 1xrs_B D-lysine 5,6-aminomutas 37.1 1.4E+02 0.0046 30.7 9.6 112 725-860 121-253 (262)
315 1qop_A Tryptophan synthase alp 36.2 28 0.00097 35.9 4.4 38 819-856 94-137 (268)
316 1ka9_F Imidazole glycerol phos 35.6 96 0.0033 31.1 8.4 54 785-861 185-244 (252)
317 3c8c_A Methyl-accepting chemot 35.4 60 0.002 31.5 6.7 63 86-158 88-150 (240)
318 2kx7_A Sensor-like histidine k 35.0 42 0.0014 29.6 4.5 50 721-777 4-53 (117)
319 3lib_A Hypothetical sensory tr 34.7 56 0.0019 33.3 6.6 61 85-159 119-179 (290)
320 2v82_A 2-dehydro-3-deoxy-6-pho 34.1 66 0.0023 31.4 6.7 80 742-848 95-176 (212)
321 3li9_A Hypothetical sensory tr 33.2 43 0.0015 34.2 5.3 60 85-158 120-179 (291)
322 1xi3_A Thiamine phosphate pyro 33.1 91 0.0031 30.2 7.6 68 754-847 115-189 (215)
323 3ovp_A Ribulose-phosphate 3-ep 32.8 99 0.0034 30.9 7.8 83 740-847 104-196 (228)
324 3tfw_A Putative O-methyltransf 32.8 1.4E+02 0.0047 29.8 9.1 68 724-793 88-158 (248)
325 3kp1_A D-ornithine aminomutase 31.5 1.4E+02 0.0048 34.6 9.2 112 725-860 603-730 (763)
326 3lic_A Sensor protein; PDC fol 31.3 45 0.0015 33.6 5.0 59 89-159 117-176 (274)
327 3dr5_A Putative O-methyltransf 30.9 88 0.003 30.9 7.0 67 724-793 81-151 (221)
328 1fy2_A Aspartyl dipeptidase; s 30.7 1.3E+02 0.0043 30.1 8.1 59 725-793 32-99 (229)
329 1eep_A Inosine 5'-monophosphat 30.5 2.9E+02 0.0099 29.9 11.8 91 735-847 180-284 (404)
330 2xxa_A Signal recognition part 29.7 94 0.0032 34.4 7.6 53 724-777 129-191 (433)
331 3l9w_A Glutathione-regulated p 29.6 1.2E+02 0.0042 33.2 8.5 97 724-850 27-124 (413)
332 2v5j_A 2,4-dihydroxyhept-2-ENE 29.3 4.9E+02 0.017 26.8 12.8 99 740-861 30-132 (287)
333 3bo9_A Putative nitroalkan dio 29.1 2.3E+02 0.008 29.7 10.4 82 741-847 117-204 (326)
334 1uir_A Polyamine aminopropyltr 28.7 1.7E+02 0.0057 30.6 9.1 69 724-794 101-184 (314)
335 1h5y_A HISF; histidine biosynt 28.7 1.7E+02 0.0059 28.8 9.0 43 819-861 198-246 (253)
336 1thf_D HISF protein; thermophI 28.6 1E+02 0.0035 30.9 7.2 70 769-861 164-243 (253)
337 3cvo_A Methyltransferase-like 28.4 79 0.0027 31.1 5.9 26 724-749 51-76 (202)
338 1rd5_A Tryptophan synthase alp 28.1 71 0.0024 32.5 5.9 81 758-862 35-139 (262)
339 1x1o_A Nicotinate-nucleotide p 27.9 1.5E+02 0.0053 30.6 8.4 90 727-845 169-265 (286)
340 2w6r_A Imidazole glycerol phos 27.7 88 0.003 31.7 6.5 30 819-848 74-103 (266)
341 2p10_A MLL9387 protein; putati 27.5 1.4E+02 0.0047 30.9 7.7 86 744-848 159-259 (286)
342 2vws_A YFAU, 2-keto-3-deoxy su 27.3 5E+02 0.017 26.3 12.9 83 757-861 28-111 (267)
343 1vzw_A Phosphoribosyl isomeras 27.0 1.2E+02 0.0041 30.2 7.3 80 756-859 147-239 (244)
344 4avf_A Inosine-5'-monophosphat 26.6 3.8E+02 0.013 29.9 12.1 100 725-847 242-360 (490)
345 3r75_A Anthranilate/para-amino 26.5 1.2E+02 0.0041 35.4 8.1 49 722-775 444-492 (645)
346 1qo2_A Molecule: N-((5-phospho 26.2 3E+02 0.01 27.1 10.2 52 785-859 177-240 (241)
347 1j8m_F SRP54, signal recogniti 26.1 1.1E+02 0.0037 32.0 6.9 58 724-784 126-193 (297)
348 2pyy_A Ionotropic glutamate re 25.9 1.2E+02 0.0042 28.6 7.1 50 722-777 110-159 (228)
349 3vk5_A MOEO5; TIM barrel, tran 25.9 1.7E+02 0.0059 30.2 8.1 71 770-862 200-275 (286)
350 1ka9_F Imidazole glycerol phos 25.6 1.8E+02 0.0062 28.9 8.4 30 818-847 74-103 (252)
351 1tqx_A D-ribulose-5-phosphate 25.3 2.4E+02 0.0082 28.1 9.0 83 743-848 109-201 (227)
352 2i7c_A Spermidine synthase; tr 25.2 2.1E+02 0.007 29.3 8.9 68 725-794 103-181 (283)
353 4gud_A Imidazole glycerol phos 25.1 1.7E+02 0.0057 28.3 7.8 44 725-775 3-46 (211)
354 1tqj_A Ribulose-phosphate 3-ep 24.5 96 0.0033 31.0 5.9 44 783-850 49-94 (230)
355 3gjy_A Spermidine synthase; AP 24.4 1.9E+02 0.0065 30.4 8.4 70 724-794 113-189 (317)
356 3ajx_A 3-hexulose-6-phosphate 24.3 25 0.00086 34.4 1.5 56 775-852 29-88 (207)
357 2lci_A Protein OR36; structura 24.3 1.7E+02 0.0059 24.5 6.2 38 727-764 80-117 (134)
358 3c3y_A Pfomt, O-methyltransfer 24.1 1.7E+02 0.0058 28.9 7.8 68 724-793 95-169 (237)
359 4dzz_A Plasmid partitioning pr 23.9 1.4E+02 0.0049 28.2 7.0 51 723-777 29-83 (206)
360 3qz6_A HPCH/HPAI aldolase; str 23.8 4.7E+02 0.016 26.4 11.1 84 756-861 25-109 (261)
361 3usb_A Inosine-5'-monophosphat 23.7 4.5E+02 0.015 29.5 12.0 102 724-847 268-387 (511)
362 2p9j_A Hypothetical protein AQ 23.7 2.1E+02 0.0073 25.8 8.0 39 819-857 52-90 (162)
363 2tps_A Protein (thiamin phosph 23.1 2.3E+02 0.0078 27.6 8.5 69 754-847 123-199 (227)
364 2z6i_A Trans-2-enoyl-ACP reduc 23.1 2.6E+02 0.0088 29.4 9.4 80 742-846 104-189 (332)
365 2q5c_A NTRC family transcripti 22.9 4E+02 0.014 25.6 10.0 71 724-794 4-90 (196)
366 3r2g_A Inosine 5'-monophosphat 22.4 7.3E+02 0.025 26.4 14.0 96 725-847 113-227 (361)
367 1h5y_A HISF; histidine biosynt 22.2 2.3E+02 0.0077 27.9 8.4 28 819-846 77-104 (253)
368 3u81_A Catechol O-methyltransf 22.2 1.9E+02 0.0065 28.0 7.6 56 724-779 83-144 (221)
369 2fpo_A Methylase YHHF; structu 22.2 2.8E+02 0.0096 26.4 8.8 67 725-793 78-146 (202)
370 4adt_A Pyridoxine biosynthetic 22.0 1.6E+02 0.0053 30.8 7.1 29 819-847 207-237 (297)
371 1y0e_A Putative N-acetylmannos 22.0 1.1E+02 0.0037 30.1 5.7 30 819-848 175-204 (223)
372 1ujp_A Tryptophan synthase alp 21.8 66 0.0023 33.2 4.1 55 785-862 80-140 (271)
373 1iy9_A Spermidine synthase; ro 21.7 1.9E+02 0.0064 29.5 7.7 68 725-794 100-178 (275)
374 3cbg_A O-methyltransferase; cy 21.4 1.8E+02 0.0063 28.5 7.4 68 724-793 97-170 (232)
375 2avd_A Catechol-O-methyltransf 21.4 2.9E+02 0.0099 26.6 8.9 68 724-793 94-167 (229)
376 3llv_A Exopolyphosphatase-rela 21.3 4.2E+02 0.014 23.2 11.2 93 724-847 29-122 (141)
377 2b2c_A Spermidine synthase; be 21.0 1.7E+02 0.0058 30.6 7.3 68 724-793 132-210 (314)
378 3bul_A Methionine synthase; tr 20.9 2.3E+02 0.0078 32.6 8.7 56 724-780 98-160 (579)
379 1sui_A Caffeoyl-COA O-methyltr 20.6 2E+02 0.0067 28.8 7.4 68 724-793 104-178 (247)
380 3c3p_A Methyltransferase; NP_9 20.6 3.1E+02 0.011 26.1 8.7 65 724-793 81-148 (210)
381 1jcn_A Inosine monophosphate d 20.5 3.3E+02 0.011 30.5 10.1 91 735-850 282-390 (514)
382 3s83_A Ggdef family protein; s 20.5 1.2E+02 0.0042 30.3 5.9 104 738-863 142-256 (259)
383 3duw_A OMT, O-methyltransferas 20.4 2E+02 0.007 27.6 7.4 68 724-793 83-155 (223)
384 4e5v_A Putative THUA-like prot 20.3 1.2E+02 0.004 31.5 5.7 58 725-784 5-73 (281)
385 1lst_A Lysine, arginine, ornit 20.3 1.6E+02 0.0054 28.3 6.6 54 722-777 109-162 (239)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=6.1e-40 Score=349.37 Aligned_cols=232 Identities=26% Similarity=0.400 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Q 002879 266 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE---LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 342 (871)
Q Consensus 266 ~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~---l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~ 342 (871)
+++++.++.|.+|++++||||||||++|.|++++|.+.. .....+++++.+..++++|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 345566778899999999999999999999999986531 23456789999999999999999999999999999999
Q ss_pred eEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC----eEEEEEEEe
Q 002879 343 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLV 418 (871)
Q Consensus 343 l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~ 418 (871)
+...++|+.+++++++..+...+..+++.+.+..+...+..+.+|+.+|.|||.|||+||+||++.| .|.|.+...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence 9999999999999999999999999999998887655566788999999999999999999999654 355544321
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccc
Q 002879 419 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 498 (871)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 498 (871)
...+.|+|+|+|+|||++.+++||+||
T Consensus 171 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f 197 (258)
T 2c2a_A 171 -----------------------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQF 197 (258)
T ss_dssp -----------------------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTT
T ss_pred -----------------------------------------------------CCeEEEEEEecCCCCCHHHHHhhcccc
Confidence 124789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 499 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 499 ~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
|+.+.+.+...+|+||||+|||++++.|||+|+++|.+|+||+|+|++|...
T Consensus 198 ~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 198 YRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 9988766666679999999999999999999999999999999999999754
No 2
>3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A*
Probab=100.00 E-value=3e-38 Score=336.45 Aligned_cols=211 Identities=65% Similarity=1.034 Sum_probs=192.5
Q ss_pred hHHHHHHhhhhhccCccceeeecccCcchHHHHHHHhCceeeeecccccCCCCCCCCCCCCCceeeeEeecCCCceEEee
Q 002879 2 TFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISL 81 (871)
Q Consensus 2 ~f~~~~~~~~~~~p~~~~~~~~~~v~~~~r~~fe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~pv~~~~~~~~~~~g~ 81 (871)
.|..|+++++.++|+|+|++|+|+|.++||++||++++|.|+++.. .+|++.|++|+||+|+++.|+.++||
T Consensus 58 ~F~~~a~~l~~~~pgi~~l~~ap~V~~~~r~~fe~~~~~~I~~~~~--------~~p~~~r~~y~pi~y~ep~N~~alG~ 129 (270)
T 3t4l_A 58 TFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDR--------GEPSPVRDEYAPVIFSQDSVSYLESL 129 (270)
T ss_dssp HHHHHHHHTGGGCTTEEEEEEEECEEGGGHHHHHHHHTSCCBCTTT--------CCBCCCCSEECBEEEECGGGGGGBTB
T ss_pred HHHHHHHHHhhcCCCceEEEEEeecCHhHHHHHHhccCceeeccCC--------cccCCCCCccceEEEeCCCCccceee
Confidence 6999999999999999999999999999999999999999988752 56999999999999999999999999
Q ss_pred ccCCChhchHHHHHHHhcCCceeeccccccccCCceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecchHHHHHHHHH
Q 002879 82 DMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLH 161 (871)
Q Consensus 82 d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l~~~~l~ 161 (871)
||+|+|.||++|.+||+||++++|+|++|+|.++.|+++++|||+.+.+++.|+++|+++++|||+++|++++|++.++.
T Consensus 130 D~~S~p~rr~al~~Ar~tg~~~ls~pv~Lvq~~~~G~ll~~PVy~~~~~~~~t~~~R~~~~~G~v~~v~~~~~l~~~~l~ 209 (270)
T 3t4l_A 130 DMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLG 209 (270)
T ss_dssp BGGGSHHHHHHHHHHHHHSSCEECCCEECTTTCCEEEEEEEEEECTTCCSSCCHHHHHHTEEEEEEEEECHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHhCCcEEecCeeeccCCCceEEEEEEeecCCCCCCCCHHHHHHHHhhEEEEEEEHHHHHHHHhh
Confidence 99999999999999999999999999999997899999999999988776689999999999999999999999999998
Q ss_pred HhhccCcEEEEEeecCCCCCceecccCccCCC--cceeeeeccCCCcccccceeeeecccC
Q 002879 162 QLASKQTIFVNVYDITNLSHPISMYGSNVSDD--GLWLVSTLNFGDPFRKHEMRCRFKQKA 220 (871)
Q Consensus 162 ~~~~~~~~~~~~~d~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (871)
++...+.+.+.+||.++.+.+..+|++..... ++.+.+.++||+|+|+|+|+|||++++
T Consensus 210 ~~~~~~~l~l~i~D~~~~~~~~~ly~s~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 270 (270)
T 3t4l_A 210 QLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKA 270 (270)
T ss_dssp TSTTGGGEEEEEEECSSTTSCEEEECC--CCCCTTCCEEEEECCSCTTCCEEEEEEECC--
T ss_pred ccccCCcEEEEEEECCCCCCCcccccCCCCCCCCcceEEEEeecCCchhhhheeeecccCC
Confidence 77655789999999998777889999877643 447899999999999999999999863
No 3
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=8.4e-35 Score=310.94 Aligned_cols=231 Identities=28% Similarity=0.442 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002879 261 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 339 (871)
Q Consensus 261 ~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~-l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g 339 (871)
+.+..++++++++.+.+|++.++|||||||++|.++++++.+.. .++..+++++.+..++++|..++++++++++++.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34445566677778899999999999999999999999997654 56778899999999999999999999999999999
Q ss_pred CeeeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEEe
Q 002879 340 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLV 418 (871)
Q Consensus 340 ~~~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~ 418 (871)
...+...++++.+++++++..+...+..+++.+.+.+++..+ .+.+|+..|.||+.|||+||+||++. |.|.|.+...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999887654 58899999999999999999999976 7777776431
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccc
Q 002879 419 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 498 (871)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 498 (871)
...+.|+|.|+|+||+++.++++|+||
T Consensus 185 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~ 211 (268)
T 4ew8_A 185 -----------------------------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRF 211 (268)
T ss_dssp -----------------------------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTT
T ss_pred -----------------------------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 125789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 002879 499 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 551 (871)
Q Consensus 499 ~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~ 551 (871)
++. ..+|+||||+|||++++.|||+|++.|.+++||+|+|++|+...
T Consensus 212 ~~~------~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 212 VGR------DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp CCC------SSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred hcC------CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 853 23699999999999999999999999999999999999998653
No 4
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=1e-34 Score=328.23 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEee
Q 002879 270 AADVAKSQFLATVSHEIRTPMNGVL-GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 348 (871)
Q Consensus 270 ~a~~aks~fla~iSHElRTPL~~I~-g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~ 348 (871)
+.++++++|+++++||+||||++|. |+.+++.....++..++|++.+..+..+|..|++++|++++++.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 4456788999999999999999999 666666544446677899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhc---CCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC---------eEEEEEE
Q 002879 349 NLRAILDDVLSLFSGKSQDK---GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG---------HIFVTVY 416 (871)
Q Consensus 349 ~l~~ll~~v~~~~~~~a~~k---~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G---------~I~v~v~ 416 (871)
|+.+++++++..+...+..+ .+.+.+..+. +..+.+|+.+|.|||.|||+||+||+..| .|.|.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~--~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV--AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEST--TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccC--CCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999999988 3344444433 34578899999999999999999999665 5777664
Q ss_pred EeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcc
Q 002879 417 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 496 (871)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~ 496 (871)
.. ...+.|+|+|+|+|||++.+++||+
T Consensus 274 ~~-----------------------------------------------------~~~v~i~V~D~G~GI~~~~~~~iF~ 300 (388)
T 1gkz_A 274 NN-----------------------------------------------------DVDLIIRISDRGGGIAHKDLDRVMD 300 (388)
T ss_dssp EC-----------------------------------------------------SSEEEEEEECCSCCCCTTTTTTTTS
T ss_pred eC-----------------------------------------------------CCEEEEEEEEeCCCcCHHHHHHhcC
Confidence 21 1257899999999999999999999
Q ss_pred cccccCCCC--------------------CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 002879 497 PFMQVGPSI--------------------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 551 (871)
Q Consensus 497 pF~q~~~s~--------------------~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~ 551 (871)
|||+.+.+. ++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|+||....
T Consensus 301 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 301 YHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp TTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred cccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 999987643 2334799999999999999999999999999999999999997543
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.3e-34 Score=327.86 Aligned_cols=219 Identities=18% Similarity=0.236 Sum_probs=175.4
Q ss_pred HHHHHhHhhhhh-----HHHHHHHHHHHHhcCCCCHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHhhc-CCeeeE
Q 002879 277 QFLATVSHEIRT-----PMNGVLGMLDMLMDTELDVTQ----QDYVR--TAQASGKALVSLINEVLDQAKVES-GKLELE 344 (871)
Q Consensus 277 ~fla~iSHElRT-----PL~~I~g~~~lL~~~~l~~~~----~~~l~--~i~~~~~~L~~lIndlLd~skie~-g~~~l~ 344 (871)
+|+++++||||| ||+.|.|+++++.....+... ++|++ .+...+.+| +|+++|++++.+. +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 589999999999 888889999998765444332 44777 478888898 9999999999988 677777
Q ss_pred e----EeecHHHHHHHHHHHHHHHHhh-----cCCEEEEEe--CCCCCceEEecHHHHHHHHHHHHHHhhccCCCCe---
Q 002879 345 A----VSFNLRAILDDVLSLFSGKSQD-----KGVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH--- 410 (871)
Q Consensus 345 ~----~~~~l~~ll~~v~~~~~~~a~~-----k~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~--- 410 (871)
. .++|+.++++++++.+...+.. +++.+.+.. .+..+..+.+|+.+|+|||.|||+||+||+..|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 7 8999999999999999999987 999988754 1233457899999999999999999999997664
Q ss_pred -----EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCC
Q 002879 411 -----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 485 (871)
Q Consensus 411 -----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 485 (871)
|.|.+... ...+.|+|+|+|+|
T Consensus 255 ~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~G 281 (394)
T 2btz_A 255 LILPPIKVMVALG-----------------------------------------------------EEDLSIKMSDRGGG 281 (394)
T ss_dssp SCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSCC
T ss_pred CCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCCC
Confidence 77776421 12578999999999
Q ss_pred CChhhHhhhcccccccCCC-----CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 486 IPLEAQSRIFTPFMQVGPS-----ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 486 I~~e~~~~iF~pF~q~~~s-----~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 282 I~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 282 VPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp CCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred CCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9999999999999998775 4556789999999999999999999999999999999999999854
No 6
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=3e-34 Score=324.85 Aligned_cols=219 Identities=16% Similarity=0.218 Sum_probs=186.0
Q ss_pred HHHHHHhHhhhhh-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHhhcCCeee
Q 002879 276 SQFLATVSHEIRT-----PMNGVLGMLDMLMDTE----LDVTQQDYVR--TAQASGKALVSLINEVLD-QAKVESGKLEL 343 (871)
Q Consensus 276 s~fla~iSHElRT-----PL~~I~g~~~lL~~~~----l~~~~~~~l~--~i~~~~~~L~~lIndlLd-~skie~g~~~l 343 (871)
.+|+++++||||| ||+.|.|+++++.... ..+..++|++ .+.+.+.+| +|+++|+ +++. .+...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3578889999999 8888899999776543 2344578888 688899999 9999999 7776 777777
Q ss_pred Ee----EeecHHHHHHHHHHHHHHHHhhc-----CCEEEEEe--CCCCCceEEecHHHHHHHHHHHHHHhhccCCCCe--
Q 002879 344 EA----VSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-- 410 (871)
Q Consensus 344 ~~----~~~~l~~ll~~v~~~~~~~a~~k-----~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-- 410 (871)
.. .++|+.++++++++.+...+..+ ++.+.+.+ .+..+..+.+|+.+|+|||.|||+||+||+..|+
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66 78999999999999999999998 99888754 2233457899999999999999999999997654
Q ss_pred ------EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCC
Q 002879 411 ------IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 484 (871)
Q Consensus 411 ------I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 484 (871)
|.|.+... ...+.|+|+|+|+
T Consensus 253 ~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~ 279 (394)
T 2e0a_A 253 QPSLTPIEVIVVLG-----------------------------------------------------KEDLTIKISDRGG 279 (394)
T ss_dssp SSSCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSC
T ss_pred cCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCC
Confidence 77776421 1257899999999
Q ss_pred CCChhhHhhhcccccccCCC------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 485 GIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 485 GI~~e~~~~iF~pF~q~~~s------~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
|||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 280 GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 280 GVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp CCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 99999999999999998875 5566789999999999999999999999999999999999999753
No 7
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.3e-35 Score=307.36 Aligned_cols=215 Identities=18% Similarity=0.280 Sum_probs=134.8
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHH
Q 002879 275 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 353 (871)
Q Consensus 275 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~l 353 (871)
+.+|++.+||||||||++|.++++++.....+ +..+++++.+..+++++..++++++++++++.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 46899999999999999999999988655433 33467888899999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCC-eEEEEEEEeeccccchhhhhhhc
Q 002879 354 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETELS 432 (871)
Q Consensus 354 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~~~~~~ 432 (871)
+++++..+...+..+++.+.+.+++.. ..+.+|+.+|.|||.||++||+||++.| .|.|.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~--~------------- 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS-IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--A------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS-CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--S-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc-eEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc--c-------------
Confidence 999999999999999999999987763 4678999999999999999999999665 4555431 0
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002879 433 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 512 (871)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 512 (871)
+ .|.|+|+|+||+++.++++|+||++.+. ...+|+
T Consensus 146 --------------------------------------~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~ 180 (222)
T 3jz3_A 146 --------------------------------------D----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGS 180 (222)
T ss_dssp --------------------------------------S----EEEEECSCC----------------------------
T ss_pred --------------------------------------C----eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcc
Confidence 0 1889999999999999999999998542 344699
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 513 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 513 GLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
||||+|||++++.|||+|+++|.+++||+|+|++|...
T Consensus 181 GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 181 GLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp -CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC-
T ss_pred cccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCC
Confidence 99999999999999999999999999999999999754
No 8
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=1.1e-33 Score=321.78 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=179.6
Q ss_pred HHHHhHhhhhh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhc----C---
Q 002879 278 FLATVSHEIRT-----PMNGVLGMLDMLMDTELD----VTQQDYVRT--AQASGKALVSLINEVLDQAKVES----G--- 339 (871)
Q Consensus 278 fla~iSHElRT-----PL~~I~g~~~lL~~~~l~----~~~~~~l~~--i~~~~~~L~~lIndlLd~skie~----g--- 339 (871)
+++.++||||| ||+.|.|+++++.....+ +..++|++. +...+.+| +|+++|++++.+. +
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~~ 185 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHRK 185 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------C
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCcc
Confidence 44455599999 999999999987754433 234677887 77778888 9999999999976 3
Q ss_pred CeeeEeEeecHHHHHHHHHHHHHHHHhhc-----CCEEEEEe--CCCCCceEEecHHHHHHHHHHHHHHhhccCCCC---
Q 002879 340 KLELEAVSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG--- 409 (871)
Q Consensus 340 ~~~l~~~~~~l~~ll~~v~~~~~~~a~~k-----~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G--- 409 (871)
.+.+...++|+.+++++++..+...+..+ ++.+.+.+ .+..+..+.+|+.+|+|||.|||+||+||+..|
T Consensus 186 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 265 (407)
T 2q8g_A 186 HIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHAN 265 (407)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 56677889999999999999999999988 99998876 123345788999999999999999999999765
Q ss_pred -----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCC
Q 002879 410 -----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 484 (871)
Q Consensus 410 -----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 484 (871)
.|.|.+... ...+.|+|+|+|+
T Consensus 266 ~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~ 292 (407)
T 2q8g_A 266 RGVYPPIQVHVTLG-----------------------------------------------------NEDLTVKMSDRGG 292 (407)
T ss_dssp TCCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSC
T ss_pred CCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEecCC
Confidence 477776421 1257899999999
Q ss_pred CCChhhHhhhcccccccCCC------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 485 GIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 485 GI~~e~~~~iF~pF~q~~~s------~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
|||++.+++||+|||+.+.+ ..+..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|..
T Consensus 293 GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~ 363 (407)
T 2q8g_A 293 GVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKAL 363 (407)
T ss_dssp CCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred CCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCC
Confidence 99999999999999998775 344568999999999999999999999999999999999999974
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=100.00 E-value=4.9e-33 Score=317.29 Aligned_cols=220 Identities=18% Similarity=0.243 Sum_probs=170.6
Q ss_pred HHHHHHHhHhhhhhHHH-----HHHHHHHHHhcCCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh-cCCee
Q 002879 275 KSQFLATVSHEIRTPMN-----GVLGMLDMLMDTELD----VTQQDYVRTAQAS--GKALVSLINEVLDQAKVE-SGKLE 342 (871)
Q Consensus 275 ks~fla~iSHElRTPL~-----~I~g~~~lL~~~~l~----~~~~~~l~~i~~~--~~~L~~lIndlLd~skie-~g~~~ 342 (871)
+.+|. +++|||||||+ .|.|+++++.....+ ++.+++++.+..+ +.+| +|+++|.+.+.. .+...
T Consensus 118 ~~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 34565 56699999999 789999987653222 3346778886655 7777 999998776543 33332
Q ss_pred e----EeEeecHHHHHHHHHHHHHHHHhh-----cCCEEEEEeC--CCCCceEEecHHHHHHHHHHHHHHhhccCCCC--
Q 002879 343 L----EAVSFNLRAILDDVLSLFSGKSQD-----KGVELAVYIS--DRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-- 409 (871)
Q Consensus 343 l----~~~~~~l~~ll~~v~~~~~~~a~~-----k~i~l~~~~~--~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-- 409 (871)
. ...++|+.++++++++.+...+.. +++.+.+... +..+..+.+|+.+|+|||.|||+||+||+..|
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 347899999999999999998877 8888876442 23345788999999999999999999999765
Q ss_pred -------eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEec
Q 002879 410 -------HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 482 (871)
Q Consensus 410 -------~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 482 (871)
.|.|.+... ...+.|+|+|+
T Consensus 275 ~~~~~~~~I~I~~~~~-----------------------------------------------------~~~v~I~V~D~ 301 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLG-----------------------------------------------------KEDLSIKISDL 301 (419)
T ss_dssp TCSSCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEEC
Confidence 477766421 12578999999
Q ss_pred CCCCChhhHhhhcccccccCCC------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 483 GQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 483 G~GI~~e~~~~iF~pF~q~~~s------~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
|+|||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|+++|.+|.||+|+|++|...
T Consensus 302 G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 302 GGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp SCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred CCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 9999999999999999998765 4556789999999999999999999999999999999999999753
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=2.7e-32 Score=302.52 Aligned_cols=214 Identities=28% Similarity=0.417 Sum_probs=181.4
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHH
Q 002879 273 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 351 (871)
Q Consensus 273 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~ 351 (871)
.++.+|++.++|||||||++|.++++++.+...+ +..+++++.+..++++|..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 4567899999999999999999999998765433 345789999999999999999999999994 335677889999
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccC-CCCeEEEEEEEeeccccchhhhhh
Q 002879 352 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE 430 (871)
Q Consensus 352 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-~~G~I~v~v~~~~~~~~~~~~~~~ 430 (871)
+++++++..+...+..+++.+.+.+++.. ..+.+|+.+|.||+.||++||+||+ +.|.|.|++...+
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~----------- 274 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMY----------- 274 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEET-----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecC-----------
Confidence 99999999999999999999998887653 4688999999999999999999999 5678877764321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCC
Q 002879 431 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 510 (871)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 510 (871)
..+.|+|+|+|+|||++.+++||+||++.+ .+
T Consensus 275 ------------------------------------------~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~ 306 (349)
T 3a0r_A 275 ------------------------------------------TKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQ 306 (349)
T ss_dssp ------------------------------------------TEEEEEEEEESCCCCGGGGTTTSSSCCCC---------
T ss_pred ------------------------------------------CEEEEEEEECCCCCChHHHhhcCCCCccCC------CC
Confidence 247899999999999999999999999743 36
Q ss_pred cccccHHHHHHHHH-HcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 511 GTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 511 GtGLGLsI~k~lv~-~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
|+||||+|||++++ .|||.|+++|.++ ||+|+|++|...
T Consensus 307 g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 307 GTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 346 (349)
T ss_dssp ---CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEESCT
T ss_pred CccchHHHHHHHHHHhCCCEEEEEeCCC-cEEEEEEecCCC
Confidence 99999999999999 8999999999865 999999999854
No 11
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=100.00 E-value=1.9e-32 Score=287.91 Aligned_cols=215 Identities=23% Similarity=0.385 Sum_probs=183.4
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecH
Q 002879 272 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 350 (871)
Q Consensus 272 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l 350 (871)
.+++.+|++.++|||||||++|.+++++|.+...+ +..+++++.+..+++++..++++++++++.+.+ ...++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 34567899999999999999999999999876654 456789999999999999999999999987765 3467999
Q ss_pred HHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC-CCeEEEEEEEeeccccchhhhh
Q 002879 351 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVET 429 (871)
Q Consensus 351 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~ 429 (871)
..++++++..+...+..+++.+.+.+++ ..+.+|+..|.|||.||+.||+||++ .|.|.|.+...+
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~---------- 153 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDN---------- 153 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEET----------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeC----------
Confidence 9999999999999999999999887654 46889999999999999999999994 566777664321
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCC
Q 002879 430 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 509 (871)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 509 (871)
..+.|+|+|+|+||+++.++++|+||++.+ ..
T Consensus 154 -------------------------------------------~~~~i~i~D~G~gi~~~~~~~if~~~~~~~-----~~ 185 (244)
T 3d36_A 154 -------------------------------------------GRVLIRIADTGVGMTKEQLERLGEPYFTTK-----GV 185 (244)
T ss_dssp -------------------------------------------TEEEEEEEECSSCCCHHHHHHTTSTTCCSS-----GG
T ss_pred -------------------------------------------CEEEEEEEecCCCCCHHHHHHHhcccccCC-----CC
Confidence 247899999999999999999999999743 24
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 002879 510 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 551 (871)
Q Consensus 510 ~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~ 551 (871)
+|+||||+|||++++.|||+|++.|.+++||+|+|++|+...
T Consensus 186 ~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 186 KGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp GCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred CCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 689999999999999999999999999999999999998654
No 12
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.98 E-value=1.6e-31 Score=283.01 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=152.5
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHHH
Q 002879 278 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 357 (871)
Q Consensus 278 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~v 357 (871)
+.++|||||||||++|.|++++|.+...++..+++++.|..+++++.. +++++++..+.. ....++++.++.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~----ll~~~r~~~~~~-~~~~~~~~~~l~--- 120 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLAD----LLQFTRVAFGAS-ASAENFDSRELE--- 120 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHH----HHHHHHHHTTCC-SSCCCEEHHHHH---
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH----HHHHHHHhhccc-cccccccHHHHH---
Confidence 667899999999999999999998877777788889999988877655 456666655432 234467776543
Q ss_pred HHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCC-CeEEEEEEEeeccccchhhhhhhccccC
Q 002879 358 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKN 436 (871)
Q Consensus 358 ~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~ 436 (871)
..+...+..+++++...+++.. ++..+.|++.||++||+||++. |.|.|++...+
T Consensus 121 -~~~~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~----------------- 176 (247)
T 4fpp_A 121 -KLAQGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAAD----------------- 176 (247)
T ss_dssp -HHHHHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEET-----------------
T ss_pred -HHHHHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEEC-----------------
Confidence 3445556778888877554321 3578899999999999999976 56777664321
Q ss_pred cCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCC--CChhhHhhhcccccccCCCCCCCCCcccc
Q 002879 437 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG--IPLEAQSRIFTPFMQVGPSISRTHGGTGI 514 (871)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~~~~iF~pF~q~~~s~~~~~~GtGL 514 (871)
..+.|+|+|+|+| |+++..+++|++|++. ..+|+||
T Consensus 177 ------------------------------------~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~------~~~G~GL 214 (247)
T 4fpp_A 177 ------------------------------------GRFSIIADAKGPRARLRPEVLAGLKGEPLAE------GLGGPWV 214 (247)
T ss_dssp ------------------------------------TEEEEEEEEESTTCCCCHHHHHHHTTCCCCS------SCHHHHH
T ss_pred ------------------------------------CEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC------CCCCccH
Confidence 2467888888866 7899999999999753 3469999
Q ss_pred cHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 002879 515 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 547 (871)
Q Consensus 515 GLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp 547 (871)
||+|||+||+.|||+|+++|.+| |++|+|+||
T Consensus 215 GLai~~~iv~~hGG~i~v~s~~~-G~~f~v~LP 246 (247)
T 4fpp_A 215 QAAYLNALVRAAGGQIAVEIGED-RASIAAWVP 246 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEcCC-EEEEEEEec
Confidence 99999999999999999999876 999999998
No 13
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.95 E-value=6.7e-28 Score=270.94 Aligned_cols=203 Identities=17% Similarity=0.232 Sum_probs=160.4
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHH
Q 002879 272 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 351 (871)
Q Consensus 272 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~ 351 (871)
+.+|.+|+.+++||||||++.|.++++.+.. +.+..++++|..+++++++++.- ...+++.
T Consensus 7 ~~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~~--------~~~~~~~ 67 (379)
T 1b3q_A 7 DIEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVMK--------IRMVPIS 67 (379)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHHH--------HHEEETH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHHH--------cceecHH
Confidence 3568899999999999999999988765543 56788889999999999998732 1346778
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHH---HHHHHHHHHHHHhhccC-------------CCCeEEEEE
Q 002879 352 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG---RFRQIITNLMGNSIKFT-------------EKGHIFVTV 415 (871)
Q Consensus 352 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~---rl~qIl~NLl~NAiKfT-------------~~G~I~v~v 415 (871)
.+++.+...++..+..++..+.+.++... +..|+. ++.|+|.||+.||+||+ +.|.|.|++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~ 144 (379)
T 1b3q_A 68 FVFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSA 144 (379)
T ss_dssp HHHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEE
Confidence 99999999999999888877777776442 345775 55666999999999996 567887776
Q ss_pred EEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhH----
Q 002879 416 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ---- 491 (871)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~---- 491 (871)
+... ..+.|+|+|+|+||+++.+
T Consensus 145 ~~~~-----------------------------------------------------~~v~i~V~D~G~Gi~~~~~~~~a 171 (379)
T 1b3q_A 145 RHEG-----------------------------------------------------NNVVIEVEDDGRGIDKEKIIRKA 171 (379)
T ss_dssp EEET-----------------------------------------------------TEEEEEEEECSCCCCHHHHHHHH
T ss_pred EEeC-----------------------------------------------------CEEEEEEEECCCCCCHHHHHHHH
Confidence 4321 2578999999999999987
Q ss_pred --------------------hhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 492 --------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 492 --------------------~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
++||+|||+.... .+..+|+||||+|||++++.|||+|+++|.+|+||+|++++|+..
T Consensus 172 ~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 172 IEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp HHSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred HHcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 8999999886544 234579999999999999999999999999999999999999864
No 14
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.94 E-value=3.9e-26 Score=217.48 Aligned_cols=121 Identities=31% Similarity=0.482 Sum_probs=111.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
+.|||||||++.+|.+++.+|++.||. |.+|.||.+|++++. .+.||+||+|++||+|||+|++++||+.+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~-~~~~DlillD~~MP~mdG~el~~~ir~~~------- 83 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK-KGDFDFVVTDWNMPGMQGIDLLKNIRADE------- 83 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHST-------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhCC-------
Confidence 358999999999999999999999986 778999999999985 57899999999999999999999999742
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+++|||++||....+...+|+++|++|||+|||+.++|..+|++++..
T Consensus 84 -------------~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 84 -------------ELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp -------------TTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred -------------CCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 24689999999999999999999999999999999999999999998763
No 15
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.92 E-value=1.9e-24 Score=223.30 Aligned_cols=190 Identities=9% Similarity=0.079 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeec
Q 002879 272 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 349 (871)
Q Consensus 272 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~ 349 (871)
...+.++...+.|++++||++|.++++++... ...+...+.+..+......+...+.+++... .+.+
T Consensus 25 ~~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~ 93 (218)
T 3ehh_A 25 LEERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIR 93 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcC
Confidence 34567889999999999999999999987542 2233456777778877777777777776432 2457
Q ss_pred HHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhh
Q 002879 350 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 429 (871)
Q Consensus 350 l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 429 (871)
+.+.++.+...+ ..+++.+.+.++...+.....++..+.+|+.||++||+||++.|.|.|.+...+
T Consensus 94 l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~---------- 159 (218)
T 3ehh_A 94 LKDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLW---------- 159 (218)
T ss_dssp HHHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEET----------
T ss_pred HHHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeC----------
Confidence 888877776655 467888888776554444456888999999999999999998888887775321
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCC
Q 002879 430 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 509 (871)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 509 (871)
..+.|+|.|+|+|||++..
T Consensus 160 -------------------------------------------~~~~i~V~D~G~Gi~~~~~------------------ 178 (218)
T 3ehh_A 160 -------------------------------------------KEVVITVSDDGTFKGEENS------------------ 178 (218)
T ss_dssp -------------------------------------------TEEEEEEEESSCCCC----------------------
T ss_pred -------------------------------------------CEEEEEEEECCcCCCCCCC------------------
Confidence 2478999999999999765
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 510 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 510 ~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
+|+||||+|||.+++.|||+|++.|.+ ||+|+|++|+.
T Consensus 179 ~g~GlGL~~~~~~v~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 179 FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp ----CHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEeCCC--CeEEEEEEecC
Confidence 589999999999999999999999998 99999999974
No 16
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.92 E-value=2.5e-24 Score=209.25 Aligned_cols=145 Identities=23% Similarity=0.364 Sum_probs=127.6
Q ss_pred EeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccch
Q 002879 346 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 425 (871)
Q Consensus 346 ~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~ 425 (871)
++++|.+++++++..+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||++. .|.|++...
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~------- 71 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQT------- 71 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEec-------
Confidence 47899999999999999999999999999887654 47899999999999999999999976 666655321
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC
Q 002879 426 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 505 (871)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~ 505 (871)
...+.|+|+|+|+||+++.++++|+||++.+.+
T Consensus 72 ----------------------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~- 104 (152)
T 1id0_A 72 ----------------------------------------------DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL- 104 (152)
T ss_dssp ----------------------------------------------SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-
T ss_pred ----------------------------------------------CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-
Confidence 124789999999999999999999999986542
Q ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 506 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 506 ~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
.+|+||||+|||++++.|||+|.++|.++.||+|+|++|+..
T Consensus 105 ---~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 105 ---RPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp ---CTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred ---CCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 368999999999999999999999999999999999999854
No 17
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.92 E-value=2.2e-24 Score=209.40 Aligned_cols=146 Identities=16% Similarity=0.302 Sum_probs=116.5
Q ss_pred EeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeecccc
Q 002879 344 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 423 (871)
Q Consensus 344 ~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~ 423 (871)
+..++||.+++++++..+...+ +++.+.+..+ .+..+.+|+.+|.||+.||++||+||++.|.|.|++...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~---- 75 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR---- 75 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEET----
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC----
Confidence 3568999999999999987765 4566665543 3457889999999999999999999999887777664321
Q ss_pred chhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCC
Q 002879 424 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 503 (871)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~ 503 (871)
..+.|+|+|+|+||+++.++++|+||++.+.
T Consensus 76 -------------------------------------------------~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~ 106 (150)
T 1ysr_A 76 -------------------------------------------------AGVEIAIDDNGSGVPEGERQVVFERFSRGST 106 (150)
T ss_dssp -------------------------------------------------TEEEEEEEESSSCCCGGGHHHHHTSCC----
T ss_pred -------------------------------------------------CEEEEEEEECCCCCCHHHHHHHhcccccCCC
Confidence 2478999999999999999999999998643
Q ss_pred CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 504 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 504 s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
+ ..+|+||||+|||++++.|||+|++.|.++.||+|++++|+.
T Consensus 107 ~---~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 107 A---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp ----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred C---CCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 2 357999999999999999999999999999999999999963
No 18
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.91 E-value=6.5e-24 Score=212.34 Aligned_cols=153 Identities=28% Similarity=0.469 Sum_probs=126.6
Q ss_pred eecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC-CCeEEEEEEEeeccccch
Q 002879 347 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSI 425 (871)
Q Consensus 347 ~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~ 425 (871)
++||.++++++++.+... ..+++.+.+.+++. +..+.+|+.+|.+||.|||+||+||+. .|.|.|.+....
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~------ 73 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNE------ 73 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEET------
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEcc------
Confidence 689999999999999988 88999999888764 346889999999999999999999995 467777664321
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC
Q 002879 426 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 505 (871)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~ 505 (871)
+...+.|+|.|+|+||+++.++++|+||++.+.+.
T Consensus 74 ---------------------------------------------~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~ 108 (177)
T 3sl2_A 74 ---------------------------------------------EEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKAR 108 (177)
T ss_dssp ---------------------------------------------TTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC---
T ss_pred ---------------------------------------------CCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCC
Confidence 11257899999999999999999999999987776
Q ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCC
Q 002879 506 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 552 (871)
Q Consensus 506 ~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~ 552 (871)
+...+|+||||+|||++++.|||+|.+.|.++.||+|++++|+....
T Consensus 109 ~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~~ 155 (177)
T 3sl2_A 109 TRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQ 155 (177)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC--
T ss_pred CCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCCc
Confidence 66778999999999999999999999999999999999999997643
No 19
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.91 E-value=2e-23 Score=202.59 Aligned_cols=146 Identities=30% Similarity=0.466 Sum_probs=126.1
Q ss_pred EeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccC-CCCeEEEEEEEeeccc
Q 002879 344 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVV 422 (871)
Q Consensus 344 ~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-~~G~I~v~v~~~~~~~ 422 (871)
+..++||.+++++++..+...+..+++.+.+.+++. +..+.+|+..|.||+.||++||+||+ +.|.|.|++...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~---- 76 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM---- 76 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC----
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec----
Confidence 456899999999999999999999999999988754 44688999999999999999999999 567777766421
Q ss_pred cchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccC
Q 002879 423 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 502 (871)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~ 502 (871)
...+.|+|+|+|+||+++.++++|+||++.+
T Consensus 77 -------------------------------------------------~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 77 -------------------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp -------------------------------------------------SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred -------------------------------------------------CCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 1257899999999999999999999998642
Q ss_pred CCCCCCCCcccccHHHHHHHHH-HcCCEEEEEEeCCCeEEEEEEEEeCC
Q 002879 503 PSISRTHGGTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 550 (871)
Q Consensus 503 ~s~~~~~~GtGLGLsI~k~lv~-~~gG~I~v~S~~g~Gs~F~~~lp~~~ 550 (871)
.+|+||||+|||++++ .|||.+.+.+.++ |++|+|++|...
T Consensus 108 ------~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~-g~~~~i~lP~~~ 149 (152)
T 3a0y_A 108 ------TQGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 149 (152)
T ss_dssp --------CCCCSHHHHHHHHHTTTSCEEEEEEETT-EEEEEEEEESCC
T ss_pred ------CCCCCcCHHHHHHHHHHhCCcEEEEecCCC-CEEEEEEeCCCC
Confidence 3689999999999999 9999999999865 999999999753
No 20
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.91 E-value=4.1e-24 Score=219.61 Aligned_cols=123 Identities=37% Similarity=0.584 Sum_probs=107.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC-EEEEEcCHHHHHHHhCCC------------CCccEEEEeCCCCCCCHHHHHHH
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPP------------HQFDACFMDIQMPEMDGFEATKI 790 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eAl~~l~~~------------~~~DlilmDi~MP~mdG~e~~~~ 790 (871)
+.+||||||++.++..++.+|++.|+ .|..+.++.+|++.+... ..||+||+|++||+|||++++++
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 46999999999999999999999998 999999999999988531 37999999999999999999999
Q ss_pred HHhhhccccccccccccchhhhccCCCCCccEEEEccCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 791 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 791 IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
||+.+.. ..+++|||++|+.. +.+...+|+++|+++||.||++ +|..+|++++...
T Consensus 141 lr~~~~~------------------~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 141 IRKVEKS------------------YGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHT------------------TTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHhhhhh------------------cCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 9985321 13579999999998 7788999999999999999999 9999999987653
No 21
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.91 E-value=1.1e-23 Score=207.10 Aligned_cols=149 Identities=23% Similarity=0.322 Sum_probs=124.4
Q ss_pred eeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeecc
Q 002879 342 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 421 (871)
Q Consensus 342 ~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~ 421 (871)
++...++||.+++++++..+.. ++..+.+.+.+. +..+.+|+.+|.||+.||++||+||+ .|.|.|.+...+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~-- 75 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEP-- 75 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEET--
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcC--
Confidence 4556789999999999998653 344555554433 34688999999999999999999999 888888775321
Q ss_pred ccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccccccc
Q 002879 422 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 501 (871)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~ 501 (871)
..+.|.|+|+|+||+++.++++|+||++.
T Consensus 76 ---------------------------------------------------~~~~i~i~D~G~gi~~~~~~~~f~~f~~~ 104 (161)
T 1bxd_A 76 ---------------------------------------------------NRAWFQVEDDGPGIAPEQRKHLFQPFVRG 104 (161)
T ss_dssp ---------------------------------------------------TEEEEEEEEESSCSCTTGGGCSSCCCCCC
T ss_pred ---------------------------------------------------CEEEEEEEeCCCCCCHHHHHHhCCCceeC
Confidence 24789999999999999999999999997
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 002879 502 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 551 (871)
Q Consensus 502 ~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~ 551 (871)
+.+ +..+|+||||+|||++++.|||+|+++|.++.|++|++++|+...
T Consensus 105 ~~~--~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 105 DSA--RTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp SCC--CCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred CCC--CCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 653 334799999999999999999999999999999999999998653
No 22
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.90 E-value=2.1e-23 Score=204.14 Aligned_cols=156 Identities=26% Similarity=0.418 Sum_probs=111.2
Q ss_pred eeEeEeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCC--CCeEEEEEEEee
Q 002879 342 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE--KGHIFVTVYLVE 419 (871)
Q Consensus 342 ~l~~~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~--~G~I~v~v~~~~ 419 (871)
.++..+++|.+++++++..+... ..+++.+.+.+++..+ .+.+|+.+|.||+.||++||+||+. .|.|.|++....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC-CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC-eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 45677899999999999999987 8889999998877665 3789999999999999999999997 677777765432
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhccccc
Q 002879 420 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 499 (871)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 499 (871)
.... ....+...+.|+|+|+|+||+++.++++|+||+
T Consensus 80 ~~~~-------------------------------------------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~ 116 (160)
T 1r62_A 80 QLTL-------------------------------------------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV 116 (160)
T ss_dssp EEEE-------------------------------------------TTEEEEEEEEEEEEEECTTC-------------
T ss_pred cccc-------------------------------------------cccccccEEEEEEEeCCCCCCHHHHHHhhCccc
Confidence 2000 001122368899999999999999999999999
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 500 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 500 q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
+.+ .+|+||||+||+++++.|||+|+++|.++. |+|+|++|+.
T Consensus 117 ~~~------~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 117 SGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp -------------CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred cCC------CCCCccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 743 368999999999999999999999999987 9999999974
No 23
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.90 E-value=5.8e-22 Score=210.39 Aligned_cols=239 Identities=21% Similarity=0.285 Sum_probs=175.0
Q ss_pred cccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcC
Q 002879 572 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 651 (871)
Q Consensus 572 ~~~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 651 (871)
..++|++++++++++..+.....+|+.||+++..+.+. ....++.+++|........
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~-------------- 63 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQ-------------- 63 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCC--------------
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCccccc--------------
Confidence 45789999999999999999999999999999887641 2345677887754322110
Q ss_pred CCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCCCCCCCCCCCCc-chhhhcCCCCeEEEE
Q 002879 652 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIV 730 (871)
Q Consensus 652 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ILvV 730 (871)
....+.+....... .........+.+|.....+...+.+...............+. ........+.+||||
T Consensus 64 ---~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILiv 135 (254)
T 2ayx_A 64 ---GRAVVTFCRRHIGI-----PLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVV 135 (254)
T ss_dssp ---SSEEEEECSSCCCS-----CCTTSTTEEEECSSCCSHHHHHHHHHHTCCCSCCCCCCSCCCSCCCCCCCCCCEEEEE
T ss_pred ---cceEEEEecccCCC-----cccccCCceeccccchHHHHHHHHHHhhhccccccccccCCCccccccCCCCCEEEEE
Confidence 01122221111000 001122346678887777777777665322111100000000 001112345789999
Q ss_pred eCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchh
Q 002879 731 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 731 dDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
|||+.++..++.+|++.||.|..+.+|.+|++.+. .+.||+||||++||+|||++++++||+..
T Consensus 136 dd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~dlvl~D~~mp~~~G~~l~~~ir~~~--------------- 199 (254)
T 2ayx_A 136 DDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLSDVNMPNMDGYRLTQRIRQLG--------------- 199 (254)
T ss_dssp ESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH-HSCCSEEEEEESSCSSCCHHHHHHHHHHH---------------
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhcC---------------
Confidence 99999999999999999999999999999999985 46799999999999999999999999842
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
+++|||++|+....+...+|+++||++||.||++.++|...|.+++.
T Consensus 200 -------~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 200 -------LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp -------CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred -------CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999998753
No 24
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.89 E-value=2.4e-22 Score=213.98 Aligned_cols=237 Identities=20% Similarity=0.261 Sum_probs=171.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
.++|+||+++..+......|.. +|+.+...+... ++... ....++.+++|..+...++. .++..+++. .
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~~~-~~~~~--~~~~~dlvllD~~mP~~~G~---~~~~~lr~~----~ 74 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLE-GARHC--QGDEYVVALVDLTLPDAPSG---EAVKVLLER----G 74 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEESSTG-GGTTC--CTTTEEEEEEESCBTTBTTS---HHHHHHHHT----T
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEeChHH-HHHHh--hcCCCcEEEEeCCCCCCCHH---HHHHHHHhC----C
Confidence 4799999999888877777755 689887665543 33322 22468899998776554432 234445442 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHH--HHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS--LQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 733 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn 733 (871)
..+++++...+....... -..|...++.||...+..... +.+.. .....+||||||+
T Consensus 75 ~pvi~lt~~~~~~~~~~a-~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~--------------------~~~~~~ILivDD~ 133 (259)
T 3luf_A 75 LPVVILTADISEDKREAW-LEAGVLDYVMKDSRHSLQYAVGLVHRLY--------------------LNQQIEVLVVDDS 133 (259)
T ss_dssp CCEEEEECC-CHHHHHHH-HHTTCCEEEECSSHHHHHHHHHHHHHHH--------------------HHTTCEEEEECSC
T ss_pred CCEEEEEccCCHHHHHHH-HHCCCcEEEeCCchhHHHHHHHhhhhHh--------------------hcCCCcEEEEeCC
Confidence 233333332222111111 123667899999765532221 11111 1124589999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhc
Q 002879 734 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 813 (871)
Q Consensus 734 ~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~ 813 (871)
+.++..+...|+..|+.|..+.||.+|++.+.....||+||+|++||+|||++++++||+..
T Consensus 134 ~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~------------------ 195 (259)
T 3luf_A 134 RTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERY------------------ 195 (259)
T ss_dssp HHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcc------------------
Confidence 99999999999999999999999999999885333589999999999999999999999742
Q ss_pred cCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 814 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 814 ~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
...++|||++|+....+...+|+++|++|||.||++.++|..+|++.+.
T Consensus 196 --~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 196 --SKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp --CTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred --CCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 1346899999999999999999999999999999999999999987653
No 25
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.89 E-value=6.5e-23 Score=207.31 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=122.5
Q ss_pred EeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccC-------------CCCeEE
Q 002879 346 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-------------EKGHIF 412 (871)
Q Consensus 346 ~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-------------~~G~I~ 412 (871)
.+++|.++++++...+...+..+++.+.+.++.........+..++.|||.||++||+||+ +.|.|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~ 82 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 82 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEE
Confidence 4689999999999999999999999988887755332223345667777999999999995 456777
Q ss_pred EEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhH-
Q 002879 413 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ- 491 (871)
Q Consensus 413 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~- 491 (871)
|.+...+ ..+.|+|+|+|+||+++.+
T Consensus 83 I~~~~~~-----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 83 LSARHEG-----------------------------------------------------NNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp EEEEEET-----------------------------------------------------TEEEEEEEECSSCCCHHHHH
T ss_pred EEEEecC-----------------------------------------------------CEEEEEEEeCCCCcCHHHHh
Confidence 7664321 2578999999999999986
Q ss_pred -----------------------hhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 002879 492 -----------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 548 (871)
Q Consensus 492 -----------------------~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~ 548 (871)
+++|+||++.... .+..+|+||||+||+++++.|||+|++.|.++.||+|++++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 110 RKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp HHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred hhhhhccchhhhhhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 9999999986432 2334689999999999999999999999999999999999997
No 26
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.87 E-value=1.5e-23 Score=196.14 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=102.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
..|||||||++.++..++.+|++.||+|+ +|.||.+|++++. .+.||+||+|++||+|||++++++||+.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~-~~~~DlvllDi~mP~~~G~el~~~lr~~-------- 78 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR-KGQFDIAIIDVNLDGEPSYPVADILAER-------- 78 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH-HCCSSEEEECSSSSSCCSHHHHHHHHHT--------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHcC--------
Confidence 35899999999999999999999999986 7999999999985 5789999999999999999999999962
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
++|||++||+.+.+. +.++|+++||.|||+.++|..+|+++.+.
T Consensus 79 ----------------~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 79 ----------------NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp ----------------CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred ----------------CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 589999999876554 34689999999999999999999988653
No 27
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.85 E-value=1.1e-20 Score=176.57 Aligned_cols=119 Identities=32% Similarity=0.444 Sum_probs=110.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++..+..++..|++.||.|..+.+|.+|++.+. .+.||+||+|++||+|||++++++||+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~-~~~~dlvllD~~~p~~~g~~~~~~l~~~~--------- 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-EFTPDLIVLXIMMPVMDGFTVLKKLQEKE--------- 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-TBCCSEEEECSCCSSSCHHHHHHHHHTST---------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCCCCcHHHHHHHHHhcc---------
Confidence 58999999999999999999999999999999999999995 57899999999999999999999999732
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+++|||++|+....+...+|+++|+++|+.||++.++|..+|++.+.
T Consensus 73 -----------~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 73 -----------EWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp -----------TTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred -----------cccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 2357999999999999999999999999999999999999999988754
No 28
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.83 E-value=5.8e-20 Score=170.89 Aligned_cols=116 Identities=31% Similarity=0.515 Sum_probs=108.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++..+..++..|++.||.|.++.++.+|++.+. .+.||+||+|+.||+|||++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlii~D~~~p~~~g~~~~~~lr~~---------- 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDGVEVCREVRKK---------- 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TTCCSEEEEETTSTTTHHHHHHHHHHTT----------
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999985 5679999999999999999999999962
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.++|||++|+........+++++|+++|+.||++.++|..+|++.+.
T Consensus 72 -------------~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 72 -------------YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp -------------CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred -------------CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 25899999999999999999999999999999999999999988764
No 29
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.83 E-value=4.8e-20 Score=175.57 Aligned_cols=121 Identities=26% Similarity=0.398 Sum_probs=110.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+. .+.||+||+|+.||+|||++++++||+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~lr~~~-------- 74 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-KNLPDALICDVLLPGIDGYTLCKRVRQHP-------- 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHSG--------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHcCC--------
Confidence 358999999999999999999999999999999999999885 46799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+++|||++|+..+.+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 75 ------------~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 75 ------------LTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp ------------GGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ------------CcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 13468999999999999999999999999999999999999999987653
No 30
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.83 E-value=9.9e-20 Score=172.70 Aligned_cols=121 Identities=35% Similarity=0.564 Sum_probs=108.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC-EEEEEcCHHHHHHHhCC----CCCccEEEEeCCCCCCCHHHHHHHHHhhhcccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMP----PHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 799 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eAl~~l~~----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 799 (871)
.+||||||++.++..++.+|+..|+ .|..+.+|.+|++.+.. ...||+||+|++||+|||++++++||+..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~---- 78 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL---- 78 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS----
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc----
Confidence 4799999999999999999999997 58899999999998742 15699999999999999999999999631
Q ss_pred ccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 800 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 800 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+.+|||++|+....+...+|+++|+++||.||++.++|..+|.+++...
T Consensus 79 -----------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 79 -----------------GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp -----------------CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred -----------------CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 23579999999999999999999999999999999999999999987653
No 31
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.82 E-value=9.4e-20 Score=171.67 Aligned_cols=122 Identities=28% Similarity=0.425 Sum_probs=110.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
+.+||||||++..+..++.+|++.|+. +..+.++.+|++.+.....||+||+|++||+|||++++++||+..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~------- 77 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS------- 77 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST-------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-------
Confidence 358999999999999999999999995 889999999999875445799999999999999999999999732
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+++|||++|+....+...+|+++|+++||.||++.++|..+|++.+..
T Consensus 78 -------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 78 -------------RFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp -------------TCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred -------------CCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 13579999999999999999999999999999999999999999988765
No 32
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.82 E-value=3.8e-21 Score=207.55 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=106.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 801 (871)
+.+|||||||+.++..++.+|+..||.|. +|.||.+|++.+. ...||+||||++|| +|||++++++||+.
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~-~~~~dlvl~D~~MPd~mdG~e~~~~ir~~------- 231 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT-RRTPGLVLADIQLADGSSGIDAVKDILGR------- 231 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HCCCSEEEEESCCTTSCCTTTTTHHHHHH-------
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH-hCCCCEEEEcCCCCCCCCHHHHHHHHHhc-------
Confidence 45899999999999999999999999999 9999999999995 56799999999999 89999999999973
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
. ++|||++|+.. +...+|+++||++||.|||+.++|..+|.+++...
T Consensus 232 ---------------~-~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 232 ---------------M-DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp ---------------T-TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred ---------------C-CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 1 69999999985 45777999999999999999999999999987543
No 33
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.82 E-value=8.4e-20 Score=172.48 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=100.8
Q ss_pred ecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhh
Q 002879 348 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 427 (871)
Q Consensus 348 ~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~ 427 (871)
++|.+.++.+.. .+..+++.+.+.++...+.....++..+.||+.||++||+||++.+.|.|++...+
T Consensus 2 v~l~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~-------- 69 (128)
T 3ehg_A 2 IRLKDELINIKQ----ILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLW-------- 69 (128)
T ss_dssp CCHHHHHHHHHH----HHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEET--------
T ss_pred ccHHHHHHHHHH----HHHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeC--------
Confidence 455555555554 44577898888776544444456889999999999999999998888888774321
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCC
Q 002879 428 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 507 (871)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~ 507 (871)
..+.|+|+|+|+||+++.+
T Consensus 70 ---------------------------------------------~~~~i~V~D~G~Gi~~~~~---------------- 88 (128)
T 3ehg_A 70 ---------------------------------------------KEVVITVSDDGTFKGEENS---------------- 88 (128)
T ss_dssp ---------------------------------------------TEEEEEEEESSCCCSCSSC----------------
T ss_pred ---------------------------------------------CEEEEEEEECCcCcCcccC----------------
Confidence 2478999999999998754
Q ss_pred CCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 508 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 508 ~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
+|+||||+|||++++.|||+|+++|.+ ||+|++++|+.
T Consensus 89 --~g~GlGL~~~~~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 89 --FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp --CCTTSHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred --CCCCccHHHHHHHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 589999999999999999999999998 99999999974
No 34
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.7e-19 Score=173.52 Aligned_cols=124 Identities=24% Similarity=0.492 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. .+.||+||+|++||+|||++++++||+....
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~------ 86 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLDMLKQLRVMQAS------ 86 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHHHHT------
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhc------
Confidence 468999999999999999999999999999999999999885 4679999999999999999999999974321
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
..+++|||++|+....+...+|+++|+++||.||++.++|..+|.++....
T Consensus 87 ------------~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 137 (143)
T 3m6m_D 87 ------------GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST 137 (143)
T ss_dssp ------------TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ------------cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhh
Confidence 234689999999999999999999999999999999999999999987643
No 35
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.81 E-value=2.6e-19 Score=168.88 Aligned_cols=125 Identities=22% Similarity=0.349 Sum_probs=105.3
Q ss_pred EeecHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccch
Q 002879 346 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 425 (871)
Q Consensus 346 ~~~~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~ 425 (871)
.+++|.+++++++..+ ..+++.+.+.++...+.....|+..|.||+.||++||+||++.|.|.|++...
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~------- 71 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVD------- 71 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEES-------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEc-------
Confidence 4678999999999877 66788888887766554444569999999999999999999889888876431
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCC
Q 002879 426 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 505 (871)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~ 505 (871)
.. +.|+|+|+|+||+++.
T Consensus 72 ----------------------------------------------~~-~~i~v~D~G~gi~~~~--------------- 89 (129)
T 3zxo_A 72 ----------------------------------------------DD-LCIEVTDNGRGMPDEF--------------- 89 (129)
T ss_dssp ----------------------------------------------SE-EEEEEEECCCCCTTTT---------------
T ss_pred ----------------------------------------------CC-EEEEEecCCCCCCccc---------------
Confidence 13 6899999999999764
Q ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEEeC
Q 002879 506 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 549 (871)
Q Consensus 506 ~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g-~Gs~F~~~lp~~ 549 (871)
+||||+|||++++.|||++.+.|.++ +|++|++++|+.
T Consensus 90 ------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 90 ------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp ------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred ------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 69999999999999999999999999 999999999974
No 36
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.80 E-value=2e-19 Score=180.90 Aligned_cols=117 Identities=23% Similarity=0.340 Sum_probs=109.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+.+||||||++..+..++.+|+..||.|.++.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~--------- 76 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-AEKFEFITVXLHLGNDSGLSLIAPLCDL--------- 76 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT-TSCCSEEEECSEETTEESHHHHHHHHHH---------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeccCCCccHHHHHHHHHhc---------
Confidence 468999999999999999999999999999999999999995 5779999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.+...+|+++|+++||.||++.++|..+|.+.+
T Consensus 77 -------------~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 77 -------------QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp -------------CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999987654
No 37
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.79 E-value=3.2e-18 Score=160.17 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=109.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 72 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-DVRNGVLVTDLRMPDMSGVELLRNLGDL--------- 72 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-GCCSEEEEEECCSTTSCHHHHHHHHHHT---------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 73 -------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 73 -------------KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp -------------TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999999999999987654
No 38
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.78 E-value=2.7e-18 Score=167.08 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=110.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||++||+++++.||+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~lr~~~-------- 77 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS-LTRPDLIISDVLMPEMDGYALCRWLKGQP-------- 77 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT-TCCCSEEEEESCCSSSCHHHHHHHHHHST--------
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCC--------
Confidence 468999999999999999999999999999999999999995 57899999999999999999999999732
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+.+|||++|+....+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 78 ------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 78 ------------DLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp ------------TTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ------------CcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1357999999999999999999999999999999999999999987754
No 39
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.78 E-value=2.3e-18 Score=160.50 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=109.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT-KERPDLVLLDMKIPGMDGIEILKRMKVI---------- 72 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCTTCCHHHHHHHHHHH----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHHh----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999974
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|..++++.+..
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 73 ------------DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ------------CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred ------------CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 2468999999999999999999999999999999999999999998754
No 40
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.78 E-value=1.6e-18 Score=161.21 Aligned_cols=120 Identities=30% Similarity=0.508 Sum_probs=103.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 71 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-ENKPDLILMDIQLPEISGLEVTKWLKEDD--------- 71 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHHHHST---------
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcCc---------
Confidence 48999999999999999999999999999999999999884 45799999999999999999999999731
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 72 -----------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 72 -----------DLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp -----------TTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred -----------cccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 13478999999999999999999999999999999999999999987654
No 41
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.78 E-value=2.8e-18 Score=161.31 Aligned_cols=121 Identities=30% Similarity=0.416 Sum_probs=104.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+++||||||++..+..++.+|++.|+.+.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGLKLLEHIRNR-------- 76 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT-TCCCSEEEECCC-----CHHHHHHHHHT--------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHhc--------
Confidence 3579999999999999999999999999999999999999995 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHhhhCCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPPI 866 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~-~~~~L~~~l~~~~~~~ 866 (871)
.+++|||++|+....+...+++++|+++|+.||+ +.++|...+++.+...
T Consensus 77 --------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 77 --------------GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp --------------TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 3478999999999999999999999999999999 9999999999887653
No 42
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.77 E-value=1.8e-18 Score=165.07 Aligned_cols=123 Identities=19% Similarity=0.249 Sum_probs=111.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~-~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+||||||++..+..++.+|+. .|+.|.++.++.+|++.+.....||+||+|+.|| ++||++++++||+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~------ 77 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNS------ 77 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSG------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCc------
Confidence 35899999999999999999999 9999999999999999885327899999999999 999999999999721
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
..+++|||++|+..+.+...+|+++|+++||.||++.++|..+|++++...
T Consensus 78 --------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 78 --------------RTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp --------------GGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred --------------ccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 135799999999999999999999999999999999999999999887643
No 43
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=4.7e-18 Score=159.09 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCceEEecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhh
Q 002879 349 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 428 (871)
Q Consensus 349 ~l~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~ 428 (871)
+|.+.+.+++..+ ..+++.+.+.++...+.....++..|.+|+.||++||+||++.|.|.|++...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE---------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE----------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC----------
Confidence 5677777777766 56777777777655444444468899999999999999999988887776431
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCC
Q 002879 429 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 508 (871)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~ 508 (871)
.. +.|+|+|+|+||+++.
T Consensus 68 -------------------------------------------~~-~~i~v~D~G~gi~~~~------------------ 85 (124)
T 3zxq_A 68 -------------------------------------------DD-VRVEVVDDGVGISGDI------------------ 85 (124)
T ss_dssp -------------------------------------------EE-EEEEEEECCCSSCGGG------------------
T ss_pred -------------------------------------------CC-EEEEEEECCCCCCccc------------------
Confidence 13 6799999999999875
Q ss_pred CCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 002879 509 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 549 (871)
Q Consensus 509 ~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F~~~lp~~ 549 (871)
+||||+|||++++.|||++.+.|.+++|++|++++|+.
T Consensus 86 ---~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 86 ---TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp ---SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred ---cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 39999999999999999999999999999999999974
No 44
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.77 E-value=3.9e-18 Score=161.16 Aligned_cols=116 Identities=21% Similarity=0.318 Sum_probs=107.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE-NEFFNLALFXIKLPDMEGTELLEKAHKL---------- 72 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSBCSSSBHHHHHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 73 ------------RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp ------------CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998754
No 45
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.77 E-value=4e-18 Score=157.78 Aligned_cols=116 Identities=26% Similarity=0.389 Sum_probs=106.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++..+..++..|+..|+. +..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l~~~--------- 72 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEIMKI--------- 72 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEECSCGGGCHHHHHHHHHHH---------
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhh---------
Confidence 58999999999999999999999999 568999999999885 4679999999999999999999999974
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|...+++.+
T Consensus 73 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 73 -------------DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp -------------CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 24689999999999999999999999999999999999999998764
No 46
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.77 E-value=4.2e-18 Score=161.47 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=110.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|++.|+.|..+.++.+|+..+.....||+||+|+.||+++|++++++||+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~-------- 78 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE-------- 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST--------
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC--------
Confidence 368999999999999999999999999999999999999885444499999999999999999999999731
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++....
T Consensus 79 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 79 -------------RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp -------------TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred -------------CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 34689999999999999999999999999999999999999999987654
No 47
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.77 E-value=1.7e-18 Score=162.16 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=107.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~~--------- 73 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS-TRGYDAVFIDLNLPDTSGLALVKQLRALP--------- 73 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHHHHSC---------
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhh---------
Confidence 58999999999999999999999999999999999999985 46799999999999999999999999742
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 867 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~~ 867 (871)
..+++|||++|+....+. .+++..|+++||.||++.++|.+.++++.....
T Consensus 74 -----------~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 74 -----------MEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp -----------CSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred -----------ccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 145799999999998888 899999999999999999999999999877543
No 48
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.76 E-value=6.4e-18 Score=156.47 Aligned_cols=115 Identities=28% Similarity=0.433 Sum_probs=106.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..++..|+..|+.|..+.++.+|++.+. .+.||+||+|+.||++||++++++||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l~~~----------- 69 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-EHIPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHHT-----------
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999885 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|...+++.+
T Consensus 70 -----------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp -----------TCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -----------CCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998764
No 49
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.76 E-value=1.5e-18 Score=164.97 Aligned_cols=117 Identities=15% Similarity=0.287 Sum_probs=109.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..++.+|++.||.|.++.++.+|++.+. ...||+||+|+.||+ ++|++++++||+.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~-------- 77 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-SDDAIGMIIEAHLEDKKDSGIELLETLVKR-------- 77 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC-CTTEEEEEEETTGGGBTTHHHHHHHHHHHT--------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEeCcCCCCCccHHHHHHHHHhC--------
Confidence 58999999999999999999999999999999999999885 577999999999999 9999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+....+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 78 --------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 78 --------------GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp --------------TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999999999999999999999999988654
No 50
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.76 E-value=1e-17 Score=156.89 Aligned_cols=118 Identities=31% Similarity=0.456 Sum_probs=107.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++..+..++.+|+..|+ .+..+.++.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~l~~~l~~~~-------- 75 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDGLELLKTIRAXX-------- 75 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-TCCCCEEEEESCCSSSCHHHHHHHHHC----------
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhc--------
Confidence 4799999999999999999999999 7999999999999985 46799999999999999999999999632
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+
T Consensus 76 ------------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 76 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp ------------CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 134789999999999999999999999999999999999999998764
No 51
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.76 E-value=7e-18 Score=163.41 Aligned_cols=118 Identities=19% Similarity=0.451 Sum_probs=107.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC--EEEEEcCHHHHHHHhC--------CCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLM--------PPHQFDACFMDIQMPEMDGFEATKIIREM 794 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eAl~~l~--------~~~~~DlilmDi~MP~mdG~e~~~~IR~~ 794 (871)
.+||||||++..+..++.+|++.|+ .|.++.++.+|++.+. ....||+||+|+.||+++|++++++||+.
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 5899999999999999999999998 8999999999999883 24679999999999999999999999973
Q ss_pred hccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 795 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 795 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
. ..+++|||++|+....+...+|+++|+++||.||++.++|..+|+++
T Consensus 85 ~--------------------~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 85 P--------------------HTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp T--------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred c--------------------cccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 1 24578999999999999999999999999999999999999888764
No 52
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.76 E-value=8.7e-18 Score=155.94 Aligned_cols=115 Identities=26% Similarity=0.401 Sum_probs=106.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+. .+.||+||+|+.||+++|+++++.||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~~~~~l~~----------- 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDENGLMLTRALRE----------- 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHT-----------
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh-cCCCCEEEEeCCCCCCChHHHHHHHHh-----------
Confidence 48999999999999999999999999999999999999884 467999999999999999999999996
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|...|++.+
T Consensus 71 ------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 71 ------------RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp ------------TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 13589999999999999999999999999999999999999998764
No 53
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.76 E-value=1.4e-17 Score=160.99 Aligned_cols=117 Identities=18% Similarity=0.322 Sum_probs=105.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC--EEEEEcCHHHHHHHhCC------CCCccEEEEeCCCCCCCHHHHHHHHHhhhc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP------PHQFDACFMDIQMPEMDGFEATKIIREMEH 796 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eAl~~l~~------~~~~DlilmDi~MP~mdG~e~~~~IR~~~~ 796 (871)
.+||||||++..+..++.+|+..|+ .|..+.+|.+|++.+.. ...||+||+|+.||+|||++++++||+..
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~- 87 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP- 87 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT-
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc-
Confidence 4899999999999999999999887 89999999999999853 14799999999999999999999999731
Q ss_pred cccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh
Q 002879 797 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 861 (871)
Q Consensus 797 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~ 861 (871)
..+++|||++|+....+...+++++|+++||.||++.++|..+|++
T Consensus 88 -------------------~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~ 133 (149)
T 1i3c_A 88 -------------------DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQG 133 (149)
T ss_dssp -------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred -------------------CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHH
Confidence 1247899999999999999999999999999999999999988875
No 54
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.76 E-value=1.2e-18 Score=165.31 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=109.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC-CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g-~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
..+||||||++..+..++.+|++.| |.|.++.++.+|++.+. .+.||+||+|+.||+++|++++++||+..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~------- 85 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-DTRPGIVILDLGGGDLLGKPGIVEARALW------- 85 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-TCCCSEEEEEEETTGGGGSTTHHHHHGGG-------
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-ccCCCEEEEeCCCCCchHHHHHHHHHhhC-------
Confidence 3589999999999999999999999 99999999999999884 57899999999999999999999999742
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
+++|||++|+....+...+|+++|+++|+.||++.++|..+|.+++..
T Consensus 86 ---------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 86 ---------------ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ---------------TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999999999999999999999999998764
No 55
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.76 E-value=7.2e-18 Score=161.45 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=111.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEEEEcCHHHHHHHhCC----CCCccEEEEeCCCCCCCHHHHHHHHHhhhcc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP----PHQFDACFMDIQMPEMDGFEATKIIREMEHN 797 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eAl~~l~~----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~ 797 (871)
..+||||||++..+..++.+|+..|+ .|.++.++.+|++.+.. ...||+||+|+.||++||++++++||+....
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 35899999999999999999999999 99999999999998842 1679999999999999999999999974210
Q ss_pred ccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHhhhCCCCCC
Q 002879 798 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFFPPIPD 868 (871)
Q Consensus 798 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G-~d~yl~KP~~~~~L~~~l~~~~~~~~~ 868 (871)
..+++|||++|+....+...+++++| +++||.||++.++|..+|++++.....
T Consensus 89 ------------------~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~~ 142 (146)
T 3ilh_A 89 ------------------MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGHH 142 (146)
T ss_dssp ------------------GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC---
T ss_pred ------------------ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhccC
Confidence 13578999999999999999999999 999999999999999999998876443
No 56
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.75 E-value=7.3e-18 Score=155.69 Aligned_cols=116 Identities=34% Similarity=0.491 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++..+..++..|...|+.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-AEQPDIIILDLMLPEIDGLEVAKTIRKT---------- 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHH----------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHhC----------
Confidence 37999999999999999999999999999999999999885 4679999999999999999999999962
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
+++|||++|+........+++++|+++|+.||++.++|...+++.+.
T Consensus 71 -------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 71 -------------SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp -------------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -------------CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 25899999999999999999999999999999999999999987653
No 57
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.75 E-value=1.9e-17 Score=157.09 Aligned_cols=124 Identities=23% Similarity=0.429 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ... |+||+|+.||++||++++++||+..+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~-dlvllD~~lp~~~g~~~~~~l~~~~~~----- 78 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEH-KVVFMDVCMPGVENYQIALRIHEKFTK----- 78 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTC-SEEEEECCSSTTTTTHHHHHHHHHHC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-ccC-CEEEEeCCCCCCcHHHHHHHHHHhhhh-----
Confidence 4579999999999999999999999999999999999999885 344 999999999999999999999853210
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
......|||++|+....+...+|+++|+++||.||++.++|..+|++.+..
T Consensus 79 ------------~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 79 ------------QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp ------------CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred ------------ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 001224688999999999999999999999999999999999999987654
No 58
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.75 E-value=9.9e-18 Score=162.67 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=109.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 83 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-SREVDLVISAAHLPQMDGPTLLARIHQQ--------- 83 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH-cCCCCEEEEeCCCCcCcHHHHHHHHHhH---------
Confidence 468999999999999999999999999999999999999985 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G-~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+....+...+++++| +++||.||++.++|..+|.+.+
T Consensus 84 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 84 -------------YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp -------------CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred -------------CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999 9999999999999999998764
No 59
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.75 E-value=2.2e-18 Score=165.69 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=110.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC-CEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g-~~v~~a~~g~eAl~~l~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
+.+||||||++..+..++.+|+..| +.|..+.++.+|+..+... ..||+||+|+.||+++|++++++||+.
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~------- 92 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRL------- 92 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHH-------
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHh-------
Confidence 4699999999999999999999999 9999999999998876433 679999999999999999999999974
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+.+|||++|+....+...+|+++|+++||.||++.++|..+|.+.+...
T Consensus 93 ---------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 93 ---------------HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp ---------------CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ---------------CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 34689999999999999999999999999999999999999999887653
No 60
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.75 E-value=1.1e-17 Score=155.52 Aligned_cols=115 Identities=23% Similarity=0.364 Sum_probs=106.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~---------- 72 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGKNGLLLARELREQ---------- 72 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHHHHH----------
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhC----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
+++|||++|+........+++++|+++|+.||++.++|...+++.+
T Consensus 73 -------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp -------------CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 2589999999999999999999999999999999999999988754
No 61
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.75 E-value=2.1e-18 Score=192.66 Aligned_cols=116 Identities=21% Similarity=0.321 Sum_probs=108.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++.++..++.+|++.||.|..+.||.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllDi~mP~~dG~ell~~lr~~---------- 69 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK-ELFFPVIVLDVWMPDGDGVNFIDFIKEN---------- 69 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HBCCSEEEEESEETTEETTTHHHHHHHH----------
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999985 5679999999999999999999999974
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|++.+.+...+|+++|++|||.||++.++|..+|.+.+
T Consensus 70 ------------~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l 116 (368)
T 3dzd_A 70 ------------SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAF 116 (368)
T ss_dssp ------------CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998765
No 62
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.75 E-value=7.2e-18 Score=178.07 Aligned_cols=117 Identities=28% Similarity=0.412 Sum_probs=108.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..|+.|.++.++.+|++.+. ...||+||+|++||+|||++++++||+.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~lr~~--------- 92 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR-ETRPDAVILDVXMPGMDGFGVLRRLRAD--------- 92 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHT---------
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 468999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.+...+|+++|++|||.||++.++|..+|++.+
T Consensus 93 -------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~ 139 (250)
T 3r0j_A 93 -------------GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 139 (250)
T ss_dssp -------------TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998765
No 63
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.75 E-value=1.1e-17 Score=158.42 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g--~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..++.+|+..| +.+..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~-~~~~dlvilD~~lp~~~g~~~~~~l~~~-------- 74 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE-EYNPNVVILDIEMPGMTGLEVLAEIRKK-------- 74 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHT--------
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHHHHH--------
Confidence 379999999999999999999887 56788999999999884 4579999999999999999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+....+...+++++|+++||.||++.++|..+|++.+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 75 --------------HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp --------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 3478999999999999999999999999999999999999999886543
No 64
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.75 E-value=7.9e-18 Score=157.88 Aligned_cols=118 Identities=21% Similarity=0.386 Sum_probs=107.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++..+..++.+|+..|+ .+..+.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~-------- 77 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA-QNPHHLVISDFNMPKMDGLGLLQAVRANP-------- 77 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH-TSCCSEEEECSSSCSSCHHHHHHHHTTCT--------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH-cCCCCEEEEeCCCCCCCHHHHHHHHhcCc--------
Confidence 5899999999999999999999999 8999999999999885 46799999999999999999999999631
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 78 ------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (129)
T 1p6q_A 78 ------------ATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp ------------TSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred ------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 134789999999999999999999999999999999999999998764
No 65
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.75 E-value=1.4e-17 Score=162.59 Aligned_cols=118 Identities=23% Similarity=0.391 Sum_probs=109.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCC--CccEEEEeCCCCCCCHHHHHHHHHhhhccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPH--QFDACFMDIQMPEMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~--~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 800 (871)
..+||||||++..+..++.+|++.|+.+. ++.++.+|++.+. .. .||+||+|+.||+++|++++++||+.
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~-~~~~~~dliilD~~l~~~~g~~~~~~lr~~------ 108 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYK-NHYPNIDIVTLXITMPKMDGITCLSNIMEF------ 108 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHGGGCCEEEECSSCSSSCHHHHHHHHHHH------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-hcCCCCCEEEEeccCCCccHHHHHHHHHhh------
Confidence 35899999999999999999999999998 9999999999885 35 69999999999999999999999974
Q ss_pred cccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+.+|||++|+..+.+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 109 ----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 109 ----------------DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp ----------------CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred ----------------CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 246899999999999999999999999999999999999999998865
No 66
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.75 E-value=3.8e-18 Score=162.99 Aligned_cols=117 Identities=30% Similarity=0.375 Sum_probs=107.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 802 (871)
+.+||||||++..+..++.+|++.|+.|.++.++.+|++.+.....||+||+|+.||+ ++|+++++.||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-------- 76 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-------- 76 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH--------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC--------
Confidence 4689999999999999999999999999999999999999854367999999999995 9999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+.+
T Consensus 77 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 77 ---------------SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp ---------------CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ---------------CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 3689999999999888999999999999999999999999998754
No 67
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.74 E-value=1.7e-17 Score=160.41 Aligned_cols=119 Identities=21% Similarity=0.347 Sum_probs=110.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g--~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..++.+|+..| +.|.++.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~-------- 91 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE-KESVDIAILDVEMPVKTGLEVLEWIRSE-------- 91 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT-TSCCSEEEECSSCSSSCHHHHHHHHHHT--------
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh-ccCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 589999999999999999999987 78999999999999995 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+++|||++|+..+.+...+|+++|+++||.||++.++|..+|.+.+...
T Consensus 92 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 92 --------------KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp --------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred --------------CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 34789999999999999999999999999999999999999999987654
No 68
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.74 E-value=9.5e-18 Score=158.86 Aligned_cols=118 Identities=28% Similarity=0.454 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++..+..+...|...|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-TEKPDLIVLDVMLPKLDGIEVCKQLRQQ---------- 72 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHT----------
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHHHcC----------
Confidence 58999999999999999999999999999999999999884 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+.+|||++|+........+++++|+++|+.||++.++|...|++.+..
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 73 ------------KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp ------------TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 2468999999999988899999999999999999999999999876543
No 69
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.74 E-value=5.6e-18 Score=160.02 Aligned_cols=119 Identities=16% Similarity=0.284 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++..+..++.+|++.|+.+. ++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~l~~~~g~~~~~~l~~~--------- 71 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKR--------- 71 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHHHHT---------
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH-hcCCCEEEEecCCCCCChHHHHHHHHhc---------
Confidence 3799999999999999999999999998 8999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+++|||++|+..+.+...+++++|+++|+.||++.++|..+|++.+...
T Consensus 72 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 72 -------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp -------------TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred -------------CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 34789999999999999999999999999999999999999999876543
No 70
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.74 E-value=1.1e-17 Score=159.10 Aligned_cols=115 Identities=28% Similarity=0.412 Sum_probs=106.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~l~~~l~~~---------- 73 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF-SNKYDLIFLEIILSDGDGWTLCKKIRNV---------- 73 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HCCCSEEEEESEETTEEHHHHHHHHHTT----------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHccC----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999962
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 74 -------------~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 119 (136)
T 2qzj_A 74 -------------TTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAIL 119 (136)
T ss_dssp -------------CCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 1589999999999999999999999999999999999999988654
No 71
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=8.9e-18 Score=159.99 Aligned_cols=116 Identities=18% Similarity=0.323 Sum_probs=107.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvllD~~l~~~~g~~l~~~l~~~---------- 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE-RSKPQLIILDLKLPDMSGEDVLDWINQN---------- 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH-HHCCSEEEECSBCSSSBHHHHHHHHHHT----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhc----------
Confidence 38999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+....+...+++++|+++||.||++.++|..+|++.+
T Consensus 74 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 120 (137)
T 3cfy_A 74 ------------DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHL 120 (137)
T ss_dssp ------------TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999997654
No 72
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.74 E-value=3.1e-17 Score=155.50 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=108.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEEEEcCHHHHHHHhCCC------CCccEEEEeCCCCCCCHHHHHHHHHhhh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP------HQFDACFMDIQMPEMDGFEATKIIREME 795 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eAl~~l~~~------~~~DlilmDi~MP~mdG~e~~~~IR~~~ 795 (871)
+++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ..||+||+|+.||+++|++++++||+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 999999999999998641 6799999999999999999999999732
Q ss_pred ccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 796 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 796 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+++|||++|+....+...+++++|+++|+.||++.++|...|++++
T Consensus 82 --------------------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 82 --------------------TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp --------------------TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred --------------------ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999999887654
No 73
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.74 E-value=5.3e-18 Score=161.58 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~-------- 76 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-RRPYAAMTVDLNLPDQDGVSLIRALRRDS-------- 76 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHTSG--------
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCc--------
Confidence 368999999999999999999999999999999999999985 56799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHH-HHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYE-ECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~-~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+++|||++|+....+... +++++|+++|+.||++.++|..+|.+.+.
T Consensus 77 ------------~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 77 ------------RTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp ------------GGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 13579999999988887777 89999999999999999999999987653
No 74
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.74 E-value=2e-17 Score=158.55 Aligned_cols=119 Identities=25% Similarity=0.483 Sum_probs=108.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+||||||++..+..++.+|+..|+. |.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~lr~~~------ 77 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ-QAKYDLIILDIGLPIANGFEVMSAVRKPG------ 77 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT-TCCCSEEEECTTCGGGCHHHHHHHHHSSS------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcc------
Confidence 358999999999999999999999987 889999999999995 57799999999999999999999999731
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHhhhC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFF 863 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~-~~~~L~~~l~~~~ 863 (871)
..+.+|||++|+..+.+...+|+++|+++||.||+ +.++|..+|++.+
T Consensus 78 --------------~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 78 --------------ANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp --------------TTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred --------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 24579999999999999999999999999999999 9999998887643
No 75
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.74 E-value=3.6e-17 Score=156.37 Aligned_cols=117 Identities=20% Similarity=0.343 Sum_probs=108.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~-~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++..+..++.+|+..|+.|.++.++.+|++.+.. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 74 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI--------- 74 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh---------
Confidence 589999999999999999999999999999999999998842 4679999999999999999999999974
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.+...+|+++|+++||.||++.++|..+|.+.+
T Consensus 75 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 75 -------------TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp -------------CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998654
No 76
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.74 E-value=1.5e-17 Score=157.85 Aligned_cols=118 Identities=21% Similarity=0.291 Sum_probs=109.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 76 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG-LHAPDVIITDIRMPKLGGLEMLDRIKAG--------- 76 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHT---------
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999985 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+++.
T Consensus 77 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 77 -------------GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp -------------TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred -------------CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999998753
No 77
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.73 E-value=2.1e-17 Score=157.38 Aligned_cols=119 Identities=27% Similarity=0.396 Sum_probs=105.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 73 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-ATPPDLVLLDIMMEPMDGWETLERIKTDP--------- 73 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHST---------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHcCc---------
Confidence 48999999999999999999999999999999999999885 46799999999999999999999999731
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+++|||++|+.........+..+|+++||.||++.++|..+|.+.+.
T Consensus 74 -----------~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 74 -----------ATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp -----------TTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred -----------ccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHH
Confidence 1347899999998776666667777889999999999999999988654
No 78
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.73 E-value=3.2e-17 Score=154.36 Aligned_cols=121 Identities=22% Similarity=0.348 Sum_probs=104.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 76 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS-TFEPAIMTLDLSMPKLDGLDVIRSLRQNK-------- 76 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HTCCSEEEEESCBTTBCHHHHHHHHHTTT--------
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhcC--------
Confidence 468999999999999999999999999999999999999885 56799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
....+|||++|+.... ...+++++|+++||.||++.++|..+|++.....
T Consensus 77 ------------~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 77 ------------VANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp ------------CSSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred ------------ccCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 1134667777766555 7889999999999999999999999999887653
No 79
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.73 E-value=1.8e-17 Score=169.43 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=108.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~--------- 73 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-PEQHGCLVLDMRMPGMSGIELQEQLTAI--------- 73 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-TTSCEEEEEESCCSSSCHHHHHHHHHHT---------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-ccCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999885 5679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.+...+++++|++||+.||++.++|..+|.+.+
T Consensus 74 -------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 120 (208)
T 1yio_A 74 -------------SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGL 120 (208)
T ss_dssp -------------TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999987654
No 80
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.73 E-value=1.7e-17 Score=152.58 Aligned_cols=114 Identities=25% Similarity=0.413 Sum_probs=103.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-SGNYDLVILDIEMPGISGLEVAGEIRKK---------- 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcc----------
Confidence 37999999999999999999999999999999999999885 4679999999999999999999999974
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..... .+++++|+++|+.||++.++|..++++.+
T Consensus 71 ------------~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 71 ------------KKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ------------CTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ------------CCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 2468999999876654 67889999999999999999999998764
No 81
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.73 E-value=2e-17 Score=156.04 Aligned_cols=117 Identities=18% Similarity=0.253 Sum_probs=102.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+ .|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--------- 73 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL-AHPPDVLISDVNMDGMDGYALCGHFRSEP--------- 73 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHHHHST---------
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhCC---------
Confidence 589999999999999999999 8999999999999999985 46799999999999999999999999732
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+++|||++|+....+. .+++++|+++|+.||++.++|..+|++.+.
T Consensus 74 -----------~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 74 -----------TLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp -----------TTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -----------ccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHh
Confidence 135799999999988777 899999999999999999999999988764
No 82
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=2.7e-17 Score=159.22 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=108.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccc
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 800 (871)
.+.+||||||++..+..++.+|++.|+. +.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~------ 86 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK-AHLPDVALLDYRMPGMDGAQVAAAVRSY------ 86 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHHHHT------
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc------
Confidence 4569999999999999999999999954 558999999999885 4679999999999999999999999973
Q ss_pred cccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+.+|||++|+..+.+...+|+++|+++|+.||++.++|..+|.+.+..
T Consensus 87 ----------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 87 ----------------ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp ----------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ----------------CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 3468999999999999999999999999999999999999999887654
No 83
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.73 E-value=1.1e-17 Score=156.40 Aligned_cols=119 Identities=22% Similarity=0.297 Sum_probs=108.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLAWMLPGGSGIQFIKHLRRES--------- 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS-SSCCSEEEEESEETTEEHHHHHHHHHTST---------
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHhCc---------
Confidence 48999999999999999999999999999999999999885 56799999999999999999999999631
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+++|||++|+....+...+++++|+++|+.||++.++|...|++.+.
T Consensus 73 -----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp -----------TTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred -----------ccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 1257899999999998999999999999999999999999999987654
No 84
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.72 E-value=2.5e-17 Score=152.34 Aligned_cols=114 Identities=24% Similarity=0.359 Sum_probs=105.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..++..|+..|+.+..+.++.+|+..+. ...||+||+|+.||+++|++++++||+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~------------ 69 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQ------------ 69 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESEETTEEHHHHHHHHHT------------
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHh------------
Confidence 7999999999999999999999999999999999998874 457999999999999999999999984
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|...+++.+
T Consensus 70 -----------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 70 -----------WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp -----------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 23589999999999999999999999999999999999999998764
No 85
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.72 E-value=4.4e-17 Score=155.61 Aligned_cols=118 Identities=19% Similarity=0.355 Sum_probs=109.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+ ||+++|+++++.||+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~-~~~~~g~~~~~~l~~~--------- 72 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR-REKIDLVFVDV-FEGEESLNLIRRIREE--------- 72 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT-TSCCSEEEEEC-TTTHHHHHHHHHHHHH---------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-ccCCCEEEEeC-CCCCcHHHHHHHHHHH---------
Confidence 358999999999999999999999999999999999999995 46799999999 9999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 73 -------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 73 -------------FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp -------------CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 2468999999999999999999999999999999999999999887643
No 86
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.72 E-value=2e-17 Score=155.61 Aligned_cols=119 Identities=21% Similarity=0.334 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..++.+|... |+.+. .+.++.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~~------- 74 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE-EKRPDILLLDIIMPHLDGLAVLERIRAGF------- 74 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHHC-------
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHhcC-------
Confidence 37999999999999999999987 88875 7999999999884 45799999999999999999999999721
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 75 --------------EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp --------------SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 2357999999999999999999999999999999999999999887643
No 87
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.72 E-value=2.4e-17 Score=174.21 Aligned_cols=118 Identities=23% Similarity=0.353 Sum_probs=109.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..|+.|.++.++.+|++.+. ...||+||+|+.||+|||++++++||+
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlvllD~~lp~~~G~~l~~~lr~---------- 105 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR-EDHPDLILLDLGLPDFDGGDVVQRLRK---------- 105 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEEECCSCHHHHHHHHHHHHT----------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHc----------
Confidence 468999999999999999999999999999999999999885 467999999999999999999999996
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+.+|||++|+..+.+...+|+++|++|||.||++.++|..+|.+.+..
T Consensus 106 -------------~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 106 -------------NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp -------------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 2368999999999999999999999999999999999999999987654
No 88
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.72 E-value=4.9e-17 Score=157.37 Aligned_cols=117 Identities=22% Similarity=0.325 Sum_probs=106.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..+..+|+. |+.|.++.++.+|++.+....+||+||+|+.||+++|++++++||+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 73 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLI--------- 73 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhc---------
Confidence 36899999999999999999986 99999999999999998544457999999999999999999999974
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G-~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+|||++|+..+.+...+++++| +++||.||++.++|..+|.+.+
T Consensus 74 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 74 -------------SPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp -------------CSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999 9999999999999999998654
No 89
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.72 E-value=6.8e-17 Score=154.03 Aligned_cols=121 Identities=20% Similarity=0.299 Sum_probs=109.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH-cCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKR-YGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~-~g~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+||||||++..+..++.+|+. .|+. |..+.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~------ 80 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-TVKPDVVMLDLMMVGMDGFSICHRIKSTP------ 80 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-HTCCSEEEEETTCTTSCHHHHHHHHHTST------
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-hcCCCEEEEecccCCCcHHHHHHHHHhCc------
Confidence 46899999999999999999999 9999 999999999999885 46799999999999999999999999721
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 81 --------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 81 --------------ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp --------------TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred --------------cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 24579999999999999999999999999999999999999999887643
No 90
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.72 E-value=5.9e-17 Score=155.46 Aligned_cols=120 Identities=23% Similarity=0.424 Sum_probs=107.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEEEEcCHHHHHHHhCCC---------CCccEEEEeCCCCCCCHHHHHHHHH
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP---------HQFDACFMDIQMPEMDGFEATKIIR 792 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eAl~~l~~~---------~~~DlilmDi~MP~mdG~e~~~~IR 792 (871)
+.+||||||++..+..++.+|++.|+ .|..+.++.+|++.+... ..||+||+|+.||+++|++++++||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 46899999999999999999999998 899999999999998531 6799999999999999999999999
Q ss_pred hhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 793 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 793 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
+.. ..+++|||++|+....+...+++++|+++|+.||++.++|...|.+++
T Consensus 86 ~~~--------------------~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 86 QDE--------------------VLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp TST--------------------TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred hCc--------------------ccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 732 124689999999999999999999999999999999999998887653
No 91
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.71 E-value=1.5e-16 Score=154.35 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=108.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-GTSVQLVISDMRMPEMGGEVFLEQVAKS-------- 76 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT-TSCCSEEEEESSCSSSCHHHHHHHHHHH--------
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHHh--------
Confidence 3568999999999999999999999999999999999999995 4679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHhhhC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G-~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+|||++|+....+...+++++| +++||.||++.++|...|.+.+
T Consensus 77 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 77 --------------YPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp --------------CTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 2468999999999999999999998 9999999999999999987654
No 92
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.71 E-value=5.7e-17 Score=166.75 Aligned_cols=117 Identities=23% Similarity=0.344 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g-~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..++.+|+..| +.+ ..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~lr~~-------- 76 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREK-------- 76 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEEETTSTTSCHHHHHHHHHHS--------
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 489999999999999999999874 887 68999999999885 4679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+....+...+|+++|++|||.||++.++|..+|.+.+.
T Consensus 77 --------------~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 77 --------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp --------------CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred --------------CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999999999987654
No 93
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.71 E-value=4.2e-17 Score=153.83 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=107.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..++.|.++.++.+|++.+. .. ||+||+|+.||+++|++++++||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~-~dlvi~D~~l~~~~g~~~~~~l~~~--------- 71 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-NK-QDIIILDLMMPDMDGIEVIRHLAEH--------- 71 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-CT-TEEEEEECCTTTTHHHHHHHHHHHT---------
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-cC-CCEEEEeCCCCCCCHHHHHHHHHhC---------
Confidence 358999999999999999999999999999999999999875 45 9999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQ-----ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 867 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~-----~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~~ 867 (871)
.+.+|||++|+.... +...+++++|+++||.||++.++|..+|++.+....
T Consensus 72 -------------~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 72 -------------KSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp -------------TCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred -------------CCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 346899999998875 677779999999999999999999999999887543
No 94
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.71 E-value=4.4e-17 Score=155.99 Aligned_cols=116 Identities=20% Similarity=0.332 Sum_probs=98.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHH--cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKR--YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~--~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
.+||||||++..+..++..|.. .|+.+. .+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~l~~~l~~~------- 74 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-KHPPNVLLTDVRMPRMDGIELVDNILKL------- 74 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-TSCCSEEEEESCCSSSCHHHHHHHHHHH-------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh-------
Confidence 4899999999999999999973 688777 8999999999985 4679999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+|||++|+....+...+++++|+++||.||++.++|..+|++.+
T Consensus 75 ---------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 121 (141)
T 3cu5_A 75 ---------------YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSI 121 (141)
T ss_dssp ---------------CTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHH
T ss_pred ---------------CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHH
Confidence 24689999999998888899999999999999999999999887654
No 95
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.71 E-value=2.3e-17 Score=190.34 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=96.9
Q ss_pred eEEec-HHHHHHHHHHHHHHhhccCCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 002879 383 TLIGD-PGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 457 (871)
Q Consensus 383 ~v~~D-~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (871)
.+.+| +.+|.|||.|||+||+||+..| .|.|++.....
T Consensus 23 ~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~------------------------------------- 65 (530)
T 2zbk_B 23 AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD------------------------------------- 65 (530)
T ss_dssp GTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET-------------------------------------
T ss_pred eEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC-------------------------------------
Confidence 34444 5999999999999999999775 46666543210
Q ss_pred CCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCC-CCCCcccccHHHHHHHHHHcCCE-EEEEEe
Q 002879 458 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSI 535 (871)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~-~~~~GtGLGLsI~k~lv~~~gG~-I~v~S~ 535 (871)
+...+.|+|+|||+||+++.++++|+||++.+.... +..+|+||||+||+.++++|||+ |++.|.
T Consensus 66 -------------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~ 132 (530)
T 2zbk_B 66 -------------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS 132 (530)
T ss_dssp -------------TTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEE
T ss_pred -------------cCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEe
Confidence 112478999999999999999999999988765433 45689999999999999999999 999999
Q ss_pred CCCeE-EEEEEEEeCC
Q 002879 536 PNIGS-TFTFTAVFGN 550 (871)
Q Consensus 536 ~g~Gs-~F~~~lp~~~ 550 (871)
++.|+ +|+|++|+..
T Consensus 133 ~~~g~~~~~~~Lpl~~ 148 (530)
T 2zbk_B 133 PVNSKRIYTFKLKIDI 148 (530)
T ss_dssp CTTCSEEEEEEEEEET
T ss_pred cCCCeEEEEEEEEecc
Confidence 99987 9999998864
No 96
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.70 E-value=1.7e-16 Score=154.18 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=107.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+.+||||||++..+..++.+|...|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dliild~~l~~~~g~~~~~~l~~~--------- 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-ADFAGIVISDIRMPGMDGLALFRKILAL--------- 72 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-TTCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh---------
Confidence 358999999999999999999999999999999999999885 5679999999999999999999999974
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 73 -------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 73 -------------DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp -------------CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998754
No 97
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.70 E-value=5.7e-17 Score=155.77 Aligned_cols=119 Identities=16% Similarity=0.318 Sum_probs=108.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+..
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 78 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-KTHPHLIITEANMPKISGMDLFNSLKKNP-------- 78 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHTST--------
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH-cCCCCEEEEcCCCCCCCHHHHHHHHHcCc--------
Confidence 458999999999999999999999999999999999999885 45799999999999999999999999721
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 79 ------------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 79 ------------QTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVL 126 (147)
T ss_dssp ------------TTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 145799999999999999999999999999999999999999998754
No 98
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.70 E-value=2.3e-17 Score=186.29 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=103.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++.++..++.+|++.|+.|.++.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~lr~~---------- 74 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE-SEQPDLVICDLRMPQIDGLELIRRIRQT---------- 74 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH-HSCCSEEEECCCSSSSCTHHHHHHHHHT----------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHHhh----------
Confidence 48999999999999999999999999999999999999985 5679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~-~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.+...+|+++|++|||.||+ +.+.|..+|.+.+
T Consensus 75 ------------~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 75 ------------ASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp ------------TCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999 6888888777653
No 99
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.70 E-value=1.5e-15 Score=174.81 Aligned_cols=257 Identities=19% Similarity=0.200 Sum_probs=181.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.++|+||+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+ ...++..++........
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~---G~~~~~~l~~~~~~~~~ 76 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMD---GFTVCRKLKDDPTTRHI 76 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHhcCcccCCC
Confidence 4799999999999999999999999999999999999887653 478899887664432 23455666654322233
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCCC---------CCCCCCCCCCcchhhhcCCCCeE
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN---------KGNIRNWELPSMSLRHLLLGRKI 727 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~I 727 (871)
.+++++........... -..|...++.||+....+...+...+.... ...................+.+|
T Consensus 77 pii~lt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (459)
T 1w25_A 77 PVVLITALDGRGDRIQG-LESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRV 155 (459)
T ss_dssp CEEEEECSSCHHHHHHH-HHHTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTTTCCCCCCSSCSCEE
T ss_pred CEEEEECCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhhHhhhhcccccchhhhhhhhhhhcCCCCeE
Confidence 34444332222111111 112566899999999998887766542100 00000000000000111234689
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccccc
Q 002879 728 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 807 (871)
Q Consensus 728 LvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 807 (871)
|+|||+..++..+...|.. .+.+....++.++... ....||+|+||++||+|||+++++.||...
T Consensus 156 livdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~--~~~~~dlil~D~~mp~~dG~~~~~~ir~~~------------ 220 (459)
T 1w25_A 156 LIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS--AGGPVDLVIVNAAAKNFDGLRFTAALRSEE------------ 220 (459)
T ss_dssp EEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH--HHSSCSEEEEETTCSSSCHHHHHHHHHTSG------------
T ss_pred EEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh--ccCCCCEEEEecCCCCCcHHHHHHHHHhCc------------
Confidence 9999999999998888865 4677788888888643 235699999999999999999999999742
Q ss_pred chhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 808 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 808 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
...++||+++|+....+...+|+++||+||+.||++.+++...+..+
T Consensus 221 --------~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~ 267 (459)
T 1w25_A 221 --------RTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQ 267 (459)
T ss_dssp --------GGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred --------cccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHH
Confidence 13478999999999999999999999999999999999887766543
No 100
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.70 E-value=1.5e-16 Score=154.25 Aligned_cols=120 Identities=26% Similarity=0.322 Sum_probs=110.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~-~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+||||||++..+..++.+|++ .|+.+. .+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~------- 76 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR-ETTPDIVVMDLTLPGPGGIEATRHIRQW------- 76 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH-TTCCSEEEECSCCSSSCHHHHHHHHHHH-------
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHHh-------
Confidence 35899999999999999999998 799988 8999999999885 4679999999999999999999999974
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+...
T Consensus 77 ---------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 77 ---------------DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp ---------------CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred ---------------CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 24689999999999999999999999999999999999999999887654
No 101
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.70 E-value=5.4e-17 Score=165.72 Aligned_cols=115 Identities=29% Similarity=0.389 Sum_probs=105.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++..+..++.+|...||.|. .+.+|.+|++.+. .+.||+||+|+.||+|||+++++.||+.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~-~~~~dlvi~D~~~p~~~g~~~~~~l~~~--------- 83 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-LHKPDLVIMDVKMPRRDGIDAASEIASK--------- 83 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHT---------
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCChHHHHHHHHhc---------
Confidence 5899999999999999999999999998 8999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
...|||++|+..+.+...+++++|+++||.||++.++|..+|.+.+
T Consensus 84 --------------~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 129 (205)
T 1s8n_A 84 --------------RIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAV 129 (205)
T ss_dssp --------------TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHH
T ss_pred --------------CCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 1349999999999999999999999999999999999999887653
No 102
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.70 E-value=5.5e-17 Score=185.18 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=97.2
Q ss_pred EEecHHHHHHHHHHHHHHhhccCCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 002879 384 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 459 (871)
Q Consensus 384 v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (871)
+.+|+.+|.|||.|||+||+||+..| .|.|++.....
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~--------------------------------------- 66 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--------------------------------------- 66 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET---------------------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC---------------------------------------
Confidence 45688999999999999999999765 56666543210
Q ss_pred CCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCC-CCCCcccccHHHHHHHHHHcCCE-EEEEEeCC
Q 002879 460 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPN 537 (871)
Q Consensus 460 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~-~~~~GtGLGLsI~k~lv~~~gG~-I~v~S~~g 537 (871)
+...+.|+|+|||+||+++.++++|++|++.+.... +..+|+||||++|+.++++|||+ |++.|.++
T Consensus 67 -----------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~ 135 (471)
T 1mu5_A 67 -----------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPV 135 (471)
T ss_dssp -----------TTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECT
T ss_pred -----------cCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecC
Confidence 012478999999999999999999999988765433 45689999999999999999999 99999999
Q ss_pred CeE-EEEEEEEeCC
Q 002879 538 IGS-TFTFTAVFGN 550 (871)
Q Consensus 538 ~Gs-~F~~~lp~~~ 550 (871)
.|+ +|+|++|+..
T Consensus 136 ~g~~~~~~~Lpl~~ 149 (471)
T 1mu5_A 136 NSKRIYTFKLKIDI 149 (471)
T ss_dssp TCSEEEEEEEEECT
T ss_pred CCceEEEEEEeccc
Confidence 997 9999999864
No 103
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.69 E-value=1.6e-16 Score=150.92 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=108.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhhcccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFN 799 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~ 799 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.|| +++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~----- 77 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-EENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ----- 77 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH-HSCEEEEEEETTTTC-----CCHHHHHHHHHHH-----
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH-cCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh-----
Confidence 58999999999999999999999999999999999999985 46799999999999 99999999999973
Q ss_pred ccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 800 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 800 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 78 -----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 78 -----------------YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp -----------------CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred -----------------CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999999999999999999999999887653
No 104
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.69 E-value=5.8e-17 Score=154.60 Aligned_cols=119 Identities=24% Similarity=0.372 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 77 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWDTIRAILDNS-------- 77 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TCCCEEEEEESCCSSSCHHHHHHHHHHTT--------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhc--------
Confidence 468999999999999999999999999999999999999985 46799999999999999999999999721
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+
T Consensus 78 ------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 78 ------------LEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp ------------CCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 135799999999998888899999999999999999999999988754
No 105
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.69 E-value=9.5e-17 Score=184.94 Aligned_cols=117 Identities=26% Similarity=0.408 Sum_probs=107.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++.++..++.+|+..|+.|..+.+|.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~l~~~~--------- 71 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA-RDLPDIILLDVMMPGMDGFTVCRKLKDDP--------- 71 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHST---------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHhcCc---------
Confidence 48999999999999999999999999999999999999885 46799999999999999999999999731
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
..+++|||++|+..+.+...+|+++|++|||.||++.++|..+|++.
T Consensus 72 -----------~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~ 118 (459)
T 1w25_A 72 -----------TTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 118 (459)
T ss_dssp -----------TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHH
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 13579999999999999999999999999999999999999988764
No 106
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.69 E-value=3.4e-17 Score=156.08 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=97.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++..+..++.+|+.. +.|.++.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 72 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID-HHHPDLVILDMDIIGENSPNLCLKLKRSK--------- 72 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH-HHCCSEEEEETTC------CHHHHHHTST---------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHcCc---------
Confidence 58999999999999999999988 99999999999999985 46799999999999999999999999732
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+++|||++|+....+...+|+++|+++|+.||++.++|..+|.+.+
T Consensus 73 -----------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 73 -----------GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp -----------TCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -----------ccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 125799999999999999999999999999999999999999998754
No 107
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.69 E-value=1.8e-16 Score=151.01 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=103.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+.. +.|..+.++.+|++.+. .+.||+||+|+.||+|||++++++||+.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~---------- 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-EEWVQVIICDQRMPGRTGVDFLTEVRER---------- 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-HSCEEEEEEESCCSSSCHHHHHHHHHHH----------
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHHh----------
Confidence 37999999999999999999875 99999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS-GMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~-G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.....++++. |+++||.||++.++|..+|.+.+
T Consensus 70 ------------~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 117 (139)
T 2jk1_A 70 ------------WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAA 117 (139)
T ss_dssp ------------CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHH
Confidence 246899999999888888889876 59999999999999999987653
No 108
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.69 E-value=7.7e-17 Score=166.76 Aligned_cols=116 Identities=27% Similarity=0.420 Sum_probs=107.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~lr~~---------- 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL-NEPFDVVILDIMLPVHDGWEILKSMRES---------- 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHT----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 72 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 118 (225)
T 1kgs_A 72 ------------GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALI 118 (225)
T ss_dssp ------------TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999998754
No 109
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.69 E-value=2.2e-16 Score=150.78 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=108.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEEEEcCHHHHHHHhCC-----CCCccEEEEeCCCCCCCHHHHHHHHHhhhc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP-----PHQFDACFMDIQMPEMDGFEATKIIREMEH 796 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~~a~~g~eAl~~l~~-----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~ 796 (871)
..+||||||++..+..++.+|++.|+ .|..+.++.+|++.+.. ...||+||+|+.||+++|+++++.||+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~- 85 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS- 85 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc-
Confidence 35899999999999999999999998 99999999999998853 26799999999999999999999999732
Q ss_pred cccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 797 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 797 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
..+++|||++|+....+...+++++|+++|+.||++.++|..++..+..
T Consensus 86 -------------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 -------------------SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp -------------------GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred -------------------cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1247899999999999999999999999999999999999999887654
No 110
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.68 E-value=1.8e-16 Score=150.68 Aligned_cols=116 Identities=23% Similarity=0.351 Sum_probs=107.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+||||||++..+..++.+|+..|+.+. ++.++.+|++.+. ...||+||+|+.|| +++|+++++.||+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~~~~~~~g~~~~~~l~~~------- 80 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP-DLRPDIALVDIMLCGALDGVETAARLAAG------- 80 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCCSSSCHHHHHHHHHHH-------
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCCHHHHHHHHHhC-------
Confidence 46899999999999999999999999999 5999999999885 46799999999999 89999999999973
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 81 ----------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 81 ----------------CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp ----------------SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999998754
No 111
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.68 E-value=1.2e-16 Score=179.71 Aligned_cols=115 Identities=24% Similarity=0.429 Sum_probs=107.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..++.+|+..||.|..+.+|.+|++.+. ...||+||+|++||+|||++++++||+.
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~ell~~lr~~----------- 69 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-EKHFNVVLLDLLLPDVNGLEILKWIKER----------- 69 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHHHHH-----------
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh-----------
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.+...+|+++|++|||.||++.++|...|.+.+
T Consensus 70 -----------~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 70 -----------SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAI 116 (387)
T ss_dssp -----------CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999887654
No 112
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.68 E-value=6e-17 Score=155.47 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=93.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccc
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 800 (871)
.+.+||||||++..+..++.+|++. |+.++ ++.++.+|++.+.....||+||+|+.||+|||++++++||+..
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~----- 86 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKT----- 86 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHC-----
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----
Confidence 3568999999999999999999998 88865 8999999999885332799999999999999999999999731
Q ss_pred cccccccchhhhccCCCCCccEEEEcc--CCCHHHHHHHHHcCCCEEEeCCCCHHHH
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTA--DVIQATYEECLRSGMDGYVSKPFEAEQL 855 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa--~~~~~~~~~~~~~G~d~yl~KP~~~~~L 855 (871)
..|||++|+ ....+...+|+++|+++||.||++.++|
T Consensus 87 ------------------~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 87 ------------------RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp ------------------CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred ------------------CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 378998887 6666778899999999999999994433
No 113
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.67 E-value=2.6e-16 Score=146.41 Aligned_cols=119 Identities=21% Similarity=0.309 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++..+..++..|++.|+.|..+.++.+|++.+. .+.||+||+|+.|| +++|++++++||+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~-------- 76 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-RDRPDLVVLAVDLSAGQNGYLICGKLKKDD-------- 76 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH-HHCCSEEEEESBCGGGCBHHHHHHHHHHST--------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH-hcCCCEEEEeCCCCCCCCHHHHHHHHhcCc--------
Confidence 58999999999999999999999999999999999999885 46799999999999 999999999999742
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+++|||++ +....+...+++++|+++|+.||++.++|...|++.+..
T Consensus 77 ------------~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 77 ------------DLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp ------------TTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred ------------cccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 1357899999 888888899999999999999999999999999987654
No 114
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.67 E-value=2.5e-16 Score=164.87 Aligned_cols=117 Identities=26% Similarity=0.418 Sum_probs=108.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+.
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~~~~~lr~~---------- 74 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-ELRPDLVLLDLMLPGMNGIDVCRVLRAD---------- 74 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHTT----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 48999999999999999999999999999999999999884 4679999999999999999999999962
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
+.+|||++|+..+.+...+++++|++||+.||++.++|..+|.+.+..
T Consensus 75 -------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 75 -------------SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp -------------CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred -------------CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 268999999999999999999999999999999999999999988764
No 115
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.67 E-value=1.8e-16 Score=152.79 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=83.1
Q ss_pred ecHHHHHHHHHHHHHHhhccCCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002879 386 GDPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 461 (871)
Q Consensus 386 ~D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (871)
.|...+.+++.||+.||+||+.. |.|.|++...+
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~------------------------------------------ 72 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIED------------------------------------------ 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEET------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeC------------------------------------------
Confidence 58899999999999999999954 77777764321
Q ss_pred CCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEE
Q 002879 462 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 541 (871)
Q Consensus 462 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~ 541 (871)
..+.|+|+|+|+||+ .++++|+||++.+. ...|+||||+||+++++ ++.++|.+++||+
T Consensus 73 -----------~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~ 131 (145)
T 1th8_A 73 -----------GVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEVNKGTT 131 (145)
T ss_dssp -----------TEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEETTTEEE
T ss_pred -----------CEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCCCCCEE
Confidence 247899999999999 88999999997543 34689999999999988 9999999999999
Q ss_pred EEEEEEeCCC
Q 002879 542 FTFTAVFGNG 551 (871)
Q Consensus 542 F~~~lp~~~~ 551 (871)
|++++|+...
T Consensus 132 v~~~lp~~~~ 141 (145)
T 1th8_A 132 VYLKKHGIHH 141 (145)
T ss_dssp EEEEECCC--
T ss_pred EEEEEecccc
Confidence 9999998643
No 116
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.67 E-value=4.7e-17 Score=168.90 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=104.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHH-cCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh-hhcccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKR-YGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE-MEHNFNNR 801 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~-~g~~v~~-a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~-~~~~~~~~ 801 (871)
.+||||||++..+..++.+|++ .|+.+.. +.++.+|+..+.....||+||+|++||+|||++++++||+ .
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~------- 80 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHIS------- 80 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHH-------
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhh-------
Confidence 4899999999999999999995 6888865 5677777764324567999999999999999999999997 3
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
.+++|||++|+..+.+....++++|++|||.||++.++|..+|++.+..
T Consensus 81 ---------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 81 ---------------CPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp ---------------CTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred ---------------CCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 3468999999999999999999999999999999999999999887654
No 117
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.66 E-value=1.7e-16 Score=165.12 Aligned_cols=116 Identities=28% Similarity=0.445 Sum_probs=107.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+.
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~---------- 76 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT-ENRPDAIVLDINMPVLDGVSVVTALRAM---------- 76 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESSCSSSCHHHHHHHHHHT----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+++|||++|+..+.+...+++++|++||+.||++.++|..+|.+.+
T Consensus 77 ------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 123 (233)
T 1ys7_A 77 ------------DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALL 123 (233)
T ss_dssp ------------TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 24689999999999988899999999999999999999999998754
No 118
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.66 E-value=5.8e-16 Score=145.51 Aligned_cols=119 Identities=25% Similarity=0.373 Sum_probs=105.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 802 (871)
..+||||||++..+..++..|+..|+.|..+.++.+|++.+.....||+||+|+.||+ ++|++++++||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~-------- 76 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREI-------- 76 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHH--------
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhc--------
Confidence 4689999999999999999999999999999999999999853227999999999997 9999999999974
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+++|||++|+....+...+++++| +|+.||++.++|..+|++.+...
T Consensus 77 --------------~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 77 --------------DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp --------------CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred --------------CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 2468999999999888888887776 89999999999999999876543
No 119
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.66 E-value=4.7e-16 Score=142.38 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=105.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
++||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~-~~~~dlii~d~~~~~~~~~~~~~~l~~~~--------- 71 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-LLQPIVILMAWPPPDQSCLLLLQHLREHQ--------- 71 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEECSTTCCTHHHHHHHHHHTC---------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhcc---------
Confidence 58999999999999999999999999999999999999885 46799999999999999999999999742
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
..+++|||++|+..... +++++|+++|+.||++.++|...+.+.+..
T Consensus 72 -----------~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 118 (119)
T 2j48_A 72 -----------ADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCPP 118 (119)
T ss_dssp -----------CCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCCC
T ss_pred -----------ccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhcC
Confidence 12578999999987766 899999999999999999999999988754
No 120
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.66 E-value=3.1e-16 Score=151.93 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=98.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~-~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..++.+|+.. |+ .|..+.++.+|++.+.....||+||+|+.||+++|+++++.||+.
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 75 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRF-------- 75 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHH--------
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHh--------
Confidence 48999999999999999999988 88 788999999999998532679999999999999999999999974
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+...
T Consensus 76 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 76 --------------DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp --------------CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred --------------CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34689999999999899999999999999999999999999999876543
No 121
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.66 E-value=3e-16 Score=163.04 Aligned_cols=117 Identities=26% Similarity=0.362 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~---------- 73 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-RAGADIVLLDLMLPGMSGTDVCKQLRAR---------- 73 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHH----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHHHcC----------
Confidence 48999999999999999999999999999999999999884 4679999999999999999999999972
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
+++|||++|+....+...+|+++|+++|+.||++.++|..+|.+.+..
T Consensus 74 -------------~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 74 -------------SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp -------------CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred -------------CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999887654
No 122
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.66 E-value=6.2e-16 Score=152.13 Aligned_cols=121 Identities=24% Similarity=0.329 Sum_probs=104.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC-CE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g-~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+||||||++..+..++.+|++.| +. +.++.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~l~~~lr~~------- 96 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI-ELKPDVITMDIEMPNLNGIEALKLIMKK------- 96 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHH-------
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc-cCCCCEEEEeCCCCCCCHHHHHHHHHhc-------
Confidence 3589999999999999999999875 33 457999999999885 4679999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHH--HHHHHHHcCCCEEEeCCCC---------HHHHHHHHhhhCCCCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQA--TYEECLRSGMDGYVSKPFE---------AEQLYREVSRFFPPIPD 868 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~--~~~~~~~~G~d~yl~KP~~---------~~~L~~~l~~~~~~~~~ 868 (871)
. .+|||++|+..... ...+++++|+++||.||++ .++|.+++++.+.....
T Consensus 97 ---------------~-~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~~~ 158 (164)
T 3t8y_A 97 ---------------A-PTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVDPR 158 (164)
T ss_dssp ---------------S-CCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSCC-
T ss_pred ---------------C-CceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCCch
Confidence 2 27999999977654 6678999999999999999 78999999999876543
No 123
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.65 E-value=1.3e-15 Score=144.38 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=106.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+|| ||+++|+++++.||+.
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----~~~~~g~~~~~~l~~~------- 83 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRIKEK------- 83 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HSCCSEEE----ECSTTHHHHHHHHHHH-------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH-cCCCCEEE----EcCccHHHHHHHHHhc-------
Confidence 34679999999999999999999999999999999999999885 46799999 9999999999999973
Q ss_pred ccccccchhhhccCCCC-CccEEEEccCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHhhhCCC
Q 002879 802 IRRGEVSIEAYENVSNF-HVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPP 865 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~-~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~-~~~~L~~~l~~~~~~ 865 (871)
+ ++|||++|+....+...+++++|+++|+.||+ +.++|..+|.+.+..
T Consensus 84 ----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 84 ----------------HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp ----------------STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred ----------------CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 3 58999999999999999999999999999999 999999999988764
No 124
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.65 E-value=2.7e-16 Score=149.97 Aligned_cols=120 Identities=36% Similarity=0.500 Sum_probs=102.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+....
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~------- 82 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ-NRQFDVIIMDIQMPVMDGLEAVSEIRNYERT------- 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH-HSCCSEEEECTTCCSSCHHHHHHHHHHHHHH-------
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHhhhhh-------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999974210
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 865 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~ 865 (871)
...+.+|||++|+........ ++|+++||.||++.++|..+|.+.+..
T Consensus 83 ----------~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 83 ----------HNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp ----------HTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred ----------cCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 013468999999876655433 789999999999999999999987643
No 125
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.65 E-value=8e-16 Score=158.71 Aligned_cols=114 Identities=27% Similarity=0.444 Sum_probs=105.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++.+|+..| .|..+.++.+|++.+ ..||+||+|+.||++||+++++.||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~---------- 68 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE---EAFHVVVLDVMLPDYSGYEICRMIKET---------- 68 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC---SCCSEEEEESBCSSSBHHHHHHHHHHH----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 379999999999999999999999 999999999999976 569999999999999999999999974
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+..+.+...+++++|+++|+.||++.++|..+|.+.+.
T Consensus 69 ------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 69 ------------RPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp ------------CTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 246899999999999999999999999999999999999999987654
No 126
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.64 E-value=3.4e-16 Score=174.12 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=105.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHH-HcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLK-RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~-~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++..+..++.+|. ..|+.|..+.+|.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~G~~~~~~l~~~~-------- 89 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN-QIKPTVILQDLVMPGVDGLTLLAAYRGNP-------- 89 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHHTTST--------
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHhcCc--------
Confidence 379999999999999999996 46899999999999999985 46799999999999999999999999631
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
..+++|||++|+..+.+...+|+++|++|||.||++.++|..+|.+.
T Consensus 90 ------------~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 90 ------------ATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp ------------TTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred ------------ccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 13579999999999999999999999999999999999999888754
No 127
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.64 E-value=1.3e-15 Score=145.54 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=100.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
..+||||||++..+..+...|+.. |+.+ ..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~------- 80 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ-HNKVDAIFLDINIPSLDGVLLAQNISQF------- 80 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HCCCSEEEECSSCSSSCHHHHHHHHTTS-------
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHcc-------
Confidence 358999999999999999999986 8884 58999999999885 4679999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+|||++|+.. +...+++++|+++||.||++.++|..+|.+++
T Consensus 81 ---------------~~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (143)
T 2qv0_A 81 ---------------AHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLT 125 (143)
T ss_dssp ---------------TTCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------CCCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHH
Confidence 2357899999873 46788999999999999999999999998754
No 128
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.64 E-value=7.2e-16 Score=146.47 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=102.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhhcccccc
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 801 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 801 (871)
.+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. . ..||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~~dlvilD~~l~~~~g~~~~~~l~~~------- 85 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS-QLSTCDLLIVSDQLVDLSIFSLLDIVKEQ------- 85 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG-GGGSCSEEEEETTCTTSCHHHHHHHHTTS-------
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhh-------
Confidence 4579999999999999999999999999999999999999885 4 579999999999999999999999962
Q ss_pred ccccccchhhhccCCCCCccEEEEc-cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCCCC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMT-ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 866 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalT-a~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~~~ 866 (871)
.+++|||++| +....+. .+++ +++|+.||++.++|...|.+.+...
T Consensus 86 ---------------~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 86 ---------------TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp ---------------SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred ---------------CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 3478999999 8877766 6666 9999999999999999999987653
No 129
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.63 E-value=4.5e-16 Score=157.68 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=100.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+.+||||||++..+..++.+|...||.|..+.++.+|+ ...||+||+|+.||+|||+ +++.++..
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al-----~~~~dlvl~D~~mp~~~g~-l~~~~~~~-------- 76 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF-----DVPVDVVFTSIFQNRHHDE-IAALLAAG-------- 76 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC-----SSCCSEEEEECCSSTHHHH-HHHHHHHS--------
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC-----CCCCCEEEEeCCCCccchH-HHHHHhcc--------
Confidence 346899999999999999999999999999999988765 2469999999999999999 88888862
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
.+++|||++|+..+.+...+|+++|++|||.||++.++|...|.+.
T Consensus 77 --------------~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~ 122 (196)
T 1qo0_D 77 --------------TPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSA 122 (196)
T ss_dssp --------------CTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHH
Confidence 1478999999999999999999999999999999999999888754
No 130
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.62 E-value=3.8e-16 Score=176.76 Aligned_cols=118 Identities=22% Similarity=0.311 Sum_probs=103.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHH-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~-~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
.+||||||++.++..++.+|++ .|+.|.++.||.+|++.+.....||+||+|++||+|||++++++||+..
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~~-------- 75 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSG-------- 75 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHHT--------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 4899999999999999999998 5789999999999999985324799999999999999999999999742
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQ-----ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~-----~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
+.+|||++|+.... ....+|+++|+++||.||++.++|..+|.+.+.
T Consensus 76 --------------~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~ 127 (400)
T 3sy8_A 76 --------------KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNA 127 (400)
T ss_dssp --------------CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --------------CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHH
Confidence 35678888887766 667789999999999999999999999987653
No 131
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.62 E-value=1.9e-16 Score=164.49 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=105.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g-~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
+||||||++..+..++.+|+..| +.+ ..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~lr~~--------- 72 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP-AARPDVAVLDVRLPDGNGIELCRDLLSR--------- 72 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSEETTEEHHHHHHHHHHH---------
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHHh---------
Confidence 79999999999999999999887 885 47999999999885 4579999999999999999999999973
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.+.+|||++|+..+.+...+++++|++|||.||++.++|..+|.+.+
T Consensus 73 -------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 119 (225)
T 3c3w_A 73 -------------MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVG 119 (225)
T ss_dssp -------------CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998654
No 132
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.61 E-value=4.6e-17 Score=151.01 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=107.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
.+||||||++..+..++..|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 72 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-SKTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-SCCCSCEEECSCSSHHHHCSTHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEeeecCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
.+++|||++|+....+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp ------------CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 246899999999888888999999999999999999999999987653
No 133
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.61 E-value=9.7e-16 Score=162.85 Aligned_cols=103 Identities=22% Similarity=0.343 Sum_probs=88.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHH-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 803 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~-~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 803 (871)
++||||||++..+..+...|.+ .|+.+. +.++.+++..+. ...||+||+|++||+|||++++++||+.
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~-~~~~dlvllD~~mP~~~G~~~~~~lr~~--------- 73 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQ-GDEYVVALVDLTLPDAPSGEAVKVLLER--------- 73 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCC-TTTEEEEEEESCBTTBTTSHHHHHHHHT---------
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhh-cCCCcEEEEeCCCCCCCHHHHHHHHHhC---------
Confidence 5899999999999999999976 477775 556666666664 4689999999999999999999999962
Q ss_pred ccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHH
Q 002879 804 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 853 (871)
Q Consensus 804 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~ 853 (871)
.+|||++|+..+.+...+|+++|++||+.||+...
T Consensus 74 ---------------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 74 ---------------GLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp ---------------TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred ---------------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 47999999999999999999999999999997543
No 134
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.60 E-value=7.5e-15 Score=151.73 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=105.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccccccccc
Q 002879 726 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 726 ~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 805 (871)
+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+|| ||+|||+++++.||+. +
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----lp~~~g~~~~~~lr~~-~--------- 66 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRIKEK-H--------- 66 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT-TSCCSEEE----ECCTTHHHHHHHHHHH-C---------
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh-cCCCCEEE----eCCCCHHHHHHHHHhC-C---------
Confidence 6999999999999999999999999999999999999985 56899999 9999999999999973 1
Q ss_pred ccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHhhhCCCC
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPPI 866 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~-~~~~L~~~l~~~~~~~ 866 (871)
.++|||++|+..+.+...+++++|+++|+.||+ +.++|..+|.+.+...
T Consensus 67 ------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 67 ------------SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ------------TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ------------CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 268999999999999999999999999999999 9999999999887653
No 135
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.53 E-value=2.9e-14 Score=157.79 Aligned_cols=115 Identities=19% Similarity=0.279 Sum_probs=100.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~-g~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
.+||||||++..+..++.+|++. |+. +..+.++.+|++.+. ...||+|++|+.||+|||++++++||+.
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~-~~~pDlVllDi~mp~~dGlell~~l~~~-------- 74 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK-KFNPDVLTLDVEMPRMDGLDFLEKLMRL-------- 74 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEECCCSSSCHHHHHHHHHHS--------
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHHHhc--------
Confidence 48999999999999999999986 888 569999999999885 4679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCH--HHHHHHHHcCCCEEEeCCCCH---------HHHHHHHhhhC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQ--ATYEECLRSGMDGYVSKPFEA---------EQLYREVSRFF 863 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~--~~~~~~~~~G~d~yl~KP~~~---------~~L~~~l~~~~ 863 (871)
. .+|||++|+.... +...+++++|++|||.||++. ++|...|++..
T Consensus 75 --------------~-p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~ 131 (349)
T 1a2o_A 75 --------------R-PMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAA 131 (349)
T ss_dssp --------------S-CCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHH
T ss_pred --------------C-CCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHH
Confidence 2 3899999998775 458899999999999999983 78888876543
No 136
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.50 E-value=2e-14 Score=174.64 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=102.9
Q ss_pred eEEEEeCCH-HH-------HHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC----CCHHHHHHHHHh
Q 002879 726 KILIVDDNN-VN-------LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE----MDGFEATKIIRE 793 (871)
Q Consensus 726 ~ILvVdDn~-~n-------~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~----mdG~e~~~~IR~ 793 (871)
+||||||++ .. ++.++..|++.||+|..+.||++|+..+.....||+|++|++||+ |||++++++||+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~ 81 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHH
Confidence 799999999 88 999999999999999999999999999964445999999999999 999999999998
Q ss_pred hhccccccccccccchhhhccCCCCCccEEEEccCCC-HHHHHHHHHcCCCEEEeCCCCHHH-HHHHHhh
Q 002879 794 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI-QATYEECLRSGMDGYVSKPFEAEQ-LYREVSR 861 (871)
Q Consensus 794 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~-~~~~~~~~~~G~d~yl~KP~~~~~-L~~~l~~ 861 (871)
. ...+|||++|+... .+++...+..|+|||+.|||+..+ |...|..
T Consensus 82 ~----------------------~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a 129 (755)
T 2vyc_A 82 R----------------------QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVA 129 (755)
T ss_dssp H----------------------STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHH
T ss_pred h----------------------CCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHH
Confidence 4 23699999999888 888999999999999999999999 6555553
No 137
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.46 E-value=7.4e-14 Score=163.14 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=88.1
Q ss_pred EEecHHHHHHHHHHHHHHhhccCCC-C---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 002879 384 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 459 (871)
Q Consensus 384 v~~D~~rl~qIl~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (871)
+.+|+.+|.||+.|||+||++|+.. | .|.|.+....
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~---------------------------------------- 70 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTG---------------------------------------- 70 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET----------------------------------------
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC----------------------------------------
Confidence 5689999999999999999999974 5 5665543210
Q ss_pred CCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCC--CCCCCCCcccccHHHHHHHHHHcCCE-EEEEEeC
Q 002879 460 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP--SISRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 536 (871)
Q Consensus 460 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~--s~~~~~~GtGLGLsI~k~lv~~~gG~-I~v~S~~ 536 (871)
...+.|+|+|+|+|||++.++++|++|+.... ......+|+|+||++|+.+++.|||+ |.++|..
T Consensus 71 ------------~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~ 138 (621)
T 2q2e_B 71 ------------PDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKT 138 (621)
T ss_dssp ------------TTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred ------------CcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeec
Confidence 02468999999999999999999988754432 11234589999999999999999999 8999988
Q ss_pred CC---eEEEEEEEEeCC
Q 002879 537 NI---GSTFTFTAVFGN 550 (871)
Q Consensus 537 g~---Gs~F~~~lp~~~ 550 (871)
+. |++|+|.+|...
T Consensus 139 ~gg~~g~~~~~~lp~~~ 155 (621)
T 2q2e_B 139 SPTAPAHYYELMINTST 155 (621)
T ss_dssp SSSSCEEEEECCCCSSS
T ss_pred cCCccceEEEEecchhc
Confidence 74 666666555543
No 138
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.92 E-value=3.4e-10 Score=117.33 Aligned_cols=93 Identities=27% Similarity=0.371 Sum_probs=75.2
Q ss_pred CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccC
Q 002879 749 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 828 (871)
Q Consensus 749 ~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~ 828 (871)
+.|..+.|+.+|++.+. ...||+||+|++||+|||++++++||+.. +..||++++..
T Consensus 6 ~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~~p~~~g~~~~~~l~~~~----------------------~~~~i~vi~~~ 62 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEIMKID----------------------PNAKIIVCSAM 62 (237)
T ss_dssp EEEECCCSSSTTHHHHH-HHCCSCEEEECCSTTSSHHHHHHHHHHHS----------------------SSCCEEEECCS
T ss_pred EEEEECCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHhC----------------------CCCCEEEEECC
Confidence 34455889999999885 45799999999999999999999999742 12345555555
Q ss_pred CCHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHhhhCC
Q 002879 829 VIQATYEECLRSGMDGYVSKP--FEAEQLYREVSRFFP 864 (871)
Q Consensus 829 ~~~~~~~~~~~~G~d~yl~KP--~~~~~L~~~l~~~~~ 864 (871)
...+...+++++|+++|+.|| ++..+|...+.+.+.
T Consensus 63 ~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 63 GQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp STHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 568899999999999999999 888888888876654
No 139
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.52 E-value=5.5e-08 Score=108.37 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=65.4
Q ss_pred EecHHHHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002879 385 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 464 (871)
Q Consensus 385 ~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (871)
.++...+.+++.|+++||+++ ..+.|.|.+..
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~----------------------------------------------- 62 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE----------------------------------------------- 62 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT-----------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc-----------------------------------------------
Confidence 478899999999999999995 35667666520
Q ss_pred CCCCCCCceeEEEEEEecCCCCChhhHhh--------hcccccccCC----CCCCCCCcccccHHHHHHHHHHcC
Q 002879 465 FKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVGP----SISRTHGGTGIGLSISKYLVGRMK 527 (871)
Q Consensus 465 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------iF~pF~q~~~----s~~~~~~GtGLGLsI~k~lv~~~g 527 (871)
+ -.|+|+|+|+|||++.+++ +|.+|+.... ......|+.|+||++|+.+++.+.
T Consensus 63 ------~---~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~ 128 (390)
T 1kij_A 63 ------D---GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 128 (390)
T ss_dssp ------T---SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred ------C---CEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceE
Confidence 0 0489999999999999888 9998876532 111234679999999999997653
No 140
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.41 E-value=4.6e-07 Score=99.14 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002879 390 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 469 (871)
Q Consensus 390 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (871)
++.+++.|||+||+++. ...|.|.+.. .
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~--~------------------------------------------------- 51 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER--G------------------------------------------------- 51 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG--G-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe--C-------------------------------------------------
Confidence 57899999999999998 4566665531 0
Q ss_pred CCceeEEEEEEecCCCCChhhHhhhcccccccCCCC------CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCC
Q 002879 470 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 538 (871)
Q Consensus 470 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~------~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~ 538 (871)
....|+|.|+|+||+++++..+|++|++.+... ....|+.|+||+.+..+ +++.+.|....
T Consensus 52 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 52 ---GAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp ---GTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred ---CceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 012589999999999999999999998754211 12457799999987544 37889888643
No 141
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.38 E-value=1.6e-06 Score=78.15 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 261 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 333 (871)
Q Consensus 261 ~~~~~~~~e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~ 333 (871)
+.++..+.+.....+.+|++++|||+||||++|.++++++.+ ...++++.+..++++|..+++++|++
T Consensus 46 ~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 46 IERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555556677889999999999999999999998753 23445699999999999999999987
No 142
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.33 E-value=9.4e-07 Score=97.57 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002879 390 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 469 (871)
Q Consensus 390 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (871)
++.+++.|||+||+++. .+.|.|.+.. .
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~--~------------------------------------------------- 61 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKD--Y------------------------------------------------- 61 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEG--G-------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEe--C-------------------------------------------------
Confidence 57899999999999986 4566665531 0
Q ss_pred CCceeEEEEEEecCCCCChhhHhhhcccccccCCCCC------CCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 470 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 470 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~------~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
....|+|.|+|+||++++++++|++|++.+.... ...|-.|+||+.+..+ . .+.+.|...
T Consensus 62 ---~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~~ 127 (365)
T 1h7s_A 62 ---GVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCHA 127 (365)
T ss_dssp ---GTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEECT
T ss_pred ---CcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEccC
Confidence 0125899999999999999999999997643211 1123349999876554 3 788888764
No 143
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.28 E-value=1.8e-06 Score=94.12 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002879 390 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 469 (871)
Q Consensus 390 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (871)
++.+++.|||.||+++. .+.|.|.+. +.
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~------------------------------------------------- 55 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EG------------------------------------------------- 55 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GG-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57899999999999995 456666653 10
Q ss_pred CCceeEEEEEEecCCCCChhhHhhhcccccccCCCCC------CCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 470 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 470 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~------~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
....|+|.|+|+|||+++++++|+||+..+.... ...|--|.||+-...+. ++.+.|...
T Consensus 56 ---~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~ 121 (348)
T 3na3_A 56 ---GLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTA 121 (348)
T ss_dssp ---GTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECT
T ss_pred ---CEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEEC
Confidence 0125899999999999999999999998754321 22344588887554442 689988764
No 144
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.21 E-value=1.3e-06 Score=98.27 Aligned_cols=90 Identities=24% Similarity=0.239 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHhhccC----CCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002879 387 DPGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 462 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (871)
+...+..++.+|+.||++|+ ..|.|.|++....
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~------------------------------------------- 330 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAG------------------------------------------- 330 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-------------------------------------------
Confidence 35679999999999999998 3678888775321
Q ss_pred CCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 002879 463 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 542 (871)
Q Consensus 463 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~Gs~F 542 (871)
...+.|+|.|+|+|+|+. + ..++.|+||.|++.|++.+ .+.+. +.|+++
T Consensus 331 ---------~~~l~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~----~~~~~-~~G~~v 379 (399)
T 3ke6_A 331 ---------DGNVRASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEA----RIMHG-AGGTTA 379 (399)
T ss_dssp ---------TSEEEEEEEESCBC-----------------------------CHHHHHTTSSEE----EEEEE-TTEEEE
T ss_pred ---------CCEEEEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhe----eeEEC-CCcEEE
Confidence 124789999999999875 0 1246799999999988754 45544 579999
Q ss_pred EEEEEeCC
Q 002879 543 TFTAVFGN 550 (871)
Q Consensus 543 ~~~lp~~~ 550 (871)
++.+++..
T Consensus 380 ~~~~~~~~ 387 (399)
T 3ke6_A 380 TLTHRLSR 387 (399)
T ss_dssp EEEEECEE
T ss_pred EEEEEcCC
Confidence 99998753
No 145
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.96 E-value=9.7e-06 Score=89.15 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002879 390 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 469 (871)
Q Consensus 390 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (871)
++.+++.|||.||+++. ...|.|.+. +.
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~------------------------------------------------- 52 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DY------------------------------------------------- 52 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TT-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57899999999999986 456666552 10
Q ss_pred CCceeEEEEEEecCCCCChhhHhhhcccccccCCCCC------CCCCcccccHHHHHHHHHHcCCEEEEEEeCC--CeEE
Q 002879 470 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN--IGST 541 (871)
Q Consensus 470 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~------~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g--~Gs~ 541 (871)
....|+|.|+|+||+++.+..+|+||+..+.... ...|--|-||+-+..+ . ++.+.|... .|+.
T Consensus 53 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av----S-~l~V~sr~~~~~~~~ 124 (367)
T 3h4l_A 53 ---GLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI----A-KLSVITTTSPPKADK 124 (367)
T ss_dssp ---TTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS----S-EEEEEEESSTTCEEE
T ss_pred ---CEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc----C-EEEEEEEECCCCEEE
Confidence 0135999999999999999999999997643321 1122237777655443 2 789988764 3544
Q ss_pred EEE
Q 002879 542 FTF 544 (871)
Q Consensus 542 F~~ 544 (871)
..+
T Consensus 125 ~~~ 127 (367)
T 3h4l_A 125 LEY 127 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 146
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=97.96 E-value=3.3e-05 Score=72.75 Aligned_cols=120 Identities=15% Similarity=0.269 Sum_probs=85.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
+++|+|+|||++..+.+.+..|+.+|+. +..++++.+++..+... .++.++.|..+...+ ...++..+++....
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~md---G~el~~~ir~~~~~ 85 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQ---GIDLLKNIRADEEL 85 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCC---HHHHHHHHHhCCCC
Confidence 4578999999999999999999999996 78899999999987764 589999997665433 34456667665443
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
....+++++........... ...|...++.||++...+...+.+.+
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~-~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEA-AQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 33333333332222111111 22367789999999999999988765
No 147
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.81 E-value=0.00016 Score=72.34 Aligned_cols=144 Identities=11% Similarity=0.060 Sum_probs=73.9
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeEeecHHHHHHH
Q 002879 277 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 356 (871)
Q Consensus 277 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~skie~g~~~l~~~~~~l~~ll~~ 356 (871)
+-+....||+.+=|+.|.|++++= .-++..+|+..+....+.... ++++.. ..+..
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~~~~-------~~~i~~-------------P~la~ 78 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKHESK-------LSNLKT-------------PHLAF 78 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHH-------HHTTTC-------------HHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHH-------HHhCCC-------------HHHHH
Confidence 457778999999999999999862 223456676665554443321 333221 11222
Q ss_pred HHHHHHHHHhhcCCEEEE-EeCCCCCceEEecHHHHHHHHHHHHHHhhcc----CCCCeEEEEEEEeeccccchhhhhhh
Q 002879 357 VLSLFSGKSQDKGVELAV-YISDRVPETLIGDPGRFRQIITNLMGNSIKF----TEKGHIFVTVYLVEEVVDSIEVETEL 431 (871)
Q Consensus 357 v~~~~~~~a~~k~i~l~~-~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKf----T~~G~I~v~v~~~~~~~~~~~~~~~~ 431 (871)
++-.. ..+.+.+.+.+ .+++.. .+...+..+..++ +.+.||+.. ...+.|.|.++...
T Consensus 79 lLl~K--~~~a~e~~i~lev~~~~s--~l~~~~~~lgnLi-~na~~Ai~~~~~~~~~~~I~i~i~~~~------------ 141 (192)
T 1ixm_A 79 DFLTF--NWKTHYMTLEYEVLGEIK--DLSAYDQKLAKLM-RKLFHLFDQAVSRESENHLTVSLQTDH------------ 141 (192)
T ss_dssp HHHHG--GGSCCSSEEEEEEESSCC--CCTTTHHHHHHHH-HHHHHHHHHHBCTTSCCEEEEEEECCC------------
T ss_pred HHHHH--HHHhccCCeEEEEecCcc--ccCCCcHHHHHHH-HHHHHHHHhhhccCCCCeEEEEEEEec------------
Confidence 22222 23345555555 233221 1222344443333 222444432 23567777664210
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCCCceeEEEEEEecCCCCChhhHhhhcccccc
Q 002879 432 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 500 (871)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q 500 (871)
+...+.|.|.|+|+||+++.++++|++.+.
T Consensus 142 ---------------------------------------~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 142 ---------------------------------------PDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp ---------------------------------------SSSSCEEEEEEESCBSCGGGCC--------
T ss_pred ---------------------------------------CCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 012468999999999999999999986553
No 148
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.73 E-value=7.7e-05 Score=66.82 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002879 269 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 335 (871)
Q Consensus 269 e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lIndlLd~sk 335 (871)
+.....+.+|++.+|||||||++.|.+.++.+... ..++.+.+...+.+|..++++++++++
T Consensus 54 ~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 54 KQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344577899999999999999999999977543 256778899999999999999998753
No 149
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.67 E-value=1.6e-05 Score=81.69 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=118.0
Q ss_pred EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEEEeccCCccccCcCCCCCCCCce
Q 002879 603 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 682 (871)
Q Consensus 603 v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 682 (871)
|..+.+..+++..+... .++++++|..+...+ ...++..+++.... .+.+++..... ..... .....+...+
T Consensus 8 v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~---g~~~~~~l~~~~~~-~~i~vi~~~~~-~~~~~-~~~~~Ga~~~ 79 (237)
T 3cwo_X 8 VDDATNGREAVEKYKEL--KPDIVTMDITMPEMN---GIDAIKEIMKIDPN-AKIIVCSAMGQ-QAMVI-EAIKAGAKDF 79 (237)
T ss_dssp EECCCSSSTTHHHHHHH--CCSCEEEECCSTTSS---HHHHHHHHHHHSSS-CCEEEECCSST-HHHHH-HHHHTTCCEE
T ss_pred EEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHHhCCC-CCEEEEECCCC-HHHHH-HHHHCCHHhe
Confidence 44455666666665543 357888887654322 23445555543322 12333332222 11111 1112256678
Q ss_pred eecC--CchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHH
Q 002879 683 IMKP--LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 760 (871)
Q Consensus 683 ~~kp--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eA 760 (871)
+.|| +....+...+.+.++.. ..++.+|+...+.. ..+...+.......+..+.
T Consensus 80 l~kp~~~~~~~l~~~i~~~~~~~---------------------~~~~~~d~~~~~~~---~~v~~~~g~~~~~~~~~~~ 135 (237)
T 3cwo_X 80 IVNTAAVENPSLITQIAQTFGSQ---------------------AVVVAIDAKRVDGE---FMVFTYSGKKNTGILLRDW 135 (237)
T ss_dssp EESHHHHHCTHHHHHHHHHHTGG---------------------GEEEEEEEEESSSC---EEEEETTTTEEEEEEHHHH
T ss_pred EeCCcccChHHHHHHHHHHhCCC---------------------ceEEEeeecccCCc---EEEEEeCCccccccCHHHH
Confidence 8898 66667776666655311 12344444321000 0000011122223344555
Q ss_pred HHHhCCCCCccEEEEeC-CCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHH
Q 002879 761 TELLMPPHQFDACFMDI-QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 839 (871)
Q Consensus 761 l~~l~~~~~~DlilmDi-~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~ 839 (871)
++.+......+++++++ .++.|+|++ ++.|++... ..++|||++++..+.++..+|++
T Consensus 136 i~~~~~~~~~~vli~~~~~~g~~~g~~-~~~i~~~~~--------------------~~~~Pvia~~g~~~~~~~~~~~~ 194 (237)
T 3cwo_X 136 VVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRP--------------------LTTLPIIASGGAGKMEHFLEAFL 194 (237)
T ss_dssp HHHHHHHTCSEEEEEETTTTTCCSCCC-HHHHHHHGG--------------------GCCSCEEEESCCCSHHHHHHHHH
T ss_pred HHHHhhcCCCeEEEEecCCCCcccccc-HHHHHHHHH--------------------hcCCCEEecCCCCCHHHHHHHHH
Confidence 55553333457999997 888899976 566665421 23689999999999999999999
Q ss_pred cCCCEEE------eCCCCHHHHHHHHhh
Q 002879 840 SGMDGYV------SKPFEAEQLYREVSR 861 (871)
Q Consensus 840 ~G~d~yl------~KP~~~~~L~~~l~~ 861 (871)
+|||+++ .+|++..++.+.+.+
T Consensus 195 ~G~~~~~vg~a~~~~~~~~~~~~~~l~~ 222 (237)
T 3cwo_X 195 AGADAALAASVFHFREIDVRELKEYLKK 222 (237)
T ss_dssp HTCSEEEESHHHHTTSSCHHHHHHHHHT
T ss_pred cCcHHHhhhHHHHcCCCCHHHHHHHHHH
Confidence 9999995 899999999888764
No 150
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.64 E-value=4.5e-05 Score=78.25 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=38.1
Q ss_pred EEEEEecCCCCChhhHhhhcccccccCC----------CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~----------s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
.|.|.|||+||+++++...|..+.+... ......|..|+|+.-+.. .+-++.|.|...
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~~ 141 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKSN 141 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEecC
Confidence 5899999999999999888766543210 111234557999865533 345677777654
No 151
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=97.43 E-value=0.00048 Score=65.91 Aligned_cols=120 Identities=11% Similarity=0.140 Sum_probs=84.2
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
...+++++|+++..+......|+..|+.+. .+.+..+++..+......++++++|......+ ...++..+++..
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~---g~~~~~~lr~~~-- 109 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMD---GITCLSNIMEFD-- 109 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSC---HHHHHHHHHHHC--
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCcc---HHHHHHHHHhhC--
Confidence 346899999999999999999999999998 89999999998876544678999987764422 233555565543
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
....++++............ ...+...++.||+....+...+.+.+
T Consensus 110 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVKDC-LIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp TTCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCCcEEEEeccCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 22334444443322211111 12256679999999999999888765
No 152
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.39 E-value=0.00036 Score=72.99 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=72.3
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccc
Q 002879 721 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 721 ~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 800 (871)
.+.+++|||||||+.++..+...|...|++|..+.+ .....||++++|..||..++.+
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~--------~~~~~~~~ii~d~~~~~~~~~~-------------- 65 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG--------QEPTPEDVLITDEVVSKKWQGR-------------- 65 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS--------CCCCTTCEEEEESSCSCCCCSS--------------
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC--------CCCCcCcEEEEcCCCccccccc--------------
Confidence 356889999999999999999999999999988875 1245799999999999865421
Q ss_pred cccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
.++.++....... ...+...++.||+...+|...+.+++
T Consensus 66 --------------------~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 66 --------------------AVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp --------------------EEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred --------------------eEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHh
Confidence 1344444321100 12345689999999999998888755
No 153
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.32 E-value=4.1e-05 Score=80.49 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=36.9
Q ss_pred EEEEEecCCCCChhhHhhhcccccccCC---------------CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVGP---------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~---------------s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
.|.|.|||+||+++.+...|..+.+... ......|..|+|++-+..++ .++.|.|...
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~~ 148 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 148 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEec
Confidence 5899999999999998766644322100 01112356899997665443 5677777654
No 154
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.27 E-value=0.00032 Score=73.55 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.8
Q ss_pred EEEEEecCCCCChhhHhhhcccccccCC----------CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~----------s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
.|.|.|||+||+++++...|..+.+... ......|..|+|+.-+..+ .-++.|.|...
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~v----a~~v~V~Sr~~ 183 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 183 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHH----EEEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccC----CCEEEEEEecC
Confidence 4899999999999998777665543211 1112345679999866543 45677777653
No 155
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=97.22 E-value=0.0017 Score=67.40 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=83.4
Q ss_pred eEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhc
Q 002879 539 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 618 (871)
Q Consensus 539 Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~ 618 (871)
||+|++.+|+....... .......+++++|+++..+......|+..|+.+..+.+..+++..+..
T Consensus 1 Gs~~~~~~~~~~~~~~~---------------~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~ 65 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPG---------------ENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE 65 (250)
T ss_dssp ----------------------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CCccccccceeeccCCC---------------CCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh
Confidence 89999999875432211 111235789999999999999999999999999999999999988765
Q ss_pred CCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHH
Q 002879 619 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 698 (871)
Q Consensus 619 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 698 (871)
. .++++++|..+...+ ...++..+++... ...++++............ -..+...++.||+....+...+..
T Consensus 66 ~--~~dlvllD~~lp~~~---g~~~~~~lr~~~~--~~~ii~lt~~~~~~~~~~~-~~~Ga~~yl~Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 66 T--RPDAVILDVXMPGMD---GFGVLRRLRADGI--DAPALFLTARDSLQDKIAG-LTLGGDDYVTKPFSLEEVVARLRV 137 (250)
T ss_dssp H--CCSEEEEESCCSSSC---HHHHHHHHHHTTC--CCCEEEEECSTTHHHHHHH-HTSTTCEEEESSCCHHHHHHHHHH
T ss_pred C--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC--CCCEEEEECCCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHH
Confidence 3 478899987654322 2345556665422 2333333332222111111 123567899999999999999888
Q ss_pred Hhc
Q 002879 699 AMG 701 (871)
Q Consensus 699 ~~~ 701 (871)
.+.
T Consensus 138 ~~~ 140 (250)
T 3r0j_A 138 ILR 140 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 156
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=97.18 E-value=0.0033 Score=57.12 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=82.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..+++.......
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~---g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMD---GFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSC---HHHHHHHHHTSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCc---HHHHHHHHHhcccccCC
Confidence 479999999999999999999999999999999999998865 3578899987654332 23455666654333333
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.+++++........... ...+...++.||+....+...+.+.+
T Consensus 78 pii~~s~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLA-LSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp CEEEEESCCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHh
Confidence 44444333222111111 12356789999999999999888765
No 157
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.15 E-value=0.00014 Score=75.16 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=38.6
Q ss_pred EEEEEecCCCCChhhHhhhcccccccCCC------------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS------------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s------------~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
.|.|.|+|+||+++++...|..+.+.... .....|..|+||.-+-. .+-++.|.|...
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr~~ 164 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTRAA 164 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEecC
Confidence 48999999999999999888766443210 01123568999974432 345677777653
No 158
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=97.07 E-value=0.0047 Score=56.99 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=82.1
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhc-CC
Q 002879 574 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-GC 652 (871)
Q Consensus 574 ~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~ 652 (871)
+.+.+++++|+++..+......|+.+|+.+..+.+..+++..+... . +.+++|......+. ..++..+++. ..
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~-dlvllD~~lp~~~g---~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--H-KVVFMDVCMPGVEN---YQIALRIHEKFTK 78 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT--C-SEEEEECCSSTTTT---THHHHHHHHHHC-
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc--C-CEEEEeCCCCCCcH---HHHHHHHHHhhhh
Confidence 4578999999999999999999999999999999999999877542 3 88898877644332 2334445422 11
Q ss_pred C--CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 653 G--FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 653 ~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
. ..+.+++++........... ...+...++.||+....+...+.+.+.
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKC-MSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred ccCCCceEEEEeCCCCHHHHHHH-HHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 1 12344444433322211111 123566899999999999999988774
No 159
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.03 E-value=0.00058 Score=75.80 Aligned_cols=50 Identities=28% Similarity=0.495 Sum_probs=36.8
Q ss_pred EEEEEecCCCCChhh--------HhhhcccccccC---CCCCCCCCc-ccccHHHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEA--------QSRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 525 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv~~ 525 (871)
.|+|.|+|.|||.+. .+.+|..|+... ....+..+| .|.||+.+..+.+.
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~~ 125 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR 125 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhcc
Confidence 389999999999998 678898876542 111223345 89999999888753
No 160
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=96.99 E-value=0.0058 Score=55.52 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=83.8
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++......
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTS---GLALVKQLRALPMEKT 77 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSB---HHHHHHHHHHSCCSSC
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhhccCC
Confidence 36899999999999999999999999999999999999988764 378899987664322 3345666666533333
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++........ . .....+...++.||+....+.+.+.....
T Consensus 78 ~~ii~~s~~~~~~~-~-~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 78 SKFVAVSGFAKNDL-G-KEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CEEEEEECC-CTTC-C-HHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCEEEEECCcchhH-H-HHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 44444444333222 1 11122456799999999999999987664
No 161
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=96.99 E-value=0.006 Score=56.48 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=85.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|......+ ...++..+++......
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQD---GVSLIRALRRDSRTRD 80 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHTSGGGTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCcccCC
Confidence 46899999999999999999999999999999999999988664 478899887654322 2345566665332233
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++................+...++.||+....+...+.+.+.
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4444444332222211022233677899999999999999988874
No 162
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=96.95 E-value=0.014 Score=53.96 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=84.5
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.....
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMD---GWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSC---HHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 457899999999999999999999999999999999999888764 478899887654322 234556666532233
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...+++++.......... ....+...++.||+....+...+...+.
T Consensus 81 ~~pii~~s~~~~~~~~~~-~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 81 GIAIVMLTAKNAPDAKMI-GLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TEEEEEEECTTCCCCSST-TGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHH-HHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 344444444332222111 1223556789999999999999887764
No 163
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=96.89 E-value=0.0015 Score=60.22 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
+.+|+|+|||++..+......|+.+|++|. .+++..+|+..+... .++.++.|..+...++ ..+...+++..
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~--~~DlvllDi~mP~~~G---~el~~~lr~~~-- 79 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKG--QFDIAIIDVNLDGEPS---YPVADILAERN-- 79 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHC--CSSEEEECSSSSSCCS---HHHHHHHHHTC--
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCH---HHHHHHHHcCC--
Confidence 457899999999999999999999999974 789999999988764 5899999987765443 23445555421
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHH
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 699 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 699 (871)
.|.++ .++.+.... ....+...++.||++...+.+.+.+.
T Consensus 80 -ipvI~--lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~ 119 (123)
T 2lpm_A 80 -VPFIF--ATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQI 119 (123)
T ss_dssp -CSSCC--BCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTT
T ss_pred -CCEEE--EecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHH
Confidence 23322 233222111 11224456899999999998887543
No 164
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=96.87 E-value=0.0057 Score=55.98 Aligned_cols=123 Identities=16% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
.+++++++|+++..+...+..|+..|+. +..+.+..+++..+... ..++++++|..+...+ ...++..+++....
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~---g~~~~~~lr~~~~~ 79 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMN---GLDLVKKVRSDSRF 79 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSC---HHHHHHHHHTSTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhcCCC
Confidence 4578999999999999999999999995 88899999998876543 3468888887654322 23455666654332
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
....+++++........... ...+...++.||+....+...+...++.
T Consensus 80 ~~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITA-LKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHH-HHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCeEEEEeCCCChHHHHHH-HHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 33344444433222111111 1225678999999999999999888753
No 165
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=96.84 E-value=0.017 Score=53.57 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=82.5
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+.+++++|+++..+......|+..|+.+..+.+..+++..+..+ ..++++++|...... .....++..+++. .
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~--~~g~~~~~~l~~~---~ 77 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEG--MDGVQTALAIQQI---S 77 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSS--CCHHHHHHHHHHH---C
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCC--CCHHHHHHHHHhC---C
Confidence 457899999999999999999999999999999999999888653 457889998765321 1223345555553 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...++++............ ...+...++.||+....+...+.+.+.
T Consensus 78 ~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKI-RSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCCEEEEESSSSCCCCGGG-GGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 2334444443332221111 223566899999999999999887764
No 166
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=96.83 E-value=0.0068 Score=57.49 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=85.5
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
+..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.....
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~---g~~~~~~lr~~~~~~ 80 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMD---GYALCRWLKGQPDLR 80 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCCCcC
Confidence 357899999999999999999999999999999999999888653 578999987764432 234556666543323
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
...++++............ ...+...++.||+....+...+.+.+..
T Consensus 81 ~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRS-LECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TSCEEEEECCCSHHHHHHH-HHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 3334444433222111111 1225668999999999999999888753
No 167
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=96.78 E-value=0.025 Score=51.59 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=82.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+...+..|+ .|+.+..+.+..+++..+... .++++++|......+ ...++..+++......
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 77 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMD---GYALCGHFRSEPTLKH 77 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSC---HHHHHHHHHHSTTTTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhCCccCC
Confidence 3689999999999999898998 999999999999999888764 478899887654322 3345566666533333
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..++++........ ......+...++.||+....+...+.+.+..
T Consensus 78 ~pii~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 78 IPVIFVSGYAPRTE--GPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCEEEEESCCC-------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHhH--HHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 44444444332222 2223335678999999999999999988753
No 168
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.76 E-value=0.0079 Score=55.25 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=85.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC-----CCcceEEEeeccccccCcchhHHHHHHhh
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLR 648 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 648 (871)
+++++++|+++..+......|+..|. .+..+.+..+++..+... ...++++++|......+ ...++..++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~---g~~~~~~l~ 78 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKD---GREVLAEIK 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSC---HHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCccc---HHHHHHHHH
Confidence 57899999999999999999999998 999999999999988763 25689999987664322 234556666
Q ss_pred hcCCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 649 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 649 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+........+++++........... ...+...++.||+....+...+.+.+.
T Consensus 79 ~~~~~~~~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 79 SDPTLKRIPVVVLSTSINEDDIFHS-YDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HSTTGGGSCEEEEESCCCHHHHHHH-HHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEecCCcHHHHHHH-HHhchhheecCCCCHHHHHHHHHHHHH
Confidence 5432223344445443332211111 123566899999999999998887763
No 169
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=96.75 E-value=0.0082 Score=55.57 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=83.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++......
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~---g~~~~~~lr~~~~~~~ 78 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGID---GYTLCKRVRQHPLTKT 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHSGGGTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHcCCCcCC
Confidence 46899999999999999999999999999999999999887654 478899887654332 2335555655432223
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..+++++........... ...+...++.||+....+...+.+.+..
T Consensus 79 ~pii~~t~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 79 LPILMLTAQGDISAKIAG-FEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp CCEEEEECTTCHHHHHHH-HHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ccEEEEecCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 334444332222111111 1225667999999999999999888753
No 170
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=96.75 E-value=0.0058 Score=56.68 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=85.2
Q ss_pred CcEEEEeCCchhhhHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccc-ccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++..+......|+. .|+.+..+.+..+++..+... ..++++++|.... .. ....++..+++....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~---~g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEK---EGLEVLSAIRNNSRT 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHH---HHHHHHHHHHHSGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCC---cHHHHHHHHHhCccc
Confidence 46899999999999999999999 999999999999999887653 4578899887653 22 223355566653222
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
....++++............ ...+...++.||+....+...+...+..
T Consensus 80 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRHAA-LKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp TTCCEEEEESCCCHHHHHHH-HHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 33444444433322211111 1235678999999999999999988854
No 171
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=96.73 E-value=0.007 Score=56.63 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=79.2
Q ss_pred ccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcC-
Q 002879 573 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG- 651 (871)
Q Consensus 573 ~~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~- 651 (871)
..++++++++|+++..+......|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++...
T Consensus 11 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~---g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 11 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMN---GLDMLKQLRVMQA 85 (143)
T ss_dssp ----CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSC---HHHHHHHHHHHHH
T ss_pred ccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhchh
Confidence 3567899999999999999999999999999999999999988765 3578999987764433 233445554321
Q ss_pred -CCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 652 -CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 652 -~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
......++++............ ...+...++.||+....+...+.+..
T Consensus 86 ~~~~~~pii~~s~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 86 SGMRYTPVVVLSADVTPEAIRAC-EQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp TTCCCCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred ccCCCCeEEEEeCCCCHHHHHHH-HHcChhheeeCCCCHHHHHHHHHHHH
Confidence 1122334444333222111111 12356789999999999999988765
No 172
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=96.70 E-value=0.02 Score=60.86 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=84.4
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeecccc-ccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 653 (871)
+.+++++|+++..+.+....|+.+|+.|. .+.++.+++..+... .++++++|..+. ..++-. +...++...
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e---~~~~ir~~~-- 232 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGID---AVKDILGRM-- 232 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTT---TTHHHHHHT--
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHH---HHHHHHhcC--
Confidence 45899999999999999999999999999 999999999998764 489999998776 344322 234444443
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..|.+++.+. +. .... ....|...++.||+....|...+.+.+..
T Consensus 233 ~~piI~lT~~--~~-~~~~-~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 233 DVPVIFITAF--PE-RLLT-GERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp TCCEEEEESC--GG-GGCC-SSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--HH-HHHH-HHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 2243333332 22 1222 22336778999999999999999988854
No 173
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=96.69 E-value=0.019 Score=51.62 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=82.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccc-ccCcchhHHHHHHhhhcCCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
.+++++|+++..+......|+..|+++..+.+..+++..+... .++.+++|.... ..+ ...++..+++......
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~---g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQN---GYLICGKLKKDDDLKN 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCB---HHHHHHHHHHSTTTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCC---HHHHHHHHhcCccccC
Confidence 5899999999999999999999999999999999999887653 478888887654 222 2345566665432233
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++ ........... ...+...++.||+....+...+.+.+.
T Consensus 81 ~~ii~~-~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQHRK-LKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp SCEEEE-ECGGGHHHHHH-STTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEE-ecCCchhHHHH-HHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 334444 33222211111 223567899999999999999988774
No 174
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=96.66 E-value=0.012 Score=55.45 Aligned_cols=121 Identities=11% Similarity=0.181 Sum_probs=84.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhc-------CCCcceEEEeeccccccCcchhHHHHHH
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS-------GSKIINMILVEQEVWEKDTSVSTLFVNN 646 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 646 (871)
..+++++|+++..+......|+..|. .+..+.+..+++..+.. ....++++++|......+ ...++..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~---g~~~~~~ 80 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMT---GIDILKL 80 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSB---HHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCc---HHHHHHH
Confidence 46899999999999999999999999 89999999999998852 246789999997764322 3345666
Q ss_pred hhhcCCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 647 LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 647 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
+++........++++............ ...+...++.||+....+...+.+..
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRC-YDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHH-HHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHH-HHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 666433333444444443332211111 12356789999999999999988765
No 175
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=96.61 E-value=0.0085 Score=55.65 Aligned_cols=124 Identities=11% Similarity=0.152 Sum_probs=86.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhc---CCCcceEEEeeccccccCcchhHHHHHHhhh
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRK 649 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 649 (871)
+..+++++|+++..+......|...|. .+..+.+..+++..+.. ....++++++|......+ ...++..+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~ 84 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGIN---GWELIDLFKQ 84 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSC---HHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC---HHHHHHHHHH
Confidence 346899999999999999999999999 89999999999988765 225688999987654322 2335556665
Q ss_pred cC--CCCCceEEEEeccCCccccCcCCCCCC-CCceeecCCchHHHHHHHHHHhcC
Q 002879 650 LG--CGFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 650 ~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.. ......++++.............. .+ ...++.||+....+...+.+....
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~-~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEA-SDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHH-CSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHh-cCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 32 223344444444332222222212 24 678999999999999999988754
No 176
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=96.60 E-value=0.0077 Score=60.49 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=84.4
Q ss_pred HHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEeCCchhhhHHHHHHHHHhCc
Q 002879 522 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 601 (871)
Q Consensus 522 lv~~~gG~I~v~S~~g~Gs~F~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vd~~~~~~~v~~~~l~~~g~ 601 (871)
-+.+|||.|+++|++|+||+|+|++|+......... ..........+.++|+||+++..+......|+.+|+
T Consensus 15 ~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~--------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~ 86 (206)
T 3mm4_A 15 PRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQET--------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGV 86 (206)
T ss_dssp C-----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cccccCCceeeeccCCCcceeeeccCCCCCcccccc--------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999998654322111 111122345778999999999999999999999999
Q ss_pred -EEEEeCCHHHHHHHHhcC-----------CCcceEEEeeccccccCcchhHHHHHHhhhcCC--CCCceEEEEeccCCc
Q 002879 602 -QVEVVSDQLQCLSQIASG-----------SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC--GFQSKLFLLANSISS 667 (871)
Q Consensus 602 -~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~ 667 (871)
.+..+.+..+++..+... ...++++++|..+...+ ...++..+++... .....++++......
T Consensus 87 ~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~---G~el~~~lr~~~~~~~~~~piI~ls~~~~~ 163 (206)
T 3mm4_A 87 SEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMD---GYEATREIRKVEKSYGVRTPIIAVSGHDPG 163 (206)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSC---HHHHHHHHHHHHHTTTCCCCEEEEESSCCC
T ss_pred CeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCC---HHHHHHHHHhhhhhcCCCCcEEEEECCCCc
Confidence 999999999999987653 34689999998764432 2334555555321 122334444332211
Q ss_pred cccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 668 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 668 ~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..........+...++.||+. .+...+.+.+.
T Consensus 164 ~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 164 SEEARETIQAGMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp HHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-
T ss_pred HHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHh
Confidence 111111112256689999998 78888877764
No 177
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=96.60 E-value=0.015 Score=53.02 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=83.5
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
++.+++++|+++..+......|++.|+.+..+.+..+++..+... .++++++|......+ ...++..+++.....
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 79 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLD---GLDVIRSLRQNKVAN 79 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBC---HHHHHHHHHTTTCSS
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcCccC
Confidence 357899999999999999999999999999999999999887654 468888887654322 234556666543223
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.+.++++.. ......... ...+...++.||+....+...+.+....
T Consensus 80 ~~~ii~~~~-~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 80 QPKILVVSG-LDKAKLQQA-VTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CCEEEEECC-SCSHHHHHH-HHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred CCeEEEEeC-CChHHHHHH-HHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 344444433 222211111 1225668999999999999999887753
No 178
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=96.57 E-value=0.019 Score=51.63 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=80.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.. ..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~---g~~~~~~lr~~~---~~ 74 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKD---GVEVCREVRKKY---DM 74 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTH---HHHHHHHHHTTC---CS
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC---CC
Confidence 5799999999999999999999999999999999999887654 478899887654322 233455565432 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++........... ...+...++.||+....+...+.+.+.
T Consensus 75 ~ii~~t~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 75 PIIMLTAKDSEIDKVIG-LEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CEEEEEESSCHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 34444332222111111 123567899999999999998887663
No 179
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=96.53 E-value=0.018 Score=52.87 Aligned_cols=121 Identities=11% Similarity=0.158 Sum_probs=85.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|......+ ...++..+++.. ...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~-~~~ 81 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPES---GLDLIRTIRASE-RAA 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSC---HHHHHHHHHTST-TTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCC---HHHHHHHHHhcC-CCC
Confidence 46899999999999999999999999999999999998887653 2478899887654332 334556666543 223
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..++++............ ...+...++.||+....+...+++....
T Consensus 82 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVDV-MHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp CEEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CCEEEEeCCCChHHHHHH-HhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 444444443322111111 1235678999999999999999988854
No 180
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.52 E-value=0.00098 Score=68.26 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=38.6
Q ss_pred EEEEEecCCCCChhhHhhhcccccccC----------CCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVG----------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 538 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~----------~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~ 538 (871)
.|.|.|+|+||+++++...|....... .......|-.|+||+-+-. .+-++.|.|....
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~----vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHND 148 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc----cCCEEEEEEecCC
Confidence 589999999999999877665432210 0112345667999976532 2337888887643
No 181
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=96.52 E-value=0.014 Score=53.22 Aligned_cols=120 Identities=12% Similarity=0.235 Sum_probs=79.9
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 574 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 574 ~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++...
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMN---GLKLLEHIRNRGD- 78 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC--------CHHHHHHHHHTTC-
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHhcCC-
Confidence 4568999999999999999999999999999999999999888543 478899887654322 2334555555322
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCC-chHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~~~ 701 (871)
...+++++........... ...+...++.||+ ....+...+...+.
T Consensus 79 -~~~ii~~t~~~~~~~~~~~-~~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 79 -QTPVLVISATENMADIAKA-LRLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp -CCCEEEEECCCCHHHHHHH-HHHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred -CCCEEEEEcCCCHHHHHHH-HHcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 3344444433322211111 1225667999999 88899998888774
No 182
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=96.52 E-value=0.02 Score=53.05 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=85.5
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC----CCcceEEEeeccccccCcchhHHHHHHhhh
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG----SKIINMILVEQEVWEKDTSVSTLFVNNLRK 649 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 649 (871)
..+++++|+++..+......|...|. .+..+.+..+++..+... ...++.+++|......+ ...++..+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~---g~~~~~~l~~ 83 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMN---GIEFLKELRD 83 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSC---HHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCC---HHHHHHHHHc
Confidence 46899999999999999999999998 999999999999988752 25688999987654322 2345556655
Q ss_pred cCCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCC
Q 002879 650 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 703 (871)
Q Consensus 650 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~ 703 (871)
........++++............ ...+...++.||+....+...++...+.+
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~~~~~~~~~ 136 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAF-ESLNIRGHLIKPLDYGEAIKLFWILQSME 136 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHH-TTTTCCEEEESSCCHHHHHHHHHHHHHC-
T ss_pred CccccCCcEEEEeCCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 432123444555443332221111 22356789999999999999988766543
No 183
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.49 E-value=0.016 Score=53.85 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=85.0
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcCC--------CcceEEEeeccccccCcchhHHHH
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGS--------KIINMILVEQEVWEKDTSVSTLFV 644 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~ 644 (871)
.+.+++++|+++..+......|+..|+ .+..+.+..+++..+.... ..++++++|......+ ...++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~---g~~~~ 81 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTD---GREVL 81 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSC---HHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCC---HHHHH
Confidence 457899999999999999999999999 8999999999999887532 5688999987654322 23455
Q ss_pred HHhhhcCCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 645 NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 645 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..+++........+++++........... ...+...++.||+....+...+.+.+.
T Consensus 82 ~~l~~~~~~~~~~ii~~t~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEIC-YSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHTTSTTGGGSCEEEEESCCCHHHHHHH-HHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCeEEEEeCCCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 56665432123344444443322111111 123566899999999999998887763
No 184
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=96.46 E-value=0.013 Score=54.61 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=84.6
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.....
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKIS---GMDLFNSLKKNPQTA 81 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHTSTTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCC---HHHHHHHHHcCcccC
Confidence 467899999999999999999999999999999999999887654 478899887654322 234556666532233
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...++++............ ...+...++.||+....+...+...+.
T Consensus 82 ~~pii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQL-LDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp TSCEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 3445555443322111111 123566899999999999999988775
No 185
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=96.46 E-value=0.017 Score=53.49 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=84.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|...|+.+..+++..+++..+......++++++|......+ ...++..+++.. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~~ 78 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS---GMDILREIKKIT--PHM 78 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSC---HHHHHHHHHHHC--TTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCc---HHHHHHHHHHhC--CCC
Confidence 589999999999999999999999999999999999998876556789999987654322 233455555542 223
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++........... ...+...++.||+....+...+..++.
T Consensus 79 ~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 79 AVIILTGHGDLDNAILA-MKEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp EEEEEECTTCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHH-HHhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 44444433322111111 122566899999999999999887764
No 186
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=96.45 E-value=0.00073 Score=69.83 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=36.8
Q ss_pred EEEEEecCCCCChhhHhhhcccccccCCC---------------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS---------------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 538 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s---------------~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g~ 538 (871)
.|.|.|||+||+++++...|..+.+.... .....|..|+|+.-+-.+ ..++.|.|....
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~v----a~~v~V~Sr~~~ 153 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLV----ADKVIVTSKHNN 153 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGT----EEEEEEEEECTT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhc----CCEEEEEEeCCC
Confidence 48999999999999998877655432110 001123478888654433 367888887643
No 187
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=96.44 E-value=0.02 Score=52.78 Aligned_cols=122 Identities=6% Similarity=0.150 Sum_probs=84.4
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHH-hCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 652 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~-~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 652 (871)
...+++++|+++..+......|+. .|+. +..+.+..+++..+... .++++++|......+ ...++..+++...
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMD---GFSICHRIKSTPA 81 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSC---HHHHHHHHHTSTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCc---HHHHHHHHHhCcc
Confidence 357899999999999999999999 9999 99999999999887764 378899887654322 2345556665322
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 653 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 653 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.....+++++........... ...+...++.||+....+...+.+++..
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRI-VALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCCHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 333444544443332211111 1235668999999999999999988754
No 188
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=96.43 E-value=0.018 Score=52.14 Aligned_cols=119 Identities=16% Similarity=0.288 Sum_probs=79.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
..+++++|+++..+......++..|+ .+..+.+..+++..+... .++.+++|......+ ...++..+++.....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~l~~~l~~~~~~~ 78 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMD---GLELLKTIRAXXAMS 78 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSC---HHHHHHHHHC--CCT
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 46799999999999999999999999 799999999999887653 478888887654322 233555666532222
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
...+++++........... ...+...++.||+....+...+.+.+
T Consensus 79 ~~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAA-AQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp TCCEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCcEEEEecCccHHHHHHH-HHhCcCceeecCCCHHHHHHHHHHHH
Confidence 3334444333222111111 12256679999999999998887765
No 189
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=96.39 E-value=0.05 Score=50.00 Aligned_cols=118 Identities=16% Similarity=0.250 Sum_probs=81.0
Q ss_pred ccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCC
Q 002879 573 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 652 (871)
Q Consensus 573 ~~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 652 (871)
...+.+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|......+ ...++..++..
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~---g~~~~~~l~~~-- 85 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLS---IFSLLDIVKEQ-- 85 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSC---HHHHHHHHTTS--
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhh--
Confidence 34678999999999999999999999999999999999999887652 3478888887654322 23455566552
Q ss_pred CCCceEEEEe-ccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 653 GFQSKLFLLA-NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 653 ~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.....++++. ....... .... ...++.||+....+...+.+.+.
T Consensus 86 ~~~~~ii~ls~~~~~~~~----~~~~-~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 86 TKQPSVLILTTGRHELIE----SSEH-NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SSCCEEEEEESCC--CCC----CSSS-CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCCEEEEECCCCCHHH----HHHH-HHheeeCCCCHHHHHHHHHHHHH
Confidence 1223444444 3222211 1222 55789999999999999887664
No 190
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=96.38 E-value=0.024 Score=53.40 Aligned_cols=121 Identities=12% Similarity=0.239 Sum_probs=82.8
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 574 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 574 ~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
.++.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++...
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMG---GEVFLEQVAKSYP- 78 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSC---HHHHHHHHHHHCT-
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC-
Confidence 4567999999999999999999999999999999999999888754 478999987654322 2334555555321
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...+++++...............+...++.||+....+...+..++.
T Consensus 79 -~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 79 -DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp -TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 23344443332221111111111256799999999999988877663
No 191
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=96.37 E-value=0.026 Score=50.62 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=79.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|......+ ...++..+++.......
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEIS---GLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSB---HHHHHHHHHHSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHcCccccCC
Confidence 4799999999999999999999999999999999998877653 468888887654322 23355566653322233
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++........... ...+...++.||+....+...+.+.+.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERI-REGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp CEEEEC------CHHHH-HHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cEEEEECCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 34444332221111111 112556799999999999999887764
No 192
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=96.36 E-value=0.023 Score=52.74 Aligned_cols=121 Identities=18% Similarity=0.280 Sum_probs=84.3
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcE--EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 652 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 652 (871)
...+++++|+++..+......|+..|.. +..+.+..+++..+.. ..++++++|......+ ...++..+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~---g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIAN---GFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGC---HHHHHHHHHSSST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhccc
Confidence 4578999999999999999999999987 8899999999988865 3478899987654322 2345566665433
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeecCC-chHHHHHHHHHHhc
Q 002879 653 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 701 (871)
Q Consensus 653 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~~~ 701 (871)
.....++++............ ...+...++.||+ ....+...+.+.+.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQC-MAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHH-HHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHH-HHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 333445555443332221111 1235678999999 99999998887764
No 193
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=96.35 E-value=0.047 Score=50.28 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=83.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.......
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMD---GWETLERIKTDPATRDI 78 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCC
Confidence 4799999999999999999999999999999999999887654 468899887664322 23455666654332233
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.++++...... .......+.+...++.||+....+...+...+..
T Consensus 79 ~ii~ls~~~~~-~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 79 PVLMLTAKPLT-PEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp CEEEEESSCCC-HHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCh-HHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 34444333221 1111122334568999999999999999888753
No 194
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=96.32 E-value=0.05 Score=50.21 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=80.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcC---C
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG---C 652 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~ 652 (871)
..+++++|+++..+......|+..|..+..+.+..+++..+... .++++++|......+ ...++..+++.. .
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~---g~~~~~~l~~~~~~~~ 84 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMD---GLEAVSEIRNYERTHN 84 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSC---HHHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHhhhhhcC
Confidence 35899999999999999999999999999999999999887653 478899987654432 233445555421 1
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 653 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 653 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.....++++......... ...+...++.||+....+...+...+.
T Consensus 85 ~~~~~ii~~s~~~~~~~~----~~~g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 85 TKRASIIAITADTIDDDR----PGAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp CCCCCCEEEESSCCSCCC----CCSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCceEEEEEeCccchhHH----HhCChhheEeCCCCHHHHHHHHHHHhC
Confidence 112233333332211111 133566899999999999999988774
No 195
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=96.31 E-value=0.022 Score=52.37 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=80.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCc-EEEEeCCHHHHHHHHhc---CCCcceEEEeeccccccCcchhHHHHHHhhhcCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 652 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 652 (871)
.+++++|+++..+......|+..|+ .+..+.+..+++..+.. ....++++++|..+...+ ...++..+++...
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~---G~~~~~~lr~~~~ 79 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVD---GLLSTKMIRRDLG 79 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSC---HHHHHHHHHHHSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC---hHHHHHHHHhhcC
Confidence 5799999999999999999999997 48889999999887654 124578999987764432 2334555654322
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 653 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 653 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
. ...+++++........... ...+...++.||+....+...+.+.+.
T Consensus 80 ~-~~~ii~lt~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 80 Y-TSPIVALTAFADDSNIKEC-LESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp C-CSCEEEEESCCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred C-CCCEEEEECCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 2 2334444332222111111 123566899999999999999988764
No 196
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=96.29 E-value=0.032 Score=50.28 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=81.5
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++.+++|......+ ...++..+++.......
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGS---GIQFIKHLRRESMTRDI 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEE---HHHHHHHHHTSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCC---HHHHHHHHHhCcccCCC
Confidence 479999999999999999999999999999999998876654 3578888887653322 23455666654322233
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++........... ...+...++.||+....+...+...+.
T Consensus 78 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 78 PVVMLTARGEEEDRVRG-LETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CEEEEEETTHHHHHHTT-CCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 44444433322221111 223566899999999999999887764
No 197
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=96.29 E-value=0.029 Score=51.54 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=79.3
Q ss_pred cccCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcC
Q 002879 572 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 651 (871)
Q Consensus 572 ~~~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 651 (871)
....+.+++++|+++..+......|+.+|+.+..+.+..+++..+... .+++++ ..+. ....++..+++.
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi------~~~~-~g~~~~~~l~~~- 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM------VSDK-NALSFVSRIKEK- 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE------ECST-THHHHHHHHHHH-
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE------EcCc-cHHHHHHHHHhc-
Confidence 345678999999999999999999999999999999999999887664 356665 1111 223455666655
Q ss_pred CCCCceEEEEeccCCccccCcCCCCCCCCceeecCC-chHHHHHHHHHHhc
Q 002879 652 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 701 (871)
Q Consensus 652 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~~~ 701 (871)
.....++++............ ...+...++.||+ ....+...+...+.
T Consensus 84 -~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 84 -HSSIVVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp -STTSEEEEEESSCCHHHHHHH-HHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred -CCCccEEEEeCCCCHHHHHHH-HHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 113344444433222111111 1235668999999 99999999887764
No 198
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=96.21 E-value=0.036 Score=50.90 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=82.4
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeecccc-ccCcchhHHHHHHhhhcCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGC 652 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~ 652 (871)
...+++++|+++..+......|+..|+.+. .+.+..+++..+... .++.+++|.... ..+ ...++..++..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~---g~~~~~~l~~~-- 80 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALD---GVETAARLAAG-- 80 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSC---HHHHHHHHHHH--
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCC---HHHHHHHHHhC--
Confidence 457899999999999999999999999999 599999999887653 478888887653 222 23345555554
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 653 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 653 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
....++++............ ...+...++.||+....+...+.+++.
T Consensus 81 -~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 -CNLPIIFITSSQDVETFQRA-KRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp -SCCCEEEEECCCCHHHHHHH-HTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCCHHHHHHH-HhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 23344444443322111111 123567899999999999999988764
No 199
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=96.19 E-value=0.096 Score=47.37 Aligned_cols=121 Identities=13% Similarity=0.186 Sum_probs=82.4
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
...+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|...... .....++..+++...
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~--~~g~~~~~~l~~~~~-- 78 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQP--PDGWQVARVAREIDP-- 78 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSS--SCHHHHHHHHHHHCT--
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCC--CCHHHHHHHHHhcCC--
Confidence 457899999999999999999999999999999999999887754 257888888765420 112334555655421
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCC
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 703 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~ 703 (871)
...+++++............. ...++.||+....+...+.+.+...
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~---~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 79 NMPIVYISGHAALEWASNGVP---DSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp TCCEEEEESSCCTTHHHHSCT---TCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCccHHHHHhhcC---CcceEeCCCCHHHHHHHHHHHHhcC
Confidence 334444443332221111111 1258999999999999999888643
No 200
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=96.19 E-value=0.083 Score=46.65 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=78.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+++..+++..+... .++.+++|......+ ...++..+++.. ...
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~--~~~ 74 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGIS---GLEVAGEIRKKK--KDA 74 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHHC--TTC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCC---HHHHHHHHHccC--CCC
Confidence 3789999999999999999999999999999999999887654 478888887654322 233455555543 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.+++++..... . ......+...++.||+....+...+.+.+
T Consensus 75 ~ii~~s~~~~~-~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 75 KIILLTAYSHY-R--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CEEEEESCGGG-G--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred eEEEEECCcch-H--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 34444332221 1 11122355689999999999988887653
No 201
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=96.16 E-value=0.022 Score=50.26 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=79.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
+.+++++|+++..+......|+.+|+++..+.+..+++..+... .++.+++|...... ....++..+++......
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~---~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQ---SCLLLLQHLREHQADPH 75 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCC---THHHHHHHHHHTCCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCC---CHHHHHHHHHhccccCC
Confidence 35799999999999999999999999999999999999887654 46888888655322 22345566665432223
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
..++++....... .....+...++.||+....+...+.+.+
T Consensus 76 ~~ii~~~~~~~~~----~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 76 PPLVLFLGEPPVD----PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCCEEEESSCCSS----HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CCEEEEeCCCCch----hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 3344444332221 1112245678999999999988887554
No 202
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=96.15 E-value=0.017 Score=53.88 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=83.9
Q ss_pred cccCCcEEEEeCCchhhhHHHHHHHHHhC-cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhc
Q 002879 572 SEFQGMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 650 (871)
Q Consensus 572 ~~~~g~~~l~vd~~~~~~~v~~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 650 (871)
....+.+++++|+++..+......|...| +.+..+.+..+++..+......++++++|..+... ....++..+++.
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~---~g~~~~~~l~~~ 92 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDT---AELAAIEKLSRL 92 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCH---HHHHHHHHHHHH
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCc---cHHHHHHHHHHh
Confidence 34567899999999999999999999999 99999999888876654321357888888765332 223345555554
Q ss_pred CCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 651 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 651 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
. ....++++............ ...+...++.||+....+...+.+++..
T Consensus 93 ~--~~~~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 93 H--PGLTCLLVTTDASSQTLLDA-MRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp C--TTCEEEEEESCCCHHHHHHH-HTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred C--CCCcEEEEeCCCCHHHHHHH-HHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3 12334444433222111111 1235567999999999999999888753
No 203
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=96.12 E-value=0.063 Score=49.41 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=79.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+.. +.+..+.+..+++..+... .++++++|......+. ..++..+++......
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ 76 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENS---PNLCLKLKRSKGLKN 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC---------CHHHHHHTSTTCTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcH---HHHHHHHHcCcccCC
Confidence 368999999999999999999988 9999999999999887654 4788999876543322 224455555432233
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++........... ....+...++.||+....+...+...+.
T Consensus 77 ~~ii~~s~~~~~~~~~~-~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 77 VPLILLFSSEHKEAIVN-GLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCEEEEECC----CTTT-TTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHH-HHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 44444444332222222 2233667899999999999999887764
No 204
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=96.09 E-value=0.034 Score=52.33 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.. .
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~ 85 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMD---GPTLLARIHQQY--P 85 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHHC--T
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCc---HHHHHHHHHhHC--C
Confidence 457899999999999999999999999999999999999988664 478899987764332 233455555532 1
Q ss_pred CceEEEEeccCCccccCcCCCCCC-CCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...++++............. ..+ ...++.||+....+...+...+.
T Consensus 86 ~~~ii~~s~~~~~~~~~~~~-~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 86 STTRILLTGDPDLKLIAKAI-NEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp TSEEEEECCCCCHHHHHHHH-HTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHH-hCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 23444444332222111111 124 66899999999999999887764
No 205
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=96.08 E-value=0.044 Score=51.32 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=83.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC-----CCcceEEEeeccccccCcchhHHHHHHhh
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLR 648 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 648 (871)
..+++++|+++..+......|+..|. .+..+.+..+++..+... ...++++++|..+...+ ...++..++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~---g~~l~~~l~ 84 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKD---GREVLAEIK 84 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSC---HHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCc---HHHHHHHHH
Confidence 46899999999999999999998886 888999999999887653 24579999987764332 234556666
Q ss_pred hcCCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 649 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 649 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+........+++++............ ..+...++.||+....+...++....
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVIASY-ELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 54322233444444433222111111 22566899999999999998887653
No 206
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.01 E-value=0.0031 Score=75.47 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCC
Q 002879 737 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 816 (871)
Q Consensus 737 ~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~ 816 (871)
.+.|...|++.||+|..+.++.+|+..++....+++|++|++|+ +.+++++||+.
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir~~---------------------- 73 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEISKM---------------------- 73 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHHHh----------------------
Confidence 34566899999999999999999999997666799999999996 78999999984
Q ss_pred CCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHH
Q 002879 817 NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 854 (871)
Q Consensus 817 ~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~ 854 (871)
+..+||++++.....++.....-.++++|+.+..+..+
T Consensus 74 ~~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (715)
T 3n75_A 74 NENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAE 111 (715)
T ss_dssp CTTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHH
T ss_pred CCCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHH
Confidence 35799999998855433322223578999999875443
No 207
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=96.01 E-value=0.015 Score=57.05 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=80.8
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 574 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 574 ~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
....+++++|+++..+......|+..|+.|..+.+..+++..+.. ..++++++|..+...+ ...++..+++...
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~~- 78 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDS---GLSLIAPLCDLQP- 78 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEE---SHHHHHHHHHHCT-
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCcc---HHHHHHHHHhcCC-
Confidence 346789999999999999999999999999999999999988865 3578999987764432 2334555555321
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
...+++++........... -..+...++.||+....+...+...+
T Consensus 79 -~~~ii~lt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 79 -DARILVLTGYASIATAVQA-VKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp -TCEEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred -CCCEEEEeCCCCHHHHHHH-HHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 2334444332222111111 12256689999999999888876544
No 208
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=96.01 E-value=0.041 Score=50.50 Aligned_cols=122 Identities=10% Similarity=0.076 Sum_probs=82.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccccc--CcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK--DTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|...... .......++..+++..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~-- 78 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY-- 78 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHC--
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC--
Confidence 36899999999999999999999999999999999999888764 37889988765410 0111233455555542
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
....+++++........... ...+...++.||+....+...+.+++..
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRG-IKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCHHHHHHH-HHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 12334444433222111111 1235678999999999999999988753
No 209
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=96.01 E-value=0.022 Score=52.43 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=82.7
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|....... .....++..+++.. ..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~-~~g~~~~~~l~~~~--~~ 80 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKK-DSGIELLETLVKRG--FH 80 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBT-THHHHHHHHHHHTT--CC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCC-ccHHHHHHHHHhCC--CC
Confidence 3689999999999999999999999999999999999877654 3588999987654310 12234555666543 22
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..+++++........... ...+...++.||+....+...+.++...
T Consensus 81 ~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRA-MRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCEEEEESSCCHHHHHHH-HHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 334444333222111111 1235668999999999999999888753
No 210
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.98 E-value=0.0042 Score=65.05 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=34.6
Q ss_pred EEEEEecCCCCChhhHhhhccc--------cc---ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTP--------FM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~p--------F~---q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
.|.|.|||+||+++++..-+.. |. +.+.......|-.|+|++-|-. .+-++.|.|...
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~----vadkV~V~Sk~~ 162 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL----VADKVIVYTKNN 162 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc----ccCEEEEEEecC
Confidence 5899999999999987543311 21 1101112345778999865432 234577777653
No 211
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=95.96 E-value=0.022 Score=51.69 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=80.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
..+++++|+++..+......|+..|+ .+..+++..+++..+... .++.+++|......+ ...++..+++.....
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~~~ 80 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMD---GLGLLQAVRANPATK 80 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSC---HHHHHHHHTTCTTST
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCC---HHHHHHHHhcCcccc
Confidence 35799999999999999999999999 888999999999887653 478888887654322 233555665542222
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...+++++........... ...+...++.||+....+...+...+.
T Consensus 81 ~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 81 KAAFIILTAQGDRALVQKA-AALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp TCEEEECCSCCCHHHHHHH-HHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 3344444332221111111 112556799999999999998887653
No 212
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=95.95 E-value=0.015 Score=53.47 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=80.2
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhC-cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
..+++++|+++..+......|+..| +.+..+.+..+++..+.. ..++++++|......+.. .++..+++...
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~-- 86 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGK---PGIVEARALWA-- 86 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGS---TTHHHHHGGGT--
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHH---HHHHHHHhhCC--
Confidence 4689999999999999999999999 999999999988876643 457889988776543322 23444554332
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...+++++........... ...+...++.||+....+...+.+.+.
T Consensus 87 ~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 87 TVPLIAVSDELTSEQTRVL-VRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp TCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCcEEEEeCCCCHHHHHHH-HHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 3334444333222111111 123566899999999999998887653
No 213
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=95.95 E-value=0.077 Score=47.81 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=80.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......++..|+.+..+.+..+++..+... .++.+++|......+ ...++..+++.. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMS---GVELLRNLGDLK--IN 75 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSC---HHHHHHHHHHTT--CC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCC---HHHHHHHHHhcC--CC
Confidence 46899999999999999999999999999999999998877653 468888887654322 233455555532 22
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..+++++........... ...+...++.||+....+...+.+.+.
T Consensus 76 ~~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEA-MKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CCEEEEECTTCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHH-HHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 334444333222111111 122566899999999999999988764
No 214
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=95.94 E-value=0.047 Score=50.38 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=82.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|. ... .....++..+++... .
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~---~~g~~~~~~l~~~~~--~ 75 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEG---EESLNLIRRIREEFP--D 75 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTT---HHHHHHHHHHHHHCT--T
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCC---CcHHHHHHHHHHHCC--C
Confidence 46899999999999999999999999999999999999888764 578888886 322 122334555555322 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..++++............ ...+...++.||+....+...+.+.+..
T Consensus 76 ~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINS-VKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp CEEEEEESCCCHHHHHHH-HHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHH-HHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 344444433222111111 1225567899999999999999988754
No 215
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=95.92 E-value=0.051 Score=48.40 Aligned_cols=116 Identities=12% Similarity=0.186 Sum_probs=78.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
+.+++++|+++..+......|+..|+. +..+.+..+++..+... .++.+++|......+ ...++..+++...
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~~-- 74 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMN---GIDAIKEIMKIDP-- 74 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGC---HHHHHHHHHHHCT--
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHhhCC--
Confidence 358999999999999999999999999 56889999999887653 468888887654322 2334555555421
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHH
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 699 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 699 (871)
...+++++........... ...+...++.||+....+...+.+.
T Consensus 75 ~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 75 NAKIIVCSAMGQQAMVIEA-IKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp TCCEEEEECTTCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHH-HHhCcceeEeCCCCHHHHHHHHHHH
Confidence 2334444433222111111 1235668999999999998888764
No 216
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.91 E-value=0.0056 Score=67.86 Aligned_cols=50 Identities=34% Similarity=0.561 Sum_probs=34.0
Q ss_pred EEEEEecCCCCChhhH--------hhhcccccccC---CCCCCCCCc-ccccHHHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEAQ--------SRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 525 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~--------~~iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv~~ 525 (871)
.|+|.|+|.|||.+.. +-+|..+.... ....+..+| .|.||+.+..+.+.
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~ 128 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 128 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCe
Confidence 4899999999999884 44777554321 111222344 89999999888753
No 217
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=95.90 E-value=0.0022 Score=66.48 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=36.0
Q ss_pred EEEEEecCCCCChhhHhhhccccccc----------CCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQV----------GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~----------~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
.|.|.|||+||+++++..-|...... +.......|-.|+||+-+-.+ .-++.|.|...
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~V----adkv~V~Sr~~ 175 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 175 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhcc----CCeEEEEEcCC
Confidence 58999999999999886555322110 001123456789999865322 23677777653
No 218
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=95.89 E-value=0.06 Score=47.96 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=78.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|......+ ...++..++.... ..
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~~--~~ 73 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDED---GLSLIRRWRSNDV--SL 73 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHTTC--CS
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCC---HHHHHHHHHhcCC--CC
Confidence 3689999999999999999999999999999999999887654 468888887654322 2334555554321 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.+++++........... ...+...++.||+....+...+.+.+
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 74 PILVLTARESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp CEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHH-HHcCccceEECCCCHHHHHHHHHHHH
Confidence 34444333222111111 12356689999999999998887765
No 219
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=95.84 E-value=0.064 Score=50.15 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=83.3
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcC
Q 002879 574 FQGMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 651 (871)
Q Consensus 574 ~~g~~~l~vd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 651 (871)
...++++++|+++..+......|...| ..+..+.+..+++..+... .++++++|......+ ...++..+++..
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~ 92 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE--SVDIAILDVEMPVKT---GLEVLEWIRSEK 92 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS--CCSEEEECSSCSSSC---HHHHHHHHHHTT
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc--CCCEEEEeCCCCCCc---HHHHHHHHHHhC
Confidence 345789999999999999999999988 7899999999999888654 478999987664322 233455555532
Q ss_pred CCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 652 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 652 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
....+++++........... ...+...++.||+....+...+.+.+.
T Consensus 93 --~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 93 --LETKVVVVTTFKRAGYFERA-VKAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp --CSCEEEEEESCCCHHHHHHH-HHTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred --CCCeEEEEeCCCCHHHHHHH-HHCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 23344444443332211111 123567899999999999999998875
No 220
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=95.83 E-value=0.048 Score=49.67 Aligned_cols=118 Identities=9% Similarity=0.184 Sum_probs=81.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
++++++|+++..+......|+..|+.+. .+++..+++..+... .++++++|......+ ...++..+++... .
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~--~ 74 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 74 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHTTC--C
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCC---hHHHHHHHHhcCC--C
Confidence 5799999999999999999999999997 888988888877653 478899887664322 2335555655422 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..+++++........... ...+...++.||+....+...+...+..
T Consensus 75 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHC-ADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEEEECC---CTHHHH-HHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCChHHHHHH-HHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 334444433322221111 1235668999999999999999988853
No 221
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=95.80 E-value=0.051 Score=48.82 Aligned_cols=117 Identities=12% Similarity=0.165 Sum_probs=80.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|......+ ...++..+++.. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~--~~~ 76 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMD---GIEILKRMKVID--ENI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCC---HHHHHHHHHHHC--TTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCC---HHHHHHHHHHhC--CCC
Confidence 4799999999999999999999999999999999999887653 468899887654322 233455555432 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++........... ...+...++.||+....+...+.+.+.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVIIMTAYGELDMIQES-KELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred CEEEEEccCchHHHHHH-HhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 44444333222111111 122556789999999999999887663
No 222
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=95.77 E-value=0.016 Score=66.82 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=30.3
Q ss_pred EEEEEecCCCCChhhHhhhcccccccCC------------CCCCCCCcccccHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYL 522 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~------------s~~~~~~GtGLGLsI~k~l 522 (871)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++=+-.+
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~V 133 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV 133 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhc
Confidence 5899999999999998776654322110 1122346779998655544
No 223
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=95.73 E-value=0.082 Score=48.20 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=79.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|......+ ...++..+++... ..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDME---GTELLEKAHKLRP--GM 76 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCc---hHHHHHHHHhhCC--CC
Confidence 5799999999999999999999999999999999999887653 468888887654322 2334455554321 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.+++++........... ...+...++.||+....+...+.+.+
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 77 KKIMVTGYASLENSVFS-LNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp EEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHH-HhccchhhccCCCCHHHHHHHHHHHH
Confidence 34444333222111111 12356789999999999998887765
No 224
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=95.72 E-value=0.095 Score=47.77 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=81.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|......+ ...++..+++... ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLD---GIEVCKQLRQQKL--MF 76 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC--CC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHcCCC--CC
Confidence 5899999999999999999999999999999999999877643 468888887654322 2345556655422 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.+++++........... ...+...++.||+....+...+...+..
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 77 PILMLTAKDEEFDKVLG-LELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp CEEEEECTTCCCCHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHH-HhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 34444333222111111 1235668999999999999999887753
No 225
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=95.67 E-value=0.058 Score=49.65 Aligned_cols=117 Identities=14% Similarity=0.211 Sum_probs=80.7
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|......+ ...++..+++.. .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~---~ 75 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGD---GWTLCKKIRNVT---T 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEE---HHHHHHHHHTTC---C
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHccCC---C
Confidence 35899999999999999999999999999999999999887654 468888887654322 234556666532 3
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++............ ...+...++.||+....+...+...+.
T Consensus 76 ~~ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 76 CPIVYMTYINEDQSILNA-LNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCEEEEESCCCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 334444332222111111 123566899999999999998887764
No 226
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=95.65 E-value=0.067 Score=47.85 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=78.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+++..+++..+... .++.+++|......+ ...++..+++. . ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~--~-~~ 75 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKN---GLLLARELREQ--A-NV 75 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSC---HHHHHHHHHHH--C-CC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHHhC--C-CC
Confidence 4799999999999999999999999999999999999887653 468888887654322 23345555554 1 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.++++............ ...+...++.||+....+...+...+
T Consensus 76 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 76 ALMFLTGRDNEVDKILG-LEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp EEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 34444332222111111 12255679999999999988887655
No 227
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=95.63 E-value=0.09 Score=46.89 Aligned_cols=115 Identities=12% Similarity=0.202 Sum_probs=77.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|......+ ...+...+++. ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~---~~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDEN---GLMLTRALRER---STV 74 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHTT---CCC
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCC---hHHHHHHHHhc---CCC
Confidence 4799999999999999999999999999999999988877653 468888887654322 23345556551 223
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.++++............ -..+...++.||+....+...+.+.+
T Consensus 75 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 75 GIILVTGRSDRIDRIVG-LEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCChhhHHHH-HHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 34444333222111111 12256689999999999988887665
No 228
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=95.62 E-value=0.2 Score=50.45 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=82.4
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
.++++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|......+ ...++..++... ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~--~~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLD---GVSVVTALRAMD--ND 79 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSC---HHHHHHHHHHTT--CC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 46899999999999999999999999999999999999887654 478889887654322 233455555532 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++........... .-..+...++.||+....+...+...+.
T Consensus 80 ~~ii~lt~~~~~~~~~~-~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCVLSARSSVDDRVA-GLEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCEEEEECCCTTTCCCT-TTTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHH-HHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33444433322222111 2223567899999999999999887764
No 229
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=95.58 E-value=0.033 Score=51.10 Aligned_cols=118 Identities=10% Similarity=0.054 Sum_probs=82.3
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+..|..+..+.+..+++..+... .++++++|......+ ...++..+++.. ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~ 79 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLG---GLEMLDRIKAGG--AK 79 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTT--CC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 46899999999999999999999999999999999999887654 478889887654322 233555565543 22
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++............ ...+...++.||+....+...+.+.+.
T Consensus 80 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 80 PYVIVISAFSEMKYFIKA-IELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CEEEECCCCCCHHHHHHH-HHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCcChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 334444333221111111 122566799999999999999988764
No 230
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=95.56 E-value=0.058 Score=50.74 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=80.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
+.+++++|+++..+......|...|+.+..+.+..+++..+.. ..++++++|......+ ...++..++... ..
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~---g~~~~~~l~~~~--~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMD---GLALFRKILALD--PD 75 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSC---HHHHHHHHHHHC--TT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 4689999999999999999999999999999999999987655 3478888887654322 233455555542 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++............ ...+...++.||+....+...+...+.
T Consensus 76 ~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQA-IQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp SCEEEEECGGGHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 334444333222111111 123567899999999999998887763
No 231
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=95.55 E-value=0.0081 Score=60.31 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=23.2
Q ss_pred EEEEEecCCCCChhhH--------hhh-cccccccC--C-CCCCCCCcccccHHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEAQ--------SRI-FTPFMQVG--P-SISRTHGGTGIGLSISKYLVG 524 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~--------~~i-F~pF~q~~--~-s~~~~~~GtGLGLsI~k~lv~ 524 (871)
.|+|.|+|.|||.+.. +.+ +.+....+ + ...-..|=-|.||+.+..+.+
T Consensus 50 ~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~ 110 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 110 (201)
T ss_dssp CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc
Confidence 3899999999999873 343 34432211 0 011122336889998877763
No 232
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.017 Score=67.92 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=27.7
Q ss_pred EEEEEecCCCCChhhHhhhcccccccC----------CCCCCCCCcccccHHHH
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVG----------PSISRTHGGTGIGLSIS 519 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~----------~s~~~~~~GtGLGLsI~ 519 (871)
.|+|.|||+||+++++..-|....+.+ .......|..|+|+.=|
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa 127 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL 127 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHH
Confidence 489999999999998876554322110 01112346678888544
No 233
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=95.47 E-value=0.18 Score=55.11 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=110.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+++++|+++..+......|+.. |+. +..+.+..+++..+... .++++++|..+...+ ...++..+++...
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~--~pDlVllDi~mp~~d---Glell~~l~~~~p-- 76 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF--NPDVLTLDVEMPRMD---GLDFLEKLMRLRP-- 76 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEECCCSSSC---HHHHHHHHHHSSC--
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc--CCCEEEEECCCCCCC---HHHHHHHHHhcCC--
Confidence 58999999999999999999986 998 67899999999887653 478899987765432 2334555655432
Q ss_pred CceEEEEeccCCccc-cCcCCCCCCCCceeecCCch---------HHHHHHHHHHhcCCCCCCCCCCCCCcchhhhcCCC
Q 002879 655 QSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLRS---------SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 724 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~~~---------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (871)
..++++........ ........+...++.||+.. ..+...+..+........ . ..+. ... ...
T Consensus 77 -~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~~~~~-~--~~~~-~~~--~~~ 149 (349)
T 1a2o_A 77 -MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAH-K--PMAA-PTT--LKA 149 (349)
T ss_dssp -CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCCGGGG-S--CCCC-CCC--CCC
T ss_pred -CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhhcccC-C--Cccc-cCC--CCC
Confidence 33344433222100 00011122566799999973 667777766654321110 0 0000 000 000
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCE-EEEEcCHHHHHHHhCC--CCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMP--PHQFDACFMDIQMPEMDGFEATKIIREM 794 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~-v~~a~~g~eAl~~l~~--~~~~DlilmDi~MP~mdG~e~~~~IR~~ 794 (871)
.++. ...... +-....|.+|+..+.. +..|+++++..+||..-.-.+.+++.+.
T Consensus 150 ~~~~----------------~~~~vv~iGaS~gG~~al~~~l~~lp~~~~~ivivqH~~~~~~~~~~~~l~~~ 206 (349)
T 1a2o_A 150 GPLL----------------SSEKLIAIGASTGGTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAERLNKL 206 (349)
T ss_dssp CCCC----------------CTTCEEEEEECTTHHHHHHHHHTTCCTTCCEEEEEECCCTTHHHHHHHHHHHH
T ss_pred cccC----------------CCceEEEEecCcccHHHHHHHHHhCCCCCCeEEEEecCCCCccHHHHHHHhcc
Confidence 0000 000111 1134578888887632 2346779999999998888888888764
No 234
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=95.39 E-value=0.1 Score=48.76 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=83.0
Q ss_pred ccCCcEEEEeCCchhhhHHHHHHHHHhCcE--EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhc
Q 002879 573 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 650 (871)
Q Consensus 573 ~~~g~~~l~vd~~~~~~~v~~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 650 (871)
...+.+++++|+++..+......|...|.. +..+.+..+++..+... .++++++|......+ ...++..+++.
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~ 86 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMD---GAQVAAAVRSY 86 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHT
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhc
Confidence 346789999999999999999999999954 66799999999887654 478899987664322 23355556554
Q ss_pred CCCCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 651 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 651 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
. ....++++............ ...+...++.||+....+...+.+.+..
T Consensus 87 ~--~~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 87 E--LPTRVLLISAHDEPAIVYQA-LQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp T--CSCEEEEEESCCCHHHHHHH-HHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred C--CCCeEEEEEccCCHHHHHHH-HHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2 22344444433322211111 1235678999999999999999988753
No 235
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=95.24 E-value=0.0054 Score=62.93 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=34.3
Q ss_pred EEEEEecCCCCChhhHhhhcc--------cccc---cCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFT--------PFMQ---VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 537 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~--------pF~q---~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~g 537 (871)
.|.|.|||+||+++++..-+. .|.. .+ ......|-.|+|++-|-.+ .-++.|.|..+
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~-~d~~~IGqFGvGfySaf~v----adkv~V~Sk~~ 154 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLV----AEKVVVITKHN 154 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhccc-CCcccccccCccccccccc----CCEEEEEEeeC
Confidence 589999999999998743221 1211 11 1123457789999876333 23566666543
No 236
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=95.24 E-value=0.12 Score=48.39 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=82.1
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHH-hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 652 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~-~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 652 (871)
...+++++|+++..+......|+. .|+.+. .+.+..+++..+... .++++++|......+ ...++..+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPG---GIEATRHIRQWDG 78 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSC---HHHHHHHHHHHCT
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC
Confidence 457899999999999999999998 899988 899999999887764 378899887654322 2345555655421
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 653 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 653 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...++++............ ...+...++.||+....+...+...+.
T Consensus 79 --~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 79 --AARILIFTMHQGSAFALKA-FEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp --TCCEEEEESCCSHHHHHHH-HHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred --CCeEEEEECCCCHHHHHHH-HHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 2334444433222111111 123566899999999999999988764
No 237
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=95.23 E-value=0.17 Score=50.82 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=81.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++..+......|...|+.+..+.+..+++..+... .++.+++|......+ ...++..+++.. ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~lr~~~--~~~ 75 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE--PFDVVILDIMLPVHD---GWEILKSMRESG--VNT 75 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHTT--CCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 5899999999999999999999999999999999999887653 478889887664322 233555665542 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++.......... .-..+...++.||+....+...+...+.
T Consensus 76 ~ii~ls~~~~~~~~~~-~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 76 PVLMLTALSDVEYRVK-GLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CEEEEESSCHHHHHHH-TCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHH-HHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 3444433222211111 1223667899999999999999988764
No 238
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=95.21 E-value=0.099 Score=46.31 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=77.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......++..|+.+..+.+..+++..+... .++.+++|......+ ...++..+++. . ..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~--~-~~ 73 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEID---GLEVAKTIRKT--S-SV 73 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHH--C-CC
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCC---HHHHHHHHHhC--C-CC
Confidence 3789999999999999999999999999999999999887653 468888887654322 23345555542 1 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.++++............ ...+...++.||+....+...+...+
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (120)
T 2a9o_A 74 PILMLSAKDSEFDKVIG-LELGADDYVTKPFSNRELQARVKALL 116 (120)
T ss_dssp CEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHH-HhCCHhheEeCCCCHHHHHHHHHHHH
Confidence 34444333222111111 11255679999999999998887765
No 239
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=95.20 E-value=0.079 Score=49.59 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=79.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+. |+.+..+.+..+++..+... .+++++++|......+ ...++..+++.. ..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~ 76 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS-DPFSVIMVDMRMPGME---GTEVIQKARLIS--PN 76 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS-CCCSEEEEESCCSSSC---HHHHHHHHHHHC--SS
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCc---HHHHHHHHHhcC--CC
Confidence 46899999999999998888875 99999999999999887654 2478999987664422 233455555432 22
Q ss_pred ceEEEEeccCCccccCcCCCCCC-CCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..+++++............. .+ ...++.||+....+...+...+.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~-~g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVN-EGQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHH-HTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHH-cCCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 33444433322211111111 23 56799999999999998887663
No 240
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.04 E-value=0.082 Score=58.21 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=81.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
+++++||+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+.. .++..+++... ..
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllDi~mP~~dG~---ell~~lr~~~~--~~ 73 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDGV---NFIDFIKENSP--DS 73 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB--CCSEEEEESEETTEETT---THHHHHHHHCT--TC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHH---HHHHHHHhhCC--CC
Confidence 3789999999999999999999999999999999999988654 47889998776544332 23444554321 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++...+....... -..+...++.||+....+...+.+++.
T Consensus 74 pvI~lT~~~~~~~~~~a-~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 74 VVIVITGHGSVDTAVKA-IKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp EEEEEECSSCCHHHHHH-HHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 34443332222111111 112566899999999999999988774
No 241
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=95.02 E-value=0.14 Score=50.77 Aligned_cols=116 Identities=9% Similarity=0.131 Sum_probs=79.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
.+++++|+++..+......|...|+.+. .+.+..+++..+... .++.+++|......+ ...++..++.... .
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~---g~~~~~~l~~~~~--~ 86 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRD---GIDAASEIASKRI--A 86 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC--S
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCC---hHHHHHHHHhcCC--C
Confidence 5899999999999999999999999988 899999999887653 478888887664322 2334555555432 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
+ ++++.......... .....+...++.||+....+...+..++.
T Consensus 87 p-ii~lt~~~~~~~~~-~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 87 P-IVVLTAFSQRDLVE-RARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp C-EEEEEEGGGHHHHH-TTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred C-EEEEecCCCHHHHH-HHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3 33333322221111 11223566899999999999998887663
No 242
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.89 E-value=0.1 Score=48.08 Aligned_cols=116 Identities=10% Similarity=0.101 Sum_probs=78.9
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.. ....
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~--~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMS---GEDVLDWINQND--IPTS 78 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSB---HHHHHHHHHHTT--CCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcC--CCCC
Confidence 799999999999999999999999999999999999887653 468888887654322 233455555432 1233
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
++++............ ...+...++.||+....+...+...+.
T Consensus 79 ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNL-IQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHH-HHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4444332222111111 122566899999999999988877663
No 243
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=94.86 E-value=0.069 Score=48.54 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=80.9
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+..+..+..+++..+++..+... ++++++|...... ....++..+++.. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~---~dlvi~D~~l~~~---~g~~~~~~l~~~~--~~ 74 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK---QDIIILDLMMPDM---DGIEVIRHLAEHK--SP 74 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCT---TEEEEEECCTTTT---HHHHHHHHHHHTT--CC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccC---CCEEEEeCCCCCC---CHHHHHHHHHhCC--CC
Confidence 46899999999999999999999999999999998887665443 8999998765432 2233455565533 22
Q ss_pred ceEEEEeccCCcc----ccCcCCCCCCCCceeecCCchHHHHHHHHHHhcCC
Q 002879 656 SKLFLLANSISSS----RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 703 (871)
Q Consensus 656 ~~~~ll~~~~~~~----~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~~ 703 (871)
..++++....... .........+...++.||+....+...+.+.....
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 75 ASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 3444443322210 11111122345578999999999999999887543
No 244
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=94.80 E-value=0.016 Score=68.12 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.2
Q ss_pred EEEEEecCCCCChhhHhhhccc
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTP 497 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~p 497 (871)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 4899999999999998766544
No 245
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=94.67 E-value=0.14 Score=50.63 Aligned_cols=118 Identities=10% Similarity=0.093 Sum_probs=80.0
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++.+++|......+ ...++..+++.. ..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~--~~ 76 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMS---GIELQEQLTAIS--DG 76 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSC---HHHHHHHHHHTT--CC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 3589999999999999999999999999999999999987654 3578899887664322 234455565542 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++............ -..+...++.||+....+...+...+.
T Consensus 77 ~~ii~ls~~~~~~~~~~a-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 77 IPIVFITAHGDIPMTVRA-MKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CCEEEEESCTTSCCCHHH-HHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHH-HHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 334444332221111111 112556799999999999888877653
No 246
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=94.65 E-value=0.29 Score=44.89 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=78.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++..+......|+.. |+. +..+.+..+++..+... .++++++|......+ ...++..+++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~-- 81 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLD---GVLLAQNISQFA-- 81 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSC---HHHHHHHHTTST--
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCC---HHHHHHHHHccC--
Confidence 478999999999999999999887 888 56889999999887664 378899887654322 233455555432
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..+.++++... .. ..... ...+...++.||+....+...+.+.+.
T Consensus 82 ~~~~ii~~s~~-~~-~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 82 HKPFIVFITAW-KE-HAVEA-FELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp TCCEEEEEESC-CT-THHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCceEEEEeCC-HH-HHHHH-HhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 22344444433 21 11111 123566899999999999999887764
No 247
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=94.62 E-value=0.12 Score=46.82 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=79.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+++++|+++..+......+... |+.+. .+.+..+++..+... .++.+++|......+ ...++..+++... .
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~~-~ 76 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLD---GLAVLERIRAGFE-H 76 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHHCS-S
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHhcCC-C
Confidence 57999999999999889999887 88865 789999999887653 468888887654322 2334555655311 2
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
...+++++........... ...+...++.||+....+...+.+.+..
T Consensus 77 ~~~ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 77 QPNVIMLTAFGQEDVTKKA-VELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp CCEEEEEEETTCHHHHHHH-HHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred CCcEEEEecCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 2344444433222111111 1125567899999999999999887753
No 248
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=94.57 E-value=0.022 Score=66.60 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=33.5
Q ss_pred EEEEEecCCCCChhhHhhhcccccccCC------------CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeC
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 536 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~------------s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~~ 536 (871)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++=+-.++ -++.|.|..
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va----dkV~V~Sr~ 143 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA----DKVTVRTRA 143 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE----EEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC----CeEEEEECC
Confidence 4899999999999997665543322110 01112355689987555543 245555544
No 249
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=94.54 E-value=0.062 Score=59.03 Aligned_cols=29 Identities=7% Similarity=0.090 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHhhccCC---CCeEEEEE
Q 002879 387 DPGRFRQIITNLMGNSIKFTE---KGHIFVTV 415 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v 415 (871)
|+..+..++.-||.|||...- ...|.|.+
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i 58 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEV 58 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEE
Confidence 677899999999999998532 23455544
No 250
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=94.50 E-value=0.18 Score=51.38 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=81.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.. ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~~~~~lr~~~---~~ 77 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMN---GIDVCRVLRADS---GV 77 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHTTC---CC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCC---CC
Confidence 5799999999999999999999999999999999999887653 478888887654322 233455565532 33
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.++++............ -..+...++.||+....+...+...+..
T Consensus 78 ~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 78 PIVMLTAKTDTVDVVLG-LESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp CEEEEEETTCCSCHHHH-HHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred cEEEEeCCCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 34444332222111111 1235678999999999999999988754
No 251
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=94.45 E-value=0.42 Score=41.17 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=77.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccc
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 804 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 804 (871)
+.||+|-.|-..--.++.++....|.++.... +.....-|+|||...+-. +.|+.
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~-------~~~e~~AdlIfCEYlLLP-------e~ifS----------- 67 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQ-------YKQELSADLVVCEYSLLP-------REIRS----------- 67 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESS-------CCCCTTEEEEEEEGGGSC-------TTCCC-----------
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccc-------cCCcccceeEEEeeecCh-------HHhcC-----------
Confidence 57899999988888888888877888887654 223456799999874311 11221
Q ss_pred cccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 805 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 805 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
++.....-+|++-.--+++...+.++.|+. |+..|++..-|-.+|+.|+.
T Consensus 68 ---------~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLr 117 (121)
T 3q7r_A 68 ---------PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLS 117 (121)
T ss_dssp ---------CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHH
T ss_pred ---------CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHh
Confidence 122233446666666788899999999999 99999999999999998875
No 252
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=94.42 E-value=0.11 Score=48.24 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=69.7
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 652 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 652 (871)
.+.+++++|+++..+...+..|+.. |+.+ ..+.+..+++..+.... .++++++|..+...+. ..++..+++...
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g---~~~~~~lr~~~~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDG---MEFLRHAKLKTR 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTT---CHHHHHHHHHCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCH---HHHHHHHHhcCC
Confidence 4568999999999999999999998 8885 58999999998876642 5889999977654332 234455554322
Q ss_pred CCCceEEEEecc-CCccccCcCCCCCCCCceeecCCchH
Q 002879 653 GFQSKLFLLANS-ISSSRANTSTDGVSIPSVIMKPLRSS 690 (871)
Q Consensus 653 ~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~kp~~~~ 690 (871)
..++++... .............+...++.||+...
T Consensus 88 ---~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~ 123 (145)
T 3kyj_B 88 ---AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTV 123 (145)
T ss_dssp ---CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC
T ss_pred ---CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHH
Confidence 333333321 11111101111235667899998743
No 253
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=94.38 E-value=0.17 Score=44.89 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=76.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|......+ ...++..+++. ...
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~---~~~ 73 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGD---GIEFIRDLRQW---SAV 73 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEE---HHHHHHHHHTT---CCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHhC---CCC
Confidence 3689999999999999999999999999999999988776543 468888887654322 23345555531 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.++++............ ...+...++.||+....+...+...+
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 74 PVIVLSARSEESDKIAA-LDAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp CEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHH-HhcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 34444333222111111 11255679999999999998887765
No 254
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=94.36 E-value=0.24 Score=46.20 Aligned_cols=120 Identities=11% Similarity=0.122 Sum_probs=77.6
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHh-Cc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRL-GI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~-g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++..+......|+.. |+ .+..+.+..+++..+... ..++++++|......+ ...++..+++...
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 77 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAE---AIDGLVRLKRFDP- 77 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC---------CHHHHHHHHHHCT-
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCc---hHHHHHHHHHhCC-
Confidence 358999999999999999999998 88 788999999999888752 3578888887654322 2334555555421
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
...+++++........... ...+...++.||+....+...+...+..
T Consensus 78 -~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 78 -SNAVALISGETDHELIRAA-LEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp -TSEEEEC-----CHHHHHH-HHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred -CCeEEEEeCCCCHHHHHHH-HHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 2344444332221111111 1235667899999999999999988754
No 255
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=94.24 E-value=0.18 Score=52.01 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=82.8
Q ss_pred CCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 575 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 575 ~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++. .
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~---G~~l~~~lr~~---~ 107 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFD---GGDVVQRLRKN---S 107 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHH---HHHHHHHHHTT---C
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHHcC---C
Confidence 456899999999999999999999999999999999999887654 478899987654322 23355566552 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
..+++++............ -..+...++.||+....+...+...+..
T Consensus 108 ~~~iI~lt~~~~~~~~~~a-~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 108 ALPIIVLTARDTVEEKVRL-LGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp CCCEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCHHHHHHH-HHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 2334444332221111111 1225668999999999999999988854
No 256
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=94.23 E-value=0.25 Score=44.86 Aligned_cols=117 Identities=9% Similarity=0.111 Sum_probs=79.0
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+++++|+++..+......|+..| ..+..+.+..+++..+... .++.+++|......+ ...++..+++.. .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~---g~~~~~~l~~~~--~ 76 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMT---GLEVLAEIRKKH--L 76 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTT--C
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHHHC--C
Confidence 479999999999999999999987 6678899999999887653 468888887654322 233455565531 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...+++++........... ...+...++.||+....+...+.+.+.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 77 NIKVIIVTTFKRPGYFEKA-VVNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp SCEEEEEESCCCHHHHHHH-HHTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 2344444333222111111 123566899999999999999988774
No 257
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=94.03 E-value=0.28 Score=46.61 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=77.1
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++..+......|+..| ..+..+.+..+++..+... .++++++|......+ ...++..+++...
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~l~~~lr~~~~- 98 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLN---GIEALKLIMKKAP- 98 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHHSC-
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC-
Confidence 4689999999999999999999886 3355789999999887654 478899987664322 2334555655432
Q ss_pred CCceEEEEeccCCccc-cCcCCCCCCCCceeecCCc---------hHHHHHHHHHHhcC
Q 002879 654 FQSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLR---------SSMLAASLQRAMGV 702 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~~---------~~~l~~~l~~~~~~ 702 (871)
..++++........ ........+...++.||+. ...+...+++.+..
T Consensus 99 --~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 99 --TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp --CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred --ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 23333333222111 1001112356789999998 56777777777754
No 258
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=93.75 E-value=0.5 Score=43.46 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=75.3
Q ss_pred cEEEEeCCchhhhHHHHHHHHH--hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQR--LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~--~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
.+++++|+++..+......|.. .|+.+. .+.+..+++..+.. ..++++++|......+ ...++..+++..
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~---g~~l~~~l~~~~-- 75 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMD---GIELVDNILKLY-- 75 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSC---HHHHHHHHHHHC--
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--
Confidence 4799999999988888888863 577766 88999999987754 3478899887654322 233455555432
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
....+++++......... .....+...++.||+....+...+.+.+.
T Consensus 76 ~~~~ii~ls~~~~~~~~~-~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 76 PDCSVIFMSGYSDKEYLK-AAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp TTCEEEEECCSTTTCCC-------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCcHHHHH-HHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 123444443332222111 11223567899999999999988877663
No 259
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=93.72 E-value=0.09 Score=51.72 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=74.4
Q ss_pred cCCcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 574 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 574 ~~g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
+.+.+++++|+++..+......|...|+.+..+.+..+++ ...++++++|..+...+ .. +...++...
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al------~~~~dlvl~D~~mp~~~---g~-l~~~~~~~~-- 77 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF------DVPVDVVFTSIFQNRHH---DE-IAALLAAGT-- 77 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC------SSCCSEEEEECCSSTHH---HH-HHHHHHHSC--
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC------CCCCCEEEEeCCCCccc---hH-HHHHHhccC--
Confidence 4567999999999999999999999999999887765544 24678999987763322 12 334444332
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
....+++++........... ...+...++.||+....+...+..++
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a-~~~ga~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 78 PRTTLVALVEYESPAVLSQI-IELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp TTCEEEEEECCCSHHHHHHH-HHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHHHHH-HHcCCCeeEecCcCHHHHHHHHHHHH
Confidence 23334444332222111111 12256679999999999988887665
No 260
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=93.71 E-value=0.35 Score=44.20 Aligned_cols=115 Identities=14% Similarity=0.216 Sum_probs=75.9
Q ss_pred EEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCce
Q 002879 578 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 657 (871)
Q Consensus 578 ~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (871)
+++++|+++..+......++.. +.+..+.+..+++..+... .++.+++|..+...+ ...++..+++... ...
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~---g~~~~~~l~~~~~--~~~ 74 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRT---GVDFLTEVRERWP--ETV 74 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSC---HHHHHHHHHHHCT--TSE
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHHhCC--CCc
Confidence 6899999999988888888875 8899999999999887654 478899887654322 2334555554321 233
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 658 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 658 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
+++++...............+...++.||+....+...+...+
T Consensus 75 ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 117 (139)
T 2jk1_A 75 RIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAA 117 (139)
T ss_dssp EEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHH
Confidence 4444333222111111111135679999999999998887765
No 261
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=93.67 E-value=0.21 Score=50.05 Aligned_cols=115 Identities=11% Similarity=0.144 Sum_probs=77.7
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++..+......|+..|+.+..+.+..+++..+... .+++++ .++.+ ...++..+++. ....
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi------lp~~~-g~~~~~~lr~~--~~~~ 69 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM------VSDKN-ALSFVSRIKEK--HSSI 69 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE------ECCTT-HHHHHHHHHHH--CTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE------eCCCC-HHHHHHHHHhC--CCCC
Confidence 3689999999999999999999999999999999999887654 456666 12222 23455666655 2133
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCC-chHHHHHHHHHHhcCC
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMGVG 703 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~~~~~ 703 (871)
.++++............ ...+...++.||+ ....+...+...+...
T Consensus 70 ~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred cEEEEECCCCHHHHHHH-HHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 44444333222111111 1225668999999 9999999999887543
No 262
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.52 E-value=0.32 Score=53.85 Aligned_cols=116 Identities=11% Similarity=0.178 Sum_probs=78.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
+++++||+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++... ..
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllD~~mp~~d---G~ell~~lr~~~~--~~ 73 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVN---GLEILKWIKERSP--ET 73 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhhCC--CC
Confidence 3689999999999999999999999999999999999887653 478999987664322 2334555554321 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHh
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 700 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~ 700 (871)
.+++++...+....... -..+...++.||+....+...+.+++
T Consensus 74 pvIvlT~~~~~~~~~~a-~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 74 EVIVITGHGTIKTAVEA-MKMGAYDFLTKPCMLEEIELTINKAI 116 (387)
T ss_dssp EEEEEEETTCHHHHHHH-HTTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHH-HhcCceEEecCCCCHHHHHHHHHHHH
Confidence 33333332221111111 12256689999999998888776654
No 263
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=93.36 E-value=0.22 Score=50.21 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=80.8
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|......+ ...++..+++. . ..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~--~-~~ 76 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMS---GTDVCKQLRAR--S-SV 76 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHH--C-SC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCC---HHHHHHHHHcC--C-CC
Confidence 5799999999999999999999999999999999999887653 478888887654322 23345556553 1 23
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.++++............ -..+...++.||+....+...+...+..
T Consensus 77 ~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 77 PVIMVTARDSEIDKVVG-LELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp SEEEEECCHHHHHHHHH-HHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 34444332221111111 1124567899999999999999988854
No 264
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=93.16 E-value=0.17 Score=44.90 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=76.1
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
.+++++|+++..+......|...|+.+..+.+..+++..+... .++.+++|......+. ..++..+++... ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g---~~~~~~l~~~~~--~~ 76 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDG---LALLKQIKQRHP--ML 76 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHH---CSTHHHHHHHCT--TS
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCH---HHHHHHHHhhCC--CC
Confidence 4689999999999999999999999999999999998877543 4688888866533221 112344443321 12
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
.+++++......... ..-..+...++.||+....+...+.+.+.
T Consensus 77 ~ii~~s~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 77 PVIIMTAHSDLDAAV-SAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp CCCCBCCSTTSTTTT-SSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHH-HHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 233332222221111 12223566899999999999998887653
No 265
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=92.93 E-value=0.28 Score=49.06 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=78.9
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCCc
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 656 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (871)
++++++|+++..+......|+..| .+..+.+..+++..+ ..++.+++|......+ ...++..+++.. ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~---g~~~~~~lr~~~--~~~ 72 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYS---GYEICRMIKETR--PET 72 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSB---HHHHHHHHHHHC--TTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 479999999999999999999999 899999999988765 4678999987664322 233455555543 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 657 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 657 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
.++++............ -..+...++.||+....+...+...+..
T Consensus 73 ~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 73 WVILLTLLSDDESVLKG-FEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 34444332221111111 1225667999999999999999888753
No 266
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=92.83 E-value=0.48 Score=47.08 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=80.2
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC-cEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLG-IQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g-~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
.+++++|+++..+......|+..| +.+ ..+.+..+++..+... .++++++|..+...+ ...++..+++.. .
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~--~ 78 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMN---GLETLDKLREKS--L 78 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSC---HHHHHHHHHHSC--C
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHHhC--C
Confidence 689999999999999999999874 887 7899999999887653 478899987664322 234555665542 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhcC
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 702 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~~ 702 (871)
...++++............ ...+...++.||+....+...+...+..
T Consensus 79 ~~~ii~ls~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 79 SGRIVVFSVSNHEEDVVTA-LKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp CSEEEEEECCCCHHHHHHH-HHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 2334444332222111111 1235668999999999999999888753
No 267
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=92.53 E-value=0.12 Score=52.65 Aligned_cols=49 Identities=29% Similarity=0.452 Sum_probs=29.5
Q ss_pred EEEEEecCCCCChhh-------Hhhhccccccc---CC-CCCCCCCcccccHHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEA-------QSRIFTPFMQV---GP-SISRTHGGTGIGLSISKYLVG 524 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~-------~~~iF~pF~q~---~~-s~~~~~~GtGLGLsI~k~lv~ 524 (871)
.|+|.|+|.|||.+. .+-+|...... +. +.....|=.|.|++.+..|.+
T Consensus 73 ~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~ 132 (226)
T 4emv_A 73 SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSS 132 (226)
T ss_dssp CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEE
T ss_pred eEEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhccc
Confidence 389999999999997 66666432211 11 111122337899998887764
No 268
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=92.34 E-value=0.15 Score=51.66 Aligned_cols=49 Identities=31% Similarity=0.466 Sum_probs=27.8
Q ss_pred EEEEecCCCCChhhH--------hhhccccccc---CCCCCCCC-CcccccHHHHHHHHHH
Q 002879 477 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTH-GGTGIGLSISKYLVGR 525 (871)
Q Consensus 477 i~V~DtG~GI~~e~~--------~~iF~pF~q~---~~s~~~~~-~GtGLGLsI~k~lv~~ 525 (871)
|+|+|+|.|||.+.. +-+|...... +....... |=.|.||+.+..|.+.
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~ 129 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 129 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccc
Confidence 899999999999864 3455322111 11111122 3378999988877643
No 269
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=92.20 E-value=0.26 Score=54.43 Aligned_cols=116 Identities=15% Similarity=0.233 Sum_probs=74.5
Q ss_pred CcEEEEeCCchhhhHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
..++|+||+++..+......|++.|+.|..+.+..+++..+... .++++++|..+...+ ...++..+++... .
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~---G~~~~~~lr~~~~--~ 77 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQID---GLELIRRIRQTAS--E 77 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSC---THHHHHHHHHTTC--C
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCC---HHHHHHHHHhhCC--C
Confidence 36899999999999999999999999999999999999888654 478999987765433 2334555555321 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCC-chHHHHHHHHHH
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRA 699 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~ 699 (871)
..++++ ++..........-..+...++.||+ ....+...+.+.
T Consensus 78 ~pii~l-t~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~ 121 (394)
T 3eq2_A 78 TPIIVL-SGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRA 121 (394)
T ss_dssp CCEEEC----CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHH
T ss_pred CcEEEE-EcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHH
Confidence 223333 2222111111111124567899999 466665554443
No 270
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=92.03 E-value=0.52 Score=52.23 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=79.4
Q ss_pred cEEEEeCCchhhhHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
.++++||+++..+......|+. .|..+..+.+..+++..+... ..++++++|..+...++ ..++..++... .
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG---~ell~~l~~~~---~ 76 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDG---LAFLRHASLSG---K 76 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCH---HHHHHHHHHHT---C
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---C
Confidence 5899999999999999999988 588999999999999887652 35799999987754332 23445555432 2
Q ss_pred ceEEEEeccCCcc-----ccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 656 SKLFLLANSISSS-----RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 656 ~~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...+++.++.... ......-..+...++.||+....+...+.+.+.
T Consensus 77 ~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~ 127 (400)
T 3sy8_A 77 VHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNA 127 (400)
T ss_dssp EEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHH
Confidence 2233333333222 010111223455789999999999988887654
No 271
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=91.01 E-value=1.1 Score=45.87 Aligned_cols=82 Identities=21% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHHHHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHhhhccccccccccccchhhh
Q 002879 740 AAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIRRGEVSIEAY 812 (871)
Q Consensus 740 l~~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 812 (871)
..+.|.+.|+.|. |+.|...|-.+. .-.+++| |.+-.|...| +++++.|++.
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~--~~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~------------------ 185 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLA--EIGCIAV-MPLAGLIGSGLGICNPYNLRIILEE------------------ 185 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHH--HSCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH------------------
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHH--HhCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc------------------
Confidence 4566777899977 777777776654 2457777 7777664333 7788888862
Q ss_pred ccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 813 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 813 ~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+|||+=-+-...++...|++.|+|+.+.
T Consensus 186 -----~~vPVI~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 186 -----AKVPVLVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp -----CSSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred -----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 358999877778899999999999999874
No 272
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=90.05 E-value=0.35 Score=48.14 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHhhccC---CCCeEEEEE
Q 002879 387 DPGRFRQIITNLMGNSIKFT---EKGHIFVTV 415 (871)
Q Consensus 387 D~~rl~qIl~NLl~NAiKfT---~~G~I~v~v 415 (871)
++..+..++.-||.||+... ....|.|.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i 59 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI 59 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE
Confidence 56778888888888888752 234666655
No 273
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=89.77 E-value=2.8 Score=39.99 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=78.0
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCC-C-HHHHHHHHHhh
Q 002879 724 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM-D-GFEATKIIREM 794 (871)
Q Consensus 724 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~m-d-G~e~~~~IR~~ 794 (871)
.++||+. |-+..-..++..+|+..||+|... ...++.++.+. ...+|+|.+-..|... . --++.+.+|+.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~-~~~~diV~lS~~~~~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV-QEDVDVIGVSILNGAHLHLMKRLMAKLREL 96 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHH-HTTCSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-hcCCCEEEEEeechhhHHHHHHHHHHHHhc
Confidence 3589888 889999999999999999999853 35566667664 4679999998877531 1 12233444431
Q ss_pred hccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 795 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 795 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
...++||++ -+....++...+.+.|+|++...=-+..+....+.+++
T Consensus 97 ---------------------g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 97 ---------------------GADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp ---------------------TCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred ---------------------CCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHH
Confidence 112466554 45556666667889999986654445555555555543
No 274
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=89.70 E-value=0.43 Score=53.06 Aligned_cols=66 Identities=21% Similarity=0.505 Sum_probs=38.4
Q ss_pred EEEEEecCCCCChhhHhh--------hccccccc---CCCCCCCCCc-ccccHHHHHHHHHHcCCEEEEEEeC-CCeEEE
Q 002879 476 IVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKGEIGFVSIP-NIGSTF 542 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~--------iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~~gG~I~v~S~~-g~Gs~F 542 (871)
.|+|+|+|.|||.+..+. ||....-. +....+..|| .|.|.+.|..|-+. +.++... ..|-.+
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~----l~V~v~r~rdGk~y 174 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE----FILETADLNVGQKY 174 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE----EEEEEEETTTTEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccce----EEEEEEECCCCcEE
Confidence 489999999999886443 56443221 1111222333 79999988877654 3444442 234444
Q ss_pred EEE
Q 002879 543 TFT 545 (871)
Q Consensus 543 ~~~ 545 (871)
...
T Consensus 175 ~q~ 177 (418)
T 1pvg_A 175 VQK 177 (418)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 275
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=89.69 E-value=0.37 Score=48.56 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=77.6
Q ss_pred cEEEEeCCchhhhHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 654 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (871)
++++++|+++..+......|...| +. +..+.+..+++..+... .++++++|..+...+ ...++..+++.. .
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~--~ 74 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGN---GIELCRDLLSRM--P 74 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEE---HHHHHHHHHHHC--T
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCC---HHHHHHHHHHhC--C
Confidence 479999999999999999999887 88 45799999999887653 478888887654322 233455555532 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 655 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 655 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
..++++++........... ...+...++.||+....+...+...+.
T Consensus 75 ~~~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 75 DLRCLILTSYTSDEAMLDA-ILAGASGYVVKDIKGMELARAVKDVGA 120 (225)
T ss_dssp TCEEEEGGGSSSHHHHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 2334433332221111111 122556789999999999999887764
No 276
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=89.49 E-value=0.47 Score=52.47 Aligned_cols=49 Identities=22% Similarity=0.444 Sum_probs=30.3
Q ss_pred EEEEEecCCCCChhh--------Hhhhccccccc---CC-CCCCCCCcccccHHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEA--------QSRIFTPFMQV---GP-SISRTHGGTGIGLSISKYLVG 524 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~---~~-s~~~~~~GtGLGLsI~k~lv~ 524 (871)
.|+|.|+|.|||.+. .+-+|....-. +. ...-..|=.|.||+.+..+-+
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~ 147 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 147 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEecc
Confidence 489999999999987 44466532211 11 111122337999998877643
No 277
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=89.36 E-value=1.8 Score=43.22 Aligned_cols=120 Identities=8% Similarity=0.098 Sum_probs=74.4
Q ss_pred CcEEEEeCCchhhhHHHHHHHHH-hCcEEEE-eCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCC
Q 002879 576 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEV-VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 653 (871)
Q Consensus 576 g~~~l~vd~~~~~~~v~~~~l~~-~g~~v~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 653 (871)
..+++++|+++..+......|+. .|+.+.. +.+..+++.... ....++++++|..+...+ ...++..+++.. .
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~-~~~~~dlvllD~~mp~~~---G~~~~~~lr~~~-~ 81 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP-ESRSIQMLVIDYSRISDD---VLTDYSSFKHIS-C 81 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS-GGGGCCEEEEEGGGCCHH---HHHHHHHHHHHH-C
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh-hccCCCEEEEeCCCCCCC---HHHHHHHHHHhh-C
Confidence 36899999999999999999984 6888855 344444443211 234688999997664422 233455555521 1
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHHHhc
Q 002879 654 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 701 (871)
Q Consensus 654 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~~~ 701 (871)
...+++++............ ...+...++.||+....+...+...+.
T Consensus 82 ~~~~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 82 PDAKEVIINCPQDIEHKLLF-KWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp TTCEEEEEEECTTCCHHHHT-TSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCcchhHHHHH-HHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 12334444332222211111 223566899999999999999988875
No 278
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=88.79 E-value=0.76 Score=49.67 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=75.5
Q ss_pred cEEEEeCCchhhhHHHHHHHH-HhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHhhhcCCCCC
Q 002879 577 MKALVVDPRPIRAKVSRYHIQ-RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 655 (871)
Q Consensus 577 ~~~l~vd~~~~~~~v~~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (871)
.++++||+++..+......|. ..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++.......
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~---G~~~~~~l~~~~~~~~ 93 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVD---GLTLLAAYRGNPATRD 93 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSB---HHHHHHHHTTSTTTTT
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHhcCcccCC
Confidence 469999999998888888886 4699999999999999887653 468888887664332 2345566665432223
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeecCCchHHHHHHHHH
Q 002879 656 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 698 (871)
Q Consensus 656 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 698 (871)
.+++++............ -..+...++.||+....+...+..
T Consensus 94 ~~ii~~s~~~~~~~~~~a-~~~Ga~~~l~Kp~~~~~l~~~v~~ 135 (358)
T 3bre_A 94 IPIIVLSTKEEPTVKSAA-FAAGANDYLVKLPDAIELVARIRY 135 (358)
T ss_dssp SCEEEEESSCCHHHHHHH-HHTTCSEEEESCCCHHHHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHH-HhcChheEeeccCCHHHHHHHHHH
Confidence 334444332222111111 123566899999998877766543
No 279
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=86.34 E-value=0.36 Score=49.57 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=35.7
Q ss_pred EEEEEecCCCCChhhHhhhccc--------cc---ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEe
Q 002879 476 IVSVEDTGQGIPLEAQSRIFTP--------FM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 535 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~~~~iF~p--------F~---q~~~s~~~~~~GtGLGLsI~k~lv~~~gG~I~v~S~ 535 (871)
.|+|.|||+||+++++..-+-. |. +.+.......|-.|+|++-|-. ..-++.|.|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm----VAdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL----VSNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG----TEEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec----cCCEEEEEEc
Confidence 5899999999999998875532 21 1111112234678999986532 3355677766
No 280
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=83.60 E-value=0.97 Score=49.96 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=25.4
Q ss_pred EEEEecCCCCChhhH--------hhhccccccc---CCCCCCCCCc-ccccHHHHHHHHHH
Q 002879 477 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 525 (871)
Q Consensus 477 i~V~DtG~GI~~e~~--------~~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~ 525 (871)
|+|.|+|.|||.+.. +-+|...... +.......+| -|.|++.|..|-+.
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 899999999999874 3455332211 1111122233 79999998887644
No 281
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=80.76 E-value=5.7 Score=40.82 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=59.0
Q ss_pred HHHHHHHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHhhhccccccccccccchhhh
Q 002879 740 AAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIRRGEVSIEAY 812 (871)
Q Consensus 740 l~~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 812 (871)
..+.|.+.|+.|. |..|...|-.+. .-.+|+| |.+-.|...| .+.++.|++.
T Consensus 116 aa~~L~k~Gf~Vlpy~~~D~~~ak~l~--~~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~------------------ 174 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMGPDLVLAKRLA--ALGTATV-MPLAAPIGSGWGVRTRALLELFARE------------------ 174 (268)
T ss_dssp HHHHHHHTTCEECCEECSCHHHHHHHH--HHTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT------------------
T ss_pred HHHHHHHCCCEEeeccCCCHHHHHHHH--hcCCCEE-EecCccCcCCcccCCHHHHHHHHHh------------------
Confidence 4556667899976 666776554443 2346766 8877775555 4557777752
Q ss_pred ccCCCCC-ccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 813 ENVSNFH-VPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 813 ~~~~~~~-~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
... +|||+=-+-...++...+++.|+|+.+.
T Consensus 175 ----~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 175 ----KASLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp ----TTTSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred ----cCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 124 8999877778889999999999999874
No 282
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=80.68 E-value=9.3 Score=38.64 Aligned_cols=88 Identities=7% Similarity=0.014 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC------CCCCCHHHHHHHHHhhhccccccccccc
Q 002879 734 NVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ------MPEMDGFEATKIIREMEHNFNNRIRRGE 806 (871)
Q Consensus 734 ~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~------MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 806 (871)
|....-+...+++.|..+. .+.+.++|..... ..+|+|..-.. .+...++++++++++
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~--~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~------------- 179 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQ--KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSH------------- 179 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHT-------------
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHh--CCCCEEEecCccCCCCCcCCCCCHHHHHHHHH-------------
Confidence 3334445555567787655 4677788877653 45899863221 234456888888875
Q ss_pred cchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 807 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 807 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
. ++|||+-.+-.+.++..+++++|+|+++.
T Consensus 180 ----------~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 180 ----------A-GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp ----------T-TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ----------c-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1 58999999888999999999999999975
No 283
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=72.49 E-value=24 Score=36.24 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=72.3
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhh
Q 002879 724 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREM 794 (871)
Q Consensus 724 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~ 794 (871)
+++||++ |-+..-..++..+|+..||+|... ...++.++.+. .+.+|+|.+-..|+. ++. -++.+.+|+.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~-~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQ-KEKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHH-HHCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEEeeccCCHHHHHHHHHHHHhc
Confidence 4588888 777888999999999999998643 34455555553 467999999987764 333 2344555542
Q ss_pred hccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhCC
Q 002879 795 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 864 (871)
Q Consensus 795 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~~ 864 (871)
...+||++--+...++. +-+.|+|.|..-+ .+....+.+++.
T Consensus 202 ----------------------~~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~~ 243 (258)
T 2i2x_B 202 ----------------------GIKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAIIA 243 (258)
T ss_dssp ----------------------TCCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHHT
T ss_pred ----------------------CCCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHHc
Confidence 22477776554444332 3478998887655 344444444443
No 284
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=70.69 E-value=21 Score=36.02 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC------CCCCCHHHHHHHHHhhhccccccccccc
Q 002879 734 NVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ------MPEMDGFEATKIIREMEHNFNNRIRRGE 806 (871)
Q Consensus 734 ~~n~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~------MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 806 (871)
|....-+...+++.|..+. .+.+.++|..... ..+|+|..-.. .+...++++++++++
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~--~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~------------- 179 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQR--LGADIIGTTMSGYTTPDTPEEPDLPLVKALHD------------- 179 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH--TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh--CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHh-------------
Confidence 3334445555567787655 4677788777653 45898853221 123446888888875
Q ss_pred cchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 807 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 807 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
. ++|||+-.+-.+.++..+++++|+|+++.
T Consensus 180 ----------~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 180 ----------A-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp ----------T-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ----------c-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1 58999998888899999999999999974
No 285
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=70.40 E-value=20 Score=32.95 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=69.9
Q ss_pred eCCHHHHHHHHHHHHHcCCEEEE---EcCHHHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHhhhcccccccccc
Q 002879 731 DDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREMEHNFNNRIRRG 805 (871)
Q Consensus 731 dDn~~n~~~l~~~L~~~g~~v~~---a~~g~eAl~~l~~~~~~DlilmDi~MP~md--G~e~~~~IR~~~~~~~~~~~~g 805 (871)
|-+..-..++..+|+..||+|.. ....++.++... .+.+|+|.+-..|..-. --++.+.+|+.
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~-~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~----------- 81 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAI-ETKADAILVSSLYGQGEIDCKGLRQKCDEA----------- 81 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHH-HHTCSEEEEEECSSTHHHHHTTHHHHHHHT-----------
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-hcCCCEEEEEecCcCcHHHHHHHHHHHHhc-----------
Confidence 44556678899999999999983 456777777774 46799999988774211 11234444432
Q ss_pred ccchhhhccCCCCCccEEEEccCCC-----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 806 EVSIEAYENVSNFHVPILAMTADVI-----QATYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 806 ~~~~~~~~~~~~~~~pIIalTa~~~-----~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
...+++|++=-+-.. .+....+.++|+|.|..---+..+....+.+.
T Consensus 82 ----------g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 82 ----------GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp ----------TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred ----------CCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 112466654332211 12245688999999987666777776666543
No 286
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=69.43 E-value=9.3 Score=45.93 Aligned_cols=111 Identities=9% Similarity=0.021 Sum_probs=69.7
Q ss_pred cEEEEeCCch-hh-------hHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCc-chhHHHHHHh
Q 002879 577 MKALVVDPRP-IR-------AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT-SVSTLFVNNL 647 (871)
Q Consensus 577 ~~~l~vd~~~-~~-------~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~ 647 (871)
+++|+||++. .. .......|++.|++|..+.+..+++..+... ..++.+++|..+...+. .....++..+
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 4789999998 66 7788889999999999999999999887753 23788888876532111 1122356677
Q ss_pred hhcCCCCCceEEEEeccC-CccccCcCCCCCCCCceeecCCchHH
Q 002879 648 RKLGCGFQSKLFLLANSI-SSSRANTSTDGVSIPSVIMKPLRSSM 691 (871)
Q Consensus 648 ~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~kp~~~~~ 691 (871)
++... ..|.+++.+.+. ....... -..+...++.||.....
T Consensus 80 R~~~~-~iPIi~lTa~~~~~~d~~~~--l~~gaddyi~kpf~~~e 121 (755)
T 2vyc_A 80 HERQQ-NVPVFLLGDREKALAAMDRD--LLELVDEFAWILEDTAD 121 (755)
T ss_dssp HHHST-TCCEEEEECHHHHHHTCSHH--HHHHCSEEEETTTSCHH
T ss_pred HHhCC-CCCEEEEecCCcchhhccHh--HhhcCCceEeCCCCCHH
Confidence 76532 123333332211 1111000 11245678999997776
No 287
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=66.85 E-value=32 Score=33.48 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=50.8
Q ss_pred ChhchHHHHHHHhcCCceeeccccccccCCceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecchHHHHHHHHHHh
Q 002879 86 GKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 163 (871)
Q Consensus 86 ~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l~~~~l~~~ 163 (871)
+...|+...+|+.+|+.+++.|+.-..++.+.+.+..|++..+. .+.|++++.++++.|.+. +..+
T Consensus 94 ~~~~r~~f~~a~~~~~~~is~~~~~~~~g~~~i~ia~pi~~~~g-----------~~~Gvl~~~i~l~~l~~~-~~~~ 159 (217)
T 4dah_A 94 NLADRSFFIKAKETKKTVISDSYSSRITGQPIFTICVPVLDSKR-----------NVTDYLVAAIQIDYLKNL-INLL 159 (217)
T ss_dssp BCTTSHHHHHHHHHCSCEECCCEECTTTCSEEEEEEEEEECTTS-----------CEEEEEEEEEEHHHHHHH-HHHH
T ss_pred CcchhHHHHHHHhcCCcEEeceEEcCCCCCEEEEEEEEEECCCC-----------CEEEEEEEEEcHHHHHHH-HHhc
Confidence 34567889999999999999998755567788899999997321 246999999999987654 4444
No 288
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=65.86 E-value=8.6 Score=48.26 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=31.8
Q ss_pred EEEEEecCCCCChhh--------HhhhcccccccC---CCCCCCCCc-ccccHHHHHHHHHH
Q 002879 476 IVSVEDTGQGIPLEA--------QSRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 525 (871)
Q Consensus 476 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv~~ 525 (871)
.|+|.|+|.|||-+. .+-||....... ....+..|| .|.|.+.|..|-+.
T Consensus 94 sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 94 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCc
Confidence 389999999999653 344565543321 122223344 69999999887653
No 289
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=64.87 E-value=12 Score=38.12 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=25.5
Q ss_pred CccEEEEccCCC------HHHHHHHHHcCCCEEEeCCCCH
Q 002879 819 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEA 852 (871)
Q Consensus 819 ~~pIIalTa~~~------~~~~~~~~~~G~d~yl~KP~~~ 852 (871)
.+||++++.... .+..+.|.++|+|..+.-....
T Consensus 80 ~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~ 119 (248)
T 1geq_A 80 STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPV 119 (248)
T ss_dssp CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCG
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCCh
Confidence 578998884222 5788889999999999864444
No 290
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=63.11 E-value=31 Score=34.04 Aligned_cols=102 Identities=20% Similarity=0.122 Sum_probs=66.3
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhh
Q 002879 724 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREM 794 (871)
Q Consensus 724 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~ 794 (871)
+.+||++ |-+..-..++..+|+..||+|.... ..++-++.+. ...+|+|.+-..|+. ++. -++.+.+|+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 166 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK-KYQPDIVGMSALLTTTMMNMKSTIDALIAA 166 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH-HHCCSEEEEECCSGGGTHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHhc
Confidence 3578888 7788889999999999999998643 3444455553 457999999987764 222 2334455542
Q ss_pred hccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCC
Q 002879 795 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 849 (871)
Q Consensus 795 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP 849 (871)
. ..+++||++--+...++ .+.+.|+|.|..-.
T Consensus 167 ~--------------------~~~~~~v~vGG~~~~~~---~~~~~gad~~~~da 198 (210)
T 1y80_A 167 G--------------------LRDRVKVIVGGAPLSQD---FADEIGADGYAPDA 198 (210)
T ss_dssp T--------------------CGGGCEEEEESTTCCHH---HHHHHTCSEECSSH
T ss_pred C--------------------CCCCCeEEEECCCCCHH---HHHHcCCeEEECCH
Confidence 1 01247777655544433 24567999886533
No 291
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=63.00 E-value=20 Score=35.76 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=66.5
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHHcCCEEEEEc---CHHHHHHHhCCCCCccEEEE--eCCCC-CCCH-HHHHHHHH
Q 002879 724 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFM--DIQMP-EMDG-FEATKIIR 792 (871)
Q Consensus 724 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~Dlilm--Di~MP-~mdG-~e~~~~IR 792 (871)
..+||+. |-+..-..++..+|+..||+|+.-. ..++.++.+. .+.+|+|.+ -..|. .|+. -+..+.+|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~-~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAA-KHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHH-HTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHH-HcCCCEEEEEchhcccCcHHHHHHHHHHHH
Confidence 3578887 7788888999999999999998642 4455556664 467999999 87764 2222 23344555
Q ss_pred hhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCC
Q 002879 793 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 849 (871)
Q Consensus 793 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP 849 (871)
+.. ...++||++--+-..++ -|-+.|+|.|-.-.
T Consensus 171 ~~~--------------------~~~~v~v~vGG~~~~~~---~a~~iGad~~~~dA 204 (215)
T 3ezx_A 171 EEK--------------------LRDSVKCMFGGAPVSDK---WIEEIGADATAENA 204 (215)
T ss_dssp HTT--------------------CGGGSEEEEESSSCCHH---HHHHHTCCBCCSSH
T ss_pred HcC--------------------CCCCCEEEEECCCCCHH---HHHHhCCeEEECCH
Confidence 421 01257777655545443 35567999986543
No 292
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=54.04 E-value=5.1 Score=41.42 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=43.5
Q ss_pred CeEEEEeCC--HHHHHHHHHHHHHcCCEEEEEcCHHH--HHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhh
Q 002879 725 RKILIVDDN--NVNLKVAAAGLKRYGAAVVCVERGKK--ATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREM 794 (871)
Q Consensus 725 ~~ILvVdDn--~~n~~~l~~~L~~~g~~v~~a~~g~e--Al~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~ 794 (871)
++||||+++ +.-...+...|+..|++|+......- -.+.+ ..||+|+++-... ..+- +.++.|++.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L---~~yDvIIl~d~~~~~l~~-~~~~~L~~y 75 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL---AKQDLVILSDYPAERMTA-QAIDQLVTM 75 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH---HTCSEEEEESCCGGGBCH-HHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH---hcCCEEEEcCCccccCCH-HHHHHHHHH
Confidence 589999998 66778899999999999988664432 11223 2599998873222 2332 445566654
No 293
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=50.39 E-value=1.6e+02 Score=32.18 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=64.2
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCC------C-----CCCCHHHH
Q 002879 725 RKILIVD----DNNVNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQ------M-----PEMDGFEA 787 (871)
Q Consensus 725 ~~ILvVd----Dn~~n~~~l~~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~------M-----P~mdG~e~ 787 (871)
..++++| +.......++.+-+.++..|. .+.+.++|..+.. ...|.|..-+. . .+...+++
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~--aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~a 234 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE--NGADGIKVGIGPGSICTTRIVAGVGVPQITA 234 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH--TTCSEEEECC---------CCSCBCCCHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH--cCCCEEEEeCCCCcCcccccccccchhHHHH
Confidence 3566664 222334455554444577666 4788888888763 45898887321 0 01234566
Q ss_pred HHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 788 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 788 ~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
+..+++.- ....+|||+--+-.+..+..+++.+|+++..
T Consensus 235 l~~v~~~~--------------------~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 235 IEKCSSVA--------------------SKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHH--------------------TTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHH--------------------HhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 66665421 1136899998888889999999999999875
No 294
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=50.38 E-value=86 Score=28.24 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=57.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcC-HHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVER-GKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~-g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
|..|.++|.|+..... +++.|+.+...+. -.+.++.. .-...|+|+.-+.-+. +-..++..+|+.
T Consensus 30 g~~v~vid~~~~~~~~----~~~~g~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~~~~-~n~~~~~~a~~~-------- 95 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDE----LRERGVRAVLGNAANEEIMQLA-HLECAKWLILTIPNGY-EAGEIVASARAK-------- 95 (140)
T ss_dssp TCCEEEEESCHHHHHH----HHHTTCEEEESCTTSHHHHHHT-TGGGCSEEEECCSCHH-HHHHHHHHHHHH--------
T ss_pred CCCEEEEECCHHHHHH----HHHcCCCEEECCCCCHHHHHhc-CcccCCEEEEECCChH-HHHHHHHHHHHH--------
Confidence 4579999999876544 3446887765442 23345443 2246899887543211 123355666664
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+.++||+... +.+......++|+|..+.
T Consensus 96 --------------~~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 96 --------------NPDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp --------------CSSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred --------------CCCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 23567887764 455666777899997774
No 295
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=49.30 E-value=15 Score=38.20 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=49.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCC-CCHHHHHHHHHh
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPE-MDGFEATKIIRE 793 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~-~~~DlilmDi~MP~-mdG~e~~~~IR~ 793 (871)
.+.++.+||-++.....++.-++...-..+...|+.+++..+.++ ..||+||||-=--. .+.-++++.|.+
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 356899999999999999988876444455678999998876432 36999999962221 233444455554
No 296
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=48.18 E-value=72 Score=31.04 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred EEEEeCCH--HHHHHHHHHHHHcCCEEEEE----cCHHHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHh
Q 002879 727 ILIVDDNN--VNLKVAAAGLKRYGAAVVCV----ERGKKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIRE 793 (871)
Q Consensus 727 ILvVdDn~--~n~~~l~~~L~~~g~~v~~a----~~g~eAl~~l~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~ 793 (871)
.+++-+.+ .....+...++++|..+... .+..+.++.+. ....|.|-.+ |+. .+++.++++|+
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~-~~g~d~i~v~---~g~~g~~~~~~~~~~i~~l~~ 155 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLE-EAGADMLAVH---TGTDQQAAGRKPIDDLITMLK 155 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHH-HHTCCEEEEE---CCHHHHHTTCCSHHHHHHHHH
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-HcCCCEEEEc---CCCcccccCCCCHHHHHHHHH
Confidence 44444443 34456667778888876642 33323333332 2346877665 332 24677777776
Q ss_pred hhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHhh
Q 002879 794 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 861 (871)
Q Consensus 794 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~-----KP~~~~~L~~~l~~ 861 (871)
. .+++||++- +....++..+++++|+|+++. +.-++.+-.+.+.+
T Consensus 156 ~----------------------~~~~~i~~~-gGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~ 205 (211)
T 3f4w_A 156 V----------------------RRKARIAVA-GGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQ 205 (211)
T ss_dssp H----------------------CSSCEEEEE-SSCCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHH
T ss_pred H----------------------cCCCcEEEE-CCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHH
Confidence 3 125777754 444588899999999999865 44455544444433
No 297
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=46.99 E-value=1.2e+02 Score=31.33 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhhccccccccccccchhhh
Q 002879 737 LKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 812 (871)
Q Consensus 737 ~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 812 (871)
...+....+++|..+. .+.+.+++...+. ...|+|-.- ...... +++.++++++.-
T Consensus 151 l~~l~~~a~~lGl~~lvev~t~ee~~~A~~--~Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v----------------- 210 (272)
T 3qja_A 151 LVSMLDRTESLGMTALVEVHTEQEADRALK--AGAKVIGVNARDLMTLDV-DRDCFARIAPGL----------------- 210 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HTCSEEEEESBCTTTCCB-CTTHHHHHGGGS-----------------
T ss_pred HHHHHHHHHHCCCcEEEEcCCHHHHHHHHH--CCCCEEEECCCccccccc-CHHHHHHHHHhC-----------------
Confidence 3444555667898654 5677777655552 347887664 222222 356677776521
Q ss_pred ccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHhh
Q 002879 813 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 861 (871)
Q Consensus 813 ~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~-----KP~~~~~L~~~l~~ 861 (871)
...+|+|+-.+-...++..++.++|+|+++. +.-++.+..+.+..
T Consensus 211 ----~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~ 260 (272)
T 3qja_A 211 ----PSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVT 260 (272)
T ss_dssp ----CTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHT
T ss_pred ----cccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHh
Confidence 1258999999888899999999999999987 33355554444433
No 298
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=46.97 E-value=54 Score=32.30 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=51.2
Q ss_pred CCCeEEEEe------CCHHHHHHHHHHHHHcCCEEEEE----cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHH
Q 002879 723 LGRKILIVD------DNNVNLKVAAAGLKRYGAAVVCV----ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 792 (871)
Q Consensus 723 ~~~~ILvVd------Dn~~n~~~l~~~L~~~g~~v~~a----~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR 792 (871)
.+++|++|+ |...+......+|++.|+++... .+.++..+.+. ..|.|++ |+.+-+.+.+.++
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~---~ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR---KNDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH---HSSEEEE----CCSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH---hCCEEEE----CCCCHHHHHHHHH
Confidence 357999997 55568888899999999999888 47777666663 3688886 8988888888887
Q ss_pred hh
Q 002879 793 EM 794 (871)
Q Consensus 793 ~~ 794 (871)
+.
T Consensus 99 ~~ 100 (206)
T 3l4e_A 99 RT 100 (206)
T ss_dssp HH
T ss_pred HC
Confidence 63
No 299
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=44.23 E-value=48 Score=34.01 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.6
Q ss_pred CccEEEEccCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Q 002879 819 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVS 860 (871)
Q Consensus 819 ~~pIIalTa~~~------~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~ 860 (871)
++|+++|+-... ......|.++|+|+++.-.+..+++...+.
T Consensus 94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~ 141 (262)
T 2ekc_A 94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKA 141 (262)
T ss_dssp TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 589999854321 456678999999999998777776654443
No 300
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=43.05 E-value=72 Score=31.99 Aligned_cols=86 Identities=9% Similarity=0.107 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCEEEEEcC---HHHHHHHhCCCCCcc-EEE-EeCCCCCCCH---------HHHHHHHHhhhcccccc
Q 002879 736 NLKVAAAGLKRYGAAVVCVER---GKKATELLMPPHQFD-ACF-MDIQMPEMDG---------FEATKIIREMEHNFNNR 801 (871)
Q Consensus 736 n~~~l~~~L~~~g~~v~~a~~---g~eAl~~l~~~~~~D-lil-mDi~MP~mdG---------~e~~~~IR~~~~~~~~~ 801 (871)
+...+...++++|..+...-+ ..++++.+.. . .| +|. +.. |+..| ++.++++|+.
T Consensus 121 ~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~-~-~d~~i~~~~~--~G~~g~~~~~~~~~~~~i~~l~~~------- 189 (248)
T 1geq_A 121 HAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDD-M-TTGFVYLVSL--YGTTGAREEIPKTAYDLLRRAKRI------- 189 (248)
T ss_dssp GHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHH-H-CSSEEEEECC--C-------CCCHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHh-c-CCCeEEEEEC--CccCCCCCCCChhHHHHHHHHHhh-------
Confidence 345566677788887665443 3555555422 1 34 553 444 55433 4455666642
Q ss_pred ccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 802 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
.++||++--+-...++..+++++|+|+++.=
T Consensus 190 ----------------~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 190 ----------------CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp ----------------CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred ----------------cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 1578887666556599999999999998764
No 301
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=42.92 E-value=54 Score=33.34 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=25.9
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEEe------CCCCHHHHHHH
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYVS------KPFEAEQLYRE 858 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl~------KP~~~~~L~~~ 858 (871)
.+|||+..+-...++..+++++|+|+++. .|++..++.+.
T Consensus 200 ~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 200 TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC------------
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 58999999888889999999999998765 34455554443
No 302
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=42.85 E-value=43 Score=33.36 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=49.7
Q ss_pred ChhchHHHHHHHh--cCCceeeccccccccCCceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecchHHHHHHHHHHh
Q 002879 86 GKEDRENVLRARA--SGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 163 (871)
Q Consensus 86 ~~~~~~~~~~a~~--tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l~~~~l~~~ 163 (871)
+...|+....|++ +|+.+++.|+.-..++.+.+.+..|++..+. .+.|++++.++++.|.+ ++..+
T Consensus 94 ~~~~r~~f~~a~~~~~~~~~is~p~~~~~~g~~~i~~~~pi~~~~g-----------~~~Gvl~~~i~l~~l~~-~~~~~ 161 (254)
T 3lif_A 94 DNSDRSYFRYHRANDDHTLLITGPIQSRTSGVWVFVVSRRLETTDG-----------KFFGVVVATIESEYFST-FYKTF 161 (254)
T ss_dssp BCTTSHHHHHHHHCCCCCCEEEEEEECTTTCCEEEEEEEEEECTTC-----------CEEEEEEEEECHHHHHH-HHTTS
T ss_pred CcccHHHHHHHHhCCCCCeEECCceecCCCCcEEEEEEeeeeCCCC-----------CEeEEEEEEECHHHHHH-HHHhc
Confidence 3456788999998 7899999998754467788889999987321 24699999999987665 44443
No 303
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=42.46 E-value=22 Score=36.89 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEcc------CCCHHHHHHHHHcCCCEEEeCCCCHHH
Q 002879 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA------DVIQATYEECLRSGMDGYVSKPFEAEQ 854 (871)
Q Consensus 783 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa------~~~~~~~~~~~~~G~d~yl~KP~~~~~ 854 (871)
+.++.++++|+. ..++||++||- ...+....+|.++|+|+.|.--+..++
T Consensus 83 ~~~~~v~~~r~~----------------------~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee 138 (271)
T 3nav_A 83 ICFELIAQIRAR----------------------NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNE 138 (271)
T ss_dssp HHHHHHHHHHHH----------------------CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGG
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 457888888862 23689999973 234667889999999998885554444
No 304
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=41.39 E-value=1.1e+02 Score=36.20 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=74.4
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CC-HHHHHHHHHhhh
Q 002879 725 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GFEATKIIREME 795 (871)
Q Consensus 725 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~-md-G~e~~~~IR~~~ 795 (871)
.+|++. |.+..-..++..+|+..||+|+.- ...++.++... .+.+|+|.+...|.. |. .-++.+.+|+..
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~-e~~adiVglSsl~~~~~~~~~~vi~~Lr~~G 683 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAV-DADVHAVGVSTLAAGHKTLVPELIKELNSLG 683 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-HTTCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHH-HcCCCEEEEeeecHHHHHHHHHHHHHHHhcC
Confidence 467765 456667788999999999999863 34577777764 467999998877642 22 233445555421
Q ss_pred ccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhhC
Q 002879 796 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 796 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~~ 863 (871)
..+++|+ +-+-.-..+...+.+.|+|+|...=-+..+....+.+++
T Consensus 684 ---------------------~~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 684 ---------------------RPDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp ---------------------CTTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred ---------------------CCCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 1244444 333233445677889999999985556666666555443
No 305
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=40.53 E-value=1.6e+02 Score=31.69 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=64.1
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHHc-CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCC------------CCHH
Q 002879 725 RKILIVD----DNNVNLKVAAAGLKRY-GAAVV--CVERGKKATELLMPPHQFDACFMDIQMPE------------MDGF 785 (871)
Q Consensus 725 ~~ILvVd----Dn~~n~~~l~~~L~~~-g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP~------------mdG~ 785 (871)
..++++| +.+.....++.+-+.+ +..|. .+.+.++|..+.. ...|.|..-+. |+ ...+
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~--aGAD~I~vG~g-pGs~~~tr~~~g~g~p~~ 197 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE--AGVSAVKVGIG-PGSICTTRIVTGVGVPQI 197 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH--HTCSEEEECSS-CSTTBCHHHHHCCCCCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHH--cCCCEEEEecC-CCCCCCcccccCcccchH
Confidence 3567765 3343444455555555 55554 4788888887763 45899887321 22 2345
Q ss_pred HHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 786 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+++..+++.-+ ...+|||+--+-.+..+..+++.+|+|....
T Consensus 198 ~~l~~v~~~~~--------------------~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 198 TAIADAAGVAN--------------------EYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHG--------------------GGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHh--------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 66666654211 1258999888777889999999999998764
No 306
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=38.79 E-value=2.1e+02 Score=29.94 Aligned_cols=82 Identities=20% Similarity=0.124 Sum_probs=57.3
Q ss_pred HHHHHHcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC----C---CCHHHHHHHHHhhhccccccccccccchhhh
Q 002879 741 AAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP----E---MDGFEATKIIREMEHNFNNRIRRGEVSIEAY 812 (871)
Q Consensus 741 ~~~L~~~g~~v~~-a~~g~eAl~~l~~~~~~DlilmDi~MP----~---mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 812 (871)
...+++.|..+.. +.+..+|..... ...|.|+.+-.-+ + ...+++++++++.
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~--~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~------------------ 170 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAER--LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR------------------ 170 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHH--TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT------------------
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHH--cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh------------------
Confidence 3456666876654 678888877653 4579888753212 1 2467777777752
Q ss_pred ccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 813 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 813 ~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+|||+--+-.+.++..+++.+|+|+...
T Consensus 171 -----~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 171 -----LRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp -----CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred -----cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 258999887777889999999999998764
No 307
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=38.65 E-value=27 Score=35.90 Aligned_cols=74 Identities=18% Similarity=0.054 Sum_probs=48.5
Q ss_pred CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCC--C---CCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCc
Q 002879 748 GAAVV--CVERGKKATELLMPPHQFDACFMDIQM--P---EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 820 (871)
Q Consensus 748 g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~M--P---~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 820 (871)
|..+. ++.+..++..... ...|.| +-..- + +..+.+.++++|+. ..+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~--~gad~v-~~~~~~~Gt~~~~~~~~~l~~i~~~-----------------------~~i 179 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEE--LGVHAI-MPGASPIGSGQGILNPLNLSFIIEQ-----------------------AKV 179 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHH--HTCSCB-EECSSSTTCCCCCSCHHHHHHHHHH-----------------------CSS
T ss_pred CeEEEEEcCCCHHHHHHHHH--hCCCEE-EECCcccCCCCCCCCHHHHHHHHhc-----------------------CCC
Confidence 76655 4456555544432 235666 22110 0 12347788888862 258
Q ss_pred cEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 821 PILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 821 pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
|||+.-+-...++..+++++|+|+++.
T Consensus 180 Pviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 180 PVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 999988888899999999999999875
No 308
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=38.37 E-value=2.9e+02 Score=28.38 Aligned_cols=96 Identities=8% Similarity=0.040 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC---CCCCCHHHHHHHHHhhhccccccccccccchhhh
Q 002879 737 LKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ---MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 812 (871)
Q Consensus 737 ~~~l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~---MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 812 (871)
...+....+.+|..+. ++.+.+|+...+. ..+|+|=..-. --..| ++.+.++...-
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~--~ga~iIGinnr~l~t~~~d-l~~~~~L~~~i----------------- 217 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALK--LSSRLLGVNNRNLRSFEVN-LAVSERLAKMA----------------- 217 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTT--SCCSEEEEECBCTTTCCBC-THHHHHHHHHS-----------------
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHh--cCCCEEEECCCCCccCCCC-hHHHHHHHHhC-----------------
Confidence 3444555667898654 6788888766653 45888854421 11122 56677776531
Q ss_pred ccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHH
Q 002879 813 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLY 856 (871)
Q Consensus 813 ~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~-----KP~~~~~L~ 856 (871)
...+|+|+-++-...++..++.++|+|+++. ||-++.+-.
T Consensus 218 ----p~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~ 262 (272)
T 3tsm_A 218 ----PSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAAT 262 (272)
T ss_dssp ----CTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHH
T ss_pred ----CCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHH
Confidence 1257999999999999999999999999986 565554433
No 309
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=38.35 E-value=94 Score=30.55 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=46.4
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEE
Q 002879 753 CVERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 825 (871)
Q Consensus 753 ~a~~g~eAl~~l~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 825 (871)
.+.+..++.+... ...|.|+++-..+. --|++.++.+++. ..+||++.
T Consensus 116 sv~t~~~~~~a~~--~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~-----------------------~~~pvia~ 170 (221)
T 1yad_A 116 SVHSLEEAVQAEK--EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR-----------------------ISIPVIAI 170 (221)
T ss_dssp EECSHHHHHHHHH--TTCSEEEEECCC----------CHHHHHHHHHHH-----------------------CCSCEEEE
T ss_pred EcCCHHHHHHHHh--CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh-----------------------CCCCEEEE
Confidence 4567777766553 34798888653322 2356777777642 15788877
Q ss_pred ccCCCHHHHHHHHHcCCCEEEe
Q 002879 826 TADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 826 Ta~~~~~~~~~~~~~G~d~yl~ 847 (871)
-+- ..+...+++++|++++..
T Consensus 171 GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 171 GGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp SSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCC-CHHHHHHHHHcCCCEEEE
Confidence 665 889999999999998764
No 310
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=38.08 E-value=1.5e+02 Score=31.81 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC------------CCCHHHHHHHHHhhhccccc
Q 002879 735 VNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP------------EMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 735 ~n~~~l~~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP------------~mdG~e~~~~IR~~~~~~~~ 800 (871)
.....++.+-+.++..|. .+.+.++|..+.. ...|.|..-+. | +...++++..+++.-+
T Consensus 132 ~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~--aGaD~I~VG~~-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~---- 204 (361)
T 3khj_A 132 NIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE--NGADGIKVGIG-PGSICTTRIVAGVGVPQITAIEKCSSVAS---- 204 (361)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH--TTCSEEEECSS-CCTTCCHHHHTCBCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH--cCcCEEEEecC-CCcCCCcccccCCCCCcHHHHHHHHHHHh----
Confidence 344555555555677665 4778888877663 45798887321 1 1234556666654211
Q ss_pred cccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
...+|||+--+-.+.++..+++.+|+|..+
T Consensus 205 ----------------~~~iPVIA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 205 ----------------KFGIPIIADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp ----------------HHTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred ----------------hcCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 114899988777789999999999999875
No 311
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=37.72 E-value=22 Score=36.82 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCccEEEEccCC------CHHHHHHHHHcCCCEEEeCCCCHHHH
Q 002879 818 FHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQL 855 (871)
Q Consensus 818 ~~~pIIalTa~~------~~~~~~~~~~~G~d~yl~KP~~~~~L 855 (871)
.++||++|+-.. .+....+|.++|+|+.+.--...++.
T Consensus 94 ~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~ 137 (267)
T 3vnd_A 94 PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEES 137 (267)
T ss_dssp TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGC
T ss_pred CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhH
Confidence 368999997532 25678889999999998866655543
No 312
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=37.30 E-value=91 Score=31.55 Aligned_cols=85 Identities=11% Similarity=0.096 Sum_probs=56.6
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEE
Q 002879 753 CVERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 825 (871)
Q Consensus 753 ~a~~g~eAl~~l~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 825 (871)
.+.+..|+.+... ...|.|...--.|. --|++.++++++.. ...+||+++
T Consensus 141 S~ht~~Ea~~A~~--~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~---------------------~~~iPvvAi 197 (243)
T 3o63_A 141 STHDPDQVAAAAA--GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG---------------------GDDKPWFAI 197 (243)
T ss_dssp EECSHHHHHHHHH--SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC------------------------CCCEEEE
T ss_pred eCCCHHHHHHHhh--CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc---------------------cCCCCEEEe
Confidence 4577788777653 45899988543332 23678888887520 126899999
Q ss_pred ccCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHhh
Q 002879 826 TADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 861 (871)
Q Consensus 826 Ta~~~~~~~~~~~~~G~d~yl~-----KP~~~~~L~~~l~~ 861 (871)
-+- ..++..+++++|++++.. +.-++.+-.+.+.+
T Consensus 198 GGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~ 237 (243)
T 3o63_A 198 GGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRS 237 (243)
T ss_dssp SSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 765 778899999999999875 44455554444443
No 313
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=37.26 E-value=1.1e+02 Score=36.08 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=75.0
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CC-HHHHHHHHHhhh
Q 002879 725 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GFEATKIIREME 795 (871)
Q Consensus 725 ~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~-md-G~e~~~~IR~~~ 795 (871)
.+|++. |.+..-..++..+|+..||+|+.- ...++.++... .+.+|+|.+...|.. |. .-++.+.+|+..
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~-e~~adiVglSsl~~~~~~~~~~vi~~L~~~G 675 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAV-EADVHVVGVSSLAGGHLTLVPALRKELDKLG 675 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHH-HTTCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH-HcCCCEEEEeeecHhHHHHHHHHHHHHHhcC
Confidence 467776 666677788999999999999863 24577777774 467999998877642 22 234455555421
Q ss_pred ccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhh
Q 002879 796 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 861 (871)
Q Consensus 796 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~~ 861 (871)
..+++|+ +-+-.-..+...+.+.|+|+|..-=-+..++...+.+
T Consensus 676 ---------------------~~~i~Vi-vGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~ 719 (727)
T 1req_A 676 ---------------------RPDILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVK 719 (727)
T ss_dssp ---------------------CTTSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHH
T ss_pred ---------------------CCCCEEE-EcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHH
Confidence 1244444 3333344466778999999999865666666555544
No 314
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=37.11 E-value=1.4e+02 Score=30.67 Aligned_cols=112 Identities=10% Similarity=0.055 Sum_probs=70.9
Q ss_pred CeEEEE----eCCHHHHHHHHHH--------HHHc-CCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCC-HHH-
Q 002879 725 RKILIV----DDNNVNLKVAAAG--------LKRY-GAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMD-GFE- 786 (871)
Q Consensus 725 ~~ILvV----dDn~~n~~~l~~~--------L~~~-g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~md-G~e- 786 (871)
.+|++. |-+..-..++..+ |+.. ||+|+.. ...++.++... .+.+|+|.+-..|...+ ..+
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~-e~~~d~VglS~l~t~~~~~~~~ 199 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAV-ELEADVLLVSQTVTQKNVHIQN 199 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHH-HTTCSEEEEECCCCTTSHHHHH
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEEeecCCccchHHH
Confidence 367665 6777777888878 9999 9999753 34556566664 46799999999887522 222
Q ss_pred ---HHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Q 002879 787 ---ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 860 (871)
Q Consensus 787 ---~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~ 860 (871)
+.+.+|+.. ...++||++=-+.. +...+.+.|+|.|..--.+..++...+.
T Consensus 200 ~~~~i~~L~~~g--------------------~~~~i~vivGG~~~---~~~~a~~iGad~~~~da~~~~~~a~~l~ 253 (262)
T 1xrs_B 200 MTHLIELLEAEG--------------------LRDRFVLLCGGPRI---NNEIAKELGYDAGFGPGRFADDVATFAV 253 (262)
T ss_dssp HHHHHHHHHHTT--------------------CGGGSEEEEECTTC---CHHHHHTTTCSEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------------------CCCCCEEEEECCcC---CHHHHHHcCCeEEECCchHHHHHHHHHH
Confidence 333444311 01236665433333 3345778899998876677666665554
No 315
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=36.18 E-value=28 Score=35.86 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=27.8
Q ss_pred CccEEEEccC------CCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 002879 819 HVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLY 856 (871)
Q Consensus 819 ~~pIIalTa~------~~~~~~~~~~~~G~d~yl~KP~~~~~L~ 856 (871)
++||++|+-. ........|.++|+|+++.-....+++.
T Consensus 94 ~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~ 137 (268)
T 1qop_A 94 TIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESA 137 (268)
T ss_dssp SSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCH
T ss_pred CCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 5899988622 2257778899999999998777655443
No 316
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=35.61 E-value=96 Score=31.06 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe------CCCCHHHHHHH
Q 002879 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS------KPFEAEQLYRE 858 (871)
Q Consensus 785 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~------KP~~~~~L~~~ 858 (871)
++.++++++. ..+|||+--+-...++..+++++|+|+.+. .|++..++.+.
T Consensus 185 ~~~i~~l~~~-----------------------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 241 (252)
T 1ka9_F 185 LRLTRMVAEA-----------------------VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRY 241 (252)
T ss_dssp HHHHHHHHHH-----------------------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 8888888863 258999988888889999999999999875 57788888776
Q ss_pred Hhh
Q 002879 859 VSR 861 (871)
Q Consensus 859 l~~ 861 (871)
+.+
T Consensus 242 l~~ 244 (252)
T 1ka9_F 242 LAE 244 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 317
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=35.40 E-value=60 Score=31.51 Aligned_cols=63 Identities=21% Similarity=0.121 Sum_probs=46.8
Q ss_pred ChhchHHHHHHHhcCCceeeccccccccCCceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecchHHHHHH
Q 002879 86 GKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 158 (871)
Q Consensus 86 ~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l~~~ 158 (871)
++..|+....|..+|+.+++.|+.-..++.+.+.+..|++..+ .....|+++..++++.|.+.
T Consensus 88 ~~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~pi~~~~----------~g~~~Gvl~~~i~~~~l~~~ 150 (240)
T 3c8c_A 88 DPRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSA----------TGQFLGSIFYDVSLAELAEL 150 (240)
T ss_dssp CGGGSHHHHHHHHHTSCEECCCEECTTTCCEEEEEEEEEECTT----------TCCEEEEEEEEECHHHHHHH
T ss_pred CcccChHHHHHHhcCCcEEeeceEcCCCCeEEEEEEEEEEECC----------CCeEEEEEEEEEEHHHHHHH
Confidence 4456888888998899999999864345667888889998631 01236999999999887653
No 318
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=35.01 E-value=42 Score=29.62 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=40.6
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002879 721 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 777 (871)
Q Consensus 721 ~~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi 777 (871)
++.|-.+|+==-++..|+++..+|..+|+.+..+... . ....||+.+.|-
T Consensus 4 LLdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der------~-~~~eyDi~lTDn 53 (117)
T 2kx7_A 4 LLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER------L-ISQDYDIFLTDN 53 (117)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS------S-SCCCCSEEEEES
T ss_pred cccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc------C-CCCcccEEEecC
Confidence 4567788998899999999999999999988776322 1 245799999995
No 319
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=34.66 E-value=56 Score=33.26 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=48.5
Q ss_pred CChhchHHHHHHHhcCCceeeccccccccCCceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecchHHHHHHH
Q 002879 85 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 159 (871)
Q Consensus 85 s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l~~~~ 159 (871)
.+...|+...+|+.+|+.+++.|+.- ++.+.+.+..|++..+ .+.|+++..++++.|.+.+
T Consensus 119 ~d~~~r~w~~~a~~~~~~~~s~p~~~--~~~~~i~~~~pi~~~g------------~~~Gvl~~~i~l~~l~~~~ 179 (290)
T 3lib_A 119 LHYDSSDYYQLPKATEKDVLTEPYFY--EGVFMVSYVSPIMKEG------------EFAGIGGVDVSLEYVDEVV 179 (290)
T ss_dssp SCTTTSHHHHHHHHHCSCEECCCEEE--TTEEEEEEEEEEEETT------------EEEEEEEEEEEHHHHHHHH
T ss_pred CCCCcchHHHHHHHcCCCEEEcCEEe--CCeEEEEEEEEEEECC------------EEEEEEEEEEeHHHHHHHH
Confidence 45566899999999999999999873 5678888999998522 3469999999998876543
No 320
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=34.13 E-value=66 Score=31.41 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=53.4
Q ss_pred HHHHHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhhccccccccccccchhhhccCCCCC
Q 002879 742 AGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 819 (871)
Q Consensus 742 ~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~ 819 (871)
...+++|..+. .+.+..++.+... ...|.|.+ .| ...|.+.++++++.- ..+
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~--~G~d~v~v---~~t~~~g~~~~~~l~~~~---------------------~~~ 148 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE--AGAQALKI---FPSSAFGPQYIKALKAVL---------------------PSD 148 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH--TTCSEEEE---TTHHHHCHHHHHHHHTTS---------------------CTT
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH--CCCCEEEE---ecCCCCCHHHHHHHHHhc---------------------cCC
Confidence 45566776532 3678888876653 45899885 22 123567777776521 114
Q ss_pred ccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 820 VPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 820 ~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
+||++.-+-. .++..+++++|++++..=
T Consensus 149 ipvia~GGI~-~~~i~~~~~~Ga~gv~vG 176 (212)
T 2v82_A 149 IAVFAVGGVT-PENLAQWIDAGCAGAGLG 176 (212)
T ss_dssp CEEEEESSCC-TTTHHHHHHHTCSEEEEC
T ss_pred CeEEEeCCCC-HHHHHHHHHcCCCEEEEC
Confidence 8998877655 888999999999999743
No 321
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=33.22 E-value=43 Score=34.22 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=47.9
Q ss_pred CChhchHHHHHHHhcCCceeeccccccccCCceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecchHHHHHH
Q 002879 85 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 158 (871)
Q Consensus 85 s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l~~~ 158 (871)
.+...|+...+|+.+|+.+++.|+.- ++.+.+.+..|++..+ .+.|+++..++++.|.+.
T Consensus 120 ~d~~~~~w~~~a~~~~~~~~s~p~~~--~~~~~i~~~~pi~~~g------------~~~Gvl~~~i~l~~l~~~ 179 (291)
T 3li9_A 120 VHYDSSDYYQLPKTTGKDTLTEPYFY--EGIFMVSYDSPIFKNG------------EFAGIAGVDVPLEYVDDV 179 (291)
T ss_dssp CCTTTSHHHHHHHHHCSCEECCCEEE--TTEEEEEEEEEEEETT------------EEEEEEEEEEECHHHHHH
T ss_pred CCCccchHHHHHHHhCCCEEEccEEe--CCEEEEEEEEEEEECC------------EEEEEEEEEeeHHHHHHH
Confidence 44556899999999999999999873 6778888899998522 346999999999887654
No 322
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=33.15 E-value=91 Score=30.24 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=46.8
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEc
Q 002879 754 VERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 826 (871)
Q Consensus 754 a~~g~eAl~~l~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 826 (871)
+.+..++..... ..+|.|+++--.|. ..|++.++++++. .++||++.-
T Consensus 115 ~~t~~e~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------~~~pvia~G 169 (215)
T 1xi3_A 115 VYSLEEALEAEK--KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES-----------------------VKIPVVAIG 169 (215)
T ss_dssp ESSHHHHHHHHH--HTCSEEEEECSSCC----CCCCCHHHHHHHHHHH-----------------------CSSCEEEES
T ss_pred cCCHHHHHHHHh--cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh-----------------------CCCCEEEEC
Confidence 466666655442 35899988754443 3478888888752 157888765
Q ss_pred cCCCHHHHHHHHHcCCCEEEe
Q 002879 827 ADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 827 a~~~~~~~~~~~~~G~d~yl~ 847 (871)
+- ..++..+++++|++++..
T Consensus 170 GI-~~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 170 GI-NKDNAREVLKTGVDGIAV 189 (215)
T ss_dssp SC-CTTTHHHHHTTTCSEEEE
T ss_pred Cc-CHHHHHHHHHcCCCEEEE
Confidence 54 488888899999999853
No 323
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=32.84 E-value=99 Score=30.91 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred HHHHHHHcCCEEEEEcC---HHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhhccccccccccccch
Q 002879 740 AAAGLKRYGAAVVCVER---GKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSI 809 (871)
Q Consensus 740 l~~~L~~~g~~v~~a~~---g~eAl~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~ 809 (871)
....++++|..+-.+-+ ..+.++.+. ...|+|+..---|+.+| ++-++++|++
T Consensus 104 ~i~~i~~~G~k~gval~p~t~~e~l~~~l--~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~--------------- 166 (228)
T 3ovp_A 104 LIKDIRENGMKVGLAIKPGTSVEYLAPWA--NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ--------------- 166 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGTGGGG--GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH---------------
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHh--ccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh---------------
Confidence 44556778887665544 333343332 24788887666788776 3334445542
Q ss_pred hhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 810 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 810 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..++| |.+.+....++..+|.++|+|.++.
T Consensus 167 -------~~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 167 -------FPSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp -------CTTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred -------cCCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 11344 5678888899999999999999876
No 324
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=32.83 E-value=1.4e+02 Score=29.80 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=47.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCE--EE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
+.+|..||=++.....++..+++.|.. +. ...+..+.+..+.....||+|++|...+ +-..+.+.++.
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 158 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKP--NNPHYLRWALR 158 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCchH--HHHHHHHHHHH
Confidence 468999999999999999999988753 43 4567766666553234799999997432 22344555544
No 325
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=31.52 E-value=1.4e+02 Score=34.59 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=71.6
Q ss_pred CeEEEE----eCCHHHHHHH----HHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC----CCHHH-HH
Q 002879 725 RKILIV----DDNNVNLKVA----AAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE----MDGFE-AT 788 (871)
Q Consensus 725 ~~ILvV----dDn~~n~~~l----~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~----mdG~e-~~ 788 (871)
.+|++. |=+..-.+++ ..+|+..||+|+.. ...++.++.+. .+.+|+|.+...|.. |..+. +.
T Consensus 603 GKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~-EedADVVGLSsLLTt~dihL~~MkevI 681 (763)
T 3kp1_A 603 LKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAI-ELKADAILASTIISHDDIHYKNMKRIH 681 (763)
T ss_dssp CEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHHH
T ss_pred CEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCchhhHHHHHHHH
Confidence 478888 5555555443 57899999999854 35677777774 467999999988876 34332 34
Q ss_pred HHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Q 002879 789 KIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 860 (871)
Q Consensus 789 ~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~~l~ 860 (871)
+.+|+.. ....+||++==+-..+ .-+.+.|+|.|..--.+..++...+.
T Consensus 682 elLrE~G--------------------lrDkIkVIVGGa~~tq---d~AkeIGADa~f~DATeAVeVA~~Ll 730 (763)
T 3kp1_A 682 ELAVEKG--------------------IRDKIMIGCGGTQVTP---EVAVKQGVDAGFGRGSKGIHVATFLV 730 (763)
T ss_dssp HHHHHTT--------------------CTTTSEEEEECTTCCH---HHHHTTTCSEEECTTCCHHHHHHHHH
T ss_pred HHHHhcC--------------------CCCCCEEEEECCCCCH---HHHHHcCCcEEECCcchHHHHHHHHH
Confidence 4455421 1123566543333333 23568999999887777766665554
No 326
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=31.27 E-value=45 Score=33.57 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=46.5
Q ss_pred chHHHHHHHhcCCceeeccccccccC-CceEEEEEeeecCCCCCCCChhHHHHhhcceeeeecchHHHHHHH
Q 002879 89 DRENVLRARASGKGVLTAPFRLLKTN-RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 159 (871)
Q Consensus 89 ~~~~~~~a~~tg~~~~t~p~~l~~~~-~~g~~~~~pvy~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l~~~~ 159 (871)
.|+...+|+.+|+.++|.|+.-..++ .+.+.+..|++..+ .+.|+++..++++.|.+.+
T Consensus 117 ~~~w~~~a~~~~~~~~s~~~~~~~~~~~~~i~~~~pi~~~g------------~~~Gv~~~~i~l~~l~~~~ 176 (274)
T 3lic_A 117 NWDWWSKAINQVGGYWSKAYFDEGAGNVLMITYAVPFGVQP------------DYFGVTTVDLALDRLPEQL 176 (274)
T ss_dssp SCHHHHTTTTTSSCEECCCEECTTTTCSEEEEEEEEESCTT------------CCCEEEEEEEEGGGHHHHH
T ss_pred CCcHHHHHHhcCCCEEEeeEEcCCCCceEEEEEEEEEccCC------------EEEEEEEEEEEHHHHHHHh
Confidence 78999999999999999998755444 57888899998622 2369999999998876543
No 327
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=30.92 E-value=88 Score=30.85 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCE---EEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAA---VVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~---v~~-a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
+.+|.-||-++.....++..+++.|.. +.. ..+..+.+..+ ....||+||+|...+ +-.++.+.+..
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-~~~~fD~V~~d~~~~--~~~~~l~~~~~ 151 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-ANDSYQLVFGQVSPM--DLKALVDAAWP 151 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-CTTCEEEEEECCCTT--THHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-cCCCcCeEEEcCcHH--HHHHHHHHHHH
Confidence 458999999999999999999998865 554 44555555444 246799999997543 33345555544
No 328
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=30.68 E-value=1.3e+02 Score=30.06 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=45.1
Q ss_pred CeEEEEeCC------HHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 725 RKILIVDDN------NVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn------~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
++|++|+-. ..|...+..+|++.|+++..+ .+..+.++ ..|.|++ |+.+-..+.+.+++
T Consensus 32 ~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~------~ad~I~l----pGG~~~~~~~~l~~ 99 (229)
T 1fy2_A 32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE------KAEIIIV----GGGNTFQLLKESRE 99 (229)
T ss_dssp CEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH------HCSEEEE----CCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh------cCCEEEE----CCCcHHHHHHHHHH
Confidence 589999754 378888899999999998887 44334333 2588876 89898888888887
No 329
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=30.46 E-value=2.9e+02 Score=29.91 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHc-CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCC---------C--CCCHHHHHHHHHhhhccccc
Q 002879 735 VNLKVAAAGLKRY-GAAVV--CVERGKKATELLMPPHQFDACFMDIQM---------P--EMDGFEATKIIREMEHNFNN 800 (871)
Q Consensus 735 ~n~~~l~~~L~~~-g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~M---------P--~mdG~e~~~~IR~~~~~~~~ 800 (871)
...+.++.+-+.. +..|. .+.+.++|..+.. ...|.|..-... + +.-.++++..+++.-.
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~--~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~---- 253 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS--VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACN---- 253 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT--TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh--cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHh----
Confidence 3444444444444 66655 4677777776653 458988882110 0 1224566666665311
Q ss_pred cccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 801 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
...+|||+.-+-.+.++..+++.+|+|....
T Consensus 254 ----------------~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 254 ----------------NTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp ----------------TSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ----------------hcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 1268999988888899999999999998765
No 330
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=29.69 E-value=94 Score=34.39 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=32.2
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHHHcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeC
Q 002879 724 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDI 777 (871)
Q Consensus 724 ~~~ILvVdDn~---~n~~~l~~~L~~~g~~v~~a~~g-------~eAl~~l~~~~~~DlilmDi 777 (871)
|++|++||-++ .....+...-...|..+..+..+ .++++.+. ...||+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~-~~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK-LKFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH-HTTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH-hCCCCEEEEEC
Confidence 67899999886 22233333334567776665432 33455442 24699999999
No 331
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=29.58 E-value=1.2e+02 Score=33.17 Aligned_cols=97 Identities=18% Similarity=0.307 Sum_probs=61.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
+..|.+||.|+.....+ ++.|+.+...+-. .+.++.. .-...|+|+.-+.-+ ..-..++..+|++
T Consensus 27 g~~vvvId~d~~~v~~~----~~~g~~vi~GDat~~~~L~~a-gi~~A~~viv~~~~~-~~n~~i~~~ar~~-------- 92 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDP-QTNLQLTEMVKEH-------- 92 (413)
T ss_dssp TCCEEEEECCHHHHHHH----HHTTCCCEESCTTCHHHHHHT-TTTTCSEEEECCSSH-HHHHHHHHHHHHH--------
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEcCCCCHHHHHhc-CCCccCEEEECCCCh-HHHHHHHHHHHHh--------
Confidence 45799999998765543 4578877664433 3445554 235689998866321 1234455666654
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCCC
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 850 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~ 850 (871)
.++++||+-+.+ .+......++|+|..+.--+
T Consensus 93 --------------~p~~~Iiara~~--~~~~~~L~~~Gad~Vi~~~~ 124 (413)
T 3l9w_A 93 --------------FPHLQIIARARD--VDHYIRLRQAGVEKPERETF 124 (413)
T ss_dssp --------------CTTCEEEEEESS--HHHHHHHHHTTCSSCEETTH
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHCCCCEEECccH
Confidence 346788887754 56667778999998775433
No 332
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=29.25 E-value=4.9e+02 Score=26.75 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=61.5
Q ss_pred HHHHHHHcCC-EEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCC
Q 002879 740 AAAGLKRYGA-AVVC--VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 816 (871)
Q Consensus 740 l~~~L~~~g~-~v~~--a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~ 816 (871)
++..|+. |. .+-. -.+..+.++.+. ...+|.|++|++=...+--++...++...
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~-~~GaD~v~lDlEh~~~~~~~~~~~l~a~~--------------------- 86 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLA-GAGFDWLLIDGEHAPNNVQTVLTQLQAIA--------------------- 86 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHH-TSCCSEEEEESSSSSCCHHHHHHHHHHHT---------------------
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHH-hCCCCEEEEeCCCccchHHHHHHHHHHHH---------------------
Confidence 4555554 43 3332 233344455553 35699999999765555545555555432
Q ss_pred CCCccEEEEccCCCHHHHHHHHHcCCCEEEe-CCCCHHHHHHHHhh
Q 002879 817 NFHVPILAMTADVIQATYEECLRSGMDGYVS-KPFEAEQLYREVSR 861 (871)
Q Consensus 817 ~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~-KP~~~~~L~~~l~~ 861 (871)
....|+++=+...+..+...++++|+++.+. |--+.+++...++.
T Consensus 87 ~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 87 PYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp TSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 1135677777777888999999999998654 33467777766654
No 333
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=29.12 E-value=2.3e+02 Score=29.71 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHHHHHcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhhccccccccccccchhhhcc
Q 002879 741 AAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 814 (871)
Q Consensus 741 ~~~L~~~g~~v~~-a~~g~eAl~~l~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~ 814 (871)
...+++.|..+.. +.+.++|..... ...|.|+.+-.-+ ....+++++++++.
T Consensus 117 ~~~l~~~g~~v~~~v~s~~~a~~a~~--~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~-------------------- 174 (326)
T 3bo9_A 117 IRELKENGTKVIPVVASDSLARMVER--AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS-------------------- 174 (326)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH--------------------
T ss_pred HHHHHHcCCcEEEEcCCHHHHHHHHH--cCCCEEEEECCCCCccCCCccHHHHHHHHHHH--------------------
Confidence 3456667876664 577777766553 3478888764211 12457778877752
Q ss_pred CCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 815 VSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 815 ~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+|||+--+-.+.++..+++.+|++++..
T Consensus 175 ---~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 175 ---VNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp ---CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ---cCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 258999888877899999999999998763
No 334
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=28.69 E-value=1.7e+02 Score=30.57 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=48.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH--cC----CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-------HHHH
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKR--YG----AAV-VCVERGKKATELLMPPHQFDACFMDIQMPE-MDG-------FEAT 788 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~--~g----~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~-mdG-------~e~~ 788 (871)
..+|..||=++.....++..+.. .| -.+ ....|+.+.+... ...||+|++|.-.|. ++| -++.
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l 178 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--EERYDVVIIDLTDPVGEDNPARLLYTVEFY 178 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--CCCEEEEEEECCCCBSTTCGGGGGSSHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc--CCCccEEEECCCCcccccCcchhccHHHHH
Confidence 35899999999999999888764 12 123 3467777766543 467999999987765 223 4666
Q ss_pred HHHHhh
Q 002879 789 KIIREM 794 (871)
Q Consensus 789 ~~IR~~ 794 (871)
+.+++.
T Consensus 179 ~~~~~~ 184 (314)
T 1uir_A 179 RLVKAH 184 (314)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777653
No 335
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=28.68 E-value=1.7e+02 Score=28.79 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=33.9
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEEe------CCCCHHHHHHHHhh
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYVS------KPFEAEQLYREVSR 861 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl~------KP~~~~~L~~~l~~ 861 (871)
++||++-.+-...++..+++++|+|+++. .+.+.+++.+.+++
T Consensus 198 ~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~ 246 (253)
T 1h5y_A 198 RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKE 246 (253)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 58999887777779999999999999864 56677777766654
No 336
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=28.63 E-value=1e+02 Score=30.90 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=48.8
Q ss_pred Ccc-EEEEeCCCCC-CC--HHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCE
Q 002879 769 QFD-ACFMDIQMPE-MD--GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 844 (871)
Q Consensus 769 ~~D-lilmDi~MP~-md--G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~ 844 (871)
.++ ++++++.-.+ +. .++.+++|++. ..+|||+--+-...++..+++++|+|+
T Consensus 164 G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~-----------------------~~ipvia~GGI~~~~d~~~~~~~Gadg 220 (253)
T 1thf_D 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRPL-----------------------TTLPIIASGGAGKMEHFLEAFLAGADA 220 (253)
T ss_dssp TCSEEEEEETTTTTSCSCCCHHHHHHHGGG-----------------------CCSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred CCCEEEEEeccCCCCCCCCCHHHHHHHHHh-----------------------cCCCEEEECCCCCHHHHHHHHHcCChH
Confidence 356 4456654211 12 27888888752 258999988877789999999999998
Q ss_pred EEe------CCCCHHHHHHHHhh
Q 002879 845 YVS------KPFEAEQLYREVSR 861 (871)
Q Consensus 845 yl~------KP~~~~~L~~~l~~ 861 (871)
++. .|++.+++.+.+++
T Consensus 221 v~vGsal~~~~~~~~~~~~~l~~ 243 (253)
T 1thf_D 221 ALAASVFHFREIDVRELKEYLKK 243 (253)
T ss_dssp EEESHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 864 46677777766643
No 337
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=28.44 E-value=79 Score=31.08 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA 749 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~ 749 (871)
+.+|.-||-|+.....++..|++.|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999886
No 338
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=28.05 E-value=71 Score=32.49 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCccEEEEeCCCC--CCC--------------------HHHHHHHHHhhhccccccccccccchhhhccC
Q 002879 758 KKATELLMPPHQFDACFMDIQMP--EMD--------------------GFEATKIIREMEHNFNNRIRRGEVSIEAYENV 815 (871)
Q Consensus 758 ~eAl~~l~~~~~~DlilmDi~MP--~md--------------------G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 815 (871)
.+.++.+ .....|+|-+++-.+ .|| +++.+++||+
T Consensus 35 ~~~~~~l-~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~---------------------- 91 (262)
T 1rd5_A 35 AEALRLL-DGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTP---------------------- 91 (262)
T ss_dssp HHHHHHH-HHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGG----------------------
T ss_pred HHHHHHH-HHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----------------------
Q ss_pred CCCCccEEEEccCCCHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHhhh
Q 002879 816 SNFHVPILAMTADVIQA--TYEECLRSGMDGYVSKPFEAEQLYREVSRF 862 (871)
Q Consensus 816 ~~~~~pIIalTa~~~~~--~~~~~~~~G~d~yl~KP~~~~~L~~~l~~~ 862 (871)
..++|+++|+-..... ..+.|.++|+|+++.-....+++.+.+...
T Consensus 92 -~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 92 -ELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp -GCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred -cCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
No 339
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=27.92 E-value=1.5e+02 Score=30.65 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=0.0
Q ss_pred EEEEeCCHHH----HHHHHHHHHHcCCE---EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhcccc
Q 002879 727 ILIVDDNNVN----LKVAAAGLKRYGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 799 (871)
Q Consensus 727 ILvVdDn~~n----~~~l~~~L~~~g~~---v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 799 (871)
+||.||+... ...++..-+..+.. -..+.+-+|+.+.+ ....|.|.+|-.-| +.++++.+.
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~--~aGaD~I~ld~~~~-----~~~k~av~~----- 236 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEAL--EAGADLILLDNFPL-----EALREAVRR----- 236 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHH--HHTCSEEEEESCCH-----HHHHHHHHH-----
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH--HcCCCEEEECCCCH-----HHHHHHHHH-----
Q ss_pred ccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEE
Q 002879 800 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 845 (871)
Q Consensus 800 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~y 845 (871)
..+++|+++ ++....+...+..++|+|.+
T Consensus 237 ----------------v~~~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 237 ----------------VGGRVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp ----------------HTTSSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred ----------------hCCCCeEEE-EcCCCHHHHHHHHHcCCCEE
No 340
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=27.68 E-value=88 Score=31.68 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.8
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
.+||++...-.+.++..+++++|+|+.+.=
T Consensus 74 ~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 74 TLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp CSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 589999888777888999999999998753
No 341
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=27.46 E-value=1.4e+02 Score=30.92 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHcC-CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC----CCCHHH-------HHHHHHhhhccccccccccccchhh
Q 002879 744 LKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMP----EMDGFE-------ATKIIREMEHNFNNRIRRGEVSIEA 811 (871)
Q Consensus 744 L~~~g-~~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP----~mdG~e-------~~~~IR~~~~~~~~~~~~g~~~~~~ 811 (871)
.++.| +.+.|+.|.++|..+.. -.+|+|.. +|| +.-|.+ +.+.|+++-...
T Consensus 159 A~~~gL~Ti~~v~~~eeA~amA~--agpDiI~~--h~glT~gglIG~~~avs~~~~~e~i~~i~~a~------------- 221 (286)
T 2p10_A 159 AHKLDLLTTPYVFSPEDAVAMAK--AGADILVC--HMGLTTGGAIGARSGKSMDDCVSLINECIEAA------------- 221 (286)
T ss_dssp HHHTTCEECCEECSHHHHHHHHH--HTCSEEEE--ECSCC---------CCCHHHHHHHHHHHHHHH-------------
T ss_pred HHHCCCeEEEecCCHHHHHHHHH--cCCCEEEE--CCCCCCCCcccCCCcccHHHhHHHHHHHHHHH-------------
Confidence 34566 47789999999998873 46899987 566 544432 223333321100
Q ss_pred hccCCCCCccEEEEc-cCCCHHHHHHHHHc--CCCEEEeC
Q 002879 812 YENVSNFHVPILAMT-ADVIQATYEECLRS--GMDGYVSK 848 (871)
Q Consensus 812 ~~~~~~~~~pIIalT-a~~~~~~~~~~~~~--G~d~yl~K 848 (871)
...++.+.|+.-. .-...++...+++. |+++|+.-
T Consensus 222 --~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 222 --RTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp --HHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred --HHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 0013344333323 33678999999999 99999864
No 342
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=27.29 E-value=5e+02 Score=26.25 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=54.3
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHH
Q 002879 757 GKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 836 (871)
Q Consensus 757 g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~ 836 (871)
..+.++.+. ...+|.|++|++=...+--++...++... ....|+++=+...+..+...
T Consensus 28 ~p~~~e~a~-~~GaD~v~lDlE~~~~~~~~~~~~~~a~~---------------------~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 28 TAYMAEIAA-TSGYDWLLIDGEHAPNTIQDLYHQLQAVA---------------------PYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp CHHHHHHHH-TTCCSEEEEETTTSCCCHHHHHHHHHHHT---------------------TSSSEEEEECSSCCHHHHHH
T ss_pred CHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHHHH---------------------hCCCcEEEEeCCCCHHHHHH
Confidence 444455553 35699999999766666655555565432 11345666666677888999
Q ss_pred HHHcCCCEEEe-CCCCHHHHHHHHhh
Q 002879 837 CLRSGMDGYVS-KPFEAEQLYREVSR 861 (871)
Q Consensus 837 ~~~~G~d~yl~-KP~~~~~L~~~l~~ 861 (871)
++++|+++.+. |--+.+++...++.
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 99999997544 44467777666554
No 343
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=27.04 E-value=1.2e+02 Score=30.21 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=51.8
Q ss_pred CHHHHHHHhCCCCCcc-EEEEeCCCCCC---CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCH
Q 002879 756 RGKKATELLMPPHQFD-ACFMDIQMPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 831 (871)
Q Consensus 756 ~g~eAl~~l~~~~~~D-lilmDi~MP~m---dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~ 831 (871)
+..+.++.+. ...+| ++++++.-..+ -.++.+++|++. ..+|||+--+-...
T Consensus 147 ~~~e~~~~~~-~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~-----------------------~~ipvia~GGI~~~ 202 (244)
T 1vzw_A 147 DLYETLDRLN-KEGCARYVVTDIAKDGTLQGPNLELLKNVCAA-----------------------TDRPVVASGGVSSL 202 (244)
T ss_dssp BHHHHHHHHH-HTTCCCEEEEEC-------CCCHHHHHHHHHT-----------------------CSSCEEEESCCCSH
T ss_pred CHHHHHHHHH-hCCCCEEEEeccCcccccCCCCHHHHHHHHHh-----------------------cCCCEEEECCCCCH
Confidence 3345444342 23467 55677642111 137788888852 25899998877778
Q ss_pred HHHHHHHHc---CCCEEEe------CCCCHHHHHHHH
Q 002879 832 ATYEECLRS---GMDGYVS------KPFEAEQLYREV 859 (871)
Q Consensus 832 ~~~~~~~~~---G~d~yl~------KP~~~~~L~~~l 859 (871)
++..+++++ |+|+++. .|++..++.+.+
T Consensus 203 ~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 203 DDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT 239 (244)
T ss_dssp HHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHHHHh
Confidence 999999999 9998764 677777766654
No 344
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=26.57 E-value=3.8e+02 Score=29.91 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=64.6
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHHc-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCC------------CCHH
Q 002879 725 RKILIVD----DNNVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDIQMPE------------MDGF 785 (871)
Q Consensus 725 ~~ILvVd----Dn~~n~~~l~~~L~~~-g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi~MP~------------mdG~ 785 (871)
..++++| ..+.....++.+-+.+ +..+.. +.+.++|..+.. ...|.|..-+. |+ ...+
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~--aGaD~I~vg~g-~Gs~~~t~~~~g~g~p~~ 318 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAE--AGADAVKVGIG-PGSICTTRIVAGVGVPQI 318 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH--TTCSEEEECSS-CSTTCHHHHHTCBCCCHH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH--cCCCEEEECCC-CCcCCCccccCCCCccHH
Confidence 3466665 3444455666666666 444443 678888877663 45899987321 21 2245
Q ss_pred HHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 786 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+++..+++.- ....+|||+--+-...++..+++.+||+..+.
T Consensus 319 ~~l~~v~~~~--------------------~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 319 SAIANVAAAL--------------------EGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHH--------------------TTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHh--------------------ccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 5556665421 12358999988888999999999999998764
No 345
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=26.54 E-value=1.2e+02 Score=35.40 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=38.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
..|++|||+|-..-+...+...|.+.|+.+....+... . ....||.||+
T Consensus 444 ~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~-~~~~~DgIIl 492 (645)
T 3r75_A 444 LSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----V-DLARYDVVVM 492 (645)
T ss_dssp STTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----C-CGGGCSEEEE
T ss_pred CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----c-cccCCCEEEE
Confidence 46789999999988889999999999998887754432 1 1235898887
No 346
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=26.19 E-value=3e+02 Score=27.14 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHc-----C-CCEEEe------CCCCH
Q 002879 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS-----G-MDGYVS------KPFEA 852 (871)
Q Consensus 785 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~-----G-~d~yl~------KP~~~ 852 (871)
+++++++++. ..+|||+--+-...++..++++. | +|+.+. .|++.
T Consensus 177 ~~~i~~l~~~-----------------------~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~ 233 (241)
T 1qo2_A 177 FSLTKKIAIE-----------------------AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTV 233 (241)
T ss_dssp HHHHHHHHHH-----------------------HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCH
T ss_pred HHHHHHHHHh-----------------------cCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCH
Confidence 8888888863 15899998888888999999998 9 998764 67887
Q ss_pred HHHHHHH
Q 002879 853 EQLYREV 859 (871)
Q Consensus 853 ~~L~~~l 859 (871)
+++.+.+
T Consensus 234 ~~~~~~~ 240 (241)
T 1qo2_A 234 EVMKRYA 240 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776543
No 347
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=26.14 E-value=1.1e+02 Score=31.95 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHHHcCCEEEEEc---CH----HHHHHHhCCCCCccEEEEeCCCCCCCH
Q 002879 724 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVE---RG----KKATELLMPPHQFDACFMDIQMPEMDG 784 (871)
Q Consensus 724 ~~~ILvVdDn~---~n~~~l~~~L~~~g~~v~~a~---~g----~eAl~~l~~~~~~DlilmDi~MP~mdG 784 (871)
+++|+++|-+. .....+....++.|..+.... +. .++++.+. ...||+||+|. |+..+
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~-~~~~D~ViIDT--pg~~~ 193 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL-SEKMEIIIVDT--AGRHG 193 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH-HTTCSEEEEEC--CCSCC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH-hCCCCEEEEeC--CCCcc
Confidence 56899999883 333334444556677766543 22 24555542 25699999998 54444
No 348
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=25.95 E-value=1.2e+02 Score=28.63 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=40.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 777 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi 777 (871)
+.+++|-++..... ...|++.|..+..+.+..++++++. .+..|++++|.
T Consensus 110 L~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~-~g~~D~~~~~~ 159 (228)
T 2pyy_A 110 LPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQ-TKKADAVVFDA 159 (228)
T ss_dssp CTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHH-TTSSSEEEEEH
T ss_pred cCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHH-cCCCCEEEecH
Confidence 56789988887763 3456678999999999999999995 57899999974
No 349
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=25.93 E-value=1.7e+02 Score=30.24 Aligned_cols=71 Identities=15% Similarity=0.000 Sum_probs=49.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeCC
Q 002879 770 FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 849 (871)
Q Consensus 770 ~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP 849 (871)
.++|.+|..- .--..+.+++|++.- ...+||++==+-.+.++..+++++|+|..+.--
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~---------------------~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGL---------------------GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHS---------------------CTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhc---------------------CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999865 334468889998731 115799988788889999999999999998754
Q ss_pred --CC---HHHHHHHHhhh
Q 002879 850 --FE---AEQLYREVSRF 862 (871)
Q Consensus 850 --~~---~~~L~~~l~~~ 862 (871)
+. ++-+.+.+.+|
T Consensus 258 Aav~d~~Pelv~e~a~~~ 275 (286)
T 3vk5_A 258 ALEQPDWRSALAEIAGRR 275 (286)
T ss_dssp GGSSTTHHHHHHHHHC--
T ss_pred hhhcCCCHHHHHHHHHhC
Confidence 22 23444555444
No 350
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=25.61 E-value=1.8e+02 Score=28.93 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=26.9
Q ss_pred CCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 818 FHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 818 ~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
..+||++...-.+.++.++++++|+|..+.
T Consensus 74 ~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 368999999999999999999999999765
No 351
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=25.35 E-value=2.4e+02 Score=28.05 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=53.1
Q ss_pred HHHHcCCEEEEEcCH---HHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhhccccccccccccchhhh
Q 002879 743 GLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSIEAY 812 (871)
Q Consensus 743 ~L~~~g~~v~~a~~g---~eAl~~l~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 812 (871)
.+++.|..+-.+-+. .+.++.+..-...|+|+.=---|+.+| ++-++++|++-
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~----------------- 171 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY----------------- 171 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-----------------
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc-----------------
Confidence 667789877766543 344444422124788865444476665 44445555431
Q ss_pred ccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 813 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 813 ~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
.+++ |.+.+....++..+|.++|+|.++.=
T Consensus 172 -----~~~~-I~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 172 -----KNLN-IQVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp -----TTCE-EEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred -----cCCe-EEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 1333 56788889999999999999988764
No 352
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=25.22 E-value=2.1e+02 Score=29.33 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=47.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcC-----CE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYG-----AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g-----~~-v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~ 793 (871)
.+|..||=++...+.++..+...+ -. -....|+.+.+... ...||+|++|.-.|.... -++.+.+++
T Consensus 103 ~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~ 180 (283)
T 2i7c_A 103 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYN 180 (283)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--CCCceEEEEcCCCCCCcchhhhHHHHHHHHHH
Confidence 589999999999999998886531 22 33567787766543 467999999986664322 366666665
Q ss_pred h
Q 002879 794 M 794 (871)
Q Consensus 794 ~ 794 (871)
.
T Consensus 181 ~ 181 (283)
T 2i7c_A 181 A 181 (283)
T ss_dssp H
T ss_pred h
Confidence 3
No 353
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=25.12 E-value=1.7e+02 Score=28.34 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=34.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 775 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~Dlilm 775 (871)
++|+|||=-.-|...+...|++.|++++.+.+.++. + .+|.|++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l-~------~~D~lil 46 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV-L------AADKLFL 46 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH-H------HCSEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH-h------CCCEEEE
Confidence 479999977777788899999999999998886542 2 2588876
No 354
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=24.49 E-value=96 Score=30.98 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEE--EEccCCCHHHHHHHHHcCCCEEEeCCC
Q 002879 783 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL--AMTADVIQATYEECLRSGMDGYVSKPF 850 (871)
Q Consensus 783 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pII--alTa~~~~~~~~~~~~~G~d~yl~KP~ 850 (871)
.|.+.++.||+. .+.|+. .|+.+. ....+.|.++|+|++..-..
T Consensus 49 ~g~~~v~~lr~~-----------------------~~~~~~vhlmv~dp-~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 49 IGPLIVDAIRPL-----------------------TKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp BCHHHHHHHGGG-----------------------CCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECS
T ss_pred hhHHHHHHHHhh-----------------------cCCcEEEEEEccCH-HHHHHHHHHcCCCEEEECcc
Confidence 367899999863 134555 677543 45678899999999866554
No 355
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=24.37 E-value=1.9e+02 Score=30.44 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHhh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIREM 794 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlilmDi~MP~md-----G~e~~~~IR~~ 794 (871)
+.+|.+||=++.....++..+... +-.+ ....|+.+.+..+ ....||+|++|.-.|... .-++.+.+++.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~ 189 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRG 189 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-CTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-cCCCCCEEEECCCCccccchhhhHHHHHHHHHHh
Confidence 348999999999999998887543 1223 3567888877654 246799999998655321 24666666653
No 356
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=24.33 E-value=25 Score=34.36 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=34.5
Q ss_pred EeCCCCC--CCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEE--EccCCCHHHHHHHHHcCCCEEEeCCC
Q 002879 775 MDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA--MTADVIQATYEECLRSGMDGYVSKPF 850 (871)
Q Consensus 775 mDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa--lTa~~~~~~~~~~~~~G~d~yl~KP~ 850 (871)
+++.+|- .+|.+.++.||+. .+..||++ ++.+......+.+.++|+|....-+.
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~----------------------~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKA----------------------HPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHH----------------------STTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred EEECcHHHHhhCHHHHHHHHHh----------------------CCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEecc
Confidence 4555542 4567778888763 12457774 55542233377888999998876665
Q ss_pred CH
Q 002879 851 EA 852 (871)
Q Consensus 851 ~~ 852 (871)
..
T Consensus 87 ~~ 88 (207)
T 3ajx_A 87 AD 88 (207)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 357
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=24.28 E-value=1.7e+02 Score=24.53 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=29.4
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHh
Q 002879 727 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 764 (871)
Q Consensus 727 ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l 764 (871)
+|+-|.+..-....+.-+...||+|.-+.+.++|+..+
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkiv 117 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIV 117 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHH
Confidence 34555556567778888888899999999999998876
No 358
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=24.08 E-value=1.7e+02 Score=28.94 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCE--EE-EEcCHHHHHHHhC----CCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLM----PPHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eAl~~l~----~~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
+.+|.-+|-++.....++..+++.|.. +. ...+..+.+..+. ....||+||+|...+ +-.++.+.+..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~ 169 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMK 169 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHH
Confidence 458999999999999999999988862 43 4567777665441 135799999996432 22344555544
No 359
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=23.94 E-value=1.4e+02 Score=28.25 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHH--cCCEEEEEcC--HHHHHHHhCCCCCccEEEEeC
Q 002879 723 LGRKILIVDDNNVNLKVAAAGLKR--YGAAVVCVER--GKKATELLMPPHQFDACFMDI 777 (871)
Q Consensus 723 ~~~~ILvVdDn~~n~~~l~~~L~~--~g~~v~~a~~--g~eAl~~l~~~~~~DlilmDi 777 (871)
.|+++|+||=++-. -+...+.. .++.+..+.. -.+.++.+. ..||+||+|.
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAASEKDVYGIRKDL--ADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCSHHHHHTHHHHT--TTSSEEEEEC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCcHHHHHHHHHhc--CCCCEEEEEC
Confidence 36789999987532 23334432 3455555443 233444443 3599999997
No 360
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=23.76 E-value=4.7e+02 Score=26.44 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=55.5
Q ss_pred CHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHH
Q 002879 756 RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 835 (871)
Q Consensus 756 ~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~ 835 (871)
+..+.+++.. ...+|.|++|++=-..+.-.+...++.... ...++++=....+..+..
T Consensus 25 ~~p~~~e~a~-~~g~D~vilDlEhav~~~~k~~~~l~a~~~---------------------~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 25 YNPDIVRIYA-EAGLDYFIVDCEHAAYTFREINHLVSVAKN---------------------AGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp CCTTHHHHHH-HTTCSEEEEESSSSCCCHHHHHHHHHHHHH---------------------HTCEEEEECSSCCHHHHH
T ss_pred CCHHHHHHHh-cCCcCEEEEeccCCCCCHHHHHHHHHHHhh---------------------cCCeEEEEeCCCCHHHHH
Confidence 3455555553 346999999999888887777777766421 023344433445667899
Q ss_pred HHHHcCCCEEEe-CCCCHHHHHHHHhh
Q 002879 836 ECLRSGMDGYVS-KPFEAEQLYREVSR 861 (871)
Q Consensus 836 ~~~~~G~d~yl~-KP~~~~~L~~~l~~ 861 (871)
.++++|+++.+. |--+.+++...++.
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~ 109 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRL 109 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHH
Confidence 999999998654 44466777666554
No 361
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=23.68 E-value=4.5e+02 Score=29.48 Aligned_cols=102 Identities=10% Similarity=0.091 Sum_probs=64.4
Q ss_pred CCeEEEEeCC----HHHHHHHHHHHHHcC-CEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC-----------CCCHH
Q 002879 724 GRKILIVDDN----NVNLKVAAAGLKRYG-AAVV--CVERGKKATELLMPPHQFDACFMDIQMP-----------EMDGF 785 (871)
Q Consensus 724 ~~~ILvVdDn----~~n~~~l~~~L~~~g-~~v~--~a~~g~eAl~~l~~~~~~DlilmDi~MP-----------~mdG~ 785 (871)
+-.++++|.. ......++.+-+.++ ..+. .+.+.+.|..+.. ...|.|...+.-- +...+
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~--aGad~i~vg~g~gsi~~~~~~~g~g~p~~ 345 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIE--AGANVVKVGIGPGSICTTRVVAGVGVPQL 345 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH--HTCSEEEECSSCSTTCCHHHHHCCCCCHH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHH--hCCCEEEECCCCccccccccccCCCCCcH
Confidence 3457777743 334445555555554 3444 4667777777653 4579888643211 12335
Q ss_pred HHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 786 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+++..+++.-+ ...+|||+--+-....+..+|+.+||+..+.
T Consensus 346 ~~l~~v~~~~~--------------------~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 346 TAVYDCATEAR--------------------KHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHH--------------------TTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHH--------------------hCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 55555544211 1258999988888999999999999999865
No 362
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=23.66 E-value=2.1e+02 Score=25.81 Aligned_cols=39 Identities=5% Similarity=0.181 Sum_probs=27.4
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR 857 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl~KP~~~~~L~~ 857 (871)
..+++++|+.........+-..|.+.|+..+-...+.+.
T Consensus 52 g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~ 90 (162)
T 2p9j_A 52 GITLAVISGRDSAPLITRLKELGVEEIYTGSYKKLEIYE 90 (162)
T ss_dssp TCEEEEEESCCCHHHHHHHHHTTCCEEEECC--CHHHHH
T ss_pred CCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCCHHHHH
Confidence 368999999888777777778899999865443444443
No 363
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=23.14 E-value=2.3e+02 Score=27.57 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=44.4
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCC--------CCCHHHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEE
Q 002879 754 VERGKKATELLMPPHQFDACFMDIQMP--------EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 825 (871)
Q Consensus 754 a~~g~eAl~~l~~~~~~DlilmDi~MP--------~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 825 (871)
+.+..++.... ...+|.|++..-.| ..-|++.++++++. ..++||++.
T Consensus 123 ~~t~~e~~~a~--~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~----------------------~~~~pvia~ 178 (227)
T 2tps_A 123 AHTMSEVKQAE--EDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ----------------------GISIPIVGI 178 (227)
T ss_dssp ECSHHHHHHHH--HHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT----------------------TCCCCEEEE
T ss_pred cCCHHHHHHHH--hCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh----------------------CCCCCEEEE
Confidence 46677765544 23589998622111 12367888888752 113788876
Q ss_pred ccCCCHHHHHHHHHcCCCEEEe
Q 002879 826 TADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 826 Ta~~~~~~~~~~~~~G~d~yl~ 847 (871)
-+-. .++..+++++|++++..
T Consensus 179 GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 179 GGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp SSCC-TTTSHHHHHTTCSEEEE
T ss_pred cCCC-HHHHHHHHHcCCCEEEE
Confidence 5544 78888899999998854
No 364
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=23.12 E-value=2.6e+02 Score=29.39 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=54.2
Q ss_pred HHHHHcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhhccccccccccccchhhhccC
Q 002879 742 AGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 815 (871)
Q Consensus 742 ~~L~~~g~~v~~-a~~g~eAl~~l~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 815 (871)
..+++.|..+.. +.+.++|..+.. ...|.|+.+-.-. ....+++++++++.
T Consensus 104 ~~l~~~g~~v~~~v~~~~~a~~~~~--~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~--------------------- 160 (332)
T 2z6i_A 104 ERFHEAGIIVIPVVPSVALAKRMEK--IGADAVIAEGMEAGGHIGKLTTMTLVRQVATA--------------------- 160 (332)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---------------------
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEEECCCCCCCCCCccHHHHHHHHHHh---------------------
Confidence 334456766553 566666655542 3478888763211 13457888888762
Q ss_pred CCCCccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 816 SNFHVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 816 ~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
..+|||+--+-.+.++..+++..|+|+..
T Consensus 161 --~~iPViaaGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 161 --ISIPVIAAGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp --CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred --cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 25899988887789999999999999875
No 365
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.92 E-value=4e+02 Score=25.59 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=47.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEE-EcCHHHHHHHhCC-CCCccEEEEe----------CCCC----CCCHHHH
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVC-VERGKKATELLMP-PHQFDACFMD----------IQMP----EMDGFEA 787 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~-a~~g~eAl~~l~~-~~~~DlilmD----------i~MP----~mdG~e~ 787 (871)
.++|+++--.+.....+..+..+++.++.. ..+..+|++..+. ...+|+|+.- +..| ..+|++.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Di 83 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDT 83 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHH
Confidence 357888888888888888888887766653 4556666665422 3567888732 2334 3578888
Q ss_pred HHHHHhh
Q 002879 788 TKIIREM 794 (871)
Q Consensus 788 ~~~IR~~ 794 (871)
++.|.+.
T Consensus 84 l~al~~a 90 (196)
T 2q5c_A 84 MRAVYNA 90 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877764
No 366
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=22.38 E-value=7.3e+02 Score=26.44 Aligned_cols=96 Identities=14% Similarity=-0.051 Sum_probs=58.2
Q ss_pred CeEEEEeCC----HHHHHHHHHHHHHc-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCCC------------HH
Q 002879 725 RKILIVDDN----NVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEMD------------GF 785 (871)
Q Consensus 725 ~~ILvVdDn----~~n~~~l~~~L~~~-g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi~MP~md------------G~ 785 (871)
..++.+|=. ....+.++.+=+.. +..|.. +.+.++|..+.. ...|.|...+. |+.. .+
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~--aGaD~I~Vg~g-~G~~~~tr~~~g~g~p~l 189 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLAS--CGADIIKAGIG-GGSVCSTRIKTGFGVPML 189 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHH--TTCSEEEECCS-SSSCHHHHHHHCCCCCHH
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHH--cCCCEEEEcCC-CCcCccccccCCccHHHH
Confidence 357777622 22233333332333 566665 788888888763 45899988543 3221 22
Q ss_pred HHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 786 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 786 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
+++.++.+ ... |||+--+-....+..+++.+|||....
T Consensus 190 ~aI~~~~~-----------------------~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 190 TCIQDCSR-----------------------ADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHTT-----------------------SSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH-----------------------hCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 23332221 011 999888888899999999999998753
No 367
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=22.21 E-value=2.3e+02 Score=27.91 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.4
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEE
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYV 846 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl 846 (871)
.+||++...-.+.++.++++++|+|.+.
T Consensus 77 ~ipvi~~g~i~~~~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 77 SIPVLVGGGVRSLEDATTLFRAGADKVS 104 (253)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 5899988877788889999999999887
No 368
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=22.19 E-value=1.9e+02 Score=28.00 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=41.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCE--EE-EEcCHHHHHHHhCC---CCCccEEEEeCCC
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQM 779 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~--v~-~a~~g~eAl~~l~~---~~~~DlilmDi~M 779 (871)
+.+|.-||=++.....++..+++.|.. +. ...+..+.+..+.. ...||+||+|...
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~ 144 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWK 144 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCc
Confidence 458999999999999999999988752 43 45676666655421 1579999999744
No 369
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=22.18 E-value=2.8e+02 Score=26.40 Aligned_cols=67 Identities=7% Similarity=0.005 Sum_probs=46.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC-EEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRYGA-AVVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~g~-~v~~-a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
.+|.-||=++.....++..++..|. .+.. ..|..+.+.. ....||+|++|.-....+-.++.+.+++
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh--cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 4899999999999999999988875 4443 3454443322 2457999999854333445566677664
No 370
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=21.98 E-value=1.6e+02 Score=30.81 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=23.2
Q ss_pred CccEE--EEccCCCHHHHHHHHHcCCCEEEe
Q 002879 819 HVPIL--AMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 819 ~~pII--alTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
.+||| +-.+-...++..+++++|+|+++.
T Consensus 207 ~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 207 RLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp SCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred CCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 46776 555555899999999999999975
No 371
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=21.96 E-value=1.1e+02 Score=30.06 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=25.9
Q ss_pred CccEEEEccCCCHHHHHHHHHcCCCEEEeC
Q 002879 819 HVPILAMTADVIQATYEECLRSGMDGYVSK 848 (871)
Q Consensus 819 ~~pIIalTa~~~~~~~~~~~~~G~d~yl~K 848 (871)
.+||++.-+-.+.++..+++++|+|+++.=
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 589998887779999999999999998753
No 372
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=21.76 E-value=66 Score=33.16 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccccccccccccchhhhccCCCCCccEEEEccCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 002879 785 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYRE 858 (871)
Q Consensus 785 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~------~~~~~~~~~~G~d~yl~KP~~~~~L~~~ 858 (871)
++.+++||+ ..++||++|+-... ......|.++|+|+++.--+..+++...
T Consensus 80 ~~~v~~ir~-----------------------~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~ 136 (271)
T 1ujp_A 80 LELVREVRA-----------------------LTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGL 136 (271)
T ss_dssp HHHHHHHHH-----------------------HCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHH
T ss_pred HHHHHHHHh-----------------------cCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHH
Q ss_pred Hhhh
Q 002879 859 VSRF 862 (871)
Q Consensus 859 l~~~ 862 (871)
+...
T Consensus 137 ~~~~ 140 (271)
T 1ujp_A 137 VRLA 140 (271)
T ss_dssp HHHH
T ss_pred HHHH
No 373
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=21.69 E-value=1.9e+02 Score=29.52 Aligned_cols=68 Identities=18% Similarity=0.067 Sum_probs=46.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc--C---C-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC-----CHHHHHHHHHh
Q 002879 725 RKILIVDDNNVNLKVAAAGLKRY--G---A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEM-----DGFEATKIIRE 793 (871)
Q Consensus 725 ~~ILvVdDn~~n~~~l~~~L~~~--g---~-~v~~a~~g~eAl~~l~~~~~~DlilmDi~MP~m-----dG~e~~~~IR~ 793 (871)
.+|..||=++...++++..+... + - .-....|+.+.+... ...||+|++|.--|.. ..-++.+.+++
T Consensus 100 ~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~ 177 (275)
T 1iy9_A 100 KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAK 177 (275)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCeeEEEECCCCCCCcchhhhHHHHHHHHHH
Confidence 58999999999999999887541 1 1 233566777766542 4679999999866532 12456666655
Q ss_pred h
Q 002879 794 M 794 (871)
Q Consensus 794 ~ 794 (871)
.
T Consensus 178 ~ 178 (275)
T 1iy9_A 178 A 178 (275)
T ss_dssp H
T ss_pred h
Confidence 3
No 374
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=21.41 E-value=1.8e+02 Score=28.48 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=45.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEE-EEcCHHHHHHHhCC-C--CCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP-P--HQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eAl~~l~~-~--~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
+.+|..+|-++.....++..+++.|. .+. ...+..+.+..+.. . ..||+||+|...+ +-.++.+.+..
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 170 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR--NYPRYYEIGLN 170 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHH--HHHHHHHHHHH
Confidence 35899999999999999999988775 233 45666666554421 2 5799999996422 22334455543
No 375
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=21.37 E-value=2.9e+02 Score=26.57 Aligned_cols=68 Identities=7% Similarity=0.090 Sum_probs=46.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEE-EEcCHHHHHHHhCCC---CCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eAl~~l~~~---~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
+.+|..+|-++.....++..++..|. .+. ...+..+.+..+... ..||+|++|.. ..+-.++.+.+..
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~ 167 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQ 167 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHH
Confidence 45899999999999999999988875 343 345666655444211 57999999864 3333445555554
No 376
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=21.31 E-value=4.2e+02 Score=23.22 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=53.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhccccccc
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 802 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g-~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 802 (871)
|.+|.++|.++.....+ ...|+.+...+-. .+.++.+ .-...|+|+.-.. ....-..++..+|+.
T Consensus 29 g~~V~~id~~~~~~~~~----~~~~~~~~~gd~~~~~~l~~~-~~~~~d~vi~~~~-~~~~n~~~~~~a~~~-------- 94 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELL----EDEGFDAVIADPTDESFYRSL-DLEGVSAVLITGS-DDEFNLKILKALRSV-------- 94 (141)
T ss_dssp TCCEEEEESCHHHHHHH----HHTTCEEEECCTTCHHHHHHS-CCTTCSEEEECCS-CHHHHHHHHHHHHHH--------
T ss_pred CCeEEEEECCHHHHHHH----HHCCCcEEECCCCCHHHHHhC-CcccCCEEEEecC-CHHHHHHHHHHHHHh--------
Confidence 45799999998654433 3457776654322 3345544 2346899987543 111123455555553
Q ss_pred cccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEEe
Q 002879 803 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 847 (871)
Q Consensus 803 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl~ 847 (871)
. ...||+...+ .+......++|+|..+.
T Consensus 95 --------------~-~~~iia~~~~--~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 95 --------------S-DVYAIVRVSS--PKKKEEFEEAGANLVVL 122 (141)
T ss_dssp --------------C-CCCEEEEESC--GGGHHHHHHTTCSEEEE
T ss_pred --------------C-CceEEEEEcC--hhHHHHHHHcCCCEEEC
Confidence 1 3457766644 34556677899986654
No 377
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=21.02 E-value=1.7e+02 Score=30.64 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=43.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--C---CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHH
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRY--G---AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIR 792 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~--g---~~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG-----~e~~~~IR 792 (871)
..+|..||=++.....++..+... | -.+. ...|+.+.+.. ....||+|++|.--|.... -++.+.++
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~ 209 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDVIITDSSDPVGPAESLFGQSYYELLR 209 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEEEEECCC-------------HHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 358999999999999999888653 2 2233 45677776654 2467999999986543211 35556665
Q ss_pred h
Q 002879 793 E 793 (871)
Q Consensus 793 ~ 793 (871)
+
T Consensus 210 ~ 210 (314)
T 2b2c_A 210 D 210 (314)
T ss_dssp H
T ss_pred h
Confidence 5
No 378
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=20.89 E-value=2.3e+02 Score=32.57 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=42.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCC
Q 002879 724 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMP 780 (871)
Q Consensus 724 ~~~ILvV----dDn~~n~~~l~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlilmDi~MP 780 (871)
+.+||++ |-+..-..++..+|+..||+|+.. ....+.++.+. .+.+|+|.+-..|.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~-~~~~diVgLS~l~t 160 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAK-EVNADLIGLSGLIT 160 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHH-HHTCSEEEEECCST
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEEecCC
Confidence 3578888 677788889999999999999754 34555555553 46799999998775
No 379
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=20.59 E-value=2e+02 Score=28.75 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=47.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEE-EEcCHHHHHHHhC----CCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLM----PPHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eAl~~l~----~~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
+.+|..+|-++.....++..+++.|. .+. ...+..+.+..+. ....||+||+|... .+-..+.+.+..
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~ 178 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRLID 178 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHHHH
Confidence 45899999999999999999998886 343 4567766655441 03579999999653 233445555544
No 380
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=20.56 E-value=3.1e+02 Score=26.06 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=45.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v~-~a~~g~eAl~~l~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
+.+|..||-++.....++..+++.|. .+. ...+..+.+..+ .. ||+|++|.. ..+-.++.+.++.
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~-fD~v~~~~~--~~~~~~~l~~~~~ 148 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ--RD-IDILFMDCD--VFNGADVLERMNR 148 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC--CS-EEEEEEETT--TSCHHHHHHHHGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC--CC-CCEEEEcCC--hhhhHHHHHHHHH
Confidence 45899999999999999999988775 243 445665544433 34 999999954 3444556666654
No 381
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.49 E-value=3.3e+02 Score=30.50 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHc-CCEEE--EEcCHHHHHHHhCCCCCccEEEEeC--------------CCCCCCHHHHHHHHHhhhcc
Q 002879 735 VNLKVAAAGLKRY-GAAVV--CVERGKKATELLMPPHQFDACFMDI--------------QMPEMDGFEATKIIREMEHN 797 (871)
Q Consensus 735 ~n~~~l~~~L~~~-g~~v~--~a~~g~eAl~~l~~~~~~DlilmDi--------------~MP~mdG~e~~~~IR~~~~~ 797 (871)
...+.++.+-+.. +..|. .+.+.++|..+.. ...|.|..-. .+|....+..++++++.
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~--aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~--- 356 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLID--AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR--- 356 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH--HTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG---
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHH--cCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh---
Confidence 3445555555555 56555 3677777776653 3478776632 12222234555555431
Q ss_pred ccccccccccchhhhccCCCCCccEEEEccCCCHHHHHHHHHcCCCEEE-eCCC
Q 002879 798 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-SKPF 850 (871)
Q Consensus 798 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~yl-~KP~ 850 (871)
..+|||+--+-....+..+++.+|||... ..||
T Consensus 357 --------------------~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 357 --------------------FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp --------------------GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred --------------------CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 25899998888889999999999999764 3444
No 382
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=20.46 E-value=1.2e+02 Score=30.35 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCC----CC-CCHHHHHHHHHhhhccccccccccccchh
Q 002879 738 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQM----PE-MDGFEATKIIREMEHNFNNRIRRGEVSIE 810 (871)
Q Consensus 738 ~~l~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~DlilmDi~M----P~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 810 (871)
...-..|++.|+.+.. +..|...+..+. .-++|.|=+|-.+ .. .....+++.|..+-+.
T Consensus 142 ~~~l~~l~~~G~~ialDdfG~g~ssl~~L~-~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~------------- 207 (259)
T 3s83_A 142 AVILKTLRDAGAGLALDDFGTGFSSLSYLT-RLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQD------------- 207 (259)
T ss_dssp HHHHHHHHHHTCEEEEECC---CHHHHHHH-HSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhHHHHH-hCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHH-------------
Confidence 3345667888987665 456667777774 4679999999522 11 1223344444443221
Q ss_pred hhccCCCCCccEEEEccCCCHHHHHHHHHcCCCE----EEeCCCCHHHHHHHHhhhC
Q 002879 811 AYENVSNFHVPILAMTADVIQATYEECLRSGMDG----YVSKPFEAEQLYREVSRFF 863 (871)
Q Consensus 811 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~~G~d~----yl~KP~~~~~L~~~l~~~~ 863 (871)
..+.+| ..+-.+.++...+.+.|+|- |+.||...+++...+.+..
T Consensus 208 -------~g~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~~~ 256 (259)
T 3s83_A 208 -------LDLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAY 256 (259)
T ss_dssp -------TTCEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHHSC
T ss_pred -------CCCeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHHhc
Confidence 134444 56667788888899999983 3789999999988887653
No 383
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=20.36 E-value=2e+02 Score=27.64 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=46.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--EE-EEEcCHHHHHHHhCC--CCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002879 724 GRKILIVDDNNVNLKVAAAGLKRYGA--AV-VCVERGKKATELLMP--PHQFDACFMDIQMPEMDGFEATKIIRE 793 (871)
Q Consensus 724 ~~~ILvVdDn~~n~~~l~~~L~~~g~--~v-~~a~~g~eAl~~l~~--~~~~DlilmDi~MP~mdG~e~~~~IR~ 793 (871)
+.+|.-+|=++.....++..+++.|. .+ ....+..+.+..+.. ...||+|++|...+ +-.++.+.+.+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~ 155 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALK 155 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHH
Confidence 45899999999999999999998875 23 345677666554421 14699999997532 22344555544
No 384
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.34 E-value=1.2e+02 Score=31.47 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=40.3
Q ss_pred CeEEEEeCC-----HHHHHHHHHHHHHcC-CEEEEEcCHH-----HHHHHhCCCCCccEEEEeCCCCCCCH
Q 002879 725 RKILIVDDN-----NVNLKVAAAGLKRYG-AAVVCVERGK-----KATELLMPPHQFDACFMDIQMPEMDG 784 (871)
Q Consensus 725 ~~ILvVdDn-----~~n~~~l~~~L~~~g-~~v~~a~~g~-----eAl~~l~~~~~~DlilmDi~MP~mdG 784 (871)
.|||||.-. +.....+..+|++.| ++|+.+.+.. +.+. ..-..||+|+++..+...+-
T Consensus 5 ~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~--~~L~~~D~vV~~~~~~~l~~ 73 (281)
T 4e5v_A 5 IKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV--LDFSPYQLVVLDYNGDSWPE 73 (281)
T ss_dssp EEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC--CCCTTCSEEEECCCSSCCCH
T ss_pred eEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh--hhhhcCCEEEEeCCCCcCCH
Confidence 588998762 455678899999988 9999998741 2221 11236999999887665543
No 385
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=20.32 E-value=1.6e+02 Score=28.26 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=41.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002879 722 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 777 (871)
Q Consensus 722 ~~~~~ILvVdDn~~n~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlilmDi 777 (871)
+.|++|-++..... ...+...+...|..+..+.+..++++++. .+..|++++|.
T Consensus 109 L~g~~v~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~G~vDa~~~~~ 162 (239)
T 1lst_A 109 LKGKHVGVLQGSTQ-EAYANDNWRTKGVDVVAYANQDLIYSDLT-AGRLDAALQDE 162 (239)
T ss_dssp HTTCEEEEETTSHH-HHHHHHHTGGGTCEEEEESSHHHHHHHHH-TTSCSEEEEEH
T ss_pred hCCCEEEEEcCccH-HHHHHHhcccCCCeEEEcCCHHHHHHHHH-cCCCCEEEeCc
Confidence 45788888876653 44455556556889999999999999995 57899999974
Done!