BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002880
(871 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 23/211 (10%)
Query: 640 YVRKRDGL-NNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKI--CQKYIEFPALFQ- 695
Y R+R+G N+WI K A+ ++ + S ++ ++ ++ QKY+E P L +
Sbjct: 135 YNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEP 194
Query: 696 -GRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFT--------V 746
RKFD+R VLV + + ++ V +R ++ PY + +F + H T
Sbjct: 195 GHRKFDIRSWVLVDHLYNIYLYREGV--LRTSSEPY--NSANFQDKTCHLTNHCIQKEYS 250
Query: 747 MNYGR--RFNHMNTPDFVRGF-EAEHQVKWLEIHQRVKNTIRSVFEA--AAVAHPEMHSS 801
NYGR N M +F + +A + I ++K+ IRS A++ +H
Sbjct: 251 KNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHY- 309
Query: 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCTR 832
+S ++G D M+D + L+EV P C +
Sbjct: 310 QSFQLFGFDFMVDEELKVWLIEVNGAPACAQ 340
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 642 RKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKI--CQKYIEFPALFQ--GR 697
+K + N+WI K + A+ ++ D + ++ ++ ++ QKY+E P L + R
Sbjct: 141 KKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHR 200
Query: 698 KFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFT--------VMNY 749
KFD+R VLV + + ++ V +R ++ PYS +F + +H T NY
Sbjct: 201 KFDIRSWVLVDNQYNIYLYREGV--LRTSSEPYS--DTNFQDMTSHLTNHCIQKEHSKNY 256
Query: 750 GR--RFNHMNTPDFVRGFEAEHQVKWLE--IHQRVKNTIR---SVFEAA-AVAHPEMHSS 801
GR N M +F + + LE I ++K IR S E A + + HS
Sbjct: 257 GRYEEGNEMFFEEFNQYLVTSLNIN-LENSILCQIKEIIRVCLSCLEPAISTKYLPYHSF 315
Query: 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCTR 832
+ ++G D M+D + + L+EV P C +
Sbjct: 316 Q---LFGFDFMVDKNLKVWLIEVNGAPACAQ 343
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 29/154 (18%)
Query: 162 EDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLK-NLRALWLNNNPVL 220
++ ++G+ L+S KFP LQ L+L +ET + + + L+ L L++N
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN--- 238
Query: 221 KKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
+ DA G P + + ++N L F G K P L + ++
Sbjct: 239 -----SLRDA--AGAPSCDWPSQLNSLN-----LSFTGL---KQVPKGLPAK------LS 277
Query: 281 SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314
LDLS +N +++ SP E+P + +L+++GNP
Sbjct: 278 VLDLS----YNRLDRNPSPDELPQVGNLSLKGNP 307
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
P L L L N+L TV Q L LR LWL NNP+
Sbjct: 82 LPSLNTLELFDNRLTTVP--TQAFEYLSKLRELWLRNNPI 119
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
P L L L N+L TV Q L LR LWL NNP+
Sbjct: 82 LPSLNTLELFDNRLTTVP--TQAFEYLSKLRELWLRNNPI 119
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
++P+L+HLN+ GN L+ S LE LK CL+SL
Sbjct: 93 KLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSL 125
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 40/219 (18%)
Query: 116 TDIEEVDAVKGVLHENGTKSNVEDI--LESEIHNATEKGD----GTVKWLELEDADIGDD 169
T ++E+D H NG S +E + L+ + NA + L D I +
Sbjct: 277 TRVQELDLTAA--HLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 170 MLLSLNLSS----KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH 225
M L+L + K +LQ L L + +E + ++ L++L+ L L+ N L
Sbjct: 335 MR-KLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG---- 389
Query: 226 CMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLS 285
+ED + CP+LE+ + FT ++ K P S P Q++ L +
Sbjct: 390 -LEDQAFKECPQLELLDVAFT------------HLHVKA-PHS------PFQNLHLLRVL 429
Query: 286 N--RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRE 322
N C+ + N+ A + L HLN++GN + S+ +
Sbjct: 430 NLSHCLLDTSNQHL-LAGLQDLRHLNLQGNSFQDGSISK 467
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 122 DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSS--- 178
D + VL G +S+ D++ I + L + + +I + LLSLNLS+
Sbjct: 120 DGSQQVLDLKGLRSD-PDLVAQNIDVVLNRRSCMAATLRIIEENIPE--LLSLNLSNNRL 176
Query: 179 -----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWLNNNPVLKKCDH 225
K P+L+ L+L GN+L++ +E+ K+K L+ LWL+ N + CD
Sbjct: 177 YRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWLDGNSL---CDT 229
Query: 226 CME-----DAILQGCPKL 238
+ AI + PKL
Sbjct: 230 FRDQSTYISAIRERFPKL 247
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 28/89 (31%)
Query: 171 LLSLNLSS--------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWL 214
LLSLNLS+ K P+L+ L+L GN+L++ +E+ K+K L+ LWL
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWL 227
Query: 215 NNNPVLKKCDHCME-----DAILQGCPKL 238
+ N + CD + AI + PKL
Sbjct: 228 DGNSL---CDTFRDQSTYISAIRERFPKL 253
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 122 DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSS--- 178
D + VL G +S+ D++ I + L + + +I + LLSLNLS+
Sbjct: 120 DGSQQVLDLKGLRSD-PDLVAQNIDVVLNRRSCMAATLRIIEENIPE--LLSLNLSNNRL 176
Query: 179 -----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWLNNNPVLKKCDH 225
K P+L+ L+L GN+L++ +E+ K+K L+ LWL+ N + CD
Sbjct: 177 YRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWLDGNSL---CDT 229
Query: 226 CME-----DAILQGCPKL 238
+ AI + PKL
Sbjct: 230 FRDQSTYISAIRERFPKL 247
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 28/89 (31%)
Query: 171 LLSLNLSS--------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWL 214
LLSLNLS+ K P+L+ L+L GN+L++ +E+ K+K L+ LWL
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWL 227
Query: 215 NNNPVLKKCDHCME-----DAILQGCPKL 238
+ N + CD + AI + PKL
Sbjct: 228 DGNSL---CDTFRDQSTYISAIRERFPKL 253
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 146 HNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTK 205
HN +G V +LE +G++ + + + S+ L LSL N++ + + + +TK
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI-VPLARLTK 177
Query: 206 LKNL 209
L+NL
Sbjct: 178 LQNL 181
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
L+ K P+L+ L+L GNK++ + I + + KL+NL++L L N
Sbjct: 88 LAEKCPNLKHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFN 127
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 20/63 (31%)
Query: 171 LLSLNLSS--------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLR--ALWL 214
LLSLNLS+ K P+L+ L+L GN+L++ +E+ K+K L+ LWL
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGLKLEELWL 227
Query: 215 NNN 217
+ N
Sbjct: 228 DGN 230
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 161 LEDADIGDDMLLSL--NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
LE + G + L + + K P L+ L+L N+L++V + +L +L+ +WL+ NP
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI--FDRLTSLQKIWLHTNP 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 146 HNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTK 205
HN +G V +LE +G++ + + + S+ L LSL N++ + + + +TK
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTK 197
Query: 206 LKNL 209
L+NL
Sbjct: 198 LQNL 201
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 146 HNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTK 205
HN +G V +LE +G++ + + + S+ L LSL N++ + + + +TK
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTK 197
Query: 206 LKNL 209
L+NL
Sbjct: 198 LQNL 201
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 146 HNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTK 205
HN +G V +LE +G++ + + + S+ L LSL N++ + + + +TK
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTK 197
Query: 206 LKNL 209
L+NL
Sbjct: 198 LQNL 201
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 146 HNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTK 205
HN +G V +LE +G++ + + + S+ L LSL N++ + + + +TK
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTK 177
Query: 206 LKNL 209
L+NL
Sbjct: 178 LQNL 181
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 146 HNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTK 205
HN +G V +LE +G++ + + + S+ L LSL N++ + + + +TK
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTK 174
Query: 206 LKNL 209
L+NL
Sbjct: 175 LQNL 178
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
L S+ LDLS+ + +L + F P + SL +LN+ GNP + V L L L+
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGP--LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 155
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
L S+ LDLS+ + +L + F P + SL +LN+ GNP + V L L L+
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGP--LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,489,371
Number of Sequences: 62578
Number of extensions: 1114540
Number of successful extensions: 2506
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2473
Number of HSP's gapped (non-prelim): 69
length of query: 871
length of database: 14,973,337
effective HSP length: 107
effective length of query: 764
effective length of database: 8,277,491
effective search space: 6324003124
effective search space used: 6324003124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)