Query 002880
Match_columns 871
No_of_seqs 457 out of 1541
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 12:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2155 Tubulin-tyrosine ligas 100.0 4E-146 9E-151 1167.3 26.4 617 5-871 1-631 (631)
2 PF03133 TTL: Tubulin-tyrosine 100.0 3.8E-53 8.3E-58 462.6 6.3 261 588-860 5-284 (292)
3 KOG2156 Tubulin-tyrosine ligas 100.0 7.5E-49 1.6E-53 429.0 15.8 283 549-843 208-515 (662)
4 KOG2157 Predicted tubulin-tyro 100.0 2.8E-40 6.1E-45 374.7 19.2 306 538-860 73-425 (497)
5 KOG2158 Tubulin-tyrosine ligas 100.0 6.5E-32 1.4E-36 293.3 10.3 240 590-840 172-438 (565)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.8 3.5E-18 7.6E-23 184.1 20.5 199 601-836 15-241 (262)
7 KOG3207 Beta-tubulin folding c 99.4 1.8E-13 4E-18 150.7 2.1 229 154-407 121-389 (505)
8 KOG0444 Cytoskeletal regulator 99.2 2.3E-12 4.9E-17 146.0 2.0 229 90-346 40-314 (1255)
9 PF14580 LRR_9: Leucine-rich r 99.2 2.5E-12 5.3E-17 130.2 1.6 90 276-370 63-154 (175)
10 PLN00113 leucine-rich repeat r 99.2 2.3E-11 5E-16 154.0 7.1 192 156-367 382-579 (968)
11 KOG4194 Membrane glycoprotein 99.2 1.7E-11 3.7E-16 138.8 4.1 155 154-320 173-334 (873)
12 PLN00113 leucine-rich repeat r 99.1 6.7E-11 1.5E-15 149.8 8.0 201 97-339 85-292 (968)
13 KOG0617 Ras suppressor protein 99.0 1.8E-11 3.9E-16 120.4 -2.2 157 154-347 33-195 (264)
14 KOG4194 Membrane glycoprotein 99.0 8.9E-11 1.9E-15 133.1 2.3 168 156-339 151-325 (873)
15 PF14580 LRR_9: Leucine-rich r 99.0 4.1E-10 9E-15 114.0 4.5 129 154-339 19-148 (175)
16 KOG0444 Cytoskeletal regulator 98.9 4.1E-10 9E-15 128.1 2.0 192 156-407 247-455 (1255)
17 KOG2982 Uncharacterized conser 98.8 1.7E-09 3.6E-14 114.7 4.2 203 156-369 47-292 (418)
18 cd00116 LRR_RI Leucine-rich re 98.8 9.8E-09 2.1E-13 112.7 10.2 65 156-220 110-178 (319)
19 KOG1859 Leucine-rich repeat pr 98.8 2.1E-10 4.5E-15 132.8 -4.3 172 93-320 123-296 (1096)
20 KOG0472 Leucine-rich repeat pr 98.8 2.2E-09 4.7E-14 117.7 2.4 191 90-386 370-564 (565)
21 PRK15387 E3 ubiquitin-protein 98.7 1.2E-08 2.5E-13 124.3 7.5 30 25-54 61-101 (788)
22 PRK15387 E3 ubiquitin-protein 98.7 7.5E-09 1.6E-13 125.9 5.9 73 276-367 381-453 (788)
23 PF08443 RimK: RimK-like ATP-g 98.7 3.8E-08 8.2E-13 101.4 10.0 88 604-706 3-97 (190)
24 KOG1259 Nischarin, modulator o 98.7 1.4E-09 3E-14 115.2 -0.7 141 155-357 285-427 (490)
25 cd00116 LRR_RI Leucine-rich re 98.7 2E-08 4.4E-13 110.2 7.2 89 156-246 25-118 (319)
26 TIGR00768 rimK_fam alpha-L-glu 98.7 1E-07 2.2E-12 103.1 12.5 89 601-706 85-184 (277)
27 KOG0618 Serine/threonine phosp 98.7 5.5E-09 1.2E-13 124.5 0.7 244 72-341 227-510 (1081)
28 KOG1259 Nischarin, modulator o 98.6 9.3E-09 2E-13 109.1 1.8 108 154-319 307-415 (490)
29 TIGR02144 LysX_arch Lysine bio 98.6 9.7E-07 2.1E-11 96.0 14.8 144 546-706 11-183 (280)
30 KOG0617 Ras suppressor protein 98.5 8.1E-09 1.8E-13 102.0 -1.8 188 179-414 31-240 (264)
31 KOG3207 Beta-tubulin folding c 98.4 3.2E-08 7E-13 109.9 -0.9 144 154-319 197-342 (505)
32 KOG0472 Leucine-rich repeat pr 98.4 1.8E-08 3.8E-13 110.7 -3.0 198 91-339 77-283 (565)
33 PF13535 ATP-grasp_4: ATP-gras 98.4 4.5E-06 9.8E-11 84.2 14.4 88 602-706 2-100 (184)
34 KOG0618 Serine/threonine phosp 98.4 5.2E-08 1.1E-12 116.3 0.2 145 156-315 361-512 (1081)
35 PLN03150 hypothetical protein; 98.4 2.4E-07 5.2E-12 112.0 5.8 104 182-339 419-523 (623)
36 PLN03210 Resistant to P. syrin 98.4 1.1E-06 2.4E-11 113.6 10.7 56 275-340 823-878 (1153)
37 PRK01372 ddl D-alanine--D-alan 98.3 1.8E-05 3.9E-10 87.3 18.4 173 603-834 97-276 (304)
38 PRK10446 ribosomal protein S6 98.3 3E-06 6.5E-11 93.5 12.2 165 602-832 97-269 (300)
39 PRK15370 E3 ubiquitin-protein 98.3 5.6E-07 1.2E-11 110.1 7.0 186 92-339 209-396 (754)
40 PLN03210 Resistant to P. syrin 98.3 1.1E-06 2.3E-11 113.6 8.7 164 154-339 634-833 (1153)
41 TIGR02291 rimK_rel_E_lig alpha 98.3 7E-06 1.5E-10 90.6 13.1 27 805-831 247-273 (317)
42 PRK01966 ddl D-alanyl-alanine 98.3 8.5E-06 1.8E-10 91.3 13.9 142 648-836 162-309 (333)
43 PRK14571 D-alanyl-alanine synt 98.3 1.2E-05 2.7E-10 88.6 14.9 143 648-836 125-273 (299)
44 PF13855 LRR_8: Leucine rich r 98.3 7.2E-07 1.6E-11 74.3 3.6 38 276-315 24-61 (61)
45 COG0189 RimK Glutathione synth 98.2 6.4E-06 1.4E-10 91.5 11.4 181 589-833 104-294 (318)
46 PRK14568 vanB D-alanine--D-lac 98.2 1.5E-05 3.3E-10 89.7 14.0 148 648-836 165-318 (343)
47 KOG2120 SCF ubiquitin ligase, 98.2 1.9E-07 4E-12 99.5 -1.9 185 156-366 187-373 (419)
48 PRK05246 glutathione synthetas 98.2 1.9E-05 4.2E-10 87.8 13.9 96 590-706 110-214 (316)
49 PF07478 Dala_Dala_lig_C: D-al 98.2 9.6E-06 2.1E-10 84.6 10.6 142 648-836 33-183 (203)
50 PLN02941 inositol-tetrakisphos 98.1 2.6E-05 5.6E-10 86.7 13.9 148 550-708 41-207 (328)
51 TIGR01205 D_ala_D_alaTIGR D-al 98.1 6E-05 1.3E-09 83.5 16.8 177 603-834 104-291 (315)
52 PLN03150 hypothetical protein; 98.1 2.8E-06 6.1E-11 102.9 6.7 110 155-316 419-528 (623)
53 PRK15370 E3 ubiquitin-protein 98.1 4.4E-06 9.5E-11 102.4 7.9 151 154-339 220-375 (754)
54 PRK14569 D-alanyl-alanine synt 98.1 3E-05 6.5E-10 85.5 13.8 140 648-836 130-273 (296)
55 KOG1644 U2-associated snRNP A' 98.1 2.2E-06 4.8E-11 87.2 3.0 89 276-369 63-153 (233)
56 PF02655 ATP-grasp_3: ATP-gras 98.0 1.2E-05 2.5E-10 80.7 7.7 70 603-689 2-71 (161)
57 KOG4237 Extracellular matrix p 98.0 1.5E-06 3.3E-11 95.8 0.8 69 154-227 67-136 (498)
58 KOG1909 Ran GTPase-activating 98.0 7.4E-06 1.6E-10 89.4 6.0 169 155-339 93-278 (382)
59 PF13855 LRR_8: Leucine rich r 98.0 3.9E-06 8.3E-11 69.9 2.9 57 277-339 1-57 (61)
60 PF02955 GSH-S_ATP: Prokaryoti 98.0 2.4E-05 5.3E-10 79.3 9.1 74 619-706 9-91 (173)
61 PRK14570 D-alanyl-alanine synt 98.0 0.0001 2.3E-09 83.6 15.0 147 648-836 171-324 (364)
62 PRK14572 D-alanyl-alanine synt 98.0 9.9E-05 2.1E-09 83.3 14.4 146 648-836 171-323 (347)
63 PRK12458 glutathione synthetas 97.9 0.00019 4.2E-09 80.6 16.0 98 591-706 116-221 (338)
64 TIGR01161 purK phosphoribosyla 97.9 0.00037 8E-09 78.7 17.4 84 595-689 86-178 (352)
65 KOG1909 Ran GTPase-activating 97.9 8.8E-06 1.9E-10 88.8 3.6 184 153-339 29-249 (382)
66 KOG4237 Extracellular matrix p 97.8 7.1E-06 1.5E-10 90.6 1.8 96 172-317 265-360 (498)
67 TIGR03103 trio_acet_GNAT GNAT- 97.8 0.00032 7E-09 83.7 14.7 84 603-706 296-387 (547)
68 KOG1859 Leucine-rich repeat pr 97.8 2.2E-06 4.7E-11 100.3 -3.6 66 154-222 109-202 (1096)
69 TIGR01380 glut_syn glutathione 97.7 0.00011 2.4E-09 81.7 10.0 73 620-706 132-213 (312)
70 KOG0531 Protein phosphatase 1, 97.7 9.4E-06 2E-10 93.6 0.9 121 156-339 74-194 (414)
71 PLN02257 phosphoribosylamine-- 97.6 0.0014 3.1E-08 76.1 17.2 77 602-689 100-189 (434)
72 TIGR01142 purT phosphoribosylg 97.6 0.0014 3.1E-08 74.6 16.9 42 648-689 136-186 (380)
73 KOG4579 Leucine-rich repeat (L 97.6 1.3E-05 2.8E-10 77.2 -0.0 101 185-339 31-131 (177)
74 COG4886 Leucine-rich repeat (L 97.6 8.5E-05 1.8E-09 84.8 6.6 63 154-223 116-179 (394)
75 COG4886 Leucine-rich repeat (L 97.6 8.1E-05 1.8E-09 84.9 5.7 145 155-339 141-285 (394)
76 PRK06019 phosphoribosylaminoim 97.6 0.0018 3.9E-08 73.8 16.5 85 594-689 87-180 (372)
77 PF14397 ATPgrasp_ST: Sugar-tr 97.5 0.00077 1.7E-08 74.0 12.8 212 594-833 16-265 (285)
78 COG1181 DdlA D-alanine-D-alani 97.5 0.00068 1.5E-08 75.3 12.4 140 645-836 139-294 (317)
79 PRK09288 purT phosphoribosylgl 97.5 0.0026 5.5E-08 72.9 17.1 78 602-689 111-199 (395)
80 PRK00885 phosphoribosylamine-- 97.5 0.0034 7.3E-08 72.7 18.1 77 602-689 100-189 (420)
81 PRK12767 carbamoyl phosphate s 97.5 0.0019 4.2E-08 71.8 15.6 93 600-705 107-200 (326)
82 KOG2123 Uncharacterized conser 97.5 2.5E-05 5.5E-10 82.9 0.0 64 301-367 61-128 (388)
83 PRK06849 hypothetical protein; 97.5 0.0019 4.1E-08 73.9 15.0 89 601-703 113-203 (389)
84 PRK13790 phosphoribosylamine-- 97.5 0.0019 4.2E-08 73.8 14.9 86 602-704 65-159 (379)
85 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.3E-09 57.5 3.2 39 181-222 1-39 (44)
86 KOG2739 Leucine-rich acidic nu 97.4 4.2E-05 9.2E-10 80.9 1.1 65 302-369 90-156 (260)
87 PF12799 LRR_4: Leucine Rich r 97.4 0.00011 2.3E-09 57.5 2.9 40 277-319 1-40 (44)
88 KOG1644 U2-associated snRNP A' 97.4 0.00016 3.4E-09 74.0 4.7 125 158-339 23-148 (233)
89 COG1821 Predicted ATP-utilizin 97.4 0.0011 2.4E-08 69.7 10.7 106 549-689 66-171 (307)
90 PRK06524 biotin carboxylase-li 97.4 0.0021 4.6E-08 74.8 14.3 138 648-830 181-325 (493)
91 PRK02186 argininosuccinate lya 97.4 0.0025 5.4E-08 80.6 16.2 88 601-705 104-199 (887)
92 PRK07206 hypothetical protein; 97.4 0.0029 6.3E-08 73.0 15.3 88 601-703 105-207 (416)
93 KOG2120 SCF ubiquitin ligase, 97.3 5.2E-05 1.1E-09 81.3 0.3 159 181-361 185-343 (419)
94 PRK13789 phosphoribosylamine-- 97.3 0.0072 1.6E-07 70.2 17.6 42 648-689 143-195 (426)
95 KOG4579 Leucine-rich repeat (L 97.3 2.7E-05 6E-10 75.0 -2.0 127 136-321 15-141 (177)
96 KOG0531 Protein phosphatase 1, 97.3 7.8E-05 1.7E-09 86.0 1.2 109 153-319 94-202 (414)
97 KOG0532 Leucine-rich repeat (L 97.3 7.1E-05 1.5E-09 86.2 0.6 197 79-339 72-268 (722)
98 TIGR00877 purD phosphoribosyla 97.3 0.0085 1.8E-07 69.3 17.7 78 601-689 101-191 (423)
99 PRK05586 biotin carboxylase; V 97.2 0.0045 9.7E-08 72.3 15.1 79 601-690 112-205 (447)
100 PRK05294 carB carbamoyl phosph 97.2 0.0049 1.1E-07 79.5 16.3 86 602-703 667-761 (1066)
101 TIGR02068 cya_phycin_syn cyano 97.2 0.0068 1.5E-07 76.4 16.8 87 601-706 210-304 (864)
102 TIGR00514 accC acetyl-CoA carb 97.2 0.0079 1.7E-07 70.3 16.1 82 601-690 112-205 (449)
103 KOG0532 Leucine-rich repeat (L 97.1 2.1E-05 4.5E-10 90.4 -5.4 61 155-222 76-136 (722)
104 PRK14573 bifunctional D-alanyl 97.1 0.0052 1.1E-07 77.1 14.3 168 648-857 610-783 (809)
105 TIGR01369 CPSaseII_lrg carbamo 97.1 0.0088 1.9E-07 77.0 16.4 87 602-704 667-762 (1050)
106 PRK08591 acetyl-CoA carboxylas 97.0 0.015 3.2E-07 68.0 16.5 80 601-690 112-205 (451)
107 PRK13278 purP 5-formaminoimida 97.0 0.011 2.3E-07 67.0 14.4 147 649-828 150-312 (358)
108 KOG4341 F-box protein containi 97.0 0.00038 8.2E-09 77.9 2.7 218 137-369 129-359 (483)
109 PRK08463 acetyl-CoA carboxylas 97.0 0.012 2.7E-07 69.3 15.5 84 600-690 110-205 (478)
110 PRK06111 acetyl-CoA carboxylas 97.0 0.018 3.9E-07 67.2 16.4 81 601-690 112-205 (450)
111 PRK08462 biotin carboxylase; V 96.9 0.015 3.3E-07 67.9 15.5 80 601-690 114-207 (445)
112 PRK13277 5-formaminoimidazole- 96.9 0.021 4.5E-07 64.2 15.4 152 649-836 153-325 (366)
113 KOG4658 Apoptotic ATPase [Sign 96.9 0.00061 1.3E-08 85.2 3.7 112 175-341 539-652 (889)
114 TIGR01235 pyruv_carbox pyruvat 96.9 0.014 3E-07 75.2 15.6 222 539-831 55-296 (1143)
115 KOG2982 Uncharacterized conser 96.9 0.00064 1.4E-08 73.1 3.1 109 182-339 46-154 (418)
116 PRK12833 acetyl-CoA carboxylas 96.9 0.013 2.9E-07 68.8 14.2 80 601-690 115-208 (467)
117 PRK14016 cyanophycin synthetas 96.8 0.016 3.4E-07 71.8 15.2 134 549-706 164-305 (727)
118 TIGR01435 glu_cys_lig_rel glut 96.8 0.0042 9E-08 75.9 9.9 89 603-707 474-570 (737)
119 KOG2123 Uncharacterized conser 96.8 0.00037 8.1E-09 74.3 0.7 86 153-244 40-125 (388)
120 KOG2739 Leucine-rich acidic nu 96.8 0.00034 7.4E-09 74.2 0.4 113 176-339 38-151 (260)
121 KOG3665 ZYG-1-like serine/thre 96.8 0.0014 3.1E-08 80.0 5.7 184 154-372 122-310 (699)
122 PLN02948 phosphoribosylaminoim 96.8 0.019 4.2E-07 69.1 15.0 128 648-830 156-292 (577)
123 PRK07178 pyruvate carboxylase 96.7 0.015 3.3E-07 68.4 13.5 83 601-690 111-204 (472)
124 PRK08654 pyruvate carboxylase 96.7 0.021 4.5E-07 67.8 14.5 80 601-690 112-205 (499)
125 PRK12999 pyruvate carboxylase; 96.7 0.016 3.5E-07 74.7 14.4 84 601-691 116-210 (1146)
126 COG5238 RNA1 Ran GTPase-activa 96.5 0.0019 4.1E-08 68.9 3.7 107 103-230 28-143 (388)
127 PRK06395 phosphoribosylamine-- 96.5 0.08 1.7E-06 61.7 17.1 81 601-689 102-191 (435)
128 PF15632 ATPgrasp_Ter: ATP-gra 96.5 0.06 1.3E-06 60.2 15.2 84 601-690 104-208 (329)
129 KOG1947 Leucine rich repeat pr 96.5 0.0018 3.8E-08 75.1 3.1 94 156-249 163-256 (482)
130 COG5238 RNA1 Ran GTPase-activa 96.4 0.0091 2E-07 63.8 7.7 145 153-339 29-193 (388)
131 KOG3665 ZYG-1-like serine/thre 96.3 0.0032 7E-08 77.0 4.2 158 181-364 122-283 (699)
132 PRK02471 bifunctional glutamat 96.3 0.025 5.5E-07 70.0 11.9 88 603-706 487-582 (752)
133 PF01071 GARS_A: Phosphoribosy 96.2 0.083 1.8E-06 54.7 13.5 47 776-828 142-189 (194)
134 KOG4341 F-box protein containi 96.1 0.0098 2.1E-07 66.9 6.2 190 152-364 266-460 (483)
135 PRK12815 carB carbamoyl phosph 96.1 0.13 2.7E-06 66.7 17.1 85 602-703 668-759 (1068)
136 KOG4658 Apoptotic ATPase [Sign 96.0 0.0035 7.6E-08 78.6 2.9 130 156-339 547-676 (889)
137 PLN02735 carbamoyl-phosphate s 96.0 0.069 1.5E-06 69.0 14.2 43 648-690 737-786 (1102)
138 KOG2155 Tubulin-tyrosine ligas 95.8 0.009 2E-07 66.9 4.3 51 61-111 81-147 (631)
139 PRK05294 carB carbamoyl phosph 95.7 0.18 3.8E-06 65.4 16.2 77 602-689 126-211 (1066)
140 PRK15386 type III secretion pr 95.7 0.016 3.5E-07 66.2 6.0 50 156-217 54-104 (426)
141 TIGR02712 urea_carbox urea car 95.7 0.27 5.9E-06 64.1 17.7 82 601-690 111-203 (1201)
142 KOG1947 Leucine rich repeat pr 95.6 0.011 2.3E-07 68.6 4.3 63 155-220 244-308 (482)
143 PRK05784 phosphoribosylamine-- 95.4 0.6 1.3E-05 55.3 18.1 49 777-829 263-311 (486)
144 KOG3763 mRNA export factor TAP 95.2 0.017 3.7E-07 67.1 4.2 77 134-217 162-254 (585)
145 PRK15386 type III secretion pr 95.1 0.017 3.8E-07 66.0 3.9 35 178-219 49-84 (426)
146 TIGR01369 CPSaseII_lrg carbamo 95.1 0.44 9.6E-06 61.7 16.7 79 602-689 125-210 (1050)
147 PRK12815 carB carbamoyl phosph 94.9 0.28 6E-06 63.6 14.4 77 602-689 126-211 (1068)
148 COG0439 AccC Biotin carboxylas 94.6 0.42 9.2E-06 55.7 13.4 83 602-691 113-206 (449)
149 PLN02735 carbamoyl-phosphate s 94.6 0.27 5.8E-06 63.7 12.9 41 649-689 181-228 (1102)
150 smart00317 SET SET (Su(var)3-9 94.3 0.051 1.1E-06 50.1 4.3 45 428-479 72-116 (116)
151 PF05770 Ins134_P3_kin: Inosit 93.0 1 2.2E-05 50.0 12.2 195 598-832 87-293 (307)
152 PF14403 CP_ATPgrasp_2: Circul 92.9 0.12 2.5E-06 60.0 4.8 64 620-691 308-386 (445)
153 KOG4308 LRR-containing protein 92.7 0.0078 1.7E-07 70.7 -5.1 172 156-339 89-270 (478)
154 PF13306 LRR_5: Leucine rich r 92.5 0.17 3.7E-06 47.7 4.7 38 177-217 8-45 (129)
155 KOG3763 mRNA export factor TAP 92.4 0.092 2E-06 61.3 3.1 85 153-242 217-307 (585)
156 PF02222 ATP-grasp: ATP-grasp 92.3 2.7 5.8E-05 42.9 13.2 124 648-830 28-163 (172)
157 COG2232 Predicted ATP-dependen 90.7 1.1 2.4E-05 49.5 8.8 44 649-703 150-193 (389)
158 PF02786 CPSase_L_D2: Carbamoy 90.6 3.6 7.8E-05 43.3 12.5 43 649-691 39-92 (211)
159 KOG4308 LRR-containing protein 90.0 0.027 5.8E-07 66.3 -4.4 172 153-339 114-298 (478)
160 KOG0369 Pyruvate carboxylase [ 89.7 2.5 5.4E-05 50.4 11.1 65 620-692 161-239 (1176)
161 PF13306 LRR_5: Leucine rich r 89.2 0.69 1.5E-05 43.5 5.5 117 155-334 13-129 (129)
162 COG0151 PurD Phosphoribosylami 88.8 6.1 0.00013 45.4 13.2 29 648-676 138-166 (428)
163 PF13504 LRR_7: Leucine rich r 87.6 0.33 7.3E-06 30.1 1.3 14 304-317 2-15 (17)
164 COG2308 Uncharacterized conser 86.4 2.3 5.1E-05 48.7 8.1 127 591-729 310-457 (488)
165 KOG0473 Leucine-rich repeat pr 86.2 0.047 1E-06 57.4 -4.9 87 177-316 38-124 (326)
166 PF00560 LRR_1: Leucine Rich R 85.6 0.45 9.8E-06 31.3 1.2 20 278-298 1-20 (22)
167 COG4770 Acetyl/propionyl-CoA c 84.8 3.6 7.9E-05 48.5 8.8 69 619-692 128-207 (645)
168 PF13504 LRR_7: Leucine rich r 83.1 0.6 1.3E-05 28.9 0.9 13 182-194 2-14 (17)
169 PF00856 SET: SET domain; Int 81.7 1.8 3.9E-05 41.6 4.3 51 422-479 111-161 (162)
170 KOG3864 Uncharacterized conser 81.4 0.48 1E-05 49.1 0.1 34 326-359 171-207 (221)
171 smart00370 LRR Leucine-rich re 80.9 0.95 2.1E-05 30.8 1.4 18 278-295 3-20 (26)
172 smart00369 LRR_TYP Leucine-ric 80.9 0.95 2.1E-05 30.8 1.4 18 278-295 3-20 (26)
173 PRK10507 bifunctional glutathi 80.7 2.4 5.2E-05 51.4 5.6 82 601-697 494-579 (619)
174 PHA02117 glutathionylspermidin 79.9 2.5 5.4E-05 48.7 5.2 95 602-705 269-366 (397)
175 KOG0238 3-Methylcrotonyl-CoA c 78.7 7.7 0.00017 45.3 8.4 46 647-692 147-203 (670)
176 smart00369 LRR_TYP Leucine-ric 77.9 1.7 3.7E-05 29.5 1.9 20 302-321 1-20 (26)
177 smart00370 LRR Leucine-rich re 77.9 1.7 3.7E-05 29.5 1.9 20 302-321 1-20 (26)
178 KOG1083 Putative transcription 75.3 2.1 4.5E-05 53.4 2.9 41 433-480 1254-1294(1306)
179 PF13516 LRR_6: Leucine Rich r 74.1 2.7 5.9E-05 28.0 2.1 16 180-195 1-16 (24)
180 COG0754 Gsp Glutathionylspermi 73.4 3.2 6.8E-05 46.5 3.5 87 601-706 262-352 (387)
181 COG1038 PycA Pyruvate carboxyl 72.6 56 0.0012 40.6 13.6 69 619-692 134-213 (1149)
182 smart00365 LRR_SD22 Leucine-ri 70.0 3.3 7.1E-05 28.8 1.7 18 206-223 1-18 (26)
183 KOG1082 Histone H3 (Lys9) meth 67.0 4.9 0.00011 45.8 3.5 54 426-482 269-322 (364)
184 KOG0473 Leucine-rich repeat pr 61.5 0.24 5.2E-06 52.3 -7.6 56 276-339 64-119 (326)
185 KOG3864 Uncharacterized conser 60.2 4.5 9.8E-05 42.2 1.4 90 278-371 102-191 (221)
186 COG0027 PurT Formate-dependent 59.0 75 0.0016 35.5 10.3 68 626-707 132-208 (394)
187 smart00368 LRR_RI Leucine rich 57.6 10 0.00023 26.5 2.4 15 303-317 2-16 (28)
188 smart00365 LRR_SD22 Leucine-ri 56.3 7.1 0.00015 27.1 1.4 15 278-292 3-17 (26)
189 smart00364 LRR_BAC Leucine-ric 55.1 7.2 0.00016 27.2 1.2 17 303-319 2-18 (26)
190 COG2940 Proteins containing SE 54.0 8 0.00017 45.8 2.3 50 427-483 403-452 (480)
191 KOG2589 Histone tail methylase 50.1 12 0.00026 42.0 2.6 50 419-481 189-238 (453)
192 PF04174 CP_ATPgrasp_1: A circ 46.3 11 0.00024 42.4 1.8 85 592-685 233-330 (330)
193 PF04174 CP_ATPgrasp_1: A circ 45.9 18 0.0004 40.7 3.4 27 803-829 67-94 (330)
194 PF00919 UPF0004: Uncharacteri 36.0 30 0.00065 31.9 2.6 31 545-575 14-44 (98)
195 TIGR00864 PCC polycystin catio 34.4 22 0.00049 49.6 2.1 33 283-317 1-33 (2740)
196 COG0458 CarB Carbamoylphosphat 34.0 3.5E+02 0.0076 31.4 11.1 30 649-678 151-180 (400)
197 KOG1085 Predicted methyltransf 32.9 48 0.001 36.2 3.8 58 429-497 333-390 (392)
198 KOG1080 Histone H3 (Lys4) meth 32.3 44 0.00094 43.0 4.0 52 428-486 938-989 (1005)
199 COG3919 Predicted ATP-grasp en 31.9 72 0.0016 35.2 5.0 77 601-689 111-200 (415)
200 TIGR02049 gshA_ferroox glutama 27.9 1E+02 0.0022 35.2 5.4 90 646-749 255-362 (403)
201 KOG2158 Tubulin-tyrosine ligas 25.2 13 0.00029 42.9 -1.9 43 800-843 11-53 (565)
202 PF09241 Herp-Cyclin: Herpesvi 24.6 50 0.0011 29.2 1.9 20 21-40 11-30 (106)
203 PF14243 DUF4343: Domain of un 24.6 75 0.0016 30.8 3.3 25 805-829 93-117 (130)
204 TIGR00864 PCC polycystin catio 23.6 42 0.00091 47.2 1.8 34 187-222 1-34 (2740)
205 PHA02117 glutathionylspermidin 23.3 70 0.0015 37.1 3.3 32 805-836 106-139 (397)
206 smart00367 LRR_CC Leucine-rich 21.9 1.2E+02 0.0025 20.6 2.9 15 180-194 1-16 (26)
No 1
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-146 Score=1167.25 Aligned_cols=617 Identities=42% Similarity=0.733 Sum_probs=547.2
Q ss_pred ccchhhHHHHHHHhHHHHHcCCCCHHHHHHHHHHhhhccccCCCceEEEEecCCceeEEEEecC--C--CCCCCcEEEEE
Q 002880 5 SNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQ--S--MPKESNVFLVD 80 (871)
Q Consensus 5 ~~~~~~~~~f~~~h~~~l~~~~~p~~~~~~l~~kl~~~~fd~g~~f~i~~~~~~~~~~~~~~~~--~--~~~~~~iflid 80 (871)
+.++++|.+|+++||+||+||||||+||++||+||++|+||||++|||+.+++++.-+--+++| . ..|+++||++|
T Consensus 1 ~~~a~~f~~F~~~Hg~~L~ASgvPp~lw~rL~~KL~~~tFDaGd~FqI~~~e~~~dEe~e~arel~~~q~nd~~~~~~l~ 80 (631)
T KOG2155|consen 1 DRSAYPFSTFLDQHGGQLNASGVPPELWHRLYKKLSDQTFDAGDHFQIICEENEDDEETEFARELEDLQNNDEDNIFLLD 80 (631)
T ss_pred CCccccHHHHHHhcccccccCCCCHHHHHHHHHHhhhcccCCcCeeeEEEecccchhHHHHHHHHHhccCCCccceeeee
Confidence 4578999999999999999999999999999999999999999999999888764332234444 3 35788999999
Q ss_pred eeeeccchHHHHHHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEe
Q 002880 81 HAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLE 160 (871)
Q Consensus 81 hawt~~~~~~~~ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 160 (871)
|+-+|.-++||++..-..||.+|++.++|||.++-.++++.-+
T Consensus 81 ~~~s~~~ESa~~c~~pn~gl~~~~~~iFgiD~~~t~~vd~t~~------------------------------------- 123 (631)
T KOG2155|consen 81 HFMSFSSESARKCVEPNEGLVERLAGIFGIDTDSTEEVDETVE------------------------------------- 123 (631)
T ss_pred eeeeeehhhhhcccCCCccHHHhhccccccCCccceeccHHHH-------------------------------------
Confidence 9999999999999999999999999999998766533111000
Q ss_pred eccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccc
Q 002880 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI 240 (871)
Q Consensus 161 L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~ 240 (871)
+
T Consensus 124 ------------~------------------------------------------------------------------- 124 (631)
T KOG2155|consen 124 ------------K------------------------------------------------------------------- 124 (631)
T ss_pred ------------H-------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcch
Q 002880 241 YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSV 320 (871)
Q Consensus 241 lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~ 320 (871)
T Consensus 125 -------------------------------------------------------------------------------- 124 (631)
T KOG2155|consen 125 -------------------------------------------------------------------------------- 124 (631)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCCcccccCcccchhhcccccccccccCCCCCCCCCCchhHHHHHH
Q 002880 321 RELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLS 400 (871)
Q Consensus 321 ~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~Ln~~~vs~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~Vl~ 400 (871)
|..++| .++++++.++..|+|.+ .+++.++++|++ .|+=.|+.++.++|++
T Consensus 125 ---------------le~~v~-------~e~~e~l~~~s~l~G~~------~~~~~vd~~l~~-~~~~~P~~elv~~VL~ 175 (631)
T KOG2155|consen 125 ---------------LETSVE-------KEEAEHLKKISSLTGNL------PRHESVDARLSS-YSVDDPKNELVEKVLK 175 (631)
T ss_pred ---------------hhccch-------hhHHHHHHHHHHhhCCC------CcccchhhccCc-ccccCcchHHHHHHHH
Confidence 000000 12444555555666655 356778888888 8888999999999999
Q ss_pred HHHHHhheeecCcccccCCceeeeeccccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCccccccc
Q 002880 401 AMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL 480 (871)
Q Consensus 401 ~mW~y~~~Y~~~~~~~~~~~~~wy~~de~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~ 480 (871)
+||+|+++|+++.+++++++++|||||||||||||||+||||+|||||||++ +|||||||++++..||||||||+
T Consensus 176 amWky~qtY~la~~~~~ek~svWYvMDefGsrvrHsdePnf~~aPf~fmPq~-----vaYsimwp~k~~~tgeE~trDfa 250 (631)
T KOG2155|consen 176 AMWKYSQTYSLAYQGEIEKKSVWYVMDEFGSRVRHSDEPNFRIAPFMFMPQN-----VAYSIMWPTKPVNTGEEITRDFA 250 (631)
T ss_pred HHHHhhheeecccCccccccceeEEHhhhhhhhccCCCCcceeeeheecchh-----cceeEEeeccCCCCchHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCChhhchhhccccccCChhhHHHHHHHHhhhcccccccCCCCCCCCCccccCCCCCceEEEcChHHHHHHHHcCCcE
Q 002880 481 YGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFV 560 (871)
Q Consensus 481 ~~~~~~~~r~~~l~~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~kv~~d~~~V~~~L~~~gf~ 560 (871)
.|++++++|+|+|+||++|++.+|..++.++-+.....+ +++.+..+.....|+++|||||.++|.++|+++.|+
T Consensus 251 sg~~~p~~Rk~~l~pWa~tde~~~~~~~~e~~qa~~~e~-----k~s~p~~s~pi~hg~~~kVYtD~~Qv~e~Lt~p~f~ 325 (631)
T KOG2155|consen 251 SGVIHPEWRKYILQPWAATDETMIPDATLEYFQATEQET-----KQSAPFTSLPILHGRKIKVYTDDTQVTEHLTNPKFE 325 (631)
T ss_pred hcCCCHHHHHHHhccccCCCcccCCchHHHHHHHHHHhc-----cccCCccccccccCceeEEEcCcHHHHHhccCCceE
Confidence 999999999999999999988777766554444322111 111111122223489999999999999999999999
Q ss_pred EeCCCCCceEEEeccCCcchHHhhhCCCCCcEEccccCCCcccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhh
Q 002880 561 ITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYY 640 (871)
Q Consensus 561 ~~~~~~~~di~W~~~~~~~~~~~~~~l~~~q~vN~fP~~~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~ 640 (871)
+|+++++|||+|+..|++ ||+++++.+|.+++||||++++||.||+||.++++.+|.++|+|.||+|.+++++|+++|+
T Consensus 326 ~t~~~kdADilw~~~hf~-Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r~~g~~~Wlq~TyNL~TqLpqFv~~fq 404 (631)
T KOG2155|consen 326 YTDDIKDADILWMIKHFH-DYKKLSEENPCGMINQFPFESCLTVKDLLAACAMRDPGKNDWLQLTYNLNTQLPQFVARFQ 404 (631)
T ss_pred eccCccccceeeehhhHH-HHHHHhccCCcceeccCchHHHHHHHHHHHHHHhhcCCCCcccccccccccchHHHHHHHH
Confidence 999999999999999997 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcc
Q 002880 641 VRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDV 720 (871)
Q Consensus 641 ~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~ 720 (871)
+|++.|.+|+||+||||++||.+++|++++.+|+|.++++|+||||||++|+|+.|-||||||+|+++|+.||++|+|+.
T Consensus 405 ~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr~gKFDlRYiVllrsi~Pl~~yvy~~ 484 (631)
T KOG2155|consen 405 NRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFRNGKFDLRYIVLLRSIAPLTAYVYNR 484 (631)
T ss_pred HHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceeecCccceEEEEEEccccchhhhheeh
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eEEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhhCCCC-
Q 002880 721 FWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQ-VKWLEIHQRVKNTIRSVFEAAAVAHPEM- 798 (871)
Q Consensus 721 g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~-~~w~~I~~~I~~~i~~~~~a~~~~~~~~- 798 (871)
+|+|||+++|++.+ +++|++|||+|||..+++||++++|+..++++|+ ..|.++...|..++++.|.+|+...+++
T Consensus 485 FWiRfsnn~fsL~~--f~dyEtHFTVmNY~~kl~q~~ceeFi~~~ek~yp~~pw~dvq~~i~~aire~~eaaak~~~e~g 562 (631)
T KOG2155|consen 485 FWIRFSNNEFSLSN--FEDYETHFTVMNYLEKLLQMKCEEFIGEFEKGYPCFPWEDVQCSIVPAIREPFEAAAKLNPECG 562 (631)
T ss_pred eeeeecCCccchhh--hhhhhhhhhhhhHHHHHhhccHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHhhhhccCCccc
Confidence 99999999999975 9999999999999999999999999999999998 7899999999999999999998876653
Q ss_pred --CCCCcEEEEeeeEEE--cCC--CceEEEEecCCCCCCccccccccccccccccccccchhhhhhhcccCCC--CCCcC
Q 002880 799 --HSSKSRAMYGVDIML--DSS--FQPKLLEVTYCPDCTRACKYDTEALVTGEVVKGADFFNYVFGCLFLNKT--AHVTP 870 (871)
Q Consensus 799 --~~~~~fel~G~D~ml--D~~--~kpwLLEVN~~P~l~~~~~~~~~~~~~~~~~~~p~f~n~~f~~lfl~~~--~~~~~ 870 (871)
..++++++||+|+|+ |.+ ++|.|||||++|+|.|+|+|| |+|||+||+||||||+ .+|||
T Consensus 563 ~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPDc~RACrYh------------pdFfnnVFstLFLDep~~chVtp 630 (631)
T KOG2155|consen 563 AALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACRYH------------PDFFNNVFSTLFLDEPSDCHVTP 630 (631)
T ss_pred ccCCchhhhhhhheeeeccCCCccccceeEEEecCcchHHHhhcC------------hhHHHhHHHHhhccCCCCccccc
Confidence 478999999999999 665 999999999999999999998 9999999999999999 77998
Q ss_pred C
Q 002880 871 L 871 (871)
Q Consensus 871 ~ 871 (871)
|
T Consensus 631 L 631 (631)
T KOG2155|consen 631 L 631 (631)
T ss_pred C
Confidence 7
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=3.8e-53 Score=462.62 Aligned_cols=261 Identities=28% Similarity=0.426 Sum_probs=134.7
Q ss_pred CCCcEEccccCCCcccccHHHHHHHHHhcCC----CCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCc
Q 002880 588 TDQQYVNQFPFESCLVMKHHLAETVQKAHGS----PEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTID 663 (871)
Q Consensus 588 ~~~q~vN~fP~~~~lt~K~~L~~~l~~~~g~----~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~G 663 (871)
.++|+||||||++.||+|+.|+++++++.+. .+|+|+||.||.++.+|..++. +...+.||+||++++||+|
T Consensus 5 ~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~~----~~~~~~wI~KP~~~~rG~G 80 (292)
T PF03133_consen 5 KPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYFE----KNPKNLWIVKPSNGSRGRG 80 (292)
T ss_dssp CHHTT-TSS--EEEE-----------------------------HHHHHHHHHHHHH----TTS---EEEEES-------
T ss_pred CCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHHh----cCCCCEEEEeccccCCCCC
Confidence 4689999999999999999999999887542 3699999999999999987763 3344899999999999999
Q ss_pred EEEecChHHHHH--HhccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccc
Q 002880 664 TSVTDDLSAVIR--LMETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYE 741 (871)
Q Consensus 664 I~v~~~l~~i~~--~~~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~ 741 (871)
|+++++++++.+ ....+++||||||++|+|++|||||||+||||+|++||+||+|++|++|+|+.+|+....++.+.+
T Consensus 81 I~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~ 160 (292)
T PF03133_consen 81 IKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRF 160 (292)
T ss_dssp EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS-------------
T ss_pred ceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeecccccccccc
Confidence 999999999985 345689999999999999999999999999999999999999999999999999994323478899
Q ss_pred cceeeeccccCCCC-------C-CChhhHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHH---hhCCCCCCCCcEEEEe
Q 002880 742 THFTVMNYGRRFNH-------M-NTPDFVRGFEAEH--QVKWLEIHQRVKNTIRSVFEAAA---VAHPEMHSSKSRAMYG 808 (871)
Q Consensus 742 ~HlTn~ny~~~~~~-------~-~~~df~~~~~~~~--~~~w~~I~~~I~~~i~~~~~a~~---~~~~~~~~~~~fel~G 808 (871)
+|+||+++++.... . .....+..+.... +..|+.++++|..+++.++.++. .........+|||+||
T Consensus 161 ~HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~Fel~G 240 (292)
T PF03133_consen 161 AHLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYLKEGIDWEKIWEKICDIIIKTILAAEFRSSQPNMPPRPNCFELFG 240 (292)
T ss_dssp -----------------------EEEHHHHHHHCTTTSSS-STTTCHHHHHHHHHHHHHH-HHHHH--TTSSSEE-EEEE
T ss_pred ccccccccccccccccccccccccccchhhhhhhhcccCCCcccchhhhhHHHHHHhhhhhhhhccccccccccccceee
Confidence 99999888753110 0 0111223333211 35667777777777777766661 1122245678999999
Q ss_pred eeEEEcCCCceEEEEecCCCCCCccccccccccccccccccccchhhhhhhc
Q 002880 809 VDIMLDSSFQPKLLEVTYCPDCTRACKYDTEALVTGEVVKGADFFNYVFGCL 860 (871)
Q Consensus 809 ~D~mlD~~~kpwLLEVN~~P~l~~~~~~~~~~~~~~~~~~~p~f~n~~f~~l 860 (871)
+|||||++++|||||||++|++.++|+++.+++ +.++.|+|+..
T Consensus 241 ~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~--------~~li~d~l~i~ 284 (292)
T PF03133_consen 241 FDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELK--------PQLIDDLLKIV 284 (292)
T ss_dssp EEEEEBTTS-EEEEEEESS------TTTHHHHH--------HHHHHHTTTTT
T ss_pred eEEEecCCCeEEEeeCCCCCCcccCCHhHHHHH--------HHHHHHHhEEE
Confidence 999999999999999999999999999997777 66777877743
No 3
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-49 Score=428.98 Aligned_cols=283 Identities=26% Similarity=0.360 Sum_probs=234.6
Q ss_pred HHHHHHHcCCcEEeCCCCCceEEEeccCCcchHHhhhCCCCCcEEccccCCCcccccHHHHHHHHHhc---C--CCCccc
Q 002880 549 YVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKAH---G--SPEWLQ 623 (871)
Q Consensus 549 ~V~~~L~~~gf~~~~~~~~~di~W~~~~~~~~~~~~~~l~~~q~vN~fP~~~~lt~K~~L~~~l~~~~---g--~~~~lP 623 (871)
.|++.|...||++++...+|..+|+..-....|+ .+++||+||||||.--|+|||.|.+.+++.. | ...|+|
T Consensus 208 vv~~vl~~sgfkivk~n~dw~g~Wg~h~ksp~fr---~ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmP 284 (662)
T KOG2156|consen 208 VVRQVLANSGFKIVKVNDDWMGVWGHHLKSPSFR---AIRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMP 284 (662)
T ss_pred HHHHHHHhcccEEecccchHHHHhhhhcCCchhh---hhhhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccc
Confidence 5899999999999999999999999765444554 5669999999999999999999999887653 2 467999
Q ss_pred ceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhccCCcccccccccccccCCceeeeeE
Q 002880 624 PTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIEFPALFQGRKFDLRY 703 (871)
Q Consensus 624 ~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~~~~~IvQkYI~~PlLi~grKFDlR~ 703 (871)
.||+||+|+++|.+++. ++....|||||.+.+||.||.++++..++. .+.|.|||+||++|+||+|.|||+|+
T Consensus 285 rtyilP~d~e~lrk~w~----~nasr~wIVkppasaRg~gIrv~~kw~q~p---k~rpLvvQ~yieRP~ling~KFDlrl 357 (662)
T KOG2156|consen 285 RTYILPADREELRKYWE----KNASRLWIVKPPASARGIGIRVINKWSQFP---KDRPLVVQKYIERPLLINGSKFDLRL 357 (662)
T ss_pred eeeeccccHHHHHHHHh----hCccccEEecCcccccCcceEeccchhhCC---CcccHHHHHHhhcceeecCcceeEEE
Confidence 99999999999987763 345566999999999999999999988875 36789999999999999999999999
Q ss_pred EEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCC-CC-CCChhh----------HHHHH--Hhc
Q 002880 704 IVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRF-NH-MNTPDF----------VRGFE--AEH 769 (871)
Q Consensus 704 yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~-~~-~~~~df----------~~~~~--~~~ 769 (871)
||.|||++||+||+|++|++|||+.+|.....++.|+++|+| ||+.+. .+ ...++| ...|. .+.
T Consensus 358 Yv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhlt--nYs~nke~~ys~~k~~n~~~g~kwtl~~lw~~l~~q 435 (662)
T KOG2156|consen 358 YVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLT--NYSPNKESNYSLNKYFNACQGSKWTLKSLWLYLDNQ 435 (662)
T ss_pred EEEEeecCceEEEEeccceeeeccccCCcccccccceeEEec--cccccccchhhhhhHHhhcCCchhhHHHHHHHHHhc
Confidence 999999999999999999999999999998888899999999 565421 11 000111 11121 234
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCC------CCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCcccccccccccc
Q 002880 770 QVKWLEIHQRVKNTIRSVFEAAAVAHP------EMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKYDTEALVT 843 (871)
Q Consensus 770 ~~~w~~I~~~I~~~i~~~~~a~~~~~~------~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~~~~~~~~ 843 (871)
|.+-+.|+++|+.+++++|.+..+... ..+.-.|||++||||+||++++|||+|||.+|+++...+.|..++-+
T Consensus 436 Gvdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~ 515 (662)
T KOG2156|consen 436 GVDTDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAP 515 (662)
T ss_pred CCCHHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecCccceeeEEEecccccccCCCccchhhhH
Confidence 667778999999999999887543211 12344699999999999999999999999999999999999888755
No 4
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-40 Score=374.67 Aligned_cols=306 Identities=22% Similarity=0.347 Sum_probs=238.6
Q ss_pred CCceEEEcChH---HHHHHHHcCCcEEeC-CCCCceEEEeccCCcchHHhhhCCCCC-cEEccccCCCcccccHHHHHHH
Q 002880 538 GCASRVYTDIP---YVEEFLTRTEFVITT-EPKDADIIWTSLQVDEDMKTATGITDQ-QYVNQFPFESCLVMKHHLAETV 612 (871)
Q Consensus 538 ~~~~kv~~d~~---~V~~~L~~~gf~~~~-~~~~~di~W~~~~~~~~~~~~~~l~~~-q~vN~fP~~~~lt~K~~L~~~l 612 (871)
+.+++..+++. .|.+++.+.||-.+. ...+|+++|..++..+.. ...+.|. |++||||+...|++||.++.++
T Consensus 73 k~~i~y~~~~~~~~~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~--~~~~~p~~~~~~~~p~~~~L~rkd~l~~~i 150 (497)
T KOG2157|consen 73 KHKIKYRTQEKEPKLLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFD--FSWLAPYNQVVNHFPRRKELTRKDLLMKLI 150 (497)
T ss_pred CCceEEEecccchHHHHHHHhhcceeeecccccceEEEEeccccccHH--HhhhcchhhhhhccccHHHhhhhHHhhhhH
Confidence 34577666663 688888888997765 678999999998776432 2344566 9999999999999999999999
Q ss_pred HHhc---C-------------CCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 613 QKAH---G-------------SPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 613 ~~~~---g-------------~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
+++. + ..++.|.|+.++.+...|+.+|. +++..+.||+||.+.+||+||.+++.++.+...
T Consensus 151 ~r~~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~---~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~ 227 (497)
T KOG2157|consen 151 KRYLALLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYE---EDSERSWWIVKPASKSRGRGIFLFNTLSDLQAI 227 (497)
T ss_pred HHHHHhccccccchhhcccceeecccchhhhhhhHHHHHHHHHH---hccccceEEeccccccccceeEEecchhhhhhh
Confidence 8753 1 14799999999999999999884 347889999999999999999999999987776
Q ss_pred h----------ccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceee
Q 002880 677 M----------ETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTV 746 (871)
Q Consensus 677 ~----------~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn 746 (871)
. +.+.++||+||++|+||+|+|||||.||+|++.+|+.+|.|++|++|||+.+|.. ..++++..+||||
T Consensus 228 ~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~-~~nl~n~~~HLtN 306 (497)
T KOG2157|consen 228 VDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP-LVNLQNMSVHLTN 306 (497)
T ss_pred hhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcc-hhhhcccchhhhc
Confidence 4 2467999999999999999999999999999999999999999999999999995 4458889999998
Q ss_pred eccccCC---C---------CCC-ChhhHHHHHHh-cc-chHHH-HHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeee
Q 002880 747 MNYGRRF---N---------HMN-TPDFVRGFEAE-HQ-VKWLE-IHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVD 810 (871)
Q Consensus 747 ~ny~~~~---~---------~~~-~~df~~~~~~~-~~-~~w~~-I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D 810 (871)
..+++.. . +++ ...|+.++... .+ ..+.. |.+.+..++..++.++...+ ...+|||+||+|
T Consensus 307 ~siqK~~~~~~~~~s~~~~~~~w~~~~~~~yl~~~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~~---~~~n~FElyG~D 383 (497)
T KOG2157|consen 307 VSIQKLYPNYCHLSSLLSESCKWTLNSLLLYLRNIGSPCLELKLQIKPIITGIVLSVFASATTVP---SLANCFELYGFD 383 (497)
T ss_pred cccccCCCCcccccccccCCCcccHHHHHHHHHhhcCCcccccccchhhhhhhhhhhhhhccccc---cccchhhhhCcc
Confidence 7665511 1 111 23355555542 12 22232 33334444444444433221 357899999999
Q ss_pred EEEcCCCceEEEEecCCCCCCccccccccccccccccccccchhhhhhhc
Q 002880 811 IMLDSSFQPKLLEVTYCPDCTRACKYDTEALVTGEVVKGADFFNYVFGCL 860 (871)
Q Consensus 811 ~mlD~~~kpwLLEVN~~P~l~~~~~~~~~~~~~~~~~~~p~f~n~~f~~l 860 (871)
||+|++++|||||||++|+|+..+..+..++ +..++|+-.+-
T Consensus 384 fliD~~lkpwLiEiNssP~~~~t~~~d~~l~--------~~l~~d~l~~v 425 (497)
T KOG2157|consen 384 FLIDEALKPWLIEINASPDLTQTTKNDARLK--------SKLIDDVLKVV 425 (497)
T ss_pred eeecCCCCeEEEEeecCCcccccchhhhHHH--------HHHHHHhhccc
Confidence 9999999999999999999999999997777 66677776653
No 5
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.5e-32 Score=293.25 Aligned_cols=240 Identities=22% Similarity=0.221 Sum_probs=186.5
Q ss_pred CcEEccccCCCcccccHHHHH-HHHHhcC-CCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEe
Q 002880 590 QQYVNQFPFESCLVMKHHLAE-TVQKAHG-SPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVT 667 (871)
Q Consensus 590 ~q~vN~fP~~~~lt~K~~L~~-~l~~~~g-~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~ 667 (871)
.|.+|||||+.+++ |+.|.- .|++.+. ...|+|.||.||.++-.|.+.+..- ...+||||..|++|.||.++
T Consensus 172 fqrvn~fPgm~e~~-kd~Lsl~~mqkifpeey~fyp~sw~lPa~l~df~a~~~~~-----KrtfivkpDsgaqg~giyli 245 (565)
T KOG2158|consen 172 FQRENNFPGMREKE-KDILDLLEMQKIFPEEYMFYPTSWRLPAPLCDFPASTEIM-----KRTFIVKPDSGAQGSGIYLI 245 (565)
T ss_pred hhhhhcCchHHHHH-HHHHhHHHHHhcChHHhcCCCccccCchHHHHHHHHHHHh-----cccEEECCCCCCCCcceeee
Confidence 58999999999999 999872 1333332 2469999999999999998877532 24999999999999999999
Q ss_pred cChHHHHHHhccCCccccccccccccc-CCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCC-Ccccccccee
Q 002880 668 DDLSAVIRLMETGPKICQKYIEFPALF-QGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKH-SFFEYETHFT 745 (871)
Q Consensus 668 ~~l~~i~~~~~~~~~IvQkYI~~PlLi-~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~-~l~~~~~HlT 745 (871)
+++..+-.+ ...++|+||..|||+ |+.|||+|+|++++|++||++|++++|++|||+++|..+++ ++.+.++|+|
T Consensus 246 sDir~~g~~---Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eGlaRFcTeky~ePts~n~~~lymhlT 322 (565)
T KOG2158|consen 246 SDIREKGEY---QNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLARFCTEKYIEPTSANRSHLYMHLT 322 (565)
T ss_pred chhhhhhHH---HHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccchhhhhhccccCCCcccHHHHHHHHH
Confidence 877666543 348999999999999 89999999999999999999999999999999999998774 6778899999
Q ss_pred eeccccCCCC---CCCh-----hhHHH------HHHhccchHHHHHHHHHHHHHHHHHHHHhh--------CCC-CCCCC
Q 002880 746 VMNYGRRFNH---MNTP-----DFVRG------FEAEHQVKWLEIHQRVKNTIRSVFEAAAVA--------HPE-MHSSK 802 (871)
Q Consensus 746 n~ny~~~~~~---~~~~-----df~~~------~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~--------~~~-~~~~~ 802 (871)
||+.+..+ .+++ .-.+. .....+++-..++..|+.++.....|+.+. -+. ...+.
T Consensus 323 --nYslnk~nsny~hsd~sq~~gSkR~Lsti~~ql~s~gvdtk~vwsDik~v~iktvlA~~peLk~~y~~~fp~h~tgpa 400 (565)
T KOG2158|consen 323 --NYSLNKPNSNYAHSDNSQVSGSKRQLSTINEQLDSLGVDTKFVWSDIKIVFIKTVLAESPELKEDYIDNFPYHKTGPA 400 (565)
T ss_pred --HhhhcCCCccccccCcccccchhHHHHHHHHHHHhcCchHHHHHhhhhhhhcchhhhcCHHHHHHHHHhCCCCCcCCc
Confidence 56542211 1222 11121 222456666667777776666665555432 121 23578
Q ss_pred cEEEEeeeEEEcCCCceEEEEecCCCCCCccccccccc
Q 002880 803 SRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKYDTEA 840 (871)
Q Consensus 803 ~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~~~~~ 840 (871)
||++.|||+|.++++.|.|+|||..|++...-..|.+.
T Consensus 401 cfqi~gfDi~~~~k~~pillevnrapslr~~~~vd~e~ 438 (565)
T KOG2158|consen 401 CFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE 438 (565)
T ss_pred eEEEeccchhhccccchHHHHhcccccccccccCCCch
Confidence 99999999999999999999999999999987777554
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.79 E-value=3.5e-18 Score=184.06 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=146.3
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEec----------
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTD---------- 668 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~---------- 668 (871)
.+-.|..+++.|++...-.+++|+|..+.. ++.+|+..| +..++||.+|++|+||..+.
T Consensus 15 ~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y---------~~vylKP~~Gs~G~gI~ri~~~~~~~~~~~ 85 (262)
T PF14398_consen 15 GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKY---------KSVYLKPDNGSKGKGIIRIEKKGGGYRIQY 85 (262)
T ss_pred CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHC---------CEEEEEeCCCCCCccEEEEEEeCCEEEEEE
Confidence 357999999999876444579999988864 788999888 88999999999999998443
Q ss_pred ------------ChHHHHHH----hccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCC
Q 002880 669 ------------DLSAVIRL----METGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSL 732 (871)
Q Consensus 669 ------------~l~~i~~~----~~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~ 732 (871)
+.+++... ...++||||++|+. +.++||+||+|+.|.-.. -.-|......+|+|....-.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l-~~~~gr~fD~RvlvqK~~---~G~W~vtg~~~Rva~~~~iv 161 (262)
T PF14398_consen 86 RNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPL-ATYDGRPFDFRVLVQKNG---SGKWQVTGIVARVAKPGSIV 161 (262)
T ss_pred ccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccc-cccCCCeEEEEEEEEECC---CCCEEEEEEEEEEcCCCCce
Confidence 22333332 23568999999994 778999999999999764 45688899999999866332
Q ss_pred CCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEE
Q 002880 733 DKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIM 812 (871)
Q Consensus 733 ~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~m 812 (871)
| |++.+..-...++++... .....+..+|.++...+..+..... +..+..+|+||.
T Consensus 162 ------------T--N~~~GG~~~~~~~~l~~~-----~~~~~~~~~l~~~a~~ia~~le~~~-----~~~~gElGiDl~ 217 (262)
T PF14398_consen 162 ------------T--NLSQGGTALPFEEVLRQS-----EEAEKIREELEDLALEIAQALEKHF-----GGHLGELGIDLG 217 (262)
T ss_pred ------------e--ccCCCceecCHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHhc-----CCceeEEEEEEE
Confidence 2 333333333444555444 1245666777777666555544322 222888999999
Q ss_pred EcCCCceEEEEecCCCCCCccccc
Q 002880 813 LDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 813 lD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
||.+|++||||||+.|+.......
T Consensus 218 iD~~g~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 218 IDKNGKIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred EcCCCCEEEEEEeCCCCcchhhcc
Confidence 999999999999999998876665
No 7
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.8e-13 Score=150.68 Aligned_cols=229 Identities=17% Similarity=0.168 Sum_probs=139.7
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
++++...|+++.+...... ..+..||+++.|+||+|-|.+|.++......||+|+.|+||.|++.-..+... ..
T Consensus 121 kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----~~ 194 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----TL 194 (505)
T ss_pred HhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----hh
Confidence 5688899999988875544 57889999999999999999999999999999999999999999975432111 12
Q ss_pred cCCCcccccccccccc---ccccccccccccCCCCCCC------------------------ccc------cCCcCCccc
Q 002880 234 GCPKLEIYNSNFTINF---GEWALGFCGEVYDKDNPSS------------------------LCL------RDRPLQSVT 280 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~---~~~~l~~~~~~~~~~~~~~------------------------i~~------~~~~l~~L~ 280 (871)
.++.|+.++++.||.. -.|-+..|.++..+.+..+ -.. -...++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 4556666666666543 0111222333333333222 100 012334444
Q ss_pred eeecCCccccccc-ccc--C-CCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee---CCCCCCchhhHHhh
Q 002880 281 SLDLSNRCIHNLV-NKA--F-SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD---IPGPLGESAIEILE 353 (871)
Q Consensus 281 ~LdLS~N~I~~l~-p~~--~-~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~---iP~~l~~~~~~Il~ 353 (871)
.|++|.|+|.++- |++ . ....+++|++|+++.|++.+|+. .+.+..+++|+.|++. +..+.+.....|+|
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s---l~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIA 351 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS---LNHLRTLENLKHLRITLNYLNKETDTAKLLVIA 351 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc---cchhhccchhhhhhcccccccccccceeEEeee
Confidence 4444444444431 111 0 01145566666666666554331 1223444555555544 22333323377999
Q ss_pred hCCCcccccCcccchhhcccccccccccCCCCCCCCCCchhHHHHHHHHHHHhh
Q 002880 354 SLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLM 407 (871)
Q Consensus 354 ~L~~L~~Ln~~~vs~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~Vl~~mW~y~~ 407 (871)
+++.|..||+++++ +.+++.++.-++ ..++..+|++..
T Consensus 352 r~~~l~~LN~~di~--p~eRR~AEl~~~--------------~~~~~ne~s~~~ 389 (505)
T KOG3207|consen 352 RISQLVKLNDVDIS--PNERRDAELYYL--------------SKIFDNEISDAE 389 (505)
T ss_pred ehhhhhhhcccccC--hHHhhhhhhhHH--------------hhhhhhhhhhhh
Confidence 99999999999999 445555544444 567888888865
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.23 E-value=2.3e-12 Score=146.05 Aligned_cols=229 Identities=23% Similarity=0.291 Sum_probs=126.8
Q ss_pred HHHHHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCC-------CCceeEEeec
Q 002880 90 AFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKG-------DGTVKWLELE 162 (871)
Q Consensus 90 ~~~ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~L~L~ 162 (871)
-|.+|+++|+-+.|++.|..+.+.-| ++..+- +| ..++..+.-++-+. ......| .+.+..||||
T Consensus 40 nrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vh---GE---Ls~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 40 NRTKLEQVPEELSRLQKLEHLSMAHN-QLISVH---GE---LSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred chhhhhhChHHHHHHhhhhhhhhhhh-hhHhhh---hh---hccchhhHHHhhhc-cccccCCCCchhcccccceeeecc
Confidence 36789999999999999998876655 333222 22 22222222222111 1112222 2347777777
Q ss_pred ccccccc--------ccccc------------cccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccccc
Q 002880 163 DADIGDD--------MLLSL------------NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (871)
Q Consensus 163 ~~~i~d~--------~l~~~------------~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~ 222 (871)
.|.+++- ..+.+ .+..++..|-.|+||+|+|.. +|+.+.+|.+|+.|.||+|++.-.
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~---LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM---LPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh---cCHHHHHHhhhhhhhcCCChhhHH
Confidence 7777651 11111 223334556666777777654 456677788888888888877322
Q ss_pred ccccchhHHhhcCCCcc---cccccccc----ccccccccccccccCCCCCCCcc----ccCCcCCccceeecCCccccc
Q 002880 223 CDHCMEDAILQGCPKLE---IYNSNFTI----NFGEWALGFCGEVYDKDNPSSLC----LRDRPLQSVTSLDLSNRCIHN 291 (871)
Q Consensus 223 ~~~~~~~~i~~~lp~Le---~lnl~~t~----~~~~~~l~~~~~~~~~~~~~~i~----~~~~~l~~L~~LdLS~N~I~~ 291 (871)
. +..+|.++ +|-.+-|. |++. .+.-..++...+++.+-. .-...+.+|..|+||+|.|+.
T Consensus 189 Q--------LrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 189 Q--------LRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred H--------HhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee
Confidence 2 34455443 33333331 1111 122222333333332211 112346678888888888887
Q ss_pred cccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee--------CCCCCCc
Q 002880 292 LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD--------IPGPLGE 346 (871)
Q Consensus 292 l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~--------iP~~l~~ 346 (871)
+- -... ...+|++||||+|+|.. +|..+.++++|+.|.+. ||.-+|.
T Consensus 260 L~-~~~~--~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 260 LN-MTEG--EWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred ee-ccHH--HHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 71 1111 46788888888888875 45567777888777766 7766664
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=2.5e-12 Score=130.17 Aligned_cols=90 Identities=27% Similarity=0.399 Sum_probs=39.5
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee-CCC-CCCchhhHHhh
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD-IPG-PLGESAIEILE 353 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~-iP~-~l~~~~~~Il~ 353 (871)
++.|+.|+|++|.|+.+.+.... .+|+|+.|+|++|+|.++. ++ ..++.||+|+.|++. -|. ...++...|+.
T Consensus 63 L~~L~~L~L~~N~I~~i~~~l~~--~lp~L~~L~L~~N~I~~l~--~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~ 137 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSISEGLDK--NLPNLQELYLSNNKISDLN--EL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIY 137 (175)
T ss_dssp -TT--EEE--SS---S-CHHHHH--H-TT--EEE-TTS---SCC--CC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHH
T ss_pred hhhhhhcccCCCCCCccccchHH--hCCcCCEEECcCCcCCChH--Hh-HHHHcCCCcceeeccCCcccchhhHHHHHHH
Confidence 45566666666666655221111 3566666666666665533 22 234556666666665 221 23466688999
Q ss_pred hCCCcccccCcccchhh
Q 002880 354 SLPTLCTLNGVTASKIL 370 (871)
Q Consensus 354 ~L~~L~~Ln~~~vs~~~ 370 (871)
.+|+|+.|||..|++..
T Consensus 138 ~lP~Lk~LD~~~V~~~E 154 (175)
T PF14580_consen 138 KLPSLKVLDGQDVTEEE 154 (175)
T ss_dssp H-TT-SEETTEETTS-B
T ss_pred HcChhheeCCEEccHHH
Confidence 99999999999999553
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.17 E-value=2.3e-11 Score=154.01 Aligned_cols=192 Identities=18% Similarity=0.160 Sum_probs=116.6
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
++.|+|++|.+..... .....+++|+.|+|++|+++. .+|..+.++++|+.|+|++|.+.+..+ .....+
T Consensus 382 L~~L~l~~n~l~~~~p---~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l 451 (968)
T PLN00113 382 LFKLILFSNSLEGEIP---KSLGACRSLRRVRLQDNSFSG--ELPSEFTKLPLVYFLDISNNNLQGRIN-----SRKWDM 451 (968)
T ss_pred CCEEECcCCEecccCC---HHHhCCCCCCEEECcCCEeee--ECChhHhcCCCCCEEECcCCcccCccC-----hhhccC
Confidence 4445555554433111 122456777777777777763 345667777788888888887765432 222356
Q ss_pred CCcccccccccccccccc-ccccccccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCcceEe
Q 002880 236 PKLEIYNSNFTINFGEWA-LGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN 309 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~-l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~Ln 309 (871)
++|+.++++.+...+... .....++..+++.++-.. ....+++|+.|+|++|.+.+.+|..+. .+++|+.|+
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ 529 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS--SCKKLVSLD 529 (968)
T ss_pred CCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHc--CccCCCEEE
Confidence 777777765543221110 001122222333222211 123467888888888888888887777 788888888
Q ss_pred ccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCCcccccCcccc
Q 002880 310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 310 Ls~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~Ln~~~vs 367 (871)
|++|.+.+ .++..++++++|++|+|+-.. ..+.++..+.++..|..++++
T Consensus 530 Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~----l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 530 LSHNQLSG----QIPASFSEMPVLSQLDLSQNQ----LSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred CCCCcccc----cCChhHhCcccCCEEECCCCc----ccccCChhHhcCcccCEEecc
Confidence 88888887 556677888888888887221 123456666677777777776
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.15 E-value=1.7e-11 Score=138.75 Aligned_cols=155 Identities=20% Similarity=0.150 Sum_probs=102.5
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
-.++.|+|++|.|++.. .+....+.+|..|.|+.|.|+.++ +..|.+|++|+.|+|+.|+|...+ ...+.
T Consensus 173 ~ni~~L~La~N~It~l~---~~~F~~lnsL~tlkLsrNrittLp--~r~Fk~L~~L~~LdLnrN~irive-----~ltFq 242 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLE---TGHFDSLNSLLTLKLSRNRITTLP--QRSFKRLPKLESLDLNRNRIRIVE-----GLTFQ 242 (873)
T ss_pred CCceEEeeccccccccc---cccccccchheeeecccCcccccC--HHHhhhcchhhhhhccccceeeeh-----hhhhc
Confidence 45788888888887733 233455668888888888888764 366777888888888888885443 22245
Q ss_pred cCCCcccccccccccc--ccccccccccccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCcc
Q 002880 234 GCPKLEIYNSNFTINF--GEWALGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS 306 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~--~~~~l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~ 306 (871)
+++.|+.+.++.++.. ...+.--|..+..+++..+-.. ...+|++|+.|+||.|.|..+.++... -+++|+
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws--ftqkL~ 320 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS--FTQKLK 320 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh--hcccce
Confidence 6777776666555432 2222333445555555433322 356678888888888888887776666 577888
Q ss_pred eEeccCCCCCCcch
Q 002880 307 HLNIRGNPLEQNSV 320 (871)
Q Consensus 307 ~LnLs~N~L~~l~~ 320 (871)
.|+||.|+|..++.
T Consensus 321 ~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 321 ELDLSSNRITRLDE 334 (873)
T ss_pred eEeccccccccCCh
Confidence 88888888877663
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.12 E-value=6.7e-11 Score=149.84 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=123.3
Q ss_pred ChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccccccccccccc
Q 002880 97 VPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNL 176 (871)
Q Consensus 97 ~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~l~~~~l 176 (871)
+|....+|.+|.-+|++.|.-...++.. + -.+...++.|+|++|++.... +
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~---------------~---------~~~l~~L~~L~Ls~n~l~~~~--p--- 135 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDD---------------I---------FTTSSSLRYLNLSNNNFTGSI--P--- 135 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChH---------------H---------hccCCCCCEEECcCCcccccc--C---
Confidence 3555667778888888776210011110 0 012356889999999886421 1
Q ss_pred cccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccc--ccc
Q 002880 177 SSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE--WAL 254 (871)
Q Consensus 177 ~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~--~~l 254 (871)
...+++|+.|+|++|.++. .+|..+++|++|+.|+|++|.+.+..+. ....+++|+.++++.+...+. ..+
T Consensus 136 ~~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-----~~~~l~~L~~L~L~~n~l~~~~p~~l 208 (968)
T PLN00113 136 RGSIPNLETLDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPN-----SLTNLTSLEFLTLASNQLVGQIPREL 208 (968)
T ss_pred ccccCCCCEEECcCCcccc--cCChHHhcCCCCCEEECccCcccccCCh-----hhhhCcCCCeeeccCCCCcCcCChHH
Confidence 1357889999999998873 3567788899999999999988654422 234677888887765432211 112
Q ss_pred cccccccCCCCCCCc-----cccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcC
Q 002880 255 GFCGEVYDKDNPSSL-----CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG 329 (871)
Q Consensus 255 ~~~~~~~~~~~~~~i-----~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~ 329 (871)
..+.++..+++..+- ......+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+.+ .++..+.+
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~----~~p~~l~~ 282 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSG----PIPPSIFS 282 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeec----cCchhHhh
Confidence 222333333222221 11223466777777777777776666666 67777777777777765 34556667
Q ss_pred CCCcceeEee
Q 002880 330 FPCLQSLGVD 339 (871)
Q Consensus 330 lp~L~~L~L~ 339 (871)
+++|++|+++
T Consensus 283 l~~L~~L~Ls 292 (968)
T PLN00113 283 LQKLISLDLS 292 (968)
T ss_pred ccCcCEEECc
Confidence 7777777776
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-11 Score=120.42 Aligned_cols=157 Identities=19% Similarity=0.320 Sum_probs=112.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
+.+..|.||.|.|+-. +.+ .+.+.+|+.|+|++|+|+. .|..++.|++|+.|+++-|++. ..+.-+.
T Consensus 33 s~ITrLtLSHNKl~~v---ppn-ia~l~nlevln~~nnqie~---lp~~issl~klr~lnvgmnrl~------~lprgfg 99 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV---PPN-IAELKNLEVLNLSNNQIEE---LPTSISSLPKLRILNVGMNRLN------ILPRGFG 99 (264)
T ss_pred hhhhhhhcccCceeec---CCc-HHHhhhhhhhhcccchhhh---cChhhhhchhhhheecchhhhh------cCccccC
Confidence 3466677777776542 112 2346778888888888764 4667888888888888888773 2233345
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.||.||++++.++. +....+|++++. ++.|..|-|++|.+.-++| ..+ ++++|+.|.|+.|
T Consensus 100 s~p~levldltynn------------l~e~~lpgnff~----m~tlralyl~dndfe~lp~-dvg--~lt~lqil~lrdn 160 (264)
T KOG0617|consen 100 SFPALEVLDLTYNN------------LNENSLPGNFFY----MTTLRALYLGDNDFEILPP-DVG--KLTNLQILSLRDN 160 (264)
T ss_pred CCchhhhhhccccc------------cccccCCcchhH----HHHHHHHHhcCCCcccCCh-hhh--hhcceeEEeeccC
Confidence 78888888877653 334455666665 8889999999999988844 445 7999999999999
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee------CCCCCCch
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD------IPGPLGES 347 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~------iP~~l~~~ 347 (871)
.+-+ +|..++.+++|++|++. +|+++++.
T Consensus 161 dll~-----lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 161 DLLS-----LPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred chhh-----CcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 9885 45678888999999987 66655543
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.02 E-value=8.9e-11 Score=133.07 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=115.2
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
++.||||.|.|++..+.+ .-.-++|++|+|++|.|++++. ..|..|.+|..|.||.|.++.. +..+++.+
T Consensus 151 lrslDLSrN~is~i~~~s---fp~~~ni~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittL-----p~r~Fk~L 220 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPS---FPAKVNIKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTL-----PQRSFKRL 220 (873)
T ss_pred hhhhhhhhchhhcccCCC---CCCCCCceEEeecccccccccc--ccccccchheeeecccCccccc-----CHHHhhhc
Confidence 667777777776632222 2233679999999999998765 6788888999999999999554 47778889
Q ss_pred CCccccccccccccccccccc--cccccCCCC-CCCcccc----CCcCCccceeecCCccccccccccCCCCCCCCcceE
Q 002880 236 PKLEIYNSNFTINFGEWALGF--CGEVYDKDN-PSSLCLR----DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHL 308 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~--~~~~~~~~~-~~~i~~~----~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~L 308 (871)
|+|+.|++.++..---..+-| ..++..+.+ .+++..- -..+.+++.|+|+.|+++..-...+- .|++|++|
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L 298 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQL 298 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc--ccchhhhh
Confidence 999999988774321111111 112222222 2333221 23467888999999999887555544 68999999
Q ss_pred eccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 309 nLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+||.|.|..+..+ .-.-+++|+.|+|+
T Consensus 299 ~lS~NaI~rih~d----~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 299 DLSYNAIQRIHID----SWSFTQKLKELDLS 325 (873)
T ss_pred ccchhhhheeecc----hhhhcccceeEecc
Confidence 9999998876643 44668999999998
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=4.1e-10 Score=114.05 Aligned_cols=129 Identities=27% Similarity=0.390 Sum_probs=54.4
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
...+.|+|++|+|+.. . .+...+.+|+.|+|++|+|++++ .+..|++|+.|+|++|.|+... ..+..
T Consensus 19 ~~~~~L~L~~n~I~~I--e--~L~~~l~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~i~-----~~l~~ 85 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--E--NLGATLDKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISSIS-----EGLDK 85 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T----T----TT--EEE--SS---S-C-----HHHHH
T ss_pred cccccccccccccccc--c--chhhhhcCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCccc-----cchHH
Confidence 4578899999999862 1 23346789999999999999765 4778999999999999996543 11111
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcccccccc-ccCCCCCCCCcceEeccC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs~ 312 (871)
. +++|+.|+|++|+|..+.. ..+. .+++|+.|+|.+
T Consensus 86 ~-----------------------------------------lp~L~~L~L~~N~I~~l~~l~~L~--~l~~L~~L~L~~ 122 (175)
T PF14580_consen 86 N-----------------------------------------LPNLQELYLSNNKISDLNELEPLS--SLPKLRVLSLEG 122 (175)
T ss_dssp H------------------------------------------TT--EEE-TTS---SCCCCGGGG--G-TT--EEE-TT
T ss_pred h-----------------------------------------CCcCCEEECcCCcCCChHHhHHHH--cCCCcceeeccC
Confidence 1 5669999999999998744 3444 799999999999
Q ss_pred CCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 313 NPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 313 N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+++.... ==.-.+..+|+|+.|+-.
T Consensus 123 NPv~~~~~-YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 123 NPVCEKKN-YRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -GGGGSTT-HHHHHHHH-TT-SEETTE
T ss_pred Ccccchhh-HHHHHHHHcChhheeCCE
Confidence 99986431 113457789999999977
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.90 E-value=4.1e-10 Score=128.10 Aligned_cols=192 Identities=22% Similarity=0.263 Sum_probs=110.5
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
++.|+||+|.|++..+- ...+.+|++|+||.|+|+. +|.++++|++|+.|-+++|+++-
T Consensus 247 LrrLNLS~N~iteL~~~----~~~W~~lEtLNlSrNQLt~---LP~avcKL~kL~kLy~n~NkL~F-------------- 305 (1255)
T KOG0444|consen 247 LRRLNLSGNKITELNMT----EGEWENLETLNLSRNQLTV---LPDAVCKLTKLTKLYANNNKLTF-------------- 305 (1255)
T ss_pred hheeccCcCceeeeecc----HHHHhhhhhhccccchhcc---chHHHhhhHHHHHHHhccCcccc--------------
Confidence 55566666666542221 1334566666666666654 34556666666666666665521
Q ss_pred CCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
.++++|+..|.+|+.+..++|.+.=. |+.++ .|+.|+.|+|++|+|
T Consensus 306 -------------------------------eGiPSGIGKL~~Levf~aanN~LElV-PEglc--RC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 306 -------------------------------EGIPSGIGKLIQLEVFHAANNKLELV-PEGLC--RCVKLQKLKLDHNRL 351 (1255)
T ss_pred -------------------------------cCCccchhhhhhhHHHHhhccccccC-chhhh--hhHHHHHhcccccce
Confidence 12333455588889999998887655 88777 899999999999999
Q ss_pred CCcchHHHHHHhcCCCCcceeEee------CCCCCCchh-----hHHhhhCCCcccccC---cccchhhccccccccccc
Q 002880 316 EQNSVRELLEVLKGFPCLQSLGVD------IPGPLGESA-----IEILESLPTLCTLNG---VTASKILEEGKHVIDSML 381 (871)
Q Consensus 316 ~~l~~~~i~~~l~~lp~L~~L~L~------iP~~l~~~~-----~~Il~~L~~L~~Ln~---~~vs~~~~~~~~~~~~~l 381 (871)
.++| ..+.-+|.|+.|+|. .|+.-.+.. +.|-.+|.+-..|-| ..+-.-.-.+..--|++-
T Consensus 352 iTLP-----eaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pasv~~s~~sg~~pkD~~A 426 (1255)
T KOG0444|consen 352 ITLP-----EAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPASVISSVHSGGAPKDALA 426 (1255)
T ss_pred eech-----hhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCccccccccccCCCCCchHH
Confidence 8644 556678999999998 333222221 445556666666666 221111111111101100
Q ss_pred ---CCCCCCCCCCchhHHHHHHHHHHHhh
Q 002880 382 ---QPRLPEWSADQPLADRVLSAMWLYLM 407 (871)
Q Consensus 382 ---~~~~~~~~~~~~l~~~Vl~~mW~y~~ 407 (871)
.-|--.=+.++..++.|++-|-.-.+
T Consensus 427 RK~rlRRrk~sa~dq~A~kVlkGMsdvA~ 455 (1255)
T KOG0444|consen 427 RKERLRRRKQSADDQSADKVLKGMSDVAG 455 (1255)
T ss_pred HHHHHhhCcccccchhHHHHHhhhHHhhc
Confidence 00000125667778888888876544
No 17
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.7e-09 Score=114.71 Aligned_cols=203 Identities=23% Similarity=0.235 Sum_probs=128.3
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
++.|.|.+|.|+..+- ..-+.+.|..+..|+|.+|+|+.|.+|...+.+||.|+.|+||.|++..... .+ +.-+
T Consensus 47 ~ellvln~~~id~~gd-~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~l----p~p~ 120 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGD-VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SL----PLPL 120 (418)
T ss_pred hhhheecCCCCCcchh-HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cC----cccc
Confidence 4477788888876442 2235678999999999999999999999999999999999999999976551 11 1112
Q ss_pred CCcccccccccccc-----------ccc-ccccccccc--CCCCCCCccc-----------------------cCCcCCc
Q 002880 236 PKLEIYNSNFTINF-----------GEW-ALGFCGEVY--DKDNPSSLCL-----------------------RDRPLQS 278 (871)
Q Consensus 236 p~Le~lnl~~t~~~-----------~~~-~l~~~~~~~--~~~~~~~i~~-----------------------~~~~l~~ 278 (871)
.+|..+-++-|+.. |.. ++....+.+ ...-.+|+.. -..-.++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 24444443333221 100 000000000 0000011100 0122345
Q ss_pred cceeecCCcccccccc-ccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee-CCC--CCC--chhhHHh
Q 002880 279 VTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD-IPG--PLG--ESAIEIL 352 (871)
Q Consensus 279 L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~-iP~--~l~--~~~~~Il 352 (871)
+..+-+..|.|.+... +.+- .+|.+..|||+.|+|.+| ..+ ..+.+||+|..|++. +|- ++. ....-++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se--~~p~~~~LnL~~~~idsw--asv-D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSE--PFPSLSCLNLGANNIDSW--ASV-DALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred chheeeecCcccchhhcccCC--CCCcchhhhhcccccccH--HHH-HHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 5566666666655533 2222 689999999999999983 343 466999999999999 552 222 2225688
Q ss_pred hhCCCcccccCcccchh
Q 002880 353 ESLPTLCTLNGVTASKI 369 (871)
Q Consensus 353 ~~L~~L~~Ln~~~vs~~ 369 (871)
++|++++.|||..+|+.
T Consensus 276 aRL~~v~vLNGskIss~ 292 (418)
T KOG2982|consen 276 ARLTKVQVLNGSKISSR 292 (418)
T ss_pred eeccceEEecCcccchh
Confidence 99999999999999844
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.84 E-value=9.8e-09 Score=112.74 Aligned_cols=65 Identities=29% Similarity=0.411 Sum_probs=31.5
Q ss_pred eeEEeeccccccccccccc-cccccC-CCCcEeeccCCccc--cHHHHHHHHhcCCCCCeeeCCCCccc
Q 002880 156 VKWLELEDADIGDDMLLSL-NLSSKF-PDLQALSLCGNKLE--TVEIIVQEVTKLKNLRALWLNNNPVL 220 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~-~l~~~~-p~L~~L~Ls~N~L~--~~~~i~~~l~~L~~Lk~L~Ls~N~l~ 220 (871)
++.|+|++|.+++.....+ .....+ ++|+.|+|++|.++ ....+...+..+++|+.|+|++|.+.
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 5555555555554222211 112233 55566666666555 22233444555555666666655553
No 19
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.81 E-value=2.1e-10 Score=132.75 Aligned_cols=172 Identities=22% Similarity=0.298 Sum_probs=128.9
Q ss_pred HHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccccccccc
Q 002880 93 QLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLL 172 (871)
Q Consensus 93 ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~l~ 172 (871)
++..+-+|+.+|.-|.|. .+...+.+++..||++.+++ +.|+.|...++..+.+.
T Consensus 123 ~~~GL~~lr~qLe~LIC~---------------------~Sl~Al~~v~ascggd~~ns----~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 123 TAKGLQELRHQLEKLICH---------------------NSLDALRHVFASCGGDISNS----PVWNKLATASFSYNRLV 177 (1096)
T ss_pred hhhhhHHHHHhhhhhhhh---------------------ccHHHHHHHHHHhccccccc----hhhhhHhhhhcchhhHH
Confidence 478888999999999988 34566888999999999887 89999998888888888
Q ss_pred ccccc-ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccc
Q 002880 173 SLNLS-SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE 251 (871)
Q Consensus 173 ~~~l~-~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~ 251 (871)
.+|-+ .-+|.|+.|+|++|+++.+ ..+..|++|++|||+.|.+.... .+.. .+|. |..|+++-+-...
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp--~l~~---~gc~-L~~L~lrnN~l~t- 246 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVP--QLSM---VGCK-LQLLNLRNNALTT- 246 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhcccc--ccch---hhhh-heeeeecccHHHh-
Confidence 88754 5569999999999999965 47999999999999999995543 2222 1222 4444433111000
Q ss_pred ccccccccccCCCCCCCccccCCcCCccceeecCCcccccccc-ccCCCCCCCCcceEeccCCCCCCcch
Q 002880 252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSV 320 (871)
Q Consensus 252 ~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs~N~L~~l~~ 320 (871)
..|+.+|.+|..||||.|.|++... .-+. .|..|..|+|-||+|..-++
T Consensus 247 ------------------L~gie~LksL~~LDlsyNll~~hseL~pLw--sLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 247 ------------------LRGIENLKSLYGLDLSYNLLSEHSELEPLW--SLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred ------------------hhhHHhhhhhhccchhHhhhhcchhhhHHH--HHHHHHHHhhcCCccccCHH
Confidence 1134458889999999999988733 1222 57889999999999987664
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.78 E-value=2.2e-09 Score=117.69 Aligned_cols=191 Identities=27% Similarity=0.311 Sum_probs=116.2
Q ss_pred HHHHHhhChhHHHHHHh---hhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccc
Q 002880 90 AFSQLQEVPGLAQRMAS---LMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADI 166 (871)
Q Consensus 90 ~~~ql~~~p~L~~rl~~---l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i 166 (871)
-..|+..+|.-+-.-+. ...|+++.| ++.|+|.. .....+. +.-++++.+.|
T Consensus 370 s~~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~---------L~~lkel---------------vT~l~lsnn~i 424 (565)
T KOG0472|consen 370 SDKQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKR---------LVELKEL---------------VTDLVLSNNKI 424 (565)
T ss_pred cccccccCCHHHHHHhhhcceEEEecccc-hHhhhhhh---------hHHHHHH---------------HHHHHhhcCcc
Confidence 34567777777666666 555566666 66666662 1111111 11233444444
Q ss_pred cccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccc
Q 002880 167 GDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFT 246 (871)
Q Consensus 167 ~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t 246 (871)
+-.+ . ..+.+++|.-|+|++|-|.+ +|..++.+-.|+.||||.|.+.. +|+
T Consensus 425 sfv~---~-~l~~l~kLt~L~L~NN~Ln~---LP~e~~~lv~Lq~LnlS~NrFr~-------------lP~--------- 475 (565)
T KOG0472|consen 425 SFVP---L-ELSQLQKLTFLDLSNNLLND---LPEEMGSLVRLQTLNLSFNRFRM-------------LPE--------- 475 (565)
T ss_pred ccch---H-HHHhhhcceeeecccchhhh---cchhhhhhhhhheeccccccccc-------------chH---------
Confidence 4322 1 23457888888888888765 45667777778888888887721 111
Q ss_pred cccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHH
Q 002880 247 INFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV 326 (871)
Q Consensus 247 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~ 326 (871)
++-. +..|+.+-.|+|+|....++.+. .+.+|..|||.+|.|.+ ||+.
T Consensus 476 ---------------------~~y~----lq~lEtllas~nqi~~vd~~~l~--nm~nL~tLDL~nNdlq~-----IPp~ 523 (565)
T KOG0472|consen 476 ---------------------CLYE----LQTLETLLASNNQIGSVDPSGLK--NMRNLTTLDLQNNDLQQ-----IPPI 523 (565)
T ss_pred ---------------------HHhh----HHHHHHHHhccccccccChHHhh--hhhhcceeccCCCchhh-----CChh
Confidence 1111 45566777777888777666555 67788888888887774 4566
Q ss_pred hcCCCCcceeEee-CCCCCCchhhHHhhhCCCcccccCcccchhhcccccccccccCCCCC
Q 002880 327 LKGFPCLQSLGVD-IPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLP 386 (871)
Q Consensus 327 l~~lp~L~~L~L~-iP~~l~~~~~~Il~~L~~L~~Ln~~~vs~~~~~~~~~~~~~l~~~~~ 386 (871)
+++|++|++|.++ -|-..+-. -++-++..++.+++..|+|
T Consensus 524 LgnmtnL~hLeL~gNpfr~Pr~--------------------~iLmkgT~aiL~ylrdrIp 564 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFRQPRH--------------------QILMKGTAAILSYLRDRIP 564 (565)
T ss_pred hccccceeEEEecCCccCCCHH--------------------HHhccChHHHHHHhcccCC
Confidence 7888888888877 33221111 2455666777788877776
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=1.2e-08 Score=124.31 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHhhhccc-----------cCCCceEEEE
Q 002880 25 SGLPQSLHRQLFQKLTTETF-----------DAGSYFKIEV 54 (871)
Q Consensus 25 ~~~p~~~~~~l~~kl~~~~f-----------d~g~~f~i~~ 54 (871)
.|.-++=...-|+||..=.| +.+++|-|..
T Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (788)
T PRK15387 61 AGTTREDVINRFELLRTLAYAGWEESIHSGQHGENYFCILD 101 (788)
T ss_pred CCCCHHHHHHHHHHHHHHhcccHHhhhhcccCCCceEEEeC
Confidence 56777888888888876554 5578888863
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=7.5e-09 Score=125.92 Aligned_cols=73 Identities=23% Similarity=0.180 Sum_probs=46.1
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhC
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESL 355 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L 355 (871)
+.+|+.|+|++|.|+++ |. ..++|+.|+|++|+|.++|. . +.+|+.|+++-. ....+|..+
T Consensus 381 ~~~L~~LdLs~N~Lt~L-P~-----l~s~L~~LdLS~N~LssIP~-----l---~~~L~~L~Ls~N-----qLt~LP~sl 441 (788)
T PRK15387 381 PSGLKELIVSGNRLTSL-PV-----LPSELKELMVSGNRLTSLPM-----L---PSGLLSLSVYRN-----QLTRLPESL 441 (788)
T ss_pred ccccceEEecCCcccCC-CC-----cccCCCEEEccCCcCCCCCc-----c---hhhhhhhhhccC-----cccccChHH
Confidence 35688888888888876 32 24678888999998887552 1 245666776611 111355555
Q ss_pred CCcccccCcccc
Q 002880 356 PTLCTLNGVTAS 367 (871)
Q Consensus 356 ~~L~~Ln~~~vs 367 (871)
.+|..|..++++
T Consensus 442 ~~L~~L~~LdLs 453 (788)
T PRK15387 442 IHLSSETTVNLE 453 (788)
T ss_pred hhccCCCeEECC
Confidence 556666666665
No 23
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.74 E-value=3.8e-08 Score=101.36 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc---
Q 002880 604 MKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME--- 678 (871)
Q Consensus 604 ~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~--- 678 (871)
+|-.....++++ |-| +|+|+...+ +..+|++.+. +...|+||..+++|+|+.++++.++....++
T Consensus 3 dK~~~~~~l~~~-gip--vP~t~~~~~~~~~~~~~~~~~-------~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~ 72 (190)
T PF08443_consen 3 DKLLTLQLLAKA-GIP--VPETRVTNSPEEAKEFIEELG-------GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFK 72 (190)
T ss_dssp BHHHHHHHHHHT-T-------EEEESSHHHHHHHHHHH---------SSEEEE-SB-------EEEESHCHHHHHHH---
T ss_pred CHHHHHHHHHHC-CcC--CCCEEEECCHHHHHHHHHHhc-------CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHH
Confidence 455555666554 433 699987754 4556665541 3568999999999999999999887776643
Q ss_pred --cCCcccccccccccccCCceeeeeEEEE
Q 002880 679 --TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 679 --~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
..+.++|+||+.+ +| -|+|++|+
T Consensus 73 ~~~~~~~~Q~fI~~~---~g--~d~Rv~Vi 97 (190)
T PF08443_consen 73 RLENPILVQEFIPKD---GG--RDLRVYVI 97 (190)
T ss_dssp --TTT-EEEE----S---S-----EEEEEE
T ss_pred hccCcceEeccccCC---CC--cEEEEEEE
Confidence 3688999999952 11 59999988
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.4e-09 Score=115.24 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=96.1
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.+..||||.|.|+...- --.-.|.++.|+||+|.|..+ ..+..|++|..||||+|.++... ++
T Consensus 285 ~LtelDLS~N~I~~iDE----SvKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~Ls~~~--Gw------- 347 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDE----SVKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNLLAECV--GW------- 347 (490)
T ss_pred hhhhccccccchhhhhh----hhhhccceeEEeccccceeee----hhhhhcccceEeecccchhHhhh--hh-------
Confidence 36677777776654210 112347888888888888744 44777888888888888775433 00
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~ 314 (871)
...+-++++|+|++|.|..+. .+. ++-+|.+||+++|+
T Consensus 348 --------------------------------------h~KLGNIKtL~La~N~iE~LS--GL~--KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 348 --------------------------------------HLKLGNIKTLKLAQNKIETLS--GLR--KLYSLVNLDLSSNQ 385 (490)
T ss_pred --------------------------------------HhhhcCEeeeehhhhhHhhhh--hhH--hhhhheeccccccc
Confidence 122667899999999988772 233 68889999999999
Q ss_pred CCCcchHHHHHHhcCCCCcceeEee-CCC-CCCchhhHHhhhCCC
Q 002880 315 LEQNSVRELLEVLKGFPCLQSLGVD-IPG-PLGESAIEILESLPT 357 (871)
Q Consensus 315 L~~l~~~~i~~~l~~lp~L~~L~L~-iP~-~l~~~~~~Il~~L~~ 357 (871)
|..+. -...++++|.|+.|.|- .|- -+.++..++++.++.
T Consensus 386 Ie~ld---eV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGE 427 (490)
T KOG1259|consen 386 IEELD---EVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGE 427 (490)
T ss_pred hhhHH---HhcccccccHHHHHhhcCCCccccchHHHHHHHHHhh
Confidence 98733 23567999999999987 332 233566777776654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=2e-08 Score=110.23 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=57.8
Q ss_pred eeEEeecccccccccccccc-ccccCCCCcEeeccCCcccc----HHHHHHHHhcCCCCCeeeCCCCcccccccccchhH
Q 002880 156 VKWLELEDADIGDDMLLSLN-LSSKFPDLQALSLCGNKLET----VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~-l~~~~p~L~~L~Ls~N~L~~----~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~ 230 (871)
++.|+|++|++++.....+. ....+|+|+.|++++|.+.. +..++..+.++++|+.|+|++|.+.+..+..+. .
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE-S 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH-H
Confidence 78888888888775443332 34567788888888888762 344566777888888888888888643321222 2
Q ss_pred HhhcCCCccccccccc
Q 002880 231 ILQGCPKLEIYNSNFT 246 (871)
Q Consensus 231 i~~~lp~Le~lnl~~t 246 (871)
+... ++|+.++++.+
T Consensus 104 l~~~-~~L~~L~ls~~ 118 (319)
T cd00116 104 LLRS-SSLQELKLNNN 118 (319)
T ss_pred Hhcc-CcccEEEeeCC
Confidence 2223 45777776544
No 26
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.71 E-value=1e-07 Score=103.10 Aligned_cols=89 Identities=24% Similarity=0.110 Sum_probs=62.4
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|..+.+.++++ |- -.|+|+.+.+ ++.++++.+ +-.+|+||..++.|+|+.++++.+++....+
T Consensus 85 ~~~dK~~~~~~l~~~-gi--~~P~t~~~~~~~~~~~~~~~~--------~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~ 153 (277)
T TIGR00768 85 NAGDKFLTSQLLAKA-GL--PQPRTGLAGSPEEALKLIEEI--------GFPVVLKPVFGSWGRLVSLARDKQAAETLLE 153 (277)
T ss_pred HHhhHHHHHHHHHHC-CC--CCCCEEEeCCHHHHHHHHHhc--------CCCEEEEECcCCCCCceEEEcCHHHHHHHHH
Confidence 457777777777654 32 3688887754 334444332 2479999999999999999998877654321
Q ss_pred --------cCCcccccccccccccCCce-eeeeEEEE
Q 002880 679 --------TGPKICQKYIEFPALFQGRK-FDLRYIVL 706 (871)
Q Consensus 679 --------~~~~IvQkYI~~PlLi~grK-FDlR~yVL 706 (871)
.+++++|+||+. .. +|+|++++
T Consensus 154 ~~~~~~~~~~~~lvQe~I~~------~~~~~~rv~v~ 184 (277)
T TIGR00768 154 HFEQLNGPQNLFYVQEYIKK------PGGRDIRVFVV 184 (277)
T ss_pred HHHHhcccCCcEEEEeeecC------CCCceEEEEEE
Confidence 137999999983 33 69999875
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.65 E-value=5.5e-09 Score=124.45 Aligned_cols=244 Identities=19% Similarity=0.198 Sum_probs=141.1
Q ss_pred CCCcEEEEEeeeecc----chHHHHHHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchh--hHHHhhh
Q 002880 72 KESNVFLVDHAWTFR----LSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVE--DILESEI 145 (871)
Q Consensus 72 ~~~~iflidhawt~~----~~~~~~ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 145 (871)
+++-+--+||+.... .+--++++.++|..+...++|.-++...| .+-+++. ++....++. .+--.+.
T Consensus 227 ~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~------ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 227 DHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPL------RISRITSLVSLSAAYNEL 299 (1081)
T ss_pred ccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHH------HHhhhhhHHHHHhhhhhh
Confidence 344455677776654 35557788899988888888888766555 3333333 111111111 0011112
Q ss_pred ccccc--CCCCceeEEeeccccccccc---cccccc-------c------------ccCCCCcEeeccCCccccHHHHHH
Q 002880 146 HNATE--KGDGTVKWLELEDADIGDDM---LLSLNL-------S------------SKFPDLQALSLCGNKLETVEIIVQ 201 (871)
Q Consensus 146 ~~~~~--~~~~~l~~L~L~~~~i~d~~---l~~~~l-------~------------~~~p~L~~L~Ls~N~L~~~~~i~~ 201 (871)
..... +|-..++.|+|..|+|.+.. +..+.. + ..++.|+.|.|.+|.|++ .+.+
T Consensus 300 ~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd--~c~p 377 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD--SCFP 377 (1081)
T ss_pred hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc--cchh
Confidence 22222 22367999999999888732 111111 1 123568899999999994 5778
Q ss_pred HHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccc---------ccccccccccccCCCCCCCcccc
Q 002880 202 EVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF---------GEWALGFCGEVYDKDNPSSLCLR 272 (871)
Q Consensus 202 ~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~---------~~~~l~~~~~~~~~~~~~~i~~~ 272 (871)
.|.+.++||.|+|++|+|.. |+......++.||.|+++.+... +......|.++.....| .+.
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~-----fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~-- 449 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNS-----FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELA-- 449 (1081)
T ss_pred hhccccceeeeeeccccccc-----CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhh--
Confidence 89999999999999999943 55677788999999998765332 11222233344333333 222
Q ss_pred CCcCCccceeecCCccccccc-cccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCC
Q 002880 273 DRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (871)
Q Consensus 273 ~~~l~~L~~LdLS~N~I~~l~-p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP 341 (871)
.++.|+.+|||-|+|+... |.... -|+|++|||+||.=..++- ..+..|.++...+++++
T Consensus 450 --~l~qL~~lDlS~N~L~~~~l~~~~p---~p~LkyLdlSGN~~l~~d~----~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 450 --QLPQLKVLDLSCNNLSEVTLPEALP---SPNLKYLDLSGNTRLVFDH----KTLKVLKSLSQMDITLN 510 (1081)
T ss_pred --hcCcceEEecccchhhhhhhhhhCC---CcccceeeccCCcccccch----hhhHHhhhhhheecccC
Confidence 3666666666666666542 22221 2666666666666222111 12334455555555533
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=9.3e-09 Score=109.06 Aligned_cols=108 Identities=31% Similarity=0.384 Sum_probs=86.4
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
-+++.|+||.|+|.... -.+.+++|+.|+||+|.|++++ ..=.+|.|++.|.|++|.|....
T Consensus 307 Pkir~L~lS~N~i~~v~-----nLa~L~~L~~LDLS~N~Ls~~~---Gwh~KLGNIKtL~La~N~iE~LS---------- 368 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQ-----NLAELPQLQLLDLSGNLLAECV---GWHLKLGNIKTLKLAQNKIETLS---------- 368 (490)
T ss_pred cceeEEeccccceeeeh-----hhhhcccceEeecccchhHhhh---hhHhhhcCEeeeehhhhhHhhhh----------
Confidence 35899999999997632 2456899999999999998654 34567889999999999883322
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcccccccc-ccCCCCCCCCcceEeccC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs~ 312 (871)
|...+-+|..||+++|+|..+-. ..++ .+|.|+.|.|.+
T Consensus 369 --------------------------------------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG--~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 369 --------------------------------------GLRKLYSLVNLDLSSNQIEELDEVNHIG--NLPCLETLRLTG 408 (490)
T ss_pred --------------------------------------hhHhhhhheeccccccchhhHHHhcccc--cccHHHHHhhcC
Confidence 22337789999999999998843 4455 899999999999
Q ss_pred CCCCCcc
Q 002880 313 NPLEQNS 319 (871)
Q Consensus 313 N~L~~l~ 319 (871)
|+|..++
T Consensus 409 NPl~~~v 415 (490)
T KOG1259|consen 409 NPLAGSV 415 (490)
T ss_pred CCccccc
Confidence 9999866
No 29
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.55 E-value=9.7e-07 Score=95.99 Aligned_cols=144 Identities=19% Similarity=0.123 Sum_probs=82.8
Q ss_pred ChHHHHHHHHcCCcEEe-----------CCC----CCceEEEeccCCcch-H--HhhhCCCCCcEEccccCCCcccccHH
Q 002880 546 DIPYVEEFLTRTEFVIT-----------TEP----KDADIIWTSLQVDED-M--KTATGITDQQYVNQFPFESCLVMKHH 607 (871)
Q Consensus 546 d~~~V~~~L~~~gf~~~-----------~~~----~~~di~W~~~~~~~~-~--~~~~~l~~~q~vN~fP~~~~lt~K~~ 607 (871)
+.+.+.+.|++.|++.. ++. .++|++......... . ........-..+|..........|..
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK~~ 90 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDKIF 90 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhHHH
Confidence 45678889999998753 111 234554442111100 1 00111112235565433344566666
Q ss_pred HHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh--------
Q 002880 608 LAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM-------- 677 (871)
Q Consensus 608 L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~-------- 677 (871)
....++++ |-| .|+|+.+.+ ++.++.+. .+-.+|+||..|+.|+|+.++.+.+++.+..
T Consensus 91 ~~~~l~~~-gip--~P~t~~~~~~~~~~~~~~~--------~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~ 159 (280)
T TIGR02144 91 TYLKLAKA-GVP--TPRTYLAFDREAALKLAEA--------LGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGG 159 (280)
T ss_pred HHHHHHHC-CcC--CCCeEeeCCHHHHHHHHHH--------cCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcC
Confidence 66666553 332 577776643 22222221 1245899999999999999999887765432
Q ss_pred -ccCCcccccccccccccCCceeeeeEEEE
Q 002880 678 -ETGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 678 -~~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
...++++|+||+.| -.|+|++|+
T Consensus 160 ~~~~~~ivQefI~~~------~~d~~v~vi 183 (280)
T TIGR02144 160 SQHKLFYIQEYINKP------GRDIRVFVI 183 (280)
T ss_pred CcCCeEEEEcccCCC------CCceEEEEE
Confidence 12468999999743 368999886
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.54 E-value=8.1e-09 Score=101.96 Aligned_cols=188 Identities=23% Similarity=0.309 Sum_probs=128.4
Q ss_pred cCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccc
Q 002880 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG 258 (871)
Q Consensus 179 ~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~ 258 (871)
...+++.|.||+|+|+. +|+.+..|.+|+.|++++|+|.+.. .-.+++|+|.++|+..+...
T Consensus 31 ~~s~ITrLtLSHNKl~~---vppnia~l~nlevln~~nnqie~lp------~~issl~klr~lnvgmnrl~--------- 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV---VPPNIAELKNLEVLNLSNNQIEELP------TSISSLPKLRILNVGMNRLN--------- 92 (264)
T ss_pred chhhhhhhhcccCceee---cCCcHHHhhhhhhhhcccchhhhcC------hhhhhchhhhheecchhhhh---------
Confidence 45788999999999985 5788999999999999999995543 23368999999987654321
Q ss_pred cccCCCCCCCccccCCcCCccceeecCCccccc-cccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeE
Q 002880 259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN-LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337 (871)
Q Consensus 259 ~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~-l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~ 337 (871)
-+|.++ ..++.|+.|||+.|+++. ..|..|- .++.|+.|+|++|.+.- +|.-++++++|+.|.
T Consensus 93 -----~lprgf----gs~p~levldltynnl~e~~lpgnff--~m~tlralyl~dndfe~-----lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 93 -----ILPRGF----GSFPALEVLDLTYNNLNENSLPGNFF--YMTTLRALYLGDNDFEI-----LPPDVGKLTNLQILS 156 (264)
T ss_pred -----cCcccc----CCCchhhhhhccccccccccCCcchh--HHHHHHHHHhcCCCccc-----CChhhhhhcceeEEe
Confidence 123333 348889999999999975 3354444 58899999999999774 455689999999999
Q ss_pred ee------CCCCCCchh------------hHHhhhCCCcccccCcccchhhcccccccccccCCCCCCCCCC-chhHHHH
Q 002880 338 VD------IPGPLGESA------------IEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSAD-QPLADRV 398 (871)
Q Consensus 338 L~------iP~~l~~~~------------~~Il~~L~~L~~Ln~~~vs~~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~V 398 (871)
+. +|.++|... .-+|..+.+|..+-...+-+. |+ ..|-+. +.....=
T Consensus 157 lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~-E~-------------NPwv~pIaeQf~lG 222 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRM-EE-------------NPWVNPIAEQFLLG 222 (264)
T ss_pred eccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhh-hh-------------CCCCChHHHHHHhh
Confidence 87 777776543 334555666554444333322 11 113332 2333334
Q ss_pred HHHHHHHhhe--eecCcc
Q 002880 399 LSAMWLYLMT--YRLANE 414 (871)
Q Consensus 399 l~~mW~y~~~--Y~~~~~ 414 (871)
..++|.|..+ |++-++
T Consensus 223 ~shV~~yirtetYky~yg 240 (264)
T KOG0617|consen 223 ISHVIDYIRTETYKYIYG 240 (264)
T ss_pred HHHHHHHHhhhhhhhhhc
Confidence 5788988665 665443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.2e-08 Score=109.88 Aligned_cols=144 Identities=20% Similarity=0.214 Sum_probs=102.9
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|.|++|||+.. ....+...||+|+.|+|++|....... ....-+..|+.|||++|++..... -.+..
T Consensus 197 ~~lK~L~l~~CGls~k--~V~~~~~~fPsl~~L~L~~N~~~~~~~--~~~~i~~~L~~LdLs~N~li~~~~----~~~~~ 268 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK--DVQWILLTFPSLEVLYLEANEIILIKA--TSTKILQTLQELDLSNNNLIDFDQ----GYKVG 268 (505)
T ss_pred hhhheEEeccCCCCHH--HHHHHHHhCCcHHHhhhhcccccceec--chhhhhhHHhhccccCCccccccc----ccccc
Confidence 3479999999999954 444588899999999999995322211 223456789999999999976652 12346
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCC-ccccCCcCCccceeecCCcccccccc-ccCCCCCCCCcceEecc
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSS-LCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR 311 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~-i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs 311 (871)
.||.|..+|++-||.... ..+.+ ...-.....+|++|+++.|+|..... ..+. .+++|+.|...
T Consensus 269 ~l~~L~~Lnls~tgi~si------------~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~--~l~nlk~l~~~ 334 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASI------------AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR--TLENLKHLRIT 334 (505)
T ss_pred cccchhhhhccccCcchh------------cCCCccchhhhcccccceeeecccCccccccccchhh--ccchhhhhhcc
Confidence 899999999998876522 11111 11112346789999999999977633 2232 68999999999
Q ss_pred CCCCCCcc
Q 002880 312 GNPLEQNS 319 (871)
Q Consensus 312 ~N~L~~l~ 319 (871)
+|.|....
T Consensus 335 ~n~ln~e~ 342 (505)
T KOG3207|consen 335 LNYLNKET 342 (505)
T ss_pred cccccccc
Confidence 99998744
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.43 E-value=1.8e-08 Score=110.69 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=111.6
Q ss_pred HHHHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccccccc
Q 002880 91 FSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDM 170 (871)
Q Consensus 91 ~~ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~ 170 (871)
.++|.+.|.-..++.++-.++.+.| .+.++++. +++. -.+..|+.+.+.+.+-.
T Consensus 77 ~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~------i~s~-------------------~~l~~l~~s~n~~~el~ 130 (565)
T KOG0472|consen 77 DNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQ------IGSL-------------------ISLVKLDCSSNELKELP 130 (565)
T ss_pred cchhhhCCHHHHHHHHHHHhhcccc-hHhhccHH------Hhhh-------------------hhhhhhhccccceeecC
Confidence 3678899999999999999988877 45556661 1111 12344555555554311
Q ss_pred cccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccc---c
Q 002880 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFT---I 247 (871)
Q Consensus 171 l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t---~ 247 (871)
+-...|-+|+.|+..+|+++++ |+.+..|.+|..|++.+|.+.... +.... ...|+.+|...+ .
T Consensus 131 ----~~i~~~~~l~dl~~~~N~i~sl---p~~~~~~~~l~~l~~~~n~l~~l~-----~~~i~-m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 131 ----DSIGRLLDLEDLDATNNQISSL---PEDMVNLSKLSKLDLEGNKLKALP-----ENHIA-MKRLKHLDCNSNLLET 197 (565)
T ss_pred ----chHHHHhhhhhhhccccccccC---chHHHHHHHHHHhhccccchhhCC-----HHHHH-HHHHHhcccchhhhhc
Confidence 1112345556666666666543 344555555555555555553322 11111 222222221111 0
Q ss_pred cc------ccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchH
Q 002880 248 NF------GEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVR 321 (871)
Q Consensus 248 ~~------~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~ 321 (871)
.. ......|...+....+| .+.. ++.|+.|.++.|+|.-++-+..+ .+++|..|||+.|+|..+|+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lP-ef~g----cs~L~Elh~g~N~i~~lpae~~~--~L~~l~vLDLRdNklke~Pd- 269 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLP-EFPG----CSLLKELHVGENQIEMLPAEHLK--HLNSLLVLDLRDNKLKEVPD- 269 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCC-CCCc----cHHHHHHHhcccHHHhhHHHHhc--ccccceeeeccccccccCch-
Confidence 00 00112233334444444 3333 77788888888888888445555 78899999999999887554
Q ss_pred HHHHHhcCCCCcceeEee
Q 002880 322 ELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 322 ~i~~~l~~lp~L~~L~L~ 339 (871)
.+-.+.+|+.|+++
T Consensus 270 ----e~clLrsL~rLDlS 283 (565)
T KOG0472|consen 270 ----EICLLRSLERLDLS 283 (565)
T ss_pred ----HHHHhhhhhhhccc
Confidence 34556788888888
No 33
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.41 E-value=4.5e-06 Score=84.24 Aligned_cols=88 Identities=22% Similarity=0.338 Sum_probs=57.3
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
+..|..+.+.++++ |-+ +|++..+.+ ++.++.... +..||+||..++.|+|+.++++.+++.+..+
T Consensus 2 ~~dK~~~~~~~~~~-gv~--~P~~~~~~~~~~~~~~~~~~--------~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~ 70 (184)
T PF13535_consen 2 CNDKYRMRELLKKA-GVP--VPKTRIVDSEEELRAFAEDL--------GFPFVVKPVDGSGSRGVFIVHSPEELEAALAE 70 (184)
T ss_dssp TCCHHHHHHHHHHH-TS------EEEECSHHHHHHHHHHS--------SSSEEEEESS-STTTT-EEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc-CcC--CCCEEEECCHHHHHHHHHHc--------CCCEEEEcCccccCCCEEEeCCHHHHHHHHHH
Confidence 46788888888765 433 788887765 344443332 2679999999999999999999888776532
Q ss_pred --------cCCcccccccccccccCCceeeeeEEEE
Q 002880 679 --------TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 679 --------~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
..++|||+||+ |.-|.+++++.
T Consensus 71 ~~~~~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 71 IREDSPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp HHHHHS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred HHHhcccCCccEEEEEeee------eeeEEEEEEEE
Confidence 25799999998 66677777655
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.41 E-value=5.2e-08 Score=116.32 Aligned_cols=145 Identities=21% Similarity=0.225 Sum_probs=68.1
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
++.|-|.+|.++|..... ..++++|+-|+|++|.|++++. ..+.+|..|+.|+||+|+++... .....|
T Consensus 361 Lq~LylanN~Ltd~c~p~---l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LSGNkL~~Lp------~tva~~ 429 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPV---LVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLSGNKLTTLP------DTVANL 429 (1081)
T ss_pred HHHHHHhcCcccccchhh---hccccceeeeeecccccccCCH--HHHhchHHhHHHhcccchhhhhh------HHHHhh
Confidence 445555555555544333 2345556666666665554433 34555555666666666553321 111233
Q ss_pred CCcccccccccc--ccccccccccccccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCcceE
Q 002880 236 PKLEIYNSNFTI--NFGEWALGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHL 308 (871)
Q Consensus 236 p~Le~lnl~~t~--~~~~~~l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~L 308 (871)
+.|+.|-.+.+. .+|+ +.....+..++++.+-.. ...+-++|++||||+|.-.-.-.+.|. .+.++...
T Consensus 430 ~~L~tL~ahsN~l~~fPe--~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~--~l~~l~~~ 505 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPE--LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLK--VLKSLSQM 505 (1081)
T ss_pred hhhHHHhhcCCceeechh--hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhH--Hhhhhhhe
Confidence 333333222111 1111 111112222222211111 111227999999999986444334444 56677777
Q ss_pred eccCCCC
Q 002880 309 NIRGNPL 315 (871)
Q Consensus 309 nLs~N~L 315 (871)
++.-|+.
T Consensus 506 ~i~~~~~ 512 (1081)
T KOG0618|consen 506 DITLNNT 512 (1081)
T ss_pred ecccCCC
Confidence 7776633
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=2.4e-07 Score=112.05 Aligned_cols=104 Identities=23% Similarity=0.349 Sum_probs=81.4
Q ss_pred CCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccccccc
Q 002880 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (871)
Q Consensus 182 ~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~ 261 (871)
.++.|+|++|.|+ +.+|..+++|++|+.|+|++|.+.+..+ .. +
T Consensus 419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~l~g~iP----~~----~-------------------------- 462 (623)
T PLN03150 419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNSIRGNIP----PS----L-------------------------- 462 (623)
T ss_pred EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCcccCcCC----hH----H--------------------------
Confidence 4789999999997 3467889999999999999999865431 11 1
Q ss_pred CCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCC-CCcceeEee
Q 002880 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGF-PCLQSLGVD 339 (871)
Q Consensus 262 ~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~l-p~L~~L~L~ 339 (871)
..+++|+.|||++|.+++.+|..++ .|++|+.|+|++|+|.+ .+|..++++ .++..+++.
T Consensus 463 ------------~~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~N~l~g----~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 463 ------------GSITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNGNSLSG----RVPAALGGRLLHRASFNFT 523 (623)
T ss_pred ------------hCCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcCCcccc----cCChHHhhccccCceEEec
Confidence 1267899999999999999898888 89999999999999987 555555543 456666665
No 36
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.37 E-value=1.1e-06 Score=113.56 Aligned_cols=56 Identities=25% Similarity=0.258 Sum_probs=41.0
Q ss_pred cCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeC
Q 002880 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340 (871)
Q Consensus 275 ~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~i 340 (871)
.+++|+.|+|++|.....+|. ..++|+.|+|++|.|.. +|..+.++++|+.|+|+-
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CccccCEEECCCCCccccccc-----cccccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCC
Confidence 477888888888765544333 34678888998888875 345678889999998873
No 37
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.35 E-value=1.8e-05 Score=87.26 Aligned_cols=173 Identities=25% Similarity=0.295 Sum_probs=94.3
Q ss_pred cccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc--
Q 002880 603 VMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-- 678 (871)
Q Consensus 603 t~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-- 678 (871)
..|..+.+.++++ |- -.|+|+.+.+ ++.++... .+-.+|+||..++.|+|+.++.+.+++.+..+
T Consensus 97 ~dK~~~k~~l~~~-gI--p~p~~~~~~~~~~~~~~~~~--------~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~ 165 (304)
T PRK01372 97 MDKLRTKLVWQAA-GL--PTPPWIVLTREEDLLAAIDK--------LGLPLVVKPAREGSSVGVSKVKEEDELQAALELA 165 (304)
T ss_pred hCHHHHHHHHHHC-CC--CCCCEEEEeCcchHHHHHhh--------cCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHH
Confidence 4555555555443 32 2677776643 22222221 23468999999999999999999888765432
Q ss_pred ---cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCCC
Q 002880 679 ---TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNH 755 (871)
Q Consensus 679 ---~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~ 755 (871)
..+++||+||+ |+ ++++.|+-...-|. +++.... . ..++. .+|..+...
T Consensus 166 ~~~~~~~lvEe~i~------G~--E~~v~vi~~~~~~~---------~~~~~~~----~--~~~~~-----~~~~~g~~~ 217 (304)
T PRK01372 166 FKYDDEVLVEKYIK------GR--ELTVAVLGGKALPV---------IEIVPAG----E--FYDYE-----AKYLAGGTQ 217 (304)
T ss_pred HhcCCcEEEEcccC------CE--EEEEEEECCCccce---------EEEEecC----C--EEeee-----ccccCCCeE
Confidence 35789999997 54 66776543211111 1111100 0 00000 011000000
Q ss_pred CCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCccc
Q 002880 756 MNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRAC 834 (871)
Q Consensus 756 ~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~ 834 (871)
. +.. . .. -+++.++|.+++..++.+. ++....++||++|.+++|++||||..|.+...+
T Consensus 218 ~----~~p---~--~~-~~~~~~~l~~~a~~~~~~l----------g~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~ 276 (304)
T PRK01372 218 Y----ICP---A--GL-PAEIEAELQELALKAYRAL----------GCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHS 276 (304)
T ss_pred E----EeC---C--CC-CHHHHHHHHHHHHHHHHHh----------CCcceEEEEEEEcCCCCEEEEEecCCCCCCccc
Confidence 0 000 0 00 0123344555544444432 123457999999999999999999999997654
No 38
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.34 E-value=3e-06 Score=93.48 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=93.6
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|......++++ |- -.|+|....+ ++.+++..+ .+-.+|+||..++.|+|+.++++.++.....+
T Consensus 97 ~~dK~~~~~~l~~~-gi--p~P~t~~~~~~~~~~~~~~~~-------~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~ 166 (300)
T PRK10446 97 ARDKLRSMQLLARQ-GI--DLPVTGIAHSPDDTSDLIDMV-------GGAPLVVKLVEGTQGIGVVLAETRQAAESVIDA 166 (300)
T ss_pred hhcHHHHHHHHHHc-CC--CCCCEEEeCCHHHHHHHHHHh-------CCCCEEEEECCCCCcccEEEEcCHHHHHHHHHH
Confidence 44555555656544 32 3577765532 233333222 12469999999999999999988765544332
Q ss_pred ----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecC-CCCCCCCCccccccceeeeccccCC
Q 002880 679 ----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANN-PYSLDKHSFFEYETHFTVMNYGRRF 753 (871)
Q Consensus 679 ----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~-~y~~~~~~l~~~~~HlTn~ny~~~~ 753 (871)
..+++||+||+.+ .-.|+|+.|+=. ++. ..+-|.+.. .|. + ||..+.
T Consensus 167 ~~~~~~~~lvQe~I~~~-----~g~d~rv~vig~-----~~~---~~~~r~~~~~~~~-------------~--n~~~g~ 218 (300)
T PRK10446 167 FRGLNAHILVQEYIKEA-----QGCDIRCLVVGD-----EVV---AAIERRAKEGDFR-------------S--NLHRGG 218 (300)
T ss_pred HHhcCCCEEEEeeeccC-----CCceEEEEEECC-----EEE---EEEEEecCCCchh-------------h--eeccCC
Confidence 3579999999732 246999987621 111 112333321 111 1 222111
Q ss_pred CCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCc
Q 002880 754 NHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTR 832 (871)
Q Consensus 754 ~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~ 832 (871)
.... . .+.+.+.++..+++.++ +|. ..|+||++|+++ ||++|||..|++..
T Consensus 219 ~~~~-------------~---~l~~~~~~~a~~a~~al----------g~~-~~gvD~~~~~~g-~~vlEvN~~pg~~~ 269 (300)
T PRK10446 219 AASV-------------A---SITPQEREIAIKAARTM----------ALD-VAGVDILRANRG-PLVMEVNASPGLEG 269 (300)
T ss_pred eecc-------------C---CCCHHHHHHHHHHHHHh----------CCC-EEEEEEEEcCCC-cEEEEEECCCChhh
Confidence 0000 0 11223444444333332 133 789999999887 99999999999864
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.34 E-value=5.6e-07 Score=110.14 Aligned_cols=186 Identities=19% Similarity=0.244 Sum_probs=99.1
Q ss_pred HHHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeecccccccccc
Q 002880 92 SQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDML 171 (871)
Q Consensus 92 ~ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~l 171 (871)
+.|..+|.-.. .+|..++++.| .+++++.. + ...++.|+|++|+|...
T Consensus 209 N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~----------------l-----------~~~L~~L~Ls~N~L~~L-- 256 (754)
T PRK15370 209 NELKSLPENLQ--GNIKTLYANSN-QLTSIPAT----------------L-----------PDTIQEMELSINRITEL-- 256 (754)
T ss_pred CCCCcCChhhc--cCCCEEECCCC-ccccCChh----------------h-----------hccccEEECcCCccCcC--
Confidence 45666665332 46777777766 34433330 0 12478888888888752
Q ss_pred ccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccc
Q 002880 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE 251 (871)
Q Consensus 172 ~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~ 251 (871)
+..+ .++|+.|+|++|+|+.+ |..+. ++|+.|+|++|.|++.. ..+...+..|.+.++.++... .
T Consensus 257 -P~~l---~s~L~~L~Ls~N~L~~L---P~~l~--~sL~~L~Ls~N~Lt~LP-----~~lp~sL~~L~Ls~N~Lt~LP-~ 321 (754)
T PRK15370 257 -PERL---PSALQSLDLFHNKISCL---PENLP--EELRYLSVYDNSIRTLP-----AHLPSGITHLNVQSNSLTALP-E 321 (754)
T ss_pred -ChhH---hCCCCEEECcCCccCcc---ccccC--CCCcEEECCCCccccCc-----ccchhhHHHHHhcCCccccCC-c
Confidence 1112 25788888888888854 33332 57888888888886543 111122222222223332211 0
Q ss_pred ccccccccccCCCCCCCcccc--CCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcC
Q 002880 252 WALGFCGEVYDKDNPSSLCLR--DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG 329 (871)
Q Consensus 252 ~~l~~~~~~~~~~~~~~i~~~--~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~ 329 (871)
....++..+.+.++-... ...+++|+.|+|++|+|+.+ |..+ .++|+.|+|++|+|.+++.. ++
T Consensus 322 ---~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~L-P~~l----p~~L~~LdLs~N~Lt~LP~~-l~----- 387 (754)
T PRK15370 322 ---TLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVL-PETL----PPTITTLDVSRNALTNLPEN-LP----- 387 (754)
T ss_pred ---cccccceeccccCCccccCChhhcCcccEEECCCCCCCcC-Chhh----cCCcCEEECCCCcCCCCCHh-HH-----
Confidence 011122222222211110 01135788888888888765 4322 35788888888888876532 21
Q ss_pred CCCcceeEee
Q 002880 330 FPCLQSLGVD 339 (871)
Q Consensus 330 lp~L~~L~L~ 339 (871)
++|+.|+++
T Consensus 388 -~sL~~LdLs 396 (754)
T PRK15370 388 -AALQIMQAS 396 (754)
T ss_pred -HHHHHHhhc
Confidence 246666666
No 40
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.31 E-value=1.1e-06 Score=113.57 Aligned_cols=164 Identities=18% Similarity=0.136 Sum_probs=89.0
Q ss_pred CceeEEeecccc-ccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 154 GTVKWLELEDAD-IGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 154 ~~l~~L~L~~~~-i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
..+++|+|+++. +.... -...+++|+.|+|++|.. +..+|..+++|++|+.|+|++|...+..+..+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~--L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i----- 701 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSS--LVELPSSIQYLNKLEDLDMSRCENLEILPTGI----- 701 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCC--ccccchhhhccCCCCEEeCCCCCCcCccCCcC-----
Confidence 457888888763 43321 134578888888888753 23467778888888888888865433322111
Q ss_pred hcCCCcccccccccccccccc--------ccccccccCCCCCCCcc-------------------------c-cCCcCCc
Q 002880 233 QGCPKLEIYNSNFTINFGEWA--------LGFCGEVYDKDNPSSLC-------------------------L-RDRPLQS 278 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~--------l~~~~~~~~~~~~~~i~-------------------------~-~~~~l~~ 278 (871)
.+++|+.++++.+...+... +... .+....+|..+. . ....+++
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~-~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD-ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccccCCcCeeecC-CCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 35556666554432211100 0000 000001111000 0 0011346
Q ss_pred cceeecCCccccccccccCCCCCCCCcceEeccCCC-CCCcchHHHHHHhcCCCCcceeEee
Q 002880 279 VTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP-LEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 279 L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~-L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+.|+|++|...+.+|..+. .+++|+.|+|++|. +..+| ..+ ++++|++|+++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~--~L~~L~~L~Ls~C~~L~~LP-----~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQ--NLHKLEHLEIENCINLETLP-----TGI-NLESLESLDLS 833 (1153)
T ss_pred chheeCCCCCCccccChhhh--CCCCCCEEECCCCCCcCeeC-----CCC-CccccCEEECC
Confidence 77777777776666676666 67778888887763 44332 222 56777777776
No 41
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.28 E-value=7e-06 Score=90.64 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=25.6
Q ss_pred EEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 805 AMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 805 el~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
...|+||++|.++.||+||||+.|++.
T Consensus 247 ~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 247 GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 789999999988999999999999997
No 42
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.28 E-value=8.5e-06 Score=91.33 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=86.4
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
+-.||+||..++.|.|+.++++.+++.+.++ ....+||+||+ |+ ++++-|+.. ++ .+ .--+-
T Consensus 162 ~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~------G~--E~~v~vl~~--~~-~~--~~~~e 228 (333)
T PRK01966 162 GLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK------GR--EIECAVLGN--DP-KA--SVPGE 228 (333)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC------CE--EEEEEEECC--CC-eE--cccEE
Confidence 4579999999999999999999888766543 46799999997 54 566666643 11 11 11111
Q ss_pred EEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 723 VRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 723 vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
+.....-|+ +.. .|..+.... ..+. .-+++.++|+++..+++.+.
T Consensus 229 i~~~~~~~d--------~~~-----ky~~~~~~~-----------~~Pa~l~~~~~~~i~~~a~~~~~aL---------- 274 (333)
T PRK01966 229 IVKPDDFYD--------YEA-----KYLDGSAEL-----------IIPADLSEELTEKIRELAIKAFKAL---------- 274 (333)
T ss_pred EecCCceEc--------HHH-----ccCCCCceE-----------EeCCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 221111111 111 111000000 0000 01245566777766666653
Q ss_pred CcEEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 802 ~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+|....++||++|.+++||+||||..|++...+-+
T Consensus 275 g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 275 GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISMY 309 (333)
T ss_pred CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 24567899999999999999999999999876543
No 43
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.27 E-value=1.2e-05 Score=88.56 Aligned_cols=143 Identities=21% Similarity=0.302 Sum_probs=83.6
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
+-.||+||..++.|.|+.++++.+++.+..+ .+..+||+||+ |+ ++++-|+...-.+ .+ +--..
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~------G~--E~sv~vl~~~~~~-~v--l~~~e 193 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP------GR--EMTVSILETEKGF-EV--LPILE 193 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc------ce--EEEEEEEcCCCCe-ee--eceEE
Confidence 4679999999999999999999888765432 35789999996 54 7777777543111 11 11000
Q ss_pred EEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 723 VRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKW-LEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 723 vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w-~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
.+... . +.++. .+|... . ..+. .+... +++.++|++++.+++.+.
T Consensus 194 ~~~~~-~-------~~~~~-----~k~~~g---~--~~~~------~p~~l~~~~~~~i~~~a~~~~~~l---------- 239 (299)
T PRK14571 194 LRPKR-R-------FYDYV-----AKYTKG---E--TEFI------LPAPLNPEEERLVKETALKAFVEA---------- 239 (299)
T ss_pred EecCC-C-------ccccc-----cccCCC---C--eeEE------eCCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 11000 0 00000 011100 0 0000 01001 234555666666555543
Q ss_pred CcEEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 802 ~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+|....++||+++ +++||+||||..|++...+.+
T Consensus 240 g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 240 GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDL 273 (299)
T ss_pred CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHH
Confidence 2456889999998 579999999999999876544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=7.2e-07 Score=74.34 Aligned_cols=38 Identities=37% Similarity=0.620 Sum_probs=32.4
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
+++|+.|+|++|.|+.+.+..|. .+++|++|+|++|+|
T Consensus 24 l~~L~~L~l~~N~l~~i~~~~f~--~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 24 LPNLETLDLSNNNLTSIPPDAFS--NLPNLRYLDLSNNNL 61 (61)
T ss_dssp GTTESEEEETSSSESEEETTTTT--TSTTESEEEETSSSB
T ss_pred CCCCCEeEccCCccCccCHHHHc--CCCCCCEEeCcCCcC
Confidence 67788889999999888778887 788999999998875
No 45
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=6.4e-06 Score=91.46 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=108.7
Q ss_pred CCcEEccccCCCcccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEE
Q 002880 589 DQQYVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSV 666 (871)
Q Consensus 589 ~~q~vN~fP~~~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v 666 (871)
....+|.--....-..|-.....+.+. | --+|+|....+ +..+|+++. .+...|+||..|+.|+|++.
T Consensus 104 G~~viN~p~~i~~~~nK~~~~~~l~~~-~--ipvP~T~i~~~~~~~~~~~~~~-------~g~pvVlKp~~Gs~G~gV~~ 173 (318)
T COG0189 104 GVPVINDPQSIRRCRNKLYTTQLLAKA-G--IPVPPTLITRDPDEAAEFVAEH-------LGFPVVLKPLDGSGGRGVFL 173 (318)
T ss_pred CCeEECCHHHHHhhhhHHHHHHHHHhc-C--CCCCCEEEEcCHHHHHHHHHHh-------cCCCEEEeeCCCCCccceEE
Confidence 345667554444455555555555544 1 25799988865 445555432 44678999999999999999
Q ss_pred ecChH-HHHHHhc----c--CCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCC-CCCCCCCcc
Q 002880 667 TDDLS-AVIRLME----T--GPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNP-YSLDKHSFF 738 (871)
Q Consensus 667 ~~~l~-~i~~~~~----~--~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~-y~~~~~~l~ 738 (871)
+++.+ ++..+.+ . ..++||+||..|- =|.|.+|++-. .|...| .+-|.+... |.
T Consensus 174 v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~------~~~rrivv~~~-~~~~~y----~~~R~~~~~~~R------- 235 (318)
T COG0189 174 VEDADPELLSLLETLTQEGRKLIIVQEYIPKAK------RDDRRVLVGGG-EVVAIY----ALARIPASGDFR------- 235 (318)
T ss_pred ecCCChhHHHHHHHHhccccceEehhhhcCccc------CCcEEEEEeCC-EEeEEe----eeccccCCCCce-------
Confidence 99888 6665543 2 3599999999752 36666666542 133333 566654322 11
Q ss_pred ccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCc
Q 002880 739 EYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQ 818 (871)
Q Consensus 739 ~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~k 818 (871)
| |++.+..-.. .++-+.++++..++-.+. ...++|+||+.+ +..
T Consensus 236 ------~--N~a~Gg~~e~----------------~~l~~e~~elA~kaa~~l-----------Gl~~~GVDiie~-~~g 279 (318)
T COG0189 236 ------S--NLARGGRAEP----------------CELTEEEEELAVKAAPAL-----------GLGLVGVDIIED-KDG 279 (318)
T ss_pred ------e--eccccccccc----------------cCCCHHHHHHHHHHHHHh-----------CCeEEEEEEEec-CCC
Confidence 2 2222111000 011122233322221111 267899999999 778
Q ss_pred eEEEEecCCCCCCcc
Q 002880 819 PKLLEVTYCPDCTRA 833 (871)
Q Consensus 819 pwLLEVN~~P~l~~~ 833 (871)
.+++|||.+|.+...
T Consensus 280 ~~V~EVN~sP~~~~~ 294 (318)
T COG0189 280 LYVTEVNVSPTGKGE 294 (318)
T ss_pred cEEEEEeCCCccccc
Confidence 999999999988763
No 46
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.21 E-value=1.5e-05 Score=89.67 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=84.2
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
.-.||+||..++.+.|+.++++.+++....+ ....+||+||+ |+-+ .+-|+... +.+.+ ...+-
T Consensus 165 ~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~E~--sv~vl~~~-~~~~~--~~~~~ 233 (343)
T PRK14568 165 TYPVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVLIEEAVV------GSEV--GCAVLGNG-ADLVV--GEVDQ 233 (343)
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC------CEEE--EEEEEcCC-CCcce--ecceE
Confidence 3579999999999999999999888765443 35689999997 5544 33333211 00111 11111
Q ss_pred EEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 723 VRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVK-WLEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 723 vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~-w~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
++....-|. +....+..+.. ..... ..+.. -+++.++|++++.+++.+.
T Consensus 234 i~~~~~~~~--------~~~k~~~~~g~-----~~~~~-------~~Pa~l~~~~~~~i~~~a~~~~~~L---------- 283 (343)
T PRK14568 234 IRLSHGFFR--------IHQENEPEKGS-----ENSTI-------IVPADISAEERSRVQETAKAIYRAL---------- 283 (343)
T ss_pred EecCCCccc--------hhhhhccccCC-----CCeeE-------EeCCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 111111111 11000000000 00000 00100 1245566777776666654
Q ss_pred CcEEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 802 ~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+|....++||++|.++++|++|||+.|++...+.+
T Consensus 284 g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 284 GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCHH
Confidence 25678999999999999999999999999876544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.9e-07 Score=99.49 Aligned_cols=185 Identities=22% Similarity=0.250 Sum_probs=121.8
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCc-ccccccccchhHHhhc
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP-VLKKCDHCMEDAILQG 234 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~-l~~~~~~~~~~~i~~~ 234 (871)
++.||||.-.|+-..+.. +...|.+|+.|+|.||+|. +.|...+.+=.+|+.||||... ++. .-.+.+..+
T Consensus 187 lq~lDLS~s~it~stl~~--iLs~C~kLk~lSlEg~~Ld--D~I~~~iAkN~~L~~lnlsm~sG~t~----n~~~ll~~s 258 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHG--ILSQCSKLKNLSLEGLRLD--DPIVNTIAKNSNLVRLNLSMCSGFTE----NALQLLLSS 258 (419)
T ss_pred hHHhhcchhheeHHHHHH--HHHHHHhhhhccccccccC--cHHHHHHhccccceeeccccccccch----hHHHHHHHh
Confidence 678888888887655444 5678999999999999998 4688899999999999999863 222 235677789
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccc-cCCCCCCCCcceEeccCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK-AFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~-~~~~~~l~~L~~LnLs~N 313 (871)
|..|..||++.|+...+......+ ..-++|+.|||||+.-.=-+.. +.-...+|+|..||||+|
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~---------------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVA---------------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHh---------------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 999999999988776442111111 1134688888888653211110 000126888999999887
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCCcccccCccc
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTA 366 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~Ln~~~v 366 (871)
.--. . +....+-+|+.|++|+++-+..+.-...-.+.+.|.|..||-...
T Consensus 324 v~l~--~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 324 VMLK--N-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccC--c-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 6543 1 566777888999999888222111111223346666766665443
No 48
>PRK05246 glutathione synthetase; Provisional
Probab=98.17 E-value=1.9e-05 Score=87.83 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=61.8
Q ss_pred CcEEccccCCCcccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEe
Q 002880 590 QQYVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVT 667 (871)
Q Consensus 590 ~q~vN~fP~~~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~ 667 (871)
-..+|..........|-.+.+. ..++|+|....+ ++.+|++.+ +..|+||..|++|+||..+
T Consensus 110 ~~v~N~p~~l~~~~dK~~~~~l-------~~~vP~T~~~~~~~~~~~~~~~~---------~~vVlKP~~G~~G~gV~~i 173 (316)
T PRK05246 110 TLVVNKPQSLRDANEKLFTLWF-------PELMPPTLVTRDKAEIRAFRAEH---------GDIILKPLDGMGGAGIFRV 173 (316)
T ss_pred CeEECCHHHHHhCccHHHHHhh-------hccCCCEEEeCCHHHHHHHHHHC---------CCEEEEECCCCCccceEEE
Confidence 3456665444444555544332 237999987653 344555444 3689999999999999998
Q ss_pred cCh----HHHHHHh---ccCCcccccccccccccCCceeeeeEEEE
Q 002880 668 DDL----SAVIRLM---ETGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 668 ~~l----~~i~~~~---~~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
++. ..+.+.+ ...++++|+||+.+- + -|+|++|+
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~--~---~D~Rv~vv 214 (316)
T PRK05246 174 KADDPNLGSILETLTEHGREPVMAQRYLPEIK--E---GDKRILLV 214 (316)
T ss_pred eCCCccHHHHHHHHHHccCCeEEEEeccccCC--C---CCEEEEEE
Confidence 542 2333333 246899999998532 2 39999877
No 49
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.17 E-value=9.6e-06 Score=84.55 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=82.5
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEee---ecCcEEEEEc
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRS---MDPLEIFLSD 719 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS---~~PL~vy~y~ 719 (871)
+-.+|+||..+.-+.||.++++.+++...++ ..+.+|++||. ||-|-+- |+-.. +-|..-.++.
T Consensus 33 ~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~------G~E~tv~--vl~~~~~~~~~~~ei~~~ 104 (203)
T PF07478_consen 33 GFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS------GREFTVG--VLGNGEPRVLPPVEIVFP 104 (203)
T ss_dssp SSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S------SEEEEEE--EEESSSTEEEEEEEEEES
T ss_pred CCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec------ccceEEE--EEecCCcccCceEEEEcC
Confidence 4678999999999999999999888776553 35789999985 6644443 33311 0011111222
Q ss_pred ceEEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 002880 720 VFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQ-VKWLEIHQRVKNTIRSVFEAAAVAHPEM 798 (871)
Q Consensus 720 ~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~-~~w~~I~~~I~~~i~~~~~a~~~~~~~~ 798 (871)
.++. ++..- |.. ..... ....+ .....+.++|+++.+.++.++
T Consensus 105 ~~~~---------------d~~~K-----y~~-~~~~~--------~~~~pa~l~~~~~~~i~~~a~~a~~~l------- 148 (203)
T PF07478_consen 105 SEFY---------------DYEAK-----YQP-ADSET--------EYIIPADLSEELQEKIKEIAKKAFKAL------- 148 (203)
T ss_dssp SSEE---------------EHHHH-----HSG-CCSCE--------EEESS-SS-HHHHHHHHHHHHHHHHHT-------
T ss_pred CCce---------------ehhhe-----ecc-CCCce--------EEEecCCCCHHHHHHHHHHHHHHHHHH-------
Confidence 2111 11111 100 00000 00001 112456777888887777654
Q ss_pred CCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 799 HSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 799 ~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+|...-.+||.+|++++||+||||+.|++...+.+
T Consensus 149 ---g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 149 ---GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp ---TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHH
T ss_pred ---cCCCceeEEEEeccCCceEEEeccCcccccCCCHH
Confidence 24556789999999999999999999999876655
No 50
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.14 E-value=2.6e-05 Score=86.70 Aligned_cols=148 Identities=13% Similarity=0.107 Sum_probs=97.2
Q ss_pred HHHHHHcCCcEEe--CC------CCCceEEEeccCC---cchHHhhhCCCC-CcEEccccCCCcccccHHHHHHHHHhcC
Q 002880 550 VEEFLTRTEFVIT--TE------PKDADIIWTSLQV---DEDMKTATGITD-QQYVNQFPFESCLVMKHHLAETVQKAHG 617 (871)
Q Consensus 550 V~~~L~~~gf~~~--~~------~~~~di~W~~~~~---~~~~~~~~~l~~-~q~vN~fP~~~~lt~K~~L~~~l~~~~g 617 (871)
+.+.+++.|..++ +. ...+|++-..... ...+..+....| -..||-......+..|..+...+.+..-
T Consensus 41 l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~ 120 (328)
T PLN02941 41 LEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKL 120 (328)
T ss_pred HHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEECCHHHHHHHHHHHHHHHHHHHcCC
Confidence 5667778886553 31 1356776543211 212222222233 4468999888889999999988887631
Q ss_pred ---CC-CcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCC---CCCCcEEEecChHHHHHHhccCCccccccccc
Q 002880 618 ---SP-EWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNM---ARTIDTSVTDDLSAVIRLMETGPKICQKYIEF 690 (871)
Q Consensus 618 ---~~-~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~---srG~GI~v~~~l~~i~~~~~~~~~IvQkYI~~ 690 (871)
.. =-.|+|+...+.-.++ ... ....+.+-..|+||-.+ +.|+++.++.+.+.+..+ ..|+++|+||.+
T Consensus 121 ~~~~~~i~~P~t~v~~~~~~al-~~~--~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l--~~p~~lQEfVnh 195 (328)
T PLN02941 121 SDGYGSVGVPKQLVVYDDESSI-PDA--VALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL--EPPLVLQEFVNH 195 (328)
T ss_pred cccCCCCCCCCEEEEcCHHHHH-HHH--HHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc--CCcEEEEEecCC
Confidence 11 2589999886532222 111 11234556789999999 999999999998887764 358999999987
Q ss_pred ccccCCceeeeeEEEEEe
Q 002880 691 PALFQGRKFDLRYIVLVR 708 (871)
Q Consensus 691 PlLi~grKFDlR~yVLvt 708 (871)
| | .|+|+||+-.
T Consensus 196 ~----g--~d~RVfVvGd 207 (328)
T PLN02941 196 G----G--VLFKVYVVGD 207 (328)
T ss_pred C----C--EEEEEEEECC
Confidence 5 3 5999999954
No 51
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.14 E-value=6e-05 Score=83.45 Aligned_cols=177 Identities=17% Similarity=0.180 Sum_probs=97.7
Q ss_pred cccHHHHHHHHHhcCCCCcccceeccC-C--ChhHH-HhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 603 VMKHHLAETVQKAHGSPEWLQPTYNLE-T--HLPQL-IGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 603 t~K~~L~~~l~~~~g~~~~lP~Tf~L~-~--el~~f-~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
..|..+.+.++++ |-+ .|+|..+. . +..+. .... ....+-.+|+||..++.|.|+.++.+.+++.+..+
T Consensus 104 ~dK~~~~~~l~~~-gip--~p~~~~~~~~~~~~~~~~~~~~----~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~ 176 (315)
T TIGR01205 104 MDKLLTKLLWKAL-GLP--TPDYIVLTQNRASADELECEQV----AEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALD 176 (315)
T ss_pred HCHHHHHHHHHHC-CCC--CCCEEEEecccccchhhhHHHH----HHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHH
Confidence 4666666666543 432 46666554 2 11111 1111 11234579999999999999999999888765432
Q ss_pred -----cCCcccccccccccccCCceeeeeEEEEEee-ecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccC
Q 002880 679 -----TGPKICQKYIEFPALFQGRKFDLRYIVLVRS-MDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRR 752 (871)
Q Consensus 679 -----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS-~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~ 752 (871)
..+++||+||+ |+ ++++.|+... .-|..... ... .++ ..|.. +|...
T Consensus 177 ~~~~~~~~~lvEe~i~------G~--e~~v~vi~~~~~~~~~~~~-~~~-~~~--~~~~~---------------~~~~~ 229 (315)
T TIGR01205 177 EAFEYDEEVLVEQFIK------GR--ELEVSILGNEEALPIIEIV-PEI-EGF--YDYEA---------------KYLDG 229 (315)
T ss_pred HHHhcCCcEEEEcCCC------CE--EEEEEEECCCCccceEEec-CCC-CCe--eCccc---------------ccCCC
Confidence 45789999985 54 7777776421 00110000 000 000 00000 01000
Q ss_pred CCCCCChhhHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 753 FNHMNTPDFVRGFEAEHQVK-WLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 753 ~~~~~~~df~~~~~~~~~~~-w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
..... .+.. -+.+.++|++++.+++.+.. +...+++||++|.+++||+||||..|++.
T Consensus 230 ~~~~~-----------~p~~l~~~~~~~i~~~a~~~~~~lg----------~~G~~~vD~~~~~~g~~~viEvN~~pg~~ 288 (315)
T TIGR01205 230 STEYV-----------IPAPLDEELEEKIKELALKAYKALG----------CRGLARVDFFLDEEGEIYLNEINTIPGMT 288 (315)
T ss_pred CeeEE-----------eCCCCCHHHHHHHHHHHHHHHHHhC----------CCceEEEEEEEeCCCCEEEEEeeCCCCCC
Confidence 00000 0000 02345566666666655431 23568999999999999999999999998
Q ss_pred ccc
Q 002880 832 RAC 834 (871)
Q Consensus 832 ~~~ 834 (871)
..+
T Consensus 289 ~~s 291 (315)
T TIGR01205 289 AIS 291 (315)
T ss_pred Ccc
Confidence 753
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=2.8e-06 Score=102.85 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=85.8
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.+..|+|++|+|... .+. ....+++|+.|+|++|+|+. .+|..++.|++|+.|+|++|.+.+..+ . .
T Consensus 419 ~v~~L~L~~n~L~g~--ip~-~i~~L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N~lsg~iP----~----~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGF--IPN-DISKLRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYNSFNGSIP----E----S 485 (623)
T ss_pred EEEEEECCCCCcccc--CCH-HHhCCCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCCCCCCCCc----h----H
Confidence 478899999988642 222 24578999999999999983 477889999999999999999966442 1 1
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~ 314 (871)
+ ..+++|+.|+|++|.+++.+|..+.. .+.++..+++.+|.
T Consensus 486 l--------------------------------------~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 L--------------------------------------GQLTSLRILNLNGNSLSGRVPAALGG-RLLHRASFNFTDNA 526 (623)
T ss_pred H--------------------------------------hcCCCCCEEECcCCcccccCChHHhh-ccccCceEEecCCc
Confidence 1 12778999999999999999987762 34678899999997
Q ss_pred CC
Q 002880 315 LE 316 (871)
Q Consensus 315 L~ 316 (871)
..
T Consensus 527 ~l 528 (623)
T PLN03150 527 GL 528 (623)
T ss_pred cc
Confidence 53
No 53
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.12 E-value=4.4e-06 Score=102.42 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=95.2
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+... . ...++|+.|+|++|+|+.+ |..+. ++|+.|+|++|+|.... ..++
T Consensus 220 ~nL~~L~Ls~N~LtsLP---~---~l~~~L~~L~Ls~N~L~~L---P~~l~--s~L~~L~Ls~N~L~~LP-----~~l~- 282 (754)
T PRK15370 220 GNIKTLYANSNQLTSIP---A---TLPDTIQEMELSINRITEL---PERLP--SALQSLDLFHNKISCLP-----ENLP- 282 (754)
T ss_pred cCCCEEECCCCccccCC---h---hhhccccEEECcCCccCcC---ChhHh--CCCCEEECcCCccCccc-----cccC-
Confidence 46899999999987522 1 1235899999999999865 33343 58999999999996532 2222
Q ss_pred cCCCccccccc---cccccccccccccccccCCCCCCCcccc--CCcCCccceeecCCccccccccccCCCCCCCCcceE
Q 002880 234 GCPKLEIYNSN---FTINFGEWALGFCGEVYDKDNPSSLCLR--DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHL 308 (871)
Q Consensus 234 ~lp~Le~lnl~---~t~~~~~~~l~~~~~~~~~~~~~~i~~~--~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~L 308 (871)
++|+.|+++ +++.... +..++..+.+.++-... ....++|+.|++++|.++++ |..+ .++|+.|
T Consensus 283 --~sL~~L~Ls~N~Lt~LP~~----lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L 351 (754)
T PRK15370 283 --EELRYLSVYDNSIRTLPAH----LPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSL-PASL----PPELQVL 351 (754)
T ss_pred --CCCcEEECCCCccccCccc----chhhHHHHHhcCCccccCCccccccceeccccCCccccC-Chhh----cCcccEE
Confidence 245555543 3322111 11112222222211110 11246899999999999886 4333 3789999
Q ss_pred eccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 309 nLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|++|+|..++. .+ .++|+.|+|+
T Consensus 352 ~Ls~N~L~~LP~-----~l--p~~L~~LdLs 375 (754)
T PRK15370 352 DVSKNQITVLPE-----TL--PPTITTLDVS 375 (754)
T ss_pred ECCCCCCCcCCh-----hh--cCCcCEEECC
Confidence 999999987553 22 3689999998
No 54
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.12 E-value=3e-05 Score=85.48 Aligned_cols=140 Identities=15% Similarity=0.246 Sum_probs=82.9
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWV 723 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~v 723 (871)
+-.+|+||..++.|.|+.++++.+++.+.++ .++.+||+||+ |+ ++++-|+-.. .+... .+
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~------G~--E~tv~vl~~~--~~~~~-----~i 194 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVT------GK--EITVAIVNDE--VYSSV-----WI 194 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEcccc------cE--EEEEEEECCc--CcceE-----EE
Confidence 3569999999999999999999888765443 24789999995 65 5555554221 11110 11
Q ss_pred EeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCc
Q 002880 724 RLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKS 803 (871)
Q Consensus 724 R~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~ 803 (871)
+....-|+ +.. .|....... .. ...-+.+..+|.++..+++.++ +|
T Consensus 195 ~~~~~~~~--------~~~-----k~~~~~~~~-~P----------~~l~~~~~~~i~~~a~~~~~~L----------g~ 240 (296)
T PRK14569 195 EPQNEFYD--------YES-----KYSGKSIYH-SP----------SGLCEQKELEVRQLAKKAYDLL----------GC 240 (296)
T ss_pred ecCCCcCC--------hhh-----ccCCCcEEE-eC----------CCCCHHHHHHHHHHHHHHHHHh----------CC
Confidence 11111111 000 111000000 00 0000233455666666555543 25
Q ss_pred EEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 804 RAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 804 fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
....++||++|.+++||++|||..|++...+-+
T Consensus 241 ~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 241 SGHARVDFIYDDRGNFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred ceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHH
Confidence 678899999999999999999999999876544
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=2.2e-06 Score=87.22 Aligned_cols=89 Identities=24% Similarity=0.273 Sum_probs=66.0
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee-CC-CCCCchhhHHhh
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD-IP-GPLGESAIEILE 353 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~-iP-~~l~~~~~~Il~ 353 (871)
++.|.+|.|++|+|+.+-|..-. .+|+|+.|.|++|.|..+. ++.. +..||+|++|.+- -| ....++...++.
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~--dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQELG--DLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred ccccceEEecCCcceeeccchhh--hccccceEEecCcchhhhh--hcch-hccCCccceeeecCCchhcccCceeEEEE
Confidence 66788888888888888554333 5788888888888888733 4433 4788888888886 33 223456678899
Q ss_pred hCCCcccccCcccchh
Q 002880 354 SLPTLCTLNGVTASKI 369 (871)
Q Consensus 354 ~L~~L~~Ln~~~vs~~ 369 (871)
.+|+|+.|+...|...
T Consensus 138 klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVTRK 153 (233)
T ss_pred ecCcceEeehhhhhHH
Confidence 9999999999888854
No 56
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.03 E-value=1.2e-05 Score=80.74 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhccCCc
Q 002880 603 VMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPK 682 (871)
Q Consensus 603 t~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~~~~~ 682 (871)
..|-.+++.++++ |.+ +|+++... ........||+||..|+.|.||.++++.++....... ..
T Consensus 2 ~dK~~~~~~L~~~-gi~--~P~~~~~~-------------~~~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~-~~ 64 (161)
T PF02655_consen 2 SDKLKTYKFLKEL-GIP--VPTTLRDS-------------EPEPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK-LR 64 (161)
T ss_dssp TSHHHHHHHHTTT--S----------E-------------ESS--SSSEEEEESS-------B--SS--TTE--------
T ss_pred CCHHHHHHHHHcc-CCC--CCCccccc-------------cccccCCcEEEEeCCCCCCCCeEEECCchhhcccccc-ce
Confidence 4677888888765 322 55333221 1122357899999999999999999987655433222 23
Q ss_pred ccccccc
Q 002880 683 ICQKYIE 689 (871)
Q Consensus 683 IvQkYI~ 689 (871)
++|+||+
T Consensus 65 i~Qe~i~ 71 (161)
T PF02655_consen 65 IVQEFIE 71 (161)
T ss_dssp EEEE---
T ss_pred EEeeeeC
Confidence 9999998
No 57
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.01 E-value=1.5e-06 Score=95.76 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=51.3
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCC-Ccccccccccc
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN-NPVLKKCDHCM 227 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~-N~l~~~~~~~~ 227 (871)
.+...+.|+.|+|+. ++......+++|+.|+||+|+|+.+. |.+|.+|++|-.|-|-+ |+|+....+.|
T Consensus 67 ~~tveirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~--p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIA--PDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcceEEEeccCCccc---CChhhccchhhhceecccccchhhcC--hHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 456778888888875 45556777889999999999988653 57888888887776655 88876654433
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=7.4e-06 Score=89.40 Aligned_cols=169 Identities=21% Similarity=0.179 Sum_probs=104.5
Q ss_pred ceeEEeecccccccccccccc-ccccCCCCcEeeccCCccccHHHHH-----------HHHhcCCCCCeeeCCCCccccc
Q 002880 155 TVKWLELEDADIGDDMLLSLN-LSSKFPDLQALSLCGNKLETVEIIV-----------QEVTKLKNLRALWLNNNPVLKK 222 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~-l~~~~p~L~~L~Ls~N~L~~~~~i~-----------~~l~~L~~Lk~L~Ls~N~l~~~ 222 (871)
.++.|+||+|.|.......+. +...|.+|+.|.|.+|.|...+.-. ...+.=+.|+++.-++|.+-..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 577778888877776666664 5566777888888888776433211 1122334677777777777332
Q ss_pred ccccchhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcccccccc----ccCC
Q 002880 223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN----KAFS 298 (871)
Q Consensus 223 ~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p----~~~~ 298 (871)
. ......++..+|.|+.+-...++..+..... +......+++|+.|||.+|-++.... +.++
T Consensus 173 g-a~~~A~~~~~~~~leevr~~qN~I~~eG~~a-------------l~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 173 G-ATALAEAFQSHPTLEEVRLSQNGIRPEGVTA-------------LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred c-HHHHHHHHHhccccceEEEecccccCchhHH-------------HHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 2 2333444556677776666666544332100 00112336788888888888875433 3444
Q ss_pred CCCCCCcceEeccCCCCCCcchHHHHHH-hcCCCCcceeEee
Q 002880 299 PAEMPSLSHLNIRGNPLEQNSVRELLEV-LKGFPCLQSLGVD 339 (871)
Q Consensus 299 ~~~l~~L~~LnLs~N~L~~l~~~~i~~~-l~~lp~L~~L~L~ 339 (871)
.+++|+.|+++.|.+.+-....+.+. -...|+|+.|.+.
T Consensus 239 --s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 239 --SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred --ccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 67888888888888887665555443 3456888888877
No 59
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.00 E-value=3.9e-06 Score=69.94 Aligned_cols=57 Identities=28% Similarity=0.488 Sum_probs=51.7
Q ss_pred CccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 277 ~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++|+.|+|++|.|+.+.+..|. .+++|++|+|++|.|..++.. .+.++++|++|+++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSSTESEECTTTTT--TGTTESEEEETSSSESEEETT----TTTTSTTESEEEET
T ss_pred CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCc
Confidence 4689999999999999888998 899999999999999987744 68999999999987
No 60
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=97.99 E-value=2.4e-05 Score=79.25 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=45.5
Q ss_pred CCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecC----hHHHHHHhc---cCCcccccccc
Q 002880 619 PEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDD----LSAVIRLME---TGPKICQKYIE 689 (871)
Q Consensus 619 ~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~----l~~i~~~~~---~~~~IvQkYI~ 689 (871)
|+++|+|+.-.+ ++.+|++.+ ..||+||..++.|+|++.++. +..+...+- ..+.++|+||+
T Consensus 9 ~~~~P~T~vs~~~~~i~~f~~~~---------~~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp 79 (173)
T PF02955_consen 9 PELIPPTLVSRDKEEIRAFIEEH---------GDIVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLP 79 (173)
T ss_dssp CCCS--EEEES-HHHHHHHHHHH---------SSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--G
T ss_pred cccCcCEEEECCHHHHHHHHHHC---------CCEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccc
Confidence 689999998753 455565544 339999999999999999875 456555442 34699999998
Q ss_pred cccccCCceeeeeEEEE
Q 002880 690 FPALFQGRKFDLRYIVL 706 (871)
Q Consensus 690 ~PlLi~grKFDlR~yVL 706 (871)
. . -+| |.|+.++
T Consensus 80 ~-i-~~G---DkRii~~ 91 (173)
T PF02955_consen 80 E-I-KEG---DKRIILF 91 (173)
T ss_dssp G-G-GG----EEEEEEE
T ss_pred c-c-cCC---CEEEEEE
Confidence 6 3 356 7898766
No 61
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.98 E-value=0.0001 Score=83.58 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=89.8
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
+-.+|+||.++..|.||.++++.+++.+.++ ....+||+||+ || ++++-|+-. ....+ +..+-
T Consensus 171 g~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~------Gr--Ei~v~Vlg~--~~~~v--~~~~E 238 (364)
T PRK14570 171 GYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE------AR--EIECSVIGN--EQIKI--FTPGE 238 (364)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC------CE--EEEEEEECC--CCceE--eeeEE
Confidence 4578999999888999999999888776443 35689999997 54 677776632 11122 22222
Q ss_pred EEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 723 VRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQ-VKWLEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 723 vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~-~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
+.+.... +.+|... |.....+. ..+ ..+ ..-+++.++|+++...++.+.
T Consensus 239 i~~~~~~-------f~dy~~K-----y~~~~~~~--~~~------~~Pa~l~~e~~~~i~~~A~~~~~aL---------- 288 (364)
T PRK14570 239 IVVQDFI-------FYDYDAK-----YSTIPGNS--IVF------NIPAHLDTKHLLDIKEYAFLTYKNL---------- 288 (364)
T ss_pred EEeCCCC-------ccCHHHh-----cCCCCCCc--eEE------ECCCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 2222111 1111111 10000000 000 001 112456677888887777764
Q ss_pred CcEEEEeeeEEEcC-CCceEEEEecCCCCCCccccc
Q 002880 802 KSRAMYGVDIMLDS-SFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 802 ~~fel~G~D~mlD~-~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+|..+..+||++|. +++||++|||+.|++...+.+
T Consensus 289 g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 289 ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMF 324 (364)
T ss_pred CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHH
Confidence 36788899999996 599999999999999886555
No 62
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.96 E-value=9.9e-05 Score=83.26 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=83.7
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeec-CcEEEEEcce
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMD-PLEIFLSDVF 721 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~-PL~vy~y~~g 721 (871)
+-.+|+||..++.+.||.++++.+++.+.++ ..+++||+||+ |+ ++++-|+....+ -......-..
T Consensus 171 ~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~------G~--E~sv~vi~~~~~g~~~~~~l~~~ 242 (347)
T PRK14572 171 GFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS------GT--EVSCGVLERYRGGKRNPIALPAT 242 (347)
T ss_pred CCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc------cE--EEEEEEEeCccCCCCCceecccE
Confidence 4579999999999999999999888766443 35789999996 54 556655542110 0000111111
Q ss_pred EEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 002880 722 WVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKW-LEIHQRVKNTIRSVFEAAAVAHPEMHS 800 (871)
Q Consensus 722 ~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w-~~I~~~I~~~i~~~~~a~~~~~~~~~~ 800 (871)
-++.... +.++.. +|..+. .. . ..+..+ +++.++|.+++.+++.+.
T Consensus 243 ei~~~~~--------~~d~~~-----ky~~~~-~~---~-------~~Pa~l~~~~~~~i~~~a~~~~~~L--------- 289 (347)
T PRK14572 243 EIVPGGE--------FFDFES-----KYKQGG-SE---E-------ITPARISDQEMKRVQELAIRAHESL--------- 289 (347)
T ss_pred EEecCCC--------ccCHHH-----ccCCCC-eE---E-------EECCCCCHHHHHHHHHHHHHHHHHh---------
Confidence 1111111 111110 111000 00 0 001111 245566677666665543
Q ss_pred CCcEEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 801 SKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 801 ~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+|....++||+++ +++||++|||+.|++...+-+
T Consensus 290 -g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~ 323 (347)
T PRK14572 290 -GCKGYSRTDFIIV-DGEPHILETNTLPGMTETSLI 323 (347)
T ss_pred -CCcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHH
Confidence 2567889999997 589999999999999876554
No 63
>PRK12458 glutathione synthetase; Provisional
Probab=97.93 E-value=0.00019 Score=80.60 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=63.9
Q ss_pred cEEccccCCCcccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEec
Q 002880 591 QYVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTD 668 (871)
Q Consensus 591 q~vN~fP~~~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~ 668 (871)
..+|.-........|..+....+ ..+|+|+...+ ++.+|++.+ .....|+||..|+.|+|+.+++
T Consensus 116 ~viN~p~~i~~~~dK~~~~~l~~------~~vP~T~v~~~~~~~~~~~~~~-------~~~pvVvKPl~G~gG~gV~~v~ 182 (338)
T PRK12458 116 LVVNDPDGLRIANNKLYFQSFPE------EVRPTTHISRNKEYIREFLEES-------PGDKMILKPLQGSGGQGVFLIE 182 (338)
T ss_pred eEecCHHHHHhccCHHHHHhhcc------CCCCCEEEeCCHHHHHHHHHHc-------CCCeEEEEECCCCCccCeEEEe
Confidence 45777666666667765533221 36899986643 344454432 1124899999999999999987
Q ss_pred ChH-----HHHHHh-ccCCcccccccccccccCCceeeeeEEEE
Q 002880 669 DLS-----AVIRLM-ETGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 669 ~l~-----~i~~~~-~~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
+.+ .+.+.. ..+++++|+||..+ ...|+|++|+
T Consensus 183 ~~~~~~~~~ile~~~~~~~~ivQeyI~~~-----~~gDiRv~vv 221 (338)
T PRK12458 183 KSAQSNLNQILEFYSGDGYVIAQEYLPGA-----EEGDVRILLL 221 (338)
T ss_pred cCChhhHHHHHHHHhhCCCEEEEEcccCC-----CCCCEEEEEE
Confidence 433 344332 35689999999853 2369999975
No 64
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=97.89 E-value=0.00037 Score=78.68 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=55.5
Q ss_pred cccCCC---cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCC-CCCcEEEec
Q 002880 595 QFPFES---CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMA-RTIDTSVTD 668 (871)
Q Consensus 595 ~fP~~~---~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~s-rG~GI~v~~ 668 (871)
-+|+.. ....|..+.+.++++ |-+ .|+++.+.+ ++.++.+. .+-.+|+||..++ .|+|+.+++
T Consensus 86 ~~p~~~~~~~~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~--------~g~P~vvKp~~~g~~g~Gv~~v~ 154 (352)
T TIGR01161 86 LFPSPDALAIIQDRLTQKQFLQKL-GLP--VPPFLVIKDEEELDAALQE--------LGFPVVLKARTGGYDGRGQYRIR 154 (352)
T ss_pred ECCCHHHHHHhcCHHHHHHHHHHc-CCC--CCCccEeCCHHHHHHHHHH--------cCCCEEEEeCCCCCCCCCEEEEC
Confidence 456654 346777777777654 432 455555543 23333222 2357999999875 899999999
Q ss_pred ChHHHHHHhc---cCCcccccccc
Q 002880 669 DLSAVIRLME---TGPKICQKYIE 689 (871)
Q Consensus 669 ~l~~i~~~~~---~~~~IvQkYI~ 689 (871)
+.+++.+..+ ..++|||+||+
T Consensus 155 ~~~el~~a~~~~~~~~~lvEe~I~ 178 (352)
T TIGR01161 155 NEADLPQAAKELGDRECIVEEFVP 178 (352)
T ss_pred CHHHHHHHHHhcCCCcEEEEecCC
Confidence 9888766543 34799999997
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=8.8e-06 Score=88.83 Aligned_cols=184 Identities=18% Similarity=0.180 Sum_probs=97.2
Q ss_pred CCceeEEeecccccccccccc-ccccccCCCCcEeeccCCcccc-HHHH-------HHHHhcCCCCCeeeCCCCcccccc
Q 002880 153 DGTVKWLELEDADIGDDMLLS-LNLSSKFPDLQALSLCGNKLET-VEII-------VQEVTKLKNLRALWLNNNPVLKKC 223 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~-~~l~~~~p~L~~L~Ls~N~L~~-~~~i-------~~~l~~L~~Lk~L~Ls~N~l~~~~ 223 (871)
+++++.++||+|.|....... ..+..+-++|+..++|+--..- ..++ .++|.++++|+.||||+|-|....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 367888999999888733222 2344555677777776543321 1122 345667778888888888886544
Q ss_pred cccchhHHhhcCCCcccccccccccccccc------cccc-----------------ccccCCCCC-CCccccCCcCCcc
Q 002880 224 DHCMEDAILQGCPKLEIYNSNFTINFGEWA------LGFC-----------------GEVYDKDNP-SSLCLRDRPLQSV 279 (871)
Q Consensus 224 ~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~------l~~~-----------------~~~~~~~~~-~~i~~~~~~l~~L 279 (871)
..+|...+ ++|..|+.|-++-||.-+..+ +.-| +++...+-+ ..+.......+.|
T Consensus 109 ~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 43444444 457777777766665432211 1111 111111110 0000011223455
Q ss_pred ceeecCCcccccccc----ccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 280 TSLDLSNRCIHNLVN----KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 280 ~~LdLS~N~I~~l~p----~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+.+.++.|.|..-.- ..|- .+++|+.|||+.|-++......+...+..+|+|+.|+++
T Consensus 188 eevr~~qN~I~~eG~~al~eal~--~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALE--HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ceEEEecccccCchhHHHHHHHH--hCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 666666666543211 2222 466666666666666554444555556666666666665
No 66
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.82 E-value=7.1e-06 Score=90.63 Aligned_cols=96 Identities=26% Similarity=0.365 Sum_probs=76.8
Q ss_pred ccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccc
Q 002880 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE 251 (871)
Q Consensus 172 ~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~ 251 (871)
-+..+..++|+|+.|+|++|+|+.++. .+|.++..|+.|.|..|+|.....+.|
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~--~aFe~~a~l~eL~L~~N~l~~v~~~~f------------------------ 318 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIED--GAFEGAAELQELYLTRNKLEFVSSGMF------------------------ 318 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhh--hhhcchhhhhhhhcCcchHHHHHHHhh------------------------
Confidence 344567788888888888888887654 788888888888888888844331111
Q ss_pred ccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCC
Q 002880 252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317 (871)
Q Consensus 252 ~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~ 317 (871)
.+++.|+.|+|.+|+|+...|.+|. .+.+|..|+|-+|++..
T Consensus 319 ----------------------~~ls~L~tL~L~~N~it~~~~~aF~--~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 319 ----------------------QGLSGLKTLSLYDNQITTVAPGAFQ--TLFSLSTLNLLSNPFNC 360 (498)
T ss_pred ----------------------hccccceeeeecCCeeEEEeccccc--ccceeeeeehccCcccC
Confidence 2377899999999999999999998 89999999999999875
No 67
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.75 E-value=0.00032 Score=83.70 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEE-ecChHHHHHHhc-
Q 002880 603 VMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSV-TDDLSAVIRLME- 678 (871)
Q Consensus 603 t~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v-~~~l~~i~~~~~- 678 (871)
..|....+.++++ |-| +|+++...+ ++.+|.+. -+ ..|+||..|++|+||.+ +++.+++.+..+
T Consensus 296 ~DK~~tk~lL~~a-GIp--VP~~~~~~~~~~~~~~~~~------~G---~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~ 363 (547)
T TIGR03103 296 DDKRLTRRLVSEA-GLQ--VPEQQLAGNGEAVEAFLAE------HG---AVVVKPVRGEQGKGISVDVRTPDDLEAAIAK 363 (547)
T ss_pred cCHHHHHHHHHHc-CcC--CCCEEEECCHHHHHHHHHH------hC---CEEEEECCCCCCcCeEEecCCHHHHHHHHHH
Confidence 4566555556554 543 788877653 23333322 12 37999999999999997 788777765432
Q ss_pred ----cCCcccccccccccccCCceeeeeEEEE
Q 002880 679 ----TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 679 ----~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
...++||+||+ | .|+|++|+
T Consensus 364 a~~~~~~vlvEe~i~------G--~d~Rv~Vi 387 (547)
T TIGR03103 364 ARQFCDRVLLERYVP------G--EDLRLVVI 387 (547)
T ss_pred HHhcCCcEEEEEecc------C--CeEEEEEE
Confidence 34789999996 3 49999766
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=2.2e-06 Score=100.29 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=44.7
Q ss_pred CceeEEeeccccccc-cccccc----------------c-ccccC----------CCCcEeeccCCccccHHHHHHHHhc
Q 002880 154 GTVKWLELEDADIGD-DMLLSL----------------N-LSSKF----------PDLQALSLCGNKLETVEIIVQEVTK 205 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d-~~l~~~----------------~-l~~~~----------p~L~~L~Ls~N~L~~~~~i~~~l~~ 205 (871)
..++.|+|.+|.|+. .++..+ + +.+.| -.|...+.+.|.|..++ ..|.-
T Consensus 109 ~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD---~SLql 185 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD---ESLQL 185 (1096)
T ss_pred cceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH---HHHHH
Confidence 459999999999887 222221 0 11111 24666678888887655 46778
Q ss_pred CCCCCeeeCCCCccccc
Q 002880 206 LKNLRALWLNNNPVLKK 222 (871)
Q Consensus 206 L~~Lk~L~Ls~N~l~~~ 222 (871)
++.|++||||+|+++..
T Consensus 186 l~ale~LnLshNk~~~v 202 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV 202 (1096)
T ss_pred HHHhhhhccchhhhhhh
Confidence 88999999999998553
No 69
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=97.75 E-value=0.00011 Score=81.71 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=50.0
Q ss_pred CcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecC----hHHHHHHh---ccCCccccccccc
Q 002880 620 EWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDD----LSAVIRLM---ETGPKICQKYIEF 690 (871)
Q Consensus 620 ~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~----l~~i~~~~---~~~~~IvQkYI~~ 690 (871)
..+|+|....+ ++.+|++.+ +..|+||..|+.|+|+..++. ...+.... ...++++|+||+.
T Consensus 132 ~~vP~T~v~~~~~~~~~~~~~~---------g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~ 202 (312)
T TIGR01380 132 KVIPPTLVTRDKAEIRAFLAEH---------GDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPE 202 (312)
T ss_pred CCCCCEEEeCCHHHHHHHHHHc---------CCEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEecccc
Confidence 36899986543 345555433 258999999999999998764 22233322 2458999999985
Q ss_pred ccccCCceeeeeEEEE
Q 002880 691 PALFQGRKFDLRYIVL 706 (871)
Q Consensus 691 PlLi~grKFDlR~yVL 706 (871)
+ . .-|+|++|+
T Consensus 203 ~---~--~~D~Rv~vv 213 (312)
T TIGR01380 203 I---K--EGDKRILLI 213 (312)
T ss_pred c---c--CCCEEEEEE
Confidence 2 1 249999886
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.72 E-value=9.4e-06 Score=93.63 Aligned_cols=121 Identities=30% Similarity=0.353 Sum_probs=80.9
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
++++.|+.+.|.. ..+....+.+|+.|+|.+|+|..+..+ +..|++|++|+||+|.|....+
T Consensus 74 l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~~i~~----------- 135 (414)
T KOG0531|consen 74 LKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIENL---LSSLVNLQVLDLSFNKITKLEG----------- 135 (414)
T ss_pred HHhhccchhhhhh----hhcccccccceeeeeccccchhhcccc---hhhhhcchheeccccccccccc-----------
Confidence 4555566666654 233345678888999999988865432 7788889999999998866541
Q ss_pred CCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
...+..|..|++++|.|+.+. .+. .+++|+.|+|++|.+
T Consensus 136 -------------------------------------l~~l~~L~~L~l~~N~i~~~~--~~~--~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 136 -------------------------------------LSTLTLLKELNLSGNLISDIS--GLE--SLKSLKLLDLSYNRI 174 (414)
T ss_pred -------------------------------------hhhccchhhheeccCcchhcc--CCc--cchhhhcccCCcchh
Confidence 112445777888888887772 222 377888888888887
Q ss_pred CCcchHHHHHHhcCCCCcceeEee
Q 002880 316 EQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 316 ~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..+... . +..+.+|+.|.++
T Consensus 175 ~~ie~~---~-~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 175 VDIEND---E-LSELISLEELDLG 194 (414)
T ss_pred hhhhhh---h-hhhccchHHHhcc
Confidence 753211 1 4667777777777
No 71
>PLN02257 phosphoribosylamine--glycine ligase
Probab=97.63 E-value=0.0014 Score=76.11 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=48.0
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|...-+.|+++ |-|. |+...+.+ ++.++++. .+-..|+||..++.|+|+.++++.+++.+...
T Consensus 100 ~~dK~~~K~~l~~~-GIpt--p~~~~~~~~~e~~~~~~~--------~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~ 168 (434)
T PLN02257 100 EGSKNFMKDLCDKY-KIPT--AKYETFTDPAAAKKYIKE--------QGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDS 168 (434)
T ss_pred HcCHHHHHHHHHHc-CCCC--CCeEEeCCHHHHHHHHHH--------cCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHH
Confidence 34566666666654 4332 33333322 23333322 23468999999999999999999887655331
Q ss_pred ----------cCCcccccccc
Q 002880 679 ----------TGPKICQKYIE 689 (871)
Q Consensus 679 ----------~~~~IvQkYI~ 689 (871)
..+.|||+||+
T Consensus 169 ~~~~~~fg~~~~~vlIEefi~ 189 (434)
T PLN02257 169 MLVKGAFGSAGSEVVVEEFLD 189 (434)
T ss_pred HHhhhhccCCCCeEEEEECCC
Confidence 24689999997
No 72
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.63 E-value=0.0014 Score=74.57 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=35.0
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc---------cCCcccccccc
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME---------TGPKICQKYIE 689 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~---------~~~~IvQkYI~ 689 (871)
+-.+|+||..++.|+|+.++++.+++.+..+ .+++|||+||+
T Consensus 136 g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 136 GYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 3579999999999999999999888766432 24799999997
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=1.3e-05 Score=77.22 Aligned_cols=101 Identities=26% Similarity=0.304 Sum_probs=61.9
Q ss_pred EeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccccCCC
Q 002880 185 ALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKD 264 (871)
Q Consensus 185 ~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~ 264 (871)
.|+|+.++|-.+...+..+.+...|+..+||+|.+.... +.+.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp-----~kft-------------------------------- 73 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP-----KKFT-------------------------------- 73 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC-----HHHh--------------------------------
Confidence 445555555555556666777777788888888773322 1111
Q ss_pred CCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 265 NPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 265 ~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
...+.++.|||++|.|+.+ |..+. .+|.|+.||++.|+|..++ ..+..|.+|-.|+..
T Consensus 74 ---------~kf~t~t~lNl~~neisdv-PeE~A--am~aLr~lNl~~N~l~~~p-----~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 74 ---------IKFPTATTLNLANNEISDV-PEELA--AMPALRSLNLRFNPLNAEP-----RVIAPLIKLDMLDSP 131 (177)
T ss_pred ---------hccchhhhhhcchhhhhhc-hHHHh--hhHHhhhcccccCccccch-----HHHHHHHhHHHhcCC
Confidence 1134577888888888887 55465 6888888888888887533 333334555555543
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.60 E-value=8.5e-05 Score=84.79 Aligned_cols=63 Identities=27% Similarity=0.336 Sum_probs=47.2
Q ss_pred CceeEEeeccccccccccccccccccC-CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccc
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKF-PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~-p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~ 223 (871)
..+..|++.++.+.+..... ... ++|+.|++++|++..+ +..++.|++|+.|++++|+++...
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~----~~~~~nL~~L~l~~N~i~~l---~~~~~~l~~L~~L~l~~N~l~~l~ 179 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLI----GLLKSNLKELDLSDNKIESL---PSPLRNLPNLKNLDLSFNDLSDLP 179 (394)
T ss_pred cceeEEecCCcccccCcccc----ccchhhcccccccccchhhh---hhhhhccccccccccCCchhhhhh
Confidence 45888888888887733222 333 3899999999998764 356888999999999999996554
No 75
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.56 E-value=8.1e-05 Score=84.95 Aligned_cols=145 Identities=23% Similarity=0.294 Sum_probs=85.7
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+++.+.|.+.. .-...+|+|+.|++++|+++.+ +...+.+++|+.|++++|++....+ .+ ..
T Consensus 141 nL~~L~l~~N~i~~l~----~~~~~l~~L~~L~l~~N~l~~l---~~~~~~~~~L~~L~ls~N~i~~l~~-----~~-~~ 207 (394)
T COG4886 141 NLKELDLSDNKIESLP----SPLRNLPNLKNLDLSFNDLSDL---PKLLSNLSNLNNLDLSGNKISDLPP-----EI-EL 207 (394)
T ss_pred hcccccccccchhhhh----hhhhccccccccccCCchhhhh---hhhhhhhhhhhheeccCCccccCch-----hh-hh
Confidence 5788888888887632 2356789999999999999864 4445589999999999999966541 10 11
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~ 314 (871)
...|+.+.+...... ..+. ....+.++..|.+++|++..+ +..+. .+++|+.|++++|.
T Consensus 208 ~~~L~~l~~~~N~~~--------------~~~~----~~~~~~~l~~l~l~~n~~~~~-~~~~~--~l~~l~~L~~s~n~ 266 (394)
T COG4886 208 LSALEELDLSNNSII--------------ELLS----SLSNLKNLSGLELSNNKLEDL-PESIG--NLSNLETLDLSNNQ 266 (394)
T ss_pred hhhhhhhhhcCCcce--------------ecch----hhhhcccccccccCCceeeec-cchhc--cccccceecccccc
Confidence 222444444433100 0011 112244555555666665553 22233 45556666666666
Q ss_pred CCCcchHHHHHHhcCCCCcceeEee
Q 002880 315 LEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 315 L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++.++ .++.+.+|+.|+++
T Consensus 267 i~~i~------~~~~~~~l~~L~~s 285 (394)
T COG4886 267 ISSIS------SLGSLTNLRELDLS 285 (394)
T ss_pred ccccc------cccccCccCEEecc
Confidence 65432 14555666666665
No 76
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.56 E-value=0.0018 Score=73.82 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=54.4
Q ss_pred ccccCCCc---ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCC-CCCCcEEEe
Q 002880 594 NQFPFESC---LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNM-ARTIDTSVT 667 (871)
Q Consensus 594 N~fP~~~~---lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~-srG~GI~v~ 667 (871)
.-+|+... ...|..+-+.++++ |-| .|+++.+.+ ++.++.+. -+-.+|+||..+ +.|+|+.++
T Consensus 87 ~~~p~~~~~~~~~dK~~~k~~l~~~-Gip--~p~~~~v~s~~~l~~~~~~--------~g~P~vlKp~~~g~~g~Gv~~v 155 (372)
T PRK06019 87 PVPPGPDALAIAQDRLTEKQFLDKL-GIP--VAPFAVVDSAEDLEAALAD--------LGLPAVLKTRRGGYDGKGQWVI 155 (372)
T ss_pred eeCcCHHHHHHhcCHHHHHHHHHHC-CCC--CCCceEeCCHHHHHHHHHH--------cCCcEEEEeCCCCcCCCCeEEE
Confidence 34566543 45666666666654 422 344444432 23333222 246799999985 689999999
Q ss_pred cChHHHHHHhc---cCCcccccccc
Q 002880 668 DDLSAVIRLME---TGPKICQKYIE 689 (871)
Q Consensus 668 ~~l~~i~~~~~---~~~~IvQkYI~ 689 (871)
++.+++.+..+ .+++|||+||.
T Consensus 156 ~~~~el~~a~~~~~~~~~ivEe~I~ 180 (372)
T PRK06019 156 RSAEDLEAAWALLGSVPCILEEFVP 180 (372)
T ss_pred CCHHHHHHHHHhcCCCCEEEEecCC
Confidence 99888776543 35899999997
No 77
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=97.55 E-value=0.00077 Score=74.02 Aligned_cols=212 Identities=20% Similarity=0.216 Sum_probs=110.0
Q ss_pred ccccCCCcccccHHHHHHHHHhc-CCCC---cccceecc-C--CChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEE
Q 002880 594 NQFPFESCLVMKHHLAETVQKAH-GSPE---WLQPTYNL-E--THLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSV 666 (871)
Q Consensus 594 N~fP~~~~lt~K~~L~~~l~~~~-g~~~---~lP~Tf~L-~--~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v 666 (871)
|.--....+..|-.+.+.++.+. ..|. -.+..|.. . .+.++|.+ +. +.......++||..|++|+||.+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~-~l---~~~~~~~~viKP~~G~~G~Gi~~ 91 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEE-FL---RKHAPDRFVIKPANGSGGKGILV 91 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHH-HH---HhccCCcEEEEeCCCCCccCEEE
Confidence 54444557888888888877651 1222 12333322 1 12222222 21 12234789999999999999998
Q ss_pred ecChH---------HHHHHhc-cC--CcccccccccccccC----CceeeeeEEEEEeeecCcEEEEEcceEEEeecCCC
Q 002880 667 TDDLS---------AVIRLME-TG--PKICQKYIEFPALFQ----GRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPY 730 (871)
Q Consensus 667 ~~~l~---------~i~~~~~-~~--~~IvQkYI~~PlLi~----grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y 730 (871)
+...+ .+..... .+ .+|+|++|+.=-.+. .-==+||+.+++.. -++++ -..+.|++...-
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~---~~~~~-~~a~lRlg~~~~ 167 (285)
T PF14397_consen 92 IDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD---GEVEV-LMAMLRLGRGGS 167 (285)
T ss_pred EEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC---CeeEE-EEEEEEeCCCCC
Confidence 86443 1222222 22 799999998532222 33458999988764 22221 235678874444
Q ss_pred CCCCCC-------ccccccceeeec-cccC---C-CCCCChhhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhhCCC
Q 002880 731 SLDKHS-------FFEYETHFTVMN-YGRR---F-NHMNTPDFVRGFEAEHQ-VKWLEIHQRVKNTIRSVFEAAAVAHPE 797 (871)
Q Consensus 731 ~~~~~~-------l~~~~~HlTn~n-y~~~---~-~~~~~~df~~~~~~~~~-~~w~~I~~~I~~~i~~~~~a~~~~~~~ 797 (871)
..++-. +| ..+.+.... |... . .|..+.. .+. ... -.|+++.+.+.++ +.. .|
T Consensus 168 ~~DN~~~Ggi~~~ID-~~tGl~~~~~~~~~~~~~~~HPdTg~---~~~-g~~IP~w~~~~~l~~~~-------~~~-~p- 233 (285)
T PF14397_consen 168 GVDNFHQGGIGVGID-LATGLGRFAGYDQDGERYEHHPDTGA---PFS-GFQIPNWDEILELAKEA-------HRK-FP- 233 (285)
T ss_pred cccccCCCCEEEEEe-cCCCccccccccCCCCEeeeCCCCCC---ccC-CccCCCHHHHHHHHHHH-------HHH-CC-
Confidence 433310 01 111111110 0000 0 0110000 000 001 2466654433222 221 22
Q ss_pred CCCCCcEEEEeeeEEEcCCCceEEEEecCC--CCCCcc
Q 002880 798 MHSSKSRAMYGVDIMLDSSFQPKLLEVTYC--PDCTRA 833 (871)
Q Consensus 798 ~~~~~~fel~G~D~mlD~~~kpwLLEVN~~--P~l~~~ 833 (871)
.+...|.||.||+++ |.|||.|.. |.+...
T Consensus 234 -----~~~~iGWDvait~~G-p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 234 -----GLGYIGWDVAITEDG-PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred -----CCCeEEEEEEEcCCC-cEEEEeeCCCCCCcHhh
Confidence 256789999999999 999999999 888743
No 78
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.00068 Score=75.34 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=85.1
Q ss_pred cCCCceEEecCCCCCCCCcEEEecChHHHHH---Hh--ccCCcccccccccccccCCceeeeeEEEE--------Eeeec
Q 002880 645 DGLNNLWILKPWNMARTIDTSVTDDLSAVIR---LM--ETGPKICQKYIEFPALFQGRKFDLRYIVL--------VRSMD 711 (871)
Q Consensus 645 ~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~---~~--~~~~~IvQkYI~~PlLi~grKFDlR~yVL--------vtS~~ 711 (871)
.+.+-..+|||.+..-..|+..++...+... .. .++..++++|+. ||++.+.+.-- +.++-
T Consensus 139 ~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~------~rei~v~vl~~~~~~~~l~~~eI~ 212 (317)
T COG1181 139 EGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT------GREIEVGVLGNDYEEQALPLGEIP 212 (317)
T ss_pred cccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC------cceEEEEecCCcccceecCceEEe
Confidence 4677889999998877888888876554433 22 256678888887 66655554211 00111
Q ss_pred C--cEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 002880 712 P--LEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFE 789 (871)
Q Consensus 712 P--L~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~ 789 (871)
| -++|.|+.-|+-.... .+.+.+ .--++++++|+++...++.
T Consensus 213 ~~~~~fydye~Ky~~~gg~--------------------------~~~~pa----------~lt~~~~~~i~~lA~~a~~ 256 (317)
T COG1181 213 PKGEEFYDYEAKYLSTGGA--------------------------QYDIPA----------GLTDEIHEEIKELALRAYK 256 (317)
T ss_pred cCCCeEEeeeccccCCCCc--------------------------eeeCCC----------CCCHHHHHHHHHHHHHHHH
Confidence 1 1222222111100000 000000 0124577778888776666
Q ss_pred HHHhhCCCCCCCCcEEEEeeeEEEcC-CCceEEEEecCCCCCCccccc
Q 002880 790 AAAVAHPEMHSSKSRAMYGVDIMLDS-SFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 790 a~~~~~~~~~~~~~fel~G~D~mlD~-~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+. .|..+-|+||++|+ .+++||+|||++|.+....-+
T Consensus 257 al----------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~ 294 (317)
T COG1181 257 AL----------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLF 294 (317)
T ss_pred hc----------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccc
Confidence 54 36778899999999 999999999999998776665
No 79
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.51 E-value=0.0026 Score=72.86 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=50.9
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
..+|..+.+.+.+..|-| .|+++.+.+ ++.++... .+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 111 ~~dK~~~k~~l~~~~gip--~p~~~~~~s~~~l~~~~~~--------~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~ 180 (395)
T PRK09288 111 TMNREGIRRLAAEELGLP--TSPYRFADSLEELRAAVEE--------IGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEY 180 (395)
T ss_pred HhCHHHHHHHHHHhCCCC--CCCceEECCHHHHHHHHHh--------cCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHH
Confidence 456666666664444432 344444432 23333322 23578999999999999999999888765432
Q ss_pred --------cCCcccccccc
Q 002880 679 --------TGPKICQKYIE 689 (871)
Q Consensus 679 --------~~~~IvQkYI~ 689 (871)
.+++|||+||+
T Consensus 181 ~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 181 AQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred HHhhccccCCCEEEEEecC
Confidence 25799999997
No 80
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=97.51 E-value=0.0034 Score=72.72 Aligned_cols=77 Identities=9% Similarity=0.101 Sum_probs=51.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
..+|..+.+.++++ |-| .|+++.+.+ ++.++++. -+-..|+||..++.|+|+.++++.+++....+
T Consensus 100 ~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~--------~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~ 168 (420)
T PRK00885 100 EGSKAFAKDFMARY-GIP--TAAYETFTDAEEALAYLDE--------KGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDD 168 (420)
T ss_pred HcCHHHHHHHHHHc-CCC--CCCeEEeCCHHHHHHHHHH--------cCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHH
Confidence 45666666777664 433 566555543 23333322 23468999999999999999999887655321
Q ss_pred ----------cCCcccccccc
Q 002880 679 ----------TGPKICQKYIE 689 (871)
Q Consensus 679 ----------~~~~IvQkYI~ 689 (871)
.++++||+||+
T Consensus 169 ~~~~~~~~~~~~~vlvEe~i~ 189 (420)
T PRK00885 169 MLAGNKFGDAGARVVIEEFLD 189 (420)
T ss_pred HhhcccccCCCCeEEEEEccC
Confidence 24689999997
No 81
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.51 E-value=0.0019 Score=71.77 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=63.3
Q ss_pred CcccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 600 SCLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 600 ~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
....+|..+.+.++++ |- -.|+|+.+.+ ..+....+. ....+-.+|+||..++.|+|+.++++.+++.+...
T Consensus 107 ~~~~dK~~~~~~l~~~-gi--p~p~~~~~~~-~~~~~~~~~---~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~ 179 (326)
T PRK12767 107 EICNDKWLTYEFLKEN-GI--PTPKSYLPES-LEDFKAALA---KGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY 179 (326)
T ss_pred HHHhcHHHHHHHHHHc-CC--CCCCEEcccC-HHHHHhhhh---cccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh
Confidence 4567888888888776 32 2577776543 222221110 12234679999999999999999999988876554
Q ss_pred cCCcccccccccccccCCceeeeeEEE
Q 002880 679 TGPKICQKYIEFPALFQGRKFDLRYIV 705 (871)
Q Consensus 679 ~~~~IvQkYI~~PlLi~grKFDlR~yV 705 (871)
..+++||+||. |+-+++.+++
T Consensus 180 ~~~~lvqeyi~------G~e~~v~~~~ 200 (326)
T PRK12767 180 VPNLIIQEFIE------GQEYTVDVLC 200 (326)
T ss_pred CCCeEEEeccC------CceEEEEEEE
Confidence 35899999995 6666665544
No 82
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=2.5e-05 Score=82.91 Aligned_cols=64 Identities=36% Similarity=0.561 Sum_probs=49.7
Q ss_pred CCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee-CC--CCCC-chhhHHhhhCCCcccccCcccc
Q 002880 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD-IP--GPLG-ESAIEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 301 ~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~-iP--~~l~-~~~~~Il~~L~~L~~Ln~~~vs 367 (871)
.|++|+.|+|+.|.|.+ ++.| .-|.++|+|++|-|+ .| ++-| ++.-+++..||||+.|+..+|+
T Consensus 61 rCtrLkElYLRkN~I~s--ldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 61 RCTRLKELYLRKNCIES--LDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred HHHHHHHHHHHhccccc--HHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 57888888888888887 3343 346899999999998 33 2222 5568999999999999999999
No 83
>PRK06849 hypothetical protein; Provisional
Probab=97.46 E-value=0.0019 Score=73.93 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=59.3
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc--
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-- 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-- 678 (871)
.+..|..+.+.+++. |- =+|+|+.+.+ ..++ ..+. .+..+..+|+||..++.|.|+.+..+.+.+.....
T Consensus 113 ~~~DK~~~~~~~~~~-Gi--pvP~t~~v~~-~~~l-~~~~---~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~~~ 184 (389)
T PRK06849 113 LLHNKWEFAEQARSL-GL--SVPKTYLITD-PEAI-RNFM---FKTPHTPYVLKPIYSRFVRRVDLLPKEAALKELPISK 184 (389)
T ss_pred HhhCHHHHHHHHHHc-CC--CCCCEEEeCC-HHHH-HHHh---hcCCCCcEEEEeCcccCCCeEEEecCHHHhcccccCC
Confidence 478899999988765 43 3689988754 1222 1111 11224689999999999999999888655544322
Q ss_pred cCCcccccccccccccCCceeeeeE
Q 002880 679 TGPKICQKYIEFPALFQGRKFDLRY 703 (871)
Q Consensus 679 ~~~~IvQkYI~~PlLi~grKFDlR~ 703 (871)
..++|||+||+ |..+.+..
T Consensus 185 ~~~~ivQe~I~------G~e~~~~~ 203 (389)
T PRK06849 185 DNPWVMQEFIQ------GKEYCSYS 203 (389)
T ss_pred CCCeEEEEEec------CCeEEEEE
Confidence 24699999998 55555443
No 84
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.45 E-value=0.0019 Score=73.79 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=54.1
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
..+|....+.|+++ |-|. |++..+.+ ++.++++ ..+-..|+||..++.|+|+.++++.+++.+..+
T Consensus 65 ~~dK~~~k~~l~~~-gIpt--p~~~~~~~~~ea~~~~~--------~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~ 133 (379)
T PRK13790 65 EGSKLFAKKIMEKY-NIPT--ADYKEVERKKDALTYIE--------NCELPVVVKKDGLAAGKGVIIADTIEAARSAIEI 133 (379)
T ss_pred hCCHHHHHHHHHHC-CCCC--CCEEEECCHHHHHHHHH--------hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHH
Confidence 35566666666654 4332 33333332 2222222 123578999999999999999999887765432
Q ss_pred ------cCCcccccccccccccCCceeeeeEE
Q 002880 679 ------TGPKICQKYIEFPALFQGRKFDLRYI 704 (871)
Q Consensus 679 ------~~~~IvQkYI~~PlLi~grKFDlR~y 704 (871)
.++.|||+||+ |+-+.+.++
T Consensus 134 ~~~~~~~~~vlvEe~i~------G~E~sv~~~ 159 (379)
T PRK13790 134 MYGDEEEGTVVFETFLE------GEEFSLMTF 159 (379)
T ss_pred HHhcCCCCeEEEEEccc------CceEEEEEE
Confidence 24689999997 566666554
No 85
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.45 E-value=0.00011 Score=57.51 Aligned_cols=39 Identities=33% Similarity=0.547 Sum_probs=32.2
Q ss_pred CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccccc
Q 002880 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (871)
Q Consensus 181 p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~ 222 (871)
++|+.|+|++|+|+++ ++.+++|++|+.|+|++|+|+..
T Consensus 1 ~~L~~L~l~~N~i~~l---~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL---PPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSH---GGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCccc---CchHhCCCCCCEEEecCCCCCCC
Confidence 5899999999999975 44699999999999999999654
No 86
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=4.2e-05 Score=80.92 Aligned_cols=65 Identities=29% Similarity=0.362 Sum_probs=40.2
Q ss_pred CCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeC--CCCCCchhhHHhhhCCCcccccCcccchh
Q 002880 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI--PGPLGESAIEILESLPTLCTLNGVTASKI 369 (871)
Q Consensus 302 l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~i--P~~l~~~~~~Il~~L~~L~~Ln~~~vs~~ 369 (871)
+|+|++|+|++|+|..++ .+ .-+..+++|.+|++.. |..+.++.-++...+++|+.|++.++...
T Consensus 90 ~P~l~~l~ls~Nki~~ls--tl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLS--TL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred CCceeEEeecCCcccccc--cc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 466666666666655422 11 1234555566666652 22244666788889999999999998843
No 87
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=0.00011 Score=57.47 Aligned_cols=40 Identities=38% Similarity=0.626 Sum_probs=32.6
Q ss_pred CccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcc
Q 002880 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNS 319 (871)
Q Consensus 277 ~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~ 319 (871)
++|+.|+|++|+|+.+ |..+. .|++|+.|+|++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~l-~~~l~--~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-PPELS--NLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSH-GGHGT--TCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCccc-CchHh--CCCCCCEEEecCCCCCCCc
Confidence 4689999999999988 44566 8999999999999999744
No 88
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00016 Score=74.01 Aligned_cols=125 Identities=29% Similarity=0.388 Sum_probs=87.6
Q ss_pred EEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCC
Q 002880 158 WLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237 (871)
Q Consensus 158 ~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~ 237 (871)
.++|.+..|.... ++....-+...++|++|.|..+ ..|..+++|..|.|++|.|+...+ .+...
T Consensus 23 e~~LR~lkip~ie----nlg~~~d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~nNrIt~I~p-----~L~~~--- 86 (233)
T KOG1644|consen 23 ELDLRGLKIPVIE----NLGATLDQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNNNRITRIDP-----DLDTF--- 86 (233)
T ss_pred ccccccccccchh----hccccccccceecccccchhhc----ccCCCccccceEEecCCcceeecc-----chhhh---
Confidence 3455555554322 1334456788899999998754 468889999999999999977651 22121
Q ss_pred ccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCC
Q 002880 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317 (871)
Q Consensus 238 Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~ 317 (871)
+++|..|-|++|.|..+. +.-....||+|++|-+-+|+++.
T Consensus 87 --------------------------------------~p~l~~L~LtnNsi~~l~-dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 87 --------------------------------------LPNLKTLILTNNSIQELG-DLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred --------------------------------------ccccceEEecCcchhhhh-hcchhccCCccceeeecCCchhc
Confidence 556888999999998873 33333379999999999999876
Q ss_pred cchHHH-HHHhcCCCCcceeEee
Q 002880 318 NSVREL-LEVLKGFPCLQSLGVD 339 (871)
Q Consensus 318 l~~~~i-~~~l~~lp~L~~L~L~ 339 (871)
.. .- ...+..+|+|+.|+..
T Consensus 128 k~--~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 128 KK--NYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cc--CceeEEEEecCcceEeehh
Confidence 22 00 1236778999999987
No 89
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=97.40 E-value=0.0011 Score=69.70 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=64.2
Q ss_pred HHHHHHHcCCcEEeCCCCCceEEEeccCCcchHHhhhCCCCCcEEccccCCCcccccHHHHHHHHHhcCCCCcccceecc
Q 002880 549 YVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNL 628 (871)
Q Consensus 549 ~V~~~L~~~gf~~~~~~~~~di~W~~~~~~~~~~~~~~l~~~q~vN~fP~~~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L 628 (871)
.+.+.|+.....++-.|++-.++..-...-..+....+-+|.. ..+-+.|...++.++.+ -..|+|+.+
T Consensus 66 ~~ek~le~~Da~LvIAPEdd~lLy~Ltri~E~~~~nLG~S~~A-------i~v~aDK~lty~aLr~a----V~~p~t~e~ 134 (307)
T COG1821 66 DEEKALEKADATLVIAPEDDGLLYSLTRIYEEYVENLGCSPRA-------IRVAADKRLTYKALRDA----VKQPPTREW 134 (307)
T ss_pred HHHHHHhcCCeeEEEecCcCChHHHHHHHHHHHhHhhCCCHHH-------HhHhhhHHHHHHHHhhh----ccCCCcccc
Confidence 4777787655555544444444433322211221111111111 12456777888888755 367788743
Q ss_pred CCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhccCCcccccccc
Q 002880 629 ETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIE 689 (871)
Q Consensus 629 ~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~~~~~IvQkYI~ 689 (871)
. .....+|+||..+++|.||.+..+..++ .|+|.||+
T Consensus 135 ~----------------~~~~k~ViKp~dgCgge~i~~~~~~pd~--------~i~qEfIe 171 (307)
T COG1821 135 A----------------EEPKKYVIKPADGCGGEGILFGRDFPDI--------EIAQEFIE 171 (307)
T ss_pred c----------------cCCceEEecccccCCcceeeccCCCcch--------hhHHHhcC
Confidence 2 1347889999999999999998876654 68999998
No 90
>PRK06524 biotin carboxylase-like protein; Validated
Probab=97.39 E-value=0.0021 Score=74.81 Aligned_cols=138 Identities=12% Similarity=-0.029 Sum_probs=79.1
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhcc----CCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEc--ce
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLMET----GPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSD--VF 721 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~~----~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~--~g 721 (871)
+-..++||..++.|+|+.++++.+++.+..+. ...+||+||. |+-+.+=+++.-. ......... -|
T Consensus 181 GyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~------GrEitVev~vd~d--G~Vv~~~~~e~vg 252 (493)
T PRK06524 181 GDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR------NVEVCIEACVTRH--GTVIGPAMTSLVG 252 (493)
T ss_pred CCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC------cEEEEEEEEEeCC--CCEEecccccccc
Confidence 45689999999999999999999888776543 3568898885 5554443332210 000000000 00
Q ss_pred EEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 722 WVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 722 ~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
..++. +|.. +.+- .+- .. ...-+.+.++|.+++.+++.+... -
T Consensus 253 ~~Ei~--~yr~----------G~~~-~~i-----------~P------A~L~~ei~eeIqeiA~ka~~aL~~-------l 295 (493)
T PRK06524 253 YPELT--PYRG----------GWCG-NDI-----------WP------GALPPAQTRKAREMVRKLGDVLSR-------E 295 (493)
T ss_pred ceEEE--EccC----------CeEE-EEE-----------cc------CCCCHHHHHHHHHHHHHHHHHhhc-------C
Confidence 00110 1110 0000 000 00 001134556677777766665421 2
Q ss_pred CcEEEEeeeEEEcC-CCceEEEEecCCCCC
Q 002880 802 KSRAMYGVDIMLDS-SFQPKLLEVTYCPDC 830 (871)
Q Consensus 802 ~~fel~G~D~mlD~-~~kpwLLEVN~~P~l 830 (871)
.|..++++||++|. ++++|++|||..|+=
T Consensus 296 G~~Gv~rVDFfvd~ddgevYfnEINPR~~G 325 (493)
T PRK06524 296 GYRGYFEVDLLHDLDADELYLGEVNPRLSG 325 (493)
T ss_pred CCEEEEEEEEEEECCCCeEEEEEEeCCccc
Confidence 47899999999995 699999999988765
No 91
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.39 E-value=0.0025 Score=80.60 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=61.4
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
...+|..+.+.++++ |-+ .|+++.+.+ ++.++... .+-.+|+||..++.|+|+.++++.+++....+
T Consensus 104 ~~~dK~~~r~~L~~~-GIp--~P~~~~v~~~~e~~~~~~~--------~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~ 172 (887)
T PRK02186 104 TCRDKKRLARTLRDH-GID--VPRTHALALRAVALDALDG--------LTYPVVVKPRMGSGSVGVRLCASVAEAAAHCA 172 (887)
T ss_pred HhcCHHHHHHHHHHc-CCC--CCCEEEeCCHHHHHHHHHh--------CCCCEEEEeCCCCCCCCeEEECCHHHHHHHHH
Confidence 356777777777765 433 577776654 33333322 23568999999999999999999888766442
Q ss_pred ------cCCcccccccccccccCCceeeeeEEE
Q 002880 679 ------TGPKICQKYIEFPALFQGRKFDLRYIV 705 (871)
Q Consensus 679 ------~~~~IvQkYI~~PlLi~grKFDlR~yV 705 (871)
.++++||+||+ |.-|.+..++
T Consensus 173 ~~~~~~~~~~lvEEfI~------G~E~sVe~i~ 199 (887)
T PRK02186 173 ALRRAGTRAALVQAYVE------GDEYSVETLT 199 (887)
T ss_pred HHHhcCCCcEEEeeccc------CCcEEEEEEE
Confidence 46799999997 5666666544
No 92
>PRK07206 hypothetical protein; Provisional
Probab=97.37 E-value=0.0029 Score=72.97 Aligned_cols=88 Identities=13% Similarity=0.195 Sum_probs=59.5
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccC-CCceEEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDG-LNNLWILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~-~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
...+|..+.+.++++ |- -.|+++.+.+ ++.++++.. + .+..+|+||..++.|+|++++++.+++.+..
T Consensus 105 ~~~dK~~~r~~l~~~-gi--~~p~~~~~~~~~e~~~~~~~~------g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~ 175 (416)
T PRK07206 105 ARRNKAEMINALAEA-GL--PAARQINTADWEEAEAWLREN------GLIDRPVVIKPLESAGSDGVFICPAKGDWKHAF 175 (416)
T ss_pred HhhCHHHHHHHHHHc-CC--CcccEEecCCHHHHHHHHHhc------CCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHH
Confidence 457888888888765 32 2566666543 344443321 1 1347899999999999999999988876543
Q ss_pred c------------cCCcccccccccccccCCceeeeeE
Q 002880 678 E------------TGPKICQKYIEFPALFQGRKFDLRY 703 (871)
Q Consensus 678 ~------------~~~~IvQkYI~~PlLi~grKFDlR~ 703 (871)
+ ...++||+||+ |.-|.+-+
T Consensus 176 ~~~~~~~~~~~~~~~~~lvEe~i~------G~E~sv~~ 207 (416)
T PRK07206 176 NAILGKANKLGLVNETVLVQEYLI------GTEYVVNF 207 (416)
T ss_pred HHHHhccccCCCCCCeEEEEEccc------cEEEEEEE
Confidence 2 24689999997 55555544
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=5.2e-05 Score=81.28 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=115.0
Q ss_pred CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccc
Q 002880 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (871)
Q Consensus 181 p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~ 260 (871)
..|+.|+||.-.|+ ....-..++.|.+||.|.|.+|++.+.. ...| ..=.+|+.+|++.|+.+++.++....
T Consensus 185 sRlq~lDLS~s~it-~stl~~iLs~C~kLk~lSlEg~~LdD~I----~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~-- 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT-VSTLHGILSQCSKLKNLSLEGLRLDDPI----VNTI-AKNSNLVRLNLSMCSGFTENALQLLL-- 256 (419)
T ss_pred hhhHHhhcchhhee-HHHHHHHHHHHHhhhhccccccccCcHH----HHHH-hccccceeeccccccccchhHHHHHH--
Confidence 35999999999987 4556678999999999999999995433 3333 34467899999888777665433221
Q ss_pred cCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeC
Q 002880 261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340 (871)
Q Consensus 261 ~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~i 340 (871)
..++.|..||||=|.++...-.+....--++|..|||+|..-. +....+.-+...||+|..|+|+-
T Consensus 257 -------------~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-l~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 257 -------------SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-LQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred -------------HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-hhhhHHHHHHHhCCceeeecccc
Confidence 2377899999999999876544443334689999999987532 22346777889999999999997
Q ss_pred CCCCCchhhHHhhhCCCcccc
Q 002880 341 PGPLGESAIEILESLPTLCTL 361 (871)
Q Consensus 341 P~~l~~~~~~Il~~L~~L~~L 361 (871)
...+.+.-..++..++-|+.|
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred ccccCchHHHHHHhcchheee
Confidence 777777544555556555544
No 94
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=97.32 E-value=0.0072 Score=70.21 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=33.3
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----------cCCcccccccc
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----------TGPKICQKYIE 689 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----------~~~~IvQkYI~ 689 (871)
+-..|+||..++.|+|+.++++.+++.+..+ ....|||+||+
T Consensus 143 ~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~ 195 (426)
T PRK13789 143 MLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME 195 (426)
T ss_pred CCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC
Confidence 3578999999999999999999887665332 12579999997
No 95
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.30 E-value=2.7e-05 Score=75.00 Aligned_cols=127 Identities=19% Similarity=0.182 Sum_probs=84.9
Q ss_pred chhhHHHhhhcccccCCCCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCC
Q 002880 136 NVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLN 215 (871)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls 215 (871)
.|.+++++|-. + .++..|+|++|.|-...-..-.+ .+-..|+..+|++|.+.+++. ....+.+.+..|+|+
T Consensus 15 gV~evVerced-a-----kE~h~ldLssc~lm~i~davy~l-~~~~el~~i~ls~N~fk~fp~--kft~kf~t~t~lNl~ 85 (177)
T KOG4579|consen 15 GVNEVVERCED-A-----KELHFLDLSSCQLMYIADAVYML-SKGYELTKISLSDNGFKKFPK--KFTIKFPTATTLNLA 85 (177)
T ss_pred hHHHHHHhhHH-H-----HHhhhcccccchhhHHHHHHHHH-hCCceEEEEecccchhhhCCH--HHhhccchhhhhhcc
Confidence 35667777721 1 24578889999765422222112 234577888999999886532 344566788999999
Q ss_pred CCcccccccccchhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccc
Q 002880 216 NNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295 (871)
Q Consensus 216 ~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~ 295 (871)
+|.|.+.. . ....+++|+.||++.|.+... |.
T Consensus 86 ~neisdvP-----e------------------------------------------E~Aam~aLr~lNl~~N~l~~~-p~ 117 (177)
T KOG4579|consen 86 NNEISDVP-----E------------------------------------------ELAAMPALRSLNLRFNPLNAE-PR 117 (177)
T ss_pred hhhhhhch-----H------------------------------------------HHhhhHHhhhcccccCccccc-hH
Confidence 99884432 1 112367788888888888887 55
Q ss_pred cCCCCCCCCcceEeccCCCCCCcchH
Q 002880 296 AFSPAEMPSLSHLNIRGNPLEQNSVR 321 (871)
Q Consensus 296 ~~~~~~l~~L~~LnLs~N~L~~l~~~ 321 (871)
.+. .|.+|-+|+.-+|.+..++.+
T Consensus 118 vi~--~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 118 VIA--PLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HHH--HHHhHHHhcCCCCccccCcHH
Confidence 555 588888888888888877655
No 96
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.30 E-value=7.8e-05 Score=86.04 Aligned_cols=109 Identities=31% Similarity=0.377 Sum_probs=82.6
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
-..+..|+|.+|.|....- ....+++|+.|+|++|+|+++. .+..|+.|+.|++++|.|....
T Consensus 94 ~~~l~~l~l~~n~i~~i~~----~l~~~~~L~~L~ls~N~I~~i~----~l~~l~~L~~L~l~~N~i~~~~--------- 156 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN----LLSSLVNLQVLDLSFNKITKLE----GLSTLTLLKELNLSGNLISDIS--------- 156 (414)
T ss_pred ccceeeeeccccchhhccc----chhhhhcchheecccccccccc----chhhccchhhheeccCcchhcc---------
Confidence 3678999999999876321 1567899999999999999864 4788888999999999996654
Q ss_pred hcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccC
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~ 312 (871)
++ ..+.+|+.|+|++|.|..+.+.... .+.+|+.|.|.+
T Consensus 157 -~~--------------------------------------~~l~~L~~l~l~~n~i~~ie~~~~~--~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 157 -GL--------------------------------------ESLKSLKLLDLSYNRIVDIENDELS--ELISLEELDLGG 195 (414)
T ss_pred -CC--------------------------------------ccchhhhcccCCcchhhhhhhhhhh--hccchHHHhccC
Confidence 11 1166788888888888887551022 678888888888
Q ss_pred CCCCCcc
Q 002880 313 NPLEQNS 319 (871)
Q Consensus 313 N~L~~l~ 319 (871)
|.+..+.
T Consensus 196 n~i~~i~ 202 (414)
T KOG0531|consen 196 NSIREIE 202 (414)
T ss_pred Cchhccc
Confidence 8887644
No 97
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.28 E-value=7.1e-05 Score=86.16 Aligned_cols=197 Identities=20% Similarity=0.191 Sum_probs=109.2
Q ss_pred EEeeeeccchHHHHHHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeE
Q 002880 79 VDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKW 158 (871)
Q Consensus 79 idhawt~~~~~~~~ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (871)
+||-=|-..+--|+-+.++|.-..-...|..+-+..|+ +-.+++ .+..+ +-+..
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~------~i~~L-------------------~~lt~ 125 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPE------AICNL-------------------EALTF 125 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecch------hhhhh-------------------hHHHH
Confidence 56665666666677777777777776666666555442 222232 01111 12445
Q ss_pred EeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCc
Q 002880 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKL 238 (871)
Q Consensus 159 L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~L 238 (871)
|+|+.|.++-. +.. ++.| -|+.|-+++|+|+.+ |..++.+++|..||.|.|.+.... .-..++..|
T Consensus 126 l~ls~NqlS~l---p~~-lC~l-pLkvli~sNNkl~~l---p~~ig~~~tl~~ld~s~nei~slp------sql~~l~sl 191 (722)
T KOG0532|consen 126 LDLSSNQLSHL---PDG-LCDL-PLKVLIVSNNKLTSL---PEEIGLLPTLAHLDVSKNEIQSLP------SQLGYLTSL 191 (722)
T ss_pred hhhccchhhcC---Chh-hhcC-cceeEEEecCccccC---CcccccchhHHHhhhhhhhhhhch------HHhhhHHHH
Confidence 66666665431 111 1222 367777777777754 455667777777777777773322 112233334
Q ss_pred cccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCc
Q 002880 239 EIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQN 318 (871)
Q Consensus 239 e~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l 318 (871)
..+++...... .+|..+. .=.|..||+|.|+|+.+ |-.|. .|..|++|-|-+|+|.+=
T Consensus 192 r~l~vrRn~l~--------------~lp~El~-----~LpLi~lDfScNkis~i-Pv~fr--~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 192 RDLNVRRNHLE--------------DLPEELC-----SLPLIRLDFSCNKISYL-PVDFR--KMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHHHHhhhhhh--------------hCCHHHh-----CCceeeeecccCceeec-chhhh--hhhhheeeeeccCCCCCC
Confidence 44443322111 1111110 11378899999999998 77777 899999999999999883
Q ss_pred chHHHHHHhcCCCCcceeEee
Q 002880 319 SVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 319 ~~~~i~~~l~~lp~L~~L~L~ 339 (871)
| .-...-|...=-++|+..
T Consensus 250 P--AqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 250 P--AQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred h--HHHHhccceeeeeeecch
Confidence 3 212222333334555554
No 98
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=97.28 E-value=0.0085 Score=69.35 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=52.0
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCce-EEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNL-WILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~-WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
....|..+.+.++++ |-+ .|++..+.+ ++.++++.+ +-. +|+||..++.|+|+.++++.+++.+..
T Consensus 101 ~~~dK~~~k~~l~~~-gIp--~p~~~~~~~~~~~~~~~~~~--------g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~ 169 (423)
T TIGR00877 101 LEGSKAFAKDFMKRY-GIP--TAEYEVFTDPEEALSYIQEK--------GAPAIVVKADGLAAGKGVIVAKTNEEAIKAV 169 (423)
T ss_pred HHCCHHHHHHHHHHC-CCC--CCCeEEECCHHHHHHHHHhc--------CCCeEEEEECCCCCCCCEEEECCHHHHHHHH
Confidence 346777777777765 433 455544433 233333321 234 999999999999999999988765532
Q ss_pred c----------cCCcccccccc
Q 002880 678 E----------TGPKICQKYIE 689 (871)
Q Consensus 678 ~----------~~~~IvQkYI~ 689 (871)
. ..+++||+||+
T Consensus 170 ~~~~~~~~g~~~~~~lvEe~i~ 191 (423)
T TIGR00877 170 EEILEQKFGDAGERVVIEEFLD 191 (423)
T ss_pred HHHHHHhcCCCCCeEEEEECcc
Confidence 1 24689999997
No 99
>PRK05586 biotin carboxylase; Validated
Probab=97.25 E-value=0.0045 Score=72.32 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=50.5
Q ss_pred cccccHHHHHHHHHhcCCCCccccee-ccCCC---hhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY-NLETH---LPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf-~L~~e---l~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
....|..+.+.++++ |-+ .|+++ ..-.+ +.++.+. -+-..|+||..++.|+|+.++++.+++.+.
T Consensus 112 ~~~DK~~~k~~l~~~-GIp--vp~~~~~~~~~~~e~~~~~~~--------igyPvvvKP~~gggg~Gv~~v~~~~el~~a 180 (447)
T PRK05586 112 LMGNKSNAREIMIKA-GVP--VVPGSEGEIENEEEALEIAKE--------IGYPVMVKASAGGGGRGIRIVRSEEELIKA 180 (447)
T ss_pred hhCCHHHHHHHHHHC-CCC--CCCCcccccCCHHHHHHHHHH--------cCCCEEEEECCCCCCCeeEEECCHHHHHHH
Confidence 356777777766654 321 33332 22122 2233222 235689999999999999999998887654
Q ss_pred hc-----------cCCccccccccc
Q 002880 677 ME-----------TGPKICQKYIEF 690 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~ 690 (871)
.+ .++++||+||+.
T Consensus 181 ~~~~~~~~~~~~~~~~vivEe~i~g 205 (447)
T PRK05586 181 FNTAKSEAKAAFGDDSMYIEKFIEN 205 (447)
T ss_pred HHHHHHHHHHhcCCCeEEEEecCCC
Confidence 32 357899999974
No 100
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.22 E-value=0.0049 Score=79.49 Aligned_cols=86 Identities=14% Similarity=0.219 Sum_probs=56.2
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
..+|..+.+.++++ |-+ .|+++.+.+ ++.++.+. .+-.+|+||..++.|+|+.++.+.+++...++
T Consensus 667 ~~DK~~~~~~L~~~-GIp--~P~~~~~~s~ee~~~~~~~--------igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~ 735 (1066)
T PRK05294 667 AEDRERFSKLLEKL-GIP--QPPNGTATSVEEALEVAEE--------IGYPVLVRPSYVLGGRAMEIVYDEEELERYMRE 735 (1066)
T ss_pred hCCHHHHHHHHHHc-CcC--CCCeEEECCHHHHHHHHHh--------cCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHH
Confidence 35666666666554 322 466665543 22233221 23579999999999999999999888765433
Q ss_pred ------cCCcccccccccccccCCceeeeeE
Q 002880 679 ------TGPKICQKYIEFPALFQGRKFDLRY 703 (871)
Q Consensus 679 ------~~~~IvQkYI~~PlLi~grKFDlR~ 703 (871)
..+.+||+||+-+ +-+++.+
T Consensus 736 a~~~s~~~~vlIEefI~G~-----~E~sV~~ 761 (1066)
T PRK05294 736 AVKVSPDHPVLIDKFLEGA-----IEVDVDA 761 (1066)
T ss_pred HHhhCCCCcEEEEecCCCC-----EEEEEEE
Confidence 3578999999842 1456654
No 101
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.19 E-value=0.0068 Score=76.36 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=58.6
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEE-ecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSV-TDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v-~~~l~~i~~~~ 677 (871)
....|....+.++++ |-| +|++..+.+ ++.++... .+-..++||..++.|+|+.+ +.+.+++.+..
T Consensus 210 ia~DK~~tk~lL~~~-GIp--vP~~~~~~s~~ea~~~~~~--------ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~ 278 (864)
T TIGR02068 210 IACDKDLTKEILSDA-GVP--VPEGTVVQSAEDAWEAAQD--------LGYPVVIKPYDGNHGRGVTINILTRDEIESAY 278 (864)
T ss_pred HHcCHHHHHHHHHHc-CcC--CCCEEEECCHHHHHHHHHH--------cCCCEEEEECCCCCccCEEEEeCCHHHHHHHH
Confidence 455677777777654 433 677766543 22222222 23567999999999999998 88877766543
Q ss_pred c-----cCCcccccccccccccCCceeeeeEEEE
Q 002880 678 E-----TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 678 ~-----~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
+ ...++||+||. | -|+|++|+
T Consensus 279 ~~a~~~~~~vlVEefI~------G--~e~rvlVv 304 (864)
T TIGR02068 279 EAAVEESSGVIVERFIT------G--RDHRLLVV 304 (864)
T ss_pred HHHHhhCCcEEEEEecc------C--CEEEEEEE
Confidence 2 35799999996 5 38888665
No 102
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=97.17 E-value=0.0079 Score=70.32 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=52.4
Q ss_pred cccccHHHHHHHHHhcCCCCccccee-ccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY-NLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf-~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
....|..+.+.++++ |-+ .|+++ .+.++..+... +. ...+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 112 ~~~DK~~~r~~l~~~-gip--~pp~~~~~~~~~~e~~~-~~----~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~ 183 (449)
T TIGR00514 112 LMGDKVSAIETMKKA-GVP--CVPGSDGLVEDEEENVR-IA----KRIGYPVIIKATAGGGGRGMRVVREPDELVKSISM 183 (449)
T ss_pred HhCCHHHHHHHHHHC-CCC--CCCCcccCcCCHHHHHH-HH----HHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHH
Confidence 467788888877765 321 23332 23333333211 11 1123568999999999999999999888766542
Q ss_pred ----------cCCccccccccc
Q 002880 679 ----------TGPKICQKYIEF 690 (871)
Q Consensus 679 ----------~~~~IvQkYI~~ 690 (871)
...++||+||+.
T Consensus 184 ~~~~~~~~~~~~~vlvEe~i~g 205 (449)
T TIGR00514 184 TRAEAKAAFGNDGVYIEKYIEN 205 (449)
T ss_pred HHHHHHHhCCCCCEEEEECCCC
Confidence 246899999974
No 103
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.14 E-value=2.1e-05 Score=90.40 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=42.4
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccccc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~ 222 (871)
.....||+.|.+.+.... .+.|-.|+.|.|+.|.|-. +|..+++|..|..|+||.|+++..
T Consensus 76 dt~~aDlsrNR~~elp~~----~~~f~~Le~liLy~n~~r~---ip~~i~~L~~lt~l~ls~NqlS~l 136 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEE----ACAFVSLESLILYHNCIRT---IPEAICNLEALTFLDLSSNQLSHL 136 (722)
T ss_pred chhhhhccccccccCchH----HHHHHHHHHHHHHhcccee---cchhhhhhhHHHHhhhccchhhcC
Confidence 345566676666542221 3556778888888888765 466788888888888888888544
No 104
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.09 E-value=0.0052 Score=77.10 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=92.7
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
+-..|+||.++..|.||.++++.+++.+.++ ..+.+|++||. .||-| .+-|+...- + .++-....
T Consensus 610 g~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-----~grEi--~v~vl~~~~-~--~~~~~~~~ 679 (809)
T PRK14573 610 SFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-----GSREI--EVSCLGDGS-S--AYVIAGPH 679 (809)
T ss_pred CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-----CCEEE--EEEEEeCCC-C--ceEeccce
Confidence 3468999999999999999999888776543 34677888764 24543 333333211 0 11000000
Q ss_pred EEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 723 VRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQ-VKWLEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 723 vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~-~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
-+..... +-+|.. +|... ....... ..+ ..-+++.++|+++..+++.+.
T Consensus 680 e~~~~~~-------f~dy~~-----Ky~~~--g~~~~~~------~~Pa~l~~~~~~~i~~~a~~~~~aL---------- 729 (809)
T PRK14573 680 ERRGSGG-------FIDYQE-----KYGLS--GKSSAQI------VFDLDLSKESQEQVLELAERIYRLL---------- 729 (809)
T ss_pred EEccCCC-------eeCchh-----cccCC--CCCceEE------ecCCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 0111000 111111 11100 0000000 001 011456677888877777664
Q ss_pred CcEEEEeeeEEEcCCCceEEEEecCCCCCCccccccccccccccccccccchhhhh
Q 002880 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKYDTEALVTGEVVKGADFFNYVF 857 (871)
Q Consensus 802 ~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~~~~~~~~~~~~~~p~f~n~~f 857 (871)
+|.....+||++|.+++||++|||..|++...+.+-+.....| +.++++++.+-
T Consensus 730 g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G--~~~~~li~~ii 783 (809)
T PRK14573 730 QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPFLTAFVRKG--WTYEQIVHQLI 783 (809)
T ss_pred CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHHHHHHHHcC--CCHHHHHHHHH
Confidence 2678899999999999999999999999987665532221112 34555555543
No 105
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.07 E-value=0.0088 Score=76.97 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=57.7
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
..+|..+.+.+++. |- -.|+++.+.+ ++.++... .+-.+|+||..+..|+|+.++.+.+++.+.++
T Consensus 667 ~~DK~~f~~lL~~~-GI--p~P~~~~v~s~ee~~~~~~~--------igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~ 735 (1050)
T TIGR01369 667 AEDREKFSELLDEL-GI--PQPKWKTATSVEEAVEFASE--------IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEE 735 (1050)
T ss_pred HCCHHHHHHHHHHC-Cc--CCCCeEEECCHHHHHHHHHh--------cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHH
Confidence 45566666555543 32 2566665543 23333221 23569999999999999999999888766442
Q ss_pred ------cCCcccccccccccccCCceeeeeEE
Q 002880 679 ------TGPKICQKYIEFPALFQGRKFDLRYI 704 (871)
Q Consensus 679 ------~~~~IvQkYI~~PlLi~grKFDlR~y 704 (871)
..+++||+||+. |+-+++.++
T Consensus 736 a~~~s~~~~vlVeefI~~-----G~E~~Vd~l 762 (1050)
T TIGR01369 736 AVEVSPEHPVLIDKYLED-----AVEVDVDAV 762 (1050)
T ss_pred HHHhCCCCCEEEeecCCC-----CeEEEEEEE
Confidence 357999999984 666776654
No 106
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.02 E-value=0.015 Score=67.99 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=51.0
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCC---hhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETH---LPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~e---l~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
....|..+.+.++++ |-+ ..|.++..-++ +.++... .+-.+|+||..++.|+|+.++++.+++.+..
T Consensus 112 ~~~DK~~~r~~l~~~-gIp-~pp~~~~~v~~~~~~~~~~~~--------~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~ 181 (451)
T PRK08591 112 LMGDKVTAKATMKKA-GVP-VVPGSDGPVDDEEEALAIAKE--------IGYPVIIKATAGGGGRGMRVVRTEAELEKAF 181 (451)
T ss_pred HhcCHHHHHHHHHHc-CCC-CCCCcccccCCHHHHHHHHHH--------cCCCEEEEECCCCCCceEEEECCHHHHHHHH
Confidence 356777777777655 322 22222222222 2233222 2356899999999999999999988876544
Q ss_pred c-----------cCCccccccccc
Q 002880 678 E-----------TGPKICQKYIEF 690 (871)
Q Consensus 678 ~-----------~~~~IvQkYI~~ 690 (871)
+ ...++||+||+.
T Consensus 182 ~~~~~~~~~~~~~~~vlvEe~i~g 205 (451)
T PRK08591 182 SMARAEAKAAFGNPGVYMEKYLEN 205 (451)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCC
Confidence 3 246899999974
No 107
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.00 E-value=0.011 Score=67.02 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=83.8
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc----------cCCcccccccccccccCCceeeeeEEEEE-ee-ecCc---
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME----------TGPKICQKYIEFPALFQGRKFDLRYIVLV-RS-MDPL--- 713 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~----------~~~~IvQkYI~~PlLi~grKFDlR~yVLv-tS-~~PL--- 713 (871)
...|+||..++.|+|++++++.+++.+..+ ...++||+||. |.-|.+-+++-. .. +.-+
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~s~~~~~~e~l~id 223 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFYSPIKNRLELLGID 223 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEEeccCCeEEEEeec
Confidence 467999999999999999999887765432 36789999998 666666554420 00 0000
Q ss_pred EEEEE-cceEEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 002880 714 EIFLS-DVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAA 792 (871)
Q Consensus 714 ~vy~y-~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~ 792 (871)
+-|.- .+|+.|+-.++..... ....++... +.. -...+.+.+++.++...++.++.
T Consensus 224 ~r~~~~~d~~~r~p~~~~~~~~-----~~p~~v~~G------n~P------------~~~resll~~v~~~~~~~v~a~~ 280 (358)
T PRK13278 224 RRYESNIDGLVRIPAKDQLELG-----IDPTYVVVG------NIP------------VVLRESLLPQVFEYGERFVETSK 280 (358)
T ss_pred eeeeecccceeeccchhhhhcc-----cCCceeEec------cee------------ccchHhHHHHHHHHHHHHHHHHH
Confidence 11221 2355553333221000 011111110 000 01123455566666666666655
Q ss_pred hhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCC
Q 002880 793 VAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCP 828 (871)
Q Consensus 793 ~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P 828 (871)
...++ ....-+.+|+++++++++|++|||..+
T Consensus 281 ~~~~~----~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 281 ELVPP----GMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred HhcCc----cccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 44422 233556888999999999999998776
No 108
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.99 E-value=0.00038 Score=77.88 Aligned_cols=218 Identities=19% Similarity=0.162 Sum_probs=141.5
Q ss_pred hhhHHHhhhcccccCCCCceeEEeeccc-cccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCC
Q 002880 137 VEDILESEIHNATEKGDGTVKWLELEDA-DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLN 215 (871)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~L~L~~~-~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls 215 (871)
|.-++.+|+ ..++.|.|.+| ++.+.++-. ...+|||++.|.+.++...+-...-..-..|++|++|+|.
T Consensus 129 V~~~~~Rcg--------g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~ 198 (483)
T KOG4341|consen 129 VENMISRCG--------GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH 198 (483)
T ss_pred eehHhhhhc--------cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc
Confidence 344556664 45788899998 677765555 5688999999999999755444455566789999999999
Q ss_pred CCcccccccccchhHHhhcCCCcccccccccccccccccc----ccccccCCCCCCCccccC-------CcCCccceeec
Q 002880 216 NNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALG----FCGEVYDKDNPSSLCLRD-------RPLQSVTSLDL 284 (871)
Q Consensus 216 ~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~----~~~~~~~~~~~~~i~~~~-------~~l~~L~~LdL 284 (871)
.+.... ....+.+..+||+|+.+|++.+..+..-++. -|.........+|...++ .....|..+||
T Consensus 199 ~c~~iT---~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 199 SCSSIT---DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred ccchhH---HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 954422 2345667789999999999888554221111 111111111112222221 12223557776
Q ss_pred CCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchh-hHHhhhCCCcccccC
Q 002880 285 SNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA-IEILESLPTLCTLNG 363 (871)
Q Consensus 285 S~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~-~~Il~~L~~L~~Ln~ 363 (871)
-.|.+.+...-......+..|+.|+.++..-.+ ...|..+-.++++|+.|.+.-...+++.. ..+-..++.|+.|+-
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~--d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT--DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCc--hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 677655543322222358899999999887644 66777888999999999999666666654 444557888887776
Q ss_pred cccchh
Q 002880 364 VTASKI 369 (871)
Q Consensus 364 ~~vs~~ 369 (871)
-....+
T Consensus 354 e~~~~~ 359 (483)
T KOG4341|consen 354 EECGLI 359 (483)
T ss_pred ccccee
Confidence 665533
No 109
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=96.98 E-value=0.012 Score=69.26 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=53.3
Q ss_pred CcccccHHHHHHHHHhcCCCCcccceeccC-CChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 600 SCLVMKHHLAETVQKAHGSPEWLQPTYNLE-THLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 600 ~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~-~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
..+..|..+.+.++++ |- +..|.|+... .+..+..+ +. ..-+-.+|+||..|+.|+|+.++++.+++....+
T Consensus 110 ~~~~DK~~~k~~l~~~-gI-pvpp~~~~~~~~~~~~~~~-~~----~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~ 182 (478)
T PRK08463 110 RKMGNKNIARYLMKKN-GI-PIVPGTEKLNSESMEEIKI-FA----RKIGYPVILKASGGGGGRGIRVVHKEEDLENAFE 182 (478)
T ss_pred HhhCcHHHHHHHHHHc-CC-CCCCCccccCCCCHHHHHH-HH----HHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHH
Confidence 3567887777777765 32 2333344332 23332221 11 1123579999999999999999999888765432
Q ss_pred -----------cCCccccccccc
Q 002880 679 -----------TGPKICQKYIEF 690 (871)
Q Consensus 679 -----------~~~~IvQkYI~~ 690 (871)
.+..+||+||+.
T Consensus 183 ~~~~~a~~~~~~~~vlvEefI~~ 205 (478)
T PRK08463 183 SCKREALAYFNNDEVFMEKYVVN 205 (478)
T ss_pred HHHHHHHHhcCCCcEEEEecCCC
Confidence 357899999974
No 110
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.95 E-value=0.018 Score=67.20 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=51.1
Q ss_pred cccccHHHHHHHHHhcCCCCcccce--eccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPT--YNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~T--f~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
...+|..+.+.++++ |-+ .|++ +.+ .+..+... +. ...+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 112 ~~~dK~~~k~~l~~~-gIp--~p~~~~~~~-~~~~e~~~-~~----~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~ 182 (450)
T PRK06111 112 KMGSKIEARRAMQAA-GVP--VVPGITTNL-EDAEEAIA-IA----RQIGYPVMLKASAGGGGIGMQLVETEQELTKAFE 182 (450)
T ss_pred HhCCHHHHHHHHHHC-CCC--CCCCcCcCc-CCHHHHHH-HH----HHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHH
Confidence 356788887777765 322 2222 323 22222211 11 1123579999999999999999999888765432
Q ss_pred -----------cCCccccccccc
Q 002880 679 -----------TGPKICQKYIEF 690 (871)
Q Consensus 679 -----------~~~~IvQkYI~~ 690 (871)
.++++||+||+-
T Consensus 183 ~~~~~~~~~~~~~~~lvEe~i~g 205 (450)
T PRK06111 183 SNKKRAANFFGNGEMYIEKYIED 205 (450)
T ss_pred HHHHHHHHhcCCCcEEEEcccCC
Confidence 346899999974
No 111
>PRK08462 biotin carboxylase; Validated
Probab=96.94 E-value=0.015 Score=67.85 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=52.1
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCC---hhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETH---LPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~e---l~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
....|..+.+.++++ |- +..|.++..-.+ +.++.+. .+-.+|+||..++.|+|+.++++.+++....
T Consensus 114 ~~~dK~~~r~~l~~~-gI-p~pp~~~~~~~~~~~~~~~~~~--------~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~ 183 (445)
T PRK08462 114 LMSDKSKAKEVMKRA-GV-PVIPGSDGALKSYEEAKKIAKE--------IGYPVILKAAAGGGGRGMRVVEDESDLENLY 183 (445)
T ss_pred HhCCHHHHHHHHHHC-CC-CCCCCcccccCCHHHHHHHHHH--------cCCCEEEEeCCCCCCCCeEEECCHHHHHHHH
Confidence 357888888888765 32 122222222222 2233222 2457999999999999999999988876543
Q ss_pred c-----------cCCccccccccc
Q 002880 678 E-----------TGPKICQKYIEF 690 (871)
Q Consensus 678 ~-----------~~~~IvQkYI~~ 690 (871)
. .+..+||+||+.
T Consensus 184 ~~~~~~~~~~~~~~~vlvEe~i~g 207 (445)
T PRK08462 184 LAAESEALSAFGDGTMYMEKFINN 207 (445)
T ss_pred HHHHHHHHhccCCCcEEEeccCCC
Confidence 1 346899999974
No 112
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.90 E-value=0.021 Score=64.18 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=82.0
Q ss_pred ceEEecCCCCCC--CCcEEEecChHHHHHHhcc------------CCcccccccccccccCCceeeeeEEEE-Eee-ecC
Q 002880 649 NLWILKPWNMAR--TIDTSVTDDLSAVIRLMET------------GPKICQKYIEFPALFQGRKFDLRYIVL-VRS-MDP 712 (871)
Q Consensus 649 ~~WIvKP~~~sr--G~GI~v~~~l~~i~~~~~~------------~~~IvQkYI~~PlLi~grKFDlR~yVL-vtS-~~P 712 (871)
...||||..+++ |+|++++++.+++....+. ..++||+||. |.-|.+-+++- +.. +..
T Consensus 153 ~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F~s~l~g~ve~ 226 (366)
T PRK13277 153 RPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYFYSPIRDRLEL 226 (366)
T ss_pred ccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEEEeccCCcEEE
Confidence 568999999999 9999999998887665432 2456999997 77777776643 111 011
Q ss_pred cEEEE----EcceEEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhcc-chHHHHHHHHHHHHHHH
Q 002880 713 LEIFL----SDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQ-VKWLEIHQRVKNTIRSV 787 (871)
Q Consensus 713 L~vy~----y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~-~~w~~I~~~I~~~i~~~ 787 (871)
+.+-. --+|++|+..+. .+.. ....-++.. . +. + ...+.+.+++.++...+
T Consensus 227 l~id~R~esn~dg~~r~pa~~-ql~~----~~~p~~vv~-----G-~~-------------p~t~rEslle~v~e~ger~ 282 (366)
T PRK13277 227 LGIDRRIQSNLDGFVRLPAPQ-QLKL----NEEPRYIEV-----G-HE-------------PATIRESLLEKVFEIGEKF 282 (366)
T ss_pred EEEeeccccccccccccChhh-hhhc----ccCCceEEE-----c-Cc-------------cccchHHHHHHHHHHHHHH
Confidence 10000 013344432221 0000 000000100 0 00 0 11123455666666666
Q ss_pred HHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 788 FEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 788 ~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
..++....++ ....-|.+|+++++++++|++||| |-+....++
T Consensus 283 v~a~~~~~~p----g~iGpf~lQ~iv~~d~~~~V~EIn--pR~gGGtnl 325 (366)
T PRK13277 283 VEATKELYPP----GIIGPFTLQTIVTPDLDFVVYDVA--PRIGGGTNV 325 (366)
T ss_pred HHHhhhhcCc----ccccceEEEEEEcCCCcEEEEEEc--CCcCCCccc
Confidence 6665433222 234556788999999999999996 444443333
No 113
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.90 E-value=0.00061 Score=85.23 Aligned_cols=112 Identities=29% Similarity=0.290 Sum_probs=80.3
Q ss_pred cccccCCCCcEeeccCCc--cccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccc
Q 002880 175 NLSSKFPDLQALSLCGNK--LETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEW 252 (871)
Q Consensus 175 ~l~~~~p~L~~L~Ls~N~--L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~ 252 (871)
..+..||+|++|-+.+|. +..+ ....|..+|.|++||||+|.-.+. +
T Consensus 539 ~~~~~~~~L~tLll~~n~~~l~~i--s~~ff~~m~~LrVLDLs~~~~l~~------------L----------------- 587 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSDWLLEI--SGEFFRSLPLLRVLDLSGNSSLSK------------L----------------- 587 (889)
T ss_pred cCCCCCCccceEEEeecchhhhhc--CHHHHhhCcceEEEECCCCCccCc------------C-----------------
Confidence 345678899999999996 3321 234588899999999998744221 1
Q ss_pred cccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCC
Q 002880 253 ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332 (871)
Q Consensus 253 ~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~ 332 (871)
|..+. .|-+|++|||++..|+.+ |..+. .|.+|.+||+..+.-.. .++..+..+++
T Consensus 588 -------------P~~I~----~Li~LryL~L~~t~I~~L-P~~l~--~Lk~L~~Lnl~~~~~l~----~~~~i~~~L~~ 643 (889)
T KOG4658|consen 588 -------------PSSIG----ELVHLRYLDLSDTGISHL-PSGLG--NLKKLIYLNLEVTGRLE----SIPGILLELQS 643 (889)
T ss_pred -------------ChHHh----hhhhhhcccccCCCcccc-chHHH--HHHhhheeccccccccc----cccchhhhccc
Confidence 11222 277889999999999977 77777 89999999999877533 22455666899
Q ss_pred cceeEeeCC
Q 002880 333 LQSLGVDIP 341 (871)
Q Consensus 333 L~~L~L~iP 341 (871)
|++|.+--.
T Consensus 644 Lr~L~l~~s 652 (889)
T KOG4658|consen 644 LRVLRLPRS 652 (889)
T ss_pred ccEEEeecc
Confidence 999998844
No 114
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.88 E-value=0.014 Score=75.17 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=115.1
Q ss_pred CceEEEcChHHHHHHHHcCCcEEeCCCCCceEEEeccCCc---chHHhhhCCCCCcEEccccCC---CcccccHHHHHHH
Q 002880 539 CASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVD---EDMKTATGITDQQYVNQFPFE---SCLVMKHHLAETV 612 (871)
Q Consensus 539 ~~~kv~~d~~~V~~~L~~~gf~~~~~~~~~di~W~~~~~~---~~~~~~~~l~~~q~vN~fP~~---~~lt~K~~L~~~l 612 (871)
.++.-|.|.+.|.+..++.+. |.++-...+. .++...+....-.++. |.. ..+..|....+.+
T Consensus 55 ~~~~~Yldid~Ii~iak~~~i---------DaI~PGyGflsE~~~~a~~le~~Gi~fiG--ps~e~i~~~~DK~~ar~la 123 (1143)
T TIGR01235 55 GPIEAYLSIDEIIRVAKLNGV---------DAIHPGYGFLSENSEFADACNKAGIIFIG--PKAEVMDQLGDKVAARNLA 123 (1143)
T ss_pred CcccccCCHHHHHHHHHHhCC---------CEEEECCCccccCHHHHHHHHHcCCcccC--CCHHHHHHhcCHHHHHHHH
Confidence 456678888888888887653 3444322111 1221111110111111 221 2356777777777
Q ss_pred HHhcCCCCcccceeccCCChh---HHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-----------
Q 002880 613 QKAHGSPEWLQPTYNLETHLP---QLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME----------- 678 (871)
Q Consensus 613 ~~~~g~~~~lP~Tf~L~~el~---~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~----------- 678 (871)
+++ |- +..|-|.....+.. ++.+. -+-.+|+||..++.|+|+.++++.+++....+
T Consensus 124 ~~~-GV-Pvpp~t~~~v~~~eea~~~ae~--------iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg 193 (1143)
T TIGR01235 124 IKA-GV-PVVPGTDGPPETMEEVLDFAAA--------IGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFG 193 (1143)
T ss_pred HHc-CC-CCCCCcccCcCCHHHHHHHHHH--------cCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcC
Confidence 654 32 23333332223333 33322 23569999999999999999999887764322
Q ss_pred cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCCCCCC
Q 002880 679 TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNT 758 (871)
Q Consensus 679 ~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~ 758 (871)
.+..+||+||+.| -++.+-++.... .-.+.+| -|-|+.+. .|--...... .
T Consensus 194 ~~~vlIEefI~g~-------reIeVqVlgD~~-G~vv~l~----eRdcsvqr-----------r~qk~ie~aP----a-- 244 (1143)
T TIGR01235 194 NDEVYVEKLIERP-------RHIEVQLLGDKH-GNVVHLF----ERDCSVQR-----------RHQKVVEVAP----A-- 244 (1143)
T ss_pred CCcEEEEEcCCCC-------eEEEEEEEEeCC-CCEEEEE----eccccccc-----------cCceEEEEeC----C--
Confidence 3568999999864 256665554321 1111111 12121100 0100000000 0
Q ss_pred hhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 759 PDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 759 ~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
...-..+.++|.+++.++..++ . ......+||++|.++++|+||||..+.-.
T Consensus 245 -----------~~L~~e~r~~I~~~A~kla~aL-------g---y~G~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 245 -----------PYLSREVRDEIAEYAVKLAKAV-------N---YINAGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHHc-------C---CcceEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 0001234555666655544432 1 22356899999999999999999999643
No 115
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00064 Score=73.14 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=84.6
Q ss_pred CCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccccccc
Q 002880 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (871)
Q Consensus 182 ~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~ 261 (871)
-++-|.|.++.|-+.+.+...=..++.++.|||.+|.|+... .|+.-|.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs------eI~~ile~------------------------ 95 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS------EIGAILEQ------------------------ 95 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH------HHHHHHhc------------------------
Confidence 355678888899888887777778899999999999997764 12222222
Q ss_pred CCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 262 ~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+++|+.||||.|.++..|...-. .+.+|++|-|.|..|. |......+..+|.++.|+++
T Consensus 96 --------------lP~l~~LNls~N~L~s~I~~lp~--p~~nl~~lVLNgT~L~---w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 96 --------------LPALTTLNLSCNSLSSDIKSLPL--PLKNLRVLVLNGTGLS---WTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred --------------CccceEeeccCCcCCCccccCcc--cccceEEEEEcCCCCC---hhhhhhhhhcchhhhhhhhc
Confidence 67799999999999988764322 5789999999997665 77788888999999999887
No 116
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=96.86 E-value=0.013 Score=68.81 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=51.2
Q ss_pred cccccHHHHHHHHHhcCCCCcccce-eccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPT-YNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~T-f~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
.+..|....+.++++ |-| -.|.+ ..+.+ ++.++.+. .+-.+|+||..++.|+|+.++++.+++.+..
T Consensus 115 ~~~DK~~~r~~l~~~-GIp-~~p~~~~~v~~~~e~~~~~~~--------igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~ 184 (467)
T PRK12833 115 TMGDKARARRTARRA-GVP-TVPGSDGVVASLDAALEVAAR--------IGYPLMIKAAAGGGGRGIRVAHDAAQLAAEL 184 (467)
T ss_pred HhcCHHHHHHHHHHc-CCC-CCCCcCcCcCCHHHHHHHHHH--------hCCCEEEEECCCCCCCeEEEECCHHHHHHHH
Confidence 456788777777765 322 22222 12221 22233221 2357999999999999999999988876543
Q ss_pred -----------ccCCccccccccc
Q 002880 678 -----------ETGPKICQKYIEF 690 (871)
Q Consensus 678 -----------~~~~~IvQkYI~~ 690 (871)
..+..+||+||+.
T Consensus 185 ~~~~~~~~~~~~~~~vlvEefi~~ 208 (467)
T PRK12833 185 PLAQREAQAAFGDGGVYLERFIAR 208 (467)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCC
Confidence 1356899999985
No 117
>PRK14016 cyanophycin synthetase; Provisional
Probab=96.84 E-value=0.016 Score=71.76 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=77.3
Q ss_pred HHHHHHHcCCcEEeCCCCCceEEEeccCCcchHHhhhCCCCCcEEccccC--CCcccccHHHHHHHHHhcCCCCccccee
Q 002880 549 YVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPF--ESCLVMKHHLAETVQKAHGSPEWLQPTY 626 (871)
Q Consensus 549 ~V~~~L~~~gf~~~~~~~~~di~W~~~~~~~~~~~~~~l~~~q~vN~fP~--~~~lt~K~~L~~~l~~~~g~~~~lP~Tf 626 (871)
.|.+..++.|..... -++.++++.........-.... .++-+. ......|....+.++++ |-| +|+++
T Consensus 164 ~I~~~A~~~gi~~~~-l~~~~~v~lgyG~~~~~i~~~~------~~~~s~~a~~i~~DK~~tk~lL~~~-GIP--vP~~~ 233 (727)
T PRK14016 164 AIVDAAEARGIPYIR-LGDGSLVQLGYGKYQRRIQAAE------TDQTSAIAVDIACDKELTKRLLAAA-GVP--VPEGR 233 (727)
T ss_pred HHHHHHHHcCCCEEE-eCCCCeEecCCcHHHHHHHHhc------CCCCcHHHHHHhCCHHHHHHHHHHC-CcC--CCCee
Confidence 566667777754432 2345677665544322111111 111121 22356677666666654 432 56666
Q ss_pred ccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEE-ecChHHHHHHhc-----cCCcccccccccccccCCceee
Q 002880 627 NLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSV-TDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFD 700 (871)
Q Consensus 627 ~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v-~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFD 700 (871)
...+ ..+..+.. +.-+-..|+||..++.|+|+.+ +++.+++....+ ...++||+||. | .|
T Consensus 234 ~v~s-~~~a~~~a-----~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~------G--~d 299 (727)
T PRK14016 234 VVTS-AEDAWEAA-----EEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIVERYIP------G--KD 299 (727)
T ss_pred EeCC-HHHHHHHH-----HHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC------C--ce
Confidence 4433 22222211 1124568999999999999998 788777765432 46799999996 3 48
Q ss_pred eeEEEE
Q 002880 701 LRYIVL 706 (871)
Q Consensus 701 lR~yVL 706 (871)
+|++|+
T Consensus 300 ~Rv~Vv 305 (727)
T PRK14016 300 HRLLVV 305 (727)
T ss_pred EEEEEE
Confidence 998765
No 118
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=96.82 E-value=0.0042 Score=75.94 Aligned_cols=89 Identities=15% Similarity=0.227 Sum_probs=53.5
Q ss_pred cccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecC---hHHHHHHh--
Q 002880 603 VMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDD---LSAVIRLM-- 677 (871)
Q Consensus 603 t~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~---l~~i~~~~-- 677 (871)
..|...-+.++++ |-| +|.+..+... .+....+.. -.....++||..++.|+||.++.+ .+++.+.+
T Consensus 474 ~DK~~TK~iL~~a-GIP--VP~g~~~~~~-~~a~~~~~~----~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~ 545 (737)
T TIGR01435 474 ENKVVTKKVLAEA-GFR--VPFGDEFSSQ-ALALEAFSL----FENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNI 545 (737)
T ss_pred cCHHHHHHHHHHc-CcC--CCCEEEECCH-HHHHHHHHH----hcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHH
Confidence 3555555555544 432 5555554432 222223311 012457999999999999999876 44444322
Q ss_pred ---ccCCcccccccccccccCCceeeeeEEEEE
Q 002880 678 ---ETGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 678 ---~~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
.....|||+||+ | -|+|+.|+-
T Consensus 546 A~~~~~~VLVEefI~------G--~EyRv~VIg 570 (737)
T TIGR01435 546 AFSEDSSVIIEEFLP------G--TEYRFFVLN 570 (737)
T ss_pred HHhcCCeEEEEeccc------C--CEEEEEEEC
Confidence 235689999996 5 389998773
No 119
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00037 Score=74.28 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=69.0
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
+-.+++|.||-|.|+. +.-...|.+|++|.|..|.|.+++++ .-|.+||+|+.|||..|+-.+..+...-...+
T Consensus 40 Mp~lEVLsLSvNkIss-----L~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISS-----LAPLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred cccceeEEeecccccc-----chhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 4457777777777754 33345788999999999999998875 56899999999999999998877666777778
Q ss_pred hcCCCccccccc
Q 002880 233 QGCPKLEIYNSN 244 (871)
Q Consensus 233 ~~lp~Le~lnl~ 244 (871)
..||+|+.|++.
T Consensus 114 R~LPnLkKLDnv 125 (388)
T KOG2123|consen 114 RVLPNLKKLDNV 125 (388)
T ss_pred HHcccchhccCc
Confidence 899999988865
No 120
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00034 Score=74.17 Aligned_cols=113 Identities=23% Similarity=0.261 Sum_probs=73.8
Q ss_pred ccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccc
Q 002880 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALG 255 (871)
Q Consensus 176 l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~ 255 (871)
+...+.+|+.|++.+..++++ ..+..|++||.|.||.|.+.... ++..
T Consensus 38 l~d~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~--~l~v-------------------------- 85 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSG--GLEV-------------------------- 85 (260)
T ss_pred ccccccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccc--ccee--------------------------
Confidence 445677788888888888865 45777889999999999442211 1110
Q ss_pred ccccccCCCCCCCccccCCcCCccceeecCCcccccccc-ccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcc
Q 002880 256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334 (871)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~ 334 (871)
....+++|+.|+||+|+|+-+.. ..+. .+.+|..|++.+|...++..- =-..+.-+|+|+
T Consensus 86 ----------------l~e~~P~l~~l~ls~Nki~~lstl~pl~--~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll~~L~ 146 (260)
T KOG2739|consen 86 ----------------LAEKAPNLKVLNLSGNKIKDLSTLRPLK--ELENLKSLDLFNCSVTNLDDY-REKVFLLLPSLK 146 (260)
T ss_pred ----------------hhhhCCceeEEeecCCccccccccchhh--hhcchhhhhcccCCccccccH-HHHHHHHhhhhc
Confidence 01224678888999998875321 1122 688899999999988775421 123455578888
Q ss_pred eeEee
Q 002880 335 SLGVD 339 (871)
Q Consensus 335 ~L~L~ 339 (871)
.|+-.
T Consensus 147 ~LD~~ 151 (260)
T KOG2739|consen 147 YLDGC 151 (260)
T ss_pred ccccc
Confidence 88765
No 121
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.80 E-value=0.0014 Score=80.02 Aligned_cols=184 Identities=16% Similarity=0.202 Sum_probs=109.3
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|++++...-. .--+..+...||.|++|.++|=.+..- +......++|||..||+|+..++... ..+
T Consensus 122 ~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl~-------GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNLS-------GIS 192 (699)
T ss_pred HhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCcH-------HHh
Confidence 457788887764321 112234667889999999999888753 35677888999999999998886432 234
Q ss_pred cCCCccccccccccccccccccccccccCCCCCC-CccccCCcCCccceeecCCccccccc--cccC--CCCCCCCcceE
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPS-SLCLRDRPLQSVTSLDLSNRCIHNLV--NKAF--SPAEMPSLSHL 308 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~l~~L~~LdLS~N~I~~l~--p~~~--~~~~l~~L~~L 308 (871)
.+++|+.|-+.. ++... ........|++|+.||+|...-.... ...+ +...||+|+.|
T Consensus 193 ~LknLq~L~mrn-----------------Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 193 RLKNLQVLSMRN-----------------LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL 255 (699)
T ss_pred ccccHHHHhccC-----------------CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEE
Confidence 667766664331 11111 11123456889999999988766552 1111 12358999999
Q ss_pred eccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCCcccccCcccchhhcc
Q 002880 309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEE 372 (871)
Q Consensus 309 nLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~Ln~~~vs~~~~~ 372 (871)
|.|++.+.. +-+-.++..=|+|+.+.+-- ....-......++.||...+.+....
T Consensus 256 DcSgTdi~~---~~le~ll~sH~~L~~i~~~~------~~~~~~~~~~~i~~ln~at~~s~i~~ 310 (699)
T KOG3665|consen 256 DCSGTDINE---EILEELLNSHPNLQQIAALD------CLALSAVSSTEIRVLNTATLDSSIQA 310 (699)
T ss_pred ecCCcchhH---HHHHHHHHhCccHhhhhhhh------hhccccccccCceeeeecchhHHHHH
Confidence 999888875 22334444456655544220 00111223445566666666644433
No 122
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=96.78 E-value=0.019 Score=69.12 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=74.7
Q ss_pred CceEEecCCCCC-CCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEe-eecCcEEEEEcc
Q 002880 648 NNLWILKPWNMA-RTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVR-SMDPLEIFLSDV 720 (871)
Q Consensus 648 ~~~WIvKP~~~s-rG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvt-S~~PL~vy~y~~ 720 (871)
+-..|+||..++ .|+|+.++++.+++.+..+ +.+++|++||+ |+-=+.|.+. +.+
T Consensus 156 g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~---------~~~EisV~v~r~~~--------- 217 (577)
T PLN02948 156 GYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP---------FVKELAVMVARSRD--------- 217 (577)
T ss_pred CCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC---------CCeEEEEEEEECCC---------
Confidence 346899999765 7999999999888765443 24688999985 2222222222 111
Q ss_pred eEEEeecCCCCCCCCCc-cccccceeeeccccCCCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 002880 721 FWVRLANNPYSLDKHSF-FEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEM 798 (871)
Q Consensus 721 g~vR~a~~~y~~~~~~l-~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~ 798 (871)
|-+.+ |.... +. .+...|.+. .+. .-+++.++++++..+++.+.
T Consensus 218 G~i~~----~p~~E-~~~~~~~~~~~~----------------------~Pa~l~~~~~~~~~~~A~~~~~aL------- 263 (577)
T PLN02948 218 GSTRC----YPVVE-TIHKDNICHVVE----------------------APANVPWKVAKLATDVAEKAVGSL------- 263 (577)
T ss_pred CCEEE----ecCcc-cEEECCeeEEEE----------------------ECCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 11111 11000 00 000001100 010 01345566777766666543
Q ss_pred CCCCcEEEEeeeEEEcCCCceEEEEecCCCCC
Q 002880 799 HSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDC 830 (871)
Q Consensus 799 ~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l 830 (871)
.+...+.+||+++.++++|++|||..|.-
T Consensus 264 ---g~~Gv~~vEffv~~dG~v~v~EInpRpg~ 292 (577)
T PLN02948 264 ---EGAGVFGVELFLLKDGQILLNEVAPRPHN 292 (577)
T ss_pred ---CCCeEEEEEEEEcCCCcEEEEEEeCCCCC
Confidence 25788999999999999999999999983
No 123
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=96.73 E-value=0.015 Score=68.40 Aligned_cols=83 Identities=12% Similarity=0.017 Sum_probs=50.9
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc--
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-- 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-- 678 (871)
.+..|..+.+.++++ |-| ..|.+...-.+..+..+ +. ..-+-..|+||..++.|+|+.++++.+++.+..+
T Consensus 111 ~~~DK~~~r~~l~~~-GIp-~pp~~~~~~~~~~e~~~-~~----~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~ 183 (472)
T PRK07178 111 RMGDKTEARRAMIKA-GVP-VTPGSEGNLADLDEALA-EA----ERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRV 183 (472)
T ss_pred HhcCHHHHHHHHHHC-CCC-CCCCcCcCCCCHHHHHH-HH----HHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHH
Confidence 456788887777765 322 22222211222332221 11 1123568999999999999999999888765321
Q ss_pred ---------cCCccccccccc
Q 002880 679 ---------TGPKICQKYIEF 690 (871)
Q Consensus 679 ---------~~~~IvQkYI~~ 690 (871)
..+.++++||+.
T Consensus 184 ~~~~~~~~~~~~v~iE~~i~~ 204 (472)
T PRK07178 184 ISEATKAFGSAEVFLEKCIVN 204 (472)
T ss_pred HHHHHHhcCCCCEEEEEcCCC
Confidence 246788889865
No 124
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=96.72 E-value=0.021 Score=67.75 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=52.7
Q ss_pred cccccHHHHHHHHHhcCCCCcccceec-cCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYN-LET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~-L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
.+..|..+.+.++++ |- +..|.+.. +.+ ++.++.+. -+-.+|+||..|+.|+|+.++++.+++.+..
T Consensus 112 ~~~DK~~~k~~l~~~-GV-pv~p~~~~~v~~~~e~~~~a~~--------igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~ 181 (499)
T PRK08654 112 AMGSKINAKKLMKKA-GV-PVLPGTEEGIEDIEEAKEIAEE--------IGYPVIIKASAGGGGIGMRVVYSEEELEDAI 181 (499)
T ss_pred HhCCHHHHHHHHHHc-Cc-CCCCCcCcCCCCHHHHHHHHHH--------hCCCEEEEeCCCCCCCeEEEeCCHHHHHHHH
Confidence 567888877777765 32 22333322 221 23333322 2357999999999999999999988776543
Q ss_pred c-----------cCCccccccccc
Q 002880 678 E-----------TGPKICQKYIEF 690 (871)
Q Consensus 678 ~-----------~~~~IvQkYI~~ 690 (871)
+ .++.+||+||+.
T Consensus 182 ~~~~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 182 ESTQSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCC
Confidence 2 356899999985
No 125
>PRK12999 pyruvate carboxylase; Reviewed
Probab=96.70 E-value=0.016 Score=74.75 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=53.6
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc--
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-- 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-- 678 (871)
.+..|..+.+.++++ |- +..|.+.....+..+..+ +. ..-+-.+|+||..|+.|+|+.++++.+++....+
T Consensus 116 ~~~DK~~~r~~l~~~-GV-Pv~P~~~~~v~s~eea~~-~a----~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a 188 (1146)
T PRK12999 116 LLGDKVAARNAAIKA-GV-PVIPGSEGPIDDIEEALE-FA----EEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERA 188 (1146)
T ss_pred HhCCHHHHHHHHHHC-CC-CCCCCcccCCCCHHHHHH-HH----HHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHH
Confidence 357788877777765 32 233334323333333221 11 1123579999999999999999999887765432
Q ss_pred ---------cCCcccccccccc
Q 002880 679 ---------TGPKICQKYIEFP 691 (871)
Q Consensus 679 ---------~~~~IvQkYI~~P 691 (871)
.+++++|+||+.|
T Consensus 189 ~~ea~~~fg~~~vlVEefI~g~ 210 (1146)
T PRK12999 189 KREAKAAFGNDEVYLEKYVENP 210 (1146)
T ss_pred HHHHHhhcCCCcEEEecCCCCC
Confidence 3578999999853
No 126
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.55 E-value=0.0019 Score=68.87 Aligned_cols=107 Identities=26% Similarity=0.205 Sum_probs=69.8
Q ss_pred HHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccccc------ccccc-cc
Q 002880 103 RMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGD------DMLLS-LN 175 (871)
Q Consensus 103 rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d------~~l~~-~~ 175 (871)
-|..+..+|+++|+=-+| ..+-|.+|++. ...++..++++.-.+- ..+.. +.
T Consensus 28 ~~d~~~evdLSGNtigtE----------------A~e~l~~~ia~-----~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~ 86 (388)
T COG5238 28 MMDELVEVDLSGNTIGTE----------------AMEELCNVIAN-----VRNLRVVNFSDAFTGRDKDELYSNLVMLLK 86 (388)
T ss_pred hhcceeEEeccCCcccHH----------------HHHHHHHHHhh-----hcceeEeehhhhhhcccHHHHHHHHHHHHH
Confidence 377777889999853222 22345555544 2347777777763322 11111 23
Q ss_pred ccccCCCCcEeeccCCccc--cHHHHHHHHhcCCCCCeeeCCCCcccccccccchhH
Q 002880 176 LSSKFPDLQALSLCGNKLE--TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230 (871)
Q Consensus 176 l~~~~p~L~~L~Ls~N~L~--~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~ 230 (871)
...+||.|+..+||.|-+. .++....-+++-++|++|-|++|-+.....+.+.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigka 143 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA 143 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHH
Confidence 4578999999999999886 345566778899999999999998854443344433
No 127
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=96.49 E-value=0.08 Score=61.74 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=46.7
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEec----ChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTD----DLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~----~l~~i~~~ 676 (871)
.-++|..+.+.|+++ |-+ .|++|..-....+....+. . ..-..|+||..++.|+|+.++. +.++....
T Consensus 102 ~e~dK~~~k~~l~~~-gIp--tp~~~~~~~~~~e~~~~~~---~--~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~ 173 (435)
T PRK06395 102 IETSKMFMRYLMERH-NIP--GNINFNACFSEKDAARDYI---T--SMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRY 173 (435)
T ss_pred HhhCHHHHHHHHHHC-CcC--CCcccceeCChHHHHHHHH---h--hCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHH
Confidence 456677777777764 321 2345533222222222221 1 1245899999999999999984 33443221
Q ss_pred h-----ccCCcccccccc
Q 002880 677 M-----ETGPKICQKYIE 689 (871)
Q Consensus 677 ~-----~~~~~IvQkYI~ 689 (871)
. ..++.|||+||+
T Consensus 174 ~~~~~~~~~~viIEEfl~ 191 (435)
T PRK06395 174 AIEILDRDGVVLIEKKMT 191 (435)
T ss_pred HHHHhCCCCcEEEEeecC
Confidence 1 135689999997
No 128
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=96.47 E-value=0.06 Score=60.23 Aligned_cols=84 Identities=17% Similarity=0.081 Sum_probs=57.9
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEec-ChHHHHHHhc-
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTD-DLSAVIRLME- 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~-~l~~i~~~~~- 678 (871)
.+-.|..+++.+++. |- -+|+++... ...+|.+.|.. -...+...++||..|..|+|-.+++ +.+.+..+.+
T Consensus 104 ~~~dK~~~y~~~~~~-~i--pvp~~~~v~-t~~el~~a~~~--l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~ 177 (329)
T PF15632_consen 104 LADDKAAFYEFMEAN-GI--PVPPYWRVR-TADELKAAYEE--LRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEP 177 (329)
T ss_pred HHhhHHHHHHHHHhC-CC--CCCCEEEeC-CHHHHHHHHHh--cCCCCceEEEecccCCCcceEEEEccCcchHHHhcCC
Confidence 567899999998874 21 467777654 35666655532 2344677999999999999999998 5555444332
Q ss_pred -------------------cCCccccccccc
Q 002880 679 -------------------TGPKICQKYIEF 690 (871)
Q Consensus 679 -------------------~~~~IvQkYI~~ 690 (871)
-.+.+|+.|++-
T Consensus 178 ~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G 208 (329)
T PF15632_consen 178 DSRRISLDELLAALQRSEEFPPLLVMEYLPG 208 (329)
T ss_pred CcceeCHHHHHHHHhccCCCCCcEEecCCCC
Confidence 246788888873
No 129
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.45 E-value=0.0018 Score=75.14 Aligned_cols=94 Identities=23% Similarity=0.076 Sum_probs=50.9
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
.+.+.+..+.-.........+...+|+|+.|.++++.-..-..+......+++|+.|+|+++.......+.....+...|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 242 (482)
T KOG1947|consen 163 LESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSIC 242 (482)
T ss_pred HheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhc
Confidence 34444444433322233333455589999999888843322235567888899999999874221111112222344555
Q ss_pred CCcccccccccccc
Q 002880 236 PKLEIYNSNFTINF 249 (871)
Q Consensus 236 p~Le~lnl~~t~~~ 249 (871)
++|+.+++..++..
T Consensus 243 ~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLV 256 (482)
T ss_pred CCcCccchhhhhcc
Confidence 66555555555443
No 130
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.40 E-value=0.0091 Score=63.80 Aligned_cols=145 Identities=15% Similarity=0.215 Sum_probs=91.1
Q ss_pred CCceeEEeeccccccccccccc-cccccCCCCcEeeccCCccc--------cHHHHHHHHhcCCCCCeeeCCCCcccccc
Q 002880 153 DGTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLE--------TVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~-~l~~~~p~L~~L~Ls~N~L~--------~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~ 223 (871)
++++..++||+|.|+......+ .+.++-.+|+..++|.--.. ++.-..+++-+||+|+..+||+|-+...-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5778999999999998444332 34555677888887765443 22233467789999999999999884322
Q ss_pred cccchhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCC-----
Q 002880 224 DHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS----- 298 (871)
Q Consensus 224 ~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~----- 298 (871)
++.+..-+ ..-+.|..|-|+||++.-+-+..++
T Consensus 109 ----~e~L~d~i--------------------------------------s~~t~l~HL~l~NnGlGp~aG~rigkal~~ 146 (388)
T COG5238 109 ----PEELGDLI--------------------------------------SSSTDLVHLKLNNNGLGPIAGGRIGKALFH 146 (388)
T ss_pred ----chHHHHHH--------------------------------------hcCCCceeEEeecCCCCccchhHHHHHHHH
Confidence 22211111 1144577777777776554333222
Q ss_pred ------CCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 299 ------PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 299 ------~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
...-|.|++.....|++.+-+-.-....+.+=.+|+.+.+.
T Consensus 147 la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~ 193 (388)
T COG5238 147 LAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQ 193 (388)
T ss_pred HHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEee
Confidence 12457788888888888775544334444444577777776
No 131
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.28 E-value=0.0032 Score=76.99 Aligned_cols=158 Identities=20% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccc
Q 002880 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (871)
Q Consensus 181 p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~ 260 (871)
.+|+.|+++|...-+-+-+-..-..||+|++|.+++=.+...+ ...++.+||+|..||.+-|+-....
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d----F~~lc~sFpNL~sLDIS~TnI~nl~-------- 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD----FSQLCASFPNLRSLDISGTNISNLS-------- 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh----HHHHhhccCccceeecCCCCccCcH--------
Confidence 5778888888766544444444455778888877776554332 2344566777666666655433221
Q ss_pred cCCCCCCCccccCCcCCccceeecCCcccccccc--ccCCCCCCCCcceEeccCCCCCCcc--hHHHHHHhcCCCCccee
Q 002880 261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN--KAFSPAEMPSLSHLNIRGNPLEQNS--VRELLEVLKGFPCLQSL 336 (871)
Q Consensus 261 ~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p--~~~~~~~l~~L~~LnLs~N~L~~l~--~~~i~~~l~~lp~L~~L 336 (871)
|...|++|+.|.+-+=.+..... ..| .|++|+.||+|.......+ .....+.-..||+|+.|
T Consensus 190 -----------GIS~LknLq~L~mrnLe~e~~~~l~~LF---~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 190 -----------GISRLKNLQVLSMRNLEFESYQDLIDLF---NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL 255 (699)
T ss_pred -----------HHhccccHHHHhccCCCCCchhhHHHHh---cccCCCeeeccccccccchHHHHHHHHhcccCccccEE
Confidence 22225555555554444433211 112 4667777777666665533 11112333446666666
Q ss_pred EeeCCCCCCchhhHHhhhCCCcccccCc
Q 002880 337 GVDIPGPLGESAIEILESLPTLCTLNGV 364 (871)
Q Consensus 337 ~L~iP~~l~~~~~~Il~~L~~L~~Ln~~ 364 (871)
+++.-.--.+....++.+=|+|+.+...
T Consensus 256 DcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 256 DCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 6661100001113444455555555544
No 132
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=96.27 E-value=0.025 Score=69.98 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=54.2
Q ss_pred cccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEec---ChHHHHHHhc-
Q 002880 603 VMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTD---DLSAVIRLME- 678 (871)
Q Consensus 603 t~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~---~l~~i~~~~~- 678 (871)
..|....+.++++ |-| .|.+..+.+ ..+....+. .-.+-..|+||..++.|+||.+++ +.+++.+.++
T Consensus 487 ~DK~~tk~lL~~~-GIp--vP~~~~~~~-~e~a~~~~~----~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~ 558 (752)
T PRK02471 487 ENKVVTKKILAEA-GFP--VPAGDEFTS-LEEALADYS----LFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEI 558 (752)
T ss_pred hCHHHHHHHHHHC-CcC--CCCEEEEcC-HHHHHHHHH----HhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHH
Confidence 3666666666554 432 466655433 233333221 101346899999999999999875 4555544332
Q ss_pred ----cCCcccccccccccccCCceeeeeEEEE
Q 002880 679 ----TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 679 ----~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
....+||+||. |+ |+|+.|+
T Consensus 559 a~~~~~~vlVEEfI~------G~--E~Rv~Vi 582 (752)
T PRK02471 559 AFREDSSVLVEEFIV------GT--EYRFFVL 582 (752)
T ss_pred HHhcCCcEEEEeccc------CC--EEEEEEE
Confidence 35689999995 44 8898776
No 133
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=96.23 E-value=0.083 Score=54.67 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHHHHH-HHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCC
Q 002880 776 IHQRVKN-TIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCP 828 (871)
Q Consensus 776 I~~~I~~-~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P 828 (871)
+.+.|.+ ++.-++.+++.. .-..+.++.+.+|+..++ |++||.|...
T Consensus 142 ~~~~i~~~I~~pt~~~l~~e-----g~~y~GvLy~glMlt~~G-p~vlEfN~Rf 189 (194)
T PF01071_consen 142 LLEEIIEEILEPTLKGLKKE-----GIPYRGVLYAGLMLTEDG-PKVLEFNVRF 189 (194)
T ss_dssp HHHHHHHHTHHHHHHHHHHT-----T---EEEEEEEEEEETTE-EEEEEEESSG
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCcceeeeeeeEEeCCC-cEEEEEeCCC
Confidence 3334443 555566666542 123578999999999887 9999999864
No 134
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.08 E-value=0.0098 Score=66.93 Aligned_cols=190 Identities=18% Similarity=0.113 Sum_probs=106.3
Q ss_pred CCCceeEEeeccc-cccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhH
Q 002880 152 GDGTVKWLELEDA-DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230 (871)
Q Consensus 152 ~~~~l~~L~L~~~-~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~ 230 (871)
+...+..++|..| .|+|.++. .++..|..|+.|..++..-.+-..+-..-.++++|+.|-|+.++--+.- -...
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~--~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---~ft~ 340 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLW--LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---GFTM 340 (483)
T ss_pred cChHhhccchhhhccccchHHH--HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---hhhh
Confidence 3444566666666 35554422 2456677777777776654333333333446677777777776532111 1233
Q ss_pred HhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcccccccc-ccCC--CCCCCCcce
Q 002880 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFS--PAEMPSLSH 307 (871)
Q Consensus 231 i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~--~~~l~~L~~ 307 (871)
+..+++.|+-+++--++...... +..-..+++.|+.|.||.|......+ ..+. ...+..|+.
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~t---------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGT---------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV 405 (483)
T ss_pred hhcCChhhhhhcccccceehhhh---------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence 44566666666654443321111 11122446778888888777665532 1111 125778888
Q ss_pred EeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchh-hHHhhhCCCcccccCc
Q 002880 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA-IEILESLPTLCTLNGV 364 (871)
Q Consensus 308 LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~-~~Il~~L~~L~~Ln~~ 364 (871)
|-|+++++.. +.....+..|++|+.+++--.+.+.... ...-.+||+++...-+
T Consensus 406 lEL~n~p~i~---d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 406 LELDNCPLIT---DATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred eeecCCCCch---HHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 8888888773 5667778888888887666333333333 2333477777654433
No 135
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.06 E-value=0.13 Score=66.68 Aligned_cols=85 Identities=12% Similarity=0.189 Sum_probs=55.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
+..|..+.+.+++. |- -.|+++...+ ++.++.. ..+-.+|+||..+..|+|+.++.+.+++.+.++
T Consensus 668 ~~DK~~f~~ll~~~-GI--p~P~~~~~~s~ee~~~~~~--------~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~ 736 (1068)
T PRK12815 668 LEDRDRFYQLLDEL-GL--PHVPGLTATDEEEAFAFAK--------RIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAE 736 (1068)
T ss_pred HcCHHHHHHHHHHc-Cc--CCCCeEEeCCHHHHHHHHH--------hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHH
Confidence 45566666666553 21 2455554432 2222322 224679999999999999999999888776543
Q ss_pred ----cCCcccccccccccccCCceeeeeE
Q 002880 679 ----TGPKICQKYIEFPALFQGRKFDLRY 703 (871)
Q Consensus 679 ----~~~~IvQkYI~~PlLi~grKFDlR~ 703 (871)
..+++||+||+ |+.+++-+
T Consensus 737 ~~s~~~~vlIeefI~------G~E~~Vd~ 759 (1068)
T PRK12815 737 NASQLYPILIDQFID------GKEYEVDA 759 (1068)
T ss_pred hhcCCCCEEEEEeec------CceEEEEE
Confidence 46799999995 55566554
No 136
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.05 E-value=0.0035 Score=78.60 Aligned_cols=130 Identities=21% Similarity=0.226 Sum_probs=83.2
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
+..|-+..+.. .....+.+....+|.|..|||++|. +...+|..++.|-+|+.|+|++..+.... .
T Consensus 547 L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~I~~LP---------~-- 612 (889)
T KOG4658|consen 547 LRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTGISHLP---------S-- 612 (889)
T ss_pred cceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCCccccc---------h--
Confidence 56666666542 1112333446678999999999974 34567889999999999999999883221 1
Q ss_pred CCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
+...|..|.+|||..+.-...+|.... .+++|++|.|..-..
T Consensus 613 ------------------------------------~l~~Lk~L~~Lnl~~~~~l~~~~~i~~--~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 613 ------------------------------------GLGNLKKLIYLNLEVTGRLESIPGILL--ELQSLRVLRLPRSAL 654 (889)
T ss_pred ------------------------------------HHHHHHhhheeccccccccccccchhh--hcccccEEEeecccc
Confidence 112255666777776665555454444 588888888877653
Q ss_pred CCcchHHHHHHhcCCCCcceeEee
Q 002880 316 EQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 316 ~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.. ...+...+.++.+|+.|...
T Consensus 655 ~~--~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 655 SN--DKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cc--chhhHHhhhcccchhhheee
Confidence 32 22334445666666666655
No 137
>PLN02735 carbamoyl-phosphate synthase
Probab=95.98 E-value=0.069 Score=68.99 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=35.0
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-------cCCccccccccc
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-------TGPKICQKYIEF 690 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-------~~~~IvQkYI~~ 690 (871)
+-..|+||..+..|+|+.++.+.+++.+.++ .++.+||+||+.
T Consensus 737 GyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~ 786 (1102)
T PLN02735 737 GYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD 786 (1102)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 3568999999999999999999888765432 246899999974
No 138
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.009 Score=66.87 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=43.3
Q ss_pred eEEEEecCC-C--CCCCc--------EEEEEeeeeccchHHHHHHh-----hChhHHHHHHhhhccc
Q 002880 61 RRLVLDSQS-M--PKESN--------VFLVDHAWTFRLSDAFSQLQ-----EVPGLAQRMASLMCVD 111 (871)
Q Consensus 61 ~~~~~~~~~-~--~~~~~--------iflidhawt~~~~~~~~ql~-----~~p~L~~rl~~l~~i~ 111 (871)
+++.+++|+ . -.|+. ||+|||+||-+.++++++|+ ++++++.||++|||.+
T Consensus 81 ~~~s~~~ESa~~c~~pn~gl~~~~~~iFgiD~~~t~~vd~t~~~le~~v~~e~~e~l~~~s~l~G~~ 147 (631)
T KOG2155|consen 81 HFMSFSSESARKCVEPNEGLVERLAGIFGIDTDSTEEVDETVEKLETSVEKEEAEHLKKISSLTGNL 147 (631)
T ss_pred eeeeeehhhhhcccCCCccHHHhhccccccCCccceeccHHHHHhhccchhhHHHHHHHHHHhhCCC
Confidence 567777773 3 23444 99999999999999999999 9999999999999964
No 139
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.69 E-value=0.18 Score=65.42 Aligned_cols=77 Identities=9% Similarity=0.115 Sum_probs=51.3
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|..+.+.++++ |-| .|+++.+.+ ++.++.+. -+-..|+||..+..|+|+.++++.+++.+...
T Consensus 126 ~~DK~~~k~~l~~~-Gip--vp~~~~v~s~~e~~~~~~~--------ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~ 194 (1066)
T PRK05294 126 AEDRELFKEAMKKI-GLP--VPRSGIAHSMEEALEVAEE--------IGYPVIIRPSFTLGGTGGGIAYNEEELEEIVER 194 (1066)
T ss_pred hcCHHHHHHHHHHC-CcC--CCCeeeeCCHHHHHHHHHH--------cCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHH
Confidence 34666666666554 432 466665543 23333322 23468999999999999999999888765443
Q ss_pred ------cCCcccccccc
Q 002880 679 ------TGPKICQKYIE 689 (871)
Q Consensus 679 ------~~~~IvQkYI~ 689 (871)
.++++||+||.
T Consensus 195 ~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 195 GLDLSPVTEVLIEESLL 211 (1066)
T ss_pred HHhhCCCCeEEEEEccc
Confidence 25789999997
No 140
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.69 E-value=0.016 Score=66.24 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=34.2
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccC-CccccHHHHHHHHhcCCCCCeeeCCCC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCG-NKLETVEIIVQEVTKLKNLRALWLNNN 217 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~-N~L~~~~~i~~~l~~L~~Lk~L~Ls~N 217 (871)
+..|++++|.|...... -++|++|.+++ ++|+.+ |..+. ++|+.|+|++|
T Consensus 54 l~~L~Is~c~L~sLP~L-------P~sLtsL~Lsnc~nLtsL---P~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 54 SGRLYIKDCDIESLPVL-------PNELTEITIENCNNLTTL---PGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCEEEeCCCCCcccCCC-------CCCCcEEEccCCCCcccC---Cchhh--hhhhheEccCc
Confidence 67899999987763311 14699999987 455543 33332 58899999988
No 141
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.66 E-value=0.27 Score=64.10 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=51.7
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc--
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-- 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-- 678 (871)
.+..|...-+.++++ |- +..|.++.+.+ ..+..+ +. ..-+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 111 ~~~DK~~ar~ll~~~-GV-Pt~p~~~lv~s-~dea~~-~a----~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~ 182 (1201)
T TIGR02712 111 KFGLKHTARELAEAA-GV-PLLPGTGLLSS-LDEALE-AA----KEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETV 182 (1201)
T ss_pred HhcCHHHHHHHHHHC-CC-CCCCceeecCC-HHHHHH-HH----HhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHH
Confidence 466777666666654 32 23344544432 222221 11 1124679999999999999999999888764332
Q ss_pred ---------cCCccccccccc
Q 002880 679 ---------TGPKICQKYIEF 690 (871)
Q Consensus 679 ---------~~~~IvQkYI~~ 690 (871)
....+||+||+.
T Consensus 183 ~~~~~~~f~~~~vlVEefI~g 203 (1201)
T TIGR02712 183 KRLGESFFGDAGVFLERFVEN 203 (1201)
T ss_pred HHHHHHhcCCCcEEEEecCCC
Confidence 245899999974
No 142
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.60 E-value=0.011 Score=68.63 Aligned_cols=63 Identities=32% Similarity=0.366 Sum_probs=36.7
Q ss_pred ceeEEeecccc-ccccccccccccccCCCCcEeeccCCc-cccHHHHHHHHhcCCCCCeeeCCCCccc
Q 002880 155 TVKWLELEDAD-IGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNNNPVL 220 (871)
Q Consensus 155 ~l~~L~L~~~~-i~d~~l~~~~l~~~~p~L~~L~Ls~N~-L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~ 220 (871)
.+++|+|+.++ ++|.++.. ++..||+|+.|.+.++. +++ ..+.....+|++|+.|+|+.+...
T Consensus 244 ~L~~l~l~~~~~isd~~l~~--l~~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 244 KLKSLDLSGCGLVTDIGLSA--LASRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CcCccchhhhhccCchhHHH--HHhhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCccc
Confidence 35666666665 66555444 33446666666655555 343 344556666666777766666554
No 143
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=95.43 E-value=0.6 Score=55.27 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCC
Q 002880 777 HQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPD 829 (871)
Q Consensus 777 ~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~ 829 (871)
.+.+.+++..++.++..... ......+-++||++++..|++||+|..+.
T Consensus 263 ~~~~~~~v~~~l~al~~~~g----~~~~G~l~~elmlt~~~GP~vIE~n~R~G 311 (486)
T PRK05784 263 YEEAVEIVKRTIDAIYKETG----ERYVGVISGQMMLTELWGPTVIEYYSRFG 311 (486)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCcEEEEEEEEEEecCCCcEEEEEecccC
Confidence 33444566666666653211 11246778899998334499999998776
No 144
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.21 E-value=0.017 Score=67.08 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=51.4
Q ss_pred CcchhhHHHhhhcccccCCCCceeEEeecccccccc---------------cccccc-ccccCCCCcEeeccCCccccHH
Q 002880 134 KSNVEDILESEIHNATEKGDGTVKWLELEDADIGDD---------------MLLSLN-LSSKFPDLQALSLCGNKLETVE 197 (871)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~---------------~l~~~~-l~~~~p~L~~L~Ls~N~L~~~~ 197 (871)
++-+.+++.++.--+ -+.|||++...+.. |...+. ...++|.+.+|+|++|+|.+++
T Consensus 162 IE~l~~v~~kRyd~~-------~~~LDL~nl~~DPel~~~di~~~l~~rn~M~~~L~~~~~n~p~i~sl~lsnNrL~~Ld 234 (585)
T KOG3763|consen 162 IEILKLVMNKRYDVS-------QQALDLQNLRFDPELVNRDILMVLNKRNCMAAVLKHIEENFPEILSLSLSNNRLYHLD 234 (585)
T ss_pred HHHHHHHHhccccHH-------HhhhhhhccccChhhhhccchhhcccchhhHHHHHHhhcCCcceeeeecccchhhchh
Confidence 455555555554222 24577777765541 122222 3457888999999999998888
Q ss_pred HHHHHHhcCCCCCeeeCCCC
Q 002880 198 IIVQEVTKLKNLRALWLNNN 217 (871)
Q Consensus 198 ~i~~~l~~L~~Lk~L~Ls~N 217 (871)
.+...-..-|+|+.|+||+|
T Consensus 235 ~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 235 ALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hhhHHHHhcchhheeecccc
Confidence 87777777788888888888
No 145
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.12 E-value=0.017 Score=66.02 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=26.5
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCC-CCCeeeCCCCcc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLK-NLRALWLNNNPV 219 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~-~Lk~L~Ls~N~l 219 (871)
..|+++..|++++|.|++++ .+| +|+.|.++++.-
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP-------~LP~sLtsL~Lsnc~n 84 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP-------VLPNELTEITIENCNN 84 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC-------CCCCCCcEEEccCCCC
Confidence 34689999999999888653 243 699999988433
No 146
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=95.06 E-value=0.44 Score=61.67 Aligned_cols=79 Identities=9% Similarity=0.143 Sum_probs=49.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc---
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME--- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~--- 678 (871)
...|..+.+.+++. |-| .|++..+.+ ..+..+.. +.-+-..|+||..+..|+|+.++++.+++.....
T Consensus 125 ~~DK~~~k~~l~~~-Gip--vp~~~~v~s-~~e~~~~~-----~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~ 195 (1050)
T TIGR01369 125 AEDRELFREAMKEI-GEP--VPESEIAHS-VEEALAAA-----KEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERAL 195 (1050)
T ss_pred hCCHHHHHHHHHHC-CCC--CCCeeecCC-HHHHHHHH-----HHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHH
Confidence 35566666666554 322 355555443 22222111 1123468999999999999999999888765421
Q ss_pred ----cCCcccccccc
Q 002880 679 ----TGPKICQKYIE 689 (871)
Q Consensus 679 ----~~~~IvQkYI~ 689 (871)
.++++||+||.
T Consensus 196 ~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 196 SASPINQVLVEKSLA 210 (1050)
T ss_pred hcCCCCcEEEEEccc
Confidence 15789999997
No 147
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=94.93 E-value=0.28 Score=63.56 Aligned_cols=77 Identities=9% Similarity=0.147 Sum_probs=51.0
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|..+.+.++++ |-| .|+++.+.+ ++.++.+. -+-..|+||..+..|+|..++++.+++.+...
T Consensus 126 ~~DK~~~k~~l~~~-GIp--vp~~~~v~s~ee~~~~~~~--------igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~ 194 (1068)
T PRK12815 126 GEDRERFRALMKEL-GEP--VPESEIVTSVEEALAFAEK--------IGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQ 194 (1068)
T ss_pred hcCHHHHHHHHHHc-CcC--CCCceeeCCHHHHHHHHHH--------cCCCEEEEECcCCCCCceEEECCHHHHHHHHHH
Confidence 45666666666554 433 466666543 22233222 23468999999999999999999888766542
Q ss_pred ------cCCcccccccc
Q 002880 679 ------TGPKICQKYIE 689 (871)
Q Consensus 679 ------~~~~IvQkYI~ 689 (871)
.++++||+||.
T Consensus 195 ~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 195 GLQASPIHQCLLEESIA 211 (1068)
T ss_pred HHhcCCCCeEEEEEccC
Confidence 24689999997
No 148
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=94.61 E-value=0.42 Score=55.66 Aligned_cols=83 Identities=14% Similarity=0.042 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc---
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME--- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~--- 678 (871)
+..|....+.++++ | .+..|-+.-...+..++.+.- +.-+-..|+||+.|+.|+||+++++.+++.+..+
T Consensus 113 mgdK~~ar~~~~~a-G-VP~vpgs~~~~~~~ee~~~~a-----~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~ 185 (449)
T COG0439 113 MGDKITARRLMAKA-G-VPVVPGSDGAVADNEEALAIA-----EEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAAR 185 (449)
T ss_pred hhhHHHHHHHHHHc-C-CCcCCCCCCCcCCHHHHHHHH-----HHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHH
Confidence 45667777777665 3 345555532222333443321 1122678999999999999999999988776442
Q ss_pred --------cCCcccccccccc
Q 002880 679 --------TGPKICQKYIEFP 691 (871)
Q Consensus 679 --------~~~~IvQkYI~~P 691 (871)
++..+++|||++|
T Consensus 186 ~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 186 GEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred HHHHHhcCCCcEEeeeeccCC
Confidence 3458999999986
No 149
>PLN02735 carbamoyl-phosphate synthase
Probab=94.58 E-value=0.27 Score=63.75 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=33.3
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc-------cCCcccccccc
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME-------TGPKICQKYIE 689 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-------~~~~IvQkYI~ 689 (871)
-..|+||..++.|+|+.++.+.+++.+... .++.+|++||.
T Consensus 181 yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~ 228 (1102)
T PLN02735 181 FPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL 228 (1102)
T ss_pred CCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 357999999999999999999888776543 24678888887
No 150
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=94.33 E-value=0.051 Score=50.11 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=36.9
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccc
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDF 479 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~ 479 (871)
-+++.|+||-.||+++..... ++ ...-.++-++||++|||+|-||
T Consensus 72 ~~~~~iNHsc~pN~~~~~~~~--~~-----~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 72 NIARFINHSCEPNCELLFVEV--NG-----DSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred cHHHeeCCCCCCCEEEEEEEE--CC-----CcEEEEEECCCcCCCCEEeecC
Confidence 478999999999999876554 33 2266778899999999999987
No 151
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=93.00 E-value=1 Score=49.96 Aligned_cols=195 Identities=13% Similarity=0.218 Sum_probs=81.7
Q ss_pred CCCcccccHHHHHHHHHh---cCC-CCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCC---CCCcEEEecCh
Q 002880 598 FESCLVMKHHLAETVQKA---HGS-PEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMA---RTIDTSVTDDL 670 (871)
Q Consensus 598 ~~~~lt~K~~L~~~l~~~---~g~-~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~s---rG~GI~v~~~l 670 (871)
....|.++..+.+.+++. .+. .=..|..-.+.++..+..+. .+..+..-..|+||...+ ....+.++-+.
T Consensus 87 ~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~---l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~ 163 (307)
T PF05770_consen 87 AIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPEL---LKEAGLKFPLICKPLVACGSADSHKMAIVFNE 163 (307)
T ss_dssp HHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHH---HHCTTS-SSEEEEESB-SSTSCCCEEEEE-SG
T ss_pred HHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHH---HHHCCCcccEEeeehhhcCCccceEEEEEECH
Confidence 333445555555555442 122 22467766666442222221 235677788999997532 33467777666
Q ss_pred HHHHHHhccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccc
Q 002880 671 SAVIRLMETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYG 750 (871)
Q Consensus 671 ~~i~~~~~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~ 750 (871)
+.+.++ ..|.|+|+||.. +|+= +.+||+-. .++ ...|.+...+.... .+.....|.-.+.+
T Consensus 164 ~gL~~L--~~P~VlQeFVNH----ggvL--fKVyVvGd-----~v~----~v~R~SLpn~~~~~--~~~~~~~f~~~~vs 224 (307)
T PF05770_consen 164 EGLKDL--KPPCVLQEFVNH----GGVL--FKVYVVGD-----KVF----VVKRPSLPNVSSGK--LDREEIFFDFHQVS 224 (307)
T ss_dssp GGGTT----SSEEEEE--------TTEE--EEEEEETT-----EEE----EEEEE------SSS---TCGGCCCEGGGTC
T ss_pred HHHhhc--CCCEEEEEeecC----CCEE--EEEEEecC-----EEE----EEECCCCCCCCccc--ccccccceeccccC
Confidence 555443 468999999996 3432 34555522 122 13455555554432 11111222111111
Q ss_pred cCCCCCCChhhHHHHH---HhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCC--CceEEEEec
Q 002880 751 RRFNHMNTPDFVRGFE---AEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSS--FQPKLLEVT 825 (871)
Q Consensus 751 ~~~~~~~~~df~~~~~---~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~--~kpwLLEVN 825 (871)
. ..+..-...+. ......-..+..++.+.+++.+ .-.+||||+++++. ++.++|.||
T Consensus 225 ~----~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~l--------------gL~LFgfDvI~~~~t~~~~~VIDIN 286 (307)
T PF05770_consen 225 K----LESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRAL--------------GLTLFGFDVIRENGTGGRYYVIDIN 286 (307)
T ss_dssp S----TTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHH--------------T-SEEEEEEEEGCCT-SSEEEEEEE
T ss_pred C----ccccCchhhcccCcccccCCCHHHHHHHHHHHHHHh--------------CcceeeeEEEEEcCCCCcEEEEEec
Confidence 1 00000000000 0000111122222222222111 25699999999974 689999999
Q ss_pred CCCCCCc
Q 002880 826 YCPDCTR 832 (871)
Q Consensus 826 ~~P~l~~ 832 (871)
..|+...
T Consensus 287 yFPgY~~ 293 (307)
T PF05770_consen 287 YFPGYKK 293 (307)
T ss_dssp ES--TTT
T ss_pred cCCCccC
Confidence 9999865
No 152
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=92.92 E-value=0.12 Score=59.99 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=46.8
Q ss_pred CcccceeccCC----------ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecCh-----HHHHHHhccCCccc
Q 002880 620 EWLQPTYNLET----------HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDL-----SAVIRLMETGPKIC 684 (871)
Q Consensus 620 ~~lP~Tf~L~~----------el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l-----~~i~~~~~~~~~Iv 684 (871)
.++|.|..+.. ++.+|+.. ....||+||..+..|+|+.+=... +++++..-.++||+
T Consensus 308 ~HvP~T~~l~~~~~~~~g~~~dL~~~~~a--------~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~yil 379 (445)
T PF14403_consen 308 RHVPWTRLLTAGRTTYQGEDVDLVEFAIA--------NRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAREPYIL 379 (445)
T ss_pred HhCCceEEEcCccccccccchhHHHHHHh--------chhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcCCcEE
Confidence 48999999976 44444332 347899999999999999986542 23444333579999
Q ss_pred ccccccc
Q 002880 685 QKYIEFP 691 (871)
Q Consensus 685 QkYI~~P 691 (871)
|+|+.-+
T Consensus 380 Qe~v~~~ 386 (445)
T PF14403_consen 380 QEYVRPP 386 (445)
T ss_pred EEEecCC
Confidence 9999854
No 153
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.72 E-value=0.0078 Score=70.66 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=91.3
Q ss_pred eeEEeecccccccccccccc-ccccCCCCcEeeccCCccccHH--HHHHHHhcC-CCCCeeeCCCCcccccccccchhHH
Q 002880 156 VKWLELEDADIGDDMLLSLN-LSSKFPDLQALSLCGNKLETVE--IIVQEVTKL-KNLRALWLNNNPVLKKCDHCMEDAI 231 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~-l~~~~p~L~~L~Ls~N~L~~~~--~i~~~l~~L-~~Lk~L~Ls~N~l~~~~~~~~~~~i 231 (871)
+..|.|..|.+.+.....+. .....+.|+.|+|++|.+...+ .+.+.+... ..|+.|++..|.++....+.+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56777888888885444432 3456788888888888887322 222333333 4567788888888766544444444
Q ss_pred hhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcccccccc----ccCCCCCCCC-cc
Q 002880 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN----KAFSPAEMPS-LS 306 (871)
Q Consensus 232 ~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p----~~~~~~~l~~-L~ 306 (871)
.. .+.|+.+++..++......+..|..+.. ......++++|+|++|.++...= ..+. ..++ +.
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~---------~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~--~~~~~~~ 236 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALES---------AASPLSSLETLKLSRCGVTSSSCALLDEVLA--SGESLLR 236 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhh---------hhcccccHHHHhhhhcCcChHHHHHHHHHHh--ccchhhH
Confidence 44 6666667666555432222222222211 01124455666666666552210 1111 2333 44
Q ss_pred eEeccCCCCCCcchHHHHHHhcCC-CCcceeEee
Q 002880 307 HLNIRGNPLEQNSVRELLEVLKGF-PCLQSLGVD 339 (871)
Q Consensus 307 ~LnLs~N~L~~l~~~~i~~~l~~l-p~L~~L~L~ 339 (871)
.|++..|.+.+.....+...+..+ +.|+.|++.
T Consensus 237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 466666666544344444444444 555555555
No 154
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.52 E-value=0.17 Score=47.73 Aligned_cols=38 Identities=11% Similarity=0.268 Sum_probs=17.9
Q ss_pred cccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCC
Q 002880 177 SSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217 (871)
Q Consensus 177 ~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N 217 (871)
...|++|+.+.+.. .+..++. ..+..+++|+.+.+.++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~--~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGE--NAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-T--TTTTT-TT-SEEEESST
T ss_pred HhCCCCCCEEEECC-CeeEeCh--hhccccccccccccccc
Confidence 34566677777663 4444432 45666667777777665
No 155
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=92.39 E-value=0.092 Score=61.28 Aligned_cols=85 Identities=28% Similarity=0.259 Sum_probs=61.9
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCC--ccccHHHHHHHHhcC--CCCCeeeCCCCcccccc--ccc
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN--KLETVEIIVQEVTKL--KNLRALWLNNNPVLKKC--DHC 226 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N--~L~~~~~i~~~l~~L--~~Lk~L~Ls~N~l~~~~--~~~ 226 (871)
...+..+.|++|.|....-.+ .++...|+|..|+|++| .+++..+ +.++ ..|+.|+|.+|+|+..- ...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~s-slsq~apklk~L~LS~N~~~~~~~~e----l~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALS-SLSQIAPKLKTLDLSHNHSKISSESE----LDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred Ccceeeeecccchhhchhhhh-HHHHhcchhheeecccchhhhcchhh----hhhhcCCCHHHeeecCCccccchhhhHH
Confidence 345788889999887632222 27789999999999999 7765444 4444 46889999999998643 334
Q ss_pred chhHHhhcCCCccccc
Q 002880 227 MEDAILQGCPKLEIYN 242 (871)
Q Consensus 227 ~~~~i~~~lp~Le~ln 242 (871)
....|...||+|..|+
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 5667778899977666
No 156
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=92.27 E-value=2.7 Score=42.85 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=73.9
Q ss_pred CceEEec-CCCCCCCCcEEEecChHHHHHH---hccCCcccccccccccccCCceeeeeEEEEEe-eecC------cEEE
Q 002880 648 NNLWILK-PWNMARTIDTSVTDDLSAVIRL---METGPKICQKYIEFPALFQGRKFDLRYIVLVR-SMDP------LEIF 716 (871)
Q Consensus 648 ~~~WIvK-P~~~srG~GI~v~~~l~~i~~~---~~~~~~IvQkYI~~PlLi~grKFDlR~yVLvt-S~~P------L~vy 716 (871)
+-..|+| +..|.-|+|-.++++.+++.+. ...+++|+.++|. |+--+=|++. +.+. +.--
T Consensus 28 G~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~---------f~~EiSvivaR~~~G~~~~yp~~en 98 (172)
T PF02222_consen 28 GFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP---------FDREISVIVARDQDGEIRFYPPVEN 98 (172)
T ss_dssp TSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE------------ESEEEEEEEEEETTSEEEEEEEEEE
T ss_pred CCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC---------CcEEEEEEEEEcCCCCEEEEcCceE
Confidence 3567999 6678899999999987766553 4568899999997 4444444332 2221 1111
Q ss_pred EEcceEEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCC
Q 002880 717 LSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHP 796 (871)
Q Consensus 717 ~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~ 796 (871)
+|++|.++.+..|.. --+.+..++.++..++..+..
T Consensus 99 ~~~~~il~~s~~Pa~----------------------------------------i~~~~~~~a~~ia~~i~~~l~---- 134 (172)
T PF02222_consen 99 VHRDGILHESIAPAR----------------------------------------ISDEVEEEAKEIARKIAEALD---- 134 (172)
T ss_dssp EEETTEEEEEEESCS----------------------------------------S-HHHHHHHHHHHHHHHHHHT----
T ss_pred EEECCEEEEEECCCC----------------------------------------CCHHHHHHHHHHHHHHHHHcC----
Confidence 222222222221110 012355566667666665542
Q ss_pred CCCCCCcEEEEeeeEEEcCCCc-eEEEEecCCCCC
Q 002880 797 EMHSSKSRAMYGVDIMLDSSFQ-PKLLEVTYCPDC 830 (871)
Q Consensus 797 ~~~~~~~fel~G~D~mlD~~~k-pwLLEVN~~P~l 830 (871)
...+|++.|.++.+++ .|+=||-..|.-
T Consensus 135 ------~vGv~~VE~Fv~~~g~~v~vNEiaPRpHn 163 (172)
T PF02222_consen 135 ------YVGVLAVEFFVTKDGDEVLVNEIAPRPHN 163 (172)
T ss_dssp ------SSEEEEEEEEEETTSTEEEEEEEESS--G
T ss_pred ------cEEEEEEEEEEecCCCEEEEEeccCCccC
Confidence 4689999999999998 999999888753
No 157
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=90.71 E-value=1.1 Score=49.49 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=29.7
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhccCCcccccccccccccCCceeeeeE
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIEFPALFQGRKFDLRY 703 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~~~~~IvQkYI~~PlLi~grKFDlR~ 703 (871)
...|+||..|+.|. +.++.--+++. ..+.|.|+||+ |+.+..-+
T Consensus 150 kt~IlKPv~GaGG~-~el~~~~Ee~~----~~~~i~Qefi~------G~p~Svs~ 193 (389)
T COG2232 150 KTLILKPVSGAGGL-VELVKFDEEDP----PPGFIFQEFIE------GRPVSVSF 193 (389)
T ss_pred eeeEEeeccCCCce-eeecccccccC----CcceehhhhcC------CceeEEEE
Confidence 67899999999885 33333223332 26799999998 67665443
No 158
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=90.58 E-value=3.6 Score=43.30 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=33.0
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc-----------cCCcccccccccc
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME-----------TGPKICQKYIEFP 691 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----------~~~~IvQkYI~~P 691 (871)
-..++||..+..|+|+.++.+.+++....+ ..+..+.|||++|
T Consensus 39 yPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~ 92 (211)
T PF02786_consen 39 YPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA 92 (211)
T ss_dssp SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE
T ss_pred CceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh
Confidence 568999999999999999999888775442 4678899999864
No 159
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.00 E-value=0.027 Score=66.27 Aligned_cols=172 Identities=22% Similarity=0.197 Sum_probs=113.4
Q ss_pred CCceeEEeeccccccccccccccccccC--CCCcEeeccCCccccHH--HHHHHHhcCCCCCeeeCCCCcccccccccch
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKF--PDLQALSLCGNKLETVE--IIVQEVTKLKNLRALWLNNNPVLKKCDHCME 228 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~--p~L~~L~Ls~N~L~~~~--~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~ 228 (871)
..++..|+|++|++.+.+...+.=.... ..|+.|.+..|.+++.+ .+...+.+...|+.|+|+.|.+.........
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence 3557789999999998654443211111 45777899999988654 4568888899999999999999632211122
Q ss_pred hHHhh---cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCc-cceeecCCcccccccc----ccCCCC
Q 002880 229 DAILQ---GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQS-VTSLDLSNRCIHNLVN----KAFSPA 300 (871)
Q Consensus 229 ~~i~~---~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~-L~~LdLS~N~I~~l~p----~~~~~~ 300 (871)
+.+.. .-.+++.++++.++.... .|. .+.......++ +..|+++.|.+....- +.+.
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~----~c~---------~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~-- 258 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSS----SCA---------LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS-- 258 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChH----HHH---------HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc--
Confidence 22222 234466666665543211 111 00111122334 6679999999985511 2333
Q ss_pred CC-CCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 301 EM-PSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 301 ~l-~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+ +.|+.|+++.|.|.+-...++.+.+..++.|+.|.++
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcc
Confidence 34 6789999999999998888999999999999999998
No 160
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=89.65 E-value=2.5 Score=50.39 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=48.0
Q ss_pred Ccccceecc---CCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh-----------ccCCcccc
Q 002880 620 EWLQPTYNL---ETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM-----------ETGPKICQ 685 (871)
Q Consensus 620 ~~lP~Tf~L---~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~-----------~~~~~IvQ 685 (871)
+.+|-|=-- -.|..+|++.| +-..|+|...|..|+|+.++++.+++.... ..+...|-
T Consensus 161 pvVPGTpgPitt~~EA~eF~k~y--------G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvE 232 (1176)
T KOG0369|consen 161 PVVPGTPGPITTVEEALEFVKEY--------GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVE 232 (1176)
T ss_pred CccCCCCCCcccHHHHHHHHHhc--------CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHH
Confidence 456655321 12566787777 367899999999999999999988766432 35788999
Q ss_pred ccccccc
Q 002880 686 KYIEFPA 692 (871)
Q Consensus 686 kYI~~Pl 692 (871)
|+|++|-
T Consensus 233 kF~ekPr 239 (1176)
T KOG0369|consen 233 KFLEKPR 239 (1176)
T ss_pred hhhcCcc
Confidence 9999874
No 161
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.24 E-value=0.69 Score=43.52 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=55.4
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.+.+.+ ++.. ........|++|+.|.+.++ +..++. ..+..+++|+.+.+.++ +.... ...+
T Consensus 13 ~l~~i~~~~-~~~~---I~~~~F~~~~~l~~i~~~~~-~~~i~~--~~F~~~~~l~~i~~~~~-~~~i~-----~~~F-- 77 (129)
T PF13306_consen 13 NLESITFPN-TIKK---IGENAFSNCTSLKSINFPNN-LTSIGD--NAFSNCKSLESITFPNN-LKSIG-----DNAF-- 77 (129)
T ss_dssp T--EEEETS-T--E---E-TTTTTT-TT-SEEEESST-TSCE-T--TTTTT-TT-EEEEETST-T-EE------TTTT--
T ss_pred CCCEEEECC-CeeE---eChhhccccccccccccccc-ccccce--eeeeccccccccccccc-ccccc-----cccc--
Confidence 455666653 3332 23345677889999999886 776654 56888888999998763 31111 1110
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~ 314 (871)
..+++|+.+++..+ +..+....|. .+ +|+.+.+.+ .
T Consensus 78 ---------------------------------------~~~~~l~~i~~~~~-~~~i~~~~f~--~~-~l~~i~~~~-~ 113 (129)
T PF13306_consen 78 ---------------------------------------SNCTNLKNIDIPSN-ITEIGSSSFS--NC-NLKEINIPS-N 113 (129)
T ss_dssp ---------------------------------------TT-TTECEEEETTT--BEEHTTTTT--T--T--EEE-TT-B
T ss_pred ---------------------------------------cccccccccccCcc-ccEEchhhhc--CC-CceEEEECC-C
Confidence 11556777788765 6666556666 55 888888775 4
Q ss_pred CCCcchHHHHHHhcCCCCcc
Q 002880 315 LEQNSVRELLEVLKGFPCLQ 334 (871)
Q Consensus 315 L~~l~~~~i~~~l~~lp~L~ 334 (871)
+..++. ..+.+|++|+
T Consensus 114 ~~~i~~----~~F~~~~~l~ 129 (129)
T PF13306_consen 114 ITKIEE----NAFKNCTKLK 129 (129)
T ss_dssp -SS--------GGG------
T ss_pred ccEECC----ccccccccCC
Confidence 444322 3566666663
No 162
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=88.82 E-value=6.1 Score=45.41 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=24.7
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
+..|.+||..++.|+|+.|+.+.++..+.
T Consensus 138 g~piVVKadGLaaGKGV~V~~~~eeA~~a 166 (428)
T COG0151 138 GAPIVVKADGLAAGKGVIVAMTLEEAEAA 166 (428)
T ss_pred CCCEEEecccccCCCCeEEcCCHHHHHHH
Confidence 35599999999999999999998776653
No 163
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.61 E-value=0.33 Score=30.06 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=6.3
Q ss_pred CcceEeccCCCCCC
Q 002880 304 SLSHLNIRGNPLEQ 317 (871)
Q Consensus 304 ~L~~LnLs~N~L~~ 317 (871)
+|+.|+|++|+|.+
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45566666665554
No 164
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=86.43 E-value=2.3 Score=48.68 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=85.2
Q ss_pred cEEccccCCCcccccHHHHH---HHHHhcCCCCccc--ceecc--CCChhHHHhhhhhhhccCCCceEEecCCCCCCCCc
Q 002880 591 QYVNQFPFESCLVMKHHLAE---TVQKAHGSPEWLQ--PTYNL--ETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTID 663 (871)
Q Consensus 591 q~vN~fP~~~~lt~K~~L~~---~l~~~~g~~~~lP--~Tf~L--~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~G 663 (871)
.-|--=||..++-.|..++- .++++.|....+| +||.. +.++...++.- ..-++||..++.|-|
T Consensus 310 VtiaNA~GtGV~ddka~~~y~P~~~~~ylge~~lL~nv~T~~c~~~~el~~VL~~l---------~~lViK~~~~~gg~~ 380 (488)
T COG2308 310 VTIANALGTGVADDKALYAYVPQMIEYYLGEEPLLPNVPTYWCGEPDELEHVLANL---------SELVIKPVEGSGGYG 380 (488)
T ss_pred EEEecCCCcCcccchhHHHHHHHHHHHHcccccccCCCCeeecCCHHHHHHHHhch---------hhheEeeeccCCCCc
Confidence 33444579999999998765 4555556555554 46655 34555554432 345889999988777
Q ss_pred EEEecCh--HHHH---HHhc--cCCcccccccc---cccccCC----ceeeeeEEEEEeeecCcEEEEEcceEEEeecCC
Q 002880 664 TSVTDDL--SAVI---RLME--TGPKICQKYIE---FPALFQG----RKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNP 729 (871)
Q Consensus 664 I~v~~~l--~~i~---~~~~--~~~~IvQkYI~---~PlLi~g----rKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~ 729 (871)
+.+=..+ +++. ..+. .+.||+|.-++ -|..++| |..|+|.|++.+ +-.+++.-.|+.|++...
T Consensus 381 ~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~---~~~~~v~pGGLtRVal~~ 457 (488)
T COG2308 381 MLVGPAASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALAD---RDGVQVMPGGLTRVALRE 457 (488)
T ss_pred ceeccccCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEc---CCceEEcccceeeeeecC
Confidence 7654322 2232 2222 45789998765 3556665 899999999987 456888999999999864
No 165
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.16 E-value=0.047 Score=57.37 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=64.1
Q ss_pred cccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccc
Q 002880 177 SSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF 256 (871)
Q Consensus 177 ~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~ 256 (871)
...+...+.|+|+.|++-.++ ..++.++.|..|+||.|++.-.. ..+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~---~n~s~~t~~~rl~~sknq~~~~~---------~d~~q------------------- 86 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG---KNFSILTRLVRLDLSKNQIKFLP---------KDAKQ------------------- 86 (326)
T ss_pred hhccceeeeehhhhhHHHhhc---cchHHHHHHHHHhccHhhHhhCh---------hhHHH-------------------
Confidence 456788899999999987654 46777788899999999883221 11111
Q ss_pred cccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCC
Q 002880 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 257 ~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
+..+..+++-+|+.+.. |.++. .+|.++++++.+|++.
T Consensus 87 -------------------~~e~~~~~~~~n~~~~~-p~s~~--k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 87 -------------------QRETVNAASHKNNHSQQ-PKSQK--KEPHPKKNEQKKTEFF 124 (326)
T ss_pred -------------------HHHHHHHHhhccchhhC-Ccccc--ccCCcchhhhccCcch
Confidence 34466777888888777 77777 8999999999999875
No 166
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=85.55 E-value=0.45 Score=31.35 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=13.3
Q ss_pred ccceeecCCccccccccccCC
Q 002880 278 SVTSLDLSNRCIHNLVNKAFS 298 (871)
Q Consensus 278 ~L~~LdLS~N~I~~l~p~~~~ 298 (871)
+|+.||||+|+|+.+ |..|.
T Consensus 1 ~L~~Ldls~n~l~~i-p~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI-PSSFS 20 (22)
T ss_dssp TESEEEETSSEESEE-GTTTT
T ss_pred CccEEECCCCcCEeC-Chhhc
Confidence 477888888888854 43343
No 167
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=84.84 E-value=3.6 Score=48.53 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=47.9
Q ss_pred CCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-----------cCCcccccc
Q 002880 619 PEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-----------TGPKICQKY 687 (871)
Q Consensus 619 ~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----------~~~~IvQkY 687 (871)
.+.+|-+--.-.+...+.+ + ...-+-..++|...|..|+|+++..+.+++...++ .+..++-||
T Consensus 128 Vp~VPG~~g~~qd~~~~~~-~----A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEky 202 (645)
T COG4770 128 VPTVPGYHGPIQDAAELVA-I----AEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKY 202 (645)
T ss_pred CCccCCCCCcccCHHHHHH-H----HHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhh
Confidence 4466655544334333322 2 12234667899999999999999999988876553 467899999
Q ss_pred ccccc
Q 002880 688 IEFPA 692 (871)
Q Consensus 688 I~~Pl 692 (871)
+++|=
T Consensus 203 l~~PR 207 (645)
T COG4770 203 LDKPR 207 (645)
T ss_pred cCCCc
Confidence 99874
No 168
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.09 E-value=0.6 Score=28.92 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=5.6
Q ss_pred CCcEeeccCCccc
Q 002880 182 DLQALSLCGNKLE 194 (871)
Q Consensus 182 ~L~~L~Ls~N~L~ 194 (871)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 169
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=81.73 E-value=1.8 Score=41.63 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=36.0
Q ss_pred eeeeccccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccc
Q 002880 422 VWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDF 479 (871)
Q Consensus 422 ~wy~~de~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~ 479 (871)
.-..|=-+++-++||-.||+.+.+-....++ .-.+--++||++|||||=.|
T Consensus 111 ~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~-------~~~~~a~r~I~~GeEi~isY 161 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDPNCEVSFDFDGDGG-------CLVVRATRDIKKGEEIFISY 161 (162)
T ss_dssp EEEEEETGGGGSEEESSTSEEEEEEEETTTT-------EEEEEESS-B-TTSBEEEES
T ss_pred cccccCcHhHheccccccccceeeEeecccc-------eEEEEECCccCCCCEEEEEE
Confidence 3355556789999999999998765553444 34455699999999998655
No 170
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.41 E-value=0.48 Score=49.14 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=17.4
Q ss_pred HhcCCCCcceeEeeCCCCCCchh---hHHhhhCCCcc
Q 002880 326 VLKGFPCLQSLGVDIPGPLGESA---IEILESLPTLC 359 (871)
Q Consensus 326 ~l~~lp~L~~L~L~iP~~l~~~~---~~Il~~L~~L~ 359 (871)
.|..|++|+.|.+..+..+.+.. ..+-.-||++.
T Consensus 171 ~L~~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~ 207 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLPYVANLELVQRQLEEALPKCD 207 (221)
T ss_pred HHHHhhhhHHHHhcCchhhhchHHHHHHHHHhCcccc
Confidence 34556666666666333333322 33344666653
No 171
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.95 E-value=0.95 Score=30.83 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=8.7
Q ss_pred ccceeecCCccccccccc
Q 002880 278 SVTSLDLSNRCIHNLVNK 295 (871)
Q Consensus 278 ~L~~LdLS~N~I~~l~p~ 295 (871)
+|+.|+|++|+|..+++.
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 445555555555554333
No 172
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.95 E-value=0.95 Score=30.83 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=8.7
Q ss_pred ccceeecCCccccccccc
Q 002880 278 SVTSLDLSNRCIHNLVNK 295 (871)
Q Consensus 278 ~L~~LdLS~N~I~~l~p~ 295 (871)
+|+.|+|++|+|..+++.
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 445555555555554333
No 173
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=80.72 E-value=2.4 Score=51.40 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=51.4
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH----
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL---- 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~---- 676 (871)
++.+|..|+-.=..+-++|.++|..|... + ++ ....|+.||..|-.|.+|.+++.-..+...
T Consensus 494 llsNKaiLplLW~l~p~Hp~LLpayfe~d---~-~l----------~~~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~ 559 (619)
T PRK10507 494 IPGNKAILPVLWSLFPHHRYLLDTDFTVN---D-EL----------VKTGYAVKPIAGRCGSNIDLVSHQEEVLDKTSGK 559 (619)
T ss_pred hcccHHHHHHHHHhCCCCcccccccccCC---c-cc----------ccCCeEeccCCCcCCCCEEEEeCCCcEeeccCCC
Confidence 35667666665555555566666655321 1 11 123499999999999999999762332221
Q ss_pred hccCCcccccccccccccCCc
Q 002880 677 METGPKICQKYIEFPALFQGR 697 (871)
Q Consensus 677 ~~~~~~IvQkYI~~PlLi~gr 697 (871)
.....+|.|+|++-| .++|.
T Consensus 560 y~~~~~IyQ~~~~LP-~f~~~ 579 (619)
T PRK10507 560 FAEQKNIYQQLWCLP-KVDGK 579 (619)
T ss_pred CCCCCeEEEEeccCc-ccCCC
Confidence 123568999999987 34543
No 174
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=79.92 E-value=2.5 Score=48.68 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=55.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH---hc
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL---ME 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~---~~ 678 (871)
+.+|..|+-.=..+-++|.++|..| .++. +... ......+.|+.||..|-.|.+|.++++-..+.+. ..
T Consensus 269 lsnKalLalLW~l~p~hp~LLpay~--~~d~--~~~~----~~~~~~~~yV~KPi~gREG~nV~i~~~g~~~~~~~g~y~ 340 (397)
T PHA02117 269 LSNKGLLALLYERYPDCPWLVPAYV--EDDF--DREN----LFTLENPKYVSKPLLSREGNNIHIFEYGGESEDTDGNYA 340 (397)
T ss_pred hccHHHHHHHHHhcCCCcccccccc--cccc--cccc----hhccccCCEEeccCCCcCCCCEEEEECCeEEeccCCCCC
Confidence 5678888776665555665565533 1111 0000 0001123499999999999999999763333221 11
Q ss_pred cCCcccccccccccccCCceeeeeEEE
Q 002880 679 TGPKICQKYIEFPALFQGRKFDLRYIV 705 (871)
Q Consensus 679 ~~~~IvQkYI~~PlLi~grKFDlR~yV 705 (871)
..++|.|+|++-| -++|+-.=|..|+
T Consensus 341 ~~~~IyQ~~~~Lp-~f~g~~~~iGsw~ 366 (397)
T PHA02117 341 EEPRVVQQLIEWG-RFDGCYPMIGVWM 366 (397)
T ss_pred CCCeEEEEccCCc-ccCCcEEEEEEEE
Confidence 3578999999988 4566533333333
No 175
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=78.69 E-value=7.7 Score=45.26 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=37.1
Q ss_pred CCceEEecCCCCCCCCcEEEecChHHHHHHhc-----------cCCccccccccccc
Q 002880 647 LNNLWILKPWNMARTIDTSVTDDLSAVIRLME-----------TGPKICQKYIEFPA 692 (871)
Q Consensus 647 ~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----------~~~~IvQkYI~~Pl 692 (871)
-+-..++|++.|..|+|+.+..+.+++....+ ....++-|||+||-
T Consensus 147 IgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR 203 (670)
T KOG0238|consen 147 IGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR 203 (670)
T ss_pred cCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc
Confidence 34567899999999999999998887765432 35689999999984
No 176
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.87 E-value=1.7 Score=29.52 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=17.0
Q ss_pred CCCcceEeccCCCCCCcchH
Q 002880 302 MPSLSHLNIRGNPLEQNSVR 321 (871)
Q Consensus 302 l~~L~~LnLs~N~L~~l~~~ 321 (871)
+++|++|+|++|+|..++..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 57899999999999987643
No 177
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.87 E-value=1.7 Score=29.52 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=17.0
Q ss_pred CCCcceEeccCCCCCCcchH
Q 002880 302 MPSLSHLNIRGNPLEQNSVR 321 (871)
Q Consensus 302 l~~L~~LnLs~N~L~~l~~~ 321 (871)
+++|++|+|++|+|..++..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 57899999999999987643
No 178
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=75.26 E-value=2.1 Score=53.44 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.9
Q ss_pred cccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCccccccc
Q 002880 433 VRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL 480 (871)
Q Consensus 433 i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~ 480 (871)
|.||-.|||+|++| .-+| .+=-+|++.+||.+|||+|-||=
T Consensus 1254 inhscKPNc~~qkw--SVNG-----~~Rv~L~A~rDi~kGEELtYDYN 1294 (1306)
T KOG1083|consen 1254 INHSCKPNCEMQKW--SVNG-----EYRVGLFALRDLPKGEELTYDYN 1294 (1306)
T ss_pred cccccCCCCccccc--cccc-----eeeeeeeecCCCCCCceEEEecc
Confidence 56999999999985 4455 55688999999999999999974
No 179
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.10 E-value=2.7 Score=28.00 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=8.3
Q ss_pred CCCCcEeeccCCcccc
Q 002880 180 FPDLQALSLCGNKLET 195 (871)
Q Consensus 180 ~p~L~~L~Ls~N~L~~ 195 (871)
+++|+.|+|++|+|++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 3566666666666653
No 180
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=73.37 E-value=3.2 Score=46.48 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=58.7
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc--
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-- 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-- 678 (871)
++++|..|...=+++.++|..+|..|.-... .+ ....|+.||..|-.|.+|.++.+-........
T Consensus 262 ilsNK~lLplLW~~fPnHp~LL~t~F~~~~~-~~------------~~~~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~ 328 (387)
T COG0754 262 ILSNKALLPLLWERFPNHPNLLPTYFEPDDE-EK------------LGESYVRKPLFGREGANVSIFEDAGKVLDKADGP 328 (387)
T ss_pred HhccccHHHHHHHhCCCCcccccccCCCCcc-cc------------chhhhhccccccccCCCeeEEecCCceeecCCCC
Confidence 3678888888777776777777766642221 11 11338899999999999999987554443322
Q ss_pred --cCCcccccccccccccCCceeeeeEEEE
Q 002880 679 --TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 679 --~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
...+|.|+|.+-| ||.--+|++
T Consensus 329 Yg~eg~IyQe~~~Lp------k~~~~Y~~v 352 (387)
T COG0754 329 YGEEGMIYQEFYPLP------KFGDSYYQV 352 (387)
T ss_pred ccccchhhhhhccCc------ccCCeeEEE
Confidence 3468999999977 555555544
No 181
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=72.64 E-value=56 Score=40.59 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=48.6
Q ss_pred CCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-----------cCCcccccc
Q 002880 619 PEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-----------TGPKICQKY 687 (871)
Q Consensus 619 ~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----------~~~~IvQkY 687 (871)
.+-+|-|=-.+...++-. .| .+..+-..|+|.+.|..|+|+.++++.+++.+..+ .+..-|-||
T Consensus 134 vPvipgt~~~~~~~ee~~-~f----a~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ 208 (1149)
T COG1038 134 VPVIPGTDGPIETIEEAL-EF----AEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKL 208 (1149)
T ss_pred CCccCCCCCCcccHHHHH-HH----HHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhh
Confidence 457777766655443322 22 12234678999999999999999999887776432 456788999
Q ss_pred ccccc
Q 002880 688 IEFPA 692 (871)
Q Consensus 688 I~~Pl 692 (871)
|+||-
T Consensus 209 ve~pk 213 (1149)
T COG1038 209 VENPK 213 (1149)
T ss_pred hcCcc
Confidence 99974
No 182
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.97 E-value=3.3 Score=28.78 Aligned_cols=18 Identities=39% Similarity=0.353 Sum_probs=12.4
Q ss_pred CCCCCeeeCCCCcccccc
Q 002880 206 LKNLRALWLNNNPVLKKC 223 (871)
Q Consensus 206 L~~Lk~L~Ls~N~l~~~~ 223 (871)
|++|+.|||++|+|...+
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 457778888888775443
No 183
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=67.02 E-value=4.9 Score=45.84 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=46.0
Q ss_pred ccccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCC
Q 002880 426 MDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (871)
Q Consensus 426 ~de~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~ 482 (871)
.-.+|--|+||=.||+.+.+-++- ....+.-+-.+|++++|.+|+|+|-||...
T Consensus 269 ~GNv~RfinHSC~PN~~~~~v~~~---~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 269 HGNVARFINHSCSPNLLYQAVFQD---EFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred cccccccccCCCCccceeeeeeec---CCccchheeeeeeccccCCCcccchhhccc
Confidence 347899999999999999987777 234467889999999999999999999754
No 184
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=61.55 E-value=0.24 Score=52.29 Aligned_cols=56 Identities=21% Similarity=0.133 Sum_probs=45.4
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++.|..||||.|+|.-+ |+.+. ++..+..+++.+|.++..| ...+..|.++.+++.
T Consensus 64 ~t~~~rl~~sknq~~~~-~~d~~--q~~e~~~~~~~~n~~~~~p-----~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIKFL-PKDAK--QQRETVNAASHKNNHSQQP-----KSQKKEPHPKKNEQK 119 (326)
T ss_pred HHHHHHHhccHhhHhhC-hhhHH--HHHHHHHHHhhccchhhCC-----ccccccCCcchhhhc
Confidence 67788999999999888 77676 7889999999999988644 456777887777765
No 185
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.24 E-value=4.5 Score=42.19 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=69.7
Q ss_pred ccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCC
Q 002880 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPT 357 (871)
Q Consensus 278 ~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~ 357 (871)
.++.+|-|+..|....-+.+. .+++|+.|.+.++.=-+ .+.|.-+-+-.|+|+.|+|+-+..+++....-+-.+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~--~l~~i~~l~l~~ck~~d--D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR--DLRSIKSLSLANCKYFD--DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh--ccchhhhheeccccchh--hHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 478999999999887445555 68888888888876432 45555555567999999999888888888788889999
Q ss_pred cccccCcccchhhc
Q 002880 358 LCTLNGVTASKILE 371 (871)
Q Consensus 358 L~~Ln~~~vs~~~~ 371 (871)
|+.|.-.+...+.+
T Consensus 178 Lr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 178 LRRLHLYDLPYVAN 191 (221)
T ss_pred hHHHHhcCchhhhc
Confidence 99888888775533
No 186
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=59.05 E-value=75 Score=35.47 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=43.9
Q ss_pred eccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc---------cCCcccccccccccccCC
Q 002880 626 YNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME---------TGPKICQKYIEFPALFQG 696 (871)
Q Consensus 626 f~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~---------~~~~IvQkYI~~PlLi~g 696 (871)
|..-+.+.+|.+.- ..-+-.-++||..++-|+|-.++++.+++...-+ ++..||-.+|
T Consensus 132 Y~fa~s~~e~~~a~-----~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv-------- 198 (394)
T COG0027 132 YRFADSLEELRAAV-----EKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFV-------- 198 (394)
T ss_pred ccccccHHHHHHHH-----HHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEe--------
Confidence 44444455554321 2233456899999999999999999998875321 2344555554
Q ss_pred ceeeeeEEEEE
Q 002880 697 RKFDLRYIVLV 707 (871)
Q Consensus 697 rKFDlR~yVLv 707 (871)
|||+-+-+|.
T Consensus 199 -~fd~EiTlLt 208 (394)
T COG0027 199 -KFDFEITLLT 208 (394)
T ss_pred -cceEEEEEEE
Confidence 5888886663
No 187
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.55 E-value=10 Score=26.47 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=11.0
Q ss_pred CCcceEeccCCCCCC
Q 002880 303 PSLSHLNIRGNPLEQ 317 (871)
Q Consensus 303 ~~L~~LnLs~N~L~~ 317 (871)
++|+.|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467778888887764
No 188
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.31 E-value=7.1 Score=27.12 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=7.7
Q ss_pred ccceeecCCcccccc
Q 002880 278 SVTSLDLSNRCIHNL 292 (871)
Q Consensus 278 ~L~~LdLS~N~I~~l 292 (871)
+|+.|+|++|.|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 455555555555444
No 189
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=55.14 E-value=7.2 Score=27.15 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=12.7
Q ss_pred CCcceEeccCCCCCCcc
Q 002880 303 PSLSHLNIRGNPLEQNS 319 (871)
Q Consensus 303 ~~L~~LnLs~N~L~~l~ 319 (871)
++|+.|++++|+|+++|
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 46788888888887644
No 190
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=53.96 E-value=8 Score=45.82 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=39.2
Q ss_pred cccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCC
Q 002880 427 DELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (871)
Q Consensus 427 de~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~ 483 (871)
..+|..|+||.+||+...+ .+.. + +..++..-++||.+|+|+|-||=...
T Consensus 403 g~~~r~~nHS~~pN~~~~~---~~~~--g--~~~~~~~~~rDI~~geEl~~dy~~~~ 452 (480)
T COG2940 403 GDVARFINHSCTPNCEASP---IEVN--G--IFKISIYAIRDIKAGEELTYDYGPSL 452 (480)
T ss_pred ccccceeecCCCCCcceec---cccc--c--cceeeecccccchhhhhhcccccccc
Confidence 4789999999999999553 2221 1 56888899999999999999985443
No 191
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=50.09 E-value=12 Score=42.00 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=35.3
Q ss_pred CceeeeeccccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccC
Q 002880 419 ETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY 481 (871)
Q Consensus 419 ~~~~wy~~de~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~ 481 (871)
-+..|.=+ +.-|+|.=.|||+ |.+.|+ .=.-+=.++||++|||||.=|=.
T Consensus 189 caqLwLGP---aafINHDCrpnCk-----Fvs~g~-----~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 189 CAQLWLGP---AAFINHDCRPNCK-----FVSTGR-----DTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred hhhheecc---HHhhcCCCCCCce-----eecCCC-----ceeeeehhhcCCCCceeEEeecc
Confidence 34567433 3449999999999 667772 22234468999999999997743
No 192
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=46.27 E-value=11 Score=42.36 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=39.7
Q ss_pred EEccccCCCcccccHHHH---HHHHHhcCCCCc---ccceeccC-CChhHHHhhhhhhhccCCCceEEecCCCCCCCCcE
Q 002880 592 YVNQFPFESCLVMKHHLA---ETVQKAHGSPEW---LQPTYNLE-THLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDT 664 (871)
Q Consensus 592 ~vN~fP~~~~lt~K~~L~---~~l~~~~g~~~~---lP~Tf~L~-~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI 664 (871)
.|=.-||+.++..|..++ +.++.+.|.... +|.++.-. .+....++.- ..|++||..++.|.|+
T Consensus 233 ~iaNa~G~gv~edkal~~~lp~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l---------~~lvvKp~~g~gg~~~ 303 (330)
T PF04174_consen 233 VIANAPGSGVAEDKALYAFLPRMIRYYLGEELLLPNVPTWWCGDPEDREYVLANL---------DELVVKPADGYGGKGV 303 (330)
T ss_dssp EEES-TTTHHHHSTTTGGGHHHHHHHHH-S--SSEE---EETTSHHHHHHHHHSG---------GGEEEEE--------E
T ss_pred EEECCCccchhcchhHHHHhHHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhch---------hhcEEEecCCCCCCcc
Confidence 344678999999998654 345555565544 44444332 2333333322 6799999999999999
Q ss_pred EEecChH----HHHHHhcc--CCcccc
Q 002880 665 SVTDDLS----AVIRLMET--GPKICQ 685 (871)
Q Consensus 665 ~v~~~l~----~i~~~~~~--~~~IvQ 685 (871)
.+-.+++ +..+.+.. ..||+|
T Consensus 304 ~~G~~~s~e~~~~~~~I~~~P~~yVAQ 330 (330)
T PF04174_consen 304 YIGPKLSAERRALRAEILARPHRYVAQ 330 (330)
T ss_dssp EEGGG--HHHHHHHHHHHHSGGGEEEE
T ss_pred eeCCcCCHHHHHHHHHHHhCccCCccC
Confidence 9876655 22222222 367776
No 193
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=45.90 E-value=18 Score=40.66 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=19.3
Q ss_pred cEEEEeeeEEEcCCCceEEEEecCC-CC
Q 002880 803 SRAMYGVDIMLDSSFQPKLLEVTYC-PD 829 (871)
Q Consensus 803 ~fel~G~D~mlD~~~kpwLLEVN~~-P~ 829 (871)
.-.++|+|+..+.+|++|+||.|.+ |+
T Consensus 67 ~~~~~g~Dl~r~~dG~w~VleDn~~~Ps 94 (330)
T PF04174_consen 67 RLHFYGADLVRDPDGRWRVLEDNTRAPS 94 (330)
T ss_dssp S-SEEEEEEEE-SSS-EEEEEEE-SS--
T ss_pred EEEEEEEeeeECCCCCEEEEEecCCCCc
Confidence 3569999999999999999999994 53
No 194
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=35.97 E-value=30 Score=31.90 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=27.2
Q ss_pred cChHHHHHHHHcCCcEEeCCCCCceEEEecc
Q 002880 545 TDIPYVEEFLTRTEFVITTEPKDADIIWTSL 575 (871)
Q Consensus 545 ~d~~~V~~~L~~~gf~~~~~~~~~di~W~~~ 575 (871)
.|.+.+...|...||+.++++++||++-..+
T Consensus 14 ~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNT 44 (98)
T PF00919_consen 14 YDSERIASILQAAGYEIVDDPEEADVIIINT 44 (98)
T ss_pred HHHHHHHHHHHhcCCeeecccccCCEEEEEc
Confidence 3677899999999999999999999987754
No 195
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.39 E-value=22 Score=49.61 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=30.5
Q ss_pred ecCCccccccccccCCCCCCCCcceEeccCCCCCC
Q 002880 283 DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317 (871)
Q Consensus 283 dLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~ 317 (871)
||++|+|+.+.+..|. .+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~--~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICA--NLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhc--cCCCceEEEeeCCcccc
Confidence 7999999999888888 79999999999999976
No 196
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=34.05 E-value=3.5e+02 Score=31.37 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=26.2
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
-..|+||..+.+|.|-.++.|-+++.+..+
T Consensus 151 ~PvIVrP~~~lGG~G~~i~~n~eel~~~~~ 180 (400)
T COG0458 151 YPVIVKPSFGLGGSGGGIAYNEEELEEIIE 180 (400)
T ss_pred CCEEEecCcCCCCCceeEEeCHHHHHHHHH
Confidence 568999999999999999999888877654
No 197
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=32.88 E-value=48 Score=36.17 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=42.6
Q ss_pred cccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCCCChhhchhhccccc
Q 002880 429 LGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWF 497 (871)
Q Consensus 429 ~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~~~~~~r~~~l~~w~ 497 (871)
+|--|+||-.+|+.+--- .=.| .-.-||---+||..|||++-||= |...-+..-.||+
T Consensus 333 lGRLINHS~~gNl~TKvv--~Idg-----~pHLiLvA~rdIa~GEELlYDYG----DRSkesi~~hPWL 390 (392)
T KOG1085|consen 333 LGRLINHSVRGNLKTKVV--EIDG-----SPHLILVARRDIAQGEELLYDYG----DRSKESIAKHPWL 390 (392)
T ss_pred chhhhcccccCcceeeEE--EecC-----CceEEEEeccccccchhhhhhcc----ccchhHHhhCccc
Confidence 799999999999975421 2234 45678888999999999999973 3333455667885
No 198
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=32.31 E-value=44 Score=42.99 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=39.2
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCCCCh
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGED 486 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~~~~ 486 (871)
.+...|+||=+|||- +=.+.+.+. ==-|++-.++|.+|||+|-||.+...++
T Consensus 938 niAr~InHsC~PNCy-akvi~V~g~------~~IvIyakr~I~~~EElTYDYkF~~e~~ 989 (1005)
T KOG1080|consen 938 NIARFINHSCNPNCY-AKVITVEGD------KRIVIYSKRDIAAGEELTYDYKFPTEDD 989 (1005)
T ss_pred chhheeecccCCCce-eeEEEecCe------eEEEEEEecccccCceeeeecccccccc
Confidence 456789999999995 223344333 2356778999999999999999877665
No 199
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=31.91 E-value=72 Score=35.22 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=48.0
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCC------CCCcEEEecChHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMA------RTIDTSVTDDLSAVI 674 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~s------rG~GI~v~~~l~~i~ 674 (871)
-++.|-.|++.+.+. | --+|.||.+.++.+....+. .-..|+||.++. |.+-+. ..+-+++.
T Consensus 111 wlceKPllY~ra~el-g--l~~P~Ty~v~S~~d~~~~el--------~FPvILKP~mgg~~~~~araKa~~-a~d~ee~k 178 (415)
T COG3919 111 WLCEKPLLYNRAEEL-G--LPYPKTYLVNSEIDTLVDEL--------TFPVILKPGMGGSVHFEARAKAFT-AADNEEMK 178 (415)
T ss_pred HHhhCcHHHHHHHHh-C--CCCcceEEecchhhhhhhhe--------eeeEEecCCCCCcceeehhhheee-ccCHHHHH
Confidence 478898999877665 2 25899999987665554432 234899997653 222222 23333333
Q ss_pred HHh-------ccCCcccccccc
Q 002880 675 RLM-------ETGPKICQKYIE 689 (871)
Q Consensus 675 ~~~-------~~~~~IvQkYI~ 689 (871)
... .....|||..|.
T Consensus 179 ~a~~~a~eeigpDnvvvQe~IP 200 (415)
T COG3919 179 LALHRAYEEIGPDNVVVQEFIP 200 (415)
T ss_pred HHHHHHHHhcCCCceEEEEecC
Confidence 211 246789999996
No 200
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=27.90 E-value=1e+02 Score=35.19 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=58.9
Q ss_pred CCCceEEecCCCCCCCCcEEEecChHHHHHHhc--------------cCCcccccccccccccCCceeeeeEEEEEeeec
Q 002880 646 GLNNLWILKPWNMARTIDTSVTDDLSAVIRLME--------------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMD 711 (871)
Q Consensus 646 ~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~--------------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~ 711 (871)
......|+|..+|.-|.||..+.+.+++..+-. -...|||+.|..==.+++- .-.
T Consensus 255 ~e~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~a-----------vAE 323 (403)
T TIGR02049 255 HTQPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEA-----------VAE 323 (403)
T ss_pred CCCCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCc-----------ccC
Confidence 356889999999999999999999999986431 1357999988742222221 123
Q ss_pred CcEEEEEc----ceEEEeecCCCCCCCCCccccccceeeecc
Q 002880 712 PLEIFLSD----VFWVRLANNPYSLDKHSFFEYETHFTVMNY 749 (871)
Q Consensus 712 PL~vy~y~----~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny 749 (871)
|+ ||+-+ .|+-|+.+..=... ++...-+||.-..+
T Consensus 324 PV-VYmid~~vvggfYRvh~~Rg~dE--NLNapG~~F~plaf 362 (403)
T TIGR02049 324 PV-VYMIGRTVTGGFYRVHTGRGVDE--NLNAPGMHFVPLSF 362 (403)
T ss_pred ce-EEEECCEEeEEEEEecCCCCCcc--cCCCCCCeeeeccc
Confidence 43 45433 46777776553332 36666777765544
No 201
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.22 E-value=13 Score=42.86 Aligned_cols=43 Identities=28% Similarity=0.381 Sum_probs=37.0
Q ss_pred CCCcEEEEeeeEEEcCCCceEEEEecCCCCCCcccccccccccc
Q 002880 800 SSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKYDTEALVT 843 (871)
Q Consensus 800 ~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~~~~~~~~ 843 (871)
..-||+..|+|+.+ ...+||++|+|.-|....+-..++.++-+
T Consensus 11 ~~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~ 53 (565)
T KOG2158|consen 11 ESVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRG 53 (565)
T ss_pred eeeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhh
Confidence 34589999999999 99999999999999999998887665533
No 202
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=24.64 E-value=50 Score=29.24 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=12.9
Q ss_pred HHHcCCCCHHHHHHHHHHhh
Q 002880 21 LLAASGLPQSLHRQLFQKLT 40 (871)
Q Consensus 21 ~l~~~~~p~~~~~~l~~kl~ 40 (871)
.-.|--+|++||++||+--.
T Consensus 11 ~c~alkipe~~wpql~e~~s 30 (106)
T PF09241_consen 11 VCHALKIPEDFWPQLFEATS 30 (106)
T ss_dssp HHHHTT--GGGHHHHHHHHH
T ss_pred hhhhccCcHHHhHHHHHHHH
Confidence 34566789999999987544
No 203
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=24.62 E-value=75 Score=30.84 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=21.4
Q ss_pred EEEeeeEEEcCCCceEEEEecCCCC
Q 002880 805 AMYGVDIMLDSSFQPKLLEVTYCPD 829 (871)
Q Consensus 805 el~G~D~mlD~~~kpwLLEVN~~P~ 829 (871)
.-|.+||.+.++|+..|+|+|..=+
T Consensus 93 ~~~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 93 PAYVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred CeEEEEEEEeCCCCEEEEEecCccc
Confidence 3579999999999999999997433
No 204
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.65 E-value=42 Score=47.17 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=25.1
Q ss_pred eccCCccccHHHHHHHHhcCCCCCeeeCCCCccccc
Q 002880 187 SLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (871)
Q Consensus 187 ~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~ 222 (871)
+|++|+|+.++. ..|..|++|+.|+|++|++.=.
T Consensus 1 DLSnN~LstLp~--g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEE--GICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccCh--HHhccCCCceEEEeeCCccccc
Confidence 577888887654 6777888888888888887433
No 205
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=23.33 E-value=70 Score=37.07 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=26.6
Q ss_pred EEEe-eeEEEcCCCceEEEEecC-CCCCCccccc
Q 002880 805 AMYG-VDIMLDSSFQPKLLEVTY-CPDCTRACKY 836 (871)
Q Consensus 805 el~G-~D~mlD~~~kpwLLEVN~-~P~l~~~~~~ 836 (871)
.+|| |||..|.++.+.|||+|+ +|.+-..|.+
T Consensus 106 slyGRfDfa~dg~g~~KllE~NADTPT~L~Ea~~ 139 (397)
T PHA02117 106 GLYGRFDLIMTPNGGPKMLEYNADTPTILIESAI 139 (397)
T ss_pred cEEEEEEEEEcCCCCeEEEEecCCCCchHHHHHH
Confidence 4666 899999999999999999 8887665543
No 206
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.86 E-value=1.2e+02 Score=20.58 Aligned_cols=15 Identities=33% Similarity=0.682 Sum_probs=10.0
Q ss_pred CCCCcEeeccCCc-cc
Q 002880 180 FPDLQALSLCGNK-LE 194 (871)
Q Consensus 180 ~p~L~~L~Ls~N~-L~ 194 (871)
||+|+.|+|+++. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5677777777774 44
Done!