Query 002880
Match_columns 871
No_of_seqs 457 out of 1541
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 2.4E-57 8.1E-62 503.6 21.2 296 545-859 15-356 (380)
2 3rgz_A Protein brassinosteroid 99.4 4.3E-14 1.5E-18 172.6 5.6 203 154-387 466-722 (768)
3 1h6t_A Internalin B; cell adhe 99.4 4.3E-13 1.5E-17 144.8 12.6 83 274-367 153-238 (291)
4 3m19_A Variable lymphocyte rec 99.4 8.3E-13 2.8E-17 139.0 10.6 153 154-339 35-187 (251)
5 3rfs_A Internalin B, repeat mo 99.4 1.6E-12 5.5E-17 138.5 12.6 149 154-339 41-189 (272)
6 3zyj_A Leucine-rich repeat-con 99.4 8.3E-13 2.8E-17 150.4 10.7 170 154-339 88-263 (440)
7 1ozn_A Reticulon 4 receptor; N 99.4 9.3E-13 3.2E-17 140.8 10.4 191 154-361 32-230 (285)
8 2o6q_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 139.2 11.0 153 154-339 37-189 (270)
9 4fcg_A Uncharacterized protein 99.4 1.9E-13 6.5E-18 150.2 4.3 166 154-339 81-261 (328)
10 3rfs_A Internalin B, repeat mo 99.4 2.1E-12 7.3E-17 137.6 12.3 151 154-339 63-213 (272)
11 1m9s_A Internalin B; cell inva 99.4 1.1E-12 3.9E-17 155.9 11.2 186 156-367 45-235 (605)
12 2ca6_A RAN GTPase-activating p 99.4 1.9E-12 6.5E-17 144.7 11.9 246 92-362 19-309 (386)
13 4fcg_A Uncharacterized protein 99.3 2.9E-13 9.8E-18 148.7 4.4 149 155-339 128-285 (328)
14 1h6u_A Internalin H; cell adhe 99.3 5.6E-12 1.9E-16 137.1 14.5 159 155-339 42-203 (308)
15 3zyi_A Leucine-rich repeat-con 99.3 1.5E-12 5.2E-17 148.8 10.4 170 154-339 99-274 (452)
16 3oja_B Anopheles plasmodium-re 99.3 1.1E-12 3.7E-17 155.6 8.8 59 274-339 251-309 (597)
17 1h6u_A Internalin H; cell adhe 99.3 6.6E-12 2.3E-16 136.5 13.8 160 154-339 63-225 (308)
18 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 3.9E-17 126.4 6.6 131 154-339 17-148 (149)
19 3o6n_A APL1; leucine-rich repe 99.3 1.7E-12 5.9E-17 145.0 8.7 58 275-339 246-303 (390)
20 1ozn_A Reticulon 4 receptor; N 99.3 4.7E-12 1.6E-16 135.3 11.4 170 154-339 56-233 (285)
21 2v70_A SLIT-2, SLIT homolog 2 99.3 3.3E-12 1.1E-16 132.2 9.8 128 156-339 34-161 (220)
22 2z80_A TOLL-like receptor 2, v 99.3 2E-12 6.9E-17 142.6 8.7 169 155-339 53-230 (353)
23 2v9t_B SLIT homolog 2 protein 99.3 3E-12 1E-16 132.6 9.4 128 155-339 33-160 (220)
24 2z66_A Variable lymphocyte rec 99.3 1.9E-12 6.3E-17 139.8 8.1 171 154-339 28-207 (306)
25 4fmz_A Internalin; leucine ric 99.3 8.7E-12 3E-16 136.7 13.3 162 154-339 155-319 (347)
26 1xku_A Decorin; proteoglycan, 99.3 7E-12 2.4E-16 136.9 12.4 174 155-339 53-248 (330)
27 3m19_A Variable lymphocyte rec 99.3 5.2E-12 1.8E-16 132.9 10.6 148 156-339 16-163 (251)
28 2ast_B S-phase kinase-associat 99.3 2.5E-12 8.6E-17 140.2 8.4 172 154-339 93-280 (336)
29 2o6q_A Variable lymphocyte rec 99.3 6E-12 2.1E-16 133.8 11.0 154 153-339 60-213 (270)
30 3zyi_A Leucine-rich repeat-con 99.3 2.2E-12 7.6E-17 147.4 8.2 172 153-339 122-298 (452)
31 2ell_A Acidic leucine-rich nuc 99.3 3E-12 1E-16 126.0 8.0 132 153-339 23-155 (168)
32 3v47_A TOLL-like receptor 5B a 99.3 1.2E-11 4.3E-16 140.4 14.2 59 275-339 297-355 (455)
33 2z66_A Variable lymphocyte rec 99.3 2.5E-12 8.5E-17 138.8 7.6 172 154-339 52-231 (306)
34 2o6s_A Variable lymphocyte rec 99.3 8.3E-12 2.8E-16 127.2 10.3 134 154-316 28-161 (208)
35 2ft3_A Biglycan; proteoglycan, 99.3 1.4E-11 4.8E-16 134.8 12.5 173 155-339 55-249 (332)
36 1p9a_G Platelet glycoprotein I 99.3 7.3E-12 2.5E-16 135.2 10.0 150 154-339 31-180 (290)
37 2id5_A Lingo-1, leucine rich r 99.3 6.5E-12 2.2E-16 144.1 10.1 153 154-339 32-184 (477)
38 4fmz_A Internalin; leucine ric 99.3 2.3E-11 8E-16 133.2 13.9 162 178-361 152-316 (347)
39 2ca6_A RAN GTPase-activating p 99.3 4.7E-12 1.6E-16 141.4 8.4 185 154-341 32-254 (386)
40 3e6j_A Variable lymphocyte rec 99.3 5.7E-12 1.9E-16 131.1 8.4 156 181-367 40-201 (229)
41 3zyj_A Leucine-rich repeat-con 99.3 8.7E-12 3E-16 142.0 10.3 172 153-339 111-287 (440)
42 1ogq_A PGIP-2, polygalacturona 99.3 9.8E-13 3.4E-17 143.3 2.3 146 179-339 99-252 (313)
43 3rgz_A Protein brassinosteroid 99.3 3.5E-12 1.2E-16 155.7 7.3 171 155-339 369-546 (768)
44 3goz_A Leucine-rich repeat-con 99.2 7.3E-12 2.5E-16 139.0 8.7 89 277-367 196-292 (362)
45 2z62_A TOLL-like receptor 4, v 99.2 1.3E-11 4.6E-16 131.2 10.3 137 154-319 28-165 (276)
46 2id5_A Lingo-1, leucine rich r 99.2 4.2E-12 1.5E-16 145.6 6.9 59 275-339 246-304 (477)
47 1ogq_A PGIP-2, polygalacturona 99.2 6.8E-12 2.3E-16 136.7 8.0 201 96-339 67-276 (313)
48 3o53_A Protein LRIM1, AGAP0063 99.2 2.2E-12 7.6E-17 140.5 4.0 127 180-339 119-245 (317)
49 4ezg_A Putative uncharacterize 99.2 1.8E-11 6.3E-16 123.9 10.1 145 154-339 44-189 (197)
50 1wwl_A Monocyte differentiatio 99.2 2.7E-11 9.3E-16 131.6 11.8 89 153-246 120-211 (312)
51 3goz_A Leucine-rich repeat-con 99.2 2.2E-11 7.4E-16 135.2 10.9 194 155-362 52-259 (362)
52 3oja_A Leucine-rich immune mol 99.2 5.5E-12 1.9E-16 146.1 6.0 127 180-339 119-245 (487)
53 1p9a_G Platelet glycoprotein I 99.2 2E-11 7E-16 131.7 10.1 150 153-339 54-203 (290)
54 2wfh_A SLIT homolog 2 protein 99.2 2.4E-11 8.2E-16 123.3 10.0 122 157-339 13-134 (193)
55 3vq2_A TLR4, TOLL-like recepto 99.2 2.9E-12 9.9E-17 151.2 3.3 172 154-339 350-529 (606)
56 1xeu_A Internalin C; cellular 99.2 3.7E-11 1.3E-15 127.8 11.5 140 154-339 41-180 (263)
57 2z7x_B TOLL-like receptor 1, v 99.2 4.6E-11 1.6E-15 138.4 13.3 154 153-339 323-476 (520)
58 1xku_A Decorin; proteoglycan, 99.2 5.2E-12 1.8E-16 137.9 4.9 203 93-339 63-271 (330)
59 3o6n_A APL1; leucine-rich repe 99.2 1.5E-11 5.3E-16 137.3 8.8 135 154-317 45-179 (390)
60 4g8a_A TOLL-like receptor 4; l 99.2 1.5E-11 5.1E-16 144.7 8.6 65 154-223 52-116 (635)
61 2xot_A Amphoterin-induced prot 99.2 1.5E-11 5.3E-16 136.6 8.2 131 155-339 40-171 (361)
62 3oja_A Leucine-rich immune mol 99.2 7.5E-12 2.6E-16 145.0 5.9 63 154-223 34-96 (487)
63 1wwl_A Monocyte differentiatio 99.2 1.2E-11 4.3E-16 134.3 7.3 168 153-339 94-282 (312)
64 1o6v_A Internalin A; bacterial 99.2 5.9E-11 2E-15 136.1 13.2 141 178-339 174-317 (466)
65 3oja_B Anopheles plasmodium-re 99.2 1.7E-11 5.7E-16 145.4 8.8 135 155-318 52-186 (597)
66 3v47_A TOLL-like receptor 5B a 99.2 2.8E-11 9.5E-16 137.5 10.1 129 181-339 275-403 (455)
67 4glp_A Monocyte differentiatio 99.2 2.8E-11 9.5E-16 131.3 9.7 170 156-339 93-280 (310)
68 1a9n_A U2A', U2A'; complex (nu 99.2 2.2E-11 7.4E-16 121.2 8.1 59 154-220 19-77 (176)
69 2ast_B S-phase kinase-associat 99.2 2.4E-11 8.2E-16 132.4 9.1 169 155-339 71-255 (336)
70 2v9t_B SLIT homolog 2 protein 99.2 2.8E-11 9.7E-16 125.2 9.0 123 157-339 14-136 (220)
71 2z81_A CD282 antigen, TOLL-lik 99.2 5.5E-11 1.9E-15 138.4 12.4 168 154-339 310-481 (549)
72 3t6q_A CD180 antigen; protein- 99.2 7.1E-12 2.4E-16 147.9 4.6 151 178-339 347-508 (606)
73 4glp_A Monocyte differentiatio 99.2 5.8E-11 2E-15 128.8 11.5 170 154-339 117-302 (310)
74 4eco_A Uncharacterized protein 99.2 2E-11 6.8E-16 146.0 8.3 246 93-362 194-463 (636)
75 1dce_A Protein (RAB geranylger 99.2 1.2E-11 4.1E-16 146.1 6.0 26 90-115 357-382 (567)
76 2ft3_A Biglycan; proteoglycan, 99.2 1.4E-11 4.6E-16 134.8 5.6 199 94-339 66-272 (332)
77 3bz5_A Internalin-J, INLJ; leu 99.2 7.9E-11 2.7E-15 135.4 12.2 154 154-339 64-220 (457)
78 1o6v_A Internalin A; bacterial 99.2 1.5E-10 5E-15 132.8 14.4 160 154-339 177-339 (466)
79 3e6j_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 123.7 9.8 123 183-339 21-143 (229)
80 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8.1E-16 123.0 6.6 124 157-339 11-134 (192)
81 2v70_A SLIT-2, SLIT homolog 2 99.2 3.1E-11 1.1E-15 124.9 7.6 124 157-339 14-137 (220)
82 1z7x_W Ribonuclease inhibitor; 99.2 1.9E-11 6.5E-16 139.0 6.5 182 155-339 86-292 (461)
83 3o53_A Protein LRIM1, AGAP0063 99.2 1.4E-11 4.9E-16 134.1 4.9 170 154-339 34-222 (317)
84 1a9n_A U2A', U2A'; complex (nu 99.2 3.1E-11 1.1E-15 120.1 6.9 134 177-367 15-151 (176)
85 2xwt_C Thyrotropin receptor; s 99.1 1.8E-11 6E-16 127.6 5.1 83 154-246 31-115 (239)
86 3t6q_A CD180 antigen; protein- 99.1 4.6E-11 1.6E-15 141.0 9.2 173 153-339 349-531 (606)
87 1ziw_A TOLL-like receptor 3; i 99.1 8.5E-11 2.9E-15 140.8 11.5 164 154-339 405-592 (680)
88 3bz5_A Internalin-J, INLJ; leu 99.1 1.4E-10 4.9E-15 133.2 12.8 156 153-339 84-241 (457)
89 2z62_A TOLL-like receptor 4, v 99.1 5.2E-11 1.8E-15 126.6 8.1 137 154-318 52-192 (276)
90 2z63_A TOLL-like receptor 4, v 99.1 3.2E-11 1.1E-15 140.7 6.9 150 178-339 344-502 (570)
91 2z7x_B TOLL-like receptor 1, v 99.1 7.1E-11 2.4E-15 136.8 9.7 62 274-339 321-382 (520)
92 1z7x_W Ribonuclease inhibitor; 99.1 2.8E-11 9.7E-16 137.5 6.1 211 155-367 200-438 (461)
93 2o6s_A Variable lymphocyte rec 99.1 1.2E-10 4E-15 118.7 9.8 146 158-339 11-156 (208)
94 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.2E-10 4.2E-15 136.6 11.4 42 179-220 375-416 (562)
95 1h6t_A Internalin B; cell adhe 99.1 9.9E-11 3.4E-15 126.3 9.5 141 154-339 46-186 (291)
96 2je0_A Acidic leucine-rich nuc 99.1 2.7E-11 9.3E-16 116.7 4.6 132 179-365 15-149 (149)
97 2z81_A CD282 antigen, TOLL-lik 99.1 6.5E-11 2.2E-15 137.8 8.4 84 154-247 26-109 (549)
98 2o6r_A Variable lymphocyte rec 99.1 1.3E-10 4.4E-15 115.4 9.2 123 157-339 10-132 (177)
99 3vq2_A TLR4, TOLL-like recepto 99.1 5E-11 1.7E-15 140.6 7.1 150 178-339 347-505 (606)
100 1w8a_A SLIT protein; signaling 99.1 9.1E-11 3.1E-15 118.6 7.9 111 155-317 30-140 (192)
101 1m9s_A Internalin B; cell inva 99.1 1E-10 3.5E-15 139.1 9.5 141 178-339 40-183 (605)
102 2xwt_C Thyrotropin receptor; s 99.1 2.2E-11 7.6E-16 126.8 2.9 152 153-339 54-213 (239)
103 2xot_A Amphoterin-induced prot 99.1 1.3E-10 4.4E-15 129.1 9.1 123 157-339 21-144 (361)
104 4ecn_A Leucine-rich repeat pro 99.1 1.9E-10 6.5E-15 142.0 11.2 225 93-339 436-681 (876)
105 4g8a_A TOLL-like receptor 4; l 99.1 8.7E-11 3E-15 138.1 7.7 130 181-339 52-181 (635)
106 3un9_A NLR family member X1; l 99.1 6.7E-11 2.3E-15 132.5 6.2 186 154-356 72-263 (372)
107 1ziw_A TOLL-like receptor 3; i 99.1 1.5E-10 5.3E-15 138.5 9.7 151 181-339 381-544 (680)
108 4ecn_A Leucine-rich repeat pro 99.1 6.2E-11 2.1E-15 146.4 5.7 93 96-220 532-632 (876)
109 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.6E-10 5.6E-15 135.5 8.7 62 274-339 350-411 (562)
110 2ell_A Acidic leucine-rich nuc 99.1 1.2E-10 4.1E-15 114.5 6.3 136 178-367 21-158 (168)
111 2z63_A TOLL-like receptor 4, v 99.0 1.4E-10 4.8E-15 135.3 7.3 173 153-339 346-526 (570)
112 2z80_A TOLL-like receptor 2, v 99.0 1.3E-10 4.3E-15 128.2 6.2 185 158-362 35-228 (353)
113 1xeu_A Internalin C; cellular 99.0 3.4E-10 1.2E-14 120.4 9.3 138 156-339 21-158 (263)
114 4ezg_A Putative uncharacterize 99.0 2.5E-10 8.4E-15 115.6 7.6 146 178-362 41-187 (197)
115 4eco_A Uncharacterized protein 99.0 2.1E-10 7.1E-15 137.2 8.1 62 154-222 353-417 (636)
116 3g06_A SSPH2 (leucine-rich rep 99.0 4.1E-10 1.4E-14 134.3 10.5 55 153-220 80-134 (622)
117 2wfh_A SLIT homolog 2 protein 99.0 3.8E-10 1.3E-14 114.4 8.1 110 154-317 31-140 (193)
118 3g39_A Variable lymphocyte rec 99.0 5.1E-10 1.7E-14 111.0 8.4 106 157-318 12-117 (170)
119 3j0a_A TOLL-like receptor 5; m 99.0 5.3E-10 1.8E-14 137.9 10.4 175 154-339 97-322 (844)
120 3g06_A SSPH2 (leucine-rich rep 99.0 1.4E-10 4.9E-15 138.3 4.8 50 276-339 220-269 (622)
121 1ds9_A Outer arm dynein; leuci 99.0 6.3E-12 2.2E-16 127.5 -6.4 157 155-369 19-187 (198)
122 2o6r_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 109.8 8.2 111 154-317 28-138 (177)
123 2r9u_A Variable lymphocyte rec 98.9 8.5E-10 2.9E-14 110.0 7.6 106 157-318 15-120 (174)
124 1jl5_A Outer protein YOPM; leu 98.9 3.2E-09 1.1E-13 121.9 11.5 134 181-339 131-265 (454)
125 1jl5_A Outer protein YOPM; leu 98.9 2.5E-09 8.4E-14 122.8 10.3 202 91-339 20-223 (454)
126 3cvr_A Invasion plasmid antige 98.9 4.1E-09 1.4E-13 124.5 12.1 57 275-339 158-215 (571)
127 3cvr_A Invasion plasmid antige 98.9 3.3E-09 1.1E-13 125.2 10.8 129 155-339 60-188 (571)
128 3g39_A Variable lymphocyte rec 98.9 2.1E-09 7.1E-14 106.6 6.9 101 182-339 10-110 (170)
129 1dce_A Protein (RAB geranylger 98.9 1.8E-09 6.1E-14 127.5 7.4 57 276-339 485-541 (567)
130 3j0a_A TOLL-like receptor 5; m 98.9 2.8E-09 9.6E-14 131.4 9.1 167 154-339 266-434 (844)
131 3ogk_B Coronatine-insensitive 98.9 8.5E-09 2.9E-13 120.9 12.8 196 156-362 140-348 (592)
132 4b8c_D Glucose-repressible alc 98.8 3E-09 1E-13 129.3 8.3 137 153-319 190-332 (727)
133 2r9u_A Variable lymphocyte rec 98.8 2.9E-09 9.9E-14 106.1 6.7 100 183-339 14-113 (174)
134 4b8c_D Glucose-repressible alc 98.8 2E-09 6.8E-14 130.8 6.5 144 155-339 174-324 (727)
135 4ay9_X Follicle-stimulating ho 98.8 4.5E-09 1.5E-13 116.0 5.9 166 155-339 31-210 (350)
136 2p1m_B Transport inhibitor res 98.7 3.6E-09 1.2E-13 124.0 4.9 200 154-362 105-344 (594)
137 4ay9_X Follicle-stimulating ho 98.7 3.2E-09 1.1E-13 117.2 3.4 169 153-339 53-231 (350)
138 3ogk_B Coronatine-insensitive 98.7 1.1E-08 3.8E-13 119.9 8.2 175 154-341 318-523 (592)
139 1ds9_A Outer arm dynein; leuci 98.7 2E-10 6.9E-15 116.4 -6.0 128 154-339 48-182 (198)
140 2ifg_A High affinity nerve gro 98.7 2.4E-08 8.3E-13 109.5 7.7 89 178-317 28-117 (347)
141 2ifg_A High affinity nerve gro 98.7 2.2E-08 7.6E-13 109.8 7.0 99 184-339 11-111 (347)
142 2p1m_B Transport inhibitor res 98.6 1.4E-08 4.9E-13 118.9 5.7 81 275-361 287-377 (594)
143 3un9_A NLR family member X1; l 98.6 1.8E-08 6E-13 112.8 6.0 154 154-325 101-261 (372)
144 3sb4_A Hypothetical leucine ri 98.6 4.8E-08 1.6E-12 106.7 7.1 193 153-362 48-327 (329)
145 1io0_A Tropomodulin; LRR prote 98.6 6.4E-08 2.2E-12 97.4 7.1 39 301-339 119-159 (185)
146 3rw6_A Nuclear RNA export fact 98.5 1.4E-07 4.8E-12 100.8 7.5 119 180-367 140-262 (267)
147 1iow_A DD-ligase, DDLB, D-ALA\ 98.5 6.5E-07 2.2E-11 96.3 11.9 176 601-833 93-280 (306)
148 1io0_A Tropomodulin; LRR prote 98.4 2.3E-07 7.8E-12 93.3 7.2 135 134-317 21-165 (185)
149 2i87_A D-alanine-D-alanine lig 98.4 2E-06 6.9E-11 95.6 15.3 180 602-834 127-317 (364)
150 3sb4_A Hypothetical leucine ri 98.4 1.5E-07 5.1E-12 102.8 5.2 188 155-362 26-303 (329)
151 4eg0_A D-alanine--D-alanine li 98.4 2.4E-06 8.3E-11 93.0 13.6 180 602-836 105-292 (317)
152 1e4e_A Vancomycin/teicoplanin 98.3 4.3E-06 1.5E-10 92.1 14.3 179 602-834 130-316 (343)
153 3se7_A VANA; alpha-beta struct 98.3 6.2E-06 2.1E-10 91.0 14.8 179 602-836 130-318 (346)
154 4fu0_A D-alanine--D-alanine li 98.3 4.1E-06 1.4E-10 93.0 13.1 143 648-836 177-325 (357)
155 3rw6_A Nuclear RNA export fact 98.3 2.9E-07 1E-11 98.3 3.5 45 178-222 167-211 (267)
156 2q7d_A Inositol-tetrakisphosph 98.2 1.1E-05 3.8E-10 89.3 15.5 245 547-836 35-319 (346)
157 3i12_A D-alanine-D-alanine lig 98.2 2.2E-05 7.4E-10 87.4 17.8 179 603-836 139-328 (364)
158 2ra8_A Uncharacterized protein 98.2 4.3E-07 1.5E-11 101.3 3.4 173 155-348 140-323 (362)
159 3tqt_A D-alanine--D-alanine li 98.2 8.7E-06 3E-10 91.0 14.0 142 649-836 180-329 (372)
160 1uc8_A LYSX, lysine biosynthes 98.2 7.9E-07 2.7E-11 94.1 5.3 90 600-706 84-184 (280)
161 3e5n_A D-alanine-D-alanine lig 98.2 1E-05 3.5E-10 90.9 14.3 178 603-836 158-347 (386)
162 1i7n_A Synapsin II; synapse, p 98.2 1.5E-05 5E-10 86.8 14.6 126 648-832 152-286 (309)
163 1ehi_A LMDDL2, D-alanine:D-lac 98.1 3.5E-05 1.2E-09 86.1 17.1 183 602-835 133-328 (377)
164 1z2n_X Inositol 1,3,4-trisphos 98.1 5.9E-06 2E-10 89.8 10.1 98 592-706 86-188 (324)
165 3r5x_A D-alanine--D-alanine li 98.1 2.1E-05 7.3E-10 84.7 14.0 172 602-836 95-276 (307)
166 2r85_A PURP protein PF1517; AT 98.1 1.4E-05 4.8E-10 86.9 12.4 175 601-831 97-291 (334)
167 3ax6_A Phosphoribosylaminoimid 98.1 1.9E-05 6.5E-10 88.0 13.3 168 601-832 97-266 (380)
168 3k3p_A D-alanine--D-alanine li 98.0 1.8E-05 6.1E-10 88.9 12.0 181 603-836 160-349 (383)
169 2p0a_A Synapsin-3, synapsin II 98.0 1.9E-05 6.6E-10 87.0 11.8 171 592-832 118-303 (344)
170 3q2o_A Phosphoribosylaminoimid 98.0 8.8E-05 3E-09 83.0 17.3 165 602-831 110-282 (389)
171 2fb9_A D-alanine:D-alanine lig 98.0 1.9E-05 6.4E-10 86.3 11.1 175 602-834 116-296 (322)
172 1pk8_A RAT synapsin I; ATP bin 98.0 2.4E-05 8.3E-10 87.9 11.9 126 648-832 264-398 (422)
173 4dim_A Phosphoribosylglycinami 98.0 8.1E-05 2.8E-09 83.4 16.0 88 601-705 106-202 (403)
174 3vot_A L-amino acid ligase, BL 97.9 0.00015 5.1E-09 82.0 16.7 85 602-703 110-210 (425)
175 2ip4_A PURD, phosphoribosylami 97.9 0.00015 5.2E-09 81.8 16.2 88 601-707 98-194 (417)
176 3k5i_A Phosphoribosyl-aminoimi 97.9 0.0001 3.4E-09 83.2 14.3 167 602-831 121-295 (403)
177 1ulz_A Pyruvate carboxylase N- 97.8 0.00023 7.7E-09 81.2 16.4 169 601-830 111-294 (451)
178 3lwb_A D-alanine--D-alanine li 97.8 4.1E-05 1.4E-09 85.6 9.7 183 602-836 149-343 (373)
179 2yw2_A Phosphoribosylamine--gl 97.8 0.00018 6E-09 81.3 14.9 78 601-689 99-189 (424)
180 1kjq_A GART 2, phosphoribosylg 97.8 0.00031 1.1E-08 78.2 16.7 166 601-831 109-286 (391)
181 4fdw_A Leucine rich hypothetic 97.8 2.4E-05 8.2E-10 88.2 7.4 146 176-338 175-330 (401)
182 3aw8_A PURK, phosphoribosylami 97.8 0.00037 1.3E-08 77.2 16.7 169 601-832 93-267 (369)
183 4fdw_A Leucine rich hypothetic 97.7 4.7E-05 1.6E-09 85.8 8.4 184 155-361 136-328 (401)
184 2yrx_A Phosphoribosylglycinami 97.7 0.00025 8.7E-09 80.9 14.4 87 602-707 121-220 (451)
185 3ouz_A Biotin carboxylase; str 97.7 0.00036 1.2E-08 79.5 15.5 169 601-830 116-299 (446)
186 2vpq_A Acetyl-COA carboxylase; 97.7 0.00047 1.6E-08 78.5 16.5 170 601-831 111-296 (451)
187 2pvp_A D-alanine-D-alanine lig 97.7 0.0001 3.6E-09 82.1 10.6 176 602-834 147-331 (367)
188 2xcl_A Phosphoribosylamine--gl 97.7 0.00024 8.1E-09 80.2 13.5 88 601-707 99-199 (422)
189 2ra8_A Uncharacterized protein 97.7 1.2E-05 4.1E-10 89.6 2.6 166 177-367 135-315 (362)
190 1gsa_A Glutathione synthetase; 97.7 0.00017 5.8E-09 77.3 11.5 72 621-706 134-214 (316)
191 4e4t_A Phosphoribosylaminoimid 97.7 0.00044 1.5E-08 78.4 15.5 172 602-830 131-306 (419)
192 3lp8_A Phosphoribosylamine-gly 97.7 0.00087 3E-08 76.5 18.0 78 601-689 120-210 (442)
193 3e4g_A ATP synthase subunit S, 97.7 6.1E-05 2.1E-09 75.3 7.1 35 182-218 62-96 (176)
194 3orq_A N5-carboxyaminoimidazol 97.7 0.00054 1.8E-08 76.4 15.5 87 602-706 108-200 (377)
195 2dwc_A PH0318, 433AA long hypo 97.6 0.00053 1.8E-08 77.7 15.5 169 601-831 117-299 (433)
196 2z04_A Phosphoribosylaminoimid 97.6 0.00016 5.4E-09 80.0 10.3 90 601-708 89-184 (365)
197 2qk4_A Trifunctional purine bi 97.6 0.00064 2.2E-08 77.5 15.0 88 601-707 125-226 (452)
198 2w70_A Biotin carboxylase; lig 97.6 0.00096 3.3E-08 75.9 16.2 168 601-830 112-295 (449)
199 3mjf_A Phosphoribosylamine--gl 97.5 0.001 3.5E-08 75.6 15.9 88 601-707 104-204 (431)
200 1vkz_A Phosphoribosylamine--gl 97.5 0.0012 4.1E-08 74.4 15.7 176 602-831 104-293 (412)
201 3ln6_A Glutathione biosynthesi 97.5 0.00032 1.1E-08 85.0 11.2 85 604-706 484-578 (750)
202 3vmm_A Alanine-anticapsin liga 97.4 0.00084 2.9E-08 77.3 13.5 80 601-691 136-234 (474)
203 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00037 1.3E-08 70.8 8.5 38 302-339 125-165 (197)
204 3df7_A Putative ATP-grAsp supe 97.4 0.00048 1.7E-08 74.6 10.0 70 601-707 107-176 (305)
205 2pn1_A Carbamoylphosphate synt 97.3 0.00051 1.7E-08 74.6 9.7 80 601-689 111-191 (331)
206 1pgv_A TMD-1, tropomodulin TMD 97.3 0.0003 1E-08 71.5 7.3 134 134-316 26-170 (197)
207 3glk_A Acetyl-COA carboxylase 97.3 0.0019 6.6E-08 75.5 14.6 133 649-831 229-368 (540)
208 3jrx_A Acetyl-COA carboxylase 97.3 0.0022 7.7E-08 75.5 14.7 133 649-831 245-384 (587)
209 2dzd_A Pyruvate carboxylase; b 97.3 0.003 1E-07 72.1 15.4 89 601-707 117-220 (461)
210 3ln7_A Glutathione biosynthesi 97.1 0.0029 9.9E-08 76.6 14.4 89 602-706 487-584 (757)
211 3e4g_A ATP synthase subunit S, 97.1 0.00055 1.9E-08 68.4 6.6 88 276-369 60-152 (176)
212 1w96_A ACC, acetyl-coenzyme A 97.1 0.0045 1.5E-07 72.6 15.1 42 649-690 235-283 (554)
213 1a9x_A Carbamoyl phosphate syn 97.0 0.0079 2.7E-07 76.0 17.4 78 602-690 672-758 (1073)
214 3eth_A Phosphoribosylaminoimid 97.0 0.008 2.7E-07 66.5 14.6 84 594-689 66-157 (355)
215 3u9t_A MCC alpha, methylcroton 96.9 0.0019 6.6E-08 77.5 9.7 169 601-830 138-321 (675)
216 3n6r_A Propionyl-COA carboxyla 96.8 0.0013 4.3E-08 79.2 7.0 89 601-707 112-215 (681)
217 1a9x_A Carbamoyl phosphate syn 96.7 0.024 8.1E-07 71.7 17.3 88 602-707 126-222 (1073)
218 3n6x_A Putative glutathionylsp 96.6 0.0018 6.1E-08 74.0 5.8 123 592-729 309-453 (474)
219 3hbl_A Pyruvate carboxylase; T 96.3 0.013 4.5E-07 74.2 12.0 80 601-691 115-209 (1150)
220 2r7k_A 5-formaminoimidazole-4- 96.0 0.019 6.6E-07 63.6 10.2 142 649-830 151-317 (361)
221 2qf7_A Pyruvate carboxylase pr 95.9 0.021 7.1E-07 72.5 11.0 170 601-831 131-316 (1165)
222 3va7_A KLLA0E08119P; carboxyla 95.9 0.024 8.1E-07 72.2 11.3 90 602-708 142-244 (1236)
223 3rfe_A Platelet glycoprotein I 95.6 0.011 3.9E-07 55.6 5.0 40 276-317 30-69 (130)
224 4gt6_A Cell surface protein; l 95.4 0.049 1.7E-06 60.4 10.4 77 276-362 287-363 (394)
225 4fs7_A Uncharacterized protein 95.3 0.019 6.4E-07 63.8 6.5 55 276-338 319-373 (394)
226 4ffl_A PYLC; amino acid, biosy 95.0 0.065 2.2E-06 58.8 9.6 39 649-689 126-164 (363)
227 4fs7_A Uncharacterized protein 94.9 0.023 8E-07 63.0 5.9 145 177-339 67-216 (394)
228 2f69_A Histone-lysine N-methyl 94.9 0.019 6.4E-07 60.8 4.8 67 428-500 185-251 (261)
229 2cqy_A Propionyl-COA carboxyla 94.3 0.045 1.5E-06 48.8 5.1 43 649-691 46-99 (108)
230 2pbz_A Hypothetical protein; N 94.0 0.031 1.1E-06 60.9 4.0 41 648-689 125-167 (320)
231 3t7a_A Inositol pyrophosphate 93.7 0.069 2.4E-06 57.4 5.9 109 589-706 82-216 (330)
232 4h09_A Hypothetical leucine ri 93.5 0.056 1.9E-06 59.3 5.1 127 177-338 213-340 (379)
233 4gt6_A Cell surface protein; l 93.4 0.1 3.6E-06 57.7 7.1 56 276-339 310-365 (394)
234 3f9x_A Histone-lysine N-methyl 93.4 0.076 2.6E-06 51.9 5.2 50 429-485 107-156 (166)
235 3rfe_A Platelet glycoprotein I 93.0 0.097 3.3E-06 49.2 5.1 51 280-339 11-63 (130)
236 1n3j_A A612L, histone H3 lysin 92.9 0.043 1.5E-06 50.8 2.6 47 428-483 63-109 (119)
237 4h09_A Hypothetical leucine ri 92.7 0.15 5.1E-06 55.9 7.0 148 178-362 191-339 (379)
238 3ope_A Probable histone-lysine 90.8 0.23 7.8E-06 51.1 5.3 48 428-482 145-192 (222)
239 3rq4_A Histone-lysine N-methyl 90.7 0.27 9.1E-06 51.5 5.8 53 428-490 175-227 (247)
240 2w5y_A Histone-lysine N-methyl 90.0 0.29 1E-05 49.2 5.2 49 428-483 123-171 (192)
241 3ooi_A Histone-lysine N-methyl 89.8 0.38 1.3E-05 49.8 6.0 49 428-483 164-212 (232)
242 3h6l_A Histone-lysine N-methyl 89.0 0.37 1.3E-05 51.3 5.3 48 428-482 189-236 (278)
243 2io8_A Bifunctional glutathion 88.6 0.19 6.4E-06 59.5 2.9 102 601-729 494-603 (619)
244 1h3i_A Histone H3 lysine 4 spe 88.3 0.33 1.1E-05 51.9 4.5 50 428-483 239-288 (293)
245 1mvh_A Cryptic LOCI regulator 87.4 0.52 1.8E-05 50.7 5.3 53 428-483 212-264 (299)
246 3qwp_A SET and MYND domain-con 86.5 0.55 1.9E-05 53.0 5.1 82 397-494 174-255 (429)
247 3s8p_A Histone-lysine N-methyl 86.5 0.63 2.1E-05 49.3 5.1 48 428-485 204-251 (273)
248 2vob_A Trypanothione synthetas 86.4 0.45 1.5E-05 56.5 4.5 81 601-696 509-593 (652)
249 3bo5_A Histone-lysine N-methyl 86.4 0.57 2E-05 50.2 4.9 50 428-483 204-253 (290)
250 1ml9_A Histone H3 methyltransf 86.4 0.43 1.5E-05 51.4 3.9 53 428-483 219-271 (302)
251 3qww_A SET and MYND domain-con 85.5 0.52 1.8E-05 53.4 4.2 61 426-497 198-259 (433)
252 2r3a_A Histone-lysine N-methyl 84.9 0.64 2.2E-05 50.0 4.4 52 428-482 214-265 (300)
253 3n71_A Histone lysine methyltr 84.9 0.46 1.6E-05 54.7 3.5 84 406-494 179-267 (490)
254 3hna_A Histone-lysine N-methyl 84.8 0.76 2.6E-05 49.1 4.9 51 428-481 215-265 (287)
255 2qpw_A PR domain zinc finger p 80.6 1.6 5.6E-05 41.9 5.0 48 423-481 86-143 (149)
256 1wr2_A Hypothetical protein PH 28.2 25 0.00085 35.8 2.3 41 649-689 57-117 (238)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=2.4e-57 Score=503.56 Aligned_cols=296 Identities=21% Similarity=0.289 Sum_probs=226.8
Q ss_pred cChHHHHHHHHcCC-cEEeC-CCCCceEEEeccCCcchHHhhhCC-CCCcEEccccCCCcccccHHHHHHHHHhc---CC
Q 002880 545 TDIPYVEEFLTRTE-FVITT-EPKDADIIWTSLQVDEDMKTATGI-TDQQYVNQFPFESCLVMKHHLAETVQKAH---GS 618 (871)
Q Consensus 545 ~d~~~V~~~L~~~g-f~~~~-~~~~~di~W~~~~~~~~~~~~~~l-~~~q~vN~fP~~~~lt~K~~L~~~l~~~~---g~ 618 (871)
|.|+.|+++|++.| |..+. +..+|||+|++.+.. .|..+... .+.|+||||||++.||||+.|+++++++. ..
T Consensus 15 svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~-p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~~~~~~ 93 (380)
T 3tig_A 15 TVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRL-PFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTET 93 (380)
T ss_dssp HHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSC-CGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCHHHHTT
T ss_pred cHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCC-CHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhhhcccc
Confidence 57889999999999 98775 467899999988764 35444333 57899999999999999999999998842 35
Q ss_pred CCcccceecc-CC-----------------------ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHH
Q 002880 619 PEWLQPTYNL-ET-----------------------HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVI 674 (871)
Q Consensus 619 ~~~lP~Tf~L-~~-----------------------el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~ 674 (871)
.+|+|+||.| |. |+.+|+++|.+++..+.++.||+||++++||+||.++++++++.
T Consensus 94 ~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~i~ 173 (380)
T 3tig_A 94 CTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELL 173 (380)
T ss_dssp CTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHHHH
T ss_pred cCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHHHH
Confidence 7899999999 65 56789999988777889999999999999999999999999998
Q ss_pred HHhc--cCCccccccccccccc--CCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccc
Q 002880 675 RLME--TGPKICQKYIEFPALF--QGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYG 750 (871)
Q Consensus 675 ~~~~--~~~~IvQkYI~~PlLi--~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~ 750 (871)
+..+ ..++||||||++|+|| +|||||||+|||||| ||++|+|++|++|||+.+|+.++ +++.++||||..++
T Consensus 174 ~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~~~--~~~~~~HLTN~~iq 249 (380)
T 3tig_A 174 DFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTN--FQDMTSHLTNHCIQ 249 (380)
T ss_dssp HHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC-----------------------
T ss_pred HHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCccc--hhhhhhhccccccc
Confidence 7754 5789999999999999 999999999999998 99999999999999999999864 78899999987655
Q ss_pred cC----------CCCCCChhhHHHHHHhccchHH-HHHHHHHHHHHHHHHHHHhhCCCC-CCCCcEEEEeeeEEEcCCCc
Q 002880 751 RR----------FNHMNTPDFVRGFEAEHQVKWL-EIHQRVKNTIRSVFEAAAVAHPEM-HSSKSRAMYGVDIMLDSSFQ 818 (871)
Q Consensus 751 ~~----------~~~~~~~df~~~~~~~~~~~w~-~I~~~I~~~i~~~~~a~~~~~~~~-~~~~~fel~G~D~mlD~~~k 818 (871)
+. .+.+..++|.+.+++.++..|. .|+++|++++++++.|++...... ...+|||+||+|||||++++
T Consensus 250 k~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~ 329 (380)
T 3tig_A 250 KEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLK 329 (380)
T ss_dssp -------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCC
T ss_pred cccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCCCc
Confidence 42 1223345677777766777774 799999999999999987654332 24579999999999999999
Q ss_pred eEEEEecCCCCCCccccccccccccccccccccchhhhhhh
Q 002880 819 PKLLEVTYCPDCTRACKYDTEALVTGEVVKGADFFNYVFGC 859 (871)
Q Consensus 819 pwLLEVN~~P~l~~~~~~~~~~~~~~~~~~~p~f~n~~f~~ 859 (871)
|||||||++|++.+. +. |++++++|+.
T Consensus 330 ~wllEVN~~P~~~q~--~i------------~~l~~~~~~i 356 (380)
T 3tig_A 330 VWLIEVNGAPACAQK--LY------------AELCKGIVDL 356 (380)
T ss_dssp EEEEEEESSCCCCTT--TH------------HHHHHHHHHH
T ss_pred EEEEEEeCCCCccHH--hH------------HHHHHHHHHH
Confidence 999999999999752 32 7788888875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.43 E-value=4.3e-14 Score=172.59 Aligned_cols=203 Identities=21% Similarity=0.184 Sum_probs=137.5
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|.... ......+++|+.|+|++|+++. .+|..++++++|+.|+|++|++.+..+.. ..
T Consensus 466 ~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-----l~ 535 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEI---PSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAE-----LG 535 (768)
T ss_dssp TTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECCGG-----GG
T ss_pred CCceEEEecCCcccCcC---CHHHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCCHH-----Hc
Confidence 45778888888776522 1224567888888888888873 25667888888888888888886654322 34
Q ss_pred cCCCccccccccc---ccccccccccccccc----------------------------------------------CCC
Q 002880 234 GCPKLEIYNSNFT---INFGEWALGFCGEVY----------------------------------------------DKD 264 (871)
Q Consensus 234 ~lp~Le~lnl~~t---~~~~~~~l~~~~~~~----------------------------------------------~~~ 264 (871)
.+++|+.++++.+ |..+... ..+.... ..+
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAM-FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGG-GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCEEECCCCccCCcCChHH-hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 6777777776544 3332211 1110000 000
Q ss_pred CCCC-----ccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 265 NPSS-----LCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 265 ~~~~-----i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
...+ +......+++|+.||||+|.++|.+|..++ .+++|+.|+|++|+|++ .||..++++++|++|+|+
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g----~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHNDISG----SIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG--GCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECC
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHh--ccccCCEEeCcCCccCC----CCChHHhCCCCCCEEECC
Confidence 0001 111223467899999999999999999998 89999999999999998 677889999999999998
Q ss_pred CCCCCCchhhHHhhhCCCcccccCcccchhhcccccccccccCCCCCC
Q 002880 340 IPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPE 387 (871)
Q Consensus 340 iP~~l~~~~~~Il~~L~~L~~Ln~~~vs~~~~~~~~~~~~~l~~~~~~ 387 (871)
-. ...+.||..+.+|+.|..++++ .+.+.+.+|+
T Consensus 689 ~N----~l~g~ip~~l~~l~~L~~L~ls----------~N~l~g~iP~ 722 (768)
T 3rgz_A 689 SN----KLDGRIPQAMSALTMLTEIDLS----------NNNLSGPIPE 722 (768)
T ss_dssp SS----CCEECCCGGGGGCCCCSEEECC----------SSEEEEECCS
T ss_pred CC----cccCcCChHHhCCCCCCEEECc----------CCcccccCCC
Confidence 22 1234566677777777777777 4556666664
No 3
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=4.3e-13 Score=144.83 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=57.9
Q ss_pred CcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee---CCCCCCchhhH
Q 002880 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD---IPGPLGESAIE 350 (871)
Q Consensus 274 ~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~---iP~~l~~~~~~ 350 (871)
..+++|+.|+|++|.|+++.+ +. .+++|+.|+|++|.|++++ .+.++++|+.|+++ +-. .+.....
T Consensus 153 ~~l~~L~~L~L~~N~l~~~~~--l~--~l~~L~~L~L~~N~i~~l~------~l~~l~~L~~L~l~~n~i~~-~~~~~~~ 221 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDIVP--LA--GLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLN-KPINHQS 221 (291)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCBCG------GGTTCTTCSEEEEEEEEEEC-CCEECCS
T ss_pred ccCCCCCEEEccCCccccchh--hc--CCCccCEEECCCCcCCCCh------hhccCCCCCEEECcCCcccC-Ccccccc
Confidence 347789999999999998865 55 7899999999999998754 37889999999998 111 1111111
Q ss_pred HhhhCCCcccccCcccc
Q 002880 351 ILESLPTLCTLNGVTAS 367 (871)
Q Consensus 351 Il~~L~~L~~Ln~~~vs 367 (871)
.+..++.++.++|..++
T Consensus 222 ~l~~~~~l~~l~~~~i~ 238 (291)
T 1h6t_A 222 NLVVPNTVKNTDGSLVT 238 (291)
T ss_dssp EEEEECCCBCTTSCBCC
T ss_pred ccEEcceEECCCCCCcC
Confidence 23344566777777766
No 4
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=8.3e-13 Score=138.98 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=100.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|..... .....+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+.. ...+.
T Consensus 35 ~~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSD---ATFRGLTKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANNQLASLP-----LGVFD 104 (251)
T ss_dssp TTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCC-----TTTTT
T ss_pred CCCCEEEccCCCcCccCH---hHhcCcccCCEEECCCCcCCccC--HhHhccCCcCCEEECCCCcccccC-----hhHhc
Confidence 357788888888876322 23456788888888888888642 355788888888888888886544 22334
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+... ..+... ...+++|+.|+|++|.|+++++..|. .+++|+.|+|++|
T Consensus 105 ~l~~L~~L~L~~N~l~--------------~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N 165 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLK--------------SLPSGV---FDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTN 165 (251)
T ss_dssp TCTTCCEEECCSSCCC--------------CCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred ccCCCCEEEcCCCcCC--------------CcChhH---hccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCC
Confidence 5677777666544211 111110 12366777778888877777666666 6777778888887
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|.+++. ..+.++++|+.|+++
T Consensus 166 ~l~~~~~----~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 166 QLQSVPH----GAFDRLGKLQTITLF 187 (251)
T ss_dssp CCSCCCT----TTTTTCTTCCEEECC
T ss_pred cCCccCH----HHHhCCCCCCEEEee
Confidence 7776553 245667777777776
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=1.6e-12 Score=138.54 Aligned_cols=149 Identities=20% Similarity=0.263 Sum_probs=104.9
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|.+++|+|.+.. ....+++|+.|+|++|+|+.+ ..+.++++|+.|+|++|.+.+.. ...+.
T Consensus 41 ~~L~~L~l~~~~i~~~~-----~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~ 106 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-----GIQYLPNVRYLALGGNKLHDI----SALKELTNLTYLILTGNQLQSLP-----NGVFD 106 (272)
T ss_dssp TTCCEEECTTSCCCCCT-----TGGGCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECTTSCCCCCC-----TTTTT
T ss_pred cceeeeeeCCCCccccc-----ccccCCCCcEEECCCCCCCCc----hhhcCCCCCCEEECCCCccCccC-----hhHhc
Confidence 45888999999887532 245689999999999999875 36889999999999999987654 33345
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+...+. +.. ....+++|+.|+|++|.|+++++..+. .+++|+.|+|++|
T Consensus 107 ~l~~L~~L~L~~n~l~~~--------------~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n 167 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSL--------------PDG---VFDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSYN 167 (272)
T ss_dssp TCTTCCEEECTTSCCCCC--------------CTT---TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred CCcCCCEEECCCCcCCcc--------------CHH---HhccCCCCCEEECCCCccCccCHHHhc--cCccCCEEECCCC
Confidence 678888888765532211 100 012366777777777777777666666 6777777777777
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|.+++. ..++++++|+.|+++
T Consensus 168 ~l~~~~~----~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 168 QLQSLPE----GVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCCCCCT----TTTTTCTTCCEEECC
T ss_pred CcCccCH----HHhcCCccCCEEECC
Confidence 7776543 245677777777777
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=8.3e-13 Score=150.44 Aligned_cols=170 Identities=18% Similarity=0.223 Sum_probs=120.3
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+... ......+++|+.|+|++|+|+.+. +..+..+++|+.|+|++|.+.... ...+.
T Consensus 88 ~~L~~L~Ls~n~i~~i~---~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~ 157 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIE---IGAFNGLANLNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIP-----SYAFN 157 (440)
T ss_dssp SSCCEEECCSSCCCEEC---GGGGTTCSSCCEEECCSSCCSSCC--TTTSCSCSSCCEEECCSCCCCEEC-----TTTTT
T ss_pred CCCCEEECCCCcCCccC---hhhccCCccCCEEECCCCcCCeeC--HhHhhccccCceeeCCCCcccccC-----HHHhh
Confidence 56888999999887632 234567889999999999988653 246788899999999999886544 23345
Q ss_pred cCCCccccccccccc---cccccccccccccCCCCCCCccc---cCCcCCccceeecCCccccccccccCCCCCCCCcce
Q 002880 234 GCPKLEIYNSNFTIN---FGEWALGFCGEVYDKDNPSSLCL---RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH 307 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~---~~~~~l~~~~~~~~~~~~~~i~~---~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~ 307 (871)
.+++|+.+++..+.. .+...+..+.++..+++.++-.. ....+++|+.|+|++|.|+++.|..|. .+++|+.
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~ 235 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQK 235 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTT--TCTTCCE
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhc--cCccCCE
Confidence 678888887765322 22223334444444444433222 234567888999999999988888887 7899999
Q ss_pred EeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 308 LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|++|+|.+++. ..+.++++|+.|+|+
T Consensus 236 L~L~~n~l~~~~~----~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 236 LWMIQSQIQVIER----NAFDNLQSLVEINLA 263 (440)
T ss_dssp EECTTCCCCEECT----TSSTTCTTCCEEECT
T ss_pred EECCCCceeEECh----hhhcCCCCCCEEECC
Confidence 9999999887553 367788999999988
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.37 E-value=9.3e-13 Score=140.83 Aligned_cols=191 Identities=19% Similarity=0.103 Sum_probs=119.7
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCc-ccccccccchhHHh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP-VLKKCDHCMEDAIL 232 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~-l~~~~~~~~~~~i~ 232 (871)
..++.|+|++|+|++.. .+....+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|. +.... ....
T Consensus 32 ~~l~~L~l~~n~i~~~~---~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~-----~~~~ 101 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVP---AASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRSVD-----PATF 101 (285)
T ss_dssp TTCSEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCCCCC-----TTTT
T ss_pred CCceEEEeeCCcCCccC---HHHcccCCCCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCccccC-----HHHh
Confidence 45788888888887632 223466788888888888887642 4567888888888888887 64433 2233
Q ss_pred hcCCCcccccccccccccc--ccccccccccCCCCCCCcccc-----CCcCCccceeecCCccccccccccCCCCCCCCc
Q 002880 233 QGCPKLEIYNSNFTINFGE--WALGFCGEVYDKDNPSSLCLR-----DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~--~~l~~~~~~~~~~~~~~i~~~-----~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L 305 (871)
..+++|+.++++.+...+. ..+..+.++..+++.++-... ...+++|+.|+|++|.|+++.+..+. .+++|
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L 179 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSL 179 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTC
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc--Ccccc
Confidence 5677777777765533211 223334444444443332211 23467788888888888877666666 68888
Q ss_pred ceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCCcccc
Q 002880 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (871)
Q Consensus 306 ~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~L 361 (871)
+.|+|++|.+.++. +..++++++|+.|+++-. .+.......+..+++|+.|
T Consensus 180 ~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 180 DRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYL 230 (285)
T ss_dssp CEEECCSSCCCEEC----TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEE
T ss_pred CEEECCCCcccccC----HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEE
Confidence 88888888887643 345677888888888721 1112222334555555544
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.2e-12 Score=139.16 Aligned_cols=153 Identities=22% Similarity=0.271 Sum_probs=110.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|+... ......+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+.. ...+.
T Consensus 37 ~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~ 106 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP---SKAFHRLTKLRLLYLNDNKLQTLP--AGIFKELKNLETLWVTDNKLQALP-----IGVFD 106 (270)
T ss_dssp TTCSEEECCSSCCSCCC---TTSSSSCTTCCEEECCSSCCSCCC--TTTTSSCTTCCEEECCSSCCCCCC-----TTTTT
T ss_pred CCCCEEECcCCCCCeeC---HHHhcCCCCCCEEECCCCccCeeC--hhhhcCCCCCCEEECCCCcCCcCC-----HhHcc
Confidence 45788999999887532 223467889999999999988653 245678899999999999886544 23345
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+.... .+.. ....+++|+.|+|++|.|+++++..|. .+++|+.|+|++|
T Consensus 107 ~l~~L~~L~l~~n~l~~--------------~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n 167 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKS--------------LPPR---VFDSLTKLTYLSLGYNELQSLPKGVFD--KLTSLKELRLYNN 167 (270)
T ss_dssp TCSSCCEEECCSSCCCC--------------CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred cccCCCEEECCCCccCe--------------eCHH---HhCcCcCCCEEECCCCcCCccCHhHcc--CCcccceeEecCC
Confidence 67888888776443211 1100 113477889999999999888767777 7899999999999
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.|.+++.. .+.++++|+.|+++
T Consensus 168 ~l~~~~~~----~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 168 QLKRVPEG----AFDKLTELKTLKLD 189 (270)
T ss_dssp CCSCCCTT----TTTTCTTCCEEECC
T ss_pred cCcEeChh----HhccCCCcCEEECC
Confidence 98876532 46788899999887
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.36 E-value=1.9e-13 Score=150.18 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=87.9
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|+.. +.. ...+++|+.|+|++|.|+. +|..+++|++|+.|+|++|.+.... . ...
T Consensus 81 ~~l~~L~L~~n~l~~l---p~~-l~~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~n~l~~lp-----~-~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQF---PDQ-AFRLSHLQHMTIDAAGLME---LPDTMQQFAGLETLTLARNPLRALP-----A-SIA 147 (328)
T ss_dssp TTCCEEEEESSCCSSC---CSC-GGGGTTCSEEEEESSCCCC---CCSCGGGGTTCSEEEEESCCCCCCC-----G-GGG
T ss_pred cceeEEEccCCCchhc---Chh-hhhCCCCCEEECCCCCccc---hhHHHhccCCCCEEECCCCccccCc-----H-HHh
Confidence 4577888888887732 222 2347788888888888774 4556778888888888888775321 1 235
Q ss_pred cCCCcccccccccccccccccc-----------ccccccCCCCCC----CccccCCcCCccceeecCCccccccccccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALG-----------FCGEVYDKDNPS----SLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS 298 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~-----------~~~~~~~~~~~~----~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~ 298 (871)
.+++|+.++++.+...+..... .+.++..+++.. .+......+++|+.|+|++|.|+++ |..+.
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~ 226 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIH 226 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC-CGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC-chhhc
Confidence 6777777776554322211100 011111111111 1111122345555555555555554 22333
Q ss_pred CCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 299 PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 299 ~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++|+.|+|++|++.+ .++..++++++|+.|+++
T Consensus 227 --~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 227 --HLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp --GCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECT
T ss_pred --cCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECC
Confidence 45555555555555544 233345555555555555
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=2.1e-12 Score=137.58 Aligned_cols=151 Identities=24% Similarity=0.301 Sum_probs=118.1
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|.+. .....+++|+.|+|++|+|+.+. +..++++++|+.|+|++|.+.+.. ...+.
T Consensus 63 ~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~ 130 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI-----SALKELTNLTYLILTGNQLQSLP--NGVFDKLTNLKELVLVENQLQSLP-----DGVFD 130 (272)
T ss_dssp TTCCEEECTTSCCCCC-----GGGTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCC-----TTTTT
T ss_pred CCCcEEECCCCCCCCc-----hhhcCCCCCCEEECCCCccCccC--hhHhcCCcCCCEEECCCCcCCccC-----HHHhc
Confidence 5689999999999863 24567899999999999999653 355789999999999999997654 33345
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+... ..+.. ....+++|+.|+|++|.|+++++..+. .+++|+.|+|++|
T Consensus 131 ~l~~L~~L~L~~n~l~--------------~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N 191 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQ--------------SLPKG---VFDKLTNLTELDLSYNQLQSLPEGVFD--KLTQLKDLRLYQN 191 (272)
T ss_dssp TCTTCCEEECCSSCCC--------------CCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCccC--------------ccCHH---HhccCccCCEEECCCCCcCccCHHHhc--CCccCCEEECCCC
Confidence 7888888887755321 11111 113478899999999999998777777 7999999999999
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|.+++. ..++++++|+.|+++
T Consensus 192 ~l~~~~~----~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 192 QLKSVPD----GVFDRLTSLQYIWLH 213 (272)
T ss_dssp CCSCCCT----TTTTTCTTCCEEECC
T ss_pred cCCccCH----HHHhCCcCCCEEEcc
Confidence 9998653 357889999999998
No 11
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=1.1e-12 Score=155.94 Aligned_cols=186 Identities=19% Similarity=0.169 Sum_probs=106.6
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
++.|+|++|+|.+.. -...|++|+.|+|++|+|+++.. +.+|++|+.|+|++|.|.+.. .+..+
T Consensus 45 L~~L~l~~n~i~~l~-----~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~-------~l~~l 108 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIKDLS-------SLKDL 108 (605)
T ss_dssp CCCCBCTTCCCCCCT-----TGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCT-------TSTTC
T ss_pred CCEEECcCCCCCCCh-----HHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCCCCCh-------hhccC
Confidence 455555555554421 12345555555555555554322 555555555555555554322 12345
Q ss_pred CCccccccccccccccccccccccccCCCCCCCccc---cCCcCCccceeecCCccccccccccCCCCCCCCcceEeccC
Q 002880 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL---RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~---~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~ 312 (871)
++|+.|+++.+.....-.+..|.++..+++.++... ....+++|+.|+|++|.|++++| +. .+++|+.|+|++
T Consensus 109 ~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LA--GLTKLQNLYLSK 184 (605)
T ss_dssp TTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCS
T ss_pred CCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hc--cCCCCCEEECcC
Confidence 555555554443322222333444444444333222 23457899999999999999876 55 799999999999
Q ss_pred CCCCCcchHHHHHHhcCCCCcceeEeeCCC--CCCchhhHHhhhCCCcccccCcccc
Q 002880 313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG--PLGESAIEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 313 N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~--~l~~~~~~Il~~L~~L~~Ln~~~vs 367 (871)
|+|.+++ .+.+|++|+.|+|+-.. ..+......+..++.|..++|..++
T Consensus 185 N~i~~l~------~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~ 235 (605)
T 1m9s_A 185 NHISDLR------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235 (605)
T ss_dssp SCCCBCG------GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCC
T ss_pred CCCCCCh------HHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcC
Confidence 9999853 47899999999998110 0000011123345566677777766
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=1.9e-12 Score=144.67 Aligned_cols=246 Identities=18% Similarity=0.137 Sum_probs=144.5
Q ss_pred HHHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccccccc-
Q 002880 92 SQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDM- 170 (871)
Q Consensus 92 ~ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~- 170 (871)
..+..++..+.++..|..++++.+ .+..... ..|.... .....++.|+|++|.+....
T Consensus 19 ~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~---------------~~l~~~l-----~~~~~L~~L~Ls~~~~~~l~~ 77 (386)
T 2ca6_A 19 EDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAA---------------RWLSENI-----ASKKDLEIAEFSDIFTGRVKD 77 (386)
T ss_dssp HHHHTTSHHHHHCSCCCEEECTTS-EECHHHH---------------HHHHHTT-----TTCTTCCEEECCSCCTTSCGG
T ss_pred HHHHHHHHHHhcCCCccEEECCCC-CCCHHHH---------------HHHHHHH-----HhCCCccEEeCcccccCcccc
Confidence 345677777778888888888776 2221111 0011110 01245777777776554311
Q ss_pred ccccc------ccccCCCCcEeeccCCcccc--HHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC-------
Q 002880 171 LLSLN------LSSKFPDLQALSLCGNKLET--VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC------- 235 (871)
Q Consensus 171 l~~~~------l~~~~p~L~~L~Ls~N~L~~--~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l------- 235 (871)
..+.. ....+++|+.|+|++|.|+. ...++..+.++++|+.|+|++|.+.......+... +..+
T Consensus 78 ~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~l~~~~~~~ 156 (386)
T 2ca6_A 78 EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELAVNKKAK 156 (386)
T ss_dssp GSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-HHHHhhhhhcc
Confidence 11111 12466778888888887774 22456677777788888888887743321122222 1223
Q ss_pred --CCcccccccccccc----cc--ccccccccccCCCCCCCccc----------cCCcCCccceeecCCcccc----ccc
Q 002880 236 --PKLEIYNSNFTINF----GE--WALGFCGEVYDKDNPSSLCL----------RDRPLQSVTSLDLSNRCIH----NLV 293 (871)
Q Consensus 236 --p~Le~lnl~~t~~~----~~--~~l~~~~~~~~~~~~~~i~~----------~~~~l~~L~~LdLS~N~I~----~l~ 293 (871)
++|+.++++.+... +. .++..|..+..+.+.++-.. ....+++|+.|+|++|.|+ +.+
T Consensus 157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 66776666554322 11 12334445555555544322 3345788999999999996 445
Q ss_pred cccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcC--CCCcceeEeeCCCCCCchh-hHHh----hhCCCccccc
Q 002880 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG--FPCLQSLGVDIPGPLGESA-IEIL----ESLPTLCTLN 362 (871)
Q Consensus 294 p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~--lp~L~~L~L~iP~~l~~~~-~~Il----~~L~~L~~Ln 362 (871)
|..+. .+++|+.|+|++|.|.+.....++..+.. +++|+.|+|+-.. ++... ..++ ..+++|+.|+
T Consensus 237 ~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 237 AIALK--SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHGG--GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHc--cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEE
Confidence 66666 78999999999999988666667777744 9999999998332 23211 1233 3467766654
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=2.9e-13 Score=148.74 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=77.6
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHh---------cCCCCCeeeCCCCcccccccc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT---------KLKNLRALWLNNNPVLKKCDH 225 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~---------~L~~Lk~L~Ls~N~l~~~~~~ 225 (871)
.++.|+|++|.|+.. + .....+++|+.|+|++|++.. .+|..+. ++++|+.|+|++|.+....
T Consensus 128 ~L~~L~Ls~n~l~~l---p-~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-- 199 (328)
T 4fcg_A 128 GLETLTLARNPLRAL---P-ASIASLNRLRELSIRACPELT--ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-- 199 (328)
T ss_dssp TCSEEEEESCCCCCC---C-GGGGGCTTCCEEEEEEETTCC--CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC--
T ss_pred CCCEEECCCCccccC---c-HHHhcCcCCCEEECCCCCCcc--ccChhHhhccchhhhccCCCCCEEECcCCCcCcch--
Confidence 466666666666521 1 123455666666666654432 1222222 3666666666666664221
Q ss_pred cchhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCc
Q 002880 226 CMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (871)
Q Consensus 226 ~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L 305 (871)
. ....+++|+.++++.+... ..+. ....+++|+.|+|++|.+.+.+|..+. .+++|
T Consensus 200 ---~-~l~~l~~L~~L~L~~N~l~--------------~l~~----~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L 255 (328)
T 4fcg_A 200 ---A-SIANLQNLKSLKIRNSPLS--------------ALGP----AIHHLPKLEELDLRGCTALRNYPPIFG--GRAPL 255 (328)
T ss_dssp ---G-GGGGCTTCCEEEEESSCCC--------------CCCG----GGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCC
T ss_pred ---H-hhcCCCCCCEEEccCCCCC--------------cCch----hhccCCCCCEEECcCCcchhhhHHHhc--CCCCC
Confidence 1 1244555555554433211 0111 112355666666666666666666555 56666
Q ss_pred ceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 306 ~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+.|+|++|++.+ .++..++++++|+.|+|+
T Consensus 256 ~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 256 KRLILKDCSNLL----TLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp CEEECTTCTTCC----BCCTTGGGCTTCCEEECT
T ss_pred CEEECCCCCchh----hcchhhhcCCCCCEEeCC
Confidence 666666666554 344455666666666666
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=5.6e-12 Score=137.09 Aligned_cols=159 Identities=15% Similarity=0.140 Sum_probs=89.5
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+|++|+|.+.. ....+++|+.|+|++|+|+++.. +.+|++|+.|+|++|.+.+.. ....
T Consensus 42 ~L~~L~l~~~~i~~l~-----~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~~-------~~~~ 105 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-----GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVS-------AIAG 105 (308)
T ss_dssp TCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCG-------GGTT
T ss_pred CcCEEEeeCCCccCch-----hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCch-------hhcC
Confidence 3566666666665421 13446666666666666665432 566666666666666664432 1234
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCcccc---CCcCCccceeecCCccccccccccCCCCCCCCcceEecc
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR---DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~---~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs 311 (871)
+++|+.++++.+.....-.+..+.++..+++.++-..+ ...+++|+.|+|++|.|+++.+ +. .+++|+.|+|+
T Consensus 106 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~ 181 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LA--NLSKLTTLKAD 181 (308)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--hc--CCCCCCEEECC
Confidence 55566555554432222223333333333333222211 2346677777888877777644 44 67778888888
Q ss_pred CCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 312 GNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 312 ~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|.+.+++. +..+++|+.|+++
T Consensus 182 ~n~l~~~~~------l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 182 DNKISDISP------LASLPNLIEVHLK 203 (308)
T ss_dssp SSCCCCCGG------GGGCTTCCEEECT
T ss_pred CCccCcChh------hcCCCCCCEEEcc
Confidence 887776442 5677777777777
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=1.5e-12 Score=148.78 Aligned_cols=170 Identities=19% Similarity=0.207 Sum_probs=112.4
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+... ......+++|+.|+|++|+|+.+. +..+..|++|+.|+|++|.+.... ...+.
T Consensus 99 ~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~ 168 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIE---VGAFNGLASLNTLELFDNWLTVIP--SGAFEYLSKLRELWLRNNPIESIP-----SYAFN 168 (452)
T ss_dssp TTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCSBCC--TTTSSSCTTCCEEECCSCCCCEEC-----TTTTT
T ss_pred CCCCEEECCCCccCCcC---hhhccCcccCCEEECCCCcCCccC--hhhhcccCCCCEEECCCCCcceeC-----HhHHh
Confidence 56788888888877522 233456788888888888887643 345777888888888888886543 23345
Q ss_pred cCCCcccccccccccc---ccccccccccccCCCCCCCccc---cCCcCCccceeecCCccccccccccCCCCCCCCcce
Q 002880 234 GCPKLEIYNSNFTINF---GEWALGFCGEVYDKDNPSSLCL---RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH 307 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~---~~~~l~~~~~~~~~~~~~~i~~---~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~ 307 (871)
.+++|+.++++.+... +...+..+.++..+++..+-.. ....+++|+.|+|++|.|+++.|..|. .+++|+.
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~ 246 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKK 246 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGT--TCTTCCE
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCccccc--CccCCCE
Confidence 6777777776543222 2222333333333333333222 234466788888888888888777777 7888888
Q ss_pred EeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 308 LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|++|+|.++.. ..+.++++|+.|+|+
T Consensus 247 L~L~~n~l~~~~~----~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 247 LWVMNSQVSLIER----NAFDGLASLVELNLA 274 (452)
T ss_dssp EECTTSCCCEECT----TTTTTCTTCCEEECC
T ss_pred EEeCCCcCceECH----HHhcCCCCCCEEECC
Confidence 8888888887543 356778888888887
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=1.1e-12 Score=155.60 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=44.3
Q ss_pred CcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 274 ~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..+++|+.|+|++|.|++.+|..|. .+++|+.|+|++|.|.+++. .+..+|+|+.|+|+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLS 309 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECTTSCCCEEEC-----SSSCCTTCCEEECC
T ss_pred ccCCCCCEEECCCCccCCCCHHHhc--CccCCCEEECCCCCCCCCCc-----ccccCCCCcEEECC
Confidence 3466788888888888888777776 78888888888888876542 34667888888887
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.33 E-value=6.6e-12 Score=136.53 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=119.5
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|++... ...+++|+.|+|++|+|+.++ .+.++++|+.|+|++|.+.+.. . ..
T Consensus 63 ~~L~~L~L~~n~i~~~~~-----~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~-----~--l~ 126 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-----LKNLTKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQITDVT-----P--LA 126 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-----GTTCCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSCCCCCG-----G--GT
T ss_pred CCCCEEEccCCcCCCChh-----HccCCCCCEEEccCCcCCCch----hhcCCCCCCEEECCCCCCCCch-----h--hc
Confidence 568889999988876332 467888999999999888753 5888888899999988886643 1 46
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCcccc---CCcCCccceeecCCccccccccccCCCCCCCCcceEec
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR---DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~---~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnL 310 (871)
.+++|+.++++.+...+...+..+.++..+++.++-..+ ...+++|+.|+|++|.|+++.+ +. .+++|+.|+|
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~L 202 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA--SLPNLIEVHL 202 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEEC
T ss_pred CCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh--hc--CCCCCCEEEc
Confidence 778888888766644333234445555555554443222 3457899999999999999855 54 7999999999
Q ss_pred cCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 311 RGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 311 s~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++|+|.+++ .+.++++|+.|+++
T Consensus 203 ~~N~l~~~~------~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 203 KNNQISDVS------PLANTSNLFIVTLT 225 (308)
T ss_dssp TTSCCCBCG------GGTTCTTCCEEEEE
T ss_pred cCCccCccc------cccCCCCCCEEEcc
Confidence 999999855 27899999999998
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=1.2e-12 Score=126.41 Aligned_cols=131 Identities=24% Similarity=0.295 Sum_probs=99.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|++..+.. ....+++|+.|+|++|+|+++ ..++++++|+.|+|++|.+.+.. +....
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~-----~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGL-----EVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCT-----HHHHH
T ss_pred ccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchH-----HHHhh
Confidence 56899999999998433222 446789999999999999976 67889999999999999995532 11111
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccc-cccCCCCCCCCcceEeccC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~-p~~~~~~~l~~L~~LnLs~ 312 (871)
.+++|+.|+|++|.|+++. +..+. .+++|++|+|++
T Consensus 86 -----------------------------------------~l~~L~~L~ls~N~i~~~~~~~~~~--~l~~L~~L~l~~ 122 (149)
T 2je0_A 86 -----------------------------------------KCPNLTHLNLSGNKIKDLSTIEPLK--KLENLKSLDLFN 122 (149)
T ss_dssp -----------------------------------------HCTTCCEEECTTSCCCSHHHHGGGG--GCTTCCEEECTT
T ss_pred -----------------------------------------hCCCCCEEECCCCcCCChHHHHHHh--hCCCCCEEeCcC
Confidence 1567999999999999863 36666 799999999999
Q ss_pred CCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 313 NPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 313 N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|++.+++.- ....++.+++|+.|+++
T Consensus 123 N~l~~~~~~-~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 123 CEVTNLNDY-RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CGGGGSTTH-HHHHHHHCTTCCEETTB
T ss_pred CcccchHHH-HHHHHHHCCCcccccCC
Confidence 999875420 12357778888888764
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.32 E-value=1.7e-12 Score=145.04 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=43.1
Q ss_pred cCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 275 ~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++|+.|+|++|.|++..|..|. .+++|+.|+|++|++.+++. .+..+++|+.|+++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLS 303 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECC
T ss_pred CCCCccEEECCCCcCCCcChhHcc--ccccCCEEECCCCcCcccCc-----ccCCCCCCCEEECC
Confidence 456788888888888887777776 67888888888888876542 34567888888877
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.31 E-value=4.7e-12 Score=135.35 Aligned_cols=170 Identities=18% Similarity=0.139 Sum_probs=123.1
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCc-cccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~-L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
..++.|+|++|.|++.. ......+++|+.|+|++|. ++.+. +..+.++++|+.|+|++|.+.+.. ....
T Consensus 56 ~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~ 125 (285)
T 1ozn_A 56 RNLTILWLHSNVLARID---AAAFTGLALLEQLDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCGLQELG-----PGLF 125 (285)
T ss_dssp TTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSCTTCCCCC--TTTTTTCTTCCEEECTTSCCCCCC-----TTTT
T ss_pred CCCCEEECCCCccceeC---HhhcCCccCCCEEeCCCCCCccccC--HHHhcCCcCCCEEECCCCcCCEEC-----HhHh
Confidence 46888888888887532 1234567888888888886 76542 356788888888888888886543 2233
Q ss_pred hcCCCcccccccccccc--ccccccccccccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCc
Q 002880 233 QGCPKLEIYNSNFTINF--GEWALGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~--~~~~l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L 305 (871)
..+++|+.++++.+... +...+..+.++..+++.++-.. ....+++|+.|+|++|.|++..|..+. .+++|
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L 203 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRL 203 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTC
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc--Ccccc
Confidence 56777887777655332 2222444555555555544322 134578999999999999999888888 89999
Q ss_pred ceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 306 ~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+.|+|++|.|.+++. ..+.++++|+.|+++
T Consensus 204 ~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 204 MTLYLFANNLSALPT----EALAPLRALQYLRLN 233 (285)
T ss_dssp CEEECCSSCCSCCCH----HHHTTCTTCCEEECC
T ss_pred cEeeCCCCcCCcCCH----HHcccCcccCEEecc
Confidence 999999999998653 467899999999998
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=3.3e-12 Score=132.20 Aligned_cols=128 Identities=17% Similarity=0.237 Sum_probs=79.7
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
++.|+|++|+|+.. .+......+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+..++.
T Consensus 34 ~~~L~L~~N~l~~~--~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------- 100 (220)
T 2v70_A 34 TAELRLNNNEFTVL--EATGIFKKLPQLRKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLENVQHKM--------- 100 (220)
T ss_dssp CSEEECCSSCCCEE--CCCCCGGGCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCGGG---------
T ss_pred CCEEEcCCCcCCcc--CchhhhccCCCCCEEECCCCcCCEEC--HHHhCCCCCCCEEECCCCccCccCHhH---------
Confidence 45566666665542 11122345566666666666665432 234566666666666666664333100
Q ss_pred CCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
...+++|+.|+|++|.|+++.|..|. .+++|+.|+|++|+|
T Consensus 101 -------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 101 -------------------------------------FKGLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSLYDNQI 141 (220)
T ss_dssp -------------------------------------GTTCSSCCEEECTTSCCCCBCTTSST--TCTTCSEEECTTSCC
T ss_pred -------------------------------------hcCCcCCCEEECCCCcCCeECHhHcC--CCccCCEEECCCCcC
Confidence 12266788888888888888777777 788888888888888
Q ss_pred CCcchHHHHHHhcCCCCcceeEee
Q 002880 316 EQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 316 ~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++ +..+..+++|+.|+|+
T Consensus 142 ~~~~----~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 142 TTVA----PGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCBC----TTTTTTCTTCCEEECC
T ss_pred CEEC----HHHhcCCCCCCEEEec
Confidence 8754 2356777888888877
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.31 E-value=2e-12 Score=142.65 Aligned_cols=169 Identities=17% Similarity=0.099 Sum_probs=91.5
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+|++|+|++.. .+....+++|+.|+|++|+|+++. +..+.++++|+.|+|++|.+.+.. ......
T Consensus 53 ~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~ 122 (353)
T 2z80_A 53 AVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLSYNYLSNLS-----SSWFKP 122 (353)
T ss_dssp TCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSSCC-----HHHHTT
T ss_pred cCcEEECCCCcCcccC---HHHhccCCCCCEEECCCCccCccC--HhhcCCCCCCCEEECCCCcCCcCC-----HhHhCC
Confidence 4566666666665421 112345566666666666665431 234556666666666666664332 233345
Q ss_pred CCCcccccccccccc--cc-ccccccccccCCCCCCC--c----cccCCcCCccceeecCCccccccccccCCCCCCCCc
Q 002880 235 CPKLEIYNSNFTINF--GE-WALGFCGEVYDKDNPSS--L----CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (871)
Q Consensus 235 lp~Le~lnl~~t~~~--~~-~~l~~~~~~~~~~~~~~--i----~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L 305 (871)
+++|+.++++.+... +. ..+..+.++..+++.++ + ......+++|+.|+|++|.+++..|..+. .+++|
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L 200 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK--SIQNV 200 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh--ccccC
Confidence 555655555443221 11 12223333333333222 1 01123467788888888888887777776 67777
Q ss_pred ceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 306 ~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+.|+|++|.+..++. ..++.+++|+.|+++
T Consensus 201 ~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 201 SHLILHMKQHILLLE----IFVDVTSSVECLELR 230 (353)
T ss_dssp EEEEEECSCSTTHHH----HHHHHTTTEEEEEEE
T ss_pred CeecCCCCccccchh----hhhhhcccccEEECC
Confidence 777777777765331 234456777777776
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=3e-12 Score=132.58 Aligned_cols=128 Identities=22% Similarity=0.252 Sum_probs=80.5
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+|++|+|+... ......+++|+.|+|++|+|+.+ .+..+.++++|+.|+|++|.|....+
T Consensus 33 ~l~~L~l~~n~i~~i~---~~~~~~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~l~~---------- 97 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIP---PGAFSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNKITELPK---------- 97 (220)
T ss_dssp TCCEEECCSSCCCEEC---TTSSTTCTTCCEEECCSSCCCEE--CTTTTTTCSSCCEEECCSSCCCCCCT----------
T ss_pred CCCEEECCCCcCCCcC---HhHhhCCCCCCEEECCCCcCCCc--CHHHhhCCcCCCEEECCCCcCCccCH----------
Confidence 3556666666665421 12234456666666666666543 13455666666666666666643221
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~ 314 (871)
.. ...+++|+.|+|++|.|+++.+..|. .+++|+.|+|++|+
T Consensus 98 ---------------------------------~~---f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 98 ---------------------------------SL---FEGLFSLQLLLLNANKINCLRVDAFQ--DLHNLNLLSLYDNK 139 (220)
T ss_dssp ---------------------------------TT---TTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ---------------------------------hH---ccCCCCCCEEECCCCCCCEeCHHHcC--CCCCCCEEECCCCc
Confidence 00 12367788888888888888777777 78888888888888
Q ss_pred CCCcchHHHHHHhcCCCCcceeEee
Q 002880 315 LEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 315 L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|.+++.. .+..+++|+.|+|+
T Consensus 140 l~~~~~~----~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 140 LQTIAKG----TFSPLRAIQTMHLA 160 (220)
T ss_dssp CSCCCTT----TTTTCTTCCEEECC
T ss_pred CCEECHH----HHhCCCCCCEEEeC
Confidence 8876532 46677888888877
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=1.9e-12 Score=139.80 Aligned_cols=171 Identities=21% Similarity=0.199 Sum_probs=90.8
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|++ .+.+....+++|+.|+|++|+|+..+.++..+..+++|+.|+|++|.+.+... . ..
T Consensus 28 ~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~-----~-~~ 98 (306)
T 2z66_A 28 SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-----N-FL 98 (306)
T ss_dssp TTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE-----E-EE
T ss_pred CCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh-----h-cC
Confidence 346777777777764 22233456677777777777776543333455567777777777777654321 1 23
Q ss_pred cCCCcccccccccccccc---ccccccccccCCCCCCCccc-----cCCcCCccceeecCCccccc-cccccCCCCCCCC
Q 002880 234 GCPKLEIYNSNFTINFGE---WALGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHN-LVNKAFSPAEMPS 304 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~---~~l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~-l~p~~~~~~~l~~ 304 (871)
.+++|+.++++.+...+. ..+..+.++..+++.++... ....+++|+.|+|++|.+++ ..|..+. .+++
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~ 176 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRN 176 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTT
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh--hCcC
Confidence 455666665544422211 12233333333333332211 12234566666666666655 3455554 5666
Q ss_pred cceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 305 L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+.|+|++|.|.+++ +..+.++++|+.|+++
T Consensus 177 L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 177 LTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCCEEC----TTTTTTCTTCCEEECT
T ss_pred CCEEECCCCCcCCcC----HHHhcCCCCCCEEECC
Confidence 666666666665532 2245556666666665
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=8.7e-12 Score=136.66 Aligned_cols=162 Identities=16% Similarity=0.199 Sum_probs=79.7
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|++++|.+.+... ...+++|+.|+|++|.++++.. +..+++|+.|++++|.+.+..+ ..
T Consensus 155 ~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~-------~~ 218 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP-------VA 218 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG-------GG
T ss_pred CCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCch-------hh
Confidence 345555555555544221 3355666666666666654422 5555666666666665544321 24
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccc---cCCcCCccceeecCCccccccccccCCCCCCCCcceEec
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL---RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~---~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnL 310 (871)
.+++|+.++++.+.......+..+.++..+++.++-.. ....+++|+.|+|++|.|+++ + .+. .+++|+.|+|
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~--~l~~L~~L~L 294 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-S-VLN--NLSQLNSLFL 294 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-G-GGG--GCTTCSEEEC
T ss_pred cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-h-hhc--CCCCCCEEEC
Confidence 45555555554443222111333333333333322211 123345566666666666655 1 233 4566666666
Q ss_pred cCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 311 RGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 311 s~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++|++.+. .+..++++++|+.|+++
T Consensus 295 ~~n~l~~~----~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 295 NNNQLGNE----DMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CSSCCCGG----GHHHHHTCTTCSEEECC
T ss_pred cCCcCCCc----ChhHhhccccCCEEEcc
Confidence 66666552 23345566666666666
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=7e-12 Score=136.87 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=104.0
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccccccc----------
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD---------- 224 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~---------- 224 (871)
.++.|+|++|+|++.. ......+++|+.|+|++|+|+.+ .+..+++|++|+.|+|++|.+.....
T Consensus 53 ~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEE
T ss_pred CCeEEECCCCcCCEeC---hhhhccCCCCCEEECCCCcCCee--CHHHhcCCCCCCEEECCCCcCCccChhhcccccEEE
Confidence 4566677776666522 11234566677777777766643 23456666666666666666653321
Q ss_pred ------ccchhHHhhcCCCcccccccccccc----ccccccccccccCCCCCCCcccc--CCcCCccceeecCCcccccc
Q 002880 225 ------HCMEDAILQGCPKLEIYNSNFTINF----GEWALGFCGEVYDKDNPSSLCLR--DRPLQSVTSLDLSNRCIHNL 292 (871)
Q Consensus 225 ------~~~~~~i~~~lp~Le~lnl~~t~~~----~~~~l~~~~~~~~~~~~~~i~~~--~~~l~~L~~LdLS~N~I~~l 292 (871)
..+.......+++|+.++++.+... ....+..+..+..+++..+-... ....++|+.|+|++|.|++.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 207 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc
Confidence 1122333456666666666544321 11223334444444443322211 11236788888888888888
Q ss_pred ccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 293 VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 293 ~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+..+. .+++|+.|+|++|.+.+++. ..+.++++|+.|+++
T Consensus 208 ~~~~~~--~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 208 DAASLK--GLNNLAKLGLSFNSISAVDN----GSLANTPHLRELHLN 248 (330)
T ss_dssp CTGGGT--TCTTCCEEECCSSCCCEECT----TTGGGSTTCCEEECC
T ss_pred CHHHhc--CCCCCCEEECCCCcCceeCh----hhccCCCCCCEEECC
Confidence 777777 78899999999999887543 256788899999888
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=5.2e-12 Score=132.86 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=114.5
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
.+.+++++++++... .. -.++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+..+ ..+..+
T Consensus 16 ~~~l~~~~~~l~~~p---~~---~~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 82 (251)
T 3m19_A 16 KKEVDCQGKSLDSVP---SG---IPADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQLQTLSA-----GVFDDL 82 (251)
T ss_dssp GTEEECTTCCCSSCC---SC---CCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTC
T ss_pred CeEEecCCCCccccC---CC---CCCCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCcCCccCH-----hHhccC
Confidence 457888998887632 11 2368999999999999753 3578999999999999999977552 334568
Q ss_pred CCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
++|+.++++.+... ..+.. ....+++|+.|+|++|.|+++++..|. .+++|+.|+|++|.|
T Consensus 83 ~~L~~L~L~~n~l~--------------~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 83 TELGTLGLANNQLA--------------SLPLG---VFDHLTQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNTNQL 143 (251)
T ss_dssp TTCCEEECTTSCCC--------------CCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCC
T ss_pred CcCCEEECCCCccc--------------ccChh---HhcccCCCCEEEcCCCcCCCcChhHhc--cCCcccEEECcCCcC
Confidence 88888887654322 11111 113478999999999999999878787 899999999999999
Q ss_pred CCcchHHHHHHhcCCCCcceeEee
Q 002880 316 EQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 316 ~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++. ..++++++|+.|+|+
T Consensus 144 ~~~~~----~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 144 QSIPA----GAFDKLTNLQTLSLS 163 (251)
T ss_dssp CCCCT----TTTTTCTTCCEEECC
T ss_pred CccCH----HHcCcCcCCCEEECC
Confidence 98664 257889999999998
No 28
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=2.5e-12 Score=140.19 Aligned_cols=172 Identities=24% Similarity=0.278 Sum_probs=102.0
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCC-cccccccccchhHHh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN-PVLKKCDHCMEDAIL 232 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N-~l~~~~~~~~~~~i~ 232 (871)
..++.|+|++|.|++..+.. ....|++|+.|+|++|.+++ ..+..++++++|+.|+|++| .+++. ....+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~----~l~~~~ 164 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEF----ALQTLL 164 (336)
T ss_dssp BCCCEEECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHH----HHHHHH
T ss_pred CCCCEEEccCCCcCHHHHHH--HHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHH----HHHHHH
Confidence 56888999999887643322 45678999999999998873 45678888999999999999 56432 134455
Q ss_pred hcCCCcccccccccccccc----ccccccc-cccCCCCCCCcc--------ccCCcCCccceeecCCcc-ccccccccCC
Q 002880 233 QGCPKLEIYNSNFTINFGE----WALGFCG-EVYDKDNPSSLC--------LRDRPLQSVTSLDLSNRC-IHNLVNKAFS 298 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~----~~l~~~~-~~~~~~~~~~i~--------~~~~~l~~L~~LdLS~N~-I~~l~p~~~~ 298 (871)
..+++|+.++++.+..... ..+..|. ++..+++.++.. .....+++|+.|+|++|. +++..+..+.
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 7788888888876622211 1122333 444444433310 011234566666666666 4444444444
Q ss_pred CCCCCCcceEeccCCC-CCCcchHHHHHHhcCCCCcceeEee
Q 002880 299 PAEMPSLSHLNIRGNP-LEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 299 ~~~l~~L~~LnLs~N~-L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++|+.|+|++|. +.. .. ...++++++|+.|+++
T Consensus 245 --~l~~L~~L~l~~~~~~~~---~~-~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 245 --QLNYLQHLSLSRCYDIIP---ET-LLELGEIPTLKTLQVF 280 (336)
T ss_dssp --GCTTCCEEECTTCTTCCG---GG-GGGGGGCTTCCEEECT
T ss_pred --CCCCCCEeeCCCCCCCCH---HH-HHHHhcCCCCCEEecc
Confidence 55666666666663 221 11 1234556666666665
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.30 E-value=6e-12 Score=133.83 Aligned_cols=154 Identities=20% Similarity=0.288 Sum_probs=120.7
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
-..++.|+|++|.|+. .+......+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+.. ...+
T Consensus 60 l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~ 129 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLP-----PRVF 129 (270)
T ss_dssp CTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEECCSSCCCCCC--TTTTTTCSSCCEEECCSSCCCCCC-----TTTT
T ss_pred CCCCCEEECCCCccCe---eChhhhcCCCCCCEEECCCCcCCcCC--HhHcccccCCCEEECCCCccCeeC-----HHHh
Confidence 3579999999999975 22334567899999999999999753 356789999999999999997655 2334
Q ss_pred hcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccC
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~ 312 (871)
..+++|+.++++.+... ..+... ...+++|+.|+|++|.|+++.+..|. .+++|+.|+|++
T Consensus 130 ~~l~~L~~L~Ls~n~l~--------------~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~ 190 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQ--------------SLPKGV---FDKLTSLKELRLYNNQLKRVPEGAFD--KLTELKTLKLDN 190 (270)
T ss_dssp TTCTTCCEEECCSSCCC--------------CCCTTT---TTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCS
T ss_pred CcCcCCCEEECCCCcCC--------------ccCHhH---ccCCcccceeEecCCcCcEeChhHhc--cCCCcCEEECCC
Confidence 57888998887755322 111111 23478999999999999999877787 899999999999
Q ss_pred CCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 313 NPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 313 N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|.+++.. .+..+++|+.|+++
T Consensus 191 N~l~~~~~~----~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 191 NQLKRVPEG----AFDSLEKLKMLQLQ 213 (270)
T ss_dssp SCCSCCCTT----TTTTCTTCCEEECC
T ss_pred CcCCcCCHH----HhccccCCCEEEec
Confidence 999986643 57789999999988
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.30 E-value=2.2e-12 Score=147.42 Aligned_cols=172 Identities=18% Similarity=0.119 Sum_probs=128.7
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
-..++.|+|++|.|+.. +.+....+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|...+. +....+
T Consensus 122 l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~----i~~~~~ 192 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVI---PSGAFEYLSKLRELWLRNNPIESIP--SYAFNRVPSLMRLDLGELKKLEY----ISEGAF 192 (452)
T ss_dssp CTTCCEEECCSSCCSBC---CTTTSSSCTTCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCE----ECTTTT
T ss_pred cccCCEEECCCCcCCcc---ChhhhcccCCCCEEECCCCCcceeC--HhHHhcCCcccEEeCCCCCCccc----cChhhc
Confidence 35689999999998852 2334567899999999999998653 35688899999999998544332 223334
Q ss_pred hcCCCccccccccccccccccccccccccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCcce
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH 307 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~ 307 (871)
..+++|+.++++.+.....-.+..+.++..+++.++-.. ....+++|+.|+|++|.|+++.+..|. .+++|+.
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~ 270 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--GLASLVE 270 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCE
T ss_pred cCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc--CCCCCCE
Confidence 578888888877665443334455555555555544322 235578999999999999999888888 8999999
Q ss_pred EeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 308 LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|++|+|.+++.. .+..+++|+.|+|+
T Consensus 271 L~L~~N~l~~~~~~----~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 271 LNLAHNNLSSLPHD----LFTPLRYLVELHLH 298 (452)
T ss_dssp EECCSSCCSCCCTT----SSTTCTTCCEEECC
T ss_pred EECCCCcCCccChH----HhccccCCCEEEcc
Confidence 99999999987643 57788999999988
No 31
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=3e-12 Score=126.05 Aligned_cols=132 Identities=23% Similarity=0.317 Sum_probs=99.0
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
...++.|+|++|+|++..+.. ....+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.+.+.. +...
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGL-----DMLA 91 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCC-----CHHH
T ss_pred cccCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHH-----HHHH
Confidence 467999999999998433322 346789999999999999976 57889999999999999995532 1111
Q ss_pred hcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcccccccc-ccCCCCCCCCcceEecc
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR 311 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs 311 (871)
. .+++|+.|+|++|.|+++.. ..+. .+++|++|+|+
T Consensus 92 ~-----------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~l~--~l~~L~~L~l~ 128 (168)
T 2ell_A 92 E-----------------------------------------KLPNLTHLNLSGNKLKDISTLEPLK--KLECLKSLDLF 128 (168)
T ss_dssp H-----------------------------------------HCTTCCEEECBSSSCCSSGGGGGGS--SCSCCCEEECC
T ss_pred h-----------------------------------------hCCCCCEEeccCCccCcchhHHHHh--cCCCCCEEEee
Confidence 1 15668888999999888743 5666 78899999999
Q ss_pred CCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 312 GNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 312 ~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|++.+++.- ....+..+|+|+.|+++
T Consensus 129 ~N~l~~~~~~-~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 129 NCEVTNLNDY-RESVFKLLPQLTYLDGY 155 (168)
T ss_dssp SSGGGTSTTH-HHHHHTTCSSCCEETTE
T ss_pred CCcCcchHHH-HHHHHHhCccCcEecCC
Confidence 9988875420 11367788888888877
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.29 E-value=1.2e-11 Score=140.41 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=39.7
Q ss_pred cCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 275 ~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++|+.|+|++|.|++..|..|. .+++|+.|+|++|.|.++. +..++++++|+.|+++
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFLGSID----SRMFENLDKLEVLDLS 355 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECC
T ss_pred cCCCCCEEECCCCcccccChhHhc--CcccCCEEECCCCccCCcC----hhHhcCcccCCEEECC
Confidence 355677777777777776666666 6777777777777776543 2356677777777776
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=2.5e-12 Score=138.78 Aligned_cols=172 Identities=18% Similarity=0.086 Sum_probs=106.7
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+.....+.. ...+++|+.|+|++|.++.+ +..+.++++|+.|+|++|.+.+... .....
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l---~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~ 123 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSE----FSVFL 123 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEE---EEEEETCTTCCEEECTTSEEESSTT----TTTTT
T ss_pred ccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccC---hhhcCCCCCCCEEECCCCccccccc----chhhh
Confidence 4566777777766643222211 12356666666666666643 2345566666666666666644331 01224
Q ss_pred cCCCcccccccccccccc--ccccccccccCCCCCCCcc------ccCCcCCccceeecCCccccccccccCCCCCCCCc
Q 002880 234 GCPKLEIYNSNFTINFGE--WALGFCGEVYDKDNPSSLC------LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~--~~l~~~~~~~~~~~~~~i~------~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L 305 (871)
.+++|+.++++.+...+. ..+..+..+..+++.++.. .....+++|+.|+|++|.|+++.|..+. .+++|
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L 201 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSL 201 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTC
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCC
Confidence 456666666554432211 1222333333333333321 1234578999999999999999888887 89999
Q ss_pred ceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 306 ~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+.|+|++|++.+++.. .+.++++|+.|+++
T Consensus 202 ~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTF----PYKCLNSLQVLDYS 231 (306)
T ss_dssp CEEECTTSCCSBCCSG----GGTTCTTCCEEECT
T ss_pred CEEECCCCccCccChh----hccCcccCCEeECC
Confidence 9999999999986643 46889999999998
No 34
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=8.3e-12 Score=127.23 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|+.. +......+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+.. ...+.
T Consensus 28 ~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~ 97 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL---PNGVFDELTSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNLSTNQLQSLP-----NGVFD 97 (208)
T ss_dssp TTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCC-----TTTTT
T ss_pred CCCcEEEcCCCccCcC---ChhhhcccccCcEEECCCCccCccC--hhhcCCCCCcCEEECCCCcCCccC-----HhHhc
Confidence 3577888888887642 2233456788888888888887542 244677888888888888875443 22223
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+... ..+.. ....+++|+.|+|++|.|+++++..+. .+++|+.|+|++|
T Consensus 98 ~l~~L~~L~L~~N~l~--------------~~~~~---~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N 158 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQ--------------SLPDG---VFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSSCCC--------------CCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSC
T ss_pred CccCCCEEEcCCCcCc--------------ccCHh---HhccCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCC
Confidence 4455554444322111 00000 011244555555555555555444444 4555555555555
Q ss_pred CCC
Q 002880 314 PLE 316 (871)
Q Consensus 314 ~L~ 316 (871)
++.
T Consensus 159 ~~~ 161 (208)
T 2o6s_A 159 PWD 161 (208)
T ss_dssp CBC
T ss_pred Cee
Confidence 544
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.27 E-value=1.4e-11 Score=134.75 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=97.8
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccc---------
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH--------- 225 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~--------- 225 (871)
.++.|+|++|+|++.. .+....+++|+.|+|++|+|+.+ .+..+++|++|+.|+|++|.+......
T Consensus 55 ~l~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~ 129 (332)
T 2ft3_A 55 DTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKISKI--HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR 129 (332)
T ss_dssp TCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEE--CGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEE
T ss_pred CCeEEECCCCcCCccC---HhHhhCCCCCcEEECCCCccCcc--CHhHhhCcCCCCEEECCCCcCCccCccccccCCEEE
Confidence 3556666666655421 11234556666666666666543 134455666666666666655432210
Q ss_pred -------cchhHHhhcCCCcccccccccccc----ccccccccccccCCCCCCCcccc--CCcCCccceeecCCcccccc
Q 002880 226 -------CMEDAILQGCPKLEIYNSNFTINF----GEWALGFCGEVYDKDNPSSLCLR--DRPLQSVTSLDLSNRCIHNL 292 (871)
Q Consensus 226 -------~~~~~i~~~lp~Le~lnl~~t~~~----~~~~l~~~~~~~~~~~~~~i~~~--~~~l~~L~~LdLS~N~I~~l 292 (871)
.+.......+++|+.+++..+... ....+..+ .+..+++..+.... ....++|+.|+|++|.|++.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence 111222345666666665544321 11111111 23333333222211 11125788999999999888
Q ss_pred ccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 293 VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 293 ~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+..+. .+++|+.|+|++|+|.+++. ..+..+++|+.|+++
T Consensus 209 ~~~~l~--~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 209 ELEDLL--RYSKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLD 249 (332)
T ss_dssp CTTSST--TCTTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECC
T ss_pred CHHHhc--CCCCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECC
Confidence 777777 78999999999999988553 257788999999988
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.27 E-value=7.3e-12 Score=135.21 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=106.0
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+... ......+++|+.|+|++|+|+.+.. .+.+++|+.|+|++|.+.... ....
T Consensus 31 ~~l~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~------~~~~ 97 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS---LATLMPYTRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHNQLQSLP------LLGQ 97 (290)
T ss_dssp TTCCEEECTTSCCSEEE---GGGGTTCTTCCEEECTTSCCCEEEC----CSCCTTCCEEECCSSCCSSCC------CCTT
T ss_pred CCCCEEEcCCCcCCccC---HHHhhcCCCCCEEECCCCccCcccC----CCCCCcCCEEECCCCcCCcCc------hhhc
Confidence 35778888888887532 2234567888888888888886533 377888888888888886432 1225
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+... .++. .....+++|+.|+|++|+|+++++..|. .+++|+.|+|++|
T Consensus 98 ~l~~L~~L~l~~N~l~--------------~l~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N 158 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLT--------------SLPL---GALRGLGELQELYLKGNELKTLPPGLLT--PTPKLEKLSLANN 158 (290)
T ss_dssp TCTTCCEEECCSSCCC--------------CCCS---STTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTS
T ss_pred cCCCCCEEECCCCcCc--------------ccCH---HHHcCCCCCCEEECCCCCCCccChhhcc--cccCCCEEECCCC
Confidence 6777777776644321 1111 1123477888999999999888777777 7889999999999
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|.+++.. .+.++++|+.|+|+
T Consensus 159 ~l~~l~~~----~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 159 NLTELPAG----LLNGLENLDTLLLQ 180 (290)
T ss_dssp CCSCCCTT----TTTTCTTCCEEECC
T ss_pred cCCccCHH----HhcCcCCCCEEECC
Confidence 98876643 56778889999888
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.27 E-value=6.5e-12 Score=144.10 Aligned_cols=153 Identities=22% Similarity=0.202 Sum_probs=119.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|+... .+....+++|+.|+|++|+|+.+ .+..+.+|++|+.|+|++|.+.+.. ...+.
T Consensus 32 ~~l~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN---QDEFASFPHLEELELNENIVSAV--EPGAFNNLFNLRTLGLRSNRLKLIP-----LGVFT 101 (477)
T ss_dssp TTCSEEECCSSCCCEEC---TTTTTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCSCC-----TTSST
T ss_pred CCCcEEECCCCccceEC---HhHccCCCCCCEEECCCCccCEe--ChhhhhCCccCCEEECCCCcCCccC-----ccccc
Confidence 46899999999998732 23456799999999999999875 2467999999999999999997654 23345
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+...... +. ....+++|+.|+|++|.|+++.+..|. .+++|+.|+|++|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~-------------~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n 162 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILL-------------DY----MFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKC 162 (477)
T ss_dssp TCTTCCEEECTTSCCCEEC-------------TT----TTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESC
T ss_pred CCCCCCEEECCCCccccCC-------------hh----HccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCC
Confidence 6888998887755432110 11 123478899999999999999888887 8999999999999
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+.+++. ..+.++++|+.|+++
T Consensus 163 ~l~~~~~----~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 163 NLTSIPT----EALSHLHGLIVLRLR 184 (477)
T ss_dssp CCSSCCH----HHHTTCTTCCEEEEE
T ss_pred cCcccCh----hHhcccCCCcEEeCC
Confidence 9988663 367889999999998
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=2.3e-11 Score=133.24 Aligned_cols=162 Identities=22% Similarity=0.272 Sum_probs=86.6
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~ 257 (871)
..+++|+.|++++|.+..+.. +..+++|+.|+|++|.+.+..+ ...+++|+.+++..+.......+..+
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~ 220 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQITDITPVANM 220 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred hhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc-------ccCCCccceeecccCCCCCCchhhcC
Confidence 345556666666666554322 5566666666666666644321 34556666665554433222223344
Q ss_pred ccccCCCCCCCcccc---CCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcc
Q 002880 258 GEVYDKDNPSSLCLR---DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334 (871)
Q Consensus 258 ~~~~~~~~~~~i~~~---~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~ 334 (871)
..+..+++.++-... ...+++|+.|+|++|.++++ ..+. .+++|+.|+|++|++.+++ .+..+++|+
T Consensus 221 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~l~~n~l~~~~------~~~~l~~L~ 290 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVK--DLTKLKMLNVGSNQISDIS------VLNNLSQLN 290 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGT--TCTTCCEEECCSSCCCCCG------GGGGCTTCS
T ss_pred CcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHh--cCCCcCEEEccCCccCCCh------hhcCCCCCC
Confidence 444444444332221 23456677777777777665 2333 5777777777777777642 356777777
Q ss_pred eeEeeCCCCCCchhhHHhhhCCCcccc
Q 002880 335 SLGVDIPGPLGESAIEILESLPTLCTL 361 (871)
Q Consensus 335 ~L~L~iP~~l~~~~~~Il~~L~~L~~L 361 (871)
.|+++-. .+.......+..+++|+.|
T Consensus 291 ~L~L~~n-~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 291 SLFLNNN-QLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp EEECCSS-CCCGGGHHHHHTCTTCSEE
T ss_pred EEECcCC-cCCCcChhHhhccccCCEE
Confidence 7777722 1222223344556666554
No 39
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=4.7e-12 Score=141.45 Aligned_cols=185 Identities=16% Similarity=0.117 Sum_probs=130.9
Q ss_pred CceeEEeecccccccccccccc-ccccCCCCcEeeccCCccc--------cHHHHHHHHhcCCCCCeeeCCCCccccccc
Q 002880 154 GTVKWLELEDADIGDDMLLSLN-LSSKFPDLQALSLCGNKLE--------TVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~-l~~~~p~L~~L~Ls~N~L~--------~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~ 224 (871)
..++.|+|++|+|++.....+. ....+++|+.|+|++|.+. .+..+...+.++++|+.|+|++|.+.+...
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4589999999999986544432 3567999999999998665 344455667899999999999999965421
Q ss_pred ccchhHHhhcCCCccccccccccccccc--c----cccc---------ccccCCCCCCCccc---------cCCcCCccc
Q 002880 225 HCMEDAILQGCPKLEIYNSNFTINFGEW--A----LGFC---------GEVYDKDNPSSLCL---------RDRPLQSVT 280 (871)
Q Consensus 225 ~~~~~~i~~~lp~Le~lnl~~t~~~~~~--~----l~~~---------~~~~~~~~~~~i~~---------~~~~l~~L~ 280 (871)
..+. .....+++|+.++++.++..+.. . +..+ ..+..+.+.++-.. ....+++|+
T Consensus 112 ~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 112 EPLI-DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHH-HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHH-HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 1223 33467999999998777542111 1 2122 45555555544332 123467899
Q ss_pred eeecCCcccc--c---cccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCC
Q 002880 281 SLDLSNRCIH--N---LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (871)
Q Consensus 281 ~LdLS~N~I~--~---l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP 341 (871)
.|+|++|.|+ + +.+..+. .+++|+.|+|++|.|.......++..+.++++|+.|+|+-.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~--~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred EEECcCCCCCHhHHHHHHHHHhh--cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 9999999998 3 3344565 78999999999999875445678888999999999999833
No 40
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=5.7e-12 Score=131.15 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=85.6
Q ss_pred CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccc
Q 002880 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (871)
Q Consensus 181 p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~ 260 (871)
++|+.|+|++|+|+.+ .+..+.++++|+.|+|++|.|.... ...+..+++|+.++++.+...
T Consensus 40 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~----------- 101 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL--EPGVFDSLINLKELYLGSNQLGALP-----VGVFDSLTQLTVLDLGTNQLT----------- 101 (229)
T ss_dssp TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCC-----------
T ss_pred CCCCEEEcCCCccCcc--CHHHhhCccCCcEEECCCCCCCCcC-----hhhcccCCCcCEEECCCCcCC-----------
Confidence 4555555555555543 1234555555555555555553322 122234455555554432211
Q ss_pred cCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeC
Q 002880 261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340 (871)
Q Consensus 261 ~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~i 340 (871)
.++... ...+++|+.|+|++|.|+.+ |..+. .+++|+.|+|++|+|.+++. ..+.++++|+.|++.-
T Consensus 102 ---~l~~~~---~~~l~~L~~L~Ls~N~l~~l-p~~~~--~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 102 ---VLPSAV---FDRLVHLKELFMCCNKLTEL-PRGIE--RLTHLTHLALDQNQLKSIPH----GAFDRLSSLTHAYLFG 168 (229)
T ss_dssp ---CCCTTT---TTTCTTCCEEECCSSCCCSC-CTTGG--GCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECTT
T ss_pred ---ccChhH---hCcchhhCeEeccCCccccc-Ccccc--cCCCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeC
Confidence 001000 12367788888888888865 55555 68888888888888887653 3567788888888871
Q ss_pred CCC------CCchhhHHhhhCCCcccccCcccc
Q 002880 341 PGP------LGESAIEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 341 P~~------l~~~~~~Il~~L~~L~~Ln~~~vs 367 (871)
..- +.....-+....+.+..++|..+.
T Consensus 169 N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~ 201 (229)
T 3e6j_A 169 NPWDCECRDIMYLRNWVADHTSIAMRWDGKAVN 201 (229)
T ss_dssp SCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEE
T ss_pred CCccCCcchhHHHHHHHHhCccccccccCcccC
Confidence 111 111123344456667777776655
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.26 E-value=8.7e-12 Score=141.99 Aligned_cols=172 Identities=17% Similarity=0.137 Sum_probs=128.2
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
-..++.|+|++|.|+.. +.+....+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|...+. +....+
T Consensus 111 l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~l~~~~~l~~----i~~~~~ 181 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTI---PNGAFVYLSKLKELWLRNNPIESIP--SYAFNRIPSLRRLDLGELKRLSY----ISEGAF 181 (440)
T ss_dssp CSSCCEEECCSSCCSSC---CTTTSCSCSSCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCE----ECTTTT
T ss_pred CccCCEEECCCCcCCee---CHhHhhccccCceeeCCCCcccccC--HHHhhhCcccCEeCCCCCCCcce----eCcchh
Confidence 35689999999998852 2234567899999999999998653 35688899999999998554332 223344
Q ss_pred hcCCCccccccccccccccccccccccccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCcce
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH 307 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~ 307 (871)
..+++|+.++++.+.....-.+..+..+..+++.++-.. ....+++|+.|+|++|.|+++.+..|. .+++|+.
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~ 259 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--NLQSLVE 259 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST--TCTTCCE
T ss_pred hcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc--CCCCCCE
Confidence 678888888877664432223445555555555544322 234578999999999999999888888 8999999
Q ss_pred EeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 308 LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|++|+|++++.. .+..+++|+.|+|+
T Consensus 260 L~L~~N~l~~~~~~----~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 260 INLAHNNLTLLPHD----LFTPLHHLERIHLH 287 (440)
T ss_dssp EECTTSCCCCCCTT----TTSSCTTCCEEECC
T ss_pred EECCCCCCCccChh----HhccccCCCEEEcC
Confidence 99999999987643 67889999999988
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.26 E-value=9.8e-13 Score=143.33 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=70.3
Q ss_pred cCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccc--cccc
Q 002880 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEW--ALGF 256 (871)
Q Consensus 179 ~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~--~l~~ 256 (871)
.+++|+.|+|++|+|+. .+|..+.++++|+.|+|++|.+.+..+ .....+++|+.++++.+...+.. .+..
T Consensus 99 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLP-----PSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp GCTTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred cCCCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCC-----hHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 44555555555555542 123445555555555555555543221 11234555555554433222111 1111
Q ss_pred cc-cccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCC
Q 002880 257 CG-EVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGF 330 (871)
Q Consensus 257 ~~-~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~l 330 (871)
+. .+..+++..+... ....+. |+.|+|++|.|++.+|..+. .+++|+.|+|++|.+.+.. + .+..+
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~----~-~~~~l 243 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDL----G-KVGLS 243 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECCBG----G-GCCCC
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh--cCCCCCEEECCCCceeeec----C-ccccc
Confidence 21 2233333322211 111222 66666666666666666665 6677777777777766422 1 25666
Q ss_pred CCcceeEee
Q 002880 331 PCLQSLGVD 339 (871)
Q Consensus 331 p~L~~L~L~ 339 (871)
++|++|+++
T Consensus 244 ~~L~~L~Ls 252 (313)
T 1ogq_A 244 KNLNGLDLR 252 (313)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEECc
Confidence 777777766
No 43
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.26 E-value=3.5e-12 Score=155.75 Aligned_cols=171 Identities=18% Similarity=0.125 Sum_probs=98.2
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+|++|.+........ ....+++|+.|+|++|+++.. +|..++++++|+.|+|++|.+.+..+. ....
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~-----~l~~ 440 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIPS-----SLGS 440 (768)
T ss_dssp TCSEEECCSSEEEEECCTTT-TCSTTCCCCEEECCSSEEEEE--CCGGGGGCTTCCEEECCSSEEESCCCG-----GGGG
T ss_pred CCcEEEccCCCcCCCcChhh-hhcccCCccEEECCCCccccc--cCHHHhcCCCCCEEECcCCcccCcccH-----HHhc
Confidence 35566666665543211110 011245566666666655522 344555566666666666655443321 1234
Q ss_pred CCCcccccccccccccc--ccccccccccCCCCCCCcc-----ccCCcCCccceeecCCccccccccccCCCCCCCCcce
Q 002880 235 CPKLEIYNSNFTINFGE--WALGFCGEVYDKDNPSSLC-----LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH 307 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~--~~l~~~~~~~~~~~~~~i~-----~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~ 307 (871)
+++|+.+++..+...+. ..+..+..+..+++.++-. .....+++|+.|+|++|.+++.+|..+. .+++|+.
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~ 518 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAI 518 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh--cCCCCCE
Confidence 45555554433322211 1222333333333332221 1234478899999999999988888887 7999999
Q ss_pred EeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 308 LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|++|++.+ .+|..++++++|+.|+++
T Consensus 519 L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 519 LKLSNNSFSG----NIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp EECCSSCCEE----ECCGGGGGCTTCCEEECC
T ss_pred EECCCCcccC----cCCHHHcCCCCCCEEECC
Confidence 9999999986 556678899999999987
No 44
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=7.3e-12 Score=139.00 Aligned_cols=89 Identities=24% Similarity=0.212 Sum_probs=43.9
Q ss_pred CccceeecCCccccccc----cccCCCCC-CCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCC--CCCCch-h
Q 002880 277 QSVTSLDLSNRCIHNLV----NKAFSPAE-MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP--GPLGES-A 348 (871)
Q Consensus 277 ~~L~~LdLS~N~I~~l~----p~~~~~~~-l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP--~~l~~~-~ 348 (871)
++|+.||||+|.|++.. +..+. . .++|+.|+|++|.|.+.+...+...+..+++|+.|+++-. ..++.. .
T Consensus 196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 196 ASVTSLDLSANLLGLKSYAELAYIFS--SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHH--HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred CCCCEEECCCCCCChhHHHHHHHHHh--cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 35556666666655521 12221 1 2356666666666665555555555566666666666511 011111 2
Q ss_pred hHHhhhCCCcccccCcccc
Q 002880 349 IEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 349 ~~Il~~L~~L~~Ln~~~vs 367 (871)
..+...+++++.|..++++
T Consensus 274 ~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 274 KALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HHHHTTSTTCCEEEEECTT
T ss_pred HHHHHHhccCCceEEEecC
Confidence 3344455555555555554
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=1.3e-11 Score=131.19 Aligned_cols=137 Identities=21% Similarity=0.241 Sum_probs=92.0
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|++... .....+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+..+ ....
T Consensus 28 ~~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLAL-----GAFS 97 (276)
T ss_dssp TTCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT-----TTTT
T ss_pred CCccEEECCCCcccccCH---hHhccccCCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCccCccCh-----hhhc
Confidence 458899999999987432 23457899999999999998653 3568899999999999999976542 2335
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcccccc-ccccCCCCCCCCcceEeccC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL-VNKAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l-~p~~~~~~~l~~L~~LnLs~ 312 (871)
.+++|+.+++..+...+.... ....+++|+.|+|++|.|++. +|..+. .+++|+.|+|++
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~-----------------~~~~l~~L~~L~l~~n~l~~~~l~~~~~--~l~~L~~L~Ls~ 158 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENF-----------------PIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSS 158 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTC-----------------CCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCS
T ss_pred CCccccEEECCCCCccccCch-----------------hcccCCCCCEEECcCCccceecCchhhc--cCCCCCEEECCC
Confidence 678888887765432211000 012355666666666666664 255555 566666666666
Q ss_pred CCCCCcc
Q 002880 313 NPLEQNS 319 (871)
Q Consensus 313 N~L~~l~ 319 (871)
|+|.+++
T Consensus 159 N~l~~~~ 165 (276)
T 2z62_A 159 NKIQSIY 165 (276)
T ss_dssp SCCCEEC
T ss_pred CCCCcCC
Confidence 6666654
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.24 E-value=4.2e-12 Score=145.61 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=36.5
Q ss_pred cCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 275 ~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++|+.|+|++|.|+++.+..|. .+++|+.|+|++|+|.++. +..+.++++|+.|+|+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLH--ELLRLQEIQLVGGQLAVVE----PYAFRGLNYLRVLNVS 304 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCT--TCTTCCEEECCSSCCSEEC----TTTBTTCTTCCEEECC
T ss_pred CccccCeeECCCCcCCccChhhcc--ccccCCEEECCCCccceEC----HHHhcCcccCCEEECC
Confidence 345666666666666666555555 5666666666666666533 2345666666666666
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.24 E-value=6.8e-12 Score=136.67 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=137.9
Q ss_pred hChhHHHHHHhhhccccCC-CcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccccccccccc
Q 002880 96 EVPGLAQRMASLMCVDTDL-DTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSL 174 (871)
Q Consensus 96 ~~p~L~~rl~~l~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~l~~~ 174 (871)
.+|.-..+|..|.-++++. |.-...+++ .+ ++...++.|+|++|.|+....
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----------------~l---------~~l~~L~~L~Ls~n~l~~~~p--- 118 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPP----------------AI---------AKLTQLHYLYITHTNVSGAIP--- 118 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCG----------------GG---------GGCTTCSEEEEEEECCEEECC---
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCCh----------------hH---------hcCCCCCEEECcCCeeCCcCC---
Confidence 4666667778888888774 421111111 01 113568999999999874221
Q ss_pred cccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCC-Cccccccccccccccc-
Q 002880 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP-KLEIYNSNFTINFGEW- 252 (871)
Q Consensus 175 ~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp-~Le~lnl~~t~~~~~~- 252 (871)
.....+++|+.|+|++|.|+. .++..+.++++|+.|+|++|.+.+..+.. + ..++ .|+.++++.+...+..
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----l-~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGAIPDS----Y-GSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCEEECCGG----G-GCCCTTCCEEECCSSEEEEECC
T ss_pred HHHhCCCCCCEEeCCCCccCC--cCChHHhcCCCCCeEECcCCcccCcCCHH----H-hhhhhcCcEEECcCCeeeccCC
Confidence 234578999999999999984 25677899999999999999997544322 2 3455 7777776655332111
Q ss_pred -cccccccccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHH
Q 002880 253 -ALGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV 326 (871)
Q Consensus 253 -~l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~ 326 (871)
.+..+. +..+++..+-.. ....+++|+.|+|++|.|++.+|. +. .+++|+.|+|++|.|.+ .++..
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~--~l~~L~~L~Ls~N~l~~----~~p~~ 263 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG--LSKNLNGLDLRNNRIYG----TLPQG 263 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC--CCTTCCEEECCSSCCEE----CCCGG
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc--ccCCCCEEECcCCcccC----cCChH
Confidence 122222 444444443322 234588999999999999988666 55 78999999999999986 45567
Q ss_pred hcCCCCcceeEee
Q 002880 327 LKGFPCLQSLGVD 339 (871)
Q Consensus 327 l~~lp~L~~L~L~ 339 (871)
+.++++|+.|+++
T Consensus 264 l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 264 LTQLKFLHSLNVS 276 (313)
T ss_dssp GGGCTTCCEEECC
T ss_pred HhcCcCCCEEECc
Confidence 8999999999998
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.24 E-value=2.2e-12 Score=140.54 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=80.3
Q ss_pred CCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccccc
Q 002880 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGE 259 (871)
Q Consensus 180 ~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~ 259 (871)
+++|+.|+|++|+|+.+. +..++.+++|+.|+|++|.+.+..+ ..+...+++|+.++++.+.....
T Consensus 119 ~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~~l~~L~~L~L~~N~l~~~-------- 184 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNF----AELAASSDTLEHLNLQYNFIYDV-------- 184 (317)
T ss_dssp CSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEG----GGGGGGTTTCCEEECTTSCCCEE--------
T ss_pred cCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccH----HHHhhccCcCCEEECCCCcCccc--------
Confidence 566777777777776542 2345666777777777777654432 22223456666666554432111
Q ss_pred ccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 260 VYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 260 ~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+...+++|+.|+|++|.|+++++. +. .+++|+.|+|++|+|.+++ ..+..+++|+.|+++
T Consensus 185 -----------~~~~~l~~L~~L~Ls~N~l~~l~~~-~~--~l~~L~~L~L~~N~l~~l~-----~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 185 -----------KGQVVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDLR 245 (317)
T ss_dssp -----------ECCCCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEECT
T ss_pred -----------ccccccccCCEEECCCCcCCcchhh-hc--ccCcccEEECcCCcccchh-----hHhhcCCCCCEEEcc
Confidence 0122367788888888888877444 55 6788888888888887643 346778888888887
No 49
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=1.8e-11 Score=123.94 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=91.2
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|++.. ....+++|+.|+|++|.++.+ ..+.+|++|+.|+|++|.+.+..+.. ..
T Consensus 44 ~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~-----l~ 109 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-----GIEYAHNIKDLTINNIHATNY----NPISGLSNLERLRIMGKDVTSDKIPN-----LS 109 (197)
T ss_dssp HTCCEEEEESSCCSCCT-----TGGGCTTCSEEEEESCCCSCC----GGGTTCTTCCEEEEECTTCBGGGSCC-----CT
T ss_pred CCccEEeccCCCccChH-----HHhcCCCCCEEEccCCCCCcc----hhhhcCCCCCEEEeECCccCcccChh-----hc
Confidence 45889999999998522 246789999999999988865 36889999999999999996533212 23
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcc-ccccccccCCCCCCCCcceEeccC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC-IHNLVNKAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~-I~~l~p~~~~~~~l~~L~~LnLs~ 312 (871)
.+++|+.++++.+...+.. ......+++|+.|+|++|. ++.+ + .+. .+++|+.|+|++
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~-----------------~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~--~l~~L~~L~l~~ 168 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSI-----------------LTKINTLPKVNSIDLSYNGAITDI-M-PLK--TLPELKSLNIQF 168 (197)
T ss_dssp TCTTCCEEECCSSBCBGGG-----------------HHHHTTCSSCCEEECCSCTBCCCC-G-GGG--GCSSCCEEECTT
T ss_pred CCCCCCEEEecCCccCcHh-----------------HHHHhhCCCCCEEEccCCCCcccc-H-hhc--CCCCCCEEECCC
Confidence 4566666655544322100 0011225566666666665 4444 2 233 566666666666
Q ss_pred CCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 313 NPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 313 N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|++.+++ .+.++++|+.|+++
T Consensus 169 n~i~~~~------~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 169 DGVHDYR------GIEDFPKLNQLYAF 189 (197)
T ss_dssp BCCCCCT------TGGGCSSCCEEEEC
T ss_pred CCCcChH------HhccCCCCCEEEee
Confidence 6666533 34556666666665
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=2.7e-11 Score=131.61 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=47.1
Q ss_pred CCceeEEeeccccccccccccc-cc-cccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhH
Q 002880 153 DGTVKWLELEDADIGDDMLLSL-NL-SSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~-~l-~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~ 230 (871)
...++.|+|++|.|+... ..+ .+ ...+++|+.|+|++|+|+.+ .+..++++++|+.|+|++|++.+.. .+...
T Consensus 120 l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~ 194 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNF--SCEQVRVFPALSTLDLSDNPELGER--GLISA 194 (312)
T ss_dssp SCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCC--CTTTCCCCSSCCEEECCSCTTCHHH--HHHHH
T ss_pred CCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccc--hHHHhccCCCCCEEECCCCCcCcch--HHHHH
Confidence 356777777777776641 110 01 01126677777777766643 2245666667777777777654321 11111
Q ss_pred -HhhcCCCccccccccc
Q 002880 231 -ILQGCPKLEIYNSNFT 246 (871)
Q Consensus 231 -i~~~lp~Le~lnl~~t 246 (871)
....+++|+.++++.+
T Consensus 195 ~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNA 211 (312)
T ss_dssp SCTTSCTTCCEEECTTS
T ss_pred HHhccCCCCCEEECCCC
Confidence 1245566666665544
No 51
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=2.2e-11 Score=135.23 Aligned_cols=194 Identities=19% Similarity=0.135 Sum_probs=111.3
Q ss_pred ceeEEeecccccccccccccc-cccc-CCCCcEeeccCCccccH--HHHHHHHhcC-CCCCeeeCCCCcccccccccchh
Q 002880 155 TVKWLELEDADIGDDMLLSLN-LSSK-FPDLQALSLCGNKLETV--EIIVQEVTKL-KNLRALWLNNNPVLKKCDHCMED 229 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~-l~~~-~p~L~~L~Ls~N~L~~~--~~i~~~l~~L-~~Lk~L~Ls~N~l~~~~~~~~~~ 229 (871)
.++.|+|++|.|++.....+. +... +++|+.|+|++|+|+.. ..+...+..+ ++|+.|+|++|.+.+.....+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 466777777777664332221 1122 36777777777776532 2333445555 67777777777765544222222
Q ss_pred HHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcC-CccceeecCCccccccccccCCC--CCC-CCc
Q 002880 230 AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL-QSVTSLDLSNRCIHNLVNKAFSP--AEM-PSL 305 (871)
Q Consensus 230 ~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l-~~L~~LdLS~N~I~~l~p~~~~~--~~l-~~L 305 (871)
.+....++|+.++++.+.........++. ....+ ++|+.|+|++|.|++..+..+.. ..+ ++|
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 198 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQ-------------ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHH-------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHH-------------HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCC
Confidence 22111246666665544322111000100 00113 48999999999999886643330 035 599
Q ss_pred ceEeccCCCCCCcchHHHHHHhcCC-CCcceeEeeCCCCCCchh----hHHhhhCCCccccc
Q 002880 306 SHLNIRGNPLEQNSVRELLEVLKGF-PCLQSLGVDIPGPLGESA----IEILESLPTLCTLN 362 (871)
Q Consensus 306 ~~LnLs~N~L~~l~~~~i~~~l~~l-p~L~~L~L~iP~~l~~~~----~~Il~~L~~L~~Ln 362 (871)
+.|+|++|.|.+.....++..+..+ ++|+.|+|+-. .++... ..+...+++|+.|+
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEE
Confidence 9999999999988888888888875 59999999932 222221 23334555655553
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=5.5e-12 Score=146.15 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=73.7
Q ss_pred CCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccccc
Q 002880 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGE 259 (871)
Q Consensus 180 ~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~ 259 (871)
+++|+.|+|++|.|+++ .+..++++++|+.|+|++|.+++..+ ..+...+++|+.++++.+...+.
T Consensus 119 l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~l~~L~~L~Ls~N~l~~~-------- 184 (487)
T 3oja_A 119 GQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNF----AELAASSDTLEHLNLQYNFIYDV-------- 184 (487)
T ss_dssp CSSCEEEECCSSCCCSG--GGBCGGGGSSEEEEECTTSCCCEEEG----GGGGGGTTTCCEEECTTSCCCEE--------
T ss_pred cCCCCEEECCCCCCCCC--CchhhcCCCCCCEEECCCCCCCCcCh----HHHhhhCCcccEEecCCCccccc--------
Confidence 45666666666666543 22345556666666666666644331 22223455555555544322111
Q ss_pred ccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 260 VYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 260 ~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.....+++|+.|+||+|.|++++|. +. .+++|+.|+|++|.|.+++ ..++.+++|+.|+++
T Consensus 185 -----------~~~~~l~~L~~L~Ls~N~l~~~~~~-~~--~l~~L~~L~Ls~N~l~~lp-----~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 185 -----------KGQVVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDLR 245 (487)
T ss_dssp -----------ECCCCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEECT
T ss_pred -----------cccccCCCCCEEECCCCCCCCCCHh-Hc--CCCCccEEEecCCcCcccc-----hhhccCCCCCEEEcC
Confidence 0122366777888888888777544 54 6777888888888877644 346677777777776
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.22 E-value=2e-11 Score=131.69 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=116.9
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
...++.|+|++|.|+.... ...+++|+.|+|++|+|+.+ +..+..+++|+.|+|++|+|++..++ .+
T Consensus 54 l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~l~~N~l~~l~~~-----~~ 120 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQV-----DGTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLG-----AL 120 (290)
T ss_dssp CTTCCEEECTTSCCCEEEC-----CSCCTTCCEEECCSSCCSSC---CCCTTTCTTCCEEECCSSCCCCCCSS-----TT
T ss_pred CCCCCEEECCCCccCcccC-----CCCCCcCCEEECCCCcCCcC---chhhccCCCCCEEECCCCcCcccCHH-----HH
Confidence 4679999999999987322 26789999999999999864 45688999999999999999766532 23
Q ss_pred hcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccC
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~ 312 (871)
..+++|+.++++.+... ..+... ...+++|+.|+|++|+|+++++..|. .+++|+.|+|++
T Consensus 121 ~~l~~L~~L~L~~N~l~--------------~~~~~~---~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~ 181 (290)
T 1p9a_G 121 RGLGELQELYLKGNELK--------------TLPPGL---LTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQE 181 (290)
T ss_dssp TTCTTCCEEECTTSCCC--------------CCCTTT---TTTCTTCCEEECTTSCCSCCCTTTTT--TCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCCCC--------------ccChhh---cccccCCCEEECCCCcCCccCHHHhc--CcCCCCEEECCC
Confidence 56788888887654322 111111 13478999999999999999777777 899999999999
Q ss_pred CCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 313 NPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 313 N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|..++ ..+..+++|+.|+|+
T Consensus 182 N~l~~ip-----~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 182 NSLYTIP-----KGFFGSHLLPFAFLH 203 (290)
T ss_dssp SCCCCCC-----TTTTTTCCCSEEECC
T ss_pred CcCCccC-----hhhcccccCCeEEeC
Confidence 9999765 345677889999887
No 54
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=2.4e-11 Score=123.29 Aligned_cols=122 Identities=19% Similarity=0.260 Sum_probs=94.1
Q ss_pred eEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCC
Q 002880 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (871)
Q Consensus 157 ~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp 236 (871)
+.+++++++|+... .. -.++|+.|+|++|+|+.+ +..+.++++|+.|+|++|.|++..++.|
T Consensus 13 ~~l~~~~~~l~~ip---~~---~~~~l~~L~L~~n~i~~i---p~~~~~l~~L~~L~Ls~N~i~~i~~~~f--------- 74 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP---KG---IPRDVTELYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSF--------- 74 (193)
T ss_dssp TEEECTTSCCSSCC---SC---CCTTCCEEECCSSCCCSC---CGGGGGCTTCCEEECCSSCCCCCCTTTT---------
T ss_pred CEEEcCCCCCCcCC---CC---CCCCCCEEECCCCcCchh---HHHhhcccCCCEEECCCCcCCEeCHhHc---------
Confidence 46788888887632 11 247899999999999864 4689999999999999999966542111
Q ss_pred CccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCC
Q 002880 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 237 ~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
..+++|+.|+|++|.|+++.+..|. .+++|+.|+|++|+|.
T Consensus 75 -------------------------------------~~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 75 -------------------------------------SNMTQLLTLILSYNRLRCIPPRTFD--GLKSLRLLSLHGNDIS 115 (193)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSSCCC
T ss_pred -------------------------------------cCCCCCCEEECCCCccCEeCHHHhC--CCCCCCEEECCCCCCC
Confidence 1267788888888888888777777 7888888888888888
Q ss_pred CcchHHHHHHhcCCCCcceeEee
Q 002880 317 QNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 317 ~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+++.. .+..+++|+.|+++
T Consensus 116 ~~~~~----~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 116 VVPEG----AFNDLSALSHLAIG 134 (193)
T ss_dssp BCCTT----TTTTCTTCCEEECC
T ss_pred eeChh----hhhcCccccEEEeC
Confidence 76533 56778888888877
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.21 E-value=2.9e-12 Score=151.22 Aligned_cols=172 Identities=15% Similarity=0.066 Sum_probs=95.3
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+.....+ .....+++|+.|+|++|.++.+ +..+..+++|+.|+|++|.+.+..+ .....
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~---~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~ 421 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCS-YSDLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHSTLKRVTE----FSAFL 421 (606)
T ss_dssp TTCCEEECCSSCEEEEEECC-HHHHCCSCCCEEECCSCSEEEE---CCCCTTCTTCCEEECTTSEEESTTT----TTTTT
T ss_pred CCCCEEECcCCccCCCcchh-hhhccCCcccEeECCCCccccc---hhhccCCCCCCeeECCCCccCCccC----hhhhh
Confidence 45666666666655422111 1224456666666666666543 2445566666666666666644321 11223
Q ss_pred cCCCcccccccccccccc--ccccccccccCCCCCCCccc------cCCcCCccceeecCCccccccccccCCCCCCCCc
Q 002880 234 GCPKLEIYNSNFTINFGE--WALGFCGEVYDKDNPSSLCL------RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~--~~l~~~~~~~~~~~~~~i~~------~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L 305 (871)
.+++|+.++++.+...+. ..+..+.++..+++.++-.. ....+++|+.|+|++|.|++.+|..+. .+++|
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L 499 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD--TLHRL 499 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTC
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc--ccccC
Confidence 556666666554433221 12333444444444433221 123456777777777777777666666 67777
Q ss_pred ceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 306 ~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+.|+|++|++.++. +..++++++|+.|+++
T Consensus 500 ~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 500 QLLNMSHNNLLFLD----SSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CEEECCSSCCSCEE----GGGTTTCTTCCEEECT
T ss_pred CEEECCCCcCCCcC----HHHccCCCcCCEEECC
Confidence 77777777777632 3456677777777776
No 56
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=3.7e-11 Score=127.78 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=107.8
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|++.. ....+++|+.|+|++|+|+++.. +.+|++|+.|+|++|.+.+... + .
T Consensus 41 ~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~N~l~~l~~--~-----~ 104 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNRLKNLNG--I-----P 104 (263)
T ss_dssp TTCSEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSCCSCCTT--C-----C
T ss_pred CcCcEEECcCCCcccch-----HHhhCCCCCEEECCCCccCCChh----hccCCCCCEEECCCCccCCcCc--c-----c
Confidence 46899999999998632 34678999999999999998643 8999999999999999976541 1 1
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
. ++|+.++++.+...+. .....+++|+.|+|++|.|+++ + .+. .+++|+.|+|++|
T Consensus 105 ~-~~L~~L~L~~N~l~~~-------------------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~--~l~~L~~L~L~~N 160 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELRDT-------------------DSLIHLKNLEILSIRNNKLKSI-V-MLG--FLSKLEVLDLHGN 160 (263)
T ss_dssp C-SSCCEEECCSSCCSBS-------------------GGGTTCTTCCEEECTTSCCCBC-G-GGG--GCTTCCEEECTTS
T ss_pred c-CcccEEEccCCccCCC-------------------hhhcCcccccEEECCCCcCCCC-h-HHc--cCCCCCEEECCCC
Confidence 1 6677776664432211 1123478899999999999987 3 455 7999999999999
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|.++ ..+.++++|+.|+++
T Consensus 161 ~i~~~------~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 161 EITNT------GGLTRLKKVNWIDLT 180 (263)
T ss_dssp CCCBC------TTSTTCCCCCEEEEE
T ss_pred cCcch------HHhccCCCCCEEeCC
Confidence 99985 367889999999998
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.21 E-value=4.6e-11 Score=138.36 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=82.8
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
...++.|+|++|.|++... .....+++|+.|+|++|+|++++.++..++++++|+.|+|++|.+.+.. +....
T Consensus 323 l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l----~~~~~ 395 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVF---ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE----KKGDC 395 (520)
T ss_dssp CCCCCEEECCSSCCCTTTT---TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG----GGCSC
T ss_pred CCcccEEEeECCccChhhh---hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc----ccchh
Confidence 3456666666666655211 1224566677777777777666666666677777777777777664411 11122
Q ss_pred hcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccC
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~ 312 (871)
..+++|+.++++.+...+. +.. ...++|+.|+|++|.|+.+ |..+. .+++|+.|+|++
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~-----------------~~~--~l~~~L~~L~Ls~N~l~~i-p~~~~--~l~~L~~L~L~~ 453 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDT-----------------IFR--CLPPRIKVLDLHSNKIKSI-PKQVV--KLEALQELNVAS 453 (520)
T ss_dssp CCCTTCCEEECCSSCCCGG-----------------GGG--SCCTTCCEEECCSSCCCCC-CGGGG--GCTTCCEEECCS
T ss_pred ccCccCCEEECcCCCCCcc-----------------hhh--hhcccCCEEECCCCccccc-chhhh--cCCCCCEEECCC
Confidence 3445555555443321110 000 0014566666666666644 43333 466666666666
Q ss_pred CCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 313 NPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 313 N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|.+++.. .+.++++|+.|+++
T Consensus 454 N~l~~l~~~----~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 454 NQLKSVPDG----IFDRLTSLQKIWLH 476 (520)
T ss_dssp SCCCCCCTT----TTTTCTTCCEEECC
T ss_pred CcCCccCHH----HhccCCcccEEECc
Confidence 666654432 35556666666665
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.21 E-value=5.2e-12 Score=137.91 Aligned_cols=203 Identities=17% Similarity=0.149 Sum_probs=133.2
Q ss_pred HHhhChh-HHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeecccccccccc
Q 002880 93 QLQEVPG-LAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDML 171 (871)
Q Consensus 93 ql~~~p~-L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~l 171 (871)
.+..+|. -...|.+|..++++.+ .+..+.. + .=.+-..++.|+|++|.|++...
T Consensus 63 ~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---------------~---------~~~~l~~L~~L~Ls~n~l~~l~~ 117 (330)
T 1xku_A 63 KITEIKDGDFKNLKNLHTLILINN-KISKISP---------------G---------AFAPLVKLERLYLSKNQLKELPE 117 (330)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCT---------------T---------TTTTCTTCCEEECCSSCCSBCCS
T ss_pred cCCEeChhhhccCCCCCEEECCCC-cCCeeCH---------------H---------HhcCCCCCCEEECCCCcCCccCh
Confidence 3445544 4567778888888766 2222211 0 00123568889999988875221
Q ss_pred ccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccc
Q 002880 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE 251 (871)
Q Consensus 172 ~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~ 251 (871)
..+++|+.|+|++|+++.+. +..+.++++|+.|+|++|.+.... ........+++|+.++++.++....
T Consensus 118 ------~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 118 ------KMPKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSG---IENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp ------SCCTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGG---BCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred ------hhcccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccC---cChhhccCCCCcCEEECCCCccccC
Confidence 12378899999999888653 456888889999999998885321 1223345678888777665532211
Q ss_pred ccccccccccCCCCCCCcc-----ccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHH
Q 002880 252 WALGFCGEVYDKDNPSSLC-----LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV 326 (871)
Q Consensus 252 ~~l~~~~~~~~~~~~~~i~-----~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~ 326 (871)
.......+..+++.++-. .....+++|+.|+|++|.|++..+..+. .+++|+.|+|++|+|..++ ..
T Consensus 187 -~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp-----~~ 258 (330)
T 1xku_A 187 -PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNNKLVKVP-----GG 258 (330)
T ss_dssp -CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCSSCCSSCC-----TT
T ss_pred -CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc--CCCCCCEEECCCCcCccCC-----hh
Confidence 111113333333333221 1234578999999999999999777787 7999999999999998654 35
Q ss_pred hcCCCCcceeEee
Q 002880 327 LKGFPCLQSLGVD 339 (871)
Q Consensus 327 l~~lp~L~~L~L~ 339 (871)
+..+++|+.|+++
T Consensus 259 l~~l~~L~~L~l~ 271 (330)
T 1xku_A 259 LADHKYIQVVYLH 271 (330)
T ss_dssp TTTCSSCCEEECC
T ss_pred hccCCCcCEEECC
Confidence 7889999999998
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.21 E-value=1.5e-11 Score=137.31 Aligned_cols=135 Identities=17% Similarity=0.275 Sum_probs=81.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..+++|+|+++.++. .+......+++|+.|+|++|.|+++. +..+.++++|+.|+|++|.+.+..+ ....
T Consensus 45 ~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQ 114 (390)
T ss_dssp CCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCT-----TTTT
T ss_pred CCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCcCCH-----HHhc
Confidence 457888888888776 23334567888888888888887642 3467888888888888888866542 2335
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+.... ++..+ ...+++|+.|+|++|.|.++.+..+. .+++|+.|+|++|
T Consensus 115 ~l~~L~~L~L~~n~l~~--------------l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n 175 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSS--------------LPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSN 175 (390)
T ss_dssp TCTTCCEEECCSSCCCC--------------CCTTT---TTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCccCc--------------CCHHH---hcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCC
Confidence 67788888776553221 11110 01244455555555555555444444 4555555555555
Q ss_pred CCCC
Q 002880 314 PLEQ 317 (871)
Q Consensus 314 ~L~~ 317 (871)
++.+
T Consensus 176 ~l~~ 179 (390)
T 3o6n_A 176 RLTH 179 (390)
T ss_dssp CCSB
T ss_pred cCCc
Confidence 5544
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.20 E-value=1.5e-11 Score=144.70 Aligned_cols=65 Identities=26% Similarity=0.293 Sum_probs=42.1
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccc
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~ 223 (871)
..++.|+|++|.|+.. +......+++|+.|+|++|+|+.++ +.+|.+|++|+.|+|++|+|.+..
T Consensus 52 ~~~~~LdLs~N~i~~l---~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cCCCEEEeeCCCCCCC---CHHHHhCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccCCcCCCCC
Confidence 3467777777777652 1223456777777777777777543 245777777777777777775443
No 61
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=1.5e-11 Score=136.55 Aligned_cols=131 Identities=22% Similarity=0.287 Sum_probs=74.4
Q ss_pred ceeEEeeccccccccccccccccc-cCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSS-KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~-~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
.++.|+|++|+|+... ..... .+++|+.|+|++|+|+.+. +..+.+|++|+.|+|++|.|.+..+ ..+.
T Consensus 40 ~l~~L~Ls~N~l~~l~---~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~ 109 (361)
T 2xot_A 40 YTALLDLSHNNLSRLR---AEWTPTRLTNLHSLLLSHNHLNFIS--SEAFVPVPNLRYLDLSSNHLHTLDE-----FLFS 109 (361)
T ss_dssp TCSEEECCSSCCCEEC---TTSSSSCCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECT-----TTTT
T ss_pred CCCEEECCCCCCCccC---hhhhhhcccccCEEECCCCcCCccC--hhhccCCCCCCEEECCCCcCCcCCH-----HHhC
Confidence 3567777777776522 12222 6677777777777777543 2456777777777777777754331 1112
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
. +++|+.|+|++|.|+++.+..|. .+++|+.|+|++|
T Consensus 110 ~-----------------------------------------l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~N 146 (361)
T 2xot_A 110 D-----------------------------------------LQALEVLLLYNNHIVVVDRNAFE--DMAQLQKLYLSQN 146 (361)
T ss_dssp T-----------------------------------------CTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSS
T ss_pred C-----------------------------------------CcCCCEEECCCCcccEECHHHhC--CcccCCEEECCCC
Confidence 2 45566666666666666555555 5666666666666
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|.+++...+ ..+.++++|+.|+|+
T Consensus 147 ~l~~l~~~~~-~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 147 QISRFPVELI-KDGNKLPKLMLLDLS 171 (361)
T ss_dssp CCCSCCGGGT-C----CTTCCEEECC
T ss_pred cCCeeCHHHh-cCcccCCcCCEEECC
Confidence 6665543210 001445666666665
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=7.5e-12 Score=145.01 Aligned_cols=63 Identities=30% Similarity=0.240 Sum_probs=46.9
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccc
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~ 223 (871)
..++.|+|++|+|++.. ......+++|+.|+|++|.|++..+ ++.+++|+.|+|++|.|.+..
T Consensus 34 ~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 34 WNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp GGCCEEECCSSCCCCCC---GGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEEE
T ss_pred CCccEEEeeCCcCCCCC---HHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCCC
Confidence 35888999998887632 2334678888899999888875432 788888888888888886543
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.20 E-value=1.2e-11 Score=134.29 Aligned_cols=168 Identities=18% Similarity=0.117 Sum_probs=119.2
Q ss_pred CCceeEEeeccccccccccccccc-cccCCCCcEeeccCCccccHHHHHHHHhcC-----CCCCeeeCCCCccccccccc
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNL-SSKFPDLQALSLCGNKLETVEIIVQEVTKL-----KNLRALWLNNNPVLKKCDHC 226 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l-~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L-----~~Lk~L~Ls~N~l~~~~~~~ 226 (871)
...++.|+|++|+|++.. +..+ ...+++|+.|+|++|+|+.. +..++.+ ++|+.|+|++|.+.+..+.
T Consensus 94 l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~- 167 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTA--PPPLLEATGPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE- 167 (312)
T ss_dssp TSCCCEEEEEEEBCBSCC--CCCSSSCCSCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-
T ss_pred cCCccEEEccCCcccchh--HHHHHHhcCCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-
Confidence 457999999999998532 2222 36789999999999999976 3455555 9999999999999765532
Q ss_pred chhHHhhcCCCcccccccccccccc------ccccccccccCCCCCCCccccC--------CcCCccceeecCCcccccc
Q 002880 227 MEDAILQGCPKLEIYNSNFTINFGE------WALGFCGEVYDKDNPSSLCLRD--------RPLQSVTSLDLSNRCIHNL 292 (871)
Q Consensus 227 ~~~~i~~~lp~Le~lnl~~t~~~~~------~~l~~~~~~~~~~~~~~i~~~~--------~~l~~L~~LdLS~N~I~~l 292 (871)
....+++|+.++++.+...+. .....+..+..+++.++-..+. ..+++|+.|+|++|.|++.
T Consensus 168 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 168 ----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp ----TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred ----HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 234788999998876653221 1124455555555555443311 2457899999999999887
Q ss_pred cc-ccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 293 VN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 293 ~p-~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+| ..+. .+++|+.|+|++|.|+.++. .+. ++|+.|+++
T Consensus 244 ~~~~~~~--~l~~L~~L~Ls~N~l~~ip~-----~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 244 AGAPSCD--WPSQLNSLNLSFTGLKQVPK-----GLP--AKLSVLDLS 282 (312)
T ss_dssp CCCSCCC--CCTTCCEEECTTSCCSSCCS-----SCC--SEEEEEECC
T ss_pred cchhhhh--hcCCCCEEECCCCccChhhh-----hcc--CCceEEECC
Confidence 65 4444 57899999999999887553 222 788999988
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.20 E-value=5.9e-11 Score=136.12 Aligned_cols=141 Identities=22% Similarity=0.227 Sum_probs=80.7
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~ 257 (871)
..+++|+.|+|++|.+++++ .+.++++|+.|+|++|.+.+..+ ...+++|+.++++.+.......+..+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~l~~l 242 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLKDIGTLASL 242 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred ccCCCCCEEECcCCcCCCCh----hhccCCCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcccchhhhcC
Confidence 45677777777777777642 36677777777777777755431 24466666666555433222233344
Q ss_pred ccccCCCCCCCcccc---CCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcc
Q 002880 258 GEVYDKDNPSSLCLR---DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334 (871)
Q Consensus 258 ~~~~~~~~~~~i~~~---~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~ 334 (871)
.++..+++.++-..+ ...+++|+.|+|++|.+++..+ +. .+++|+.|+|++|++.+++. ++++++|+
T Consensus 243 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~------~~~l~~L~ 312 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LA--GLTALTNLELNENQLEDISP------ISNLKNLT 312 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCSCCGG------GGGCTTCS
T ss_pred CCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCCcccCchh------hcCCCCCC
Confidence 444444443332221 2335566667777776666543 33 56666677777666666431 55666666
Q ss_pred eeEee
Q 002880 335 SLGVD 339 (871)
Q Consensus 335 ~L~L~ 339 (871)
.|+++
T Consensus 313 ~L~L~ 317 (466)
T 1o6v_A 313 YLTLY 317 (466)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 66666
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=1.7e-11 Score=145.37 Aligned_cols=135 Identities=17% Similarity=0.269 Sum_probs=81.0
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+|+++.++. .+..+...+++|+.|+|++|.|+++. +..++.|++|+.|+|++|.+.+.. +..+..
T Consensus 52 ~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~ 121 (597)
T 3oja_B 52 NQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLP-----PHVFQN 121 (597)
T ss_dssp CCSEEEESSCEESE---ECTHHHHHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCC-----TTTTTT
T ss_pred CceEEEeeCCCCCC---cCHHHHccCCCCcEEECCCCCCCCCC--hHHhcCCCCCCEEECCCCcCCCCC-----HHHHcC
Confidence 46778888887765 23344566788888888888887642 346788888888888888886654 233356
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~ 314 (871)
+++|+.|+++.+...+ ++..+ ...+++|+.|+|++|.|++++|..|. .+++|+.|+|++|.
T Consensus 122 l~~L~~L~L~~n~l~~--------------l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 122 VPLLTVLVLERNDLSS--------------LPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNR 182 (597)
T ss_dssp CTTCCEEECCSSCCCC--------------CCTTT---TTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSC
T ss_pred CCCCCEEEeeCCCCCC--------------CCHHH---hccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCC
Confidence 7788877776553221 11111 01244555555555555555444444 45555555555555
Q ss_pred CCCc
Q 002880 315 LEQN 318 (871)
Q Consensus 315 L~~l 318 (871)
|.++
T Consensus 183 l~~~ 186 (597)
T 3oja_B 183 LTHV 186 (597)
T ss_dssp CSBC
T ss_pred CCCc
Confidence 5543
No 66
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.19 E-value=2.8e-11 Score=137.52 Aligned_cols=129 Identities=20% Similarity=0.218 Sum_probs=67.0
Q ss_pred CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccc
Q 002880 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (871)
Q Consensus 181 p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~ 260 (871)
++|+.|+|++|+++.. ++..++++++|+.|+|++|.+.+..+ .....+++|+.++++.+...+..
T Consensus 275 ~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~-------- 339 (455)
T 3v47_A 275 SGVKTCDLSKSKIFAL--LKSVFSHFTDLEQLTLAQNEINKIDD-----NAFWGLTHLLKLNLSQNFLGSID-------- 339 (455)
T ss_dssp SCCCEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCEEC--------
T ss_pred cCceEEEecCcccccc--chhhcccCCCCCEEECCCCcccccCh-----hHhcCcccCCEEECCCCccCCcC--------
Confidence 4566666666666543 23445566666666666666644331 11234455555554433211000
Q ss_pred cCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 261 ~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
......+++|+.|+|++|.|+++.|..|. .+++|+.|+|++|+|.+++.. .++++++|+.|+++
T Consensus 340 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 340 ---------SRMFENLDKLEVLDLSYNHIRALGDQSFL--GLPNLKELALDTNQLKSVPDG----IFDRLTSLQKIWLH 403 (455)
T ss_dssp ---------GGGGTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECC
T ss_pred ---------hhHhcCcccCCEEECCCCcccccChhhcc--ccccccEEECCCCccccCCHh----HhccCCcccEEEcc
Confidence 00112255666666666666666555555 566666666666666654422 34556666666665
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=2.8e-11 Score=131.30 Aligned_cols=170 Identities=19% Similarity=0.069 Sum_probs=100.8
Q ss_pred eeEEeecccccccccccccccc-ccCCCCcEeeccCCccccHHH-H-HHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 156 VKWLELEDADIGDDMLLSLNLS-SKFPDLQALSLCGNKLETVEI-I-VQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~-~~~p~L~~L~Ls~N~L~~~~~-i-~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
++.|+|++|+|....... +. ..+++|+.|+|++|+++.... + ...+..+++|+.|+|++|.+.+..+ ...
T Consensus 93 L~~L~l~~n~l~~~~~~~--~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-----~~~ 165 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPL--PLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-----EQV 165 (310)
T ss_dssp CCEEEEESCCCBSCCCCC--SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-----TSC
T ss_pred eeEEEeeCCEeccchhhh--hhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-----HHh
Confidence 667777777665422111 11 456677777777777664211 0 1234466777777777777654432 222
Q ss_pred hcCCCccccccccccccc------cccccccccccCCCCCCCcccc--------CCcCCccceeecCCccccccccccCC
Q 002880 233 QGCPKLEIYNSNFTINFG------EWALGFCGEVYDKDNPSSLCLR--------DRPLQSVTSLDLSNRCIHNLVNKAFS 298 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~------~~~l~~~~~~~~~~~~~~i~~~--------~~~l~~L~~LdLS~N~I~~l~p~~~~ 298 (871)
..+++|+.++++.+...+ ...+..+.++..+++.++-... ...+++|+.|+||+|.|++..|..+.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 356666666665543221 1112333445555554443321 12468899999999999998776665
Q ss_pred CC-CCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 299 PA-EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 299 ~~-~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.. .+++|++|+|++|+|..++.. + +++|+.|+|+
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~lp~~-----~--~~~L~~L~Ls 280 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQVPKG-----L--PAKLRVLDLS 280 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSCCSC-----C--CSCCSCEECC
T ss_pred hccCcCcCCEEECCCCCCCchhhh-----h--cCCCCEEECC
Confidence 11 247999999999999876532 2 4899999998
No 68
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2.2e-11 Score=121.18 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=32.9
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccc
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~ 220 (871)
..++.|+|++|+|+.. ..+...+|+|+.|+|++|+|+++ ..+++|++|+.|+|++|.|.
T Consensus 19 ~~L~~L~l~~n~l~~i----~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp TSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCC
T ss_pred CCceEEEeeCCCCchh----HHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCccc
Confidence 4456666666666531 12333344666666666666654 34556666666666666654
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.19 E-value=2.4e-11 Score=132.38 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=102.4
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+|+++.|++.... ...+++|+.|+|++|.++. ..++..+.+|++|+.|+|++|.+++.. .. ....
T Consensus 71 ~l~~L~l~~n~l~~~~~~----~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~----~~-~l~~ 140 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE----HFSPFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPI----VN-TLAK 140 (336)
T ss_dssp TCSEEECTTCEECSCCCS----CCCCBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBCCHHH----HH-HHTT
T ss_pred cceEEEcCCccccccchh----hccCCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCcccCHHH----HH-HHhc
Confidence 478899999988764322 3468999999999999874 236788999999999999999885432 23 3356
Q ss_pred CCCccccccccccccccc----cccccccccCCCCCCC-ccc------cCCcCC-ccceeecCCc--ccc-ccccccCCC
Q 002880 235 CPKLEIYNSNFTINFGEW----ALGFCGEVYDKDNPSS-LCL------RDRPLQ-SVTSLDLSNR--CIH-NLVNKAFSP 299 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~----~l~~~~~~~~~~~~~~-i~~------~~~~l~-~L~~LdLS~N--~I~-~l~p~~~~~ 299 (871)
+++|+.++++.+...+.. .+..|.++..+++.++ -.. ....++ +|+.|+|++| .++ +.++..+.
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~- 219 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR- 219 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-
Confidence 999999998877433221 1334444444444443 111 122344 5566666665 232 22233333
Q ss_pred CCCCCcceEeccCCC-CCCcchHHHHHHhcCCCCcceeEee
Q 002880 300 AEMPSLSHLNIRGNP-LEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 300 ~~l~~L~~LnLs~N~-L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++|+.|+|++|. +++ ..+..+.++++|+.|+++
T Consensus 220 -~~~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 220 -RCPNLVHLDLSDSVMLKN----DCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp -HCTTCSEEECTTCTTCCG----GGGGGGGGCTTCCEEECT
T ss_pred -hCCCCCEEeCCCCCcCCH----HHHHHHhCCCCCCEeeCC
Confidence 45566666666665 332 222344555666666655
No 70
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=2.8e-11 Score=125.16 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=99.0
Q ss_pred eEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCC
Q 002880 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (871)
Q Consensus 157 ~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp 236 (871)
+.+++++++|+.... . -.++|+.|+|++|+|+.+. +..+..+++|+.|+|++|.|.+..+.. +
T Consensus 14 ~~v~c~~~~l~~iP~---~---l~~~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~--------~- 76 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT---N---LPETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISELAPDA--------F- 76 (220)
T ss_dssp TEEECTTSCCSSCCS---S---CCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCCCEECTTT--------T-
T ss_pred CEEEcCCCCcCcCCC---c---cCcCCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcCCCcCHHH--------h-
Confidence 467888888876321 1 2378999999999999753 347889999999999999996554211 1
Q ss_pred CccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCC
Q 002880 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 237 ~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
..+++|+.|+|++|.|+++++..|. .+++|+.|+|++|+|.
T Consensus 77 -------------------------------------~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 77 -------------------------------------QGLRSLNSLVLYGNKITELPKSLFE--GLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------------------------TTCSSCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCC
T ss_pred -------------------------------------hCCcCCCEEECCCCcCCccCHhHcc--CCCCCCEEECCCCCCC
Confidence 2278899999999999999778787 8999999999999999
Q ss_pred CcchHHHHHHhcCCCCcceeEee
Q 002880 317 QNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 317 ~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+++. ..+.++++|+.|+|+
T Consensus 118 ~~~~----~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 118 CLRV----DAFQDLHNLNLLSLY 136 (220)
T ss_dssp CCCT----TTTTTCTTCCEEECC
T ss_pred EeCH----HHcCCCCCCCEEECC
Confidence 8653 368899999999998
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.19 E-value=5.5e-11 Score=138.44 Aligned_cols=168 Identities=18% Similarity=0.124 Sum_probs=99.1
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHH-HHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEI-IVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~-i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
..++.|+|++|.|.. .+..+...+++|+.|+|++|++++... .+..++.+++|+.|+|++|.+.+... .....
T Consensus 310 ~~L~~L~l~~n~l~~---ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~ 383 (549)
T 2z81_A 310 EKVKRITVENSKVFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK---TGEIL 383 (549)
T ss_dssp TTCCEEEEESSCCCC---CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH---HHHHG
T ss_pred ccceEEEeccCcccc---CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc---chhhh
Confidence 356777777777653 222333456777777777777764211 01225667777777777777644320 01234
Q ss_pred hcCCCcccccccccccccc-ccccccccccCCCCCCCcccc--CCcCCccceeecCCccccccccccCCCCCCCCcceEe
Q 002880 233 QGCPKLEIYNSNFTINFGE-WALGFCGEVYDKDNPSSLCLR--DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN 309 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~-~~l~~~~~~~~~~~~~~i~~~--~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~Ln 309 (871)
..+++|+.++++.+..... ..+..+..+..+++.++-... ....++|+.|+||+|.|++.+ . .+++|+.|+
T Consensus 384 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~--~l~~L~~L~ 457 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----L--FLPRLQELY 457 (549)
T ss_dssp GGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----C--CCTTCCEEE
T ss_pred hcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc----c--cCChhcEEE
Confidence 5666666666554422110 012223333333333332221 112368999999999998873 2 688999999
Q ss_pred ccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 310 Ls~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|++|+|+.++. ...+++|+.|+|+
T Consensus 458 Ls~N~l~~ip~------~~~l~~L~~L~Ls 481 (549)
T 2z81_A 458 ISRNKLKTLPD------ASLFPVLLVMKIS 481 (549)
T ss_dssp CCSSCCSSCCC------GGGCTTCCEEECC
T ss_pred CCCCccCcCCC------cccCccCCEEecC
Confidence 99999987652 3578999999998
No 72
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=7.1e-12 Score=147.92 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=63.3
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccc---ccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF---GEWAL 254 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~---~~~~l 254 (871)
..+++|+.|+|++|+++.....+..+.++++|+.|+|++|.+.+..+ .....+++|+.++++.+... +...+
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-----EAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-----TTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-----HHhcCCccCCeEECCCCcCCCcccchhh
Confidence 34455555555555555432223345555555555555555543321 11233445555444433221 11112
Q ss_pred cccccccCCCCCCCcccc-----CCcCCccceeecCCccccccc-c--ccCCCCCCCCcceEeccCCCCCCcchHHHHHH
Q 002880 255 GFCGEVYDKDNPSSLCLR-----DRPLQSVTSLDLSNRCIHNLV-N--KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV 326 (871)
Q Consensus 255 ~~~~~~~~~~~~~~i~~~-----~~~l~~L~~LdLS~N~I~~l~-p--~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~ 326 (871)
..+..+..+++.++...+ ...+++|+.|+|++|.|++.. + ..+. .+++|+.|+|++|++.++. +..
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~----~~~ 495 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--TLGRLEILVLSFCDLSSID----QHA 495 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG--GCTTCCEEECTTSCCCEEC----TTT
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc--cCCCccEEECCCCccCccC----hhh
Confidence 223333333332222111 122445555555555554421 1 2233 4555555555555554422 223
Q ss_pred hcCCCCcceeEee
Q 002880 327 LKGFPCLQSLGVD 339 (871)
Q Consensus 327 l~~lp~L~~L~L~ 339 (871)
++++++|+.|+++
T Consensus 496 ~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 496 FTSLKMMNHVDLS 508 (606)
T ss_dssp TTTCTTCCEEECC
T ss_pred hccccCCCEEECC
Confidence 4455555555554
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.18 E-value=5.8e-11 Score=128.77 Aligned_cols=170 Identities=17% Similarity=0.122 Sum_probs=91.7
Q ss_pred CceeEEeecccccccccc--ccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchh-H
Q 002880 154 GTVKWLELEDADIGDDML--LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED-A 230 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l--~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~-~ 230 (871)
..++.|+|++|.|+.... ....+ ..+++|+.|+|++|+|+.+ .+..++++++|+.|+|++|++.+.. ++.. .
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~ 191 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQAHSPAF--SCEQVRAFPALTSLDLSDNPGLGER--GLMAAL 191 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECCSSCCC--CTTSCCCCTTCCEEECCSCTTCHHH--HHHTTS
T ss_pred CCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCCCcchh--hHHHhccCCCCCEEECCCCCCccch--hhhHHH
Confidence 345566666666554111 11111 2455666666666655532 2234555556666666666553311 0100 0
Q ss_pred HhhcCCCcccccccccccc--ccc---cccccccccCCCCCCCcccc-----CCc---CCccceeecCCccccccccccC
Q 002880 231 ILQGCPKLEIYNSNFTINF--GEW---ALGFCGEVYDKDNPSSLCLR-----DRP---LQSVTSLDLSNRCIHNLVNKAF 297 (871)
Q Consensus 231 i~~~lp~Le~lnl~~t~~~--~~~---~l~~~~~~~~~~~~~~i~~~-----~~~---l~~L~~LdLS~N~I~~l~p~~~ 297 (871)
....+++|+.++++.++.. +.. .+..+..+..+++.++-..+ ... +++|+.|+|++|+|+.+ |..+
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~ 270 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL 270 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC
T ss_pred hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh
Confidence 1134555555555444321 000 01122333333333322221 112 36999999999999976 5443
Q ss_pred CCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 298 SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 298 ~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+++|+.|+|++|+|++++ .+..+++|+.|+++
T Consensus 271 ----~~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 271 ----PAKLRVLDLSSNRLNRAP------QPDELPEVDNLTLD 302 (310)
T ss_dssp ----CSCCSCEECCSCCCCSCC------CTTSCCCCSCEECS
T ss_pred ----cCCCCEEECCCCcCCCCc------hhhhCCCccEEECc
Confidence 379999999999999864 25788999999987
No 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.18 E-value=2e-11 Score=145.99 Aligned_cols=246 Identities=10% Similarity=0.100 Sum_probs=145.9
Q ss_pred HHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCC-CCcchhhHHHhhhcccccCCCCceeEEeecccccccccc
Q 002880 93 QLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENG-TKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDML 171 (871)
Q Consensus 93 ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~l 171 (871)
++..+|.-..+|.+|..+|++.|. +...+. ...-.. ......+.|-...+ -.+...++.|+|++|.+...-
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~---~~~~~~~~~~~~~~~ip~~l~---~~~l~~L~~L~L~~n~l~~~~- 265 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSP-FVAENI---CEAWENENSEYAQQYKTEDLK---WDNLKDLTDVEVYNCPNLTKL- 265 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGB---SSSCSCTTSHHHHHHTTSCCC---GGGCTTCCEEEEECCTTCSSC-
T ss_pred CCccCCHHHhcccCCCEEECcCCc-cccccc---cccccccccchhcccCchhhh---hcccCCCCEEEecCCcCCccC-
Confidence 566788888899999999988773 332000 000000 00000000000100 002356899999999876522
Q ss_pred ccccccccCCCCcEeeccCCc-cccHHHHHHHHhcC------CCCCeeeCCCCcccccccccchh-HHhhcCCCcccccc
Q 002880 172 LSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKL------KNLRALWLNNNPVLKKCDHCMED-AILQGCPKLEIYNS 243 (871)
Q Consensus 172 ~~~~l~~~~p~L~~L~Ls~N~-L~~~~~i~~~l~~L------~~Lk~L~Ls~N~l~~~~~~~~~~-~i~~~lp~Le~lnl 243 (871)
+ ....++++|+.|+|++|+ |+. ..+|..+++| ++|+.|+|++|.++... . .....+++|+.+++
T Consensus 266 -p-~~l~~l~~L~~L~Ls~n~~l~~-~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip-----~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 266 -P-TFLKALPEMQLINVACNRGISG-EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP-----VETSLQKMKKLGMLEC 337 (636)
T ss_dssp -C-TTTTTCSSCCEEECTTCTTSCH-HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC-----CHHHHTTCTTCCEEEC
T ss_pred -h-HHHhcCCCCCEEECcCCCCCcc-ccchHHHHhhhccccCCCCCEEECCCCcCCccC-----chhhhccCCCCCEEeC
Confidence 2 334678999999999998 873 1467777776 99999999999996322 2 13456788887776
Q ss_pred ccc---cccccccccccccccCCCCCCCc----cccCCcCCc-cceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 244 NFT---INFGEWALGFCGEVYDKDNPSSL----CLRDRPLQS-VTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 244 ~~t---~~~~~~~l~~~~~~~~~~~~~~i----~~~~~~l~~-L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
+.+ |..+ .+..+.++..+++.++- ......+++ |+.|+|++|.|+.+ |..+....+++|+.|+|++|.+
T Consensus 338 ~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 338 LYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCT
T ss_pred cCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcC
Confidence 554 3333 44444555555554432 222334666 88888888888854 6666533455888888888888
Q ss_pred CCcchHHHHHHhc-------CCCCcceeEeeCCCCCCchhhHHhhhCCCccccc
Q 002880 316 EQNSVRELLEVLK-------GFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362 (871)
Q Consensus 316 ~~l~~~~i~~~l~-------~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~Ln 362 (871)
.+ .+|..+. .+++|+.|+++-.. +......+...+++|+.|+
T Consensus 415 ~~----~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 415 GS----VDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSIN 463 (636)
T ss_dssp TT----TTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEE
T ss_pred CC----cchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEE
Confidence 76 2333445 66788888887111 1111123444566666553
No 75
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=1.2e-11 Score=146.09 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=22.5
Q ss_pred HHHHHhhChhHHHHHHhhhccccCCC
Q 002880 90 AFSQLQEVPGLAQRMASLMCVDTDLD 115 (871)
Q Consensus 90 ~~~ql~~~p~L~~rl~~l~~i~~~~~ 115 (871)
-.++|..+|.-...+.+|..++++.+
T Consensus 357 s~n~L~~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 357 SVEKSTVLQSELESCKELQELEPENK 382 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ChhhHHhhHHHHHHHHHHHHhccccc
Confidence 46789999999999999999988665
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=1.4e-11 Score=134.84 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=127.6
Q ss_pred HhhC-hhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccccccccc
Q 002880 94 LQEV-PGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLL 172 (871)
Q Consensus 94 l~~~-p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~~l~ 172 (871)
+..+ |+-...|.+|..++++.+ .+..+.. + .=++...++.|+|++|.|+....
T Consensus 66 i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---------------~---------~~~~l~~L~~L~L~~n~l~~l~~- 119 (332)
T 2ft3_A 66 ISELRKDDFKGLQHLYALVLVNN-KISKIHE---------------K---------AFSPLRKLQKLYISKNHLVEIPP- 119 (332)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCCEECG---------------G---------GSTTCTTCCEEECCSSCCCSCCS-
T ss_pred CCccCHhHhhCCCCCcEEECCCC-ccCccCH---------------h---------HhhCcCCCCEEECCCCcCCccCc-
Confidence 4444 335567778888888776 2322211 0 01123568899999998874221
Q ss_pred cccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccc--cccccchhHHhhcCCCccccccccccccc
Q 002880 173 SLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK--KCDHCMEDAILQGCPKLEIYNSNFTINFG 250 (871)
Q Consensus 173 ~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~--~~~~~~~~~i~~~lp~Le~lnl~~t~~~~ 250 (871)
..+++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.. ..++.+ ..+ +|+.++++.+....
T Consensus 120 -----~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 120 -----NLPSSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAF-----DGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp -----SCCTTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSS-----CSC-CCSCCBCCSSBCSS
T ss_pred -----cccccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccc-----cCC-ccCEEECcCCCCCc
Confidence 12378999999999888642 2457888999999999998853 221111 222 55555554432211
Q ss_pred cccccccccccCCCCCCCccc-----cCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHH
Q 002880 251 EWALGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE 325 (871)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~ 325 (871)
........+..+++.++... ....+++|+.|+|++|.|+++.+..+. .+++|+.|+|++|+|..++ .
T Consensus 187 -l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp-----~ 258 (332)
T 2ft3_A 187 -IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS--FLPTLRELHLDNNKLSRVP-----A 258 (332)
T ss_dssp -CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--GCTTCCEEECCSSCCCBCC-----T
T ss_pred -cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--CCCCCCEEECCCCcCeecC-----h
Confidence 11111233444444333222 234578899999999999999777787 8999999999999998654 3
Q ss_pred HhcCCCCcceeEee
Q 002880 326 VLKGFPCLQSLGVD 339 (871)
Q Consensus 326 ~l~~lp~L~~L~L~ 339 (871)
.+.++++|+.|+++
T Consensus 259 ~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 259 GLPDLKLLQVVYLH 272 (332)
T ss_dssp TGGGCTTCCEEECC
T ss_pred hhhcCccCCEEECC
Confidence 47889999999998
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.16 E-value=7.9e-11 Score=135.38 Aligned_cols=154 Identities=22% Similarity=0.143 Sum_probs=95.2
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+... ...+++|+.|+|++|+|++++ ++++++|+.|+|++|.+.+.. ..
T Consensus 64 ~~L~~L~Ls~n~l~~~~------~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~L~~L~L~~N~l~~l~--------~~ 124 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD------LSQNTNLTYLACDSNKLTNLD-----VTPLTKLTYLNCDTNKLTKLD--------VS 124 (457)
T ss_dssp TTCSEEECCSSCCSCCC------CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECCSSCCSCCC--------CT
T ss_pred CCCCEEEccCCcCCeEc------cccCCCCCEEECcCCCCceee-----cCCCCcCCEEECCCCcCCeec--------CC
Confidence 45677777777776631 345677777777777777641 667777777777777775532 24
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCc-cc--cCCcCCccceeecCCccccccccccCCCCCCCCcceEec
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSL-CL--RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i-~~--~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnL 310 (871)
.+++|+.++++.+...+ ..+..|..+..+++..+- .. ....+++|+.|+|++|.|+++ | +. .+++|+.|+|
T Consensus 125 ~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~--l~--~l~~L~~L~l 198 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D--VS--QNKLLNRLNC 198 (457)
T ss_dssp TCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C--CT--TCTTCCEEEC
T ss_pred CCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-c--cc--cCCCCCEEEC
Confidence 56666666655443222 123444444444444331 11 133466778888888888776 3 44 6777788888
Q ss_pred cCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 311 RGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 311 s~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++|+|.+++ ++++++|+.|+++
T Consensus 199 ~~N~l~~~~-------l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 199 DTNNITKLD-------LNQNIQLTFLDCS 220 (457)
T ss_dssp CSSCCSCCC-------CTTCTTCSEEECC
T ss_pred cCCcCCeec-------cccCCCCCEEECc
Confidence 887777642 5677777777777
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.16 E-value=1.5e-10 Score=132.81 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=80.0
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.+.+.. ....+++|+.|+|++|.++.... ++.+++|+.|+|++|.+.+.. ...
T Consensus 177 ~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~-------~l~ 240 (466)
T 1o6v_A 177 TTLERLDISSNKVSDIS-----VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIG-------TLA 240 (466)
T ss_dssp TTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCG-------GGG
T ss_pred CCCCEEECcCCcCCCCh-----hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccch-------hhh
Confidence 56788888888776531 23456666666666666665422 555666666666666664431 123
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCcccc---CCcCCccceeecCCccccccccccCCCCCCCCcceEec
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR---DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~---~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnL 310 (871)
.+++|+.++++.+...+...+..|..+..+++.++-..+ ...+++|+.|+|++|.+.++.+ +. .+++|+.|+|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~L 316 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--IS--NLKNLTYLTL 316 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GG--GCTTCSEEEC
T ss_pred cCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hc--CCCCCCEEEC
Confidence 455555555444332222223333333333333322111 2234455555555555555433 22 4555555555
Q ss_pred cCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 311 RGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 311 s~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++|++.+++. ++.+++|+.|+++
T Consensus 317 ~~n~l~~~~~------~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 317 YFNNISDISP------VSSLTKLQRLFFY 339 (466)
T ss_dssp CSSCCSCCGG------GGGCTTCCEEECC
T ss_pred cCCcCCCchh------hccCccCCEeECC
Confidence 5555554321 3445555555554
No 79
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.16 E-value=5.5e-11 Score=123.68 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=93.7
Q ss_pred CcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccccC
Q 002880 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYD 262 (871)
Q Consensus 183 L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~ 262 (871)
.+.++.++|++++++. .-.++|+.|+|++|.|.+..+ ..+..+++|+.++++.+...
T Consensus 21 ~~~v~c~~~~l~~ip~-----~~~~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~N~l~------------- 77 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-----GIPTNAQILYLHDNQITKLEP-----GVFDSLINLKELYLGSNQLG------------- 77 (229)
T ss_dssp TTEEECTTSCCSSCCS-----CCCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC-------------
T ss_pred CCEeEccCCCcCccCC-----CCCCCCCEEEcCCCccCccCH-----HHhhCccCCcEEECCCCCCC-------------
Confidence 4568888888876532 223899999999999987653 23356888888887754321
Q ss_pred CCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 263 KDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 263 ~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.++... ...+++|+.|+|++|.|+++++..|. .+++|+.|+|++|+|..++ ..+.++++|+.|+|+
T Consensus 78 -~i~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L~Ls~N~l~~lp-----~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 78 -ALPVGV---FDSLTQLTVLDLGTNQLTVLPSAVFD--RLVHLKELFMCCNKLTELP-----RGIERLTHLTHLALD 143 (229)
T ss_dssp -CCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCSCC-----TTGGGCTTCSEEECC
T ss_pred -CcChhh---cccCCCcCEEECCCCcCCccChhHhC--cchhhCeEeccCCcccccC-----cccccCCCCCEEECC
Confidence 111111 13478999999999999999888887 8999999999999999754 356899999999998
No 80
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=2.4e-11 Score=122.98 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=74.9
Q ss_pred eEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCC
Q 002880 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (871)
Q Consensus 157 ~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp 236 (871)
+.+++++++|+.... . ..++|+.|+|++|+|+.+.. ...++++++|+.|+|++|.|++..++.| ..
T Consensus 11 ~~l~~s~~~l~~ip~---~---~~~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~-- 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR---D---IPLHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAF-----EG-- 76 (192)
T ss_dssp TEEECTTSCCSSCCS---C---CCTTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTTTT-----TT--
T ss_pred CEEEcCCCCcCcCcc---C---CCCCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCCCcCHhHc-----CC--
Confidence 467888888865221 1 23488888888888875421 0137888888888888888866542111 12
Q ss_pred CccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCC
Q 002880 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 237 ~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
+++|+.|+|++|.|+++.+..|. .+++|++|+|++|+|.
T Consensus 77 ---------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 77 ---------------------------------------ASHIQELQLGENKIKEISNKMFL--GLHQLKTLNLYDNQIS 115 (192)
T ss_dssp ---------------------------------------CTTCCEEECCSCCCCEECSSSST--TCTTCCEEECCSSCCC
T ss_pred ---------------------------------------cccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCC
Confidence 44566666666666666555555 5566666666666665
Q ss_pred CcchHHHHHHhcCCCCcceeEee
Q 002880 317 QNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 317 ~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++. +..+..+++|+.|+|+
T Consensus 116 ~~~----~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 116 CVM----PGSFEHLNSLTSLNLA 134 (192)
T ss_dssp EEC----TTSSTTCTTCCEEECT
T ss_pred eeC----HHHhhcCCCCCEEEeC
Confidence 532 2244555566666555
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.16 E-value=3.1e-11 Score=124.89 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=98.4
Q ss_pred eEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCC
Q 002880 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (871)
Q Consensus 157 ~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp 236 (871)
+.+++++++|+... . .-.+.++.|+|++|+|+.+.. ...+.++++|+.|+|++|.|.+..++.|
T Consensus 14 ~~l~~s~n~l~~iP---~---~~~~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~--------- 77 (220)
T 2v70_A 14 TTVDCSNQKLNKIP---E---HIPQYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEGAF--------- 77 (220)
T ss_dssp TEEECCSSCCSSCC---S---CCCTTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCCEECTTTT---------
T ss_pred CEeEeCCCCcccCc---c---CCCCCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCCEECHHHh---------
Confidence 47889999887622 1 124578999999999986521 1347899999999999999965542111
Q ss_pred CccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCC
Q 002880 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 237 ~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
..+++|+.|+|++|.|+++++..|. .+++|+.|+|++|+|.
T Consensus 78 -------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 78 -------------------------------------EGASGVNEILLTSNRLENVQHKMFK--GLESLKTLMLRSNRIT 118 (220)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCCCCGGGGT--TCSSCCEEECTTSCCC
T ss_pred -------------------------------------CCCCCCCEEECCCCccCccCHhHhc--CCcCCCEEECCCCcCC
Confidence 2277899999999999999888888 8999999999999999
Q ss_pred CcchHHHHHHhcCCCCcceeEee
Q 002880 317 QNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 317 ~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+++ +..+.++++|+.|+|+
T Consensus 119 ~~~----~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 119 CVG----NDSFIGLSSVRLLSLY 137 (220)
T ss_dssp CBC----TTSSTTCTTCSEEECT
T ss_pred eEC----HhHcCCCccCCEEECC
Confidence 864 3467899999999998
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.16 E-value=1.9e-11 Score=138.99 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=92.7
Q ss_pred ceeEEeeccccccccccccc-cccccCCCCcEeeccCCccccHH--HHHHHHh-cCCCCCeeeCCCCcccccccccchhH
Q 002880 155 TVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVE--IIVQEVT-KLKNLRALWLNNNPVLKKCDHCMEDA 230 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~-~l~~~~p~L~~L~Ls~N~L~~~~--~i~~~l~-~L~~Lk~L~Ls~N~l~~~~~~~~~~~ 230 (871)
.++.|+|++|+|++.+...+ .....+++|+.|+|++|.+++.+ .+...+. .+++|+.|+|++|.+++.....+. .
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA-S 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH-H
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH-H
Confidence 46777777777766442222 23455667777777777765322 1111111 244566666666666443211122 2
Q ss_pred HhhcCCCcccccccccccccc--cccc-----ccccccCCCCCCCcccc---------CCcCCccceeecCCccccccc-
Q 002880 231 ILQGCPKLEIYNSNFTINFGE--WALG-----FCGEVYDKDNPSSLCLR---------DRPLQSVTSLDLSNRCIHNLV- 293 (871)
Q Consensus 231 i~~~lp~Le~lnl~~t~~~~~--~~l~-----~~~~~~~~~~~~~i~~~---------~~~l~~L~~LdLS~N~I~~l~- 293 (871)
....+++|+.++++.+..... ..+. .+..+..+++.++-... ...+++|+.|+|++|.|++..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 223456666666554431110 0010 01133333333332111 123567777777777766532
Q ss_pred ----cccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 294 ----NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 294 ----p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+..+. .+++|+.|+|++|.|++.....++..+.++++|++|+++
T Consensus 245 ~~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 245 AELCPGLLH--PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp HHHHHHHTS--TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHhc--CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 11122 466777777777777665555566666777777777776
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.15 E-value=1.4e-11 Score=134.09 Aligned_cols=170 Identities=17% Similarity=0.063 Sum_probs=84.1
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccc--------
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH-------- 225 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~-------- 225 (871)
..++.|+|++|+|++.. .+....+++|+.|+|++|+|++... +..+++|+.|+|++|.+.+....
T Consensus 34 ~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCC---HHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCC---HHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence 34677777777776522 1233566777777777777765321 67777777777777777543210
Q ss_pred ---cchhHHhhcCCCccccccccccccc--cccccccccccCCCCCCCcccc-----C-CcCCccceeecCCcccccccc
Q 002880 226 ---CMEDAILQGCPKLEIYNSNFTINFG--EWALGFCGEVYDKDNPSSLCLR-----D-RPLQSVTSLDLSNRCIHNLVN 294 (871)
Q Consensus 226 ---~~~~~i~~~lp~Le~lnl~~t~~~~--~~~l~~~~~~~~~~~~~~i~~~-----~-~~l~~L~~LdLS~N~I~~l~p 294 (871)
.+.......+++|+.++++.+...+ ...+..+..+..+++.++-..+ . ..+++|+.|+|++|.|+++.+
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 0000001223444444433332111 1122223333333333322211 0 124555566666666555521
Q ss_pred ccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 295 KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 295 ~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
. . .+++|+.|+|++|+|.+++. .+..+++|+.|+++
T Consensus 187 ~--~--~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 187 Q--V--VFAKLKTLDLSSNKLAFMGP-----EFQSAAGVTWISLR 222 (317)
T ss_dssp C--C--CCTTCCEEECCSSCCCEECG-----GGGGGTTCSEEECT
T ss_pred c--c--ccccCCEEECCCCcCCcchh-----hhcccCcccEEECc
Confidence 1 1 25566666666666655332 24556666666665
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=3.1e-11 Score=120.06 Aligned_cols=134 Identities=18% Similarity=0.182 Sum_probs=101.3
Q ss_pred cccCCCCcEeeccCCccccHHHHHHHHhcCC-CCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccc
Q 002880 177 SSKFPDLQALSLCGNKLETVEIIVQEVTKLK-NLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALG 255 (871)
Q Consensus 177 ~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~-~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~ 255 (871)
...+++|+.|+|++|+|+.++ .+..+. +|+.|+|++|.+.+.. .
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~----~~~~~~~~L~~L~Ls~N~l~~~~----------~--------------------- 59 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIE----NLGATLDQFDAIDFSDNEIRKLD----------G--------------------- 59 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCC----CGGGGTTCCSEEECCSSCCCEEC----------C---------------------
T ss_pred cCCcCCceEEEeeCCCCchhH----HhhhcCCCCCEEECCCCCCCccc----------c---------------------
Confidence 356899999999999999752 355555 9999999999985431 1
Q ss_pred ccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcce
Q 002880 256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335 (871)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~ 335 (871)
...+++|+.|+|++|.|+++++..+. .+++|++|+|++|+|..++. ...++++++|+.
T Consensus 60 -----------------l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~ 117 (176)
T 1a9n_A 60 -----------------FPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLVELGD---LDPLASLKSLTY 117 (176)
T ss_dssp -----------------CCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCE
T ss_pred -----------------cccCCCCCEEECCCCcccccCcchhh--cCCCCCEEECCCCcCCcchh---hHhhhcCCCCCE
Confidence 12277899999999999988666556 79999999999999987552 125788999999
Q ss_pred eEeeCC--CCCCchhhHHhhhCCCcccccCcccc
Q 002880 336 LGVDIP--GPLGESAIEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 336 L~L~iP--~~l~~~~~~Il~~L~~L~~Ln~~~vs 367 (871)
|+++-. ..++.....++..+++|+.|+.....
T Consensus 118 L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999811 12223334478899999999988877
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.15 E-value=1.8e-11 Score=127.56 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=62.3
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCc-cccHHHHHHHHhcCCCCCeeeCCC-CcccccccccchhHH
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNN-NPVLKKCDHCMEDAI 231 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~-L~~~~~i~~~l~~L~~Lk~L~Ls~-N~l~~~~~~~~~~~i 231 (871)
..++.|+|++|+|+... ......+++|+.|+|++|+ ++.++ +..+.+|++|+.|+|++ |.+.+..+ ..
T Consensus 31 ~~l~~L~l~~n~l~~i~---~~~~~~l~~L~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~l~~~n~l~~i~~-----~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP---SHAFSNLPNISRIYVSIDVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDP-----DA 100 (239)
T ss_dssp TTCCEEEEESCCCSEEC---TTTTTTCTTCCEEEEECCSSCCEEC--TTTEESCTTCCEEEEEEETTCCEECT-----TS
T ss_pred CcccEEEEeCCcceEEC---HHHccCCCCCcEEeCCCCCCcceeC--HhHcCCCcCCcEEECCCCCCeeEcCH-----HH
Confidence 36889999999988632 2334678999999999997 87653 24688999999999998 99976542 23
Q ss_pred hhcCCCccccccccc
Q 002880 232 LQGCPKLEIYNSNFT 246 (871)
Q Consensus 232 ~~~lp~Le~lnl~~t 246 (871)
+..+++|+.++++.+
T Consensus 101 f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT 115 (239)
T ss_dssp EECCTTCCEEEEEEE
T ss_pred hCCCCCCCEEeCCCC
Confidence 346788888887654
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.14 E-value=4.6e-11 Score=140.96 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=128.6
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
...++.|+|++|.+......+ .....+++|+.|+|++|+++++ .+..+.++++|+.|+|++|.+.+..+ ....
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~ 421 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCN-LQLRNLSHLQSLNLSYNEPLSL--KTEAFKECPQLELLDLAFTRLKVKDA----QSPF 421 (606)
T ss_dssp CTTCCEEECCSSCCCEEEEST-TTTTTCTTCCEEECCSCSCEEE--CTTTTTTCTTCSEEECTTCCEECCTT----CCTT
T ss_pred cCcCCEEECCCCccccccCcc-hhcccCCCCCEEECCCCcCCcC--CHHHhcCCccCCeEECCCCcCCCccc----chhh
Confidence 356888888888887633111 2346789999999999999865 35678899999999999999976532 2223
Q ss_pred hcCCCccccccccccccc--cccccccccccCCCCCCCccc--------cCCcCCccceeecCCccccccccccCCCCCC
Q 002880 233 QGCPKLEIYNSNFTINFG--EWALGFCGEVYDKDNPSSLCL--------RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEM 302 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~--~~~l~~~~~~~~~~~~~~i~~--------~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l 302 (871)
..+++|+.++++.+...+ ...+..+.++..+++.++-.. ....+++|+.|+|++|.|++.+|..|. .+
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l 499 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT--SL 499 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT--TC
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc--cc
Confidence 568888888877664332 223445666666666655332 134578999999999999999888888 89
Q ss_pred CCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 303 PSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 303 ~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++|+.|+|++|++.++. +..+.++++| .|+++
T Consensus 500 ~~L~~L~Ls~N~l~~~~----~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSS----IEALSHLKGI-YLNLA 531 (606)
T ss_dssp TTCCEEECCSSCCCGGG----GGGGTTCCSC-EEECC
T ss_pred cCCCEEECCCCccCcCC----hhHhCccccc-EEECc
Confidence 99999999999999843 5578888999 88887
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=8.5e-11 Score=140.75 Aligned_cols=164 Identities=23% Similarity=0.295 Sum_probs=91.4
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCcccc------------------------HHHHHHHHhcCCCC
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLET------------------------VEIIVQEVTKLKNL 209 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~------------------------~~~i~~~l~~L~~L 209 (871)
..++.|+|++|.|... .+......+++|+.|+|++|+++. ++.+|..+.+|++|
T Consensus 405 ~~L~~L~L~~N~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQE--LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TTCCEEECCSSCCEEE--CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCEEeCCCCcCccc--cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 5688888888877541 111122345555555555555543 33334444555555
Q ss_pred CeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccc
Q 002880 210 RALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCI 289 (871)
Q Consensus 210 k~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I 289 (871)
+.|+|++|.+++.. +..+.++++|+.++++.+...+.+. ...|.........+++|+.|+|++|.|
T Consensus 483 ~~L~Ls~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 483 TILDLSNNNIANIN-----DDMLEGLEKLEILDLQHNNLARLWK---------HANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp CEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCGGGGS---------TTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCcCC-----hhhhccccccCEEeCCCCCccccch---------hhccCCcchhhcCCCCCCEEECCCCCC
Confidence 55555555554332 1122344444444443332111000 000000000124567888888888888
Q ss_pred cccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 290 HNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 290 ~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+.+++..|. .+++|+.|+|++|+|++++.. .+.++++|+.|+++
T Consensus 549 ~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 549 DEIPVEVFK--DLFELKIIDLGLNNLNTLPAS----VFNNQVSLKSLNLQ 592 (680)
T ss_dssp CCCCTTTTT--TCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECT
T ss_pred CCCCHHHcc--cccCcceeECCCCCCCcCCHh----HhCCCCCCCEEECC
Confidence 877666777 788888888888888876643 56778888888887
No 88
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.14 E-value=1.4e-10 Score=133.25 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=122.1
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
...++.|+|++|.|+... ...+++|+.|+|++|+|+.++ ++++++|+.|+|++|.+.+.. .
T Consensus 84 l~~L~~L~Ls~N~l~~~~------~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~--------l 144 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID--------V 144 (457)
T ss_dssp CTTCSEEECCSSCCSCCC------CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC--------C
T ss_pred CCCCCEEECcCCCCceee------cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec--------c
Confidence 357899999999998742 457899999999999999752 899999999999999997643 3
Q ss_pred hcCCCccccccccccccccccccccccccCCCCCCCcccc--CCcCCccceeecCCccccccccccCCCCCCCCcceEec
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR--DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~--~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnL 310 (871)
..+++|+.++++.+...+...+..+..+..+++..+-..+ ...+++|+.|+|++|.|+++ .+. .+++|+.|+|
T Consensus 145 ~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~--~l~~L~~L~L 219 (457)
T 3bz5_A 145 SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLN--QNIQLTFLDC 219 (457)
T ss_dssp TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCT--TCTTCSEEEC
T ss_pred ccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccc--cCCCCCEEEC
Confidence 5788888888877755555555566666666655443332 34567899999999999987 254 7899999999
Q ss_pred cCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 311 RGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 311 s~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++|+|.+++ ++.+++|+.|+++
T Consensus 220 s~N~l~~ip-------~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 220 SSNKLTEID-------VTPLTQLTYFDCS 241 (457)
T ss_dssp CSSCCSCCC-------CTTCTTCSEEECC
T ss_pred cCCcccccC-------ccccCCCCEEEee
Confidence 999999854 6788999999998
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.13 E-value=5.2e-11 Score=126.61 Aligned_cols=137 Identities=17% Similarity=0.210 Sum_probs=85.5
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+... ......+++|+.|+|++|.|+.+. +..+.++++|+.|+|++|.+.+..+.. ..
T Consensus 52 ~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~ 121 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIE---DGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFP-----IG 121 (276)
T ss_dssp TTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTSCCCCSTTCC-----CT
T ss_pred cCCcEEECCCCcCCccC---HHHccCCcCCCEEECCCCccCccC--hhhhcCCccccEEECCCCCccccCchh-----cc
Confidence 56889999999887532 223467889999999999998652 356888999999999999987654212 35
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcc----eEe
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS----HLN 309 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~----~Ln 309 (871)
.+++|+.++++.+..... ..+..+ ..+++|+.|+|++|.|+++.+..+. .+++|+ .|+
T Consensus 122 ~l~~L~~L~l~~n~l~~~------------~l~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~l~l~L~ 183 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSF------------KLPEYF----SNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLD 183 (276)
T ss_dssp TCTTCCEEECCSSCCCCC------------CCCGGG----GGCTTCCEEECCSSCCCEECGGGGH--HHHTCTTCCEEEE
T ss_pred cCCCCCEEECcCCcccee------------cCchhh----ccCCCCCEEECCCCCCCcCCHHHhh--hhhhccccceeee
Confidence 678888888765532210 011111 2245556666666666555444443 333333 555
Q ss_pred ccCCCCCCc
Q 002880 310 IRGNPLEQN 318 (871)
Q Consensus 310 Ls~N~L~~l 318 (871)
|++|++.++
T Consensus 184 ls~n~l~~~ 192 (276)
T 2z62_A 184 LSLNPMNFI 192 (276)
T ss_dssp CCSSCCCEE
T ss_pred cCCCccccc
Confidence 555555543
No 90
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.13 E-value=3.2e-11 Score=140.74 Aligned_cols=150 Identities=21% Similarity=0.181 Sum_probs=108.9
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccc---ccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF---GEWAL 254 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~---~~~~l 254 (871)
..+|+|+.|+|++|+++..+..+..+..+++|+.|+|++|.+.+..+ . ...+++|+.++++.+... +...+
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-----N-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-----E-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-----c-ccccCCCCEEEccCCccccccchhhh
Confidence 56889999999999988654335678889999999999998866442 1 356788888887665432 22234
Q ss_pred cccccccCCCCCCCccc-----cCCcCCccceeecCCcccc-ccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhc
Q 002880 255 GFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIH-NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328 (871)
Q Consensus 255 ~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~-~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~ 328 (871)
..+.++..+++.++... ....+++|+.|+|++|.++ +.+|..+. .+++|+.|+|++|++.++. +..+.
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~--~l~~L~~L~l~~n~l~~~~----~~~~~ 491 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLS----PTAFN 491 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTSCCCEEC----TTTTT
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh--cccCCCEEECCCCccccCC----hhhhh
Confidence 55566666666554322 2345778999999999987 56677777 7899999999999988743 34678
Q ss_pred CCCCcceeEee
Q 002880 329 GFPCLQSLGVD 339 (871)
Q Consensus 329 ~lp~L~~L~L~ 339 (871)
++++|+.|+++
T Consensus 492 ~l~~L~~L~l~ 502 (570)
T 2z63_A 492 SLSSLQVLNMA 502 (570)
T ss_dssp TCTTCCEEECC
T ss_pred cccCCCEEeCC
Confidence 88999999988
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=136.82 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=55.1
Q ss_pred CcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 274 ~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..+++|+.|+|++|.|++.+|..+. .+++|+.|+|++|+|.+ ...++..++++++|++|+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECC
T ss_pred hhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCc--cccchHHHhhCCCCCEEECC
Confidence 4678899999999999998888887 89999999999999998 44778889999999999998
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=2.8e-11 Score=137.54 Aligned_cols=211 Identities=17% Similarity=0.095 Sum_probs=113.3
Q ss_pred ceeEEeeccccccccccccc-cccccCCCCcEeeccCCccccHHH--HHHHH-hcCCCCCeeeCCCCcccccccccchhH
Q 002880 155 TVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEI--IVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDA 230 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~-~l~~~~p~L~~L~Ls~N~L~~~~~--i~~~l-~~L~~Lk~L~Ls~N~l~~~~~~~~~~~ 230 (871)
.++.|+|++|+|++.....+ .....+++|+.|+|++|.|++.+. +...+ ..+++|+.|+|++|.++......+..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~- 278 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR- 278 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH-
Confidence 46666666666665432221 123355666666666666654321 11212 24566666666666554321111222
Q ss_pred HhhcCCCcccccccccccccc--cccc-----ccccccCCCCCCCccc---------cCCcCCccceeecCCcccccccc
Q 002880 231 ILQGCPKLEIYNSNFTINFGE--WALG-----FCGEVYDKDNPSSLCL---------RDRPLQSVTSLDLSNRCIHNLVN 294 (871)
Q Consensus 231 i~~~lp~Le~lnl~~t~~~~~--~~l~-----~~~~~~~~~~~~~i~~---------~~~~l~~L~~LdLS~N~I~~l~p 294 (871)
....+++|+.++++.+..... ..+. .+..+..+++..+-.. ....+++|+.|+|++|.|++..+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 223455555555544422110 0000 0012222333222211 11235789999999999987654
Q ss_pred ccCCC---CCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchh-----hHHhhhCCCcccccCccc
Q 002880 295 KAFSP---AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA-----IEILESLPTLCTLNGVTA 366 (871)
Q Consensus 295 ~~~~~---~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~-----~~Il~~L~~L~~Ln~~~v 366 (871)
..+.. ..+++|+.|+|++|.+.+.....++..+.++++|++|+++-. .++... ..++...++|+.|.-.+.
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 43320 126799999999999987666678888999999999999833 233322 223334455777766665
Q ss_pred c
Q 002880 367 S 367 (871)
Q Consensus 367 s 367 (871)
+
T Consensus 438 ~ 438 (461)
T 1z7x_W 438 Y 438 (461)
T ss_dssp C
T ss_pred c
Confidence 5
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.12 E-value=1.2e-10 Score=118.69 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=105.5
Q ss_pred EEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCC
Q 002880 158 WLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237 (871)
Q Consensus 158 ~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~ 237 (871)
.++.+++++.... ....++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+.. ...+..+++
T Consensus 11 ~v~c~~~~l~~~p------~~~~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~ 77 (208)
T 2o6s_A 11 TVECYSQGRTSVP------TGIPAQTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQSLP-----NGVFNKLTS 77 (208)
T ss_dssp EEECCSSCCSSCC------SCCCTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCC-----TTTTTTCTT
T ss_pred EEEecCCCccCCC------CCCCCCCcEEEcCCCccCcCC--hhhhcccccCcEEECCCCccCccC-----hhhcCCCCC
Confidence 4566677766532 122578999999999999653 355789999999999999997554 333456788
Q ss_pred ccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCC
Q 002880 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317 (871)
Q Consensus 238 Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~ 317 (871)
|+.++++.+... ..+.. ....+++|+.|+|++|.|+++++..|. .+++|+.|+|++|+|.+
T Consensus 78 L~~L~Ls~n~l~--------------~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 78 LTYLNLSTNQLQ--------------SLPNG---VFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCEEECCSSCCC--------------CCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSC
T ss_pred cCEEECCCCcCC--------------ccCHh---HhcCccCCCEEEcCCCcCcccCHhHhc--cCCcCCEEECCCCccce
Confidence 888877654321 11111 013477899999999999988777776 78999999999999887
Q ss_pred cchHHHHHHhcCCCCcceeEee
Q 002880 318 NSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 318 l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++. ..+.++++|+.|+++
T Consensus 139 ~~~----~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 139 VPD----GVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCT----TTTTTCTTCCEEECC
T ss_pred eCH----HHhccCCCccEEEec
Confidence 553 246788889988887
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.12 E-value=1.2e-10 Score=136.58 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=19.7
Q ss_pred cCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccc
Q 002880 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220 (871)
Q Consensus 179 ~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~ 220 (871)
.+++|+.|+|++|+|++++.++..++++++|+.|+|++|.+.
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 344444444444444444444444444444444444444443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.12 E-value=9.9e-11 Score=126.29 Aligned_cols=141 Identities=25% Similarity=0.288 Sum_probs=113.9
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|++++|+|.+.. -...+++|+.|+|++|+|+++.. +.+|++|+.|+|++|.+.+.. . ..
T Consensus 46 ~~L~~L~l~~~~i~~~~-----~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~-----~--l~ 109 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLS-----S--LK 109 (291)
T ss_dssp HTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGG-----G--GT
T ss_pred CcccEEEccCCCcccCh-----hHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcCCCCh-----h--hc
Confidence 45899999999998642 25678999999999999998643 899999999999999996643 1 46
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
.+++|+.++++.+..... .....+++|+.|+|++|.|+++ ..+. .+++|+.|+|++|
T Consensus 110 ~l~~L~~L~L~~n~i~~~-------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~L~~N 166 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI-------------------NGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDN 166 (291)
T ss_dssp TCTTCCEEECTTSCCCCC-------------------GGGGGCTTCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSS
T ss_pred cCCCCCEEECCCCcCCCC-------------------hhhcCCCCCCEEEccCCcCCcc--hhhc--cCCCCCEEEccCC
Confidence 788999888776542211 1123478999999999999998 3455 7999999999999
Q ss_pred CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|.+++. +.++++|+.|+++
T Consensus 167 ~l~~~~~------l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 167 QISDIVP------LAGLTKLQNLYLS 186 (291)
T ss_dssp CCCCCGG------GTTCTTCCEEECC
T ss_pred ccccchh------hcCCCccCEEECC
Confidence 9998542 7899999999998
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=2.7e-11 Score=116.72 Aligned_cols=132 Identities=22% Similarity=0.261 Sum_probs=100.8
Q ss_pred cCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccc
Q 002880 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG 258 (871)
Q Consensus 179 ~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~ 258 (871)
..++|+.|+|++|.++. +.++..+..+++|+.|+|++|.+.+.. .
T Consensus 15 ~~~~l~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~------------------------ 59 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSIA----------N------------------------ 59 (149)
T ss_dssp CGGGCSEEECTTCBCBT-TBCCSCCTTCTTCCEEECTTSCCCCCT----------T------------------------
T ss_pred CCccCeEEEccCCcCCh-hHHHHHHhhcCCCcEEECcCCCCCCch----------h------------------------
Confidence 45789999999999982 124556789999999999999884431 1
Q ss_pred cccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEe
Q 002880 259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV 338 (871)
Q Consensus 259 ~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L 338 (871)
...+++|+.|+|++|.|++.+|..+. .+++|+.|+|++|++.+++ .+..++++++|+.|++
T Consensus 60 --------------~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 60 --------------LPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDL 120 (149)
T ss_dssp --------------CCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEEC
T ss_pred --------------hhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeC
Confidence 12377899999999999997677666 6999999999999998743 2357899999999999
Q ss_pred eCCCCCCc---hhhHHhhhCCCcccccCcc
Q 002880 339 DIPGPLGE---SAIEILESLPTLCTLNGVT 365 (871)
Q Consensus 339 ~iP~~l~~---~~~~Il~~L~~L~~Ln~~~ 365 (871)
+-. .+.. ....++..+++|+.|+..+
T Consensus 121 ~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 822 1111 1225778899998887653
No 97
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.11 E-value=6.5e-11 Score=137.79 Aligned_cols=84 Identities=19% Similarity=0.085 Sum_probs=58.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|++... .....+++|+.|+|++|+|+.+ .+..+++|++|+.|+|++|.+.+.. +....
T Consensus 26 ~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSRINTI--EGDAFYSLGSLEHLDLSDNHLSSLS-----SSWFG 95 (549)
T ss_dssp TTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCCSCC-----HHHHT
T ss_pred CCccEEECcCCccCccCh---hhhhcCCcccEEECCCCCcCcc--ChhhccccccCCEEECCCCccCccC-----HHHhc
Confidence 457888888888875321 2235678888888888888764 2356788888888888888886544 33345
Q ss_pred cCCCcccccccccc
Q 002880 234 GCPKLEIYNSNFTI 247 (871)
Q Consensus 234 ~lp~Le~lnl~~t~ 247 (871)
.+++|+.++++.+.
T Consensus 96 ~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 96 PLSSLKYLNLMGNP 109 (549)
T ss_dssp TCTTCCEEECTTCC
T ss_pred cCCCCcEEECCCCc
Confidence 77888888776553
No 98
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=1.3e-10 Score=115.39 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=86.0
Q ss_pred eEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCC
Q 002880 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (871)
Q Consensus 157 ~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp 236 (871)
+.+++++++++... ....++|+.|+|++|+|+.+. +..++++++|+.|+|++|.+.+..+ ..
T Consensus 10 ~~l~~~~~~l~~~p------~~~~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-----~~----- 71 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP------TGIPSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQSLPD-----GV----- 71 (177)
T ss_dssp TEEECCSSCCSSCC------TTCCTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCT-----TT-----
T ss_pred CEEEecCCCCccCC------CCCCCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcceEeCh-----hH-----
Confidence 45777777776532 123478999999999998642 3457889999999999998854431 00
Q ss_pred CccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCC
Q 002880 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 237 ~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
...+++|+.|+|++|.|+++++..+. .+++|+.|+|++|+|.
T Consensus 72 ------------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 72 ------------------------------------FDKLTKLTILYLHENKLQSLPNGVFD--KLTQLKELALDTNQLK 113 (177)
T ss_dssp ------------------------------------TTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCS
T ss_pred ------------------------------------ccCCCccCEEECCCCCccccCHHHhh--CCcccCEEECcCCcce
Confidence 01266777888888888877666666 6778888888888887
Q ss_pred CcchHHHHHHhcCCCCcceeEee
Q 002880 317 QNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 317 ~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+++.. .+.++++|+.|+++
T Consensus 114 ~~~~~----~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 114 SVPDG----IFDRLTSLQKIWLH 132 (177)
T ss_dssp CCCTT----TTTTCTTCCEEECC
T ss_pred EeCHH----HhcCCcccCEEEec
Confidence 65532 45667777777776
No 99
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=5e-11 Score=140.61 Aligned_cols=150 Identities=20% Similarity=0.153 Sum_probs=107.7
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccc---ccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE---WAL 254 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~---~~l 254 (871)
..+++|+.|+|++|+++..+.++..+..+++|+.|+|++|.+.+.. .....+++|+.++++.+...+. ..+
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS------ANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC------CCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch------hhccCCCCCCeeECCCCccCCccChhhh
Confidence 3578888888888888866444567888899999999999886533 1234677888887765543322 334
Q ss_pred cccccccCCCCCCCccc-----cCCcCCccceeecCCccccc-cccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhc
Q 002880 255 GFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRCIHN-LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328 (871)
Q Consensus 255 ~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~I~~-l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~ 328 (871)
..+..+..+++.++-.. ....+++|+.|+|++|.+++ .+|..+. .+++|+.|+|++|++.++. +..++
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~----~~~~~ 494 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA--NTTNLTFLDLSKCQLEQIS----WGVFD 494 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTSCCCEEC----TTTTT
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc--cCCCCCEEECCCCcCCccC----hhhhc
Confidence 45555555555544322 23457789999999999988 4677777 7899999999999998744 34678
Q ss_pred CCCCcceeEee
Q 002880 329 GFPCLQSLGVD 339 (871)
Q Consensus 329 ~lp~L~~L~L~ 339 (871)
++++|++|+++
T Consensus 495 ~l~~L~~L~Ls 505 (606)
T 3vq2_A 495 TLHRLQLLNMS 505 (606)
T ss_dssp TCTTCCEEECC
T ss_pred ccccCCEEECC
Confidence 88999999988
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=9.1e-11 Score=118.64 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=92.1
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+|++|.|+... +......+++|+.|+|++|+|+.+ .+..+.++++|+.|+|++|.|.+..+..
T Consensus 30 ~l~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------- 97 (192)
T 1w8a_A 30 HTTELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLTGI--EPNAFEGASHIQELQLGENKIKEISNKM-------- 97 (192)
T ss_dssp TCSEEECCSCCCCSBC--CSCSGGGCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSCCCCEECSSS--------
T ss_pred CCCEEECCCCcCCccC--CccccccCCCCCEEECCCCCCCCc--CHhHcCCcccCCEEECCCCcCCccCHHH--------
Confidence 5889999999997632 222456889999999999999975 3567999999999999999996654211
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~ 314 (871)
...+++|+.|+|++|.|++++|..|. .+++|++|+|++|+
T Consensus 98 --------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 98 --------------------------------------FLGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASNP 137 (192)
T ss_dssp --------------------------------------STTCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECTTCC
T ss_pred --------------------------------------hcCCCCCCEEECCCCcCCeeCHHHhh--cCCCCCEEEeCCCC
Confidence 11277899999999999999998888 89999999999999
Q ss_pred CCC
Q 002880 315 LEQ 317 (871)
Q Consensus 315 L~~ 317 (871)
+.+
T Consensus 138 l~c 140 (192)
T 1w8a_A 138 FNC 140 (192)
T ss_dssp BCC
T ss_pred ccC
Confidence 986
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=1e-10 Score=139.12 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=108.7
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~ 257 (871)
..+++|+.|+|++|.|.+++ .+..|++|+.|+|++|.|.+..+ +..|++|+.|+++.+...+.-.+..|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~l~~l~~l 108 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-------LTNLKNLGWLFLDENKIKDLSSLKDL 108 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCCTTSTTC
T ss_pred hcCCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCCCCCChh-------hccCCCCCEEECcCCCCCCChhhccC
Confidence 46789999999999999864 58999999999999999976542 56899999999887754433345556
Q ss_pred ccccCCCCCCCcccc---CCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcc
Q 002880 258 GEVYDKDNPSSLCLR---DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334 (871)
Q Consensus 258 ~~~~~~~~~~~i~~~---~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~ 334 (871)
.++..+++.++.... ...+++|+.|+|++|.|+++ ..+. .|++|+.|+|++|.|.+++. +.+|++|+
T Consensus 109 ~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~ 178 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISDIVP------LAGLTKLQ 178 (605)
T ss_dssp TTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGG--SCTTCSEEECCSSCCCCCGG------GTTCTTCC
T ss_pred CCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhc--ccCCCCEEECcCCcCCCchh------hccCCCCC
Confidence 666666665544332 34567888999999998887 3455 78899999999999887441 78889999
Q ss_pred eeEee
Q 002880 335 SLGVD 339 (871)
Q Consensus 335 ~L~L~ 339 (871)
.|+|+
T Consensus 179 ~L~Ls 183 (605)
T 1m9s_A 179 NLYLS 183 (605)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99988
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.09 E-value=2.2e-11 Score=126.80 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=87.2
Q ss_pred CCceeEEeecccc-ccccccccccccccCCCCcEeeccC-CccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhH
Q 002880 153 DGTVKWLELEDAD-IGDDMLLSLNLSSKFPDLQALSLCG-NKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230 (871)
Q Consensus 153 ~~~l~~L~L~~~~-i~d~~l~~~~l~~~~p~L~~L~Ls~-N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~ 230 (871)
...++.|+|++|. |+... ......+++|+.|+|++ |+|+.++ +..+.++++|+.|+|++|.+.+..+
T Consensus 54 l~~L~~L~l~~n~~l~~i~---~~~f~~l~~L~~L~l~~~n~l~~i~--~~~f~~l~~L~~L~l~~n~l~~lp~------ 122 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLE---SHSFYNLSKVTHIEIRNTRNLTYID--PDALKELPLLKFLGIFNTGLKMFPD------ 122 (239)
T ss_dssp CTTCCEEEEECCSSCCEEC---TTTEESCTTCCEEEEEEETTCCEEC--TTSEECCTTCCEEEEEEECCCSCCC------
T ss_pred CCCCcEEeCCCCCCcceeC---HhHcCCCcCCcEEECCCCCCeeEcC--HHHhCCCCCCCEEeCCCCCCccccc------
Confidence 3567888888886 76522 22345678888888887 8887653 2457788888888888888865431
Q ss_pred HhhcCCCcc---ccccccccccccccccccccccCCCCCCCccccCCcCCccc-eeecCCccccccccccCCCCCCCCcc
Q 002880 231 ILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT-SLDLSNRCIHNLVNKAFSPAEMPSLS 306 (871)
Q Consensus 231 i~~~lp~Le---~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~-~LdLS~N~I~~l~p~~~~~~~l~~L~ 306 (871)
...+++|+ .++++.+..... .+.. ....+++|+ .|+|++|.|+.+.+..|. . ++|+
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~-------------i~~~---~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~-~~L~ 182 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTS-------------IPVN---AFQGLCNETLTLKLYNNGFTSVQGYAFN--G-TKLD 182 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCE-------------ECTT---TTTTTBSSEEEEECCSCCCCEECTTTTT--T-CEEE
T ss_pred -cccccccccccEEECCCCcchhh-------------cCcc---cccchhcceeEEEcCCCCCcccCHhhcC--C-CCCC
Confidence 23555555 665543311100 0000 012255566 666666666655444443 2 5666
Q ss_pred eEeccCCC-CCCcchHHHHHHhcCC-CCcceeEee
Q 002880 307 HLNIRGNP-LEQNSVRELLEVLKGF-PCLQSLGVD 339 (871)
Q Consensus 307 ~LnLs~N~-L~~l~~~~i~~~l~~l-p~L~~L~L~ 339 (871)
.|+|++|+ |.+++.. .+.++ ++|+.|+++
T Consensus 183 ~L~L~~n~~l~~i~~~----~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKD----AFGGVYSGPSLLDVS 213 (239)
T ss_dssp EEECTTCTTCCEECTT----TTTTCSBCCSEEECT
T ss_pred EEEcCCCCCcccCCHH----HhhccccCCcEEECC
Confidence 66666663 5554322 34555 666666665
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=1.3e-10 Score=129.06 Aligned_cols=123 Identities=22% Similarity=0.251 Sum_probs=97.5
Q ss_pred eEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHh-cCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT-KLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 157 ~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~-~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
+.+++++++|+... . ...++|+.|+|++|+|+.+. +..+. ++++|+.|+|++|.|.+..++.|
T Consensus 21 ~~l~c~~~~l~~iP---~---~~~~~l~~L~Ls~N~l~~l~--~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------- 84 (361)
T 2xot_A 21 NILSCSKQQLPNVP---Q---SLPSYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISSEAF-------- 84 (361)
T ss_dssp TEEECCSSCCSSCC---S---SCCTTCSEEECCSSCCCEEC--TTSSSSCCTTCCEEECCSSCCCEECTTTT--------
T ss_pred CEEEeCCCCcCccC---c---cCCCCCCEEECCCCCCCccC--hhhhhhcccccCEEECCCCcCCccChhhc--------
Confidence 46888888887622 1 12356899999999998753 24465 89999999999999965442111
Q ss_pred CCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
..+++|+.|+|++|.|+++.+..|. .+++|+.|+|++|+|
T Consensus 85 --------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 85 --------------------------------------VPVPNLRYLDLSSNHLHTLDEFLFS--DLQALEVLLLYNNHI 124 (361)
T ss_dssp --------------------------------------TTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCC
T ss_pred --------------------------------------cCCCCCCEEECCCCcCCcCCHHHhC--CCcCCCEEECCCCcc
Confidence 1277899999999999999888888 899999999999999
Q ss_pred CCcchHHHHHHhcCCCCcceeEee
Q 002880 316 EQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 316 ~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.+++ +..+.++++|+.|+|+
T Consensus 125 ~~~~----~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 125 VVVD----RNAFEDMAQLQKLYLS 144 (361)
T ss_dssp CEEC----TTTTTTCTTCCEEECC
T ss_pred cEEC----HHHhCCcccCCEEECC
Confidence 9854 3468899999999998
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=1.9e-10 Score=142.01 Aligned_cols=225 Identities=13% Similarity=0.120 Sum_probs=127.3
Q ss_pred HHhhChhHHHHHHhhhccccCCCcchhh--hhhhccccccCCCCcchhhHHHhhhcccccC---CCCceeEEeecccccc
Q 002880 93 QLQEVPGLAQRMASLMCVDTDLDTDIEE--VDAVKGVLHENGTKSNVEDILESEIHNATEK---GDGTVKWLELEDADIG 167 (871)
Q Consensus 93 ql~~~p~L~~rl~~l~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~L~L~~~~i~ 167 (871)
.|..+|.-..+|.+|..++++.|. +.. ++. ....... ..+...+ -.+- +...++.|+|++|++.
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~------~~~~~s~--n~~~g~i--P~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSP-FTYDNIAV------DWEDANS--DYAKQYE--NEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSS------SCSCTTS--HHHHHHT--TSCCCGGGCTTCCEEEEESCTTC
T ss_pred cccchhHHHhcCCCCCEEECcCCc-CCCCcccc------ccccccc--ccccccC--ChhhhhccCCCCCEEECcCCCCC
Confidence 445588888889999999988772 332 000 0000000 0000000 0111 2356899999999876
Q ss_pred ccccccccccccCCCCcEeeccCCc-cccHHHHHHHHhcCC-------CCCeeeCCCCcccccccccchh-HHhhcCCCc
Q 002880 168 DDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLK-------NLRALWLNNNPVLKKCDHCMED-AILQGCPKL 238 (871)
Q Consensus 168 d~~l~~~~l~~~~p~L~~L~Ls~N~-L~~~~~i~~~l~~L~-------~Lk~L~Ls~N~l~~~~~~~~~~-~i~~~lp~L 238 (871)
... + ....++++|+.|+|++|+ |+. ..+|..+++|+ +|+.|+|++|.+.... . .....+++|
T Consensus 505 ~~i--P-~~l~~L~~L~~L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip-----~~~~l~~L~~L 575 (876)
T 4ecn_A 505 TQL--P-DFLYDLPELQSLNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP-----ASASLQKMVKL 575 (876)
T ss_dssp CSC--C-GGGGGCSSCCEEECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC-----CHHHHTTCTTC
T ss_pred ccC--h-HHHhCCCCCCEEECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCCcCCccC-----ChhhhhcCCCC
Confidence 522 2 345678999999999998 773 14666666665 9999999999996322 2 134578888
Q ss_pred cccccccccccccccccccccccCCCCCCCc----cccCCcCCc-cceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 239 EIYNSNFTINFGEWALGFCGEVYDKDNPSSL----CLRDRPLQS-VTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 239 e~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i----~~~~~~l~~-L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
+.++++.+.....-.+..+.++..+++.++. +.....+++ |+.|+|++|.|+.+ |..+....+++|+.|+|++|
T Consensus 576 ~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 576 GLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSS
T ss_pred CEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCC
Confidence 8887765532211133444444444443332 222334556 77788888877744 55555223445777777777
Q ss_pred CCCCcchHHHHHHhc--CCCCcceeEee
Q 002880 314 PLEQNSVRELLEVLK--GFPCLQSLGVD 339 (871)
Q Consensus 314 ~L~~l~~~~i~~~l~--~lp~L~~L~L~ 339 (871)
+|.+.. ..++..++ .+++|+.|+|+
T Consensus 655 ~l~g~i-p~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 655 KIGSEG-RNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp CTTTTS-SSCSSCTTTCCCCCEEEEECC
T ss_pred cCCCcc-ccchhhhccccCCCcCEEEcc
Confidence 776521 01111112 23467777776
No 105
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.08 E-value=8.7e-11 Score=138.15 Aligned_cols=130 Identities=18% Similarity=0.114 Sum_probs=102.7
Q ss_pred CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccc
Q 002880 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (871)
Q Consensus 181 p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~ 260 (871)
++++.|+|++|+|+.+. +..|.+|++|+.|+|++|.|.+..++ .+.++++|+.|+++.+....
T Consensus 52 ~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~~-----~f~~L~~L~~L~Ls~N~l~~---------- 114 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDG-----AYQSLSHLSTLILTGNPIQS---------- 114 (635)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTT-----TTTTCTTCCEEECTTCCCCE----------
T ss_pred cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcChh-----HhcCCCCCCEEEccCCcCCC----------
Confidence 48999999999999763 35799999999999999999776643 33578899999887553221
Q ss_pred cCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 261 ~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++.. ....+++|+.|+|++|.|+++++..|. .+++|+.|+|++|.|.+++ ++..++++++|+.|+++
T Consensus 115 ----l~~~---~f~~L~~L~~L~Ls~N~l~~l~~~~~~--~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 115 ----LALG---AFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp ----ECGG---GGTTCTTCCEEECTTSCCCCSTTCCCT--TCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECC
T ss_pred ----CCHH---HhcCCCCCCEEECCCCcCCCCChhhhh--cCcccCeeccccCccccCC---Cchhhccchhhhhhccc
Confidence 0111 113488999999999999999878888 8999999999999998643 33467889999999998
No 106
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=6.7e-11 Score=132.54 Aligned_cols=186 Identities=16% Similarity=0.114 Sum_probs=129.5
Q ss_pred CceeEEeecccccccccccccc--ccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHH
Q 002880 154 GTVKWLELEDADIGDDMLLSLN--LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~--l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i 231 (871)
..++.|+|++|.|++.....+. +...+++|+.|+|++|.|++.+ +......|++|+.|+|++|.|+......+...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3588999999999885544432 2345579999999999998532 333445577899999999999765433444444
Q ss_pred hhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccc----cccCCCCCCCCcce
Q 002880 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV----NKAFSPAEMPSLSH 307 (871)
Q Consensus 232 ~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~----p~~~~~~~l~~L~~ 307 (871)
....++|+.++++.+.........++. .....++|+.|+|++|.|+... ...+. .+++|+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------------~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~--~~~~L~~ 215 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLME-------------GLAGNTSVTHLSLLHTGLGDEGLELLAAQLD--RNRQLQE 215 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHH-------------HHHTCSSCCEEECTTSSCHHHHHHHHHHHGG--GCSCCCE
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHH-------------HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh--cCCCcCe
Confidence 445788998888776432111111111 1123678999999999998643 33444 6789999
Q ss_pred EeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCC
Q 002880 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLP 356 (871)
Q Consensus 308 LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~ 356 (871)
|+|++|.|.+.....+...+..+++|++|+|+-. .+++.....++.+.
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~ 263 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLG 263 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHh
Confidence 9999999998777788888999999999999933 35555545555443
No 107
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.08 E-value=1.5e-10 Score=138.49 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=95.4
Q ss_pred CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccc--ccccccccc
Q 002880 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF--GEWALGFCG 258 (871)
Q Consensus 181 p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~--~~~~l~~~~ 258 (871)
++|+.|+|++|+++.+ .+..+..+++|+.|+|++|.+.+.. ......++++|+.++++.+... ...++..|.
T Consensus 381 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 454 (680)
T 1ziw_A 381 SPLHILNLTKNKISKI--ESDAFSWLGHLEVLDLGLNEIGQEL----TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454 (680)
T ss_dssp SCCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCEEEC----CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT
T ss_pred CcCceEECCCCCCCeE--ChhhhhCCCCCCEEeCCCCcCcccc----CcccccCcccccEEecCCCCcceeChhhhhcCc
Confidence 4666666677776654 2356777888888888888875432 2233456777777776655322 122333344
Q ss_pred cccCCCCCCCc-------cccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHH----HHh
Q 002880 259 EVYDKDNPSSL-------CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELL----EVL 327 (871)
Q Consensus 259 ~~~~~~~~~~i-------~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~----~~l 327 (871)
.+..+.+.++. ......+++|+.|+|++|.|+++++..|. .+++|+.|+|++|++.+++...++ ..+
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~ 532 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE--GLEKLEILDLQHNNLARLWKHANPGGPIYFL 532 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCGGGGSTTSTTSCCCTT
T ss_pred ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc--cccccCEEeCCCCCccccchhhccCCcchhh
Confidence 44444333322 12234577888888888888888777777 788888888888888765322222 126
Q ss_pred cCCCCcceeEee
Q 002880 328 KGFPCLQSLGVD 339 (871)
Q Consensus 328 ~~lp~L~~L~L~ 339 (871)
+++++|+.|+++
T Consensus 533 ~~l~~L~~L~L~ 544 (680)
T 1ziw_A 533 KGLSHLHILNLE 544 (680)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEECC
Confidence 778888888887
No 108
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=6.2e-11 Score=146.35 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=55.1
Q ss_pred hChhHHHHHH-------hhhccccCCCcchhhhhhhccccccCCCCcchhhHHHhhhcccccCCCCceeEEeeccccccc
Q 002880 96 EVPGLAQRMA-------SLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGD 168 (871)
Q Consensus 96 ~~p~L~~rl~-------~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d 168 (871)
.+|.-..+|. +|..++++.| .+.++++. +.+ ++...++.|+|++|.|+.
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~--------------~~l---------~~L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPAS--------------ASL---------QKMVKLGLLDCVHNKVRH 587 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCH--------------HHH---------TTCTTCCEEECTTSCCCB
T ss_pred cchHHHHhhhhcccccCCccEEEeeCC-cCCccCCh--------------hhh---------hcCCCCCEEECCCCCccc
Confidence 3777777887 8888888776 22222220 000 112456777777777662
Q ss_pred cccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCC-CCeeeCCCCccc
Q 002880 169 DMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKN-LRALWLNNNPVL 220 (871)
Q Consensus 169 ~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~-Lk~L~Ls~N~l~ 220 (871)
+ + ....+++|+.|+|++|+|+. +|..+.++++ |+.|+|++|.+.
T Consensus 588 --l-p--~~~~L~~L~~L~Ls~N~l~~---lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 588 --L-E--AFGTNVKLTDLKLDYNQIEE---IPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp --C-C--CCCTTSEESEEECCSSCCSC---CCTTSCEECTTCCEEECCSSCCC
T ss_pred --c-h--hhcCCCcceEEECcCCcccc---chHHHhhccccCCEEECcCCCCC
Confidence 1 1 33556677777777777663 3445666666 777777777665
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.06 E-value=1.6e-10 Score=135.53 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=53.8
Q ss_pred CcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 274 ~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..+++|+.|+|++|.|++.+|..+. .+++|+.|+|++|+|.+++ .++..++++++|+.|+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECT
T ss_pred cCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECC
Confidence 4577899999999999998888887 8999999999999999844 667788999999999998
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.06 E-value=1.2e-10 Score=114.48 Aligned_cols=136 Identities=27% Similarity=0.322 Sum_probs=102.7
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~ 257 (871)
...++|+.|+|++|+|+. +.++..+.++++|+.|+|++|.+.+..
T Consensus 21 ~~~~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~~---------------------------------- 65 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISVS---------------------------------- 65 (168)
T ss_dssp SCTTSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCCS----------------------------------
T ss_pred CCcccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCChh----------------------------------
Confidence 345889999999999981 123456789999999999999884321
Q ss_pred ccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeE
Q 002880 258 GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337 (871)
Q Consensus 258 ~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~ 337 (871)
....+++|+.|+|++|.|++.+|..+. .+++|++|+|++|.|.+++. +..+.++++|+.|+
T Consensus 66 --------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 66 --------------NLPKLPKLKKLELSENRIFGGLDMLAE--KLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLD 126 (168)
T ss_dssp --------------SCCCCSSCCEEEEESCCCCSCCCHHHH--HCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEE
T ss_pred --------------hhccCCCCCEEECcCCcCchHHHHHHh--hCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEE
Confidence 112378899999999999997677665 69999999999999998642 14678999999999
Q ss_pred eeCCC--CCCchhhHHhhhCCCcccccCcccc
Q 002880 338 VDIPG--PLGESAIEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 338 L~iP~--~l~~~~~~Il~~L~~L~~Ln~~~vs 367 (871)
++-.. .+..+...++..+++|+.|+.....
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 98221 1111223567788999888877655
No 111
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=135.31 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=125.1
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
...++.|+|++|.++.....+ .....+++|+.|+|++|.++.+. ..+..+++|+.|+|++|.+.+..+ ....
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~----~~~~ 417 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCS-QSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSE----FSVF 417 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEE-HHHHTCSCCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSEEESCTT----SCTT
T ss_pred CCCCCEEeCcCCccCcccccc-ccccccCccCEEECCCCcccccc---ccccccCCCCEEEccCCccccccc----hhhh
Confidence 356888888888887532111 22356788999999999887643 237788889999999988865431 1223
Q ss_pred hcCCCcccccccccccccc--ccccccccccCCCCCCCcc------ccCCcCCccceeecCCccccccccccCCCCCCCC
Q 002880 233 QGCPKLEIYNSNFTINFGE--WALGFCGEVYDKDNPSSLC------LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS 304 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~--~~l~~~~~~~~~~~~~~i~------~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~ 304 (871)
..+++|+.++++.+...+. ..+..+.++..+++.++.. .....+++|+.|+|++|.|+++.|..+. .+++
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~ 495 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSS 495 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTT
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh--cccC
Confidence 5678888888766643322 2334455555555554432 2345688999999999999999898888 8999
Q ss_pred cceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 305 L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+.|+|++|+|.+++. ..+.++++|+.|+++
T Consensus 496 L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 496 LQVLNMASNQLKSVPD----GIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCEEECCSSCCSCCCT----TTTTTCTTCCEEECC
T ss_pred CCEEeCCCCcCCCCCH----HHhhcccCCcEEEec
Confidence 9999999999998653 367889999999998
No 112
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=128.24 Aligned_cols=185 Identities=13% Similarity=0.083 Sum_probs=113.1
Q ss_pred EEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCC
Q 002880 158 WLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237 (871)
Q Consensus 158 ~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~ 237 (871)
..++++++++.... .-.++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.+.+..+ .....+++
T Consensus 35 ~c~~~~~~l~~iP~------~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~ 101 (353)
T 2z80_A 35 ICKGSSGSLNSIPS------GLTEAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINTIEE-----DSFSSLGS 101 (353)
T ss_dssp EEECCSTTCSSCCT------TCCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTT
T ss_pred EeeCCCCCcccccc------cccccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccCccCH-----hhcCCCCC
Confidence 36777777775221 22469999999999999753 2468999999999999999976543 22356889
Q ss_pred ccccccccccccc--cccccccccccCCCCCCCccc------cCCcCCccceeecCCc-cccccccccCCCCCCCCcceE
Q 002880 238 LEIYNSNFTINFG--EWALGFCGEVYDKDNPSSLCL------RDRPLQSVTSLDLSNR-CIHNLVNKAFSPAEMPSLSHL 308 (871)
Q Consensus 238 Le~lnl~~t~~~~--~~~l~~~~~~~~~~~~~~i~~------~~~~l~~L~~LdLS~N-~I~~l~p~~~~~~~l~~L~~L 308 (871)
|+.++++.+.... ...+..+.++..+++.++-.. ....+++|+.|+|++| .+.++.+..|. .+++|+.|
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L 179 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA--GLTFLEEL 179 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc--CCCCCCEE
Confidence 9999887664321 112333344444444333211 1233566777777776 35555555565 66777777
Q ss_pred eccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCCccccc
Q 002880 309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362 (871)
Q Consensus 309 nLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~Ln 362 (871)
+|++|.+.++. +..++++++|++|+++-.. ++.........+++|+.|+
T Consensus 180 ~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 180 EIDASDLQSYE----PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp EEEETTCCEEC----TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEE
T ss_pred ECCCCCcCccC----HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEE
Confidence 77777776532 3356667777777776221 2222223344566666553
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.04 E-value=3.4e-10 Score=120.36 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=108.7
Q ss_pred eeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcC
Q 002880 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235 (871)
Q Consensus 156 l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~l 235 (871)
+..++|+.+++++.. ....+++|+.|+|++|+|++++ .+..+++|+.|+|++|.+.+.. . ...+
T Consensus 21 l~~l~l~~~~i~~~~-----~~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~-----~--l~~l 84 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-----SQKELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLS-----P--LKDL 84 (263)
T ss_dssp HHHHHHTCSCTTSEE-----CHHHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCG-----G--GTTC
T ss_pred HHHHHhcCCCccccc-----chhhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCCCccCCCh-----h--hccC
Confidence 455667777777633 2356899999999999999864 6899999999999999997654 2 5688
Q ss_pred CCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCC
Q 002880 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315 (871)
Q Consensus 236 p~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L 315 (871)
++|+.++++.+...+ .+ .... .+|+.|+|++|.|+++ + .+. .+++|+.|+|++|+|
T Consensus 85 ~~L~~L~L~~N~l~~--------------l~-----~~~~-~~L~~L~L~~N~l~~~-~-~l~--~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN--------------LN-----GIPS-ACLSRLFLDNNELRDT-D-SLI--HLKNLEILSIRNNKL 140 (263)
T ss_dssp SSCCEEECCSSCCSC--------------CT-----TCCC-SSCCEEECCSSCCSBS-G-GGT--TCTTCCEEECTTSCC
T ss_pred CCCCEEECCCCccCC--------------cC-----cccc-CcccEEEccCCccCCC-h-hhc--CcccccEEECCCCcC
Confidence 999999887653221 11 0111 7899999999999997 3 355 799999999999999
Q ss_pred CCcchHHHHHHhcCCCCcceeEee
Q 002880 316 EQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 316 ~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++++ .++++++|+.|+++
T Consensus 141 ~~~~------~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 141 KSIV------MLGFLSKLEVLDLH 158 (263)
T ss_dssp CBCG------GGGGCTTCCEEECT
T ss_pred CCCh------HHccCCCCCEEECC
Confidence 9853 57899999999999
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.03 E-value=2.5e-10 Score=115.62 Aligned_cols=146 Identities=19% Similarity=0.256 Sum_probs=106.8
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~ 257 (871)
..+++|+.|+|++|.|++++ .+..+++|+.|+|++|.+.... ....+++|+.++++.+...+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~l~~n~~~~~~-------~l~~l~~L~~L~l~~n~l~~~------ 103 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNIHATNYN-------PISGLSNLERLRIMGKDVTSD------ 103 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT----TGGGCTTCSEEEEESCCCSCCG-------GGTTCTTCCEEEEECTTCBGG------
T ss_pred hhcCCccEEeccCCCccChH----HHhcCCCCCEEEccCCCCCcch-------hhhcCCCCCEEEeECCccCcc------
Confidence 45789999999999999754 5899999999999999775432 235688888888765432211
Q ss_pred ccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC-CCCcchHHHHHHhcCCCCccee
Q 002880 258 GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP-LEQNSVRELLEVLKGFPCLQSL 336 (871)
Q Consensus 258 ~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~-L~~l~~~~i~~~l~~lp~L~~L 336 (871)
.+. ....+++|+.|+|++|.|++..+..+. .+++|+.|+|++|+ +..++ .+.++++|+.|
T Consensus 104 -------~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L 164 (197)
T 4ezg_A 104 -------KIP----NLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDIM------PLKTLPELKSL 164 (197)
T ss_dssp -------GSC----CCTTCTTCCEEECCSSBCBGGGHHHHT--TCSSCCEEECCSCTBCCCCG------GGGGCSSCCEE
T ss_pred -------cCh----hhcCCCCCCEEEecCCccCcHhHHHHh--hCCCCCEEEccCCCCccccH------hhcCCCCCCEE
Confidence 011 123478999999999999997777777 89999999999998 77643 57899999999
Q ss_pred EeeCCCCCCchhhHHhhhCCCccccc
Q 002880 337 GVDIPGPLGESAIEILESLPTLCTLN 362 (871)
Q Consensus 337 ~L~iP~~l~~~~~~Il~~L~~L~~Ln 362 (871)
+++-.. +.+.. .+..+++|+.|+
T Consensus 165 ~l~~n~-i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 165 NIQFDG-VHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp ECTTBC-CCCCT--TGGGCSSCCEEE
T ss_pred ECCCCC-CcChH--HhccCCCCCEEE
Confidence 998221 11111 345666666553
No 115
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.03 E-value=2.1e-10 Score=137.19 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=34.2
Q ss_pred CceeEEeeccccccccccccccccccCCC-CcEeeccCCccccHHHHHHHHhcCC--CCCeeeCCCCccccc
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPD-LQALSLCGNKLETVEIIVQEVTKLK--NLRALWLNNNPVLKK 222 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~-L~~L~Ls~N~L~~~~~i~~~l~~L~--~Lk~L~Ls~N~l~~~ 222 (871)
..++.|+|++|.|+. .+. ....+++ |+.|+|++|+|+.+ |..+..++ +|+.|+|++|.+.+.
T Consensus 353 ~~L~~L~L~~N~l~~---lp~-~l~~l~~~L~~L~Ls~N~l~~l---p~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 353 IKLASLNLAYNQITE---IPA-NFCGFTEQVENLSFAHNKLKYI---PNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp EEESEEECCSSEEEE---CCT-TSEEECTTCCEEECCSSCCSSC---CSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CCCCEEECCCCcccc---ccH-hhhhhcccCcEEEccCCcCccc---chhhhhcccCccCEEECcCCcCCCc
Confidence 357777777777662 111 1344555 66666666666632 33344333 566666666666543
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.03 E-value=4.1e-10 Score=134.32 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=27.5
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccc
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~ 220 (871)
...++.|+|++|.|+... ..+++|+.|+|++|+|++++. .+++|+.|+|++|.++
T Consensus 80 l~~L~~L~Ls~N~l~~lp-------~~l~~L~~L~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLP-------VLPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp CTTCCEEEECSCCCSCCC-------CCCTTCCEEEECSCCCCCCCC------CCTTCCEEECCSSCCS
T ss_pred CCCCCEEEcCCCcCCcCC-------CCCCCCCEEECcCCcCCCCCC------CCCCcCEEECCCCCCC
Confidence 345666666666665311 134555555555555554321 3344444444444443
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=3.8e-10 Score=114.40 Aligned_cols=110 Identities=25% Similarity=0.292 Sum_probs=91.1
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|+... .....+++|+.|+|++|+|+.+. +..|.+|++|+.|+|++|.|.+..++.|
T Consensus 31 ~~l~~L~L~~n~i~~ip----~~~~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f------ 98 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP----KELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSYNRLRCIPPRTF------ 98 (193)
T ss_dssp TTCCEEECCSSCCCSCC----GGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTT------
T ss_pred CCCCEEECCCCcCchhH----HHhhcccCCCEEECCCCcCCEeC--HhHccCCCCCCEEECCCCccCEeCHHHh------
Confidence 35899999999998532 34578899999999999999753 3679999999999999999966542111
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
..+++|+.|+|++|.|+++++..|. .+++|+.|+|++|
T Consensus 99 ----------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N 136 (193)
T 2wfh_A 99 ----------------------------------------DGLKSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGAN 136 (193)
T ss_dssp ----------------------------------------TTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSS
T ss_pred ----------------------------------------CCCCCCCEEECCCCCCCeeChhhhh--cCccccEEEeCCC
Confidence 1277899999999999999777887 8999999999999
Q ss_pred CCCC
Q 002880 314 PLEQ 317 (871)
Q Consensus 314 ~L~~ 317 (871)
++..
T Consensus 137 ~~~C 140 (193)
T 2wfh_A 137 PLYC 140 (193)
T ss_dssp CEEC
T ss_pred Ceec
Confidence 9965
No 118
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=5.1e-10 Score=111.04 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=83.2
Q ss_pred eEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCC
Q 002880 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (871)
Q Consensus 157 ~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp 236 (871)
+.+++++++|+... ..+ .++|+.|+|++|+|+.+. +..+.++++|+.|+|++|.|.+..++.|
T Consensus 12 ~~l~~s~n~l~~ip---~~~---~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~~~f--------- 74 (170)
T 3g39_A 12 TTVDCSGKSLASVP---TGI---PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLPAGVF--------- 74 (170)
T ss_dssp TEEECTTSCCSSCC---SCC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTTTT---------
T ss_pred CEEEeCCCCcCccC---ccC---CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcCccChhhc---------
Confidence 46888898887632 122 478999999999998752 4678899999999999999865441111
Q ss_pred CccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCC
Q 002880 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 237 ~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
..+++|+.|+|++|.|+++++..|. .+++|+.|+|++|++.
T Consensus 75 -------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 75 -------------------------------------DKLTQLTQLSLNDNQLKSIPRGAFD--NLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCBC
T ss_pred -------------------------------------cCCCCCCEEECCCCccCEeCHHHhc--CCCCCCEEEeCCCCCC
Confidence 1377899999999999999777787 8999999999999998
Q ss_pred Cc
Q 002880 317 QN 318 (871)
Q Consensus 317 ~l 318 (871)
..
T Consensus 116 c~ 117 (170)
T 3g39_A 116 CA 117 (170)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 119
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.00 E-value=5.3e-10 Score=137.86 Aligned_cols=175 Identities=21% Similarity=0.260 Sum_probs=100.4
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|.+.... ......+++|+.|+|++|++++.. .+..+++|++|+.|+|++|.+.+..+..+.....
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~- 173 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG- 173 (844)
T ss_dssp SSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH-
T ss_pred cccCEeeCcCCCCCccccc-CccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccC-
Confidence 4577777777777652211 123456788888888888887542 1245788888888888888887655444433211
Q ss_pred cCCCcccccccccccccc--cccccccc------ccCCCCCCC---------ccc-------------------------
Q 002880 234 GCPKLEIYNSNFTINFGE--WALGFCGE------VYDKDNPSS---------LCL------------------------- 271 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~--~~l~~~~~------~~~~~~~~~---------i~~------------------------- 271 (871)
++|+.++++.+...+. ..+..|.+ +..+++.++ +..
T Consensus 174 --~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 174 --KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp --CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred --CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 3333333322211110 00111111 111111111 000
Q ss_pred -------c--CCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 272 -------R--DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 272 -------~--~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
. ....++|+.|+|++|.+.++.+..|. .+++|+.|+|++|.+.++. +..+.++++|++|+|+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIA----DEAFYGLDNLQVLNLS 322 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEEC----TTTTTTCSSCCEEEEE
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCC----hHHhcCCCCCCEEECC
Confidence 0 00125788888888888888777777 7888888888888887743 2356778888888887
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.00 E-value=1.4e-10 Score=138.30 Aligned_cols=50 Identities=24% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+++|+.|+||+|.|+++ | . .+++|+.|+|++|+|.+++. .+++|+.|+|+
T Consensus 220 ~~~L~~L~Ls~N~L~~l-p---~--~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls 269 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSL-P---V--LPSELKELMVSGNRLTSLPM--------LPSGLLSLSVY 269 (622)
T ss_dssp CTTCCEEECCSSCCSCC-C---C--CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECC
T ss_pred CCCCCEEEccCCccCcC-C---C--CCCcCcEEECCCCCCCcCCc--------ccccCcEEeCC
Confidence 47899999999999986 3 2 67899999999999998663 67899999998
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=6.3e-12 Score=127.51 Aligned_cols=157 Identities=22% Similarity=0.271 Sum_probs=109.0
Q ss_pred ceeEEeecccccccc--cccccc-ccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHH
Q 002880 155 TVKWLELEDADIGDD--MLLSLN-LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~--~l~~~~-l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i 231 (871)
.+..++|+++.+... .+..+. ....+++|+.|+|++|+|+.+ + .+.++++|+.|+|++|.+.... . .
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l---~-~~~~l~~L~~L~l~~n~l~~l~-----~-~ 88 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---S-SLSGMENLRILSLGRNLIKKIE-----N-L 88 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC---C-CHHHHTTCCEEEEEEEEECSCS-----S-H
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc---c-ccccCCCCCEEECCCCCccccc-----c-h
Confidence 455666666666542 222221 346789999999999999874 3 7888999999999999885322 0 0
Q ss_pred hhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEecc
Q 002880 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (871)
Q Consensus 232 ~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs 311 (871)
. ..+++|+.|+|++|.|+++ | .+. .+++|+.|+|+
T Consensus 89 ~-----------------------------------------~~~~~L~~L~L~~N~l~~l-~-~~~--~l~~L~~L~l~ 123 (198)
T 1ds9_A 89 D-----------------------------------------AVADTLEELWISYNQIASL-S-GIE--KLVNLRVLYMS 123 (198)
T ss_dssp H-----------------------------------------HHHHHCSEEEEEEEECCCH-H-HHH--HHHHSSEEEES
T ss_pred h-----------------------------------------hcCCcCCEEECcCCcCCcC-C-ccc--cCCCCCEEECC
Confidence 0 1145688899999998886 3 344 68889999999
Q ss_pred CCCCCCcchHHHHHHhcCCCCcceeEeeC-------CCC--CCchhhHHhhhCCCcccccCcccchh
Q 002880 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDI-------PGP--LGESAIEILESLPTLCTLNGVTASKI 369 (871)
Q Consensus 312 ~N~L~~l~~~~i~~~l~~lp~L~~L~L~i-------P~~--l~~~~~~Il~~L~~L~~Ln~~~vs~~ 369 (871)
+|+|.+++ .+ ..+.++++|++|+++- |.. ...+...++..+++|+.|++..+++.
T Consensus 124 ~N~i~~~~--~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~ 187 (198)
T 1ds9_A 124 NNKITNWG--EI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVD 187 (198)
T ss_dssp EEECCCHH--HH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTT
T ss_pred CCcCCchh--HH-HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHH
Confidence 99988743 21 4678889999999881 110 01223456889999999999988843
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=7.6e-10 Score=109.81 Aligned_cols=111 Identities=22% Similarity=0.319 Sum_probs=89.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|+.. +......+++|+.|+|++|+|+.+. +..+..+++|+.|+|++|.+++..+..
T Consensus 28 ~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~------- 95 (177)
T 2o6r_A 28 SSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYLHENKLQSLPNGV------- 95 (177)
T ss_dssp TTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTT-------
T ss_pred CCCcEEEeCCCcccEe---CHHHhcCcccccEEECCCCcceEeC--hhHccCCCccCEEECCCCCccccCHHH-------
Confidence 4689999999999852 2233467899999999999999653 345789999999999999996543100
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN 313 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N 313 (871)
...+++|+.|+|++|.|+++++..+. .+++|++|+|++|
T Consensus 96 ---------------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N 134 (177)
T 2o6r_A 96 ---------------------------------------FDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTN 134 (177)
T ss_dssp ---------------------------------------TTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSS
T ss_pred ---------------------------------------hhCCcccCEEECcCCcceEeCHHHhc--CCcccCEEEecCC
Confidence 11277899999999999998777777 7999999999999
Q ss_pred CCCC
Q 002880 314 PLEQ 317 (871)
Q Consensus 314 ~L~~ 317 (871)
++.+
T Consensus 135 ~~~~ 138 (177)
T 2o6r_A 135 PWDC 138 (177)
T ss_dssp CBCC
T ss_pred Ceec
Confidence 9987
No 123
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=8.5e-10 Score=110.03 Aligned_cols=106 Identities=22% Similarity=0.311 Sum_probs=79.3
Q ss_pred eEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCC
Q 002880 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236 (871)
Q Consensus 157 ~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp 236 (871)
+.+++++++|+... ..+ .++|+.|+|++|+|+.+ .+..+.++++|+.|+|++|.|.+..++.
T Consensus 15 ~~l~~~~n~l~~iP---~~~---~~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~i~~~~---------- 76 (174)
T 2r9u_A 15 TLVNCQNIRLASVP---AGI---PTDKQRLWLNNNQITKL--EPGVFDHLVNLQQLYFNSNKLTAIPTGV---------- 76 (174)
T ss_dssp SEEECCSSCCSSCC---SCC---CTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred cEEEeCCCCCCccC---CCc---CCCCcEEEeCCCCcccc--CHHHhcCCcCCCEEECCCCCCCccChhH----------
Confidence 46788888886522 112 37889999999998865 2466888999999999999885543100
Q ss_pred CccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCC
Q 002880 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 237 ~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
...+++|+.|+|++|.|+++++..|. .+++|+.|+|++|++.
T Consensus 77 ------------------------------------~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 77 ------------------------------------FDKLTQLTQLDLNDNHLKSIPRGAFD--NLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ------------------------------------TTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCBC
T ss_pred ------------------------------------hCCcchhhEEECCCCccceeCHHHhc--cccCCCEEEeCCCCcc
Confidence 01267789999999999988777677 7899999999999988
Q ss_pred Cc
Q 002880 317 QN 318 (871)
Q Consensus 317 ~l 318 (871)
..
T Consensus 119 c~ 120 (174)
T 2r9u_A 119 CE 120 (174)
T ss_dssp TT
T ss_pred cc
Confidence 63
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.91 E-value=3.2e-09 Score=121.86 Aligned_cols=134 Identities=20% Similarity=0.137 Sum_probs=72.9
Q ss_pred CCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccc
Q 002880 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV 260 (871)
Q Consensus 181 p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~ 260 (871)
++|+.|+|++|+|+++ + .++++++|+.|+|++|.+.+.. ...++|+.++++.+...+.-++..+..+
T Consensus 131 ~~L~~L~L~~n~l~~l---p-~~~~l~~L~~L~l~~N~l~~lp---------~~~~~L~~L~L~~n~l~~l~~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKL---P-ELQNSSFLKIIDVDNNSLKKLP---------DLPPSLEFIAAGNNQLEELPELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCSSC---C-CCTTCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred CCCCEEECcCCCCCCC---c-ccCCCCCCCEEECCCCcCcccC---------CCcccccEEECcCCcCCcCccccCCCCC
Confidence 5777777777777753 2 3777777777777777775532 1233555555444322211123333333
Q ss_pred cCCCCCCCccccC-CcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 261 YDKDNPSSLCLRD-RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 261 ~~~~~~~~i~~~~-~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..+++.++...+. ....+|+.|+|++|.++.+ |. +. .+++|+.|+|++|++.+++. .+++|+.|+++
T Consensus 198 ~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~l-p~-~~--~l~~L~~L~l~~N~l~~l~~--------~~~~L~~L~l~ 265 (454)
T 1jl5_A 198 TAIYADNNSLKKLPDLPLSLESIVAGNNILEEL-PE-LQ--NLPFLTTIYADNNLLKTLPD--------LPPSLEALNVR 265 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSSC-CC-CT--TCTTCCEEECCSSCCSSCCS--------CCTTCCEEECC
T ss_pred CEEECCCCcCCcCCCCcCcccEEECcCCcCCcc-cc-cC--CCCCCCEEECCCCcCCcccc--------cccccCEEECC
Confidence 3333333322211 1224666666666666644 32 44 56677777777777666441 24666666666
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.90 E-value=2.5e-09 Score=122.83 Aligned_cols=202 Identities=17% Similarity=0.095 Sum_probs=93.5
Q ss_pred HHHHhhChhHHHHHHhhhccccCCCcchhhhhhhccccccCCCCcch-hhHHHhhhcccccCCCCceeEEeecccccccc
Q 002880 91 FSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNV-EDILESEIHNATEKGDGTVKWLELEDADIGDD 169 (871)
Q Consensus 91 ~~ql~~~p~L~~rl~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~L~~~~i~d~ 169 (871)
.+.+.++|.-..+|..|..++++.+.-...+++ ......++ ...+..|.. ..++.|++++|+++..
T Consensus 20 ~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~------~~~~l~~L~~l~l~~c~~-------~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 20 SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP------GNGEQREMAVSRLRDCLD-------RQAHELELNNLGLSSL 86 (454)
T ss_dssp --------------CCHHHHHHHHHHHHHTSCT------TSCCCHHHHHHHHHHHHH-------HTCSEEECTTSCCSCC
T ss_pred cCchhhCChhHhcccchhhhhccCCcccccCCc------ccccchhcchhhhhhhhc-------cCCCEEEecCCccccC
Confidence 345677888888888888887766522112222 22222222 122333421 2356777777777652
Q ss_pred ccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccc
Q 002880 170 MLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF 249 (871)
Q Consensus 170 ~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~ 249 (871)
.. ..++|+.|+|++|+++.++ ..+++|+.|+|++|.+.+.. ...++|+.++++.+...
T Consensus 87 p~-------~~~~L~~L~l~~n~l~~lp------~~~~~L~~L~l~~n~l~~l~---------~~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 87 PE-------LPPHLESLVASCNSLTELP------ELPQSLKSLLVDNNNLKALS---------DLPPLLEYLGVSNNQLE 144 (454)
T ss_dssp CS-------CCTTCSEEECCSSCCSSCC------CCCTTCCEEECCSSCCSCCC---------SCCTTCCEEECCSSCCS
T ss_pred CC-------CcCCCCEEEccCCcCCccc------cccCCCcEEECCCCccCccc---------CCCCCCCEEECcCCCCC
Confidence 11 1356777777777766532 12356667777776665432 11134555544433211
Q ss_pred ccccccccccccCCCCCCCcccc-CCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhc
Q 002880 250 GEWALGFCGEVYDKDNPSSLCLR-DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328 (871)
Q Consensus 250 ~~~~l~~~~~~~~~~~~~~i~~~-~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~ 328 (871)
+.-++..+.++..+++.++-..+ ...+.+|+.|+|++|.++++ | .+. .+++|+.|+|++|.+.+++.
T Consensus 145 ~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l-~-~~~--~l~~L~~L~l~~N~l~~l~~-------- 212 (454)
T 1jl5_A 145 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL-P-ELQ--NLPFLTAIYADNNSLKKLPD-------- 212 (454)
T ss_dssp SCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-C-CCT--TCTTCCEEECCSSCCSSCCC--------
T ss_pred CCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcC-c-ccc--CCCCCCEEECCCCcCCcCCC--------
Confidence 11123333333333333222211 11234677777777777764 3 344 67777777777777766431
Q ss_pred CCCCcceeEee
Q 002880 329 GFPCLQSLGVD 339 (871)
Q Consensus 329 ~lp~L~~L~L~ 339 (871)
..++|+.|+++
T Consensus 213 ~~~~L~~L~l~ 223 (454)
T 1jl5_A 213 LPLSLESIVAG 223 (454)
T ss_dssp CCTTCCEEECC
T ss_pred CcCcccEEECc
Confidence 23466666665
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.90 E-value=4.1e-09 Score=124.46 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=37.9
Q ss_pred cCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHH-HhcCCCCcceeEee
Q 002880 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE-VLKGFPCLQSLGVD 339 (871)
Q Consensus 275 ~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~-~l~~lp~L~~L~L~ 339 (871)
.+++|+.|+|++|.|+++ |. |. ++|+.|+|++|+|++++. ++. +....+.|+.|+|+
T Consensus 158 ~l~~L~~L~Ls~N~L~~l-p~-l~----~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTFL-PE-LP----ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCR 215 (571)
T ss_dssp CCTTCCEEECCSSCCSCC-CC-CC----TTCCEEECCSSCCSSCCC--CC--------CCEEEECC
T ss_pred cCCCcCEEECCCCCCCCc-ch-hh----CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecC
Confidence 367889999999999885 44 43 889999999999887663 211 11222334888887
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.89 E-value=3.3e-09 Score=125.20 Aligned_cols=129 Identities=20% Similarity=0.182 Sum_probs=83.9
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.|+|++|+|+. .+..+ +++|+.|+|++|+|+.+ | ..+++|+.|+|++|.|++... +. .
T Consensus 60 ~L~~L~Ls~n~L~~---lp~~l---~~~L~~L~Ls~N~l~~i---p---~~l~~L~~L~Ls~N~l~~ip~--l~----~- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS---LPDNL---PPQITVLEITQNALISL---P---ELPASLEYLDACDNRLSTLPE--LP----A- 120 (571)
T ss_dssp TCSEEECCSSCCSC---CCSCC---CTTCSEEECCSSCCSCC---C---CCCTTCCEEECCSSCCSCCCC--CC----T-
T ss_pred CccEEEeCCCCCCc---cCHhH---cCCCCEEECcCCCCccc---c---cccCCCCEEEccCCCCCCcch--hh----c-
Confidence 47788888888875 22222 47888888888888854 2 567888888888888866331 11 1
Q ss_pred CCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCC
Q 002880 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314 (871)
Q Consensus 235 lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~ 314 (871)
+|+.++++.+... .+|. .+++|+.|+|++|.|+++ |. .+++|+.|+|++|+
T Consensus 121 --~L~~L~Ls~N~l~--------------~lp~-------~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 121 --SLKHLDVDNNQLT--------------MLPE-------LPALLEYINADNNQLTML-PE-----LPTSLEVLSVRNNQ 171 (571)
T ss_dssp --TCCEEECCSSCCS--------------CCCC-------CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSC
T ss_pred --CCCEEECCCCcCC--------------CCCC-------cCccccEEeCCCCccCcC-CC-----cCCCcCEEECCCCC
Confidence 5555554432211 1111 366788888888888775 33 36778888888888
Q ss_pred CCCcchHHHHHHhcCCCCcceeEee
Q 002880 315 LEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 315 L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|++++. +. ++|+.|+|+
T Consensus 172 L~~lp~------l~--~~L~~L~Ls 188 (571)
T 3cvr_A 172 LTFLPE------LP--ESLEALDVS 188 (571)
T ss_dssp CSCCCC------CC--TTCCEEECC
T ss_pred CCCcch------hh--CCCCEEECc
Confidence 877552 22 778888887
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=2.1e-09 Score=106.63 Aligned_cols=101 Identities=20% Similarity=0.294 Sum_probs=82.4
Q ss_pred CCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccccccccccccccc
Q 002880 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (871)
Q Consensus 182 ~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~ 261 (871)
..+.|++++|+|+.++ ..+ .++|+.|+|++|.|.+..++.|
T Consensus 10 ~~~~l~~s~n~l~~ip---~~~--~~~l~~L~L~~N~i~~~~~~~~---------------------------------- 50 (170)
T 3g39_A 10 SGTTVDCSGKSLASVP---TGI--PTTTQVLYLYDNQITKLEPGVF---------------------------------- 50 (170)
T ss_dssp ETTEEECTTSCCSSCC---SCC--CTTCSEEECCSSCCCCCCTTTT----------------------------------
T ss_pred CCCEEEeCCCCcCccC---ccC--CCCCcEEEcCCCcCCccChhhh----------------------------------
Confidence 3578999999999753 223 3899999999999966542111
Q ss_pred CCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 262 ~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..+++|+.|+|++|+|+++++..|. .+++|+.|+|++|+|.+++.. .+.++++|+.|+|+
T Consensus 51 ------------~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 51 ------------DRLTQLTRLDLDNNQLTVLPAGVFD--KLTQLTQLSLNDNQLKSIPRG----AFDNLKSLTHIWLL 110 (170)
T ss_dssp ------------TTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECC
T ss_pred ------------cCcccCCEEECCCCCcCccChhhcc--CCCCCCEEECCCCccCEeCHH----HhcCCCCCCEEEeC
Confidence 1277899999999999999888887 899999999999999986643 57889999999998
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=1.8e-09 Score=127.54 Aligned_cols=57 Identities=25% Similarity=0.441 Sum_probs=30.2
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+++|+.|+||+|.|+++ | .+. .+++|+.|+|++|+|+++. .|..+++|++|+.|+|+
T Consensus 485 l~~L~~L~Ls~N~l~~l-p-~l~--~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 485 LRCLEVLQASDNALENV-D-GVA--NLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGT--TCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECT
T ss_pred CCCCCEEECCCCCCCCC-c-ccC--CCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEec
Confidence 45555556666655554 3 343 4555666666666555531 02345555556655555
No 130
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=131.45 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=111.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|.|.... ......+++|+.|+|++|+|+.+ .+..+..+++|+.|+|++|.+.+..+.. +.
T Consensus 266 ~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~ 335 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLN---SRVFETLKDLKVLNLAYNKINKI--ADEAFYGLDNLQVLNLSYNLLGELYSSN-----FY 335 (844)
T ss_dssp SCCCEEECTTCCCCEEC---SCCSSSCCCCCEEEEESCCCCEE--CTTTTTTCSSCCEEEEESCCCSCCCSCS-----CS
T ss_pred CCccEEECCCCcccccC---hhhhhcCCCCCEEECCCCcCCCC--ChHHhcCCCCCCEEECCCCCCCccCHHH-----hc
Confidence 46889999999887532 23456789999999999999865 2467889999999999999997654322 34
Q ss_pred cCCCcccccccccccc--ccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEecc
Q 002880 234 GCPKLEIYNSNFTINF--GEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~--~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs 311 (871)
.+++|+.++++.+... +...+..+..+..+++.++-..+...+++|+.|+|++|.++.+ |. ...+|+.|+|+
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l-~~-----~~~~l~~L~ls 409 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL-PK-----INLTANLIHLS 409 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCC-CC-----CCTTCCEEECC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccc-cc-----cccccceeecc
Confidence 6788888887655322 2223344555555555544444444466777777777777655 22 24566777777
Q ss_pred CCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 312 GNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 312 ~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+|+|.+++. +..+.++++|+.|+++
T Consensus 410 ~N~l~~l~~---~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 410 ENRLENLDI---LYFLLRVPHLQILILN 434 (844)
T ss_dssp SCCCCSSTT---HHHHTTCTTCCEEEEE
T ss_pred cCccccCch---hhhhhcCCccceeeCC
Confidence 777776442 2345677888888777
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.85 E-value=8.5e-09 Score=120.93 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=96.9
Q ss_pred eeEEeecccc-ccccccccccccccCCCCcEeeccCCccccHH--HHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 156 VKWLELEDAD-IGDDMLLSLNLSSKFPDLQALSLCGNKLETVE--IIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 156 l~~L~L~~~~-i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~--~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
++.|+|++|. +++..+.. +...||+|+.|+|++|.+++.+ .++..+..+++|+.|+|++|.+.+...+.+ ..+.
T Consensus 140 L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l-~~~~ 216 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLS--IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL-ETIA 216 (592)
T ss_dssp CCEEEEESCEEEEHHHHHH--HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH-HHHH
T ss_pred CcEEECcCCCCcCHHHHHH--HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH-HHHH
Confidence 6666666664 33322221 3345666666666666654321 133445566666666666666643221122 2233
Q ss_pred hcCCCccccccccccccccc-cccccccccCCCCC--------CCccccCCcCCccceeecCCccccccccccCCCCCCC
Q 002880 233 QGCPKLEIYNSNFTINFGEW-ALGFCGEVYDKDNP--------SSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP 303 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~-~l~~~~~~~~~~~~--------~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~ 303 (871)
..+++|+.+++..+...+.. .+..+.++..+.+. .........+++|+.|+++++....+ |..+. .++
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~--~~~ 293 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFP--FAA 293 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGG--GGG
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHh--hcC
Confidence 45566666655443221100 00111111111110 11112233466777777777644443 44444 577
Q ss_pred CcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchh-hHHhhhCCCccccc
Q 002880 304 SLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA-IEILESLPTLCTLN 362 (871)
Q Consensus 304 ~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~-~~Il~~L~~L~~Ln 362 (871)
+|++|+|++|.+. ...+...+.+|++|+.|++. ..+++.. ..+...+++|+.|+
T Consensus 294 ~L~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 294 QIRKLDLLYALLE---TEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp GCCEEEETTCCCC---HHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEE
T ss_pred CCcEEecCCCcCC---HHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEE
Confidence 8888888888754 33455567778888888776 1122211 23445566666664
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.84 E-value=3e-09 Score=129.28 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=82.2
Q ss_pred CCceeEEeeccccccccc------cccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccccccccc
Q 002880 153 DGTVKWLELEDADIGDDM------LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHC 226 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~------l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~ 226 (871)
...++.++|+.+.|.+.. ..+.+....+++|+.|+|++|+|..+ +..+.+|++|+.|+|++|.|+..
T Consensus 190 ~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l---~~~~~~l~~L~~L~Ls~N~l~~l---- 262 (727)
T 4b8c_D 190 QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI---SANIFKYDFLTRLYLNGNSLTEL---- 262 (727)
T ss_dssp --------------------------------CCCCCCEEECTTSCCSCC---CGGGGGCCSCSCCBCTTSCCSCC----
T ss_pred hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCC---ChhhcCCCCCCEEEeeCCcCccc----
Confidence 345666777777666532 12234456678888888888888753 44566888888888888888632
Q ss_pred chhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcc
Q 002880 227 MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS 306 (871)
Q Consensus 227 ~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~ 306 (871)
+.. ...|++|+.|+++.+... .+|..+ ..+++|+.|+|++|.|+.+ |..|. .|++|+
T Consensus 263 -p~~-~~~l~~L~~L~Ls~N~l~--------------~lp~~~----~~l~~L~~L~L~~N~l~~l-p~~~~--~l~~L~ 319 (727)
T 4b8c_D 263 -PAE-IKNLSNLRVLDLSHNRLT--------------SLPAEL----GSCFQLKYFYFFDNMVTTL-PWEFG--NLCNLQ 319 (727)
T ss_dssp -CGG-GGGGTTCCEEECTTSCCS--------------SCCSSG----GGGTTCSEEECCSSCCCCC-CSSTT--SCTTCC
T ss_pred -Chh-hhCCCCCCEEeCcCCcCC--------------ccChhh----cCCCCCCEEECCCCCCCcc-Chhhh--cCCCcc
Confidence 222 256778887777644211 223333 3488999999999999876 66677 899999
Q ss_pred eEeccCCCCCCcc
Q 002880 307 HLNIRGNPLEQNS 319 (871)
Q Consensus 307 ~LnLs~N~L~~l~ 319 (871)
.|+|++|+|++..
T Consensus 320 ~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 320 FLGVEGNPLEKQF 332 (727)
T ss_dssp CEECTTSCCCSHH
T ss_pred EEeCCCCccCCCC
Confidence 9999999999844
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.83 E-value=2.9e-09 Score=106.15 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=81.2
Q ss_pred CcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccccC
Q 002880 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYD 262 (871)
Q Consensus 183 L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~ 262 (871)
-+.|++++|+|++++ ..+ .++|+.|+|++|.|.+..++.
T Consensus 14 ~~~l~~~~n~l~~iP---~~~--~~~L~~L~Ls~N~l~~~~~~~------------------------------------ 52 (174)
T 2r9u_A 14 QTLVNCQNIRLASVP---AGI--PTDKQRLWLNNNQITKLEPGV------------------------------------ 52 (174)
T ss_dssp SSEEECCSSCCSSCC---SCC--CTTCSEEECCSSCCCCCCTTT------------------------------------
T ss_pred CcEEEeCCCCCCccC---CCc--CCCCcEEEeCCCCccccCHHH------------------------------------
Confidence 478999999998753 333 389999999999996654211
Q ss_pred CCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 263 KDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 263 ~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
...+++|+.|+|++|.|+++++..|. .+++|+.|+|++|+|.+++.. .++++++|+.|+|+
T Consensus 53 ----------~~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 53 ----------FDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNHLKSIPRG----AFDNLKSLTHIYLY 113 (174)
T ss_dssp ----------TTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECC
T ss_pred ----------hcCCcCCCEEECCCCCCCccChhHhC--CcchhhEEECCCCccceeCHH----HhccccCCCEEEeC
Confidence 12377899999999999999777777 899999999999999986632 57889999999988
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.83 E-value=2e-09 Score=130.81 Aligned_cols=144 Identities=18% Similarity=0.099 Sum_probs=76.4
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHH-------HHHHHHhcCCCCCeeeCCCCcccccccccc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVE-------IIVQEVTKLKNLRALWLNNNPVLKKCDHCM 227 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~-------~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~ 227 (871)
.+..|+|..+++..... ..|+.|+|+.|.|..+. ..+..+..+++|+.|+|++|.+....
T Consensus 174 ~~~~l~L~~n~~~~~~~---------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~---- 240 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQ---------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNIS---- 240 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCC----
T ss_pred ccceEEeeCCCCCcchh---------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCC----
Confidence 47788888888876221 22344455555544332 24577899999999999999996443
Q ss_pred hhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcce
Q 002880 228 EDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH 307 (871)
Q Consensus 228 ~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~ 307 (871)
..+ ..+++|+.|+++.+... .+|..+ ..+++|+.|+||+|.|+.+ |..|. .|++|++
T Consensus 241 -~~~-~~l~~L~~L~Ls~N~l~--------------~lp~~~----~~l~~L~~L~Ls~N~l~~l-p~~~~--~l~~L~~ 297 (727)
T 4b8c_D 241 -ANI-FKYDFLTRLYLNGNSLT--------------ELPAEI----KNLSNLRVLDLSHNRLTSL-PAELG--SCFQLKY 297 (727)
T ss_dssp -GGG-GGCCSCSCCBCTTSCCS--------------CCCGGG----GGGTTCCEEECTTSCCSSC-CSSGG--GGTTCSE
T ss_pred -hhh-cCCCCCCEEEeeCCcCc--------------ccChhh----hCCCCCCEEeCcCCcCCcc-Chhhc--CCCCCCE
Confidence 222 26778888877644211 223222 3478899999999999855 77776 7899999
Q ss_pred EeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 308 LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
|+|++|.|..++ ..+++|++|+.|+|+
T Consensus 298 L~L~~N~l~~lp-----~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 298 FYFFDNMVTTLP-----WEFGNLCNLQFLGVE 324 (727)
T ss_dssp EECCSSCCCCCC-----SSTTSCTTCCCEECT
T ss_pred EECCCCCCCccC-----hhhhcCCCccEEeCC
Confidence 999999887654 347888899999887
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.76 E-value=4.5e-09 Score=116.05 Aligned_cols=166 Identities=18% Similarity=0.103 Sum_probs=85.2
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCcccc-HHHHHHHHhcCCCCCe-eeCCCCcccccccccchhHHh
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLET-VEIIVQEVTKLKNLRA-LWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~-~~~i~~~l~~L~~Lk~-L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
.++.|+|++|.|+. .+.+....+++|+.|+|++|++.+ ++ ..++.+|++|.. +.++.|++....+ ..+
T Consensus 31 ~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~--~~~f~~L~~l~~~l~~~~N~l~~l~~-----~~f 100 (350)
T 4ay9_X 31 NAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRIEKANNLLYINP-----EAF 100 (350)
T ss_dssp TCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEEC--TTSBCSCTTCCEEEEEEETTCCEECT-----TSB
T ss_pred CCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccC--hhHhhcchhhhhhhcccCCcccccCc-----hhh
Confidence 46778888887764 223344667888888888887643 21 134566776654 5566677755442 223
Q ss_pred hcCCCccccccccccccccccccccc-----------cccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCC
Q 002880 233 QGCPKLEIYNSNFTINFGEWALGFCG-----------EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~~~~~~~l~~~~-----------~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~ 301 (871)
..+++|+.++++.++....-...++. ......++.... ......++.|+|++|+|+++.+..|.
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i~~i~~~~f~--- 175 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGIQEIHNSAFN--- 175 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCCCEECTTSST---
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccccccCCChhhcc---
Confidence 45667776665444322111111111 011111111100 01112456666666666666444443
Q ss_pred CCCcceEecc-CCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 302 MPSLSHLNIR-GNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 302 l~~L~~LnLs-~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
.++|+.|+++ +|.+..++.+ .++++++|+.|+|+
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~----~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPND----VFHGASGPVILDIS 210 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTT----TTTTEECCSEEECT
T ss_pred ccchhHHhhccCCcccCCCHH----HhccCcccchhhcC
Confidence 4556666665 3555554422 34566666666665
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.75 E-value=3.6e-09 Score=123.97 Aligned_cols=200 Identities=16% Similarity=0.132 Sum_probs=120.4
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCC-ccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N-~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~ 232 (871)
..++.|+|++|.+++..+.. +...||+|+.|+|++| .++. ..++..+.+|++|+.|+|++|.+.+... .....+.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLEL--IAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSG-HWLSHFP 180 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHH--HHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCG-GGGGGSC
T ss_pred CCCCeEEeeCcEEcHHHHHH--HHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcch-HHHHHHh
Confidence 46899999999998865443 4446899999999999 5553 3456677799999999999999865432 2233445
Q ss_pred hcCCCcccccccccc-cccccc----ccccccccCCCCCCCccc-----cCCcCCccceeecCCcc--------------
Q 002880 233 QGCPKLEIYNSNFTI-NFGEWA----LGFCGEVYDKDNPSSLCL-----RDRPLQSVTSLDLSNRC-------------- 288 (871)
Q Consensus 233 ~~lp~Le~lnl~~t~-~~~~~~----l~~~~~~~~~~~~~~i~~-----~~~~l~~L~~LdLS~N~-------------- 288 (871)
..+++|+.++++.++ ..+... ...|.++..+++.++... ....+++|+.|+++.+.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 678899999988775 111111 123455555555444110 11234556666644441
Q ss_pred ------------ccccccccCCC--CCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchh-hHHhh
Q 002880 289 ------------IHNLVNKAFSP--AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA-IEILE 353 (871)
Q Consensus 289 ------------I~~l~p~~~~~--~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~-~~Il~ 353 (871)
+....+..+.. ..+++|+.|+|++|.+. ...+...+.+|++|++|+++-. +++.. ..+..
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~---~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~ 335 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ---SYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLAS 335 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC---HHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHH
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC---HHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHH
Confidence 11111111110 03678888888888855 3445666778888888888722 22211 23344
Q ss_pred hCCCccccc
Q 002880 354 SLPTLCTLN 362 (871)
Q Consensus 354 ~L~~L~~Ln 362 (871)
.+++|+.|+
T Consensus 336 ~~~~L~~L~ 344 (594)
T 2p1m_B 336 TCKDLRELR 344 (594)
T ss_dssp HCTTCCEEE
T ss_pred hCCCCCEEE
Confidence 577776663
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.73 E-value=3.2e-09 Score=117.25 Aligned_cols=169 Identities=17% Similarity=0.148 Sum_probs=105.0
Q ss_pred CCceeEEeeccccccccccccccccccCCCCcE-eeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHH
Q 002880 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQA-LSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~-L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i 231 (871)
-..++.|+|++|.|.+ ..+.+....+++|.+ +.+++|+|+.+. +..+..|++|+.|+|++|.+....+..+.
T Consensus 53 l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l~--~~~f~~l~~L~~L~l~~n~l~~~~~~~~~--- 125 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANNLLYIN--PEAFQNLPNLQYLLISNTGIKHLPDVHKI--- 125 (350)
T ss_dssp CTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEEEETTCCEEC--TTSBCCCTTCCEEEEEEECCSSCCCCTTC---
T ss_pred CCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcccCCcccccC--chhhhhccccccccccccccccCCchhhc---
Confidence 4679999999999854 223344566777765 677889998763 46789999999999999999765532221
Q ss_pred hhcCCCccccccccccc---ccccccc-ccccccCCCCCC----CccccCCcCCccceeecCC-ccccccccccCCCCCC
Q 002880 232 LQGCPKLEIYNSNFTIN---FGEWALG-FCGEVYDKDNPS----SLCLRDRPLQSVTSLDLSN-RCIHNLVNKAFSPAEM 302 (871)
Q Consensus 232 ~~~lp~Le~lnl~~t~~---~~~~~l~-~~~~~~~~~~~~----~i~~~~~~l~~L~~LdLS~-N~I~~l~p~~~~~~~l 302 (871)
...++..+++.-... .+...+. ....+..+.+.+ .+..+.....+|..|+|++ |.++.+.+..|. .+
T Consensus 126 --~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~--~l 201 (350)
T 4ay9_X 126 --HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH--GA 201 (350)
T ss_dssp --CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTT--TE
T ss_pred --ccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhc--cC
Confidence 222333333221111 1111111 111111122221 2222334467899999985 777777667888 89
Q ss_pred CCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 303 PSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 303 ~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
++|+.|||++|+|+.++.. .|.+|+.|.+.
T Consensus 202 ~~L~~LdLs~N~l~~lp~~-------~~~~L~~L~~l 231 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPSY-------GLENLKKLRAR 231 (350)
T ss_dssp ECCSEEECTTSCCCCCCSS-------SCTTCCEEECT
T ss_pred cccchhhcCCCCcCccChh-------hhccchHhhhc
Confidence 9999999999999997743 34555555543
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.73 E-value=1.1e-08 Score=119.91 Aligned_cols=175 Identities=15% Similarity=0.065 Sum_probs=95.3
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeecc-----------CCccccHHHHHHHHhcCCCCCeeeCCCCccccc
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLC-----------GNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls-----------~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~ 222 (871)
..++.|+|+ +.+.+..+.. +...|++|+.|+|+ .|.++. ..+......|++|+.|+|+.|.+++.
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~--~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEV--LAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHH--HHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred cCCCEEecc-CccCHHHHHH--HHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCCccHH
Confidence 457777776 4455443332 34556677777777 245543 22344455566777777766666332
Q ss_pred ccccchhHHhhcCCCcccccccccc---ccccc--------cccccccccCCCCCCC---ccc-----cCCcCCccceee
Q 002880 223 CDHCMEDAILQGCPKLEIYNSNFTI---NFGEW--------ALGFCGEVYDKDNPSS---LCL-----RDRPLQSVTSLD 283 (871)
Q Consensus 223 ~~~~~~~~i~~~lp~Le~lnl~~t~---~~~~~--------~l~~~~~~~~~~~~~~---i~~-----~~~~l~~L~~Ld 283 (871)
....+...+++|+.+++..+. ..+.. .+..|.++..+++..+ +.. ....+++|+.|+
T Consensus 394 ----~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 394 ----SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp ----HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ----HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 233344456666666553211 11110 0112333333332110 100 001266788888
Q ss_pred cCCccccccc-cccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCC
Q 002880 284 LSNRCIHNLV-NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP 341 (871)
Q Consensus 284 LS~N~I~~l~-p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP 341 (871)
|++|.+++.. +..+. .+++|+.|+|++|+|+ ...++..+.++++|+.|+|+-.
T Consensus 470 L~~n~l~~~~~~~~~~--~~~~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSR--GCPNLQKLEMRGCCFS---ERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp ECSCCSSHHHHHHHHT--CCTTCCEEEEESCCCB---HHHHHHHHHHCSSCCEEEEESC
T ss_pred ccCCCCCHHHHHHHHh--cCcccCeeeccCCCCc---HHHHHHHHHhcCccCeeECcCC
Confidence 8888887632 23334 6788888888888864 3456666778888888888833
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.72 E-value=2e-10 Score=116.36 Aligned_cols=128 Identities=27% Similarity=0.355 Sum_probs=98.6
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhh
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~ 233 (871)
..++.|+|++|+|++. + ....+++|+.|+|++|+|+++ +..+..+++|+.|+|++|.+.+.. .+
T Consensus 48 ~~L~~L~ls~n~l~~l---~--~~~~l~~L~~L~l~~n~l~~l---~~~~~~~~~L~~L~L~~N~l~~l~------~~-- 111 (198)
T 1ds9_A 48 KACKHLALSTNNIEKI---S--SLSGMENLRILSLGRNLIKKI---ENLDAVADTLEELWISYNQIASLS------GI-- 111 (198)
T ss_dssp TTCSEEECSEEEESCC---C--CHHHHTTCCEEEEEEEEECSC---SSHHHHHHHCSEEEEEEEECCCHH------HH--
T ss_pred CCCCEEECCCCCCccc---c--ccccCCCCCEEECCCCCcccc---cchhhcCCcCCEEECcCCcCCcCC------cc--
Confidence 4689999999999872 2 446789999999999999965 456777899999999999995432 00
Q ss_pred cCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcccccccc-ccCCCCCCCCcceEeccC
Q 002880 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRG 312 (871)
Q Consensus 234 ~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs~ 312 (871)
..+++|+.|+|++|.|+++.+ ..+. .+++|++|+|++
T Consensus 112 ----------------------------------------~~l~~L~~L~l~~N~i~~~~~~~~l~--~l~~L~~L~l~~ 149 (198)
T 1ds9_A 112 ----------------------------------------EKLVNLRVLYMSNNKITNWGEIDKLA--ALDKLEDLLLAG 149 (198)
T ss_dssp ----------------------------------------HHHHHSSEEEESEEECCCHHHHHHHT--TTTTCSEEEECS
T ss_pred ----------------------------------------ccCCCCCEEECCCCcCCchhHHHHHh--cCCCCCEEEecC
Confidence 115679999999999998744 4566 799999999999
Q ss_pred CCCCCcch-----HHH-HHHhcCCCCcceeEee
Q 002880 313 NPLEQNSV-----REL-LEVLKGFPCLQSLGVD 339 (871)
Q Consensus 313 N~L~~l~~-----~~i-~~~l~~lp~L~~L~L~ 339 (871)
|++.+... ..+ ...+..+|+|+.|+-.
T Consensus 150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp CHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred CccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 99876311 111 2347899999999844
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=2.4e-08 Score=109.48 Aligned_cols=89 Identities=21% Similarity=0.306 Sum_probs=52.3
Q ss_pred ccCCCCcEeeccC-CccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccc
Q 002880 178 SKFPDLQALSLCG-NKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF 256 (871)
Q Consensus 178 ~~~p~L~~L~Ls~-N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~ 256 (871)
..+++|+.|+|++ |+|+.+. +..|++|++|+.|+|++|.|.+..++.|
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~----------------------------- 76 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPDAF----------------------------- 76 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCEECTTGG-----------------------------
T ss_pred CCCCCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccceeCHHHh-----------------------------
Confidence 3455666667764 6666542 2456666666666666666654431111
Q ss_pred cccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCC
Q 002880 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317 (871)
Q Consensus 257 ~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~ 317 (871)
..+++|+.|+|++|.|+++++..|. .++ |+.|+|++|+|..
T Consensus 77 -----------------~~l~~L~~L~l~~N~l~~~~~~~~~--~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 -----------------HFTPRLSRLNLSFNALESLSWKTVQ--GLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -----------------GSCSCCCEEECCSSCCSCCCSTTTC--SCC-CCEEECCSSCCCC
T ss_pred -----------------cCCcCCCEEeCCCCccceeCHHHcc--cCC-ceEEEeeCCCccC
Confidence 1155666777777777766555554 333 7777777777664
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=2.2e-08 Score=109.82 Aligned_cols=99 Identities=24% Similarity=0.329 Sum_probs=79.8
Q ss_pred cEeeccCC-ccccHHHHHHHHhcCCCCCeeeCCC-CcccccccccchhHHhhcCCCcccccccccccccccccccccccc
Q 002880 184 QALSLCGN-KLETVEIIVQEVTKLKNLRALWLNN-NPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261 (871)
Q Consensus 184 ~~L~Ls~N-~L~~~~~i~~~l~~L~~Lk~L~Ls~-N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~ 261 (871)
..+++++| +|+. +|. +..+++|+.|+|++ |.|.+..++. |
T Consensus 11 ~~v~~~~~n~l~~---ip~-l~~~~~L~~L~l~~~n~l~~~~~~~--------~-------------------------- 52 (347)
T 2ifg_A 11 SGLRCTRDGALDS---LHH-LPGAENLTELYIENQQHLQHLELRD--------L-------------------------- 52 (347)
T ss_dssp SCEECCSSCCCTT---TTT-SCSCSCCSEEECCSCSSCCEECGGG--------S--------------------------
T ss_pred CEEEcCCCCCCCc---cCC-CCCCCCeeEEEccCCCCCCCcChhH--------h--------------------------
Confidence 35788888 8886 456 99999999999996 9996554211 1
Q ss_pred CCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 262 ~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..+++|+.|+|++|.|++++|..|. .|++|+.|+|++|+|.+++.. .+..++ |+.|+|.
T Consensus 53 ------------~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~----~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 53 ------------RGLGELRNLTIVKSGLRFVAPDAFH--FTPRLSRLNLSFNALESLSWK----TVQGLS-LQELVLS 111 (347)
T ss_dssp ------------CSCCCCSEEECCSSCCCEECTTGGG--SCSCCCEEECCSSCCSCCCST----TTCSCC-CCEEECC
T ss_pred ------------ccccCCCEEECCCCccceeCHHHhc--CCcCCCEEeCCCCccceeCHH----HcccCC-ceEEEee
Confidence 2378899999999999999888888 899999999999999987643 444555 8888887
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.64 E-value=1.4e-08 Score=118.87 Aligned_cols=81 Identities=21% Similarity=0.195 Sum_probs=57.7
Q ss_pred cCCccceeecCCcccccccc-ccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeC--------CCCCC
Q 002880 275 PLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI--------PGPLG 345 (871)
Q Consensus 275 ~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~i--------P~~l~ 345 (871)
.+++|+.|+|++|.+++... ..+. .+++|+.|+|++| +. ...+.....+|++|++|++.- ...++
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~--~~~~L~~L~l~~~-~~---~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLC--QCPKLQRLWVLDY-IE---DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHT--TCTTCCEEEEEGG-GH---HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHh--cCCCcCEEeCcCc-cC---HHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 46899999999999776432 2234 7899999999998 33 456677777899999999941 12333
Q ss_pred chh-hHHhhhCCCcccc
Q 002880 346 ESA-IEILESLPTLCTL 361 (871)
Q Consensus 346 ~~~-~~Il~~L~~L~~L 361 (871)
+.. ..+...+++|+.|
T Consensus 361 ~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESV 377 (594)
T ss_dssp HHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHhchhHHHH
Confidence 332 3344568888887
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=1.8e-08 Score=112.83 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=103.4
Q ss_pred CceeEEeeccccccccccccccccccCCCCcEeeccCCccccHH--HHHHHH-hcCCCCCeeeCCCCcccccccccchhH
Q 002880 154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVE--IIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDA 230 (871)
Q Consensus 154 ~~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~--~i~~~l-~~L~~Lk~L~Ls~N~l~~~~~~~~~~~ 230 (871)
..++.|+|++|+|++..... +...+++|+.|+|++|+|++.+ .+...+ ...++|+.|+|++|.|+......+..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~--l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~- 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRT--LLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME- 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHH--THHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-
T ss_pred CCceEEEecCCCCCHHHHHH--HHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-
Confidence 56999999999998855443 4455678999999999998543 233444 35789999999999986533222322
Q ss_pred HhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccc----cCCCCCCCCcc
Q 002880 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK----AFSPAEMPSLS 306 (871)
Q Consensus 231 i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~----~~~~~~l~~L~ 306 (871)
.+..+++|+.++++.+.........++. .....++|+.|+|++|.|+..... .+. .+++|+
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------------~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~--~~~~L~ 242 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAA-------------QLDRNRQLQELNVAYNGAGDTAALALARAAR--EHPSLE 242 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHH-------------HGGGCSCCCEEECCSSCCCHHHHHHHHHHHH--HCSSCC
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHH-------------HHhcCCCcCeEECCCCCCCHHHHHHHHHHHH--hCCCCC
Confidence 2356888999988776432111111111 112356899999999999875332 233 578999
Q ss_pred eEeccCCCCCCcchHHHHH
Q 002880 307 HLNIRGNPLEQNSVRELLE 325 (871)
Q Consensus 307 ~LnLs~N~L~~l~~~~i~~ 325 (871)
.|+|++|.|.+.....+..
T Consensus 243 ~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 243 LLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp EEECTTSSCCHHHHHHHHH
T ss_pred EEeccCCCCCHHHHHHHHH
Confidence 9999999998755444333
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=4.8e-08 Score=106.73 Aligned_cols=193 Identities=10% Similarity=0.085 Sum_probs=126.3
Q ss_pred CCceeEEeeccccccc-------cc----------ccccccccc--------CCCCcEeeccCCccccHHHHHHHHhcCC
Q 002880 153 DGTVKWLELEDADIGD-------DM----------LLSLNLSSK--------FPDLQALSLCGNKLETVEIIVQEVTKLK 207 (871)
Q Consensus 153 ~~~l~~L~L~~~~i~d-------~~----------l~~~~l~~~--------~p~L~~L~Ls~N~L~~~~~i~~~l~~L~ 207 (871)
...++.|+|++|.|.. .. ..+...... |++|++|.|.+ +++.++. .+|.+|+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~--~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED--AAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT--TTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhH--HHhhcCc
Confidence 3568999999999981 00 122234456 99999999999 8887654 6799999
Q ss_pred CCCeeeCCCCcccccccccchhHHhhcCCCccccccccccc---------------------------------------
Q 002880 208 NLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTIN--------------------------------------- 248 (871)
Q Consensus 208 ~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~--------------------------------------- 248 (871)
+|+.|+|++|.+....++.|. .+.++..+.......
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~-----~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALA-----DSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSC-----TTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred ccceEEcCCCCccccchhhhc-----CCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 999999999998655543332 233433332221000
Q ss_pred -------------ccccc---c-cccccccCCCCCCC-ccc----cCCcCCccceeecCCccccccccccCCCCCCCCcc
Q 002880 249 -------------FGEWA---L-GFCGEVYDKDNPSS-LCL----RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS 306 (871)
Q Consensus 249 -------------~~~~~---l-~~~~~~~~~~~~~~-i~~----~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~ 306 (871)
..... + ..|.++..++++.+ +.. .-..+.+|+.|+|++| |..+.+.+|. .+++|+
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~--~~~~L~ 276 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS--NCGRLA 276 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCC
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh--CChhcc
Confidence 00000 0 13677777777663 322 1245778999999998 8888778888 899999
Q ss_pred -eEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCCccccc
Q 002880 307 -HLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362 (871)
Q Consensus 307 -~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~Ln 362 (871)
.|+|.+ .+..++. ..+.+|++|+.|+++ |..+..........+++|+.|.
T Consensus 277 ~~l~l~~-~l~~I~~----~aF~~c~~L~~l~l~-~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 277 GTLELPA-SVTAIEF----GAFMGCDNLRYVLAT-GDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECT-TCCEECT----TTTTTCTTEEEEEEC-SSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEEEcc-cceEEch----hhhhCCccCCEEEeC-CCccCccchhhhcCCcchhhhc
Confidence 999988 7776553 378899999999985 2222222233466777777653
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=6.4e-08 Score=97.37 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCCCcceEec--cCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 301 EMPSLSHLNI--RGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 301 ~l~~L~~LnL--s~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..++|++|+| ++|.|.......+...+...++|++|+|+
T Consensus 119 ~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 3455666666 55666554444455555566666666655
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.49 E-value=1.4e-07 Score=100.79 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=78.6
Q ss_pred CCCCcE--eeccCCccccHHHHHHHH-hcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccc
Q 002880 180 FPDLQA--LSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF 256 (871)
Q Consensus 180 ~p~L~~--L~Ls~N~L~~~~~i~~~l-~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~ 256 (871)
.|.|.. ++++.|....+..+.... .+|++|+.|+||+|.|.+.. ++.. ..
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~--~l~~-~~------------------------ 192 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD--DMSS-IV------------------------ 192 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCG--GGTT-HH------------------------
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCc--cchh-HH------------------------
Confidence 355665 778888776665544444 67899999999999996643 1110 00
Q ss_pred cccccCCCCCCCccccCCcCCccceeecCCcccccccc-ccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcce
Q 002880 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335 (871)
Q Consensus 257 ~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p-~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~ 335 (871)
..+++|+.|+||+|.|+++.. ..+. .+ +|+.|+|++|++.+-
T Consensus 193 -----------------~~l~~L~~L~Ls~N~i~~~~~l~~l~--~l-~L~~L~L~~Npl~~~----------------- 235 (267)
T 3rw6_A 193 -----------------QKAPNLKILNLSGNELKSERELDKIK--GL-KLEELWLDGNSLCDT----------------- 235 (267)
T ss_dssp -----------------HHSTTCCEEECTTSCCCSGGGGGGGT--TS-CCSEEECTTSTTGGG-----------------
T ss_pred -----------------hhCCCCCEEECCCCccCCchhhhhcc--cC-CcceEEccCCcCccc-----------------
Confidence 126678999999999988722 2222 34 899999999998750
Q ss_pred eEeeCCCCCCchhhHHhhhCCCcccccCcccc
Q 002880 336 LGVDIPGPLGESAIEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 336 L~L~iP~~l~~~~~~Il~~L~~L~~Ln~~~vs 367 (871)
+| ...++...+++.+|+|+.|||..|+
T Consensus 236 ----~~-~~~~y~~~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 236 ----FR-DQSTYISAIRERFPKLLRLDGHELP 262 (267)
T ss_dssp ----CS-SHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred ----cC-cchhHHHHHHHHCcccCeECCcCCC
Confidence 00 0012234578888888888888877
No 147
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.46 E-value=6.5e-07 Score=96.25 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=100.0
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCC-hhHH----HhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETH-LPQL----IGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIR 675 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~e-l~~f----~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~ 675 (871)
....|..+.+.++++ |-+ .|+|+.+.+. +.++ +..+. ...+-.+|+||..++.|+|+.++++.+++..
T Consensus 93 ~~~dK~~~~~~l~~~-gi~--~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~ 165 (306)
T 1iow_A 93 LSMDKLRSKLLWQGA-GLP--VAPWVALTRAEFEKGLSDKQLAEI----SALGLPVIVKPSREGSSVGMSKVVAENALQD 165 (306)
T ss_dssp HHHCHHHHHHHHHHT-TCC--BCCEEEEEHHHHHHCCCTHHHHHH----HTTCSSEEEEETTCCTTTTCEEESSGGGHHH
T ss_pred HHcCHHHHHHHHHHC-CCC--CCCeEEEchhhhhccchhhhhhHH----hccCCCEEEEeCCCCCCCCEEEeCCHHHHHH
Confidence 457788888877765 433 6777765432 2220 00011 1123479999999999999999998877765
Q ss_pred Hhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccc
Q 002880 676 LME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYG 750 (871)
Q Consensus 676 ~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~ 750 (871)
..+ ..+++||+||+ |+ ++|+.++ .. +++ +.++..... .+.++.. +|.
T Consensus 166 ~~~~~~~~~~~~lvee~i~------g~--e~~v~~~-~g----~~~----~~~~~~~~~------~~~~~~~-----~~~ 217 (306)
T 1iow_A 166 ALRLAFQHDEEVLIEKWLS------GP--EFTVAIL-GE----EIL----PSIRIQPSG------TFYDYEA-----KFL 217 (306)
T ss_dssp HHHHHTTTCSEEEEEECCC------CC--EEEEEEE-TT----EEC----CCEEEECSS------SSSCHHH-----HHT
T ss_pred HHHHHHhhCCCEEEEeCcC------CE--EEEEEEE-CC----Ccc----ceEEEEeCC------CeEchhh-----eec
Confidence 443 46899999997 44 6777666 21 111 111111110 0111111 111
Q ss_pred cC-CCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCC
Q 002880 751 RR-FNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCP 828 (871)
Q Consensus 751 ~~-~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P 828 (871)
.+ .... .+. .-+.+.+++.+++.+++.+. ++...+++||++|.+++||+||||..|
T Consensus 218 ~g~~~~~------------~p~~l~~~~~~~i~~~a~~~~~~l----------g~~G~~~vD~~~~~~g~~~~iEiN~rp 275 (306)
T 1iow_A 218 SDETQYF------------CPAGLEASQEANLQALVLKAWTTL----------GCKGWGRIDVMLDSDGQFYLLEANTSP 275 (306)
T ss_dssp CSCCEEE------------SSCCCCHHHHHHHHHHHHHHHHHH----------TCCSEEEEEEEECTTSCEEEEEEESSC
T ss_pred CCCeeEE------------cCCCCCHHHHHHHHHHHHHHHHHc----------CCceEEEEEEEEcCCCCEEEEEecCCC
Confidence 00 0000 000 00233445555555555443 124578999999999999999999999
Q ss_pred CCCcc
Q 002880 829 DCTRA 833 (871)
Q Consensus 829 ~l~~~ 833 (871)
.....
T Consensus 276 g~~~~ 280 (306)
T 1iow_A 276 GMTSH 280 (306)
T ss_dssp CCSTT
T ss_pred CCCCC
Confidence 98653
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=2.3e-07 Score=93.31 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=95.9
Q ss_pred CcchhhHHHhhhcccccCCCCceeEEeeccc-ccccccccccc-ccccCCCCcEeeccCCccccHH--HHHHHHhcCCCC
Q 002880 134 KSNVEDILESEIHNATEKGDGTVKWLELEDA-DIGDDMLLSLN-LSSKFPDLQALSLCGNKLETVE--IIVQEVTKLKNL 209 (871)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~-~i~d~~l~~~~-l~~~~p~L~~L~Ls~N~L~~~~--~i~~~l~~L~~L 209 (871)
..++.+.|.+.... ...++.|+|++| +|++.+...+. ....+++|+.|+|++|+|.+.+ .+...+...++|
T Consensus 21 ~~~~~~~l~~~l~~-----~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 21 STDVEETLKRIQNN-----DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp CCCHHHHHHHHHTT-----CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred ccHHHHHHHHHHhc-----CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence 34455555444322 456899999999 99997665543 4466899999999999998644 456778888999
Q ss_pred CeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeec--CCc
Q 002880 210 RALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL--SNR 287 (871)
Q Consensus 210 k~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdL--S~N 287 (871)
+.|+|++|.|.... ...+...+.. .++|+.|+| ++|
T Consensus 96 ~~L~L~~N~i~~~g----~~~l~~~L~~--------------------------------------n~~L~~L~L~~~~N 133 (185)
T 1io0_A 96 KSLNVESNFISGSG----ILALVEALQS--------------------------------------NTSLIELRIDNQSQ 133 (185)
T ss_dssp CEEECCSSCCCHHH----HHHHHHGGGG--------------------------------------CSSCCEEECCCCSS
T ss_pred CEEECcCCcCCHHH----HHHHHHHHHh--------------------------------------CCCceEEEecCCCC
Confidence 99999999995432 1222222221 567999999 889
Q ss_pred ccccccc----ccCCCCCCCCcceEeccCCCCCC
Q 002880 288 CIHNLVN----KAFSPAEMPSLSHLNIRGNPLEQ 317 (871)
Q Consensus 288 ~I~~l~p----~~~~~~~l~~L~~LnLs~N~L~~ 317 (871)
.|+.... +.+. ..++|+.|+|++|.+..
T Consensus 134 ~i~~~g~~~l~~~L~--~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 134 PLGNNVEMEIANMLE--KNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CCCHHHHHHHHHHHH--HCSSCCEEECCCSSHHH
T ss_pred CCCHHHHHHHHHHHH--hCCCcCEEeccCCCCCh
Confidence 9987532 3333 56899999999999864
No 149
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.43 E-value=2e-06 Score=95.62 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=100.2
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCCh-h----HHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHL-P----QLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el-~----~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
...|..+.+.++++ |-+ .|+|+.+...- . +-+..+. ...+-.+|+||..++.|.|+.++++.+++...
T Consensus 127 ~~dK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~~~~~----~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a 199 (364)
T 2i87_A 127 SMDKLVMKQLFEHR-GLP--QLPYISFLRSEYEKYEHNILKLVN----DKLNYPVFVKPANLGSSVGISKCNNEAELKEG 199 (364)
T ss_dssp HHSHHHHHHHHHHH-TCC--CCCEEEEEHHHHHHHHHHHHHHHH----HHCCSSEEEEESSCSSCTTCEEESSHHHHHHH
T ss_pred HcCHHHHHHHHHHC-CCC--CCCEEEEechhhcccchhHHHHHH----HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHH
Confidence 35677777767655 433 56676654311 0 0111111 11234799999999999999999998877665
Q ss_pred hc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeecccc
Q 002880 677 ME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGR 751 (871)
Q Consensus 677 ~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~ 751 (871)
++ ..+++||+||+ |+ ++++.|+... ++ . +...|-+..... +.++.. +|..
T Consensus 200 ~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~-~~-~--~~~~~e~~~~~~--------~~~~~~-----k~~~ 254 (364)
T 2i87_A 200 IKEAFQFDRKLVIEQGVN------AR--EIEVAVLGND-YP-E--ATWPGEVVKDVA--------FYDYKS-----KYKD 254 (364)
T ss_dssp HHHHHTTCSEEEEEECCC------CE--EEEEEEEESS-SC-E--ECCCEEECCSCC--------C--------------
T ss_pred HHHHHhcCCeEEEEeCcc------Ce--EEEEEEEcCC-Cc-E--EeeeEEEecCCC--------cCCHHH-----cccC
Confidence 43 46799999998 54 6777777542 11 0 111121111000 111111 1110
Q ss_pred CCCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCC
Q 002880 752 RFNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDC 830 (871)
Q Consensus 752 ~~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l 830 (871)
+.... ..+. .-..+.++|.++...++.+. ++....++||++|.+++||+||||..|++
T Consensus 255 g~~~~-----------~~pa~l~~~~~~~i~~~a~~~~~al----------g~~G~~~vD~~~~~~g~~~viEiN~rpg~ 313 (364)
T 2i87_A 255 GKVQL-----------QIPADLDEDVQLTLRNMALEAFKAT----------DCSGLVRADFFVTEDNQIYINETNAMPGF 313 (364)
T ss_dssp --CCE-----------ESSCSSCHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEECTTCCEEEEEEESSCCC
T ss_pred CCeeE-----------EeCCCCCHHHHHHHHHHHHHHHHHc----------CCCcEEEEEEEEecCCCEEEEEEeCCCCC
Confidence 00000 0000 01234556666666555543 23478899999999999999999999998
Q ss_pred Cccc
Q 002880 831 TRAC 834 (871)
Q Consensus 831 ~~~~ 834 (871)
...+
T Consensus 314 t~~s 317 (364)
T 2i87_A 314 TAFS 317 (364)
T ss_dssp STTS
T ss_pred Cchh
Confidence 7543
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=1.5e-07 Score=102.81 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=125.4
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccc--------------------cHHHHHHHHhc--------C
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLE--------------------TVEIIVQEVTK--------L 206 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~--------------------~~~~i~~~l~~--------L 206 (871)
.++.|.+++. |....+.. +...+++|+.|+|++|+|. .++ ..+|.+ |
T Consensus 26 ~l~~L~l~g~-i~~~~~~~--l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRH--LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGK 100 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHH--HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEEEEC
T ss_pred ceeEEEEecc-ccHHHHHH--HHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhccccccccccc
Confidence 4677888764 22221111 2333899999999999998 221 245777 9
Q ss_pred CCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccc--ccccccccccccccCCCCCCCcc--------------
Q 002880 207 KNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTI--NFGEWALGFCGEVYDKDNPSSLC-------------- 270 (871)
Q Consensus 207 ~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~--~~~~~~l~~~~~~~~~~~~~~i~-------------- 270 (871)
++|+.|+|++ .+.... ...+.+|++|+.+++..+. ..+..+...|.....+..+....
T Consensus 101 ~~L~~l~L~~-~i~~I~-----~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIE-----DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp TTCCC-CBCT-TCCEEC-----TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred CCCcEEECCc-cccchh-----HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 9999999999 675554 3445678999888876553 23344444444443333322000
Q ss_pred --------------------------c---------cC----------CcCCccceeecCCccccccccccCCCCCCCCc
Q 002880 271 --------------------------L---------RD----------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305 (871)
Q Consensus 271 --------------------------~---------~~----------~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L 305 (871)
. +. ..+++|+.|+|++|.|+.+.+.+|. .+++|
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~--~~~~L 252 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA--QKKYL 252 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT--TCTTC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh--CCCCC
Confidence 0 00 0267999999999999999888998 89999
Q ss_pred ceEeccCCCCCCcchHHHHHHhcCCCCcc-eeEeeCCCCCCchhhHHhhhCCCccccc
Q 002880 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQ-SLGVDIPGPLGESAIEILESLPTLCTLN 362 (871)
Q Consensus 306 ~~LnLs~N~L~~l~~~~i~~~l~~lp~L~-~L~L~iP~~l~~~~~~Il~~L~~L~~Ln 362 (871)
+.|+|.+| +..++.. .+.+|++|+ .|.+. ..+..........|++|+.|+
T Consensus 253 ~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~--~~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQR----VFSNCGRLAGTLELP--ASVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CEEECCTT-CCEECTT----TTTTCTTCCEEEEEC--TTCCEECTTTTTTCTTEEEEE
T ss_pred CEEECCcc-cceehHH----HhhCChhccEEEEEc--ccceEEchhhhhCCccCCEEE
Confidence 99999998 8876644 688999999 98886 223222234566788888775
No 151
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.36 E-value=2.4e-06 Score=92.99 Aligned_cols=180 Identities=18% Similarity=0.139 Sum_probs=94.7
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccC--CChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLE--THLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~--~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|..+.+.++++ |-+ .|+|+.+. .++.++...... ..+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 105 ~~dK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~~~----~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~ 177 (317)
T 4eg0_A 105 GLDKFRTKLVWQQT-GVP--TPPFETVMRGDDYAARATDIVA----KLGLPLFVKPASEGSSVAVLKVKTADALPAALSE 177 (317)
T ss_dssp HHCHHHHHHHHHHT-TCC--CCCEEEEETTSCHHHHHHHHHH----HHCSCEEEEECC-----CCEEECSGGGHHHHHHH
T ss_pred HhCHHHHHHHHHHC-CcC--CCCEEEEECchhHHHHHHHHHH----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHH
Confidence 45677777777654 432 46666553 345555421100 112468999999999999999999887765443
Q ss_pred ----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCC
Q 002880 679 ----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFN 754 (871)
Q Consensus 679 ----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~ 754 (871)
..+++||+||+. |+ ++++.|+....-|........+ +.++.. +|..+..
T Consensus 178 ~~~~~~~~lvEe~i~~-----G~--E~~v~vl~~~~~~~~~i~~~~~---------------~~~~~~-----k~~~g~~ 230 (317)
T 4eg0_A 178 AATHDKIVIVEKSIEG-----GG--EYTACIAGDLDLPLIKIVPAGE---------------FYDYHA-----KYVANDT 230 (317)
T ss_dssp HTTTCSEEEEEECCCS-----SE--EEEEEEETTCCCCCEEEEC-----------------------------------C
T ss_pred HHhCCCeEEEEcCCCC-----Cc--EEEEEEECCcccceEEEeeCCc---------------eechhh-----cccCCCe
Confidence 357899999983 43 6666665332222111110110 000100 0000000
Q ss_pred CCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCcc
Q 002880 755 HMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRA 833 (871)
Q Consensus 755 ~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~ 833 (871)
.. ..+. .-..+.+++.+++..++.+. ++....++||++|.+++||+||||..|++...
T Consensus 231 ~~-----------~~P~~l~~~~~~~l~~~a~~~~~~l----------g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~ 289 (317)
T 4eg0_A 231 QY-----------LIPCGLPAEQETELKRIARRAFDVL----------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDH 289 (317)
T ss_dssp EE-----------ESSCSSCHHHHHHHHHHHHHHHHTT----------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred eE-----------EcCCCCCHHHHHHHHHHHHHHHHHh----------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCcc
Confidence 00 0000 01233445555555444332 23457899999999999999999999999876
Q ss_pred ccc
Q 002880 834 CKY 836 (871)
Q Consensus 834 ~~~ 836 (871)
+-+
T Consensus 290 s~~ 292 (317)
T 4eg0_A 290 SLP 292 (317)
T ss_dssp SHH
T ss_pred cHH
Confidence 554
No 152
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.32 E-value=4.3e-06 Score=92.13 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=101.2
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCC--hhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETH--LPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~e--l~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|..+.+.++++ |-+ .|+++.+.+. +.+ ...+-.+|+||..++.|.|+.++++.+++....+
T Consensus 130 ~~dK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~----------~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~ 196 (343)
T 1e4e_A 130 CMDKSLTYIVAKNA-GIA--TPAFWVINKDDRPVA----------ATFTYPVFVKPARSGSSFGVKKVNSADELDYAIES 196 (343)
T ss_dssp HHSHHHHHHHHHHT-TCB--CCCEEEECTTCCCCG----------GGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHH
T ss_pred HhCHHHHHHHHHHC-CCC--cCCEEEEechhhhhh----------hccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHH
Confidence 35677777767654 422 5666665431 111 1123469999999999999999998887765442
Q ss_pred ----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCC
Q 002880 679 ----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFN 754 (871)
Q Consensus 679 ----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~ 754 (871)
..+++||+||+ |+ ++++.|+...-. . .+.--+-++.... +.++...++- ..+.+..
T Consensus 197 ~~~~~~~~lvEe~I~------G~--E~~v~vl~~~~~-~--~~~~~~ei~~~~~--------~~~~~~k~~~-~~~~g~~ 256 (343)
T 1e4e_A 197 ARQYDSKILIEQAVS------GC--EVGCAVLGNSAA-L--VVGEVDQIRLQYG--------IFRIHQEVEP-EKGSENA 256 (343)
T ss_dssp HTTTCSSEEEEECCC------SE--EEEEEEEEETTC-C--EECCCEEEEESSS--------CCCGGGSSSG-GGCCSSE
T ss_pred HHhcCCcEEEEeCcC------Ce--EEEEEEEeCCCC-e--EEeeeEEEeeCCC--------ccCHhhcccc-cCCCCCe
Confidence 46799999997 55 566666654211 1 1111111222111 1111111100 0000000
Q ss_pred CCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCcc
Q 002880 755 HMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRA 833 (871)
Q Consensus 755 ~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~ 833 (871)
... .+. .-+.+.++|.++..+++.+. ++....++||++|.+++||+||||..|++...
T Consensus 257 ~~~-----------~p~~l~~~~~~~i~~~a~~~~~al----------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~ 315 (343)
T 1e4e_A 257 VIT-----------VPADLSAEERGRIQETVKKIYKTL----------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSY 315 (343)
T ss_dssp EEC-----------SSCSSCHHHHHHHHHHHHHHHHHT----------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred eEE-----------eCCCCCHHHHHHHHHHHHHHHHHc----------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCcc
Confidence 000 000 01234455666666555543 24688999999999999999999999998754
Q ss_pred c
Q 002880 834 C 834 (871)
Q Consensus 834 ~ 834 (871)
+
T Consensus 316 s 316 (343)
T 1e4e_A 316 S 316 (343)
T ss_dssp C
T ss_pred c
Confidence 4
No 153
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.28 E-value=6.2e-06 Score=91.02 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=100.6
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc---
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME--- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~--- 678 (871)
...|..+.+.++++ |- -.|+++.+...-..+ ....+-.+|+||..++.|.|+.++++.+++.+..+
T Consensus 130 ~~dK~~~k~~l~~~-Gi--p~p~~~~~~~~~~~~--------~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~ 198 (346)
T 3se7_A 130 CMDKSLTYLVARSA-GI--ATPNFWTVTADEKIP--------TDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAR 198 (346)
T ss_dssp HHSHHHHHHHHHHT-TC--BCCCEEEEETTSCCC--------TTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHc-Cc--CcCCEEEEcCcHHHH--------HHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHH
Confidence 34666666666554 32 256666554311111 12233468999999999999999999888776543
Q ss_pred --cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCcccc----ccceeeeccccC
Q 002880 679 --TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEY----ETHFTVMNYGRR 752 (871)
Q Consensus 679 --~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~----~~HlTn~ny~~~ 752 (871)
..+++||+||+ |+ ++++.|+...-.+ .++.-+-+..... +.++ .. .|..+
T Consensus 199 ~~~~~vlvEe~I~------G~--E~~v~vl~~~~~~---~~~~~~e~~~~~~--------~~d~~q~~~~-----ky~~~ 254 (346)
T 3se7_A 199 EYDSKVLIEEAVI------GT--EIGCAVMGNGPEL---ITGEVDQITLSHG--------FFKIHQESTP-----ESGSD 254 (346)
T ss_dssp TTCSEEEEEECCC------SE--EEEEEEEEETTEE---EECCCEEECCC---------------------------CGG
T ss_pred hCCCcEEEEeCcC------CE--EEEEEEEecCCCe---EEEeeEEEecCCC--------CcCcccchhc-----cccCC
Confidence 46799999997 54 6777776542111 1111111111100 1111 11 11100
Q ss_pred CCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 753 FNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 753 ~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
.... ..+. .-+++.++|.++...++.+. ++....++||++|.+++||+||||..|.+.
T Consensus 255 ~~~~-----------~~pa~l~~~~~~~i~~~a~~~~~~l----------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t 313 (346)
T 3se7_A 255 NSAV-----------TVPADISTTSRSLVQDTAKAVYRAL----------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMT 313 (346)
T ss_dssp GSCE-----------ESSCCCCHHHHHHHHHHHHHHHHHH----------TCCEEEEEEEEECTTSCEEEEEEESSCCCS
T ss_pred CeeE-----------EeCCCCCHHHHHHHHHHHHHHHHHh----------CCceEEEEEEEEeCCCCEEEEEEeCCCCCC
Confidence 0000 0000 01234556666666666554 244789999999999999999999999997
Q ss_pred ccccc
Q 002880 832 RACKY 836 (871)
Q Consensus 832 ~~~~~ 836 (871)
..+.+
T Consensus 314 ~~s~~ 318 (346)
T 3se7_A 314 SYSRY 318 (346)
T ss_dssp TTCHH
T ss_pred cccHH
Confidence 66544
No 154
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.28 E-value=4.1e-06 Score=93.01 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=84.5
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
+-.+|+||..+..|+|+.++++.+++.+..+ ....++|+||+ |+.+.+ .|+... ... +..-+.
T Consensus 177 g~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~------G~e~~v--~vl~~~--~~~--~~~v~~ 244 (357)
T 4fu0_A 177 TYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN------GFEVGC--AVLGID--ELI--VGRVDE 244 (357)
T ss_dssp CSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC------SEEEEE--EEEESS--SEE--ECCCEE
T ss_pred CCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC------CEEEEE--EEEecC--Cce--EEEEEE
Confidence 4679999999999999999999888776543 35688999986 555444 333221 000 001111
Q ss_pred EEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 723 VRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQ-VKWLEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 723 vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~-~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
......-|+.. . .|.... ... ..+ ..-+++.++|+++..+++.+.
T Consensus 245 ~~~~~~~~d~~--------~-----k~~~~~-----~~~------~~pa~l~~~~~~~i~~~A~~~~~aL---------- 290 (357)
T 4fu0_A 245 IELSSGFFDYT--------E-----KYTLKS-----SKI------YMPARIDAEAEKRIQEAAVTIYKAL---------- 290 (357)
T ss_dssp EEECHHHHTSC--------S-----BCSSCC-----EEE------ESSCSCCHHHHHHHHHHHHHHHHHT----------
T ss_pred EEccccccccc--------c-----cccCCC-----ceE------ecCCCCCHHHHHHHHHHHHHHHHHh----------
Confidence 11111111111 0 000000 000 000 011345666777776666543
Q ss_pred CcEEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 802 ~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+|..+.++||++|.+++||++|||..|+++..+-+
T Consensus 291 g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~ 325 (357)
T 4fu0_A 291 GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRY 325 (357)
T ss_dssp TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 25678899999999999999999999999875543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=2.9e-07 Score=98.28 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=41.2
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~ 222 (871)
.++|+|+.|+|++|+|+++..++..+.+|++|+.|+|++|.|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 578999999999999999888888889999999999999999654
No 156
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=98.24 E-value=1.1e-05 Score=89.31 Aligned_cols=245 Identities=13% Similarity=0.214 Sum_probs=133.9
Q ss_pred hHHHHHHHHcCCcEEe--CC------CCCceEEEeccCCc------------c---hHHhhhC-CCCCcEEccccCCCcc
Q 002880 547 IPYVEEFLTRTEFVIT--TE------PKDADIIWTSLQVD------------E---DMKTATG-ITDQQYVNQFPFESCL 602 (871)
Q Consensus 547 ~~~V~~~L~~~gf~~~--~~------~~~~di~W~~~~~~------------~---~~~~~~~-l~~~q~vN~fP~~~~l 602 (871)
.+.+.+.|++.|.+.+ +- ....|+++...+.. . .+.++.. ...-..+|-+.+...+
T Consensus 35 ~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp~~ai~~~ 114 (346)
T 2q7d_A 35 FQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTL 114 (346)
T ss_dssp HHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHT
T ss_pred HHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCCHHHHHHh
Confidence 3457778888887653 21 12467777653321 0 0111111 1123467777777778
Q ss_pred cccHHHHHHHHHhc----CCCCcccceeccCC----ChhHHHhhhhhhhccCCCceEEecCCCC--CCCCcEEEecChHH
Q 002880 603 VMKHHLAETVQKAH----GSPEWLQPTYNLET----HLPQLIGDYYVRKRDGLNNLWILKPWNM--ARTIDTSVTDDLSA 672 (871)
Q Consensus 603 t~K~~L~~~l~~~~----g~~~~lP~Tf~L~~----el~~f~~~~~~~~~~~~~~~WIvKP~~~--srG~GI~v~~~l~~ 672 (871)
..|-.+.+.+.+.. ..---.|.|+.+.+ +..+.+. ..+.+-..|+||..+ +.|.|+.++.+.++
T Consensus 115 ~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~------~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~ 188 (346)
T 2q7d_A 115 LDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLE------KNGLTFPFICKTRVAHGTNSHEMAIVFNQEG 188 (346)
T ss_dssp TBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHH------HTTCCSSEEEECSBCSSTTCCEEEEECSGGG
T ss_pred hhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHH------hcCCCCCEEEEecCCCcceeeeeEEecCHHH
Confidence 89999999888751 11124788988865 2333322 123456899999853 44789999998877
Q ss_pred HHHHhccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCC--CCccccccceeeeccc
Q 002880 673 VIRLMETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDK--HSFFEYETHFTVMNYG 750 (871)
Q Consensus 673 i~~~~~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~--~~l~~~~~HlTn~ny~ 750 (871)
+..+ ..+++||+||+. +| .|+|+||+-. ++.. +.|.+...+.... ..+-++.+| +|.
T Consensus 189 l~~~--~~~~lvQefI~~----~G--~dirv~VvG~-----~v~~----~~r~sl~~~~~~~~~~~~~~f~s~----~~~ 247 (346)
T 2q7d_A 189 LNAI--QPPCVVQNFINH----NA--VLYKVFVVGE-----SYTV----VQRPSLKNFSAGTSDRESIFFNSH----NVS 247 (346)
T ss_dssp TTC----CCEEEEECCCC----TT--EEEEEEEETT-----EEEE----EEEECCCCCC----CCCCEEEEGG----GTS
T ss_pred HHhc--CCCEEEEEeeCC----CC--eEEEEEEECC-----EEEE----EEEecCCCcCcCccccccccccce----eec
Confidence 6543 468999999985 34 6999999722 2221 3455544333221 001111221 221
Q ss_pred cCCCCCCChhhHHHH---HHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcC-CCceEEEEecC
Q 002880 751 RRFNHMNTPDFVRGF---EAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDS-SFQPKLLEVTY 826 (871)
Q Consensus 751 ~~~~~~~~~df~~~~---~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~-~~kpwLLEVN~ 826 (871)
...... ++... +...... ..+.+.++..++..+. + ..++|+|+++|. +++|++||||.
T Consensus 248 ~~g~~~----~~~~~~~~~~~~~~~---~~~el~~lA~~a~~al----------G-l~~~gvDii~~~~~g~~~VlEVN~ 309 (346)
T 2q7d_A 248 KPESSS----VLTELDKIEGVFERP---SDEVIRELSRALRQAL----------G-VSLFGIDIIINNQTGQHAVIDINA 309 (346)
T ss_dssp STTCCC----GGGCCSCCCSCCCCC---CHHHHHHHHHHHHHHH----------C-CCEEEEEEEECTTTCCEEEEEEEE
T ss_pred cCCccc----cccccccccccccCC---ChHHHHHHHHHHHHHh----------C-CceEeeEEEeecCCCCEEEEEEeC
Confidence 100000 00000 0000000 0233444444433332 1 237799999997 68999999999
Q ss_pred CCCCCccccc
Q 002880 827 CPDCTRACKY 836 (871)
Q Consensus 827 ~P~l~~~~~~ 836 (871)
.|++.....+
T Consensus 310 ~PG~~g~~~~ 319 (346)
T 2q7d_A 310 FPGYEGVSEF 319 (346)
T ss_dssp SCCCTTCTTH
T ss_pred CccccccchH
Confidence 9999876544
No 157
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.24 E-value=2.2e-05 Score=87.39 Aligned_cols=179 Identities=17% Similarity=0.248 Sum_probs=100.6
Q ss_pred cccHHHHHHHHHhcCCCCcccceeccCC------ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 603 VMKHHLAETVQKAHGSPEWLQPTYNLET------HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 603 t~K~~L~~~l~~~~g~~~~lP~Tf~L~~------el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
..|....+.++++ |-+ .|+++.+.. ++.++...+ +-.+|+||..++.|.|+.++++.+++.+.
T Consensus 139 ~DK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~~~~l--------g~PvvVKP~~ggss~Gv~~v~~~~el~~a 207 (364)
T 3i12_A 139 MDKDVAKRLLRDA-GLN--IAPFITLTRTNRHAFSFAEVESRL--------GLPLFVKPANQGSSVGVSKVANEAQYQQA 207 (364)
T ss_dssp HCHHHHHHHHHHT-TCC--BCCEEEEETTTGGGCCHHHHHHHH--------CSSEEEEETTCCTTTTCEEESSHHHHHHH
T ss_pred HCHHHHHHHHHHC-CCC--CCCEEEEEccccchhhHHHHHHhc--------CCCEEEEECCCCCCcCeEEeCCHHHHHHH
Confidence 4566666666554 422 445544432 344444332 24689999999999999999998887654
Q ss_pred hc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeecccc
Q 002880 677 ME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGR 751 (871)
Q Consensus 677 ~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~ 751 (871)
.+ ..+++||+||+ |+ ++++-|+... .| .+ ...|-+.....-|+ +...++...-..
T Consensus 208 ~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~-~~-~~--~~~~ei~~~~~~~~--------~~~ky~~~~~~~ 267 (364)
T 3i12_A 208 VALAFEFDHKVVVEQGIK------GR--EIECAVLGND-NP-QA--STCGEIVLNSEFYA--------YDTKYIDDNGAQ 267 (364)
T ss_dssp HHHHHHHCSEEEEEECCC------SE--EEEEEEEESS-SC-EE--EEEEEEECCTTCC----------TTTTSGGGGCE
T ss_pred HHHHHhcCCcEEEEcCcC------Ce--EEEEEEEeCC-Cc-eE--eeeEEEecCCCccC--------HHHcccCCCceE
Confidence 43 46799999997 53 5666665432 11 11 11122221111111 111100000000
Q ss_pred CCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 752 RFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 752 ~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
..... +. -.++.++|.+++..++.+. +|....++||++|.+++||++|||..|.+.
T Consensus 268 ~~~Pa-------------~l-~~~~~~~i~~~a~~~~~al----------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t 323 (364)
T 3i12_A 268 VVVPA-------------QI-PSEVNDKIRAIAIQAYQTL----------GCAGMARVDVFLTADNEVVINEINTLPGFT 323 (364)
T ss_dssp EESSC-------------SS-CHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEECTTCCEEEEEEESSCCCS
T ss_pred EEeCC-------------CC-CHHHHHHHHHHHHHHHHHh----------CCceEEEEEEEEecCCCEEEEEeeCCCCCC
Confidence 00000 00 1234455666666555543 245788999999999999999999999997
Q ss_pred ccccc
Q 002880 832 RACKY 836 (871)
Q Consensus 832 ~~~~~ 836 (871)
..+-+
T Consensus 324 ~~s~~ 328 (364)
T 3i12_A 324 NISMY 328 (364)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 65544
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=4.3e-07 Score=101.28 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=108.7
Q ss_pred ceeEEeecccccccccc------ccccccccCCCCcEeeccCCc-cccHHHHHHHHhcCCCCCeeeCCCCcccccccccc
Q 002880 155 TVKWLELEDADIGDDML------LSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCM 227 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l------~~~~l~~~~p~L~~L~Ls~N~-L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~ 227 (871)
.++.|.|......+... ....+...+|+|++|+|++|. +. + +. + .+++|+.|+|+.|.+... .
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l---~~-~-~~~~L~~L~L~~~~l~~~----~ 209 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I---GK-K-PRPNLKSLEIISGGLPDS----V 209 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C---CS-C-BCTTCSEEEEECSBCCHH----H
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e---cc-c-cCCCCcEEEEecCCCChH----H
Confidence 57778776543322111 111355778999999999984 32 2 11 3 388999999999987432 2
Q ss_pred hhHHh-hcCCCcccccccccccc--ccccccccccccCCCCCCCccccCCcCCccceeecCCccccccccccCC-CCCCC
Q 002880 228 EDAIL-QGCPKLEIYNSNFTINF--GEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS-PAEMP 303 (871)
Q Consensus 228 ~~~i~-~~lp~Le~lnl~~t~~~--~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~-~~~l~ 303 (871)
...+. ..+|+|+.|++.+..+. +...+.-.. .+. ....+++|+.|+|++|.|.......+. ...++
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~---------~~l-~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR---------PLF-SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG---------GGS-CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHH---------HHH-hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 23333 47999999988654221 110000000 000 012368999999999999864332221 11589
Q ss_pred CcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchh
Q 002880 304 SLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA 348 (871)
Q Consensus 304 ~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~ 348 (871)
+|+.|+|+.|.|.+.....+...+.++++|+.|+|+.. .+++..
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~ 323 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEM 323 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHH
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHH
Confidence 99999999999987555566666678899999999844 355443
No 159
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.21 E-value=8.7e-06 Score=91.03 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=82.8
Q ss_pred ce-EEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 649 NL-WILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 649 ~~-WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
-. +|+||.+++.|.||.++++.+++.+.++ ..+.+||+||+ |+ ++++-|+... .+ .+.-.+-
T Consensus 180 ~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~-~~---~~~~~~e 247 (372)
T 3tqt_A 180 TSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR------GR--EIECAVLGNG-AP---KASLPGE 247 (372)
T ss_dssp --CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------SE--EEEEEEEESS-SC---EECCCEE
T ss_pred CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC------CE--EEEEEEEeCC-Cc---eEeeeEE
Confidence 45 9999999999999999999888776543 45789999997 54 5555555432 11 1111111
Q ss_pred EEeecCCCCCCCCCccccccceeeeccccCC-CCCCChhhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 002880 723 VRLANNPYSLDKHSFFEYETHFTVMNYGRRF-NHMNTPDFVRGFEAEHQ-VKWLEIHQRVKNTIRSVFEAAAVAHPEMHS 800 (871)
Q Consensus 723 vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~-~~~~~~df~~~~~~~~~-~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~ 800 (871)
+.....-|+ +... |..+. ... ..+ ..-+++.++|.++...++.+.
T Consensus 248 i~~~~~~~d--------~~~k-----y~~g~~~~~-----------~~Pa~l~~~~~~~i~~~a~~~~~aL--------- 294 (372)
T 3tqt_A 248 IIPHHDYYS--------YDAK-----YLDPNGATT-----------TTSVDLSESVTKQIQQIAIDAFKMV--------- 294 (372)
T ss_dssp EECC----------------------------CEE-----------ESCCCCCHHHHHHHHHHHHHHHHHT---------
T ss_pred EecCCCccc--------hhhc-----ccCCCceEE-----------EeCCCCCHHHHHHHHHHHHHHHHHh---------
Confidence 111111111 1111 10000 000 000 001234556666666666543
Q ss_pred CCcEEEEeeeEEEcCCCceEEEEecCCCCCCccccc
Q 002880 801 SKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRACKY 836 (871)
Q Consensus 801 ~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~~~ 836 (871)
+|..+.++||++|.+++||++|||..|++...+-+
T Consensus 295 -g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 295 -HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp -TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred -CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHH
Confidence 24578899999999999999999999999876544
No 160
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.21 E-value=7.9e-07 Score=94.09 Aligned_cols=90 Identities=18% Similarity=0.079 Sum_probs=61.1
Q ss_pred CcccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 600 SCLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 600 ~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
.....|..+.+.++++ |-+ .|+|+.+.+ ++.++.+.+ +-.+|+||..++.|+|+.++++.+++.+..
T Consensus 84 ~~~~dK~~~~~~l~~~-gi~--~p~~~~~~~~~~~~~~~~~~--------~~p~vvKp~~g~~~~gv~~v~~~~el~~~~ 152 (280)
T 1uc8_A 84 EACGDKWATSVALAKA-GLP--QPKTALATDREEALRLMEAF--------GYPVVLKPVIGSWGRLLAXXXXXXXXXXXX 152 (280)
T ss_dssp HHHHBHHHHHHHHHHT-TCC--CCCEEEESSHHHHHHHHHHH--------CSSEEEECSBCCBCSHHHHHHHHHC-----
T ss_pred HHhCCHHHHHHHHHHc-CcC--CCCeEeeCCHHHHHHHHHHh--------CCCEEEEECCCCCcccceecccccccchhh
Confidence 3567888888888765 433 588887654 333444332 237999999999999999887765544322
Q ss_pred ------c---cCCcccccccccccccCCceeeeeEEEE
Q 002880 678 ------E---TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 678 ------~---~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
. ..+++||+||+. ..+++|++++
T Consensus 153 ~~~~~~~~~~~~~~lvqe~i~~------~~~e~~v~v~ 184 (280)
T 1uc8_A 153 XXKEVLGGFQHQLFYIQEYVEK------PGRDIRVFVV 184 (280)
T ss_dssp -------CTTTTCEEEEECCCC------SSCCEEEEEE
T ss_pred hhHhhhcccCCCcEEEEeccCC------CCceEEEEEE
Confidence 2 468999999983 4589999886
No 161
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.20 E-value=1e-05 Score=90.85 Aligned_cols=178 Identities=17% Similarity=0.203 Sum_probs=98.7
Q ss_pred cccHHHHHHHHHhcCCCCcccceeccCC------ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 603 VMKHHLAETVQKAHGSPEWLQPTYNLET------HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 603 t~K~~L~~~l~~~~g~~~~lP~Tf~L~~------el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
..|....+.++++ |-+ .|+++.+.. ++.++...+ +-.+|+||..++.|.|+.++++.+++...
T Consensus 158 ~DK~~~k~~l~~~-GIp--~p~~~~~~~~~~~~~~~~~~~~~l--------g~PvvVKP~~ggss~Gv~~v~~~~el~~a 226 (386)
T 3e5n_A 158 MDKDMAKRVLRDA-RLA--VAPFVCFDRHTAAHADVDTLIAQL--------GLPLFVKPANQGSSVGVSQVRTADAFAAA 226 (386)
T ss_dssp HBHHHHHHHHHHT-TCC--BCCEEEEEHHHHTTCCHHHHHHHH--------CSSEEEEESBSCSSTTCEEECSGGGHHHH
T ss_pred hCHHHHHHHHHHC-CCC--CCCEEEEeCcccchhhHHHHHHhc--------CCCEEEEECCCCcCCCEEEECCHHHHHHH
Confidence 4566666666554 432 455554432 334443332 24689999999999999999998877654
Q ss_pred hc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeecccc
Q 002880 677 ME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGR 751 (871)
Q Consensus 677 ~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~ 751 (871)
.+ ..+.+||+||+ |+ ++++-|+... ...+. ..|-+..... +.++...++...-..
T Consensus 227 ~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~--~~~~~--~~gei~~~~~--------~~d~~~ky~~~~~~~ 286 (386)
T 3e5n_A 227 LALALAYDHKVLVEAAVA------GR--EIECAVLGNA--VPHAS--VCGEVVVHDA--------FYSYATKYISEHGAE 286 (386)
T ss_dssp HHHHTTTCSEEEEEECCC------SE--EEEEEEECSS--SCEEE--EEEEECC-------------------------C
T ss_pred HHHHHhCCCcEEEEcCCC------Ce--EEEEEEEeCC--CceEE--EeEEEEeCCc--------ccchhcccCCCCCeE
Confidence 43 35789999997 53 5555555331 11111 1111111110 111111110000000
Q ss_pred CCCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCC
Q 002880 752 RFNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDC 830 (871)
Q Consensus 752 ~~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l 830 (871)
. ..+. .-.++.++|.+++..++.+. +|..+.++||++|.+++||++|||..|.+
T Consensus 287 ----~-----------~~Pa~l~~~~~~~i~~~a~~~~~aL----------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~ 341 (386)
T 3e5n_A 287 ----I-----------VIPADIDAQTQQRIQQIAVQAYQAL----------GCAGMARVDVFLCADGRIVINEVNTLPGF 341 (386)
T ss_dssp ----E-----------ESSCSSCHHHHHHHHHHHHHHHHHH----------TCCSEEEEEEEECTTCCEEEEEEESSCCC
T ss_pred ----E-----------EECCCCCHHHHHHHHHHHHHHHHHh----------CCccEEEEEEEEECCCcEEEEEeECCCCC
Confidence 0 0000 01234556677776666654 13457899999999999999999999999
Q ss_pred Cccccc
Q 002880 831 TRACKY 836 (871)
Q Consensus 831 ~~~~~~ 836 (871)
...+-+
T Consensus 342 t~~S~~ 347 (386)
T 3e5n_A 342 TRISVY 347 (386)
T ss_dssp STTCHH
T ss_pred CccCHH
Confidence 876544
No 162
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.19 E-value=1.5e-05 Score=86.82 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=80.4
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
+-..|+||..|++|+|+.++++.++....++ ...+++|+||. + ++|+|++|+=. ++ + ++
T Consensus 152 g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VvGg-----~v-~---a~ 215 (309)
T 1i7n_A 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-A------KYDIRVQKIGN-----NY-K---AY 215 (309)
T ss_dssp CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEETT-----EE-E---EE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-C------CceEEEEEECC-----EE-E---EE
Confidence 4588999999999999999999877655443 34567999998 2 59999999832 22 1 35
Q ss_pred EEeec-CCCCCCCCCccccccceeeecccc-CCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 002880 723 VRLAN-NPYSLDKHSFFEYETHFTVMNYGR-RFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHS 800 (871)
Q Consensus 723 vR~a~-~~y~~~~~~l~~~~~HlTn~ny~~-~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~ 800 (871)
.|-+. ..|.. |.+. ..... +. .+..++++. .|....
T Consensus 216 ~Rr~~~g~wrt---------------N~~~~~~e~~-------------~l-----~~e~~~la~----~A~~a~----- 253 (309)
T 1i7n_A 216 MRTSISGNWKT---------------NTGSAMLEQI-------------AM-----SDRYKLWVD----ACSEMF----- 253 (309)
T ss_dssp EEESSCTTTSC---------------SCCCSSEEEE-------------CC-----CHHHHHHHH----HHTTGG-----
T ss_pred EEEcCCCCCee---------------cCCcceeeec-------------CC-----CHHHHHHHH----HHHHHh-----
Confidence 56553 23332 1111 00000 00 011222221 121111
Q ss_pred CCcEEEEeeeEEEcCCCceEEEEecC--CCCCCc
Q 002880 801 SKSRAMYGVDIMLDSSFQPKLLEVTY--CPDCTR 832 (871)
Q Consensus 801 ~~~fel~G~D~mlD~~~kpwLLEVN~--~P~l~~ 832 (871)
....++|+|++.+.+++++++|||. +|.+..
T Consensus 254 -gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~~ 286 (309)
T 1i7n_A 254 -GGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGE 286 (309)
T ss_dssp -GCCSEEEEEEEEETTSCEEEEEEECTTCCCCSS
T ss_pred -CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccc
Confidence 1267899999999999999999999 999973
No 163
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.14 E-value=3.5e-05 Score=86.14 Aligned_cols=183 Identities=14% Similarity=0.168 Sum_probs=101.0
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCC------hhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHH
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETH------LPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIR 675 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~e------l~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~ 675 (871)
...|..+.+.++++ |-| .|+++.+... +.++.... +-.+|+||..++.|+|+.++++.+++..
T Consensus 133 ~~DK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~~~~~--------g~PvvVKP~~~~~s~Gv~~v~~~~el~~ 201 (377)
T 1ehi_A 133 SFDKALTKELLTVN-GIR--NTKYIVVDPESANNWSWDKIVAEL--------GNIVFVKAANQGSSVGISRVTNAEEYTE 201 (377)
T ss_dssp HHSHHHHHHHHHTT-TCC--CCCEEEECTTGGGGCCHHHHHHHH--------CSCEEEEESSCCTTTTEEEECSHHHHHH
T ss_pred HcCHHHHHHHHHHc-CCC--CCCEEEEeccccchHHHHHHHHhc--------CCCEEEEeCCCCCCcCEEEeCCHHHHHH
Confidence 45566666666544 432 4666665432 22332221 2468999999999999999999888776
Q ss_pred Hhc-----cCCcccccccccccccCC-ceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeecc
Q 002880 676 LME-----TGPKICQKYIEFPALFQG-RKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNY 749 (871)
Q Consensus 676 ~~~-----~~~~IvQkYI~~PlLi~g-rKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny 749 (871)
.++ ..+++||+||+ | + ++++-|+... ++ .+. ..+-+.... .+.. ..+.++... |
T Consensus 202 a~~~~~~~~~~vlvEe~I~------G~~--E~~v~vl~~~-~~-~~~--~~~ei~~~~--~~~~-~~~~d~~~k-----~ 261 (377)
T 1ehi_A 202 ALSDSFQYDYKVLIEEAVN------GAR--ELEVGVIGND-QP-LVS--EIGAHTVPN--QGSG-DGWYDYNNK-----F 261 (377)
T ss_dssp HHHHHTTTCSCEEEEECCC------CSC--EEEEEEEESS-SC-EEE--EEEEEECTT--SSSS-SCCCCHHHH-----T
T ss_pred HHHHHHhcCCcEEEEcCCC------CCc--eEEEEEEcCC-Cc-EEE--eeEEEEecC--CCCc-CceeCHHhc-----c
Confidence 543 35789999997 4 3 5666666432 11 111 111111110 0000 001111111 1
Q ss_pred ccCCCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCC
Q 002880 750 GRRFNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCP 828 (871)
Q Consensus 750 ~~~~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P 828 (871)
..+. .... ..+. .-+++.++|.+++..++.+. ++....++||++|.+++||+||||..|
T Consensus 262 ~~g~---~~~~-------~~Pa~l~~~~~~~i~~~a~~~~~al----------g~~G~~~vD~~~~~~g~~~vlEiN~rp 321 (377)
T 1ehi_A 262 VDNS---AVHF-------QIPAQLSPEVTKEVKQMALDAYKVL----------NLRGEARMDFLLDENNVPYLGEPNTLP 321 (377)
T ss_dssp TCCT---TCEE-------ESSCCCCHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEECTTCCEEEEEEESSC
T ss_pred cCCC---CeeE-------EeCCCCCHHHHHHHHHHHHHHHHHc----------CCCcEEEEEEEEeCCCCEEEEEEeCCC
Confidence 1000 0000 0000 01234555666666555542 244789999999999999999999999
Q ss_pred CCCcccc
Q 002880 829 DCTRACK 835 (871)
Q Consensus 829 ~l~~~~~ 835 (871)
++...+-
T Consensus 322 g~t~~s~ 328 (377)
T 1ehi_A 322 GFTNMSL 328 (377)
T ss_dssp CCSTTCG
T ss_pred CCCcccH
Confidence 9876543
No 164
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.13 E-value=5.9e-06 Score=89.84 Aligned_cols=98 Identities=14% Similarity=0.263 Sum_probs=65.9
Q ss_pred EEccccCCCcccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCC---CcEEE
Q 002880 592 YVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMART---IDTSV 666 (871)
Q Consensus 592 ~vN~fP~~~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG---~GI~v 666 (871)
.+|..........|....+.+++. |- -.|+|+.+.+ ++.++++ ..+.+-.+|+||..|+.| .|+.+
T Consensus 86 ~~~~~~~~~~~~dK~~~~~~l~~~-gi--~~P~~~~~~~~~~~~~~~~------~~~~~~P~vvKP~~g~g~~~s~gv~~ 156 (324)
T 1z2n_X 86 FLESSAIHDMMSSREEINALLIKN-NI--PIPNSFSVKSKEEVIQLLQ------SKQLILPFIVKPENAQGTFNAHQMKI 156 (324)
T ss_dssp EETCHHHHHHHTBHHHHHHHHHHT-TC--CCSCEEEESSHHHHHHHHH------TTCSCSSEEEEESBCSSSSGGGEEEE
T ss_pred EeCCHHHHHHHhCHHHHHHHHHHC-CC--CCCCEEEeCCHHHHHHHHH------HcCCCCCEEEeeCCCCCCccceeeEE
Confidence 445433334566788888888765 43 3688887754 2223222 112234799999999888 99999
Q ss_pred ecChHHHHHHhccCCcccccccccccccCCceeeeeEEEE
Q 002880 667 TDDLSAVIRLMETGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 667 ~~~l~~i~~~~~~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
+.+.+++... ..++++|+||+. .| +|+|++|+
T Consensus 157 v~~~~~l~~~--~~~~lvqe~i~~----~g--~~~~v~v~ 188 (324)
T 1z2n_X 157 VLEQEGIDDI--HFPCLCQHYINH----NN--KIVKVFCI 188 (324)
T ss_dssp ECSGGGGTTC--CSSEEEEECCCC----TT--CEEEEEEE
T ss_pred EeCHHHHhhc--CCCEEEEEccCC----CC--cEEEEEEE
Confidence 9987765432 568999999974 23 79999886
No 165
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.11 E-value=2.1e-05 Score=84.72 Aligned_cols=172 Identities=18% Similarity=0.274 Sum_probs=93.5
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhH-HHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQ-LIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~-f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
...|..+.+.++++ |-+ .|+|+.+.+ ++.. +...+ +-.+|+||..++.|+|+.++++.+++....+
T Consensus 95 ~~dK~~~~~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~~--------~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~ 163 (307)
T 3r5x_A 95 CMDKNISKKILRYE-GIE--TPDWIELTKMEDLNFDELDKL--------GFPLVVKPNSGGSSVGVKIVYDKDELISMLE 163 (307)
T ss_dssp HHCHHHHHHHHHHT-TCC--CCCEEEEESSSCCCHHHHHHH--------CSSEEEEECC----CCCEEECSHHHHHHHHH
T ss_pred HcCHHHHHHHHHHC-CCC--CCCEEEEeChhhhhHHHHHhc--------CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHH
Confidence 45677777777654 432 566665532 3332 43332 2468999999999999999999887765443
Q ss_pred -----cCCcccccccccccccCCceeeeeEEEEEee-ecCcEEEEEcceEEEeecCCCCCCCCCccccccce-eeecccc
Q 002880 679 -----TGPKICQKYIEFPALFQGRKFDLRYIVLVRS-MDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHF-TVMNYGR 751 (871)
Q Consensus 679 -----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS-~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~Hl-Tn~ny~~ 751 (871)
..+++||+||+ |+ ++++.|+ .. .-|.. .+.+... +.++...+ +...
T Consensus 164 ~~~~~~~~~lvee~i~------G~--e~~v~v~-~g~~~~~~--------~~~~~~~-------~~~~~~~~~~~g~--- 216 (307)
T 3r5x_A 164 TVFEWDSEVVIEKYIK------GE--EITCSIF-DGKQLPII--------SIRHAAE-------FFDYNAKYDDAST--- 216 (307)
T ss_dssp HHHHHCSEEEEEECCC------SE--EEEEEEE-TTEECCCE--------EEEEEEE-------EETTEEEEEEEEE---
T ss_pred HHHhcCCCEEEECCcC------CE--EEEEEEE-CCEEeeEE--------EEEcCCc-------ccChhhcCCCCCC---
Confidence 46899999998 53 6777663 21 11110 0111110 00111111 1000
Q ss_pred CCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 752 RFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 752 ~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
...... . -+.+.++|.++...++.+. ++....++||++| +++||+||||..|++.
T Consensus 217 ~~~p~~-------------l-~~~~~~~i~~~a~~~~~~l----------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~~ 271 (307)
T 3r5x_A 217 IEEVIE-------------L-PAELKERVNKASLACYKAL----------KCSVYARVDMMVK-DGIPYVMEVNTLPGMT 271 (307)
T ss_dssp EEEECC-------------C-CHHHHHHHHHHHHHHHHHT----------TCCSEEEEEEEEE-TTEEEEEEEESSCCCS
T ss_pred eEecCC-------------C-CHHHHHHHHHHHHHHHHHh----------CCCceEEEEEEEE-CCeEEEEEEcCCCCCC
Confidence 000000 0 0123344555555554432 1234678999999 6999999999999987
Q ss_pred ccccc
Q 002880 832 RACKY 836 (871)
Q Consensus 832 ~~~~~ 836 (871)
..+-+
T Consensus 272 ~~s~~ 276 (307)
T 3r5x_A 272 QASLL 276 (307)
T ss_dssp TTSHH
T ss_pred ccCHH
Confidence 65443
No 166
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.10 E-value=1.4e-05 Score=86.87 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=92.3
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh---
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM--- 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~--- 677 (871)
....|..+.+.++++ |-+ .|+| +. +..+ ....+|+||..++.|+|+.++++.+++....
T Consensus 97 ~~~dK~~~~~~l~~~-gip--~p~~--~~-~~~~------------l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~ 158 (334)
T 2r85_A 97 WESDRNLERKWLKKA-GIR--VPEV--YE-DPDD------------IEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKF 158 (334)
T ss_dssp HHHSHHHHHHHHHHT-TCC--CCCB--CS-CGGG------------CCSCEEEEECC----TTCEEESSHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHc-CCC--CCCc--cC-ChHH------------cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH
Confidence 356777777777665 432 4555 22 1111 1257899999999999999999988766543
Q ss_pred -------ccCCcccccccccccccCCceeeeeEEEEEeeecC-cEEEEE-------cceEEEee-cCCCCCCCCCccccc
Q 002880 678 -------ETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDP-LEIFLS-------DVFWVRLA-NNPYSLDKHSFFEYE 741 (871)
Q Consensus 678 -------~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~P-L~vy~y-------~~g~vR~a-~~~y~~~~~~l~~~~ 741 (871)
...+++||+||+ |..+++.+++-+ +.- .+++.+ ..|..|.. .+.+..+. .
T Consensus 159 ~~~~~~~~~~~~lvee~i~------G~e~~~~~~~~~--~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 224 (334)
T 2r85_A 159 LGIKRKEDLKNIQIQEYVL------GVPVYPHYFYSK--VREELELMSIDRRYESNVDAIGRIPAKDQLEFDM------D 224 (334)
T ss_dssp HCCCSGGGCCSEEEEECCC------CEEEEEEEEEET--TTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCC------C
T ss_pred HhhcccCCCCcEEEEeccC------CceeEEEEeecC--cCceeeeeeeccEEEeccCccccccccccccccc------C
Confidence 126899999998 556653322110 000 122222 22222211 11111100 0
Q ss_pred cceeee-ccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceE
Q 002880 742 THFTVM-NYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPK 820 (871)
Q Consensus 742 ~HlTn~-ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpw 820 (871)
...+.+ ++. . ... +.+.+++.+++..++.+..... ..+...+++||++|.+++||
T Consensus 225 ~~~~~~g~~p--~-~l~----------------~~~~~~i~~~a~~~~~~l~~~~-----~~~~G~~~vd~~~~~~g~~~ 280 (334)
T 2r85_A 225 ITYTVIGNIP--I-VLR----------------ESLLMDVIEAGERVVKAAEELM-----GGLWGPFCLEGVFTPDLEFV 280 (334)
T ss_dssp CCEEEEEEEE--C-CCC----------------GGGHHHHHHHHHHHHHHHHHHS-----SCCCEEEEEEEEECTTSCEE
T ss_pred CceeeeCCCC--c-ccC----------------HHHHHHHHHHHHHHHHHHHhhc-----ccccccEEEEEEECCCCCEE
Confidence 000000 000 0 000 1233455666666666553221 13578899999999999999
Q ss_pred EEEecCCCCCC
Q 002880 821 LLEVTYCPDCT 831 (871)
Q Consensus 821 LLEVN~~P~l~ 831 (871)
+||||..|...
T Consensus 281 viEiN~R~g~~ 291 (334)
T 2r85_A 281 VFEISARIVAG 291 (334)
T ss_dssp EEEEECSCCGG
T ss_pred EEEEeCCcCCC
Confidence 99999999874
No 167
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.08 E-value=1.9e-05 Score=87.99 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=96.2
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCC-CCCcEEEecChHHHHHHhcc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMA-RTIDTSVTDDLSAVIRLMET 679 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~s-rG~GI~v~~~l~~i~~~~~~ 679 (871)
....|..+.+.++++ |-+ .|++..+.+ ..++++. .+-.+|+||..++ .|+|+.++++.+++....+
T Consensus 97 ~~~dK~~~~~~l~~~-gip--~p~~~~~~~-~~~~~~~--------~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~- 163 (380)
T 3ax6_A 97 IIQDKFVQKEFLKKN-GIP--VPEYKLVKD-LESDVRE--------FGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK- 163 (380)
T ss_dssp HHHSHHHHHHHHHHT-TCC--CCCEEECSS-HHHHHHT--------TCSSEEEEESCCC-----EEEECSGGGGGGCCC-
T ss_pred HhcCHHHHHHHHHHc-CCC--CCCeEEeCC-HHHHHHh--------cCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc-
Confidence 467788888877765 433 466665543 2223221 2347999999999 9999999999888766554
Q ss_pred CCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCC-CCCCCCccccccceeeeccccCCCCCCC
Q 002880 680 GPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPY-SLDKHSFFEYETHFTVMNYGRRFNHMNT 758 (871)
Q Consensus 680 ~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y-~~~~~~l~~~~~HlTn~ny~~~~~~~~~ 758 (871)
.+++||+||+. | .++++.++...-.-..++- . ...+ .... ..+..+++ . .
T Consensus 164 ~~~lvEe~i~~-----g--~e~sv~~~~~~~G~~~~~~----~----~~~~~~~~~---~~~~~~~~-----p----~-- 214 (380)
T 3ax6_A 164 GETYLEEFVEI-----E--KELAVMVARNEKGEIACYP----V----VEMYFDEDA---NICDTVIA-----P----A-- 214 (380)
T ss_dssp SSEEEEECCCE-----E--EEEEEEEEECSSCCEEEEE----E----EEEC-----------CEEEE-----S----C--
T ss_pred CCEEEEeccCC-----C--eeEEEEEEECCCCCEEEEC----C----eeeeecccC---CeeEEEEC-----C----C--
Confidence 78999999983 2 4777777653110111110 0 0011 0000 00000000 0 0
Q ss_pred hhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCc
Q 002880 759 PDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTR 832 (871)
Q Consensus 759 ~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~ 832 (871)
. .-+++.+++.+++..++.+. ++...+++||++|.+++||+||||..|....
T Consensus 215 -----------~-l~~~~~~~~~~~a~~~~~~l----------g~~G~~~vd~~~~~~g~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 215 -----------R-IEEKYSKIAREIATSVVEAL----------EGVGIFGIEMFLTKQGEILVNEIAPRPHNSG 266 (380)
T ss_dssp -----------S-SCHHHHHHHHHHHHHHHHHH----------TCCEEEEEEEEEETTSCEEEEEEESSCCGGG
T ss_pred -----------C-CCHHHHHHHHHHHHHHHHHC----------CCeEEEEEEEEEeCCCcEEEEEecCCCCCCc
Confidence 0 01234455666666555554 1347899999999999999999999998643
No 168
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.04 E-value=1.8e-05 Score=88.86 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=91.5
Q ss_pred cccHHHHHHHHHhcC-CCCcccceeccCCC--hhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 603 VMKHHLAETVQKAHG-SPEWLQPTYNLETH--LPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 603 t~K~~L~~~l~~~~g-~~~~lP~Tf~L~~e--l~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
..|....+.++++ | -+ .|+++.+... ..+.+..+. ...+-.+|+||.+++.|.|+.++++.+++.+.++
T Consensus 160 ~DK~~~k~~l~~~-G~Ip--vp~~~~~~~~~~~~~~~~~~~----~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~ 232 (383)
T 3k3p_A 160 MDKITTNQVLESA-TTIP--QVAYVALIEGEPLESKLAEVE----EKLIYPVFVKPANMGSSVGISKAENRTDLKQAIAL 232 (383)
T ss_dssp HCHHHHHHHHHHH-CCCC--BCCEEEEETTSCHHHHHHHHH----HHCCSSEEEEECC------CEEESSHHHHHHHHHH
T ss_pred hCHHHHHHHHHhC-CCcC--CCCEEEEeCccchhHHHHHHH----HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHH
Confidence 3666666666655 3 32 4566655431 111111111 1123569999999999999999999888765443
Q ss_pred ----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCC
Q 002880 679 ----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFN 754 (871)
Q Consensus 679 ----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~ 754 (871)
...++||+||+ |+ ++++-|+.. ....++ --+-+.... .+.++... |..+..
T Consensus 233 a~~~~~~vlVEe~I~------G~--E~~v~vl~d--~~~~~~--~~~ei~~~~--------~~~d~~~k-----y~~g~~ 287 (383)
T 3k3p_A 233 ALKYDSRVLIEQGVD------AR--EIEVGILGN--TDVKTT--LPGEIVKDV--------AFYDYEAK-----YIDNKI 287 (383)
T ss_dssp HHHHCSEEEEEECCC------SE--EEEEEEEES--SSCEEC--CCEEEC------------------------------
T ss_pred HHhCCCeEEEEcCCC------Ce--EEEEEEEeC--CCeeEE--eeEEEecCC--------Cccchhhc-----ccCCCe
Confidence 46799999997 55 555555532 111111 001110000 01111111 100000
Q ss_pred CCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCcc
Q 002880 755 HMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRA 833 (871)
Q Consensus 755 ~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~ 833 (871)
.. ..+. .-+++.++|.++...++.+. +|....++||++|.+++||++|||..|.+...
T Consensus 288 ~~-----------~~Pa~l~~~~~~~i~~~a~~~~~aL----------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~ 346 (383)
T 3k3p_A 288 TM-----------AIPAEIDPVIVEKMRDYAATAFRTL----------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQW 346 (383)
T ss_dssp CE-----------ESSCCCCHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--
T ss_pred eE-----------EecCCCCHHHHHHHHHHHHHHHHHc----------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcc
Confidence 00 0000 01234556666666555543 24578899999999999999999999999876
Q ss_pred ccc
Q 002880 834 CKY 836 (871)
Q Consensus 834 ~~~ 836 (871)
+-+
T Consensus 347 S~~ 349 (383)
T 3k3p_A 347 SMY 349 (383)
T ss_dssp CHH
T ss_pred cHH
Confidence 544
No 169
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.03 E-value=1.9e-05 Score=86.99 Aligned_cols=171 Identities=11% Similarity=0.135 Sum_probs=99.3
Q ss_pred EEccccCCCccccc----HHHHHHHHHhcCCC--CcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEE
Q 002880 592 YVNQFPFESCLVMK----HHLAETVQKAHGSP--EWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTS 665 (871)
Q Consensus 592 ~vN~fP~~~~lt~K----~~L~~~l~~~~g~~--~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~ 665 (871)
.+|-.-.......| ..+...+++. |.. +..|.|+. +. ..+++ ...+-..|+||..|++|+|+.
T Consensus 118 viN~~~sI~~~~DK~~v~~~~l~~l~~~-gi~~~P~~~~t~~-~~-~~~~~--------~~~g~PvVvK~~~Gs~G~GV~ 186 (344)
T 2p0a_A 118 AVNSLYSVYNFCSKPWVFSQLIKIFHSL-GPEKFPLVEQTFF-PN-HKPMV--------TAPHFPVVVKLGHAHAGMGKI 186 (344)
T ss_dssp EESCHHHHHHTTCHHHHHHHHHHHHHHH-CTTTSCBCCCEEE-SS-STTCC--------CCSSSSEEEEESSCCTTTTEE
T ss_pred ecCCHHHHHhhCCchHHHHHHHHHHHHC-CCCCCCCCCEEec-Cc-hhhhh--------hccCCCEEEEeCCCCceeCeE
Confidence 45554444445566 3344444444 321 34566664 32 22221 123357899999999999999
Q ss_pred EecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEee-cCCCCCCCCCccc
Q 002880 666 VTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLA-NNPYSLDKHSFFE 739 (871)
Q Consensus 666 v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a-~~~y~~~~~~l~~ 739 (871)
++++.+++...++ ...+++|+||. + ++|+|++|+=. ++ + ++.|-+ ...|..+
T Consensus 187 lve~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VVGg-----~v-v---a~~R~~~~g~wrtN------ 244 (344)
T 2p0a_A 187 KVENQLDFQDITSVVAMAKTYATTEAFID-S------KYDIRIQKIGS-----NY-K---AYMRTSISGNWKAN------ 244 (344)
T ss_dssp EECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEETT-----EE-E---EEEEEESSSCSSTT------
T ss_pred EECCHHHHHHHHHHHhccCCeEEEEeccC-C------CccEEEEEECC-----EE-E---EEEEecCCCCCeec------
Confidence 9999877664332 34567999998 2 59999999832 22 2 356665 3334331
Q ss_pred cccceeeecccc-CCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCc
Q 002880 740 YETHFTVMNYGR-RFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQ 818 (871)
Q Consensus 740 ~~~HlTn~ny~~-~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~k 818 (871)
.+. ..... .. .+..++++. .|.... ....++|+|++.+.+++
T Consensus 245 ---------~~~~~~e~~-------------~l-----~~e~~~la~----~Aa~a~------gGldi~GVDll~~~~G~ 287 (344)
T 2p0a_A 245 ---------TGSAMLEQV-------------AM-----TERYRLWVD----SCSEMF------GGLDICAVKAVHSKDGR 287 (344)
T ss_dssp ---------SSSEEEEEE-------------CC-----CHHHHHHHH----HHTTGG------GCCSEEEEEEEEETTSC
T ss_pred ---------CCceEEEee-------------CC-----CHHHHHHHH----HHHHHh------CCCCEEEEEEEEcCCCC
Confidence 110 00000 00 111222222 121111 12678999999999999
Q ss_pred eEEEEecC--CCCCCc
Q 002880 819 PKLLEVTY--CPDCTR 832 (871)
Q Consensus 819 pwLLEVN~--~P~l~~ 832 (871)
++++|||. +|.+..
T Consensus 288 ~~VlEVN~~~~P~~~~ 303 (344)
T 2p0a_A 288 DYIIEVMDSSMPLIGE 303 (344)
T ss_dssp EEEEEEECTTCCCCGG
T ss_pred EEEEEEcCCCCCcccc
Confidence 99999999 999974
No 170
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.02 E-value=8.8e-05 Score=82.99 Aligned_cols=165 Identities=12% Similarity=0.108 Sum_probs=93.9
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCC-CCcEEEecChHHHHHHh-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMAR-TIDTSVTDDLSAVIRLM- 677 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~sr-G~GI~v~~~l~~i~~~~- 677 (871)
...|..+.+.++++ |-+ .|+++.+.+ ++.++.+.+ +-.+|+||..+.. |+|+.++++.+++.+..
T Consensus 110 ~~dK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~--------g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~ 178 (389)
T 3q2o_A 110 TQNRFTEKNAIEKA-GLP--VATYRLVQNQEQLTEAIAEL--------SYPSVLKTTTGGYDGKGQVVLRSEADVDEARK 178 (389)
T ss_dssp TTSHHHHHHHHHHT-TCC--CCCEEEESSHHHHHHHHHHH--------CSSEEEEESSCCSSSCCEEEESSGGGHHHHHH
T ss_pred hcCHHHHHHHHHHC-CCC--CCCeEEECCHHHHHHHHHhc--------CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHH
Confidence 45677777777654 422 455665543 344444333 2468999999865 89999999887766543
Q ss_pred --ccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeec--CCCCCCCCCccccccceeeeccccCC
Q 002880 678 --ETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLAN--NPYSLDKHSFFEYETHFTVMNYGRRF 753 (871)
Q Consensus 678 --~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~--~~y~~~~~~l~~~~~HlTn~ny~~~~ 753 (871)
..++++||+||+. ..++++.++... +|-+++.. +...... . +..++ . ..
T Consensus 179 ~~~~~~~lvEe~i~g-------~~E~~v~~~~~~----------~G~~~~~~~~e~~~~~g--~--~~~~~-----~-p~ 231 (389)
T 3q2o_A 179 LANAAECILEKWVPF-------EKEVSVIVIRSV----------SGETKVFPVAENIHVNN--I--LHESI-----V-PA 231 (389)
T ss_dssp HHHHSCEEEEECCCC-------SEEEEEEEEECT----------TCCEEECCCEEEEEETT--E--EEEEE-----E-SC
T ss_pred hcCCCCEEEEecccC-------ceEEEEEEEEcC----------CCCEEEecCeeeEEcCC--c--eEEEE-----C-CC
Confidence 3578999999982 135555555431 11111100 0000000 0 00000 0 00
Q ss_pred CCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 754 NHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 754 ~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
.. -..+.+++.++...+..+. ++...+++||++|.+++||++|||..|+..
T Consensus 232 -~l----------------~~~~~~~~~~~a~~~~~~l----------g~~G~~~ve~~~~~dg~~~viEiNpR~~~s 282 (389)
T 3q2o_A 232 -RI----------------TEELSQKAIAYAKVLADEL----------ELVGTLAVEMFATADGEIYINELAPRPHNS 282 (389)
T ss_dssp -SS----------------CHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEECTTSCEEEEEEESSCCGG
T ss_pred -CC----------------CHHHHHHHHHHHHHHHHHc----------CCeeEEEEEEEEeCCCCEEEEEeeCCCCCc
Confidence 00 0223445555555444432 235789999999999999999999999754
No 171
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.00 E-value=1.9e-05 Score=86.34 Aligned_cols=175 Identities=19% Similarity=0.198 Sum_probs=96.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc---
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME--- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~--- 678 (871)
...|..+.+.++++ |-+ .|+++.+.+.-.+. . ..+-.+|+||..++.|.|+.++++.+++....+
T Consensus 116 ~~dK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~--------~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~ 183 (322)
T 2fb9_A 116 CMDKDLSKRVLAQA-GVP--VVPWVAVRKGEPPV--------V-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAF 183 (322)
T ss_dssp HHCHHHHHHHHHHT-TCC--CCCEEEEETTSCCC--------C-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHC-CCC--CCCEEEEECchhhh--------h-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH
Confidence 45666666666654 432 46666553211110 0 123479999999999999999999888776543
Q ss_pred --cCCcccccccccccccCC-ceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCCC
Q 002880 679 --TGPKICQKYIEFPALFQG-RKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNH 755 (871)
Q Consensus 679 --~~~~IvQkYI~~PlLi~g-rKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~ 755 (871)
..+++||+||+ | + ++++.|+... ++ ++. ..|-+.....-|+ +...++. .-......
T Consensus 184 ~~~~~vlvEe~I~------G~~--E~~v~vl~~~-~~-~~~--~~~ei~~~~~~~~--------~~~k~~~-g~~~~~~P 242 (322)
T 2fb9_A 184 RYDEKAVVEKALS------PVR--ELEVGVLGNV-FG-EAS--PVGEVRYEAPFYD--------YETKYTP-GRAELLIP 242 (322)
T ss_dssp TTCSEEEEEECCS------SCE--EEEEEEESSS-SC-EEE--EEEEEEEECCEEE--------TTTEEEC-CEEEEESS
T ss_pred hcCCeEEEEeCCC------CCe--eEEEEEEeCC-Cc-eEe--eeEEEeeCCCccC--------HHHcccC-CCeEEEeC
Confidence 46789999997 4 4 5566555321 11 110 0111111111111 1111100 00000000
Q ss_pred CCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCccc
Q 002880 756 MNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTRAC 834 (871)
Q Consensus 756 ~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~~~ 834 (871)
.. . -+++.++++++...++.+. ++....++||++| +++||++|||..|++...+
T Consensus 243 a~-------------l-~~~~~~~i~~~a~~~~~al----------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 243 AP-------------L-DPGTQETVQELALKAYKVL----------GVRGMARVDFFLA-EGELYLNELNTIPGFTPTS 296 (322)
T ss_dssp CC-------------C-CTTHHHHHHHHHHHHHHHH----------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSC
T ss_pred CC-------------C-CHHHHHHHHHHHHHHHHHh----------CCceEEEEEEEEE-CCcEEEEEEECCCCCCccc
Confidence 00 0 0123445666666665554 1346789999999 9999999999999987544
No 172
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.00 E-value=2.4e-05 Score=87.91 Aligned_cols=126 Identities=11% Similarity=0.154 Sum_probs=80.8
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceE
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFW 722 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~ 722 (871)
+-..|+||..|++|+|+.++++.+++...++ ...+++|+||. + ++|||++|+=. ++ + ++
T Consensus 264 g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~------g~DIRv~VVGg-----~v-v---a~ 327 (422)
T 1pk8_A 264 TYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-A------KYDVRVQKIGQ-----NY-K---AY 327 (422)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-E------EEEEEEEEETT-----EE-E---EE
T ss_pred CCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-C------CceEEEEEECC-----EE-E---EE
Confidence 3578999999999999999999877665443 34566999998 2 59999999832 22 2 45
Q ss_pred EEeec-CCCCCCCCCccccccceeeecccc-CCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 002880 723 VRLAN-NPYSLDKHSFFEYETHFTVMNYGR-RFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHS 800 (871)
Q Consensus 723 vR~a~-~~y~~~~~~l~~~~~HlTn~ny~~-~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~ 800 (871)
.|.+. ..|..+ .+. ..... .. .+..++++. .|....
T Consensus 328 ~Rr~~~g~WrtN---------------vg~g~~e~i-------------~l-----t~e~~elA~----kAaka~----- 365 (422)
T 1pk8_A 328 MRTSVSGNWKTN---------------TGSAMLEQI-------------AM-----SDRYKLWVD----TCSEIF----- 365 (422)
T ss_dssp EEEESSSCSSTT---------------SSCEEEEEE-------------CC-----CHHHHHHHH----HHTTGG-----
T ss_pred EEEcCCCCceec---------------cCceeeeee-------------CC-----CHHHHHHHH----HHHHHh-----
Confidence 66653 333331 110 00000 00 111222222 121111
Q ss_pred CCcEEEEeeeEEEcCCCceEEEEecC--CCCCCc
Q 002880 801 SKSRAMYGVDIMLDSSFQPKLLEVTY--CPDCTR 832 (871)
Q Consensus 801 ~~~fel~G~D~mlD~~~kpwLLEVN~--~P~l~~ 832 (871)
....++|+|++.+.++++++||||. +|.+..
T Consensus 366 -gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g 398 (422)
T 1pk8_A 366 -GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGD 398 (422)
T ss_dssp -GCCSEEEEEEEEETTSCEEEEEEECTTCCCCTT
T ss_pred -CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccc
Confidence 1267899999999999999999999 999974
No 173
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.98 E-value=8.1e-05 Score=83.42 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=55.8
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|..+.+.++++ |-+ .|+++.+.+ ++.++.+. .+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 106 ~~~dK~~~~~~l~~~-gip--~p~~~~~~~~~~~~~~~~~--------~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~ 174 (403)
T 4dim_A 106 MCGDKYKMKEAFKKY-NVN--TARHFVVRNENELKNALEN--------LKLPVIVKATDLQGSKGIYIAKKEEEAIDGFN 174 (403)
T ss_dssp HHHCHHHHHHHHHHH-TCC--CCCEECCCSHHHHHHHHHT--------SCSSEEEECSCC-----CEEESSHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHc-CCC--CCCEEEeCCHHHHHHHHhc--------CCCCEEEEECCCCCCCCEEEECCHHHHHHHHH
Confidence 356777777777665 422 566665543 23333322 23569999999999999999999888765443
Q ss_pred -------cCCcccccccccccccCCceeeeeEEE
Q 002880 679 -------TGPKICQKYIEFPALFQGRKFDLRYIV 705 (871)
Q Consensus 679 -------~~~~IvQkYI~~PlLi~grKFDlR~yV 705 (871)
.++++||+||+ |.-|++++++
T Consensus 175 ~~~~~~~~~~~lvEe~i~------g~e~sv~~~~ 202 (403)
T 4dim_A 175 ETMNLTKRDYCIVEEFIE------GYEFGAQAFV 202 (403)
T ss_dssp HHHHHCSSSCCEEEECCC------SEEEEEEEEE
T ss_pred HHHhcCcCCcEEEEEccC------CcEEEEEEEE
Confidence 36799999998 5667777653
No 174
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.91 E-value=0.00015 Score=82.02 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=51.1
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc---
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME--- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~--- 678 (871)
...|..+.+.++++ |-| .|.++.+.+. .+.. ....+-.+|+||..++.|+|+.++++.+++....+
T Consensus 110 ~~dK~~~k~~l~~~-gip--~p~~~~~~~~-~~~~-------~~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~ 178 (425)
T 3vot_A 110 CRNKNKTRSILQQN-GLN--TPVFHEFHTL-ADLE-------NRKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVE 178 (425)
T ss_dssp HHCHHHHHHHHHHT-TCC--CCCEEEESSG-GGGT-------TCCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHC-CCC--CCceeccCcH-HHHH-------HhhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHH
Confidence 45677777777664 433 4666655432 2211 11233468999999999999999999887765332
Q ss_pred -------------cCCcccccccccccccCCceeeeeE
Q 002880 679 -------------TGPKICQKYIEFPALFQGRKFDLRY 703 (871)
Q Consensus 679 -------------~~~~IvQkYI~~PlLi~grKFDlR~ 703 (871)
..++++|+||+ |+-|.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~lvEe~i~------G~e~sv~~ 210 (425)
T 3vot_A 179 AVNQRDLNRFVHGKTGIVAEQFID------GPEFAIET 210 (425)
T ss_dssp HHTTSSHHHHHTTCCCEEEEECCC------SCEEEEEE
T ss_pred hhhhhhhhhhccCCCcEEEEEEec------CcEEEEEE
Confidence 35689999997 55565544
No 175
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.89 E-value=0.00015 Score=81.76 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=59.8
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|..+.+.++++ |-| .|+++.+.+ ++.++.+.+ +-.+|+||..++.|+|+.++++.+++....+
T Consensus 98 ~~~dK~~~~~~l~~~-gip--~p~~~~~~~~~~~~~~~~~~--------~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~ 166 (417)
T 2ip4_A 98 IEGSKAFAKGLMERY-GIP--TARYRVFREPLEALAYLEEV--------GVPVVVKDSGLAAGKGVTVAFDLHQAKQAVA 166 (417)
T ss_dssp HHHCHHHHHHHHHHT-CCC--BCCEEEESSHHHHHHHHHHH--------CSSEEEECTTSCSSTTCEEESCHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHc-CCC--CCCeeeeCCHHHHHHHHHHc--------CCCEEEEECCCCCCCCEEEeCCHHHHHHHHH
Confidence 345788777777765 433 366665543 333443322 2479999999999999999999887765432
Q ss_pred -------cCCcccccccccccccCCceeeeeEEEEE
Q 002880 679 -------TGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 679 -------~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
..+++||+||+- + ++++.++.
T Consensus 167 ~~~~~~~~~~~lvEe~i~g------~--E~sv~~~~ 194 (417)
T 2ip4_A 167 NILNRAEGGEVVVEEYLEG------E--EATVLALT 194 (417)
T ss_dssp HHTTSSSCCCEEEEECCCS------C--EEEEEEEE
T ss_pred HHHhhccCCeEEEEECccC------c--EEEEEEEE
Confidence 157999999973 3 66766664
No 176
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=97.87 E-value=0.0001 Score=83.17 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccC--C--ChhHHHhhhhhhhccCCCceEEecCCCCC-CCCcEEEecChHHHHHH
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLE--T--HLPQLIGDYYVRKRDGLNNLWILKPWNMA-RTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~--~--el~~f~~~~~~~~~~~~~~~WIvKP~~~s-rG~GI~v~~~l~~i~~~ 676 (871)
...|....+.++++ |-| .|+++.+. + ++.++.+.+ +-.+|+||..++ .|+|+.++++.+++...
T Consensus 121 ~~dK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~~~--------g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a 189 (403)
T 3k5i_A 121 IQNKFNQKEHLRKY-GIP--MAEHRELVENTPAELAKVGEQL--------GYPLMLKSKTMAYDGRGNFRVNSQDDIPEA 189 (403)
T ss_dssp HTSHHHHHHHHHTT-TCC--BCCEEEESSCCHHHHHHHHHHH--------CSSEEEEESSSCCTTTTEEEECSTTSHHHH
T ss_pred hcCHHHHHHHHHHC-CcC--CCCEEEEcCCCHHHHHHHHHHh--------CCCEEEEeCCCCcCCCCEEEECCHHHHHHH
Confidence 45666666666654 422 45565554 2 333333332 246899998886 99999999987766554
Q ss_pred h---ccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCC
Q 002880 677 M---ETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRF 753 (871)
Q Consensus 677 ~---~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~ 753 (871)
. ..+++|||+||+. ..++.+.++... +. +.+|...-.. ..+ +.....+. ..
T Consensus 190 ~~~~~~~~~lvEe~i~~-------~~E~sv~v~~~~-~g--~~~~p~~~~~------~~~---------g~~~~~~~-Pa 243 (403)
T 3k5i_A 190 LEALKDRPLYAEKWAYF-------KMELAVIVVKTK-DE--VLSYPTVETV------QED---------SICKLVYA-PA 243 (403)
T ss_dssp HHHTTTSCEEEEECCCE-------EEEEEEEEEECS-SC--EEECCCEEEE------EET---------TEEEEEEE-SC
T ss_pred HHhcCCCcEEEecCCCC-------CeEEEEEEEEcC-CC--EEEeCCeeeE------EeC---------CEEEEEEe-CC
Confidence 3 3578999999972 135666555431 11 1111110000 000 00000000 00
Q ss_pred CCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 754 NHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 754 ~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
... -.++.+++.++...++.+. ++..++++||+++.+++||++|||..|.-.
T Consensus 244 ~~l----------------~~~~~~~~~~~a~~i~~~L----------g~~G~~~ve~~~~~dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 244 RNV----------------SDAINQKAQELARKAVAAF----------DGKGVFGVEMFLLEDDSIMLCEIASRIHNS 295 (403)
T ss_dssp SSC----------------CHHHHHHHHHHHHHHHHTS----------CCSEEEEEEEEEETTSCEEEEEEESSCCGG
T ss_pred CCC----------------CHHHHHHHHHHHHHHHHHc----------CCeeEEEEEEEEeCCCcEEEEEeecCCCCC
Confidence 000 1233444555554444322 246789999999999999999999999864
No 177
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.83 E-value=0.00023 Score=81.17 Aligned_cols=169 Identities=16% Similarity=0.130 Sum_probs=95.5
Q ss_pred cccccHHHHHHHHHhcCCCCccccee--ccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY--NLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf--~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
....|..+.+.++++ |-| .|+++ .+.+ ++.++++.+ +-.+|+||..++.|+|+.++++.+++...
T Consensus 111 ~~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~~~~--------g~PvvvKp~~g~gg~Gv~~v~~~~el~~~ 179 (451)
T 1ulz_A 111 LMGDKARSKEVMKKA-GVP--VVPGSDGVLKSLEEAKALAREI--------GYPVLLKATAGGGGRGIRICRNEEELVKN 179 (451)
T ss_dssp HHHSHHHHHHHHHHT-TCC--BCCBCSSSCCCHHHHHHHHHHH--------CSSEEEEECSSSSCCSCEEESSHHHHHHH
T ss_pred HhcCHHHHHHHHHHc-CCC--CCCCcccccCCHHHHHHHHHHc--------CCCEEEEECCCCCCccEEEeCCHHHHHHH
Confidence 467788887777765 422 44554 3322 333443322 24699999999999999999998876654
Q ss_pred hc-----------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCcccccccee
Q 002880 677 ME-----------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFT 745 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlT 745 (871)
.+ ..+++||+||+.+ -++++.++...-... +.+. .|.++ +... ......
T Consensus 180 ~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~~~G~~-~~~~----~~~~~--~~~~------~~~~~~ 239 (451)
T 1ulz_A 180 YEQASREAEKAFGRGDLLLEKFIENP-------KHIEYQVLGDKHGNV-IHLG----ERDCS--IQRR------NQKLVE 239 (451)
T ss_dssp HHHHHHHHHHTTSCCCEEEEECCCSC-------EEEEEEEEECTTSCE-EEEE----EEEEE--EEET------TEEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEEcccCC-------eEEEEEEEEcCCCCE-EEEe----eeecc--cccc------ccccee
Confidence 31 4689999999843 266666665321111 1111 12221 0000 000000
Q ss_pred eeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEec
Q 002880 746 VMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVT 825 (871)
Q Consensus 746 n~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN 825 (871)
.. ..... -..+.++|.+.+.+++.+. +....+++||++|.+++||+||||
T Consensus 240 ---~~-P~~~l----------------~~~~~~~i~~~a~~~~~~l----------g~~G~~~ve~~~~~~g~~~viEiN 289 (451)
T 1ulz_A 240 ---IA-PSLIL----------------TPEKREYYGNIVTKAAKEI----------GYYNAGTMEFIADQEGNLYFIEMN 289 (451)
T ss_dssp ---EE-SCSSC----------------CHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEECTTCCEEEEEEE
T ss_pred ---EC-CcccC----------------CHHHHHHHHHHHHHHHHHc----------CCCcceEEEEEEeCCCCEEEEEee
Confidence 00 00000 0233445555555444432 123577899999999999999999
Q ss_pred CCCCC
Q 002880 826 YCPDC 830 (871)
Q Consensus 826 ~~P~l 830 (871)
..|.-
T Consensus 290 ~R~~~ 294 (451)
T 1ulz_A 290 TRIQV 294 (451)
T ss_dssp CSCCT
T ss_pred CCCCc
Confidence 98864
No 178
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.81 E-value=4.1e-05 Score=85.56 Aligned_cols=183 Identities=18% Similarity=0.177 Sum_probs=100.9
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC-Ch---hHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET-HL---PQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~-el---~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
...|..+.+.++++ |-+ .|+++.+.. +. .+....+ +-.+|+||.+++.|.||.++++.+++....
T Consensus 149 ~~DK~~~k~~l~~~-GIp--~p~~~~~~~~~~~~~~~~~~~l--------g~PvvVKP~~ggss~GV~~v~~~~eL~~a~ 217 (373)
T 3lwb_A 149 GMDKEFTKKLLAAD-GLP--VGAYAVLRPPRSTLHRQECERL--------GLPVFVKPARGGSSIGVSRVSSWDQLPAAV 217 (373)
T ss_dssp HHBHHHHHHHHHHT-TCC--BCCEEEECTTCCCCCHHHHHHH--------CSCEEEEESBCSTTTTCEEECSGGGHHHHH
T ss_pred HcCHHHHHHHHHHc-CcC--CCCEEEEECcccchhHHHHHhc--------CCCEEEEeCCCCCCCCEEEeCCHHHHHHHH
Confidence 34566666666654 422 455555532 11 1222221 246899999999999999999988776544
Q ss_pred c-----cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEee--cCCCCCCCCCccccccceeeeccc
Q 002880 678 E-----TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLA--NNPYSLDKHSFFEYETHFTVMNYG 750 (871)
Q Consensus 678 ~-----~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a--~~~y~~~~~~l~~~~~HlTn~ny~ 750 (871)
+ ..+++||+||+ |+ ++++-|+... ...+.+.--+-++.. ... . ..+.++.. +|.
T Consensus 218 ~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~--~~~~~~~~~~ei~~~~~~~~-~---~~~~d~~~-----ky~ 278 (373)
T 3lwb_A 218 ARARRHDPKVIVEAAIS------GR--ELECGVLEMP--DGTLEASTLGEIRVAGVRGR-E---DSFYDFAT-----KYL 278 (373)
T ss_dssp HHHHTTCSSEEEEECCE------EE--EEEEEEEECT--TSCEEECCCEEEECCSTTCS-E---ESSSCHHH-----HHT
T ss_pred HHHHhcCCCEEEeCCCC------Ce--EEEEEEEECC--CCceEEeeeeEEEccCCCCc-c---ccccchhh-----ccc
Confidence 3 46799999998 44 5666665432 111112222222221 110 0 00111111 111
Q ss_pred cCCCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCC
Q 002880 751 RRFNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPD 829 (871)
Q Consensus 751 ~~~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~ 829 (871)
.+.... ..+. .-+.+.++|+++...++.+. +|..+.++||++|.+++ |++|||..|.
T Consensus 279 ~~~~~~-----------~~Pa~l~~~~~~~i~~~a~~~~~aL----------g~~G~~~vDf~~~~dg~-~vlEIN~~PG 336 (373)
T 3lwb_A 279 DDAAEL-----------DVPAKVDDQVAEAIRQLAIRAFAAI----------DCRGLARVDFFLTDDGP-VINEINTMPG 336 (373)
T ss_dssp CTTCEE-----------ESSCCCCHHHHHHHHHHHHHHHHHT----------TCCSEEEEEEEEETTEE-EEEEEESSCC
T ss_pred CCCceE-----------EeCCCCCHHHHHHHHHHHHHHHHHh----------CCccEEEEEEEEECCCC-EEEEecCCCC
Confidence 000000 0010 11345566777766666553 23467899999999999 9999999999
Q ss_pred CCccccc
Q 002880 830 CTRACKY 836 (871)
Q Consensus 830 l~~~~~~ 836 (871)
+...+-+
T Consensus 337 ~t~~S~~ 343 (373)
T 3lwb_A 337 FTTISMY 343 (373)
T ss_dssp CSTTSHH
T ss_pred CCcccHH
Confidence 8765543
No 179
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.81 E-value=0.00018 Score=81.33 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=54.6
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|..+.+.++++ |-| .|+++.+.+ ++.++.+.+ +-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 99 ~~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~~--------~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~ 167 (424)
T 2yw2_A 99 LEGSKAFAKTFMKKY-GIP--TARYEVFTDFEKAKEYVEKV--------GAPIVVKADGLAAGKGAVVCETVEKAIETLD 167 (424)
T ss_dssp HHHCHHHHHHHHHHT-TCC--BCCEEEESCHHHHHHHHHHH--------CSSEEEEESSCCTTCSEEEESSHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHc-CCC--CCCeEEECCHHHHHHHHHHc--------CCcEEEEeCCCCCCCCEEEECCHHHHHHHHH
Confidence 456888888888765 433 466665543 334443322 2479999999999999999999887765431
Q ss_pred -----------cCCcccccccc
Q 002880 679 -----------TGPKICQKYIE 689 (871)
Q Consensus 679 -----------~~~~IvQkYI~ 689 (871)
..+++||+||+
T Consensus 168 ~~~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 168 RFLNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp HHHTSCTTGGGGSSEEEEECCC
T ss_pred HHHhhhhccCCCCeEEEEECCC
Confidence 25799999997
No 180
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.80 E-value=0.00031 Score=78.18 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=91.3
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|..+.+.+.+..|-| .|++..+.+ ++.++.+.+ +-.+|+||..++.|+|+.++++.+++....+
T Consensus 109 ~~~dK~~~~~~l~~~~gip--~p~~~~~~~~~~~~~~~~~~--------g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~ 178 (391)
T 1kjq_A 109 LTMNREGIRRLAAEELQLP--TSTYRFADSESLFREAVADI--------GYPCIVKPVMSSSGKGQTFIRSAEQLAQAWK 178 (391)
T ss_dssp HHHSHHHHHHHHHTTSCCC--BCCEEEESSHHHHHHHHHHH--------CSSEEEEESCC---CCCEEECSGGGHHHHHH
T ss_pred HhhCHHHHHHHHHHhCCCC--CCCeeeeCCHHHHHHHHHhc--------CCCEEEEeCCCCCCCCeEEECCHHHHHHHHH
Confidence 3466777777663333433 466665543 333343322 2469999999999999999998776654332
Q ss_pred ---------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecC-CCCCCCCCccccccceeeec
Q 002880 679 ---------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANN-PYSLDKHSFFEYETHFTVMN 748 (871)
Q Consensus 679 ---------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~-~y~~~~~~l~~~~~HlTn~n 748 (871)
..+++||+||+. | .++++.++.. .+| +.++.. ..... ..++.. +
T Consensus 179 ~~~~~~~~~~~~~lvEe~i~~-----g--~E~sv~~~~~----------~~g-~~~~~~~~~~~~---~~~~~~-----~ 232 (391)
T 1kjq_A 179 YAQQGGRAGAGRVIVEGVVKF-----D--FEITLLTVSA----------VDG-VHFCAPVGHRQE---DGDYRE-----S 232 (391)
T ss_dssp HHHHHSGGGCCCEEEEECCCC-----S--EEEEEEEEEE----------TTE-EEECCCEEEEEE---TTEEEE-----E
T ss_pred HHHhhcccCCCCEEEEEecCC-----C--eEEEEEEEEe----------CCC-eEEccCcceEEE---CCEEEE-----E
Confidence 468999999983 3 3566655543 122 111110 00000 000100 1
Q ss_pred cccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCC
Q 002880 749 YGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCP 828 (871)
Q Consensus 749 y~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P 828 (871)
|.. . .. -+.+.+++.+++..++.+.. ....+++||+++.+ +||+||||..|
T Consensus 233 ~~p----~-------------~l-~~~~~~~~~~~a~~~~~~lg----------~~G~~~ve~~~~~~-~~~viEiN~R~ 283 (391)
T 1kjq_A 233 WQP----Q-------------QM-SPLALERAQEIARKVVLALG----------GYGLFGVELFVCGD-EVIFSEVSPRP 283 (391)
T ss_dssp EEC----C-------------CC-CHHHHHHHHHHHHHHHHHHC----------SSEEEEEEEEEETT-EEEEEEEESSC
T ss_pred EeC----C-------------CC-CHHHHHHHHHHHHHHHHHcC----------CeeEEEEEEEEeCC-cEEEEEEECCC
Confidence 110 0 00 02234455555555555431 35789999999988 99999999998
Q ss_pred CCC
Q 002880 829 DCT 831 (871)
Q Consensus 829 ~l~ 831 (871)
.-.
T Consensus 284 ~~~ 286 (391)
T 1kjq_A 284 HDT 286 (391)
T ss_dssp CGG
T ss_pred CCC
Confidence 843
No 181
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.79 E-value=2.4e-05 Score=88.24 Aligned_cols=146 Identities=10% Similarity=0.082 Sum_probs=65.5
Q ss_pred ccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccc-cccccccc
Q 002880 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFT-INFGEWAL 254 (871)
Q Consensus 176 l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t-~~~~~~~l 254 (871)
....|++|+.|+|++|+++.++. .++. +.+|+.|.|.+| +.... ...+.+|++|+.+.+.-+ ...+..+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~-----~~aF~~~~~L~~l~l~~~l~~I~~~aF 245 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIG-----SQAFLKTSQLKTIEIPENVSTIGQEAF 245 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEEC-----TTTTTTCTTCCCEECCTTCCEECTTTT
T ss_pred HhhCcccCCeeecCCCcceEech--hhEe-ecccCEEEeCCc-hheeh-----hhHhhCCCCCCEEecCCCccCcccccc
Confidence 34455666666666666554432 2233 455666666543 32222 223344555554444211 01111111
Q ss_pred cccccccCCCCCCCccc----cCCcCCccceeecCCcccc-----ccccccCCCCCCCCcceEeccCCCCCCcchHHHHH
Q 002880 255 GFCGEVYDKDNPSSLCL----RDRPLQSVTSLDLSNRCIH-----NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE 325 (871)
Q Consensus 255 ~~~~~~~~~~~~~~i~~----~~~~l~~L~~LdLS~N~I~-----~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~ 325 (871)
.. .++..+.+|+++.. .-..+.+|+.|+|++|.+. .+.+.+|. .|++|+.|+|. |.+..++..
T Consensus 246 ~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~--~c~~L~~l~l~-~~i~~I~~~---- 317 (401)
T 4fdw_A 246 RE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE--GCPKLARFEIP-ESIRILGQG---- 317 (401)
T ss_dssp TT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT--TCTTCCEECCC-TTCCEECTT----
T ss_pred cc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh--CCccCCeEEeC-CceEEEhhh----
Confidence 11 12222222322211 1123455666666665554 34334554 56666666666 335544422
Q ss_pred HhcCCCCcceeEe
Q 002880 326 VLKGFPCLQSLGV 338 (871)
Q Consensus 326 ~l~~lp~L~~L~L 338 (871)
.+.+|++|+.|.|
T Consensus 318 aF~~c~~L~~l~l 330 (401)
T 4fdw_A 318 LLGGNRKVTQLTI 330 (401)
T ss_dssp TTTTCCSCCEEEE
T ss_pred hhcCCCCccEEEE
Confidence 4556666666655
No 182
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.78 E-value=0.00037 Score=77.19 Aligned_cols=169 Identities=9% Similarity=0.063 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCC-CCCcEEEecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMA-RTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~s-rG~GI~v~~~l~~i~~~~ 677 (871)
....|....+.++++ |-| .|++..+.+ ++.++.+ ..+-.+|+||..++ .|+|+.++++.+++.+..
T Consensus 93 ~~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~--------~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~ 161 (369)
T 3aw8_A 93 VAQDRLREKTFFQGL-GVP--TPPFHPVDGPEDLEEGLK--------RVGLPALLKTRRGGYDGKGQALVRTEEEALEAL 161 (369)
T ss_dssp HHTCHHHHHHHHHHH-TCC--CCCEEEESSHHHHHHHHT--------TTCSSEEEEECCC------EEEECSHHHHHHHH
T ss_pred HhcCHHHHHHHHHHC-CCC--CCCceeeCCHHHHHHHHH--------HcCCCEEEEEcCCCCCcceEEEECCHHHHHHHH
Confidence 356777777777765 433 456655543 2222222 12357999999999 999999999998887765
Q ss_pred c---cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCC
Q 002880 678 E---TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFN 754 (871)
Q Consensus 678 ~---~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~ 754 (871)
+ ..+++||+||+. |+ ++++.++... +. ++..+.. .+ .+.... . +..+++ . ..
T Consensus 162 ~~~~~~~~lvEe~i~~-----g~--e~sv~~~~d~-~G-~~~~~~~--~~----~~~~~~--~--~~~~~~-----p-~~ 216 (369)
T 3aw8_A 162 KALGGRGLILEGFVPF-----DR--EVSLLAVRGR-TG-EVAFYPL--VE----NRHWGG--I--LRLSLA-----P-AP 216 (369)
T ss_dssp TTTCSSSEEEEECCCC-----SE--EEEEEEEECT-TS-CEEECCC--EE----EEEETT--E--EEEEEE-----S-CT
T ss_pred HhcCCCcEEEEEcCCC-----CE--EEEEEEEECC-CC-CEEEECC--ee----eeeeCC--E--EEEEEC-----C-CC
Confidence 4 367999999983 43 5555555431 10 1111100 00 000000 0 000110 0 00
Q ss_pred CCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCc
Q 002880 755 HMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTR 832 (871)
Q Consensus 755 ~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~ 832 (871)
.. -+.+.+++.+++..++.+. +....+++||+++. ++||+||||..|....
T Consensus 217 ~l----------------~~~~~~~~~~~a~~~~~~l----------g~~G~~~vd~~~~~-~~~~viEiN~R~~~~~ 267 (369)
T 3aw8_A 217 GA----------------SEALQKKAEAYALRAMEAL----------DYVGVLALEFFQVG-EELLFNEMAPRVHNSG 267 (369)
T ss_dssp TC----------------CHHHHHHHHHHHHHHHHHH----------TCCEEEEEEEEEET-TEEEEEEEESSCCGGG
T ss_pred CC----------------CHHHHHHHHHHHHHHHHHC----------CCeeEEEEEEEEEC-CcEEEEEEeCCcCCcc
Confidence 00 0223445555555555544 13468899999999 8999999999997644
No 183
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.72 E-value=4.7e-05 Score=85.83 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=122.7
Q ss_pred ceeEEeeccccccccccccccccccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhc
Q 002880 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234 (871)
Q Consensus 155 ~l~~L~L~~~~i~d~~l~~~~l~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~ 234 (871)
.++.+.|.++ |... .......| +|++|.|.. .++.++. .+|.+|++|+.|+|++|.+.....+.|.
T Consensus 136 ~L~~i~l~~~-i~~I---~~~aF~~~-~L~~i~lp~-~l~~I~~--~aF~~c~~L~~l~l~~n~l~~I~~~aF~------ 201 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSI---GDMAFFNS-TVQEIVFPS-TLEQLKE--DIFYYCYNLKKADLSKTKITKLPASTFV------ 201 (401)
T ss_dssp CCSEEECCTT-CCEE---CTTTTTTC-CCCEEECCT-TCCEECS--STTTTCTTCCEEECTTSCCSEECTTTTT------
T ss_pred CccEEEeCCC-ccEE---CHHhcCCC-CceEEEeCC-CccEehH--HHhhCcccCCeeecCCCcceEechhhEe------
Confidence 4667777654 3321 11223334 699999986 6665543 6799999999999999999877655554
Q ss_pred CCCccccccccc-cccccccccccccccCCCCCCCccc---cCCcCCccceeecCCccccccccccCCCCCCCCcceEec
Q 002880 235 CPKLEIYNSNFT-INFGEWALGFCGEVYDKDNPSSLCL---RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310 (871)
Q Consensus 235 lp~Le~lnl~~t-~~~~~~~l~~~~~~~~~~~~~~i~~---~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnL 310 (871)
+.+|+.+.+.-+ ...+..+...|.++..+.+|.++.. .-..-.+|+.+.| .|.++.+.+.+|. .+++|+.|+|
T Consensus 202 ~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~--~c~~L~~l~l 278 (401)
T 4fdw_A 202 YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKL-PNGVTNIASRAFY--YCPELAEVTT 278 (401)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEE-ETTCCEECTTTTT--TCTTCCEEEE
T ss_pred ecccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEe-CCCccEEChhHhh--CCCCCCEEEe
Confidence 456666665422 2345667778888888888876633 2222368999999 5668888778888 8999999999
Q ss_pred cCCCCC-----CcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhCCCcccc
Q 002880 311 RGNPLE-----QNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361 (871)
Q Consensus 311 s~N~L~-----~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L~~L~~L 361 (871)
.+|.+. .++. ..+.+|++|+.|.|. ..+..........|.+|+.|
T Consensus 279 ~~~~~~~~~~~~I~~----~aF~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHP----YCLEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp ESSCCCCCTTCEECT----TTTTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEE
T ss_pred CCccccCCcccEECH----HHhhCCccCCeEEeC--CceEEEhhhhhcCCCCccEE
Confidence 998875 2322 368899999998875 22222222334455555544
No 184
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.71 E-value=0.00025 Score=80.91 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|..+.+.++++ |-| .|+++.+.+ ++.++++.+ +-.+|+||..++.|+|+.++++.+++....+
T Consensus 121 ~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~~--------~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~ 189 (451)
T 2yrx_A 121 EGSKAFAKELMKKY-GIP--TADHAAFTSYEEAKAYIEQK--------GAPIVIKADGLAAGKGVTVAQTVEEALAAAKA 189 (451)
T ss_dssp HHCHHHHHHHHHHT-TCC--BCCEEEESCHHHHHHHHHHH--------CSSEEEEECC----CCEEEESSHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHc-CCC--CCCeEEECCHHHHHHHHHhc--------CCcEEEEeCCCCCCCcEEEECCHHHHHHHHHH
Confidence 45777777777665 433 466665543 344444332 2469999999999999999999887665331
Q ss_pred ----------cCCcccccccccccccCCceeeeeEEEEE
Q 002880 679 ----------TGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 679 ----------~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
..++|||+||+ |+ ++++.+++
T Consensus 190 ~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 220 (451)
T 2yrx_A 190 ALVDGQFGTAGSQVVIEEYLE------GE--EFSFMAFV 220 (451)
T ss_dssp HHHHSCCBTTBCCEEEEECCC------SE--EEEEEEEE
T ss_pred HHhccccCCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 26799999998 44 45555553
No 185
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=97.71 E-value=0.00036 Score=79.50 Aligned_cols=169 Identities=16% Similarity=0.133 Sum_probs=94.6
Q ss_pred cccccHHHHHHHHHhcCCCCccccee--ccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY--NLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf--~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
....|..+.+.++++ |-+ .|+++ .+.+ ++.++.+.+ +-.+|+||..++.|+|+.++++.+++...
T Consensus 116 ~~~dK~~~~~~l~~~-Gip--~p~~~~~~~~~~~e~~~~~~~~--------g~PvvvKp~~g~gg~Gv~~v~~~~el~~~ 184 (446)
T 3ouz_A 116 LMSDKSKAKQVMQRA-GVP--VIPGSDGALAGAEAAKKLAKEI--------GYPVILKAAAGGGGRGMRVVENEKDLEKA 184 (446)
T ss_dssp HHHSHHHHHHHHHHT-TCC--BCSBCSSSCCSHHHHHHHHHHH--------CSSEEEEETTCCTTCSEEEECSGGGHHHH
T ss_pred HhCCHHHHHHHHHHc-CCC--cCCCcccCCCCHHHHHHHHHHh--------CCCEEEEECCCCCCCCEEEECCHHHHHHH
Confidence 356787777777665 422 44554 2222 333443332 24699999999999999999998876654
Q ss_pred hc-----------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCcccccccee
Q 002880 677 ME-----------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFT 745 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlT 745 (871)
.+ .++++||+||+.| -++.+.++.... .-.+++. .|-|+. .. .|-.
T Consensus 185 ~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~d~~-g~~~~~~----~~~~~~--~~---------~~~~ 241 (446)
T 3ouz_A 185 YWSAESEAMTAFGDGTMYMEKYIQNP-------RHIEVQVIGDSF-GNVIHVG----ERDCSM--QR---------RHQK 241 (446)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECCSSC-------EEEEEEEEECTT-SCEEEEE----EEEEEE--EE---------TTEE
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCC-------cEEEEEEEEcCC-CCEEEEe----eceeee--ee---------cCce
Confidence 32 5789999999853 266666654321 1111111 111110 00 0000
Q ss_pred eeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEec
Q 002880 746 VMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVT 825 (871)
Q Consensus 746 n~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN 825 (871)
...... . ...-..+.++|.+.+..++.+. +....+++||++|.+++||+||||
T Consensus 242 ~~~~~p----~-------------~~l~~~~~~~l~~~a~~~~~~l----------g~~G~~~ve~~~~~~g~~~~iEiN 294 (446)
T 3ouz_A 242 LIEESP----A-------------ILLDEKTRTRLHETAIKAAKAI----------GYEGAGTFEFLVDKNLDFYFIEMN 294 (446)
T ss_dssp EEEEES----C-------------TTSCHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEECTTCCEEEEEEE
T ss_pred EEEECC----C-------------CCCCHHHHHHHHHHHHHHHHHc----------CCCCceEEEEEEeCCCCEEEEEeE
Confidence 000000 0 0000233445555555444332 123577899999999999999999
Q ss_pred CCCCC
Q 002880 826 YCPDC 830 (871)
Q Consensus 826 ~~P~l 830 (871)
..|.-
T Consensus 295 pR~~g 299 (446)
T 3ouz_A 295 TRLQV 299 (446)
T ss_dssp SSCCT
T ss_pred CCCCC
Confidence 99964
No 186
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=97.71 E-value=0.00047 Score=78.49 Aligned_cols=170 Identities=13% Similarity=0.065 Sum_probs=95.0
Q ss_pred cccccHHHHHHHHHhcCCCCccccee--ccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY--NLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf--~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
....|..+.+.++++ |-| .|+++ .+.+ ++.++.+.+ +-.+|+||..++.|+|+.++++.+++...
T Consensus 111 ~~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~~~~--------g~PvvvKp~~g~gg~Gv~~v~~~~el~~~ 179 (451)
T 2vpq_A 111 KMGIKDVAKAEMIKA-NVP--VVPGSDGLMKDVSEAKKIAKKI--------GYPVIIKATAGGGGKGIRVARDEKELETG 179 (451)
T ss_dssp HHHSHHHHHHHHHHT-TCC--BCSBCSSCBSCHHHHHHHHHHH--------CSSEEEEETTCCTTCSEEEESSHHHHHHH
T ss_pred HhcCHHHHHHHHHHc-CCC--cCCCcccCcCCHHHHHHHHHhc--------CCcEEEEECCCCCCCCEEEeCCHHHHHHH
Confidence 467788888877765 422 23333 2322 333333322 24699999999999999999998776654
Q ss_pred hc-----------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCcccccccee
Q 002880 677 ME-----------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFT 745 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlT 745 (871)
.+ ..+++||+||+-+ -++++.++...-... +.+. .|.|+- ... +.....
T Consensus 180 ~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~~~G~~-~~~~----~~~~~~--~~~------~~~~~~ 239 (451)
T 2vpq_A 180 FRMTEQEAQTAFGNGGLYMEKFIENF-------RHIEIQIVGDSYGNV-IHLG----ERDCTI--QRR------MQKLVE 239 (451)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECCCSE-------EEEEEEEEECTTSCE-EEEE----EEEEEE--EET------TEEEEE
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCC-------eEEEEEEEEcCCCCE-EEEe----ccccch--hcc------ccceEE
Confidence 32 4689999999843 256666665321111 1110 111110 000 000000
Q ss_pred eeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEc-CCCceEEEEe
Q 002880 746 VMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLD-SSFQPKLLEV 824 (871)
Q Consensus 746 n~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD-~~~kpwLLEV 824 (871)
.. . . +..-+.+.++|.+++.+++.+. +....+++||++| .+++||+|||
T Consensus 240 ---~~-P---~-------------~~l~~~~~~~i~~~a~~~~~~l----------g~~G~~~ve~~~~~~~g~~~viEi 289 (451)
T 2vpq_A 240 ---EA-P---S-------------PILDDETRREMGNAAVRAAKAV----------NYENAGTIEFIYDLNDNKFYFMEM 289 (451)
T ss_dssp ---EE-S---C-------------TTCCHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEEETTTTEEEEEEE
T ss_pred ---Ec-C---C-------------CCCCHHHHHHHHHHHHHHHHHc----------CCcceEEEEEEEECCCCCEEEEEe
Confidence 00 0 0 0001233445555555554432 1236789999999 8999999999
Q ss_pred cCCCCCC
Q 002880 825 TYCPDCT 831 (871)
Q Consensus 825 N~~P~l~ 831 (871)
|..|.-.
T Consensus 290 N~R~~~~ 296 (451)
T 2vpq_A 290 NTRIQVE 296 (451)
T ss_dssp ECSCCTT
T ss_pred eCCCCCc
Confidence 9998643
No 187
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.69 E-value=0.0001 Score=82.08 Aligned_cols=176 Identities=13% Similarity=0.196 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCC-hhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc--
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETH-LPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~e-l~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-- 678 (871)
...|..+.+.++++ |-+ .|++..+.+. ..+..+ ....+-.+|+||..++.|.|+.++++.+++....+
T Consensus 147 ~~DK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~------~~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~ 217 (367)
T 2pvp_A 147 SYNKYLTKLYAKDL-GIK--TLDYVLLNEKNRANALD------LMNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSA 217 (367)
T ss_dssp HHSHHHHHHHHHHH-TCB--CCCCEEECTTTGGGHHH------HCCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHH
T ss_pred HcCHHHHHHHHHHC-CcC--CCCEEEEeCCchHHHHH------HhccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHH
Confidence 44566666666554 422 4566555432 112111 12234579999999999999999998776655432
Q ss_pred ---cCCcccccccccccccCC-ceee-eeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCC
Q 002880 679 ---TGPKICQKYIEFPALFQG-RKFD-LRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRF 753 (871)
Q Consensus 679 ---~~~~IvQkYI~~PlLi~g-rKFD-lR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~ 753 (871)
..+++||+||+ | +-|. +++.| .. + ..++.. +.... . .+.++... |..+.
T Consensus 218 ~~~~~~vlVEe~I~------G~~E~svi~v~v--~g-~-~~~~~~-----ei~~~-----~-~~~d~~~k-----y~~g~ 271 (367)
T 2pvp_A 218 FEYSKEVLIEPFIQ------GVKEYNLAGCKI--KK-D-FCFSYI-----EEPNK-----Q-EFLDFKQK-----YLDFS 271 (367)
T ss_dssp TTTCSCEEEEECCT------TCEEEEEEEEEE--TT-E-EEEEEE-----EETTT-----T-EEECCCCS-----SCCSC
T ss_pred HhcCCcEEEEeCCC------CCceeeEEEEEE--CC-E-EEEEEE-----EEecC-----C-ceEccccc-----ccCCC
Confidence 45789999997 5 5443 44433 11 0 111110 11110 0 01111111 11000
Q ss_pred -CCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCCCc
Q 002880 754 -NHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDCTR 832 (871)
Q Consensus 754 -~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l~~ 832 (871)
...... .. -+.+.++|.++...++.+. ++....++||++| +++||+||||..|++..
T Consensus 272 ~~~~~Pa----------~l-~~~~~~~i~~~a~~~~~aL----------g~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~ 329 (367)
T 2pvp_A 272 RNKAPKA----------SL-SNALEEQLKENFKKLYSDL----------FDGAIIRCDFFVI-ENEVYLNEINPIPGSLA 329 (367)
T ss_dssp CCSCCCC----------CC-CHHHHHHHHHHHHHHHTTT----------STTCCEEEEEEEE-TTEEEEEEEESSCGGGG
T ss_pred eeEEecC----------CC-CHHHHHHHHHHHHHHHHHc----------CCCCEEEEEEEEE-CCeEEEEEEeCCCCCCc
Confidence 000000 00 1234455555555444332 2345689999999 89999999999999854
Q ss_pred cc
Q 002880 833 AC 834 (871)
Q Consensus 833 ~~ 834 (871)
.+
T Consensus 330 ~s 331 (367)
T 2pvp_A 330 NY 331 (367)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 188
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.69 E-value=0.00024 Score=80.20 Aligned_cols=88 Identities=11% Similarity=0.180 Sum_probs=59.8
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
...+|..+.+.++++ |-| .|+++.+.+ ++.++++.+ +-.+|+||..++.|+|+.++++.+++....+
T Consensus 99 ~~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~~--------~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~ 167 (422)
T 2xcl_A 99 IEGSKQFAKDLMKKY-DIP--TAEYETFTSFDEAKAYVQEK--------GAPIVIKADGLAAGKGVTVAMTEEEAIACLH 167 (422)
T ss_dssp HHHCHHHHHHHHHHT-TCC--BCCEEEESCHHHHHHHHHHH--------CSSEEEEESSCGGGTCEEEESSHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHc-CCC--CCCeEEECCHHHHHHHHHhc--------CCCEEEEeCCCCCCCcEEEECCHHHHHHHHH
Confidence 356888888888765 433 466665543 344444332 2469999999999999999999887765432
Q ss_pred -----------cCCcccccccccccccCCceeeeeEEEEE
Q 002880 679 -----------TGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 679 -----------~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
..+++||+||+ |+ ++++.+++
T Consensus 168 ~~~~~~~~g~~~~~~lvEe~i~------g~--E~sv~~~~ 199 (422)
T 2xcl_A 168 DFLEDEKFGDASASVVIEEYLS------GE--EFSLMAFV 199 (422)
T ss_dssp HHHTSCTTGGGGSSEEEEECCC------SE--EEEEEEEE
T ss_pred HHHhhhhccCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 26799999997 43 55665554
No 189
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.68 E-value=1.2e-05 Score=89.56 Aligned_cols=166 Identities=16% Similarity=0.118 Sum_probs=95.1
Q ss_pred cccCCCCcEeeccCCcccc-------HHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCcccccccccccc
Q 002880 177 SSKFPDLQALSLCGNKLET-------VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF 249 (871)
Q Consensus 177 ~~~~p~L~~L~Ls~N~L~~-------~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~ 249 (871)
..++|+|++|.+.++.... ...+...+..+|+|+.|+|++|.-. .+.. -.+++|+.|++..++..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-----~l~~---~~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-----SIGK---KPRPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-----BCCS---CBCTTCSEEEEECSBCC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-----eecc---ccCCCCcEEEEecCCCC
Confidence 4578999999997764321 1124567888999999999998311 1222 13678888877644322
Q ss_pred ccccccccccccCCCCCCCccccCCcCCccceeecCC--ccccccc-----cccCCCCCCCCcceEeccCCCCCCcchHH
Q 002880 250 GEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN--RCIHNLV-----NKAFSPAEMPSLSHLNIRGNPLEQNSVRE 322 (871)
Q Consensus 250 ~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~--N~I~~l~-----p~~~~~~~l~~L~~LnLs~N~L~~l~~~~ 322 (871)
.......| ...+++|+.|+|+. |...+.. ...+....+|+|++|+|++|.+.+.....
T Consensus 207 ~~~l~~l~---------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 207 DSVVEDIL---------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp HHHHHHHH---------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred hHHHHHHH---------------HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 11100111 11378899999863 3222211 12233235899999999999987522122
Q ss_pred HHHHhcCCCCcceeEeeCCCCCCchh-hHHhhhCCCcccccCcccc
Q 002880 323 LLEVLKGFPCLQSLGVDIPGPLGESA-IEILESLPTLCTLNGVTAS 367 (871)
Q Consensus 323 i~~~l~~lp~L~~L~L~iP~~l~~~~-~~Il~~L~~L~~Ln~~~vs 367 (871)
+.. ...+|+|++|+|+.. .+++.. ..+...++++..|..++++
T Consensus 272 la~-a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 272 FLE-SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp HHH-CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHh-CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECC
Confidence 222 246899999999843 355432 2344333333333333443
No 190
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.67 E-value=0.00017 Score=77.34 Aligned_cols=72 Identities=18% Similarity=0.094 Sum_probs=50.9
Q ss_pred cccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEec-ChHHHHHHhc------cCCcccccccccc
Q 002880 621 WLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTD-DLSAVIRLME------TGPKICQKYIEFP 691 (871)
Q Consensus 621 ~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~-~l~~i~~~~~------~~~~IvQkYI~~P 691 (871)
-.|+|+.+.+ ++.+|++.+ +.+|+||..++.|+|+.+++ +.+++....+ ..++++|+||+.+
T Consensus 134 ~~P~t~~~~~~~~~~~~~~~~---------~p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~ 204 (316)
T 1gsa_A 134 LTPETLVTRNKAQLKAFWEKH---------SDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI 204 (316)
T ss_dssp TSCCEEEESCHHHHHHHHHHH---------SSEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG
T ss_pred cCCCeEEeCCHHHHHHHHHHc---------CCEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCC
Confidence 5688887653 344444432 26999999999999999997 6554433221 3689999999842
Q ss_pred cccCCceeeeeEEEE
Q 002880 692 ALFQGRKFDLRYIVL 706 (871)
Q Consensus 692 lLi~grKFDlR~yVL 706 (871)
..+|+|++++
T Consensus 205 -----~~~~~~v~~~ 214 (316)
T 1gsa_A 205 -----KDGDKRVLVV 214 (316)
T ss_dssp -----GGCEEEEEEE
T ss_pred -----CCCCEEEEEE
Confidence 3689999875
No 191
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.67 E-value=0.00044 Score=78.36 Aligned_cols=172 Identities=9% Similarity=-0.010 Sum_probs=92.3
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCC-CCCCCCcEEEecChHHHHHHhc--
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPW-NMARTIDTSVTDDLSAVIRLME-- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~-~~srG~GI~v~~~l~~i~~~~~-- 678 (871)
...|....+.++++ |-| .|+++.+.+ ..+..+ +........ -.+|+||. .|+.|+|+.++++.+++....+
T Consensus 131 ~~dK~~~k~~l~~~-Gip--~p~~~~v~~-~~e~~~-~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~ 204 (419)
T 4e4t_A 131 AQDRIAEKRFIEAS-GVP--VAPHVVIES-AAALAA-LDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL 204 (419)
T ss_dssp HTCHHHHHHHHHHT-TCC--BCCEEEECS-HHHHHT-SCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHc-CcC--CCCeEEECC-HHHHHH-HHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc
Confidence 45666666666544 432 455554433 222211 100000002 46899999 8899999999999888766543
Q ss_pred -cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeeccccCCCCCC
Q 002880 679 -TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMN 757 (871)
Q Consensus 679 -~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~ 757 (871)
.+++|||+||+. ...+.+.++... +|-+++.. ... +.. ........+. .....
T Consensus 205 ~~~~~lvEe~i~~-------~~Eisv~v~~~~----------~G~~~~~~----~~e-~~~--~~g~~~~~~~-Pa~~l- 258 (419)
T 4e4t_A 205 GGVPCVLEKRLPL-------KYEVSALIARGA----------DGRSAAFP----LAQ-NVH--HNGILALTIV-PAPAA- 258 (419)
T ss_dssp TTCCEEEEECCCE-------EEEEEEEEEECT----------TSCEEECC----CEE-EEE--ETTEEEEEEE-SCTTC-
T ss_pred CCCcEEEeecCCC-------CeEEEEEEEEcC----------CCCEEEEe----CeE-EEe--eCCeEEEEEc-CCCCC-
Confidence 478999999973 134555444321 11111110 000 000 0000000000 00000
Q ss_pred ChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCC
Q 002880 758 TPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDC 830 (871)
Q Consensus 758 ~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l 830 (871)
-..+.+++.++...++.+. ++..++++||+++.+++|+++|||..|.-
T Consensus 259 ---------------~~~~~~~~~~~a~~i~~~l----------g~~G~~~vE~~~~~dG~~~v~EiNpR~~~ 306 (419)
T 4e4t_A 259 ---------------DTARVEEAQQAAVRIADTL----------GYVGVLCVEFFVLEDGSFVANEMAPRPHN 306 (419)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHH----------TCCEEEEEEEEEETTCCEEEEEEESSCCG
T ss_pred ---------------CHHHHHHHHHHHHHHHHHC----------CCeeEEEEEEEEeCCCCEEEEEEeCCCCC
Confidence 1234455566665555543 13578999999999999999999999975
No 192
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.67 E-value=0.00087 Score=76.46 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=54.2
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|....+.++++ |-| .|+++.+.+ +..++++. .+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 120 ~~~dK~~~k~~l~~~-GIp--~p~~~~~~~~~ea~~~~~~--------~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~ 188 (442)
T 3lp8_A 120 LESSKGFTKELCMRY-GIP--TAKYGYFVDTNSAYKFIDK--------HKLPLVVKADGLAQGKGTVICHTHEEAYNAVD 188 (442)
T ss_dssp HHHCHHHHHHHHHHH-TCC--BCCEEEESSHHHHHHHHHH--------SCSSEEEEESSCCTTTSEEEESSHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHC-CCC--CCCEEEECCHHHHHHHHHH--------cCCcEEEeECCCCCCCeEEEeCCHHHHHHHHH
Confidence 356777777777665 433 566665543 23333332 23569999999999999999999887765432
Q ss_pred -----------cCCcccccccc
Q 002880 679 -----------TGPKICQKYIE 689 (871)
Q Consensus 679 -----------~~~~IvQkYI~ 689 (871)
..++|||+||+
T Consensus 189 ~~~~~~~~g~~~~~vlvEe~i~ 210 (442)
T 3lp8_A 189 AMLVHHKFGEAGCAIIIEEFLE 210 (442)
T ss_dssp HHHTSCTTGGGGSSEEEEECCC
T ss_pred HHHhhcccCCCCCeEEEEEeec
Confidence 25799999997
No 193
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=6.1e-05 Score=75.30 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=20.0
Q ss_pred CCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCc
Q 002880 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218 (871)
Q Consensus 182 ~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~ 218 (871)
+|++|+|+++.|++.+- ..+.+|++|+.|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL--~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF--DHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGG--GGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHH--HHhcCCCCCCEEEeCCCC
Confidence 46666666666554321 334566666666666664
No 194
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=97.65 E-value=0.00054 Score=76.43 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=56.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccC--CChhHHHhhhhhhhccCCCceEEecCCCCC-CCCcEEEecChHHHHHHh-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLE--THLPQLIGDYYVRKRDGLNNLWILKPWNMA-RTIDTSVTDDLSAVIRLM- 677 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~--~el~~f~~~~~~~~~~~~~~~WIvKP~~~s-rG~GI~v~~~l~~i~~~~- 677 (871)
...|....+.++++ |-| .|+++.+. .++.++.+.+ +-.+|+||..++ .|+|+.++++.+++....
T Consensus 108 ~~dK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~--------g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~ 176 (377)
T 3orq_A 108 LQDRLTEKETLKSA-GTK--VVPFISVKESTDIDKAIETL--------GYPFIVKTRFGGYDGKGQVLINNEKDLQEGFK 176 (377)
T ss_dssp HHSHHHHHHHHHHT-TCC--BCCEEEECSSTHHHHHHHHT--------CSSEEEEESSSCCTTTTEEEECSTTSHHHHHH
T ss_pred hcCHHHHHHHHHHC-CCC--CCCeEEECCHHHHHHHHHHc--------CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHH
Confidence 45666666666554 422 44555443 3455554432 246899999986 899999999877765543
Q ss_pred --ccCCcccccccccccccCCceeeeeEEEE
Q 002880 678 --ETGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 678 --~~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
..+++|||+||+- ..++.+.++
T Consensus 177 ~~~~~~~ivEe~i~g-------~~E~sv~~~ 200 (377)
T 3orq_A 177 LIETSECVAEKYLNI-------KKEVSLTVT 200 (377)
T ss_dssp HHTTSCEEEEECCCE-------EEEEEEEEE
T ss_pred hcCCCcEEEEccCCC-------CEEEEEEEE
Confidence 3478999999983 135666555
No 195
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.64 E-value=0.00053 Score=77.68 Aligned_cols=169 Identities=12% Similarity=0.102 Sum_probs=88.1
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|..+.+.+.+..|-| .|++..+.+ ++.++.+.+ +-.+|+||..++.|+|+.++++.+++....+
T Consensus 117 ~~~dK~~~k~~l~~~~gip--~p~~~~~~~~~~~~~~~~~~--------g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~ 186 (433)
T 2dwc_A 117 IAMHRERLRETLVKEAKVP--TSRYMYATTLDELYEACEKI--------GYPCHTKAIMSSSGKGSYFVKGPEDIPKAWE 186 (433)
T ss_dssp HHHCHHHHHHHHHHTSCCC--CCCEEEESSHHHHHHHHHHH--------CSSEEEEECCC------EEECSGGGHHHHHH
T ss_pred HhhCHHHHHHHHHHhcCCC--CCCeeEeCCHHHHHHHHHhc--------CCCEEEEECCCcCCCCeEEECCHHHHHHHHH
Confidence 3467777777762333433 466665543 333343322 2469999999999999999999887765442
Q ss_pred ---------cCCcccccccccccccCCceeeeeEEEEEee-ecCcE-EEEEc-ceEEEeecCCCCCCCCCccccccceee
Q 002880 679 ---------TGPKICQKYIEFPALFQGRKFDLRYIVLVRS-MDPLE-IFLSD-VFWVRLANNPYSLDKHSFFEYETHFTV 746 (871)
Q Consensus 679 ---------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS-~~PL~-vy~y~-~g~vR~a~~~y~~~~~~l~~~~~HlTn 746 (871)
.++++||+||+. | .++++.++... .+.-. +.++. .+..+ . ..++..+
T Consensus 187 ~~~~~~~~~~~~~lvEe~i~~-----g--~E~sv~~~~~~~~~G~~~~~~~~~~~~~~---~--------~~~~~~~--- 245 (433)
T 2dwc_A 187 EAKTKARGSAEKIIVEEHIDF-----D--VEVTELAVRHFDENGEIVTTFPKPVGHYQ---I--------DGDYHAS--- 245 (433)
T ss_dssp C---------CCEEEEECCCC-----S--EEEEECCEEEECTTSCEEEEEECCEEEEE---S--------SSSEEEE---
T ss_pred HHHhhcccCCCCEEEEccCCC-----C--eeEEEEEEecccCCCCEeEEEecccceEE---E--------cCEEEEE---
Confidence 357999999983 3 24555444321 01100 11111 00000 0 0011111
Q ss_pred eccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecC
Q 002880 747 MNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTY 826 (871)
Q Consensus 747 ~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~ 826 (871)
|.. . .. -+.+.+++.+++..++.+.. +...+++||+++.+ +||+||||.
T Consensus 246 --~~p----~-------------~l-~~~~~~~i~~~a~~~~~~lg----------~~G~~~ve~~~~~~-~~~viEiN~ 294 (433)
T 2dwc_A 246 --WQP----A-------------EI-SEKAEREVYRIAKRITDVLG----------GLGIFGVEMFVKGD-KVWANEVSP 294 (433)
T ss_dssp --EES----C-------------CC-CHHHHHHHHHHHHHHHHHHC----------SSEECEEEEEEETT-EEEEEEEES
T ss_pred --EcC----C-------------CC-CHHHHHHHHHHHHHHHHHcC----------CeeEEEEEEEEeCC-cEEEEEEeC
Confidence 110 0 00 02234455555555555431 35788999999988 999999999
Q ss_pred CCCCC
Q 002880 827 CPDCT 831 (871)
Q Consensus 827 ~P~l~ 831 (871)
.|.-.
T Consensus 295 R~~~~ 299 (433)
T 2dwc_A 295 RPHDT 299 (433)
T ss_dssp SCCGG
T ss_pred CcCCC
Confidence 98854
No 196
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=97.60 E-value=0.00016 Score=79.97 Aligned_cols=90 Identities=9% Similarity=0.130 Sum_probs=35.8
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccC-CChhHHHhhhhhhhccCCCceEEecCCCCC-CCCcEEEecChHHHHHHh-
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLE-THLPQLIGDYYVRKRDGLNNLWILKPWNMA-RTIDTSVTDDLSAVIRLM- 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~-~el~~f~~~~~~~~~~~~~~~WIvKP~~~s-rG~GI~v~~~l~~i~~~~- 677 (871)
....|....+.++++ |-+ .|++..+. .++.++.+. .+-.+|+||..++ .|+|+.++++.+++....
T Consensus 89 ~~~dK~~~~~~l~~~-gip--~p~~~~~~~~~~~~~~~~--------~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~ 157 (365)
T 2z04_A 89 VKKSRIREKLFLKKH-GFP--VPEFLVIKRDEIIDALKS--------FKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVK 157 (365)
T ss_dssp HHTCHHHHHHHHHTT-TCC--CCCEEEC----------------------CEEEECC-----------------------
T ss_pred HhhCHHHHHHHHHHc-CCC--CCCEEEEcHHHHHHHHHh--------cCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHH
Confidence 356777777777654 433 45555443 334333322 2246999999999 999999999887766544
Q ss_pred ---ccCCcccccccccccccCCceeeeeEEEEEe
Q 002880 678 ---ETGPKICQKYIEFPALFQGRKFDLRYIVLVR 708 (871)
Q Consensus 678 ---~~~~~IvQkYI~~PlLi~grKFDlR~yVLvt 708 (871)
...+++||+||+. |+ ++++.++..
T Consensus 158 ~~~~~~~~lvEe~i~~-----g~--e~sv~~~~d 184 (365)
T 2z04_A 158 NHDKEESFIIEEFVKF-----EA--EISCIGVRD 184 (365)
T ss_dssp -------CEEEECCCC-----SE--EEEEEEEEC
T ss_pred HhccCCCEEEEccCCC-----CE--EEEEEEEEC
Confidence 2467999999983 33 677766653
No 197
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.57 E-value=0.00064 Score=77.52 Aligned_cols=88 Identities=10% Similarity=0.137 Sum_probs=56.0
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCce-EEecCCCCCCCCcEEEecChHHHHHHh
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNL-WILKPWNMARTIDTSVTDDLSAVIRLM 677 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~-WIvKP~~~srG~GI~v~~~l~~i~~~~ 677 (871)
....|..+.+.++++ |-| .|+++.+.+ ++.++++. .+-. +|+||..++.|+|+.++++.+++....
T Consensus 125 ~~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~--------~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~ 193 (452)
T 2qk4_A 125 LESSKRFAKEFMDRH-GIP--TAQWKAFTKPEEACSFILS--------ADFPALVVKASGLAAGKGVIVAKSKEEACKAV 193 (452)
T ss_dssp HHHBHHHHHHHHHHT-TCC--BCCEEEESSHHHHHHHHHH--------CSSCEEEEEESBC---CCEEECSSHHHHHHHH
T ss_pred HhcCHHHHHHHHHHC-CCC--CCCeEEECCHHHHHHHHHh--------CCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHH
Confidence 457888888888765 432 456555543 33333332 1235 999999999999999999988776543
Q ss_pred c-----------cCCcccccccccccccCCceeeeeEEEEE
Q 002880 678 E-----------TGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 678 ~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
+ ..+++||+||+ |+ ++++.++.
T Consensus 194 ~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 194 QEIMQEKAFGAAGETIVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp HHHTTC-------CCEEEEECCC------SE--EEEEEEEE
T ss_pred HHHHhhhhccCCCCeEEEEECCC------CC--eEEEEEEE
Confidence 2 25799999998 33 66666654
No 198
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=97.56 E-value=0.00096 Score=75.88 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=94.2
Q ss_pred cccccHHHHHHHHHhcCCCCccccee--ccCC--Ch-hHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY--NLET--HL-PQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIR 675 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf--~L~~--el-~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~ 675 (871)
....|..+.+.++++ |-| .|+++ .+.+ ++ .++++.+ +-.+|+||..++.|+|+.++++.+++..
T Consensus 112 ~~~dK~~~k~~l~~~-gip--~p~~~~~~~~~~~~~~~~~~~~~--------g~PvvvKp~~g~gg~Gv~~v~~~~el~~ 180 (449)
T 2w70_A 112 LMGDKVSAIAAMKKA-GVP--CVPGSDGPLGDDMDKNRAIAKRI--------GYPVIIKASGGGGGRGMRVVRGDAELAQ 180 (449)
T ss_dssp HHHSHHHHHHHHHHH-TCC--BCSBCSSCCCSCHHHHHHHHHHH--------CSSEEEEETTCCTTTTCEEECSHHHHHH
T ss_pred HhcCHHHHHHHHHHc-CCC--cCCCcccccCCHHHHHHHHHHHh--------CCcEEEEECCCCCCCCEEEeCCHHHHHH
Confidence 467788877777765 422 34444 3322 33 4444332 2469999999999999999999877665
Q ss_pred Hhc-----------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccce
Q 002880 676 LME-----------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHF 744 (871)
Q Consensus 676 ~~~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~Hl 744 (871)
..+ ..+++||+||+.+ -++++.++... +.-.+++. .|.|+. ... .....
T Consensus 181 ~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~~~~~~-~G~~~~~~----~~~~~~--~~~------~~~~~ 240 (449)
T 2w70_A 181 SISMTRAEAKAAFSNDMVYMEKYLENP-------RHVEIQVLADG-QGNAIYLA----ERDCSM--QRR------HQKVV 240 (449)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEECCSSC-------EEEEEEEEECT-TSCEEEEE----EEEEEE--EET------TEEEE
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccCCC-------eEEEEEEEEcC-CCCEEEEe----ceeccc--ccC------Cccee
Confidence 432 4689999999842 25666665432 11011111 122210 000 00000
Q ss_pred eeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEe
Q 002880 745 TVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEV 824 (871)
Q Consensus 745 Tn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEV 824 (871)
. .. ..... -..+.+++.+.+.+++.+.. ....+++||+++. ++||+|||
T Consensus 241 ~---~~-p~~~l----------------~~~~~~~i~~~a~~~~~~lg----------~~G~~~ve~~~~~-~~~~viEi 289 (449)
T 2w70_A 241 E---EA-PAPGI----------------TPELRRYIGERCAKACVDIG----------YRGAGTFEFLFEN-GEFYFIEM 289 (449)
T ss_dssp E---EE-SCTTC----------------CHHHHHHHHHHHHHHHHHHT----------CCEEEEEEEEEET-TEEEEEEE
T ss_pred e---eC-CcccC----------------CHHHHHHHHHHHHHHHHHcC----------CCceEEEEEEEEC-CCEEEEEE
Confidence 0 00 00000 02334455555555555431 2356899999998 89999999
Q ss_pred cCCCCC
Q 002880 825 TYCPDC 830 (871)
Q Consensus 825 N~~P~l 830 (871)
|..|.-
T Consensus 290 N~R~~~ 295 (449)
T 2w70_A 290 NTRIQV 295 (449)
T ss_dssp ECSCCT
T ss_pred ECCCCc
Confidence 999864
No 199
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.53 E-value=0.001 Score=75.58 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=58.8
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|....+.++++ |-| .|+++...+ +..++++.+ +-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 104 ~~~dK~~~k~~l~~~-GIp--tp~~~~~~~~~ea~~~~~~~--------g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~ 172 (431)
T 3mjf_A 104 LEGSKAFTKDFLARH-NIP--SAEYQNFTDVEAALAYVRQK--------GAPIVIKADGLAAGKGVIVAMTQEEAETAVN 172 (431)
T ss_dssp HHHCHHHHHHHHHHT-TCS--BCCEEEESCHHHHHHHHHHH--------CSSEEEEESSSCTTCSEEEECSHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHc-CCC--CCCeEeeCCHHHHHHHHHHc--------CCeEEEEECCCCCCCcEEEeCCHHHHHHHHH
Confidence 356777777777654 433 466665543 333443332 2469999999999999999999887665432
Q ss_pred -----------cCCcccccccccccccCCceeeeeEEEEE
Q 002880 679 -----------TGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 679 -----------~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
..++|||+||+ |+ ++.+.+++
T Consensus 173 ~~~~~~~~g~~~~~vlvEe~i~------G~--E~sv~~~~ 204 (431)
T 3mjf_A 173 DMLAGNAFGDAGHRIVVEEFLD------GE--EASFIVMV 204 (431)
T ss_dssp HHHTTHHHHCCCCCEEEEECCC------SE--EEEEEEEE
T ss_pred HHHhhccccCCCCeEEEEEeeC------Cc--EEEEEEEE
Confidence 24799999998 43 55555554
No 200
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.49 E-value=0.0012 Score=74.41 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=96.4
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|....+.++++ |-| .|++..+.+ ++.++++ ..+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 104 ~~dK~~~k~~l~~~-gip--~p~~~~~~~~~e~~~~~~--------~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~ 172 (412)
T 1vkz_A 104 EGSKVYAKRFMKKY-GIR--TARFEVAETPEELREKIK--------KFSPPYVIKADGLARGKGVLILDSKEETIEKGSK 172 (412)
T ss_dssp HHCHHHHHHHHHHT-TCC--CCCEEEESSHHHHHHHHT--------TSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHc-CCC--CCCEEEECCHHHHHHHHH--------hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHH
Confidence 46777777777665 433 355544432 2223322 123579999999999999999999887765321
Q ss_pred ----------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCccccccceeeec
Q 002880 679 ----------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMN 748 (871)
Q Consensus 679 ----------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlTn~n 748 (871)
.++++||+||+ |+ ++.+.++.. .-.++..- . ...+.. ..+... ..+
T Consensus 173 ~~~~~~~~g~~~~vlvEe~i~------G~--E~sv~~~~d---g~~~~~~~----~--~~~~~~----~~~~~~---~~~ 228 (412)
T 1vkz_A 173 LIIGELIKGVKGPVVIDEFLA------GN--ELSAMAVVN---GRNFVILP----F--VRDYKR----LMDGDR---GPN 228 (412)
T ss_dssp HHHTSSSTTCCSCEEEEECCC------SE--EEEEEEEEE---TTEEEECC----C--CEECCE----EETTTE---EEE
T ss_pred HHhhccccCCCCeEEEEECCc------Cc--EEEEEEEEC---CCEEEEee----e--eEeeee----ccCCCC---CCC
Confidence 13789999997 44 455555542 21122110 0 000100 000000 000
Q ss_pred cccCCCCCCChhhHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCC
Q 002880 749 YGRRFNHMNTPDFVRGFEAEHQV-KWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYC 827 (871)
Q Consensus 749 y~~~~~~~~~~df~~~~~~~~~~-~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~ 827 (871)
.+. .... .+. .-+++.+++.+++..++.+.... ...+...+++||+++.++ ||+||||..
T Consensus 229 ~g~-~~~~------------~P~~l~~~~~~~i~~~a~~~~~~l~~~-----g~~~~G~~~ve~~~~~~g-~~viEiN~R 289 (412)
T 1vkz_A 229 TGG-MGSW------------GPVEIPSDTIKKIEELFDKTLWGVEKE-----GYAYRGFLYLGLMLHDGD-PYILEYNVR 289 (412)
T ss_dssp CSC-SEEE------------ECCCCCHHHHHHHHHHHHHHHHHHHHT-----TCCCEEEEEEEEEEETTE-EEEEEEESS
T ss_pred CCC-ceEE------------ECCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCcEEEEEEEEEEECCC-cEEEEEecC
Confidence 000 0000 000 01234555666666666665422 113468899999999988 999999999
Q ss_pred CCCC
Q 002880 828 PDCT 831 (871)
Q Consensus 828 P~l~ 831 (871)
|+-.
T Consensus 290 ~g~~ 293 (412)
T 1vkz_A 290 LGDP 293 (412)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9754
No 201
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=97.47 E-value=0.00032 Score=85.00 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHhcCCCCcccceeccC--CChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEec---ChHHHHHHhc
Q 002880 604 MKHHLAETVQKAHGSPEWLQPTYNLE--THLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTD---DLSAVIRLME 678 (871)
Q Consensus 604 ~K~~L~~~l~~~~g~~~~lP~Tf~L~--~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~---~l~~i~~~~~ 678 (871)
.|....+.++++ |-| .|+++... .+..+++. ...+..+|+||..|+.|+|+.+++ +.+++....+
T Consensus 484 DK~~tk~lL~~~-GIP--vP~~~~~~~~~ea~~~~~-------~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~ 553 (750)
T 3ln6_A 484 NKVVTKKILDEK-HFP--TPFGDEFTDRKEALNYFS-------QIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAID 553 (750)
T ss_dssp TSHHHHHHHHHT-TCC--CCCCCCEETTTTHHHHHH-------HSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CcC--CCCEEEECCHHHHHHHHH-------HhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHH
Confidence 677777777665 433 46665543 23333331 112467999999999999999998 7776665443
Q ss_pred -----cCCcccccccccccccCCceeeeeEEEE
Q 002880 679 -----TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 679 -----~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
....+||+||+ |+ |+|+.|+
T Consensus 554 ~~~~~~~~vlVEefI~------G~--E~~v~Vv 578 (750)
T 3ln6_A 554 IAFTEDSAILVEEYIE------GT--EYRFFVL 578 (750)
T ss_dssp HHHHHCSEEEEEECCC------SE--EEEEEEE
T ss_pred HHHhhCCcEEEEeccC------CC--EEEEEEE
Confidence 46799999997 53 9999876
No 202
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.42 E-value=0.00084 Score=77.33 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=54.6
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME 678 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~ 678 (871)
....|..+.+.++++ |-+ .|+++.+.+ ++.++.+. .+-.+|+||..++.|+|+.++++.+++.+..+
T Consensus 136 ~~~DK~~~k~~l~~~-GIp--vp~~~~v~s~ee~~~~~~~--------lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~ 204 (474)
T 3vmm_A 136 NARDKNKMRDAFNKA-GVK--SIKNKRVTTLEDFRAALEE--------IGTPLILKPTYLASSIGVTLITDTETAEDEFN 204 (474)
T ss_dssp HTTCHHHHHHHHHHT-TSC--CCCEEEECSHHHHHHHHHH--------SCSSEEEEESSCCTTTTCEEECCTTSHHHHHH
T ss_pred HhhCHHHHHHHHHHc-CCC--CCCeEEECCHHHHHHHHHH--------cCCCEEEEECCCCcCceEEEECCHHHHHHHHH
Confidence 467788888888765 422 566665543 23333322 23468999999999999999998776654331
Q ss_pred -----------------cCCcccccccccc
Q 002880 679 -----------------TGPKICQKYIEFP 691 (871)
Q Consensus 679 -----------------~~~~IvQkYI~~P 691 (871)
.+..+||+||+.+
T Consensus 205 ~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 205 RVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp HHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred HHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 3578999999854
No 203
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.37 E-value=0.00037 Score=70.82 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCcceEeccCC---CCCCcchHHHHHHhcCCCCcceeEee
Q 002880 302 MPSLSHLNIRGN---PLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 302 l~~L~~LnLs~N---~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
-+.|+.|+|++| .+..-....|...+..=+.|..|+++
T Consensus 125 N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 125 TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 344666666544 22322223455556666666666665
No 204
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.36 E-value=0.00048 Score=74.62 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=46.3
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhccC
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETG 680 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~~~ 680 (871)
....|..+.+.+++ |-+ .|+|+. ...+..||+||..++.|+|+.++++ ...
T Consensus 107 ~~~dK~~~~~~l~~--Gip--~p~~~~-----------------~~~~~P~vvKP~~g~gs~Gv~~v~~--------~~~ 157 (305)
T 3df7_A 107 VTSDKWELYKKLRG--EVQ--VPQTSL-----------------RPLDCKFIIKPRTACAGEGIGFSDE--------VPD 157 (305)
T ss_dssp HHTSHHHHHHHHTT--TSC--CCCEES-----------------SCCSSSEEEEESSCC----CBCCSS--------CCT
T ss_pred HhcCHHHHHHHHHh--CCC--CCCEec-----------------ccCCCCEEEEeCCCCCCCCEEEEec--------CCC
Confidence 45677777777765 532 566653 0123559999999999999999988 467
Q ss_pred CcccccccccccccCCceeeeeEEEEE
Q 002880 681 PKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 681 ~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
++++|+||+ |+ ++++.++.
T Consensus 158 ~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 158 GHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp TEEEEECCC------SE--EEEEEEEE
T ss_pred CEEEEeccC------Cc--EEEEEEEe
Confidence 899999998 54 56666664
No 205
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.33 E-value=0.00051 Score=74.59 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=38.0
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-c
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME-T 679 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-~ 679 (871)
....|..+.+.++++ |-+ .|+|+....++.+++. ....+-.+|+||..++.|+|+.++++.+++....+ .
T Consensus 111 ~~~dK~~~~~~l~~~-gip--~p~~~~~~~~~~~~~~------~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~ 181 (331)
T 2pn1_A 111 LCFDKYTMYEYCLRQ-GIA--HARTYATMASFEEALA------AGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKN 181 (331)
T ss_dssp HHHBHHHHHHHHHHH-TCC--CCCEESSHHHHHHHHH------TTSSCSCEEEEESBC----------------------
T ss_pred HhhCHHHHHHHHHHc-CCC--CCcEEecHHHhhhhhh------cccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHhC
Confidence 457888888888766 422 5667653333333321 01234579999999999999999998887766543 3
Q ss_pred CCcccccccc
Q 002880 680 GPKICQKYIE 689 (871)
Q Consensus 680 ~~~IvQkYI~ 689 (871)
.+++||+||+
T Consensus 182 ~~~lvee~i~ 191 (331)
T 2pn1_A 182 TDLIVQELLV 191 (331)
T ss_dssp -CEEEEECCC
T ss_pred CCeEEEecCC
Confidence 5799999998
No 206
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=0.0003 Score=71.52 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=91.0
Q ss_pred CcchhhHHHhhhcccccCCCCceeEEeeccc-ccccccccccc-ccccCCCCcEeeccCCccccHH--HHHHHHhcCCCC
Q 002880 134 KSNVEDILESEIHNATEKGDGTVKWLELEDA-DIGDDMLLSLN-LSSKFPDLQALSLCGNKLETVE--IIVQEVTKLKNL 209 (871)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~-~i~d~~l~~~~-l~~~~p~L~~L~Ls~N~L~~~~--~i~~~l~~L~~L 209 (871)
..+|.+.|.+-.. ....++.|+|+++ +|.+.+...+- ....-..|+.|+|++|+|.+.+ .+...|..=+.|
T Consensus 26 ~t~v~~~l~~ll~-----~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 26 DTDVESCINRLRE-----DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100 (197)
T ss_dssp -CCHHHHHHHHHT-----TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC
T ss_pred CCCHHHHHHHHHh-----cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc
Confidence 4456666655432 2456899999996 99986654432 3344578999999999999655 356778888999
Q ss_pred CeeeCCCCcccccccccchhHHhhcCCCccccccccccccccccccccccccCCCCCCCccccCCcCCccceeecCCcc-
Q 002880 210 RALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC- 288 (871)
Q Consensus 210 k~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t~~~~~~~l~~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~- 288 (871)
+.|+|+.|.|.... ...+...+.. -+.|+.|+|++|.
T Consensus 101 ~~L~L~~N~Ig~~G----a~ala~aL~~--------------------------------------N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 101 RVLNVESNFLTPEL----LARLLRSTLV--------------------------------------TQSIVEFKADNQRQ 138 (197)
T ss_dssp CEEECCSSBCCHHH----HHHHHHHTTT--------------------------------------TCCCSEEECCCCSS
T ss_pred CeEecCCCcCCHHH----HHHHHHHHhh--------------------------------------CCceeEEECCCCcC
Confidence 99999999995432 3333333322 4469999998763
Q ss_pred --cccc----ccccCCCCCCCCcceEeccCCCCC
Q 002880 289 --IHNL----VNKAFSPAEMPSLSHLNIRGNPLE 316 (871)
Q Consensus 289 --I~~l----~p~~~~~~~l~~L~~LnLs~N~L~ 316 (871)
|... +-+.+. .-+.|+.|+|+.|.+.
T Consensus 139 ~~ig~~g~~~ia~aL~--~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 139 SVLGNQVEMDMMMAIE--ENESLLRVGISFASME 170 (197)
T ss_dssp CCCCHHHHHHHHHHHH--HCSSCCEEECCCCCHH
T ss_pred cCcCHHHHHHHHHHHH--hCCCcCeEeccCCCcc
Confidence 3322 122333 5688999999988654
No 207
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=97.29 E-value=0.0019 Score=75.48 Aligned_cols=133 Identities=10% Similarity=-0.007 Sum_probs=73.8
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc-------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcce
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME-------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVF 721 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g 721 (871)
-.+|+||..++.|+|+.++++.+++.+..+ .++.+||+||+.| -++.+-|+.... .-.+.++
T Consensus 229 yPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~-------rei~V~vl~d~~-G~vv~l~--- 297 (540)
T 3glk_A 229 FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-------RHLEVQILADQY-GNAVSLF--- 297 (540)
T ss_dssp SSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSE-------EEEEEEEEECTT-SCEEEEE---
T ss_pred CcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC-------cEEEEEEEEcCC-CCEEEEe---
Confidence 468999999999999999998877665432 4689999999852 255555554321 1112111
Q ss_pred EEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 722 WVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 722 ~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
.|-|+.. ... ...... . .. ...-..+.++|.++...+..+.
T Consensus 298 -~rd~s~q--r~~------~k~ie~---~----Pa-------------~~l~~~~~~~l~~~a~~~~~al---------- 338 (540)
T 3glk_A 298 -GRDCSIQ--RRH------QKIVEE---A----PA-------------TIAPLAIFEFMEQCAIRLAKTV---------- 338 (540)
T ss_dssp -EEEEEEC-----------CCSEEE---E----SC-------------TTSCHHHHHHHHHHHHHHHHHH----------
T ss_pred -ceeeeee--ecc------cceEEe---c----CC-------------CCCCHHHHHHHHHHHHHHHHHc----------
Confidence 1222100 000 000000 0 00 0001234455555555554443
Q ss_pred CcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 802 ~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
++....++||++|.++++|+||||..|.-.
T Consensus 339 G~~G~~~VEf~~d~dg~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 339 GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 368 (540)
T ss_dssp TCCEEEEEEEEEETTSCEEEEEEECSCCTT
T ss_pred CCccceEEEEEEcCCCCEEEEEEECCCCCc
Confidence 124567899999999999999999999743
No 208
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=97.26 E-value=0.0022 Score=75.52 Aligned_cols=133 Identities=10% Similarity=-0.007 Sum_probs=78.2
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc-------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcce
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME-------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVF 721 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g 721 (871)
-.+|+||..++.|+|+.++++.+++....+ .++.+||+||+.| -++.+-|+.... .-.+.++
T Consensus 245 yPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~-------rei~V~vl~D~~-G~vv~l~--- 313 (587)
T 3jrx_A 245 FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-------RHLEVQILADQY-GNAVSLF--- 313 (587)
T ss_dssp SSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC-------EEEEEEEEECSS-SCEEEEE---
T ss_pred CeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC-------cEEEEEEEEcCC-CCEEEEe---
Confidence 468999999999999999998877665432 4689999999853 255555554321 1112211
Q ss_pred EEEeecCCCCCCCCCccccccceeeeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 002880 722 WVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSS 801 (871)
Q Consensus 722 ~vR~a~~~y~~~~~~l~~~~~HlTn~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~ 801 (871)
.|-|+-. ... ...... . .. ...-..+.++|.++...+..+.
T Consensus 314 -~rd~siq--rr~------qk~ie~---a----Pa-------------~~l~~~~~~~i~~~A~~~a~al---------- 354 (587)
T 3jrx_A 314 -GRDCSIQ--RRH------QKIVEE---A----PA-------------TIAPLAIFEFMEQCAIRLAKTV---------- 354 (587)
T ss_dssp -EEEEEEE--SSS------CEEEEE---E----SC-------------CSSCHHHHHHHHHHHHHHHHHH----------
T ss_pred -eeecccc--ccc------cceeEe---c----CC-------------CCCCHHHHHHHHHHHHHHHHHc----------
Confidence 1222100 000 000000 0 00 0001234455555555554443
Q ss_pred CcEEEEeeeEEEcCCCceEEEEecCCCCCC
Q 002880 802 KSRAMYGVDIMLDSSFQPKLLEVTYCPDCT 831 (871)
Q Consensus 802 ~~fel~G~D~mlD~~~kpwLLEVN~~P~l~ 831 (871)
++....++||++|.++++|+||||..|.-.
T Consensus 355 Gy~G~~~VEfl~d~dG~~yflEINpRl~~e 384 (587)
T 3jrx_A 355 GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 384 (587)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEESSCCTT
T ss_pred CCcceeEEEEEEeCCCCEEEEEEeCCCCCc
Confidence 124567899999999999999999999743
No 209
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=97.25 E-value=0.003 Score=72.13 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=57.4
Q ss_pred cccccHHHHHHHHHhcCCCCccccee--ccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY--NLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf--~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
....|..+.+.++++ |-| .|+++ .+.+ ++.++.+.. +-.+|+||..++.|+|+.++++.+++...
T Consensus 117 ~~~dK~~~k~~l~~~-Gip--~p~~~~~~~~~~~~~~~~~~~~--------g~PvvvKp~~g~gg~Gv~~v~~~~el~~~ 185 (461)
T 2dzd_A 117 MFGDKVKARHAAVNA-GIP--VIPGSDGPVDGLEDVVAFAEAH--------GYPIIIKAALGGGGRGMRIVRSKSEVKEA 185 (461)
T ss_dssp HTTSHHHHHHHHHHT-TCC--BCCBCSSCCSSHHHHHHHHHHH--------CSCEEEEESTTCSSSSEEEECCGGGHHHH
T ss_pred HhhCHHHHHHHHHHc-CCC--CCCCcccCcCCHHHHHHHHHhc--------CCcEEEEeCCCCCCCCEEEeCCHHHHHHH
Confidence 467788888777665 422 34444 2222 333333322 24699999999999999999987766543
Q ss_pred hc-----------cCCcccccccccccccCCceeeeeEEEEE
Q 002880 677 ME-----------TGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
.+ ..+++||+||+.+ + ++++-++.
T Consensus 186 ~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~ 220 (461)
T 2dzd_A 186 FERAKSEAKAAFGSDEVYVEKLIENP-----K--HIEVQILG 220 (461)
T ss_dssp HHHHHHHHHHHTSCCCEEEEECCCSC-----E--EEEEEEEE
T ss_pred HHHHHHHHHhhcCCCcEEEEECCCCC-----e--EEEEEEEE
Confidence 32 4679999999842 2 45555554
No 210
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.15 E-value=0.0029 Score=76.64 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=59.9
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEe----cChHHHHHHh
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVT----DDLSAVIRLM 677 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~----~~l~~i~~~~ 677 (871)
...|....+.++++ |-| .|++....+ ..+..+.+ ....+-.+|+||..|+.|+|+.++ .+.+++...+
T Consensus 487 ~~DK~~tk~lL~~~-GIP--vP~~~~~~~-~~ea~~~~----~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al 558 (757)
T 3ln7_A 487 MENKVVTKKVLQKA-GFN--VPQSVEFTS-LEKAVASY----ALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKAL 558 (757)
T ss_dssp HHHSHHHHHHHHHH-TCC--CCCEEEESC-HHHHHHGG----GGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHH
T ss_pred hcCHHHHHHHHHHC-CcC--CCCEEEECC-HHHHHHHH----HHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHH
Confidence 34777777777765 533 566665543 22322222 122345799999999999999998 6777765543
Q ss_pred c-----cCCcccccccccccccCCceeeeeEEEE
Q 002880 678 E-----TGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 678 ~-----~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
+ ....+||+||+ | .|+|+.|+
T Consensus 559 ~~a~~~~~~vlVEefI~------G--~Ei~v~Vl 584 (757)
T 3ln7_A 559 EIAFREDKEVMVEDYLV------G--TEYRFFVL 584 (757)
T ss_dssp HHHHHHCSSEEEEECCC------S--EEEEEEEE
T ss_pred HHHHhcCCcEEEEEcCC------C--cEEEEEEE
Confidence 2 46799999995 5 39999876
No 211
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.13 E-value=0.00055 Score=68.36 Aligned_cols=88 Identities=11% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCC-CCCcchHHHHHHhcC----CCCcceeEeeCCCCCCchhhH
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP-LEQNSVRELLEVLKG----FPCLQSLGVDIPGPLGESAIE 350 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~-L~~l~~~~i~~~l~~----lp~L~~L~L~iP~~l~~~~~~ 350 (871)
--.|+.||||+|.|+...-..+. .+++|++|+|++|. |++ ..+..+ .. +++|++|+|+-+..+++....
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD---~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIED---GCLERL-SQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCH---HHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCH---HHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 34799999999998765335555 79999999999996 553 334333 43 468999999988889888877
Q ss_pred HhhhCCCcccccCcccchh
Q 002880 351 ILESLPTLCTLNGVTASKI 369 (871)
Q Consensus 351 Il~~L~~L~~Ln~~~vs~~ 369 (871)
-++.+++|+.|+=.+...+
T Consensus 134 ~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HGGGCTTCCEEEEESCTTC
T ss_pred HHhcCCCCCEEECCCCCCC
Confidence 7888999988876665544
No 212
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=97.09 E-value=0.0045 Score=72.59 Aligned_cols=42 Identities=12% Similarity=-0.011 Sum_probs=35.2
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc-------cCCccccccccc
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME-------TGPKICQKYIEF 690 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-------~~~~IvQkYI~~ 690 (871)
-.+|+||..++.|+|+.++++.+++....+ ..+++||+||+.
T Consensus 235 ~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g 283 (554)
T 1w96_A 235 FPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR 283 (554)
T ss_dssp SSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS
T ss_pred CCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 469999999999999999999887765432 468999999984
No 213
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.03 E-value=0.0079 Score=75.98 Aligned_cols=78 Identities=5% Similarity=0.080 Sum_probs=44.0
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|..+.+.++++ |-+ .|++..+.+ ++.++.+.. +-.+|+||..+..|+|+.++.+.+++.+.++
T Consensus 672 ~~DK~~~~~ll~~~-GIp--~P~~~~~~s~eea~~~~~~i--------g~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~ 740 (1073)
T 1a9x_A 672 AEDRERFQHAVERL-KLK--QPANATVTAIEMAVEKAKEI--------GYPLVVRASYVLGGRAMEIVYDEADLRRYFQT 740 (1073)
T ss_dssp HHSHHHHHHHHHHH-TCC--CCCEEECCSHHHHHHHHHHH--------CSSEEEEC-------CEEEECSHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHc-CcC--CCCceEECCHHHHHHHHHHc--------CCCEEEEECCCCCCCCeEEECCHHHHHHHHHH
Confidence 45666666666554 432 566665543 334444332 2468999999999999999999888776553
Q ss_pred ------cCCccccccccc
Q 002880 679 ------TGPKICQKYIEF 690 (871)
Q Consensus 679 ------~~~~IvQkYI~~ 690 (871)
..+++||+||+.
T Consensus 741 a~~~~~~~~vlvEefI~g 758 (1073)
T 1a9x_A 741 AVSVSNDAPVLLDHFLDD 758 (1073)
T ss_dssp CC--------EEEBCCTT
T ss_pred HHhhCCCCcEEEEEccCC
Confidence 357999999984
No 214
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=96.95 E-value=0.008 Score=66.53 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=52.5
Q ss_pred ccccCCCc---ccccHHHHHHHHHhcCCCCcccceeccC--CChhHHHhhhhhhhccCCCceEEecCCCC-CCCCcEEEe
Q 002880 594 NQFPFESC---LVMKHHLAETVQKAHGSPEWLQPTYNLE--THLPQLIGDYYVRKRDGLNNLWILKPWNM-ARTIDTSVT 667 (871)
Q Consensus 594 N~fP~~~~---lt~K~~L~~~l~~~~g~~~~lP~Tf~L~--~el~~f~~~~~~~~~~~~~~~WIvKP~~~-srG~GI~v~ 667 (871)
.-.|+... ...|...-+.++++ |-| .|++..+. .++.++.+.+ +-..|+||..+ +.|+|+.++
T Consensus 66 ~v~p~~~a~~~~~DK~~~k~~l~~~-GIp--tp~~~~v~~~~e~~~~~~~~--------G~P~VvKp~~~G~~GkGv~~v 134 (355)
T 3eth_A 66 PAFVNRDVFPIIADRLTQKQLFDKL-HLP--TAPWQLLAERSEWPAVFDRL--------GELAIVKRRTGGYDGRGQWRL 134 (355)
T ss_dssp TTBTTTTHHHHHHSHHHHHHHHHHT-TCC--BCCEEEECCGGGHHHHHHHH--------CSEEEEEESSSCCTTTTEEEE
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHHC-ccC--CCCEEEECCHHHHHHHHHHc--------CCCEEEEecCCCCCCCeEEEE
Confidence 44566553 34666666666544 432 23333332 3455554433 35689999985 899999999
Q ss_pred cC--hHHHHHHhccCCcccccccc
Q 002880 668 DD--LSAVIRLMETGPKICQKYIE 689 (871)
Q Consensus 668 ~~--l~~i~~~~~~~~~IvQkYI~ 689 (871)
++ .+++.+..-. +.|||+||+
T Consensus 135 ~~~~~~el~~a~~~-~vivEe~I~ 157 (355)
T 3eth_A 135 RANETEQLPAECYG-ECIVEQGIN 157 (355)
T ss_dssp ETTCGGGSCGGGTT-TEEEEECCC
T ss_pred cCCCHHHHHHHhhC-CEEEEEccC
Confidence 99 7776542212 689999997
No 215
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=96.90 E-value=0.0019 Score=77.52 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=88.5
Q ss_pred cccccHHHHHHHHHhcCCCCcccceecc----CCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNL----ETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L----~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
.+..|....+.++++ |-| .|+++.. ..++.++.+.+ +-.+|+||..++.|+|+.++++.+++...
T Consensus 138 ~~~DK~~~k~~l~~~-GVp--vpp~~~~~~~s~~e~~~~a~~i--------gyPvvvKp~~G~Gg~Gv~iv~~~~el~~a 206 (675)
T 3u9t_A 138 AMGSKSAAKALMEEA-GVP--LVPGYHGEAQDLETFRREAGRI--------GYPVLLKAAAGGGGKGMKVVEREAELAEA 206 (675)
T ss_dssp HHTSHHHHHHHHHHT-TCC--BCCCCCSCCCCTTHHHHHHHHS--------CSSBCCBCCC------CCCBCCTTTHHHH
T ss_pred HhchHHHHHHHHHHc-CcC--cCCccccCCCCHHHHHHHHHhC--------CCcEEEEECCCCCCccEEEECCHHHHHHH
Confidence 356777777777665 422 3344431 22344443322 34689999999999999999998887765
Q ss_pred hc-----------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCcccccccee
Q 002880 677 ME-----------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFT 745 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlT 745 (871)
.+ .++++||+||+.| -++.+-|+... +.-.+++ +.|-|+... .|-.
T Consensus 207 ~~~~~~ea~~~fg~~~vlvEeyI~g~-------reiev~v~~d~-~G~vv~l----~~rd~s~qr-----------~~qk 263 (675)
T 3u9t_A 207 LSSAQREAKAAFGDARMLVEKYLLKP-------RHVEIQVFADR-HGHCLYL----NERDCSIQR-----------RHQK 263 (675)
T ss_dssp HSCCCC--------CCCBCCBCCSSC-------BCEEEEEEECS-SSCEEEE----EEEECCCBS-----------SSSB
T ss_pred HHHHHHHHHHhcCCCcEEEEeecCCC-------cEEEEEEEEcC-CCCEEEE----eccccceee-----------ccce
Confidence 43 3579999999964 24455444332 1111221 112222110 0000
Q ss_pred eeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEec
Q 002880 746 VMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVT 825 (871)
Q Consensus 746 n~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN 825 (871)
...... . +..-..+.++|.+++..+..+. +.....++||++|.++++|+||||
T Consensus 264 ~ie~~P----a-------------~~l~~~~~~~l~~~a~~~~~al----------g~~G~~~vEf~~~~dG~~~~iEiN 316 (675)
T 3u9t_A 264 VVEEAP----A-------------PGLGAELRRAMGEAAVRAAQAI----------GYVGAGTVEFLLDERGQFFFMEMN 316 (675)
T ss_dssp CEEEES----C-------------SSCCHHHHHHHHHHHHHHHHHT----------TCCSEEEEECCBCTTSCBCBCEEE
T ss_pred EEEECC----C-------------CCCCHHHHHHHHHHHHHHHHHc----------CCccceEEEEEEcCCCCEEEEecc
Confidence 000000 0 0001234445555555444332 123577999999999999999999
Q ss_pred CCCCC
Q 002880 826 YCPDC 830 (871)
Q Consensus 826 ~~P~l 830 (871)
..|.-
T Consensus 317 pR~~~ 321 (675)
T 3u9t_A 317 TRLQV 321 (675)
T ss_dssp SSCCT
T ss_pred ccccC
Confidence 99964
No 216
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=96.80 E-value=0.0013 Score=79.18 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=20.0
Q ss_pred cccccHHHHHHHHHhcCCCCccccee-cc---CCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY-NL---ETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf-~L---~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
.+..|....+.++++ |-| .|++| .. ..++.++.+. -+-.+|+||..++.|+|+.++++.+++...
T Consensus 112 ~~~dK~~~k~~l~~~-GVP--vpp~~~~~~~s~~e~~~~a~~--------igyPvVvKp~~ggggkGv~iv~~~~el~~a 180 (681)
T 3n6r_A 112 AMGDKITSKKIAQEA-NVS--TVPGYMGLIEDADEAVKISNQ--------IGYPVMIKASAGGGGKGMRIAWNDQEAREG 180 (681)
T ss_dssp HTTSHHHHHHHHHTT-TCC--CCCC-------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHc-CcC--cCCccccCcCCHHHHHHHHHh--------cCCcEEEEECCCCCCCCEEEECCHHHHHHH
Confidence 356777777777655 322 23333 11 1233333322 234689999999999999999988776654
Q ss_pred hc-----------cCCcccccccccccccCCceeeeeEEEEE
Q 002880 677 ME-----------TGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
.+ .++++||+||+.| -++.+-|+.
T Consensus 181 ~~~~~~ea~~~fg~~~vlvEe~I~g~-------rei~V~v~~ 215 (681)
T 3n6r_A 181 FQSSKNEAANSFGDDRIFIEKFVTQP-------RHIEIQVLC 215 (681)
T ss_dssp ----------------------CCSC-------EEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCcEEEEeccCCC-------cEEEEEEEE
Confidence 32 3579999999964 255555554
No 217
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=96.65 E-value=0.024 Score=71.68 Aligned_cols=88 Identities=9% Similarity=0.002 Sum_probs=58.9
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|..+.+.++++ |-| .|+++.+.+ ++.++.+.. +-.+|+||..+..|+|+.++++.+++.+..+
T Consensus 126 ~~DK~~~k~~l~~~-Gip--vp~~~~v~~~~ea~~~~~~i--------g~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~ 194 (1073)
T 1a9x_A 126 AEDRRRFDVAMKKI-GLE--TARSGIAHTMEEALAVAADV--------GFPCIIRPSFTMGGSGGGIAYNREEFEEICAR 194 (1073)
T ss_dssp HHSHHHHHHHHHHT-TCC--CCSEEEESSHHHHHHHHHHH--------CSSEEEEETTCCTTTTCEEESSHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHC-CcC--CCCEEEECCHHHHHHHHHHc--------CCCEEEEECCCCCCCceEEeCCHHHHHHHHHH
Confidence 45777777777665 432 467766543 233333322 2468999999999999999999887765442
Q ss_pred ------cCCcccccccccccccCCceeeeeEEEEE
Q 002880 679 ------TGPKICQKYIEFPALFQGRKFDLRYIVLV 707 (871)
Q Consensus 679 ------~~~~IvQkYI~~PlLi~grKFDlR~yVLv 707 (871)
.++++||+||+-+ + ++.+-|+.
T Consensus 195 ~~~~~~~~~vlvEe~I~G~-----~--E~~v~v~~ 222 (1073)
T 1a9x_A 195 GLDLSPTKELLIDESLIGW-----K--EYEMEVVR 222 (1073)
T ss_dssp HHHHCTTSCEEEEECCTTS-----E--EEEEEEEE
T ss_pred HHhhCCCCcEEEEEccCCC-----e--EEEEEEEE
Confidence 2579999999842 2 55565554
No 218
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.57 E-value=0.0018 Score=74.00 Aligned_cols=123 Identities=19% Similarity=0.146 Sum_probs=75.6
Q ss_pred EEccccCCCcccccHHHHH---HHHHhcCCCC---cccceeccCC--ChhHHHhhhhhhhccCCCceEEecCCCCCCCCc
Q 002880 592 YVNQFPFESCLVMKHHLAE---TVQKAHGSPE---WLQPTYNLET--HLPQLIGDYYVRKRDGLNNLWILKPWNMARTID 663 (871)
Q Consensus 592 ~vN~fP~~~~lt~K~~L~~---~l~~~~g~~~---~lP~Tf~L~~--el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~G 663 (871)
++|. ||..++-.|..++- .++.+.|... .+| ||.... ++..+++. -..|++||..++.|.|
T Consensus 309 i~Na-~gsgv~~dKal~a~Lp~l~~~~lgEe~il~~Vp-T~~c~~~~~~~~vl~~---------l~~lViKp~~g~gg~g 377 (474)
T 3n6x_A 309 LANA-VGTGVADDKDTYIYVPEMIRFYLGEEPILSNVP-TYQLSKADDLKYVLDN---------LAELVVKEVQGSGGYG 377 (474)
T ss_dssp EESC-TTTHHHHSTTTGGGHHHHHHHHHCSCCSSEECC-CEETTSHHHHHHHHHS---------GGGEEEEECCCE----
T ss_pred EeCC-CchhhhcCcHHHHHhHHHHHHhCCHhhhccCCC-ceecCCHHHHHHHHhc---------hhheEEEecCCCCCCc
Confidence 4565 47788888885443 3444445443 345 443322 23333322 2679999999999999
Q ss_pred EEEecCh--H---HHHHHhccCC--ccccccccc---ccccCC----ceeeeeEEEEEeeecCcEEEEEcceEEEeecCC
Q 002880 664 TSVTDDL--S---AVIRLMETGP--KICQKYIEF---PALFQG----RKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNP 729 (871)
Q Consensus 664 I~v~~~l--~---~i~~~~~~~~--~IvQkYI~~---PlLi~g----rKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~ 729 (871)
+.+-..+ + ++.+.+...| ||+|+||.- |.+.+| |++|+|.|++.. -..++.-.|+.|+|..+
T Consensus 378 v~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g----~~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 378 MLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG----KTVSLVPGALCRVALRE 453 (474)
T ss_dssp -EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES----SSEEECSCCEEEEECST
T ss_pred eEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC----CceEEecceEEEEecCC
Confidence 9885532 2 3333344456 999999984 444454 899999999863 24788899999999864
No 219
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=96.32 E-value=0.013 Score=74.19 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=43.8
Q ss_pred cccccHHHHHHHHHhcCCCCccccee--ccC--CChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY--NLE--THLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf--~L~--~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
....|....+.++++ |-| .|+++ ... .++.++.+. -+-.+|+||..++.|+|+.++++.+++.+.
T Consensus 115 ~~~DK~~~r~ll~~a-GIP--vpp~~~~~v~s~eea~~~a~~--------iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a 183 (1150)
T 3hbl_A 115 MFGDKVKARTTAIKA-DLP--VIPGTDGPIKSYELAKEFAEE--------AGFPLMIKATSGGGGKGMRIVREESELEDA 183 (1150)
T ss_dssp HHHSHHHHHHHHHHT-TCC--BCCBCSSCBCSSSTTTTTGGG--------TCSSEEEECCC-------CEECCSSSCTHH
T ss_pred HhCCHHHHHHHHHHc-CcC--CCCccccCCCCHHHHHHHHHH--------cCCCEEEEeCCCCCCCCEEEECCHHHHHHH
Confidence 356777777777665 422 33333 121 233333322 235689999999999999999987665543
Q ss_pred hc-----------cCCcccccccccc
Q 002880 677 ME-----------TGPKICQKYIEFP 691 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~P 691 (871)
.+ .++++||+||+.|
T Consensus 184 ~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 184 FHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp HHSSSSSCC------CBEEECCCSSC
T ss_pred HHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 32 3578999999864
No 220
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=96.03 E-value=0.019 Score=63.60 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=76.1
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc----------c--CCcccccccccccccCCceeeeeEEEEEeeecC----
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME----------T--GPKICQKYIEFPALFQGRKFDLRYIVLVRSMDP---- 712 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~----------~--~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~P---- 712 (871)
-..|+||..++.|+|++++++.+++....+ . .+.|||+||+ |.-+. . ..-..|
T Consensus 151 ~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~------G~e~s--~---~~f~~~~~~~ 219 (361)
T 2r7k_A 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV------GTNFC--I---HYFYSPLKDE 219 (361)
T ss_dssp SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC------SEEEE--E---EEEEETTTTE
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc------eEEee--E---EEEecccCCe
Confidence 578999999999999999999888765431 1 4689999998 54443 1 011111
Q ss_pred cE-------EEEEcceEEEee-cCCCCCCCCCccccccceeee-ccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHH
Q 002880 713 LE-------IFLSDVFWVRLA-NNPYSLDKHSFFEYETHFTVM-NYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNT 783 (871)
Q Consensus 713 L~-------vy~y~~g~vR~a-~~~y~~~~~~l~~~~~HlTn~-ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~ 783 (871)
++ .+.+.+|.+|+. ...+.... ...++.. |.. . .+ -+.+.+++.++
T Consensus 220 ~e~~~id~r~~~~~dgi~~~~~~~~~~~~~------~p~~v~~G~~P--a-~l----------------~~~~~~~a~~~ 274 (361)
T 2r7k_A 220 VELLGMDKRYESNIDGLVRIPAKDQLEMNI------NPSYVITGNIP--V-VI----------------RESLLPQVFEM 274 (361)
T ss_dssp EEEEEEEEEEEEEHHHHTTSCHHHHHTCCC------CCCEEEEEEEE--C-CC----------------CGGGHHHHHHH
T ss_pred eEEEEecceEEeecccceecchhhhhcccC------CCceEEecCcC--C-cC----------------CHHHHHHHHHH
Confidence 11 112233333221 11111100 0111110 000 0 00 01234455666
Q ss_pred HHHHHHHHHhhCCCCCCCCcEEEEeeeEEEcCCCceEEEEecCCCCC
Q 002880 784 IRSVFEAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKLLEVTYCPDC 830 (871)
Q Consensus 784 i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD~~~kpwLLEVN~~P~l 830 (871)
...+..++....+ +.....+++++.++.+++++++|||..|.=
T Consensus 275 a~~v~~al~~~~~----~~~~G~~~vE~fvt~dg~i~V~EIapR~gG 317 (361)
T 2r7k_A 275 GDKLVAKAKELVP----PGMIGPFCLQSLCNENLELVVFEMSARVDG 317 (361)
T ss_dssp HHHHHHHHHHHST----TCCCEEEEEEEEECTTSCEEEEEEESSBCG
T ss_pred HHHHHHHHHhhcc----CCccceEEEEEEEcCCCCEEEEEEcCCCCC
Confidence 6666665543222 145789999999999999999999877663
No 221
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=95.93 E-value=0.021 Score=72.54 Aligned_cols=170 Identities=12% Similarity=0.028 Sum_probs=57.5
Q ss_pred cccccHHHHHHHHHhcCCCCccccee--cc--CCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTY--NL--ETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf--~L--~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~ 676 (871)
....|....+.++++ |-| .|+++ .+ ..++.++... .+-.+|+||..++.|+|+.++++.+++...
T Consensus 131 ~~~DK~~~k~~l~~~-GIP--vp~~~~~~v~s~eea~~~a~~--------igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a 199 (1165)
T 2qf7_A 131 QLGNKVAARNLAISV-GVP--VVPATEPLPDDMAEVAKMAAA--------IGYPVMLKASWGGGGRGMRVIRSEADLAKE 199 (1165)
T ss_dssp HHHSHHHHHHHHHHT-TCC--BC---------------------------------------------------------
T ss_pred HHCCHHHHHHHHHHc-CCC--CCCeeCcCCCCHHHHHHHHHh--------cCCCEEEEeCCCCCCCCEEEECCHHHHHHH
Confidence 456777777777665 422 33443 22 1233333322 234689999999999999999987776543
Q ss_pred hc-----------cCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcceEEEeecCCCCCCCCCcccccccee
Q 002880 677 ME-----------TGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFT 745 (871)
Q Consensus 677 ~~-----------~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~g~vR~a~~~y~~~~~~l~~~~~HlT 745 (871)
.+ ..+++||+||+.+ + ++.+-++...-.. .+.++ -|-|+. .. .|-.
T Consensus 200 ~~~~~~~a~~~fg~~~vlVEefI~gg-----~--EisV~vl~D~~G~-vv~l~----~r~~s~--~r---------~~~~ 256 (1165)
T 2qf7_A 200 VTEAKREAMAAFGKDEVYLEKLVERA-----R--HVESQILGDTHGN-VVHLF----ERDCSV--QR---------RNQK 256 (1165)
T ss_dssp --------------------CCCSSE-----E--EEEEEEEECTTSC-EEEEE----EEEEEE--EE---------TTEE
T ss_pred HHHHHHHHHhhcCCCcEEEEEeccCC-----c--EEEEEEEEcCCCc-EEEEE----eecccc--ee---------cccc
Confidence 32 3568999999842 2 5555555432111 11111 121210 00 0000
Q ss_pred eeccccCCCCCCChhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcEEEEeeeEEEc-CCCceEEEEe
Q 002880 746 VMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGVDIMLD-SSFQPKLLEV 824 (871)
Q Consensus 746 n~ny~~~~~~~~~~df~~~~~~~~~~~w~~I~~~I~~~i~~~~~a~~~~~~~~~~~~~fel~G~D~mlD-~~~kpwLLEV 824 (871)
...+. .. ...-..+.++|.+++..+..+. +.....++||++| .+++||+|||
T Consensus 257 ~~e~~----Pa-------------~~l~~~~~~~i~~~a~~i~~al----------g~~G~~~vEf~vd~~dg~~~~iEi 309 (1165)
T 2qf7_A 257 VVERA----PA-------------PYLSEAQRQELAAYSLKIAGAT----------NYIGAGTVEYLMDADTGKFYFIEV 309 (1165)
T ss_dssp EEEEE----SC-------------TTCCHHHHHHHHHHHHHHHHHT----------TCCEEEEEEEEEETTTTEEEEEEE
T ss_pred eEEec----cc-------------ccCCHHHHHHHHHHHHHHHHHc----------CCCcceeEEEEEECCCCCEEEEEE
Confidence 00000 00 0001233445555555444432 1234678999999 8899999999
Q ss_pred cCCCCCC
Q 002880 825 TYCPDCT 831 (871)
Q Consensus 825 N~~P~l~ 831 (871)
|..|.-.
T Consensus 310 NpR~~~~ 316 (1165)
T 2qf7_A 310 NPRIQVE 316 (1165)
T ss_dssp ECSCCTT
T ss_pred EcCCCCC
Confidence 9988753
No 222
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=95.88 E-value=0.024 Score=72.24 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=16.6
Q ss_pred ccccHHHHHHHHHhcCCCCcccceeccC--CChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHHhc-
Q 002880 602 LVMKHHLAETVQKAHGSPEWLQPTYNLE--THLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLME- 678 (871)
Q Consensus 602 lt~K~~L~~~l~~~~g~~~~lP~Tf~L~--~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~- 678 (871)
...|....+.++++ |- +..|.+.... .++.++.+. -+-.+|+||..++.|+|+.++++.+++....+
T Consensus 142 ~~DK~~ak~ll~~a-GI-Pvpp~~~~v~s~eea~~~a~~--------iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~ 211 (1236)
T 3va7_A 142 LGLKHSAREIAERA-KV-PLVPGSGLIKDAKEAKEVAKK--------LEYPVMVKSTAGGGGIGLQKVDSEDDIERVFET 211 (1236)
T ss_dssp HHSTTHHHHHHHHT-TC-CCCC----------------------------------------------------------
T ss_pred hcCHHHHHHHHHHc-CC-CCCCeeEecCCHHHHHHHHHH--------cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHH
Confidence 56677777777655 32 1222222221 223333222 23468999999999999999998877655432
Q ss_pred ----------cCCcccccccccccccCCceeeeeEEEEEe
Q 002880 679 ----------TGPKICQKYIEFPALFQGRKFDLRYIVLVR 708 (871)
Q Consensus 679 ----------~~~~IvQkYI~~PlLi~grKFDlR~yVLvt 708 (871)
...++||+||+.+ -++.+-++..
T Consensus 212 ~~~~a~~~~~~~~vlVEeyI~G~-------rEisV~vl~D 244 (1236)
T 3va7_A 212 VQHQGKSYFGDAGVFMERFVNNA-------RHVEIQMMGD 244 (1236)
T ss_dssp ---------------------CC-------EEEEEEEEEE
T ss_pred HHHHHHhccCCCcEEEeeccCCC-------eEEEEEEEec
Confidence 3568999999852 2555555543
No 223
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.55 E-value=0.011 Score=55.62 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=34.6
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCC
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~ 317 (871)
..+|+.|+|++|.|+.+.+..|. .+++|+.|+|++|++.-
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWRC 69 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCBC
T ss_pred CcCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCeec
Confidence 34789999999999999778887 79999999999999864
No 224
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.40 E-value=0.049 Score=60.38 Aligned_cols=77 Identities=16% Similarity=0.285 Sum_probs=46.7
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEeeCCCCCCchhhHHhhhC
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESL 355 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~iP~~l~~~~~~Il~~L 355 (871)
+.+|+.+.+. +.+..+...+|. .+++|+.++|..| +..+.. ..+.+|.+|+++.+ |..+..........|
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~--~c~~L~~i~lp~~-v~~I~~----~aF~~C~~L~~i~i--p~sv~~I~~~aF~~C 356 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFA--GCISLKSIDIPEG-ITQILD----DAFAGCEQLERIAI--PSSVTKIPESAFSNC 356 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTT--TCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEE--CTTCCBCCGGGGTTC
T ss_pred ccccccccCC-CcccccCceeec--CCCCcCEEEeCCc-ccEehH----hHhhCCCCCCEEEE--CcccCEEhHhHhhCC
Confidence 4566677765 456666556666 6788888888654 554432 25777888887776 433333323345666
Q ss_pred CCccccc
Q 002880 356 PTLCTLN 362 (871)
Q Consensus 356 ~~L~~Ln 362 (871)
.+|+.++
T Consensus 357 ~~L~~i~ 363 (394)
T 4gt6_A 357 TALNNIE 363 (394)
T ss_dssp TTCCEEE
T ss_pred CCCCEEE
Confidence 6666553
No 225
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.30 E-value=0.019 Score=63.82 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=28.3
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEe
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV 338 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L 338 (871)
+.+|+.++|.++ +..+...+|. .+++|+.++|..| +..++.. .+.+|++|+++.+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~~----aF~~C~~L~~i~l 373 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFR--GCTSLSNINFPLS-LRKIGAN----AFQGCINLKKVEL 373 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTT--TCTTCCEECCCTT-CCEECTT----TBTTCTTCCEEEE
T ss_pred CCCCCEEEeCCc-ccEEhHHhcc--CCCCCCEEEECcc-ccEehHH----HhhCCCCCCEEEE
Confidence 445555555433 5555445554 5556666666544 4443322 4555566665554
No 226
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=94.98 E-value=0.065 Score=58.82 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=28.3
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhccCCcccccccc
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIE 689 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~~~~~IvQkYI~ 689 (871)
-.+|+||..++.|+|+.++++.+++... ...+++|+||+
T Consensus 126 ~P~vvKp~~g~g~~gv~~v~~~~~~~~~--~~~~~~ee~i~ 164 (363)
T 4ffl_A 126 PPYFVKPPCESSSVGARIIYDDKDLEGL--EPDTLVEEYVE 164 (363)
T ss_dssp SCEEEECSSCCTTTTCEEEC------CC--CTTCEEEECCC
T ss_pred CCEEEEECCCCCCcCeEEeccHHHhhhh--ccchhhhhhcc
Confidence 4589999999999999999998876542 46789999986
No 227
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.94 E-value=0.023 Score=63.05 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=68.3
Q ss_pred cccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccc-ccccccccc
Q 002880 177 SSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFT-INFGEWALG 255 (871)
Q Consensus 177 ~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t-~~~~~~~l~ 255 (871)
...|.+|+++.|.. .++.++. .+|.+|++|+.++|.+| +... ....+.+|+.|+.+.+.-+ ...+..+..
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~--~aF~~c~~L~~i~lp~~-l~~I-----~~~aF~~c~~L~~i~~p~~l~~i~~~aF~ 137 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGE--FAFENCSKLEIINIPDS-VKMI-----GRCTFSGCYALKSILLPLMLKSIGVEAFK 137 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECT--TTTTTCTTCCEECCCTT-CCEE-----CTTTTTTCTTCCCCCCCTTCCEECTTTTT
T ss_pred hhCCCCceEEEeCC-CccCcch--hHhhCCCCCcEEEeCCC-ceEc-----cchhhcccccchhhcccCceeeecceeee
Confidence 45567777777753 3555443 46777777777777655 3222 2233345555554443211 111222222
Q ss_pred ccccccCCCCCCCccc-c---CCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCC
Q 002880 256 FCGEVYDKDNPSSLCL-R---DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331 (871)
Q Consensus 256 ~~~~~~~~~~~~~i~~-~---~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp 331 (871)
.|...... .+..... + -..+.+|+.+.|.++ +..+....|. .+++|+.++|..| +..+.. ..+.+|+
T Consensus 138 ~~~~~~~~-~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~--~c~~L~~i~l~~~-~~~I~~----~~F~~~~ 208 (394)
T 4fs7_A 138 GCDFKEIT-IPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFS--GCGKLKSIKLPRN-LKIIRD----YCFAECI 208 (394)
T ss_dssp TCCCSEEE-CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCBCCCCTT-CCEECT----TTTTTCT
T ss_pred cccccccc-cCccccccchhhhcccCCCcEEecCCc-cceecccccc--CCCCceEEEcCCC-ceEeCc----hhhcccc
Confidence 22211111 1111100 0 123456666666544 3344445555 5666777776655 433322 2455566
Q ss_pred CcceeEee
Q 002880 332 CLQSLGVD 339 (871)
Q Consensus 332 ~L~~L~L~ 339 (871)
.|+.+.+.
T Consensus 209 ~L~~i~~~ 216 (394)
T 4fs7_A 209 LLENMEFP 216 (394)
T ss_dssp TCCBCCCC
T ss_pred ccceeecC
Confidence 66655543
No 228
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=94.91 E-value=0.019 Score=60.83 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=46.0
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCCCChhhchhhccccccCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTP 500 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~~~~~~r~~~l~~w~~~~ 500 (871)
.++.-|+||-+||+.+.++. -|.- .-.-.++-++||++|||+|=||-........+.+....|+...
T Consensus 185 n~aRfiNHSC~PN~~~~~~~-~~~~-----~~~i~i~A~RdI~~GEELt~dYg~~~~~~~~~~~~ap~W~~~~ 251 (261)
T 2f69_A 185 SLGHKANHSFTPNCIYDMFV-HPRF-----GPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVE 251 (261)
T ss_dssp CCGGGCEECSSCSEEEEEEE-ETTT-----EEEEEEEESSCBCTTCEEEECCCCCSCCC-----CSCHHHHHH
T ss_pred cceeeEeeCCCCCeEEEEEE-cCCC-----CcEEEEEECcccCCCCEEEEEcCCccccccccCccCccHHHHH
Confidence 35688999999999998863 2331 1233778899999999999999877665555666666675443
No 229
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.27 E-value=0.045 Score=48.76 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=34.8
Q ss_pred ceEEecCCCCCCCCcEEEecChHHHHHHhc-----------cCCcccccccccc
Q 002880 649 NLWILKPWNMARTIDTSVTDDLSAVIRLME-----------TGPKICQKYIEFP 691 (871)
Q Consensus 649 ~~WIvKP~~~srG~GI~v~~~l~~i~~~~~-----------~~~~IvQkYI~~P 691 (871)
-.+|+||..++.|+|+.++++.+++..... ...++||+||+-+
T Consensus 46 ~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 46 YPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp SSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred CCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 468999999999999999999877665432 3679999999853
No 230
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=93.98 E-value=0.031 Score=60.90 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=20.9
Q ss_pred CceEEecCCCCCCCCcEEEecChHHHHHHhc--cCCcccccccc
Q 002880 648 NNLWILKPWNMARTIDTSVTDDLSAVIRLME--TGPKICQKYIE 689 (871)
Q Consensus 648 ~~~WIvKP~~~srG~GI~v~~~l~~i~~~~~--~~~~IvQkYI~ 689 (871)
+-..|+||..++.|+|++++++ +++....+ ++++|||+||+
T Consensus 125 ~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 125 DELYFVRIEGPRGGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp SCCEEEECC------------C-EECSCCCC----CCEEEECCC
T ss_pred CCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 3568999999999999999999 87754331 15799999998
No 231
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=93.70 E-value=0.069 Score=57.37 Aligned_cols=109 Identities=15% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCcEEccccCCCcccccHHHHHHHHHhcCCCCcccceeccCCChh-----HHHh--hhhhhhccCCCceEEecCCCCC--
Q 002880 589 DQQYVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNLETHLP-----QLIG--DYYVRKRDGLNNLWILKPWNMA-- 659 (871)
Q Consensus 589 ~~q~vN~fP~~~~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~-----~f~~--~~~~~~~~~~~~~WIvKP~~~s-- 659 (871)
.--.||..+-...+..|-..++.|++. |- =.|.|..+..+-. .|++ ++...........+|.||..|+
T Consensus 82 ~p~~INd~~~q~~~~DK~~~~~iL~~~-gI--PtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdh 158 (330)
T 3t7a_A 82 NPFVINDLNMQYLIQDRREVYSILQAE-GI--LLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDH 158 (330)
T ss_dssp CCEESBCSTHHHHHTBHHHHHHHHHHT-TC--CCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBTTCC
T ss_pred CCceeCCHHHHHHHHHHHHHHHHHHHc-CC--CCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEcccccccC
Confidence 344689998888899999999999875 32 2677776654321 1111 1110001112355788888875
Q ss_pred ---------CCCcE-EEecChH---HH----HHHhccCCcccccccccccccCCceeeeeEEEE
Q 002880 660 ---------RTIDT-SVTDDLS---AV----IRLMETGPKICQKYIEFPALFQGRKFDLRYIVL 706 (871)
Q Consensus 660 ---------rG~GI-~v~~~l~---~i----~~~~~~~~~IvQkYI~~PlLi~grKFDlR~yVL 706 (871)
+|.|- .+++... .. ......+.+|+|+||.. +| =|||+||+
T Consensus 159 ni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~----~G--~DIRv~vV 216 (330)
T 3t7a_A 159 NVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT----DG--TDVKVYTV 216 (330)
T ss_dssp CCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC----SS--EEEEEEEE
T ss_pred cceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC----CC--ceEEEEEE
Confidence 66666 4443221 10 01123678999999985 46 59999998
No 232
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.48 E-value=0.056 Score=59.31 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=80.4
Q ss_pred cccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccc-ccccccccc
Q 002880 177 SSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFT-INFGEWALG 255 (871)
Q Consensus 177 ~~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t-~~~~~~~l~ 255 (871)
...+.+|+.+.+..+ ++.++ ...+..+.+|+.+.+..+ +.... ...+.++..|+.+.+.-. ...+..
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~--~~~f~~~~~L~~i~lp~~-v~~I~-----~~aF~~~~~l~~i~l~~~i~~i~~~--- 280 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLG--DGAFYGMKALDEIAIPKN-VTSIG-----SFLLQNCTALKTLNFYAKVKTVPYL--- 280 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEEC--TTTTTTCSSCCEEEECTT-CCEEC-----TTTTTTCTTCCEEEECCCCSEECTT---
T ss_pred cccccccceeeeccc-eeEEc--cccccCCccceEEEcCCC-ccEeC-----ccccceeehhccccccccceecccc---
Confidence 455778888888665 33332 246778899999999877 43322 233344555544432110 000000
Q ss_pred ccccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcce
Q 002880 256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335 (871)
Q Consensus 256 ~~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~ 335 (871)
.-..+.+|+.+.+.++.+..+...+|. .+++|+.+.|..+ +..++. ..+.+|++|++
T Consensus 281 ----------------aF~~c~~L~~i~l~~~~i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~----~aF~~C~~L~~ 337 (379)
T 4h09_A 281 ----------------LCSGCSNLTKVVMDNSAIETLEPRVFM--DCVKLSSVTLPTA-LKTIQV----YAFKNCKALST 337 (379)
T ss_dssp ----------------TTTTCTTCCEEEECCTTCCEECTTTTT--TCTTCCEEECCTT-CCEECT----TTTTTCTTCCC
T ss_pred ----------------ccccccccccccccccccceehhhhhc--CCCCCCEEEcCcc-ccEEHH----HHhhCCCCCCE
Confidence 012367888999988888888778887 7899999999754 665443 26788888887
Q ss_pred eEe
Q 002880 336 LGV 338 (871)
Q Consensus 336 L~L 338 (871)
+.+
T Consensus 338 i~i 340 (379)
T 4h09_A 338 ISY 340 (379)
T ss_dssp CCC
T ss_pred EEE
Confidence 765
No 233
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.41 E-value=0.1 Score=57.70 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 276 l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
+.+|+.++|.++ ++.+...+|. .+++|+.+.|..+ +..++.. .+.+|++|+++.+.
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~--~C~~L~~i~ip~s-v~~I~~~----aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFA--GCEQLERIAIPSS-VTKIPES----AFSNCTALNNIEYS 365 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEECTT-CCBCCGG----GGTTCTTCCEEEES
T ss_pred CCCcCEEEeCCc-ccEehHhHhh--CCCCCCEEEECcc-cCEEhHh----HhhCCCCCCEEEEC
Confidence 456666666543 5555455665 6677777777543 5544322 56667777766654
No 234
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=93.36 E-value=0.076 Score=51.91 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=37.6
Q ss_pred cccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCCCC
Q 002880 429 LGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGE 485 (871)
Q Consensus 429 ~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~~~ 485 (871)
++.-|+||-+|||.+..... + + ...-.++-++||.+|||+|=||-.+..+
T Consensus 107 ~aRfiNHSC~PN~~~~~~~~-~-~-----~~~i~~~A~rdI~~GEELt~dY~~~~~~ 156 (166)
T 3f9x_A 107 LGRLINHSKCGNCQTKLHDI-D-G-----VPHLILIASRDIAAGEELLFDYGDRSKA 156 (166)
T ss_dssp SGGGCEECTTCSEEEEEEEE-T-T-----EEEEEEEESSCBCTTCBCEECCCCCCHH
T ss_pred hhheeecCCCCCeeEEEEEE-C-C-----eeEEEEEECCcCCCCCEEEEEcCCChhh
Confidence 44669999999998765432 2 3 3456678899999999999999765433
No 235
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.97 E-value=0.097 Score=49.16 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=41.9
Q ss_pred ceeecCCcccc--ccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCcceeEee
Q 002880 280 TSLDLSNRCIH--NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339 (871)
Q Consensus 280 ~~LdLS~N~I~--~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L~L~ 339 (871)
..++.|+++++ .+ |..+ -++|+.|+|++|+|+.++.. .+..+++|+.|+|+
T Consensus 11 ~~v~Cs~~~L~~~~v-P~~l----p~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL-PTAF----PVDTTELVLTGNNLTALPPG----LLDALPALRTAHLG 63 (130)
T ss_dssp TEEECCSSCCCTTTS-CSCC----CTTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECC
T ss_pred CEEEeCCCCCccccC-CCCC----CcCCCEEECCCCcCCccChh----hhhhccccCEEEec
Confidence 47899999998 66 5433 35799999999999998854 67889999999988
No 236
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=92.94 E-value=0.043 Score=50.76 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=35.7
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~ 483 (871)
.+++.|+||-+||+.+.. .+++ .--.++-++||.+|||+|=||-...
T Consensus 63 ~~~~~~NHsc~pN~~~~~---~~~~------~~~~~~A~rdI~~GeElt~~Y~~~~ 109 (119)
T 1n3j_A 63 GFGAIFNHSKDPNARHEL---TAGL------KRMRIFTIKPIAIGEEITISYGDDY 109 (119)
T ss_dssp SSHHHHHSCSSCCCEEEE---CSSS------SCEEEEECSCBCSSEEECCCCCCCC
T ss_pred CceeeeccCCCCCeeEEE---ECCC------eEEEEEEccccCCCCEEEEecCchh
Confidence 478999999999999764 2222 1234567999999999999997654
No 237
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.70 E-value=0.15 Score=55.88 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=87.3
Q ss_pred ccCCCCcEeeccCCccccHHHHHHHHhcCCCCCeeeCCCCcccccccccchhHHhhcCCCccccccccc-cccccccccc
Q 002880 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFT-INFGEWALGF 256 (871)
Q Consensus 178 ~~~p~L~~L~Ls~N~L~~~~~i~~~l~~L~~Lk~L~Ls~N~l~~~~~~~~~~~i~~~lp~Le~lnl~~t-~~~~~~~l~~ 256 (871)
..+..+..+.+..+.-. + ....+..+.+|+.+.+..+-- . +......++..|+.+.+.-+ ...+..
T Consensus 191 ~~~~~~~~~~~~~~~~~-i--~~~~f~~~~~l~~i~~~~~~~-~-----i~~~~f~~~~~L~~i~lp~~v~~I~~~---- 257 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKT-V--TAYGFSYGKNLKKITITSGVT-T-----LGDGAFYGMKALDEIAIPKNVTSIGSF---- 257 (379)
T ss_dssp CTTCCCSEEECCTTCCE-E--CTTTTTTCSSCSEEECCTTCC-E-----ECTTTTTTCSSCCEEEECTTCCEECTT----
T ss_pred cccccccccccccceeE-E--eecccccccccceeeecccee-E-----EccccccCCccceEEEcCCCccEeCcc----
Confidence 34556666665544322 1 124567788999999977632 2 12222334555544433211 000110
Q ss_pred cccccCCCCCCCccccCCcCCccceeecCCccccccccccCCCCCCCCcceEeccCCCCCCcchHHHHHHhcCCCCccee
Q 002880 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336 (871)
Q Consensus 257 ~~~~~~~~~~~~i~~~~~~l~~L~~LdLS~N~I~~l~p~~~~~~~l~~L~~LnLs~N~L~~l~~~~i~~~l~~lp~L~~L 336 (871)
.-..+.+|+.+.+..+ +..+....|. .+++|+.+.+.+|.+..++.. .+.+|++|+++
T Consensus 258 ---------------aF~~~~~l~~i~l~~~-i~~i~~~aF~--~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i 315 (379)
T 4h09_A 258 ---------------LLQNCTALKTLNFYAK-VKTVPYLLCS--GCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSV 315 (379)
T ss_dssp ---------------TTTTCTTCCEEEECCC-CSEECTTTTT--TCTTCCEEEECCTTCCEECTT----TTTTCTTCCEE
T ss_pred ---------------ccceeehhcccccccc-ceeccccccc--cccccccccccccccceehhh----hhcCCCCCCEE
Confidence 0123567888888654 6677567777 899999999999998876643 68899999998
Q ss_pred EeeCCCCCCchhhHHhhhCCCccccc
Q 002880 337 GVDIPGPLGESAIEILESLPTLCTLN 362 (871)
Q Consensus 337 ~L~iP~~l~~~~~~Il~~L~~L~~Ln 362 (871)
.| |..+..........|.+|+.++
T Consensus 316 ~l--p~~l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 316 TL--PTALKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp EC--CTTCCEECTTTTTTCTTCCCCC
T ss_pred Ec--CccccEEHHHHhhCCCCCCEEE
Confidence 86 4333322223355666666554
No 238
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=90.76 E-value=0.23 Score=51.11 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=37.9
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~ 482 (871)
.++.-|+||-+||+.+.+... ++ ..--.++-++||.+|||+|=||-..
T Consensus 145 n~aRfiNHSC~PN~~~~~~~~--~~-----~~~i~~~A~RdI~~GEELT~dY~~~ 192 (222)
T 3ope_A 145 NEARFINHSCDPNCEMQKWSV--NG-----VYRIGLYALKDMPAGTELTYDYNFH 192 (222)
T ss_dssp CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCBCEECTTSS
T ss_pred ccceeeccCCCCCeEeEEEEE--CC-----eEEEEEEECCccCCCCEEEEECCCc
Confidence 355679999999999887543 23 3456688899999999999999754
No 239
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=90.74 E-value=0.27 Score=51.48 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=39.0
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCCCChhhch
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRS 490 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~~~~~~r~ 490 (871)
..++-|+||-+||+.++.+ .++ --.++-++||.+|||+|-||....-....+.
T Consensus 175 ~~ar~iNHSC~PN~~~~~~---~~~-------~i~v~A~rdI~~GEElt~~Y~~~~~~~~~f~ 227 (247)
T 3rq4_A 175 GPAAFINHDCKPNCKFVPA---DGN-------AACVKVLRDIEPGDEVTCFYGEGFFGEKNEH 227 (247)
T ss_dssp SGGGGCEECSSCSEEEEEE---TTT-------EEEEEESSCBCTTCBCEECCCTTSSSGGGTT
T ss_pred chhhhcCCCCCCCEEEEEe---CCC-------EEEEEECCcCCCCCEEEEecCchhcCCCCCE
Confidence 4678999999999986653 222 3356789999999999999987654443333
No 240
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=90.01 E-value=0.29 Score=49.24 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=36.9
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~ 483 (871)
.+++-|+||-+||+.+..... +| ..--.++-++||.+|||+|=||-...
T Consensus 123 n~arfiNHSC~PN~~~~~~~~--~g-----~~~i~i~A~rdI~~GEELt~dY~~~~ 171 (192)
T 2w5y_A 123 NAARFINHSCEPNCYSRVINI--DG-----QKHIVIFAMRKIYRGEELTYDYKFPI 171 (192)
T ss_dssp CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCEEEECCCC--
T ss_pred ChhHhhccCCCCCEEEEEEEE--CC-----cEEEEEEECcccCCCCEEEEEcCCch
Confidence 456779999999999765432 33 33457888999999999999997654
No 241
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=89.83 E-value=0.38 Score=49.83 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=38.2
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~ 483 (871)
.++.-|+||-+||+.+..+.. .+ ..--.++-++||.+|||+|=||-...
T Consensus 164 n~aRfiNHSC~PN~~~~~~~~--~~-----~~~i~~~A~RdI~~GEELT~dY~~~~ 212 (232)
T 3ooi_A 164 NYARFMNHCCQPNCETQKWSV--NG-----DTRVGLFALSDIKAGTELTFNYNLEC 212 (232)
T ss_dssp CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCBCEECCTTCS
T ss_pred cccccccccCCCCeEEEEEEE--CC-----ceEEEEEECCccCCCCEEEEECCCCc
Confidence 455779999999999876543 23 34567888999999999999997543
No 242
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=89.01 E-value=0.37 Score=51.33 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=37.1
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~ 482 (871)
.++.-|+||-+||+.+..+.. . + ..--.+|-++||.+|||+|=||-+.
T Consensus 189 N~aRFiNHSC~PN~~~~~~~v-~-g-----~~ri~~fA~RdI~~GEELT~dY~~~ 236 (278)
T 3h6l_A 189 NCSRFMNHSCEPNCETQKWTV-N-G-----QLRVGFFTTKLVPSGSELTFDYQFQ 236 (278)
T ss_dssp CGGGGCEECSSCSEEEEEEEE-T-T-----EEEEEEEESSCBCTTCBCEECCTTT
T ss_pred ChhhhcccCCCCCceeEEEEe-C-C-----ceEEEEEECCccCCCCEEEEecCCC
Confidence 456779999999998765443 2 3 3455678899999999999999653
No 243
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=88.59 E-value=0.19 Score=59.48 Aligned_cols=102 Identities=13% Similarity=-0.022 Sum_probs=62.1
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHH----H
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIR----L 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~----~ 676 (871)
.+.+|..|+-.-..+-+.| ++++||. ..+- .+. . .-||+||..|..|.||.+.+..++..+ .
T Consensus 494 llsNKailalLw~l~p~hp-~LLpT~f-~~~~--~l~-~---------~~yV~KPi~gReG~nV~i~~~~~~~~~~~~~~ 559 (619)
T 2io8_A 494 IPGNKAILPILWSLFPHHR-YLLDTDF-TVND--ELV-K---------TGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGK 559 (619)
T ss_dssp TTTSTTHHHHHHHHSTTCT-TCCCEES-SCCH--HHH-H---------HCEEEEETTCCTTTTCEEECTTSCEEEECCCT
T ss_pred HhhhHHHHHHHHHhCCCCC-CCCCeee-cCCc--ccc-c---------CCEEEccCCCCCCCCEEEEeCCChhHhhcccc
Confidence 5788888888776553334 6666763 2221 111 1 349999999999999999976222111 1
Q ss_pred hccCCcccccccccccccCCceeeeeEEEEEeeecCcEEEEEcc----eEEEeecCC
Q 002880 677 METGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDV----FWVRLANNP 729 (871)
Q Consensus 677 ~~~~~~IvQkYI~~PlLi~grKFDlR~yVLvtS~~PL~vy~y~~----g~vR~a~~~ 729 (871)
...+++|.|+|++.|- ||= .|.+ +.+|++.+ .++|.....
T Consensus 560 y~~~~~IyQe~~~lp~------~d~-~~~~------iG~f~vgg~~aG~~~R~~~~~ 603 (619)
T 2io8_A 560 FAEQKNIYQQLWCLPK------VDG-KYIQ------VCTFTVGGNYGGTCLRGDESL 603 (619)
T ss_dssp TTTSCEEEEECCCCCE------ETT-EEEE------EEEEEETTEEEEEEEEEESSS
T ss_pred ccCCCeEEEEecCCCC------cCC-cceE------EEEEEECCEEEEEEEecCCCC
Confidence 1236789999999873 442 2222 23566443 567876543
No 244
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=88.31 E-value=0.33 Score=51.92 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=38.1
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~ 483 (871)
.+++-|+||-+|||.+.++ ..|.. ...-.++-++||.+|||+|-||=+..
T Consensus 239 n~ar~iNHsc~pN~~~~~~-~~~~~-----~~~~~~~a~r~I~~geElt~~Yg~~~ 288 (293)
T 1h3i_A 239 SLGHKANHSFTPNCIYDMF-VHPRF-----GPIKCIRTLRAVEADEELTVAYGYDH 288 (293)
T ss_dssp CCGGGSEEESSCSEEEEEE-EETTT-----EEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred cceeeeccCCCCCeEEEEE-EcCCC-----CcEEEEEECCccCCCCEEEEecCCCC
Confidence 3577899999999999886 33442 12226788999999999999996544
No 245
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=87.41 E-value=0.52 Score=50.70 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=38.3
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~ 483 (871)
.++.-|+||-+||+.+.+...- .+ +....--.++-++||.+|||+|=||-...
T Consensus 212 N~aRfiNHSC~PN~~~~~v~~~-~~--~~~~~~i~~~A~rdI~~GEELt~dY~~~~ 264 (299)
T 1mvh_A 212 DVSRFFNHSCSPNIAIYSAVRN-HG--FRTIYDLAFFAIKDIQPLEELTFDYAGAK 264 (299)
T ss_dssp CGGGGCEECSSCSEEEEEEESC-TT--CTTSCEEEEEESSCBCTTCBCEECCCTTS
T ss_pred ChhheEeecCCCCeEEEEEEee-cC--CCCceEEEEEEccCcCCCCEEEEEcCCcc
Confidence 4667799999999998765432 11 01123446788999999999999997544
No 246
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.52 E-value=0.55 Score=52.99 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=53.2
Q ss_pred HHHHHHHHHhheeecCcccccCCceeeeeccccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCccc
Q 002880 397 RVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECT 476 (871)
Q Consensus 397 ~Vl~~mW~y~~~Y~~~~~~~~~~~~~wy~~de~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~t 476 (871)
+++..+. +..+.+...+ ..++=.-+--.+|.|+||-.||+... |. ++ . -+++-++||++|||+|
T Consensus 174 ~~~~~~~--~N~f~i~~~~---~~~~g~~l~~~~s~~NHsC~PN~~~~---~~-~~------~-~~~~a~r~I~~GeEl~ 237 (429)
T 3qwp_A 174 EAFAKVI--CNSFTICNAE---MQEVGVGLYPSISLLNHSCDPNCSIV---FN-GP------H-LLLRAVRDIEVGEELT 237 (429)
T ss_dssp HHHHHHH--HHCEEEECTT---SCEEEEEECTTGGGCEECSSCSEEEE---EE-TT------E-EEEEECSCBCTTCEEE
T ss_pred HHHHHHH--hcCccccccc---cccceEEEchhhHhhCcCCCCCeEEE---Ee-CC------E-EEEEEeeeECCCCEEE
Confidence 4444443 3556665432 12221223346899999999999865 22 22 1 3467899999999999
Q ss_pred ccccCCCCChhhchhhcc
Q 002880 477 RDFLYGIGEDKQRSARLT 494 (871)
Q Consensus 477 rd~~~~~~~~~~r~~~l~ 494 (871)
=+|.....+...|...|.
T Consensus 238 isY~~~~~~~~~R~~~L~ 255 (429)
T 3qwp_A 238 ICYLDMLMTSEERRKQLR 255 (429)
T ss_dssp ECCSCSSCCHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHh
Confidence 999976666666766664
No 247
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=86.45 E-value=0.63 Score=49.30 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=35.9
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCCCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGE 485 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~~~ 485 (871)
..++-|+||-+||+.++. .... --.++-++||++|||+|-||....-.
T Consensus 204 ~~arfiNHSC~PN~~~~~---~~~~-------~i~i~A~RdI~~GEELt~~Y~~~~~~ 251 (273)
T 3s8p_A 204 GPAAFINHDCRPNCKFVS---TGRD-------TACVKALRDIEPGEEISCYYGDGFFG 251 (273)
T ss_dssp SGGGGCEECSSCSEEEEE---EETT-------EEEEEESSCBCTTCBCEECCCTTTTS
T ss_pred chHHhhCCCCCCCeEEEE---cCCC-------EEEEEECceeCCCCEEEEecCchhcC
Confidence 456889999999998641 1111 23578899999999999999865433
No 248
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=86.42 E-value=0.45 Score=56.47 Aligned_cols=81 Identities=12% Similarity=-0.040 Sum_probs=35.6
Q ss_pred cccccHHHHHHHHHhcCCCCcccceeccCCChhHHHhhhhhhhccCCCceEEecCCCCCCCCcEEEecChHHHHHH----
Q 002880 601 CLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRL---- 676 (871)
Q Consensus 601 ~lt~K~~L~~~l~~~~g~~~~lP~Tf~L~~el~~f~~~~~~~~~~~~~~~WIvKP~~~srG~GI~v~~~l~~i~~~---- 676 (871)
++.+|..|+-.=..+-++ +++++||.-+.. ... + ..||+||..|..|.||.+.+.-.++...
T Consensus 509 LlsNKaiLalLW~l~p~h-p~LLpt~f~~~~---~~~----~------~~yV~KPi~gReG~nV~I~~~~~~~~~~~~g~ 574 (652)
T 2vob_A 509 IPSNKAILPMIYHNHPEH-PAILKAEYELTD---ELR----K------HGYAKKPIVGRVGSNVIITSGDGVVHAESGGK 574 (652)
T ss_dssp TTTSTTHHHHHHHHCTTC-TTBCCEESSCCH---HHH----H------HCEEEEECC-----------------------
T ss_pred hhcCHHHHHHHHhcccCC-CCCCchhhcCCC---ccc----c------CCeEeccCCCCCCCCEEEEcCCchhhhhcccc
Confidence 567787777755444334 467777732221 111 0 3499999999999999998753332211
Q ss_pred hccCCcccccccccccccCC
Q 002880 677 METGPKICQKYIEFPALFQG 696 (871)
Q Consensus 677 ~~~~~~IvQkYI~~PlLi~g 696 (871)
...+++|+|+|++-|- ++|
T Consensus 575 y~~~~~IyQe~~~lp~-f~~ 593 (652)
T 2vob_A 575 YGKRNMIYQQLFELKK-QDD 593 (652)
T ss_dssp ----CEEEEECCC--C-BTT
T ss_pred cCCCCeEEEecccCCc-cCC
Confidence 1246899999999773 443
No 249
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=86.41 E-value=0.57 Score=50.15 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=38.0
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~ 483 (871)
.++.-|+||-+||+.+.+...-. + ..--.++-++||.+|||+|-||-...
T Consensus 204 N~arfiNHSC~PN~~~~~~~~~~-~-----~~~i~~~A~rdI~~GEELt~dY~~~~ 253 (290)
T 3bo5_A 204 NIGRFLNHSCEPNLLMIPVRIDS-M-----VPKLALFAAKDIVPEEELSYDYSGRY 253 (290)
T ss_dssp CGGGGCEECSSCSEEEEEEESSS-S-----SCEEEEEESSCBCTTCEEEECTTSCT
T ss_pred CchheeeecCCCCEEEEEEEeCC-C-----ceEEEEEEccccCCCCEEEEECCCcc
Confidence 56678999999999988754321 1 12346788999999999999997543
No 250
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=86.38 E-value=0.43 Score=51.44 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=36.9
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI 483 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~ 483 (871)
.++.-|+||-+||+.+.+...-- .+....--.+|-++||.+|||+|=||-.+.
T Consensus 219 N~arfiNHSC~PN~~~~~~~~~~---~~~~~~~i~~~A~rdI~~GeELt~dY~~~~ 271 (302)
T 1ml9_A 219 GPTRFINHSCDPNMAIFARVGDH---ADKHIHDLALFAIKDIPKGTELTFDYVNGL 271 (302)
T ss_dssp CGGGGCEECSSCSEEEEEEESSG---GGGGGCEEEEEESSCBCTTCEEEECTTC--
T ss_pred CHHHhcccCCCCCeeEEEEEecc---CCCCceEEEEEECCCcCCCCEEEEEECCCc
Confidence 56777999999999976533110 011123456888999999999999997654
No 251
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=85.46 E-value=0.52 Score=53.37 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=45.5
Q ss_pred ccccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCCCCChhhchhhcc-ccc
Q 002880 426 MDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLT-AWF 497 (871)
Q Consensus 426 ~de~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~~~~~~~r~~~l~-~w~ 497 (871)
+--.+|.++||-.||+... |. ++ . -.++.++||.+|||+|=+|.....+...|...|. .|.
T Consensus 198 l~p~~s~~NHsC~PN~~~~---~~-~~------~-~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~~ 259 (433)
T 3qww_A 198 IFPDVALMNHSCCPNVIVT---YK-GT------L-AEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYF 259 (433)
T ss_dssp ECTTGGGSEECSSCSEEEE---EE-TT------E-EEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHHS
T ss_pred ecccccccCCCCCCCceEE---Ec-CC------E-EEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcCC
Confidence 3457899999999999854 22 22 1 2688999999999999999976666666766654 353
No 252
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=84.93 E-value=0.64 Score=50.04 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=37.7
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccCC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~~ 482 (871)
.++.-|+||-+||+.+.+.+.--.. ....--.++-++||.+|||+|=||-..
T Consensus 214 N~aRfiNHSC~PN~~~~~v~~~~~d---~~~~~i~~~A~rdI~~GEELt~dY~~~ 265 (300)
T 2r3a_A 214 NVSHFVNHSCDPNLQVFNVFIDNLD---TRLPRIALFSTRTINAGEELTFDYQMK 265 (300)
T ss_dssp CGGGGCEECSSCSEEEEEEESSCCC---TTSCEEEEEESSCBCTTCEEEECGGGS
T ss_pred ChHHheecCCCCCEEEEEEEeccCC---CCceEEEEEEccCCCCCCEEEEECCCC
Confidence 4667899999999998765432110 012234578899999999999999754
No 253
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=84.92 E-value=0.46 Score=54.70 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=52.4
Q ss_pred hheeecCcccccCCceeeeeccccccccccCCCCCeeEeeeeecCCCC--CCC---ceEEEEEeecccCCCCCccccccc
Q 002880 406 LMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGK--LSS---AVSFSILWPIQNVYKRDECTRDFL 480 (871)
Q Consensus 406 ~~~Y~~~~~~~~~~~~~wy~~de~gs~i~hs~~pn~~~~pf~~~~~~~--~~~---~~~ys~~wp~~~~~~g~~~trd~~ 480 (871)
+..+.+...+. ..++=.-+--.+|.|+||-.||+.+. |..... ..+ ...--.++.++||++|||+|=+|.
T Consensus 179 ~N~f~i~~~~g--~~~~g~gl~p~~s~~NHSC~PN~~~~---~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~ 253 (490)
T 3n71_A 179 CNGFTLSDQRG--LQAVGVGIFPNLGLVNHDCWPNCTVI---FNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYI 253 (490)
T ss_dssp TTEEEEECTTS--CSEEEEEECTTGGGCEECSSCSEEEE---EECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSS
T ss_pred ccCcccccCCC--CccceEEEchhhhhcccCCCCCeeEE---ecCCccccccccccccceEEEEECCCCCCCCEEEEeec
Confidence 35566654321 12222234457899999999999844 322210 000 011456788999999999999999
Q ss_pred CCCCChhhchhhcc
Q 002880 481 YGIGEDKQRSARLT 494 (871)
Q Consensus 481 ~~~~~~~~r~~~l~ 494 (871)
....+...|...|.
T Consensus 254 ~~~~~~~~R~~~L~ 267 (490)
T 3n71_A 254 DFLHLSEERRRQLK 267 (490)
T ss_dssp CSCSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 76666666766555
No 254
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=84.83 E-value=0.76 Score=49.12 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=37.6
Q ss_pred ccccccccCCCCCeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccC
Q 002880 428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY 481 (871)
Q Consensus 428 e~gs~i~hs~~pn~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~ 481 (871)
.++.-|+||-+||+.+...+..-.. ....--.++-++||.+|||+|=||-.
T Consensus 215 N~aRFiNHSC~PN~~~~~v~~~~~d---~~~~~i~~~A~RdI~~GEELT~dYg~ 265 (287)
T 3hna_A 215 NVSRFINHHCEPNLVPVRVFMAHQD---LRFPRIAFFSTRLIEAGEQLGFDYGE 265 (287)
T ss_dssp CGGGGCEECSSCSEEEEEEESSCCC---TTCCEEEEEESSCBCTTCBCEECCCH
T ss_pred CchheeeecCCCCceeEEEEEecCC---CCceeEEEEEcceeCCCCeEEEeCCC
Confidence 5677789999999998765543221 11334567789999999999999963
No 255
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=80.64 E-value=1.6 Score=41.89 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=35.7
Q ss_pred eeecccc-------ccccccCCCC---CeeEeeeeecCCCCCCCceEEEEEeecccCCCCCcccccccC
Q 002880 423 WYVMDEL-------GSAVRHSDEP---NFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY 481 (871)
Q Consensus 423 wy~~de~-------gs~i~hs~~p---n~~~~pf~~~~~~~~~~~~~ys~~wp~~~~~~g~~~trd~~~ 481 (871)
||+.|-. ..-|+||-+| |+.++. -++ --.++-++||.+|||+|=||-.
T Consensus 86 ~~~IDa~~~~~gn~~RfINhSc~p~eqNl~~~~----~~~-------~I~~~A~RdI~~GEEL~~dY~~ 143 (149)
T 2qpw_A 86 WMCIDATDPEKGNWLRYVNWACSGEEQNLFPLE----INR-------AIYYKTLKPIAPGEELLVWYNG 143 (149)
T ss_dssp EEEEECSSGGGSCGGGGCEECBTTBTCCEEEEE----ETT-------EEEEEESSCBCTTCBCEECCCC
T ss_pred eEEEeCCCCCCCcceeeeeccCChhhcCEEEEE----ECC-------EEEEEEccCCCCCCEEEEccCC
Confidence 6766654 4568999999 988642 123 2246789999999999999964
No 256
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=28.23 E-value=25 Score=35.76 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=29.9
Q ss_pred ceEEecCCCC-----CCCCcEEE-ecChHHHHHHhc--------------cCCcccccccc
Q 002880 649 NLWILKPWNM-----ARTIDTSV-TDDLSAVIRLME--------------TGPKICQKYIE 689 (871)
Q Consensus 649 ~~WIvKP~~~-----srG~GI~v-~~~l~~i~~~~~--------------~~~~IvQkYI~ 689 (871)
-.+++||..+ +.|.|+.+ +++.+++....+ ....+||+||.
T Consensus 57 ~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~ 117 (238)
T 1wr2_A 57 YPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLK 117 (238)
T ss_dssp SSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCC
T ss_pred CCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCC
Confidence 4679999987 55678887 688777654331 15689999997
Done!