RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 002880
(871 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 137 bits (346), Expect = 3e-35
Identities = 58/332 (17%), Positives = 112/332 (33%), Gaps = 48/332 (14%)
Query: 550 VEEFLTRTEFV-ITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHL 608
+ L ++ + + +++ + Q VN + L K L
Sbjct: 21 AKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASL 80
Query: 609 AETVQKAHGSPEWLQ----------PTYNLETH-----------------LPQLIGDYYV 641
+ ++ + E + +
Sbjct: 81 VKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNK 140
Query: 642 RKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPK--ICQKYIEFPALFQ--GR 697
+K + N+WI K + A+ ++ D + ++ ++ + + QKY+E P L + R
Sbjct: 141 KKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHR 200
Query: 698 KFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVM--------NY 749
KFD+R VLV + I+L +R ++ PYS + +H T NY
Sbjct: 201 KFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQ--DMTSHLTNHCIQKEHSKNY 256
Query: 750 GRR--FNHMNTPDFVRGFEAEHQVKWLE-IHQRVKNTIRSVFEAAA-VAHPEMHSSKSRA 805
GR N M +F + + I ++K IR + S
Sbjct: 257 GRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQ 316
Query: 806 MYGVDIMLDSSFQPKLLEVTYCPDCTRACKYD 837
++G D M+D + + L+EV P C + +
Sbjct: 317 LFGFDFMVDKNLKVWLIEVNGAPACAQKLYAE 348
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 6e-10
Identities = 62/492 (12%), Positives = 146/492 (29%), Gaps = 130/492 (26%)
Query: 467 QNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQS----YFINEYEKHCQKLQFKSLSY 522
+++ ++E D + + + RL + Q F+ E + K +
Sbjct: 43 KSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 523 TPTKSSNTESLHRSDGCASRVYTDI-PYVEEFLTRTEFVIT-----TEPKDADIIWTSLQ 576
+ S ++ R+Y D + + ++R + + E + A +
Sbjct: 101 EQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV----- 153
Query: 577 VDEDM----KT---ATGITDQQYVNQFPF-------------ESCLVMKHHL-----AET 611
+ + + KT + + F E+ L M L
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 612 VQKAHGSPEWLQPTYNLETHLPQLIGD-YYVRKRDGLNNLWILKPWNM----ARTI---- 662
++ S ++++ L +L+ Y L N+ K WN + +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 663 DTSVTDDLSA----VIRLMETGP--------KICQKYIEFPALFQGRKFDLRYIVLVRSM 710
VTD LSA I L + KY++ DL V +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP------QDLP--REVLTT 325
Query: 711 DPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEA--- 767
+P + + + + + D + T++ N + ++ + F+
Sbjct: 326 NPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSV 380
Query: 768 -EHQVK---------WLEIHQRVKNTIRSVFEAAAVAHPEMHSSKSRAMYGV-DIMLDSS 816
W ++ + + + ++ E +S + I L+
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--EKQPKEST--ISIPSIYLELK 436
Query: 817 FQP--------KLLEVTYCPDCTRACKYDTEALVTGEVVKGAD--FFNYV---------- 856
+ +++ Y +D++ L+ + D F++++
Sbjct: 437 VKLENEYALHRSIVD-HY----NIPKTFDSDDLIPPYL----DQYFYSHIGHHLKNIEHP 487
Query: 857 -----FGCLFLN 863
F +FL+
Sbjct: 488 ERMTLFRMVFLD 499
Score = 57.6 bits (138), Expect = 2e-08
Identities = 119/737 (16%), Positives = 214/737 (29%), Gaps = 241/737 (32%)
Query: 113 DLD-TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDML 171
+ D D++ D K +L +K ++ I+ S+ DA G L
Sbjct: 32 NFDCKDVQ--DMPKSIL----SKEEIDHIIMSK------------------DAVSGTLRL 67
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
L + E V+ V+EV + N + L +P+ +
Sbjct: 68 FWT-------------LLSKQEEMVQKFVEEVLR-INYKFLM---SPIKTEQ-------- 102
Query: 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN 291
Q +Y + + +V+ K N S R +P + + +
Sbjct: 103 RQPSMMTRMYIEQRDRLYND------NQVFAKYNVS----RLQPYLKLR------QALLE 146
Query: 292 LVNKAFSPAEMPSLSHLNIRGNP------LEQNSVRELLEVLKGFPC----LQSLG-VDI 340
L PA+ ++ I G + + +V L +L +
Sbjct: 147 L-----RPAK-----NVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWL-NLKNCNS 194
Query: 341 PGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQP------- 393
P E+ +E+L+ L N + S K I S +Q L +P
Sbjct: 195 P----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLV 249
Query: 394 LAD----RVLSAMWLY---LMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPF 446
L + + +A L L+T R V D L +A +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQ-----------VTDFLSAATTTHISLDHHSMTL 298
Query: 447 LFMPEGK--LSSAVSFSI--LWPIQNVYKRDECTRDFLY--GIGE-DKQRSARLTAWFHT 499
E K L + L P R+ T + I E + A W H
Sbjct: 299 T-PDEVKSLLLKYLDCRPQDL-P------REVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 500 PQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEF 559
+K ++ SL L ++ +++
Sbjct: 351 -------NCDKLTTIIE-SSL----------NVLEPAE--YRKMFDR------------L 378
Query: 560 VITTEPKDADI-------IWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETV 612
+ P A I IW + + M VN+ + LV K T+
Sbjct: 379 SVF--PPSAHIPTILLSLIWFDVIKSDVM---------VVVNKL-HKYSLVEKQPKESTI 426
Query: 613 QKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSA 672
+ LE + +L +Y + + I+ +N+ +T D +DDL
Sbjct: 427 S-IPS----IY----LELKV-KLENEYALHRS-------IVDHYNIPKTFD---SDDLIP 466
Query: 673 VIR-----------LMETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVF 721
L ++ F +F D R++ +I
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHP--ERMTLFRMVF----LDFRFL-------EQKIRHDSTA 513
Query: 722 WVRLANNPYSL--DKHSFFEYETHFTVMN--YGRRFNHMNTPDFVRGFEAE-HQVKWLEI 776
W N S+ Y+ + + Y R N + DF+ E K+ ++
Sbjct: 514 W----NASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICSKYTDL 567
Query: 777 HQR-VKNTIRSVFEAAA 792
+ + ++FE A
Sbjct: 568 LRIALMAEDEAIFEEAH 584
Score = 53.3 bits (127), Expect = 3e-07
Identities = 46/271 (16%), Positives = 93/271 (34%), Gaps = 74/271 (27%)
Query: 544 YTDIPYVEEFLTRTEFVITTEPKD-ADI---IWTSLQVDEDMKTATGITDQQYVNQFPFE 599
Y DI + F FV + KD D+ I + ++D + + ++ + F
Sbjct: 18 YKDI--LSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FW 69
Query: 600 SCLVMKHHLAETVQKAHGSP-----EWLQPTYNLETHLPQLIGDYYVRKRDGL-NNLWIL 653
L+ K E VQK ++L E P ++ Y+ +RD L N+ +
Sbjct: 70 -TLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 654 KPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIEFPALFQGRKFDLRYIVL------- 706
+N++R L ++L + AL + R + +++
Sbjct: 127 AKYNVSR---------LQPYLKLRQ-------------ALLELR--PAKNVLIDGVLGSG 162
Query: 707 --------VRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNT 758
S +FW+ L N + TV+ ++ +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKN------------CNSPETVLEMLQKLLYQID 210
Query: 759 PDFVRGFEAEHQVKWLEIHQRVKNTIRSVFE 789
P++ + +K L IH ++ +R + +
Sbjct: 211 PNWTSRSDHSSNIK-LRIHS-IQAELRRLLK 239
Score = 36.0 bits (82), Expect = 0.066
Identities = 42/262 (16%), Positives = 83/262 (31%), Gaps = 66/262 (25%)
Query: 1 MSSNSNRIETYEDFVKVHGVLLAASGLPQSL-------HRQLFQKLTTETFDAGSYFKIE 53
S+ RI + + ++ LL + L + + + F+ KI
Sbjct: 220 SSNIKLRIHSIQAELRR---LLKSKPYENCLLVLLNVQNAKAW-----NAFNLSC--KIL 269
Query: 54 VCEDGRQRRLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQL--------QEVPGLAQRMA 105
+ R ++ V D S +++ L H+ T + S L Q++P
Sbjct: 270 LTT--RFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 106 SLMCVDTDL--DTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELED 163
+ ++ + + H N K + I+ES ++ LE
Sbjct: 327 PRRL---SIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLNV-------------LEP 368
Query: 164 ADIGDDMLLSLNLSSKFPD-----LQALSL--CGNKLETVEIIVQEVTKLKNLRALWLNN 216
A+ M L++ FP LSL V ++V ++ K +L
Sbjct: 369 AEY-RKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKE 423
Query: 217 NPV------LKKCDHCMEDAIL 232
+ + L+ + L
Sbjct: 424 STISIPSIYLELKVKLENEYAL 445
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 7e-10
Identities = 80/514 (15%), Positives = 167/514 (32%), Gaps = 173/514 (33%)
Query: 298 SPAEMPS--LSHLNIRGNPLEQNSVRELLE-VLKGF--PCLQSLGVDIPGPLGESAIEIL 352
+PAE+ L +++ P + ++L L F L+ G DI + +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GNDI-----HA---LA 105
Query: 353 ESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMW--------- 403
L L + K +I + + R+ A +P + SA++
Sbjct: 106 AKLLQ-------ENDTTLVKTKELIKNYITARI---MAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 404 LYLM-------------------TYRLANEEKIDETSVWYVMDELGSAVRHSDEPN---- 440
L + TY + + I ++ + L +R + +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA-----ETLSELIRTTLDAEKVFT 210
Query: 441 --FRVAPFLFMPEGK------LSSAVSFSILWPIQNV-Y----KRDECT----RDFLYGI 483
+ +L P LS +S ++ IQ Y K T R +L G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 484 ---GEDKQRSARLTAWFHTPQSYFINEYE---------KHCQKLQFKSLSYTPTKSSNTE 531
+ +A A + +S+F++ + C + + + S P S +
Sbjct: 271 TGHSQGLV-TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE-AYPNTSLPP--SILED 326
Query: 532 SLHRSDGCAS---RVYTDIPY--VEEFLTRTE-------------------FVITTEPKD 567
SL ++G S + +++ V++++ +T V++ P+
Sbjct: 327 SLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 568 ADIIWTSLQVDEDMKTATGITDQ----------QYVNQF-----PFESCLVMKHHLAETV 612
+ +L K +G+ DQ ++ N+F PF S H L
Sbjct: 386 LYGLNLTL---RKAKAPSGL-DQSRIPFSERKLKFSNRFLPVASPFHS-----HLLVPAS 436
Query: 613 QKAHGSPEWLQPTYNLETHLPQL-IGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLS 671
+ L N+ + + I Y DG ++L R + S+++ +
Sbjct: 437 DLI---NKDLVK-NNVSFNAKDIQIPVYDT--FDG-SDL---------RVLSGSISERI- 479
Query: 672 AVIRLMETGPKICQKYIEFPALFQGRKFDLRYIV 705
+ I + +++ +F +I+
Sbjct: 480 --VDC------IIRLPVKWETT---TQFKATHIL 502
Score = 53.1 bits (127), Expect = 4e-07
Identities = 84/501 (16%), Positives = 156/501 (31%), Gaps = 175/501 (34%)
Query: 12 EDFVK---VHGV---LLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVL 65
+++ +H + LL + ++L + +Y +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIK----------NYITARIMAK-------- 134
Query: 66 DSQSMPKESNVFLVDHAWT--FRL----------SDAFSQLQE--------VPGLAQRMA 105
+ K+SN L +L D F +L++ V L + A
Sbjct: 135 --RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 106 SLM--CVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELED 163
+ + T LD + + G +ILE WLE
Sbjct: 193 ETLSELIRTTLDAE---------KVFTQGL-----NILE---------------WLENPS 223
Query: 164 ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKL--KNLRALWLNNNPVLK 221
D LLS+ +S P + + L ++ ++ LR LK
Sbjct: 224 NTPDKDYLLSIPIS--CPLIGVIQLAH------YVVTAKLLGFTPGELR-------SYLK 268
Query: 222 KCDHCMED----AILQGCPKLEIYNSNF----TINFGEWALGF-CGEVYDKDNPSSLCLR 272
+ + E + + T+ F + +G C E Y + L
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF--F-IGVRCYEAYPNTSLPPSILE 325
Query: 273 D---------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVREL 323
D P+ S++ +L+ + + VNK + +P+ + I L N + L
Sbjct: 326 DSLENNEGVPSPMLSIS--NLTQEQVQDYVNKT--NSHLPAGKQVEI---SL-VNGAKNL 377
Query: 324 LEVLKGFPCLQSL-GVDI--------PG------PLGESAIEILES-LPTLCTLNGVTA- 366
V+ G P QSL G+++ G P E ++ LP V +
Sbjct: 378 --VVSGPP--QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-------VASP 426
Query: 367 --SKILEEGKHVIDSMLQPRLPEWSADQ---PLAD-------RVLSAMWLYLMTYRLANE 414
S +L +I+ L ++A P+ D RVLS ++ R+ +
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS----ISERIVDC 482
Query: 415 --------EKIDETSVWYVMD 427
E + +++D
Sbjct: 483 IIRLPVKWETTTQFKATHILD 503
Score = 46.6 bits (110), Expect = 4e-05
Identities = 76/439 (17%), Positives = 123/439 (28%), Gaps = 162/439 (36%)
Query: 9 ETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVL-DS 67
+TY V L+ S + +L T DA F G L +
Sbjct: 178 QTYHVLVGD---LIKFSA-------ETLSELIRTTLDAEKVF-----TQGLNILEWLENP 222
Query: 68 QSMPKESNVFLVDHAWTFRLSDAFSQLQEVP--GLAQRMAS--LMCVDTDLDTDIEEVDA 123
+ P + +L LS S P G+ Q +A + E
Sbjct: 223 SNTPDKD--YL--------LSIPIS----CPLIGVIQ-LAHYVVTAKLLGFTPG-ELRSY 266
Query: 124 VKGVLHENGTKSNVEDIL-----------ESEIHNATEKGDGTVKWL------------- 159
+KG + + ++ ES + + + L
Sbjct: 267 LKGAT------GHSQGLVTAVAIAETDSWESFFVSVRK----AITVLFFIGVRCYEAYPN 316
Query: 160 -ELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L + + D SL + P LS+ E V+ V + N
Sbjct: 317 TSLPPSILED----SLENNEGVPSPM-LSISNLTQEQVQDYVNKT-------------NS 358
Query: 219 VLKKCDHCMEDAILQGCPKLEI--YNS--NFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
L +EI N N + G P SL
Sbjct: 359 HLPAGKQ------------VEISLVNGAKNLVV---------SG------PPQSLY---- 387
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVR---ELLEVLKGF- 330
L+L+ R KA +P S L+ P + ++ L V F
Sbjct: 388 ------GLNLTLR-------KAKAP------SGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 331 -PCLQSLGVDIPGPLGESAIEILES---LPTLCTLNG----VTASKILEEGKHVIDSMLQ 382
L I L ++ + +P T +G V + I E ++D ++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER---IVDCII- 484
Query: 383 PRLP-EW-SADQPLADRVL 399
RLP +W + Q A +L
Sbjct: 485 -RLPVKWETTTQFKATHIL 502
Score = 41.6 bits (97), Expect = 0.001
Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 43/152 (28%)
Query: 4 NSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRL 63
N + + V V SG PQSL+ L L K + Q R
Sbjct: 372 NGAK-----NLV----V----SGPPQSLYG-LNLTLR----------KAKAPSGLDQSR- 406
Query: 64 VLDSQSMPKESNVFL-VD---HAWTFRLSDAFSQLQE---VPGLAQRMASLMC-V-DTDL 114
+ S+ K SN FL V H + L A + + ++ + V DT
Sbjct: 407 IPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 115 DTDIEEVDAVKGVLHENGTKSNVEDILESEIH 146
+D+ + + ++ V+ I+ +
Sbjct: 465 GSDLRVLSG-------SISERIVDCIIRLPVK 489
Score = 41.2 bits (96), Expect = 0.002
Identities = 46/247 (18%), Positives = 78/247 (31%), Gaps = 73/247 (29%)
Query: 466 IQNVYKR-DECTRDFLYG--IGE-DKQRSARLTAWFHTPQSYFINE-YEKHCQKLQFKSL 520
Q+V+ R D +D YG I + LT F + I E Y + F++
Sbjct: 1642 AQDVWNRADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKRIRENY----SAMIFET- 1695
Query: 521 SYTPTKSSNTESLHRSDGCASRVYT-DIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDE 579
TE + + S YT + L+ T+F T+P A + E
Sbjct: 1696 --IVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQF---TQP--A-LTLMEKAAFE 1745
Query: 580 DMKTATGITDQQYV---------------NQFPFESC--LVMKHHLAETVQKAHGSPEWL 622
D+K+ I + ES +V + T+Q A
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV--FYRGMTMQVA------- 1796
Query: 623 QPTYNLETHLPQLIGDYYVRKRDGLNNLWI--LKPWNMARTIDTSVTDDLSAVIRLM--E 678
+P R G +N + + P +A + + L V+ +
Sbjct: 1797 ---------VP--------RDELGRSNYGMIAINPGRVAASFS---QEALQYVVERVGKR 1836
Query: 679 TGPKICQ 685
TG + +
Sbjct: 1837 TG-WLVE 1842
Score = 37.0 bits (85), Expect = 0.033
Identities = 33/193 (17%), Positives = 54/193 (27%), Gaps = 65/193 (33%)
Query: 615 AHGSPE--WLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSA 672
+HGS E L PT QL ++ N + +P T + D+ +
Sbjct: 12 SHGSLEHVLLVPT-ASFFIASQL--------QEQFNK-ILPEP-----TEGFAADDEPTT 56
Query: 673 VIRLMETGPKICQKYIEFPA-LFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYS 731
L K++ + + L + K VL L F + L N
Sbjct: 57 PAEL-------VGKFLGYVSSLVEPSKVGQFDQVLNLC---LTEFENCY----LEGN--- 99
Query: 732 LDKHSFFEYETHFTVMNYGRRFNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFEAA 791
D H+ E+ + + K I++ A
Sbjct: 100 -DIHAL------------------------AAKLLQENDTTLV----KTKELIKNYITAR 130
Query: 792 AVA-HPEMHSSKS 803
+A P S S
Sbjct: 131 IMAKRPFDKKSNS 143
Score = 28.9 bits (64), Expect = 9.5
Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 28/114 (24%)
Query: 344 LGESAIEILESLPTLCT-LNGVTASKILEEG--KHVIDSMLQPRLPEWSADQPLADRVLS 400
G S ++I+ + P T G K + E + ++++ +L + + + S
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 401 AMWLYLMTYRLANEEKIDET------------SVWYVMDELGSAVR------HS 436
+ + + + T + + + G HS
Sbjct: 1717 YTF-------RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 56.9 bits (138), Expect = 2e-08
Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 43/182 (23%)
Query: 171 LLSLNLS-------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L++ +L+ L L + +ET + ++ L +L++L L+ N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 218 PVLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
++ + CP+LE + + + +
Sbjct: 387 EP-----LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ------------------- 422
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
L + L+LS+ + + F +P+L HLN++GN + ++ + L+ L+
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLE 479
Query: 335 SL 336
L
Sbjct: 480 IL 481
Score = 48.9 bits (117), Expect = 6e-06
Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 50/210 (23%)
Query: 170 MLLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNN 216
L SLNLS + P L+ L L +L+ Q L L+ L L++
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV--KDAQSPFQNLHLLKVLNLSH 434
Query: 217 NPVLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
+ + + + G P L+ + ++F +
Sbjct: 435 SLL-----DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------------- 474
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
L + L LS + ++ AF+ + ++H+++ N L +S+ L
Sbjct: 475 --LGRLEILVLSFCDLSSIDQHAFTS--LKMMNHVDLSHNRLTSSSIEA-------LSHL 523
Query: 334 QSLGVDIPG-PLGESAIEILESLPTLCTLN 362
+ + +++ + +L L T+N
Sbjct: 524 KGIYLNLASNHISIILPSLLPILSQQRTIN 553
Score = 46.2 bits (110), Expect = 4e-05
Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 46/162 (28%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L S S+ +L L L ++ I L L L NP
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLTANP 92
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
++ M + L G L+ +I + L
Sbjct: 93 LIF-----MAETALSGPKALKHLFFIQTGISSI-----------------DFIPL----H 126
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
+++ SL L + I ++ P L L+ + N +
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFP--TEKLKVLDFQNNAIH 166
Score = 45.4 bits (108), Expect = 7e-05
Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 38/161 (23%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
+ L N L I ++L NL L L + + + Q +L+
Sbjct: 32 PNSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYW-----IHEDTFQSQHRLD 84
Query: 240 I----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295
N + ++L +++ L I ++
Sbjct: 85 TLVLTANPLIFM-----------------AETAL----SGPKALKHLFFIQTGISSIDFI 123
Query: 296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+L L + N + L L+ L
Sbjct: 124 PLHN--QKTLESLYLGSNHISSIK----LPKGFPTEKLKVL 158
Score = 43.5 bits (103), Expect = 3e-04
Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 48/207 (23%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L L L++L L N + + I + + + L+ L NN
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS--IKLPKGFPTEKLKVLDFQNNA 164
Query: 219 VLKKCDHCMEDAILQGCPKLEIY----NSNF--TINFGEWALGFCGEVYDKDNPSSLC-- 270
+ H + + + N N I G + + + L
Sbjct: 165 I-----HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 271 --LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP-------------- 314
L++ +QS+ + ++ F S+ +N++ +
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279
Query: 315 -----LEQNSVRELLEVLKGFPCLQSL 336
L + EL L G L+ L
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKL 306
Score = 42.3 bits (100), Expect = 6e-04
Identities = 33/184 (17%), Positives = 50/184 (27%), Gaps = 50/184 (27%)
Query: 171 LLSLNLS--------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
SLN S L + E + V E ++ ++ L
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263
Query: 217 NPVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
+ + L+ + PS L
Sbjct: 264 HYFFN-----ISSNTFHCFSGLQELDLTATHLSEL------------------PSGL--- 297
Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
L ++ L LS NL + S PSL+HL+I+GN LE L
Sbjct: 298 -VGLSTLKKLVLSANKFENLCQISAS--NFPSLTHLSIKGNTKRLELGTGCLENL---EN 351
Query: 333 LQSL 336
L+ L
Sbjct: 352 LREL 355
Score = 42.3 bits (100), Expect = 7e-04
Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 63/184 (34%)
Query: 171 LLSLNLS-------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L+L+ L+ L+L + L+ Q L L+ L L N
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI--SSEQLFDGLPALQHLNLQGN 459
Query: 218 PVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
K + ++ LQ +LEI + +I+ +
Sbjct: 460 H-FPKGNIQKTNS-LQTLGRLEILVLSFCDLSSID-----------------QHAF---- 496
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSP---------------------AEMPSLSHLNIRG 312
L+ + +DLS+ + + +A S + +N+R
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556
Query: 313 NPLE 316
NPL+
Sbjct: 557 NPLD 560
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 54.9 bits (132), Expect = 5e-08
Identities = 47/214 (21%), Positives = 81/214 (37%), Gaps = 29/214 (13%)
Query: 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRA 211
V+ ++L ++ I L + S+ LQ LSL G +L IV + K NL
Sbjct: 91 SPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVR 146
Query: 212 LWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL 271
L L+ + ++ +L C +L+ N L +C +
Sbjct: 147 LNLSGCSGFS--EFALQ-TLLSSCSRLDELN-----------LSWCFDF---TEKHVQVA 189
Query: 272 RDRPLQSVTSLDLSNRCIHNLVNKAFSP--AEMPSLSHLNIRGNP-LEQNSVRELLEVLK 328
+++T L+LS NL S P+L HL++ + L+ + +E +
Sbjct: 190 VAHVSETITQLNLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--- 245
Query: 329 GFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362
LQ L + + + L +PTL TL
Sbjct: 246 -LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278
Score = 51.8 bits (124), Expect = 4e-07
Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 30/203 (14%)
Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L LE + D ++ +L +K +L L+L G + + ++ L L L+
Sbjct: 123 LSLEGLRLSDPIVNTL---AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179
Query: 219 VLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQS 278
+ ++ A+ + +N G+ + S L R +
Sbjct: 180 DFT--EKHVQVAVAHVSETIT------QLNLS----GYRKNLQK----SDLSTLVRRCPN 223
Query: 279 VTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNP-LEQNSVRELLEVLKGFPCLQSL 336
+ LDLS L N F ++ L HL++ + ++ EL E+ P L++L
Sbjct: 224 LVHLDLS-DS-VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI----PTLKTL 277
Query: 337 GVDIPGPLGESAIEIL-ESLPTL 358
+ G + + +++L E+LP L
Sbjct: 278 --QVFGIVPDGTLQLLKEALPHL 298
Score = 34.5 bits (79), Expect = 0.14
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 27/135 (20%)
Query: 135 SNVEDILESEIHNATEKGDGTVKWLELED--ADIGDDMLLSLNLSSKFPDLQALSLCGNK 192
S D E + A T+ L L ++ L +L + P+L L L +
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSDSV 233
Query: 193 LETVEIIVQEVTKLKNLRALWLNNNP--------VLKKC-------------DHCMEDAI 231
+ QE +L L+ L L+ L + D ++ +
Sbjct: 234 MLK-NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ-LL 291
Query: 232 LQGCPKLEIYNSNFT 246
+ P L+I S+FT
Sbjct: 292 KEALPHLQINCSHFT 306
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 55.0 bits (133), Expect = 8e-08
Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 38/181 (20%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+ + LS + P LQ L L L+ V+ L+NL L L+NN
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491
Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ + D +L+G KLE + ++N + G
Sbjct: 492 -IANIN----DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG------------ 534
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L + L+L + + + F + L +++ N L N++ V L+S
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKD--LFELKIIDLGLNNL--NTLPA--SVFNNQVSLKS 588
Query: 336 L 336
L
Sbjct: 589 L 589
Score = 51.5 bits (124), Expect = 1e-06
Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 50/212 (23%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L L+LS + P L+ L N ++ + + L N+R L L +
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSF 307
Query: 219 VLKKCDHC----MEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCL 271
+ ++D Q LE + +++ +
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI----------------KSNMFT- 350
Query: 272 RDRPLQSVTSLDLSN--RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG 329
L ++ L LSN + L N+ F L LN+ N + + +
Sbjct: 351 ---GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES----DAFSW 403
Query: 330 FPCLQSLGV---DIPGPLGESAIEILESLPTL 358
L+ L + +I L LE++ +
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Score = 50.4 bits (121), Expect = 2e-06
Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 25/160 (15%)
Query: 173 SLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP---VLKKCDHCMED 229
S + +L L L N + I + L+ L L L +N + K +
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIAN--INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 230 AILQGCPKLEIYN--SNFTINFGEWALGFCGEVYDKDNPSSLCLRD-----------RPL 276
L+G L I N SN E+ + L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL------KIIDLGLNNLNTLPASVFNNQ 583
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
S+ SL+L I ++ K F PA +L+ L++R NP +
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPA-FRNLTELDMRFNPFD 622
Score = 50.0 bits (120), Expect = 3e-06
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 41/181 (22%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L++L+LS + +LQ L L NK++ ++ ++ +L+ L L++N
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+K+ +L + N + LCL
Sbjct: 183 -IKE----FSPGCFHAIGRLFGLFLNNVQLGPSL----------------TEKLCLELA- 220
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
S+ +L LSN + N F + +L+ L++ N L + P L+
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEY 276
Query: 336 L 336
Sbjct: 277 F 277
Score = 50.0 bits (120), Expect = 3e-06
Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 52/212 (24%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKN--LRALWLNN 216
L LN+ + +L+ LSL + + + L + L L L
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
Query: 217 NPVLKKCDHCMEDAILQGCPKLEI----YNS-NFTINFGEWALGFCGEVYDKDNPSSLCL 271
N + K +E LE+ N + EW
Sbjct: 391 NKISK-----IESDAFSWLGHLEVLDLGLNEIGQELTGQEW------------------- 426
Query: 272 RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331
R L+++ + LS L +F+ +PSL L +R L +V +
Sbjct: 427 --RGLENIFEIYLSYNKYLQLTRNSFA--LVPSLQRLMLRRVAL--KNVDSSPSPFQPLR 480
Query: 332 CLQSLGVDIPG-PLGESAIEILESLPTLCTLN 362
L L D+ + ++LE L L L+
Sbjct: 481 NLTIL--DLSNNNIANINDDMLEGLEKLEILD 510
Score = 46.9 bits (112), Expect = 2e-05
Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 44/161 (27%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+ LNL+ +++ L +L + N + + + KL L+ L L +N
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLNLQHNE 84
Query: 219 VLKKCDHCMEDAILQGCPKLEI---YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ + D C L +++ K +
Sbjct: 85 L-----SQLSDKTFAFCTNLTELHLMSNSIQ----------------KIKNNPF----VK 119
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
+++ +LDLS+ + + + +L L + N ++
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQ--LENLQELLLSNNKIQ 158
Score = 46.1 bits (110), Expect = 4e-05
Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 65/183 (35%)
Query: 171 LLSLNLS-------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L+L ++ + L NK + + +L+ L L
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ--LTRNSFALVPSLQRLMLRRV 464
Query: 218 PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
L+ +PS PL+
Sbjct: 465 A-------------LKNVDS---------------------------SPSPFQ----PLR 480
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL----EQNSVRELLEVLKGFPCL 333
++T LDLSN I N+ + + L L+++ N L + + + LKG L
Sbjct: 481 NLTILDLSNNNIANINDDMLEG--LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 334 QSL 336
L
Sbjct: 539 HIL 541
Score = 45.4 bits (108), Expect = 7e-05
Identities = 33/181 (18%), Positives = 53/181 (29%), Gaps = 43/181 (23%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L LNL + +L L L N ++ I K KNL L L++N
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNG 132
Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ + L+ + N+ L SSL
Sbjct: 133 L-----SSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIF-------ANSSL------ 173
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L+LS+ I F + L L + L + +L L +++
Sbjct: 174 ----KKLELSSNQIKEFSPGCF--HAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRN 226
Query: 336 L 336
L
Sbjct: 227 L 227
Score = 45.0 bits (107), Expect = 9e-05
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 43/158 (27%)
Query: 171 LLSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
+ S ++ L+L N+L + T+ L +L + N + K
Sbjct: 6 HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISK 63
Query: 222 KCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
+E + Q P L++ +N + + +
Sbjct: 64 -----LEPELCQKLPMLKVLNLQHNELSQL-----------------SDKTF----AFCT 97
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
++T L L + I + N F +L L++ N L
Sbjct: 98 NLTELHLMSNSIQKIKNNPFVK--QKNLITLDLSHNGL 133
Score = 38.8 bits (91), Expect = 0.008
Identities = 28/204 (13%), Positives = 62/204 (30%), Gaps = 39/204 (19%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETV-------------------- 196
L L + +G + L L ++ LSL ++L T
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 197 ----EIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEW 252
+ L L +L N + + L G + N +
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQH-----LFSHSLHGLFNVRYLNLKRSFTKQSI 312
Query: 253 ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG 312
+L ++ + S + L+ + L++ + I + + F+ + +L +L++
Sbjct: 313 SLASLPKI----DDFSF----QWLKCLEHLNMEDNDIPGIKSNMFTG--LINLKYLSLSN 362
Query: 313 NPLEQNSVRELLEVLKGFPCLQSL 336
+ ++ V L L
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHIL 386
Score = 31.9 bits (73), Expect = 0.94
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L ++L + L++L+L N + +VE V +NL L + NP
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-PAFRNLTELDMRFNP 620
Score = 31.5 bits (72), Expect = 1.4
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
++T L+L++ + L F+ L+ L++ N + +
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISK 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 54.6 bits (132), Expect = 9e-08
Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 56/268 (20%)
Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRAL 212
++ L+++ ++ D L Q + L L + I + L L
Sbjct: 4 DIQSLDIQCEELSDARWAEL--LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 213 WLNNNPV-----------LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261
L +N + L+ C +Q KL + N T G +
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTP-SCK----IQ---KLSLQNCCLT---GAGCGVLSSTL- 109
Query: 262 DKDNPS--SLCLRD----------------RPLQSVTSLDLSNRCIHNLVNKAFSPA--E 301
+ P+ L L D P + L L + + +
Sbjct: 110 -RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168
Query: 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPC-LQSLGVD---IPGPLGESAI-EILESLP 356
P L + N + + VR L + LK PC L++L ++ + + I+ S
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKA 227
Query: 357 TLCTLNGVTASKILEEG-KHVIDSMLQP 383
+L L + ++K+ + G + +L P
Sbjct: 228 SLRELA-LGSNKLGDVGMAELCPGLLHP 254
Score = 52.7 bits (127), Expect = 3e-07
Identities = 35/247 (14%), Positives = 79/247 (31%), Gaps = 52/247 (21%)
Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLR 210
+++ L L +GD L L L+ L + + + + + + ++L+
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287
Query: 211 ALWLNNNP-----------VLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGE 259
L L N L + +E ++ C +F
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC------------SFTAACCSHFSS 335
Query: 260 VYDKDNPS--SLCLRD----------------RPLQSVTSLDLSNRCIHNLVNKAFSPA- 300
V N L + + +P + L L++ + + + +
Sbjct: 336 VL-AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394
Query: 301 -EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC-LQSLGVDIP--GPLGESAI-EILESL 355
SL L++ N L + +L+E ++ C L+ L + E + + +
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 454
Query: 356 PTLCTLN 362
P+L ++
Sbjct: 455 PSLRVIS 461
Score = 38.8 bits (91), Expect = 0.006
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 35/140 (25%)
Query: 277 QSVTSLDLSNRCIH-----------------NLVNKAFSPAE----------MPSLSHLN 309
+ SLD+ + L + + A P+L+ LN
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 310 IRGNPLEQNSVRELLEVLKGFPC-LQSL---GVDIPGPLGESAI-EILESLPTLCTLNGV 364
+R N L V +L+ L+ C +Q L + G + L +LPTL L+ +
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQELH-L 120
Query: 365 TASKILEEG-KHVIDSMLQP 383
+ + + + G + + + +L P
Sbjct: 121 SDNLLGDAGLQLLCEGLLDP 140
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 53.5 bits (129), Expect = 1e-07
Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 50/184 (27%)
Query: 171 LLSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVL 220
L + ++ P L L L GNK+ V+ L NL L L+ N +
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD---AASLKGLNNLAKLGLSFNSI- 228
Query: 221 KKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
+++ L P L N + P L
Sbjct: 229 ----SAVDNGSLANTPHLRELHLNNNKLVKV------------------PGGL----ADH 262
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAE----MPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
+ + + L N I + + F P S S +++ NP++ ++ +
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYV 320
Query: 333 LQSL 336
++
Sbjct: 321 RAAV 324
Score = 48.8 bits (117), Expect = 4e-06
Identities = 39/193 (20%), Positives = 64/193 (33%), Gaps = 53/193 (27%)
Query: 171 LLSLNLSS---------KFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVL 220
L L LS LQ L + N++ V + V L + + L NP+
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR---KSVFNGLNQMIVVELGTNPLK 158
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSS---LCLRD- 273
+E+ QG KL I ++N T + + P S L L
Sbjct: 159 ---SSGIENGAFQGMKKLSYIRIADTNIT------------TI-PQGLPPSLTELHLDGN 202
Query: 274 ----------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVREL 323
+ L ++ L LS I + N + + P L L++ N L ++
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNNKL-----VKV 255
Query: 324 LEVLKGFPCLQSL 336
L +Q +
Sbjct: 256 PGGLADHKYIQVV 268
Score = 37.7 bits (88), Expect = 0.014
Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 37/160 (23%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
PD L L NK+ ++ + LKNL L L NN + K + KLE
Sbjct: 51 PPDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISK-----ISPGAFAPLVKLE 103
Query: 240 ---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKA 296
+ + L ++ +++ L + I +
Sbjct: 104 RLYLSKNQLKE-----------------------LPEKMPKTLQELRVHENEITKVRKSV 140
Query: 297 FSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
F+ + + + + NPL+ + + +G L +
Sbjct: 141 FN--GLNQMIVVELGTNPLKSSGIEN--GAFQGMKKLSYI 176
Score = 36.1 bits (84), Expect = 0.041
Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 69/214 (32%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
+L L L NK+ + L L L+L+ N LK+ + + + + +
Sbjct: 73 KNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQ-LKE----LPEKMPKTLQE 125
Query: 238 LEIYNSNFTI----NFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN-- 291
L ++ + T F L + ++L + +
Sbjct: 126 LRVHENEITKVRKSVF------------------------NGLNQMIVVELGTNPLKSSG 161
Query: 292 LVNKAFSPAEMPSLSHLNIRGNP----------------LEQNSVREL-LEVLKGFPCLQ 334
+ N AF M LS++ I L+ N + ++ LKG L
Sbjct: 162 IENGAFQG--MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 335 SLGVD------IPGPLGESAIEILESLPTLCTLN 362
LG+ + L + P L L+
Sbjct: 220 KLGLSFNSISAVDN-------GSLANTPHLRELH 246
Score = 35.4 bits (82), Expect = 0.077
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 157 KWLELED---ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALW 213
+ + L + + IG + ++K +SL N ++ EI + A+
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325
Query: 214 LNNN 217
L N
Sbjct: 326 LGNY 329
Score = 28.8 bits (65), Expect = 8.5
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 265 NPSSLCLRDRPLQSV--------TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
+ + D L+ V LDL N I + + F + +L L + N +
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKI 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 53.6 bits (129), Expect = 2e-07
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 20/183 (10%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
++L+L + + ++ L + +P LQ L L N L +++ + + LKNL +L ++
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396
Query: 217 NPVLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
N D C Q K+ + ++ + EV D N ++L
Sbjct: 397 NTFHPMPDSC------QWPEKMRFLNLSSTGIRVVKTCIPQTL--EVLDVSN-NNLDSFS 447
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
L + L +S + L + + P L + I N L SV + + L
Sbjct: 448 LFLPRLQELYISRNKLKTLPDASL----FPVLLVMKISRNQL--KSVPD--GIFDRLTSL 499
Query: 334 QSL 336
Q +
Sbjct: 500 QKI 502
Score = 42.4 bits (100), Expect = 6e-04
Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 50/206 (24%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+ SL+LS +LQ L L +++ T+E L +L L L++N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDLSDNH 85
Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
L + + L+ + + + LG +
Sbjct: 86 -LSS----LSSSWFGPLSSLKYLNLMGNPYQ------TLGVTSLFPN------------- 121
Query: 276 LQSVTSLDLSNRCIHNLVNK-AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
L ++ +L + N + + + F+ + SL+ L I+ L + LK +
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAG--LTSLNELEIKALSLRNYQS----QSLKSIRDIH 175
Query: 335 SLGVDIPGP--LGESAIEILESLPTL 358
L + + L E +IL S+ L
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYL 201
Score = 41.2 bits (97), Expect = 0.002
Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 21/183 (11%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
L + ++ L L L + V ++ + VL +
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246
Query: 232 LQGCPKL-EIYNSNFTIN-FGEWALGFCGEVYDKDNPSSLCLRD---------------- 273
L+ +L E+ + T+N G++ V + ++ +R
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
L+ V + + N + + + SL L++ N + + ++ +P L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQ--HLKSLEFLDLSENLMVEEYLKNSA-CKGAWPSL 363
Query: 334 QSL 336
Q+L
Sbjct: 364 QTL 366
Score = 37.0 bits (86), Expect = 0.024
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L +L +S FP L + + N+L++V +L +L+ +WL+ NP
Sbjct: 463 LKTLPDASLFPVLLVMKISRNQLKSVP--DGIFDRLTSLQKIWLHTNP 508
Score = 36.2 bits (84), Expect = 0.048
Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 49/179 (27%)
Query: 173 SLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223
+ S+ +++L L NK+ I ++ NL+ L L ++ +
Sbjct: 9 VCDGRSRSFTSIPSGLTAAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRI---- 62
Query: 224 DHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
+ +E LE N ++ SS PL S+
Sbjct: 63 -NTIEGDAFYSLGSLEHLDLSDNHLSSL------------------SSSWF---GPLSSL 100
Query: 280 TSLDLSNRCIHNL-VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE-VLKGFPCLQSL 336
L+L L V F + +L L I + E+ G L L
Sbjct: 101 KYLNLMGNPYQTLGVTSLFP--NLTNLQTLRIGNV----ETFSEIRRIDFAGLTSLNEL 153
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 53.6 bits (129), Expect = 2e-07
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 27/166 (16%)
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
+ P L+ L L N L Q +L+ L L+ N +
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN----GVITM--SS 390
Query: 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH 290
G +LE ++F L E + +L LD+S+
Sbjct: 391 NFLGLEQLE------HLDFQHSNLKQMSEFSVFLSLRNL----------IYLDISHTHTR 434
Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
N F+ + SL L + GN ++N + ++ L L
Sbjct: 435 VAFNGIFN--GLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFL 475
Score = 49.7 bits (119), Expect = 3e-06
Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 47/181 (25%)
Query: 171 LLSLNLSS-----------KFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNP 218
L L+LS L+ L + L+ + V L+NL L +++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTH 432
Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ I G LE + ++F NF
Sbjct: 433 T-----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-------------------TE 468
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L+++T LDLS + L AF+ + SL LN+ N L SV + + LQ
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMASNQL--KSVPD--GIFDRLTSLQK 522
Query: 336 L 336
+
Sbjct: 523 I 523
Score = 47.0 bits (112), Expect = 2e-05
Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 25/213 (11%)
Query: 128 LHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALS 187
L N NV + ++ L + ++ L S L L+
Sbjct: 207 LRNNFDSLNVMKTCIQGLAG--------LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 188 LCGNKLETVEIIVQEVT----KLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNS 243
+ +L ++ + ++ L N+ + L + +++ + Q LE+ N
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQ---HLELVNC 314
Query: 244 NFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP 303
F F L + N + L S+ LDLS + + S
Sbjct: 315 KFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 304 SLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
SL +L++ N ++ + F L+ L
Sbjct: 374 SLKYLDLSFN--------GVITMSSNFLGLEQL 398
Score = 44.3 bits (105), Expect = 1e-04
Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 31/142 (21%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
FP+LQ L L +++T I L +L L L NP+ + G
Sbjct: 49 FSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQS-----LALGAFSGLSS 101
Query: 238 LEIYN--SNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL-VN 294
L+ + + +G L+++ L++++ I + +
Sbjct: 102 LQKLVAVETNLASLENFPIG-------------------HLKTLKELNVAHNLIQSFKLP 142
Query: 295 KAFSPAEMPSLSHLNIRGNPLE 316
+ FS + +L HL++ N ++
Sbjct: 143 EYFSN--LTNLEHLDLSSNKIQ 162
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/178 (14%), Positives = 45/178 (25%), Gaps = 46/178 (25%)
Query: 172 LSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
++ + L L N L + L+ L L+ +
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQT- 66
Query: 223 CDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQS 278
+ED Q L N ++ + L S
Sbjct: 67 ----IEDGAYQSLSHLSTLILTGNPIQSL-----------------ALGAF----SGLSS 101
Query: 279 VTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ L + +L N + +L LN+ N + +L E L+ L
Sbjct: 102 LQKLVAVETNLASLENFPIGH--LKTLKELNVAHNLI---QSFKLPEYFSNLTNLEHL 154
Score = 39.3 bits (92), Expect = 0.006
Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 45/221 (20%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L L+LS L L L GN +++ + + + L +L+ L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETN 111
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCG-----EVYDKDNP-SS 268
L +E+ + L+ +N + E F + N S
Sbjct: 112 -LAS----LENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQS 163
Query: 269 LCLRD-RPLQSVT----SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVREL 323
+ D R L + SLDLS ++ + AF L L +R N N ++
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE---IRLHKLTLRNNFDSLNVMKTC 220
Query: 324 LEVLKGFPCLQSLGVDIPGPLGESAIEILES--LPTLCTLN 362
++ L G L+ + + E +E + L LC L
Sbjct: 221 IQGLAG---LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Score = 38.2 bits (89), Expect = 0.012
Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 38/218 (17%)
Query: 171 LLSLNLSS------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L L L+ L++ N +++ ++ + + L NL L L++N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNK 160
Query: 219 VLKKCDHCMEDAILQGCPKLEIYN------SNFTINFGEWALGFCG----EVYDKDNPSS 268
+ + L+ ++ + N N A F ++ ++N S
Sbjct: 161 I-----QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDS 213
Query: 269 LCLRDRPLQSVTSL---DLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELL 324
L + +Q + L L N N + F + + L +L I L L
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY-LD 272
Query: 325 EVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362
+++ F CL ++ L IE ++
Sbjct: 273 DIIDLFNCLTNV---SSFSLVSVTIERVKDFSYNFGWQ 307
Score = 35.8 bits (83), Expect = 0.064
Identities = 21/158 (13%), Positives = 47/158 (29%), Gaps = 63/158 (39%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNN 217
L+ L++S + L+ L + GN + E + ++ T+L+NL L L+
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQC 480
Query: 218 PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
+ + L
Sbjct: 481 QL-----EQLSPTAFNSLSSL--------------------------------------- 496
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
L++++ + ++ + F + SL + + NP
Sbjct: 497 --QVLNMASNQLKSVPDGIFDR--LTSLQKIWLHTNPW 530
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 51.1 bits (123), Expect = 2e-07
Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 60/234 (25%)
Query: 110 VDTDLDTDIEEV--DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIG 167
D + K L+ +S+ +I E+++++ + ++ L + ++
Sbjct: 6 TGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNS--------LTYITLANINVT 57
Query: 168 DDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCM 227
D L+ + +++ L++ I + L NL L + V +
Sbjct: 58 D---LT-GIE-YAHNIKDLTINNIHATNYNPI----SGLSNLERLRIMGKDVT---SDKI 105
Query: 228 EDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL 284
+ L G L I +S + + + L V S+DL
Sbjct: 106 PN--LSGLTSLTLLDISHSAHDDS----------------ILTKI----NTLPKVNSIDL 143
Query: 285 S-NRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
S N I ++ P +P L LNI+ + + ++ FP L L
Sbjct: 144 SYNGAITDI-----MPLKTLPELKSLNIQFDGVHD------YRGIEDFPKLNQL 186
Score = 39.2 bits (92), Expect = 0.002
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
+ S++LS P+L++L++ + + I L L+ + +
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI----EDFPKLNQLYAFSQTI 193
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 53.2 bits (128), Expect = 2e-07
Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 39/198 (19%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE- 239
L+ L+L L ++ + ++ L L L L + + + + D + +L+
Sbjct: 152 NSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLRHLNI-----NAIRDYSFKRLYRLKV 204
Query: 240 --IYNSNFTINFGEWALGFCG--EVYDKDN-----PSSLCLRDRPLQSVTSLDLSNRCIH 290
I + + L + P R L + L+LS I
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV---RHLVYLRFLNLSYNPIS 261
Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD------IPGPL 344
+ + L + + G L V +G L+ L V +
Sbjct: 262 TIEGSMLHE--LLRLQEIQLVGGQLA--VVEP--YAFRGLNYLRVLNVSGNQLTTLEE-- 313
Query: 345 GESAIEILESLPTLCTLN 362
+ S+ L TL
Sbjct: 314 -----SVFHSVGNLETLI 326
Score = 47.4 bits (113), Expect = 1e-05
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 34/137 (24%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE--- 239
L +LS+ L V + V L LR L L+ NP+ +E ++L +L+
Sbjct: 226 LTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYNPI-----STIEGSMLHELLRLQEIQ 278
Query: 240 IYNSNFT-INFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS 298
+ + F G L + L++S + L F
Sbjct: 279 LVGGQLAVVEPYA----FRG-----------------LNYLRVLNVSGNQLTTLEESVFH 317
Query: 299 PAEMPSLSHLNIRGNPL 315
+ +L L + NPL
Sbjct: 318 S--VGNLETLILDSNPL 332
Score = 46.6 bits (111), Expect = 2e-05
Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 50/182 (27%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L +L L + +L L + NK+ + L NL++L + +N
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDND 139
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
+ + G LE + +I
Sbjct: 140 L-----VYISHRAFSGLNSLEQLTLEKCNLTSIPTE----ALSH---------------- 174
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
L + L L + I+ + + +F + L L I P L L L
Sbjct: 175 -LHGLIVLRLRHLNINAIRDYSFKR--LYRLKVLEISHWPYLDTMTPNCLYGLN----LT 227
Query: 335 SL 336
SL
Sbjct: 228 SL 229
Score = 43.9 bits (104), Expect = 2e-04
Identities = 34/163 (20%), Positives = 53/163 (32%), Gaps = 38/163 (23%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
+ FP L+ L L N + VE L NLR L L +N LK + + G
Sbjct: 53 ASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNR-LKL----IPLGVFTGLSN 105
Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
L N + + L ++ SL++ + + +
Sbjct: 106 LTKLDISENKIVIL-----------------LDYMF----QDLYNLKSLEVGDNDLVYIS 144
Query: 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
++AFS + SL L + L E L L L
Sbjct: 145 HRAFSG--LNSLEQLTLEKCNLTSIPT----EALSHLHGLIVL 181
Score = 32.0 bits (73), Expect = 0.85
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
L+ L++ GN+L T+E V + NL L L++NP+ CD
Sbjct: 296 NYLRVLNVSGNQLTTLEESV--FHSVGNLETLILDSNPLA--CD 335
Score = 30.8 bits (70), Expect = 2.3
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
LDL I L F+ P L L + N +
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSA 70
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 50.5 bits (121), Expect = 3e-07
Identities = 36/189 (19%), Positives = 61/189 (32%), Gaps = 59/189 (31%)
Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWL 214
V+ L L++ + L+++F +L+ LSL L +V + KL L+ L L
Sbjct: 25 AVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL----PKLPKLKKLEL 78
Query: 215 NNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
+ N + D + + P L
Sbjct: 79 SENRIFG-----GLDMLAEKLPNLTH---------------------------------- 99
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPL-EQNSVRELLEVLKGFPC 332
L+LS + ++ P ++ L L++ + N RE V K P
Sbjct: 100 -------LNLSGNKLKDI--STLEPLKKLECLKSLDLFNCEVTNLNDYRE--SVFKLLPQ 148
Query: 333 LQSL-GVDI 340
L L G D
Sbjct: 149 LTYLDGYDR 157
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 49.7 bits (119), Expect = 3e-07
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 57/169 (33%)
Query: 174 LNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233
L+ +F +L+ LS L ++ + KL L+ L L++N V + + +
Sbjct: 35 EGLTDEFEELEFLSTINVGLTSIANL----PKLNKLKKLELSDNRVSG-----GLEVLAE 85
Query: 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
CP L L+LS I +L
Sbjct: 86 KCPNLTH-----------------------------------------LNLSGNKIKDL- 103
Query: 294 NKAFSP-AEMPSLSHLNIRGNPL-EQNSVRELLEVLKGFPCLQSL-GVD 339
P ++ +L L++ + N RE V K P L L G D
Sbjct: 104 -STIEPLKKLENLKSLDLFNCEVTNLNDYRE--NVFKLLPQLTYLDGYD 149
Score = 47.0 bits (112), Expect = 3e-06
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
K LEL D + L+ K P+L L+L GNK++ + I + + KL+NL++L L N
Sbjct: 67 KKLELSDNRVSG---GLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFN 122
Query: 217 NPVLKKCDHCMEDAILQGCPKLEI 240
V D+ + + + P+L
Sbjct: 123 CEVTNLNDY--RENVFKLLPQLTY 144
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 51.9 bits (125), Expect = 4e-07
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 45/193 (23%)
Query: 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRA 211
G L+L I + L + L L L NK++ +E E + L
Sbjct: 166 PGAFDGLKLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIE---LEDLLRYSKLYR 221
Query: 212 LWLNNNPVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPS 267
L L +N + +E+ L P L N + P+
Sbjct: 222 LGLGHNQI-----RMIENGSLSFLPTLRELHLDNNKLSRV------------------PA 258
Query: 268 SLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP----AEMPSLSHLNIRGNPLEQNSVREL 323
L L+ + + L I + F P + + +++ NP+ V+
Sbjct: 259 GL----PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314
Query: 324 LEVLKGFPCLQSL 336
F C+
Sbjct: 315 T-----FRCVTDR 322
Score = 48.9 bits (117), Expect = 4e-06
Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 50/191 (26%)
Query: 171 LLSLNLSS---------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
L L +S L L + N++ V + L+N+ + + NP+
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPL-- 159
Query: 222 KCDHCMEDAILQGCP--KLEIYNSNFTINFGEWALGFCGEVYDKDNPSS---LCLRD--- 273
+ E G L I + T KD P + L L
Sbjct: 160 -ENSGFEPGAFDGLKLNYLRISEAKLT-------------GIPKDLPETLNELHLDHNKI 205
Query: 274 --------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE 325
+ L L + I + N + S +P+L L++ N L +
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLS-----RVPA 258
Query: 326 VLKGFPCLQSL 336
L LQ +
Sbjct: 259 GLPDLKLLQVV 269
Score = 39.2 bits (92), Expect = 0.004
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 166 IGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+G + + K +SL N + E+ + + A+ N
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 36.5 bits (85), Expect = 0.030
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 35/146 (23%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
PD L L N + + + L++L AL L NN + K + + KL+
Sbjct: 53 SPDTTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKISK-----IHEKAFSPLRKLQ 105
Query: 240 ---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKA 296
I ++ + S+ L + + I +
Sbjct: 106 KLYISKNHLV-----------------------EIPPNLPSSLVELRIHDNRIRKVPKGV 142
Query: 297 FSPAEMPSLSHLNIRGNPLEQNSVRE 322
FS + +++ + + GNPLE +
Sbjct: 143 FS--GLRNMNCIEMGGNPLENSGFEP 166
Score = 33.1 bits (76), Expect = 0.37
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
LQ + +L L N I + KAFSP + L L I N L + L L
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSP--LRKLQKLYISKNHLV--EIPPNL-----PSSLVE 127
Query: 336 L 336
L
Sbjct: 128 L 128
Score = 28.8 bits (65), Expect = 7.6
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 265 NPSSLCLRDRPLQSV--------TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
+ + D L++V T LDL N I L F + L L + N +
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKI 90
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 52.7 bits (127), Expect = 4e-07
Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 14/184 (7%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT----KLKNLRAL 212
+ L + ++ L S L L++ +L ++ + ++ L N+ +
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
L + + + + G LE+ N F F L + N
Sbjct: 288 SLVSVTIE----RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFS 342
Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
+ L S+ LDLS + + S SL +L++ N + + G
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQ 397
Query: 333 LQSL 336
L+ L
Sbjct: 398 LEHL 401
Score = 51.2 bits (123), Expect = 1e-06
Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 38/174 (21%)
Query: 171 LLSLNLSSKF-----PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH 225
S + F P L+ L L N L Q +L+ L L+ N V+
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---- 387
Query: 226 CMEDAILQGCPKLEI---YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
M L G +LE +SN L+++ L
Sbjct: 388 -MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFL-------------------SLRNLIYL 426
Query: 283 DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
D+S+ N F+ + SL L + GN ++N + ++ L+ L L
Sbjct: 427 DISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRN---LTFL 475
Score = 47.7 bits (114), Expect = 2e-05
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 35/169 (20%)
Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
L L+LS L+ L + L+ + L+NL L +++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHT 433
Query: 220 LKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVY---------DKDNPS 267
+ I G LE + ++F NF + ++ +P+
Sbjct: 434 -----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 268 SLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
+ L S+ L++S+ +L + + SL L+ N +
Sbjct: 489 AF----NSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIM 531
Score = 46.9 bits (112), Expect = 2e-05
Identities = 21/158 (13%), Positives = 35/158 (22%), Gaps = 26/158 (16%)
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
+ ++ +L L + L +L L + N +
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPD---- 464
Query: 231 ILQGCPKLEI----YNSNFTINFGEWALGFCGEVYD---KDN------PSSLCLRDRPLQ 277
I L A + N + L
Sbjct: 465 IFTELRNLTFLDLSQC-QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY----KCLN 518
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
S+ LD S I + SL+ LN+ N
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDF 555
Score = 44.6 bits (106), Expect = 1e-04
Identities = 27/174 (15%), Positives = 46/174 (26%), Gaps = 41/174 (23%)
Query: 171 LLSLNLSS----KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHC 226
+ LN + L L N L + L+ L L+ +
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQT----- 66
Query: 227 MEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
+ED Q L N ++ + L S+ L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSL-----------------ALGAF----SGLSSLQKL 105
Query: 283 DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ +L N + +L LN+ N + +L E L+ L
Sbjct: 106 VAVETNLASLENFPIGH--LKTLKELNVAHNLI---QSFKLPEYFSNLTNLEHL 154
Score = 44.2 bits (105), Expect = 2e-04
Identities = 31/184 (16%), Positives = 52/184 (28%), Gaps = 49/184 (26%)
Query: 170 MLLSLNLS--------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLN 215
L L+LS L+ L L N + T+ L+ L L
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQ 404
Query: 216 NNPVLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
++ E ++ L I +++ + F F G
Sbjct: 405 HS----NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---FNG-------------- 443
Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
L S+ L ++ E+ +L+ L++ LEQ S
Sbjct: 444 ---LSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSP----TAFNSLSS 495
Query: 333 LQSL 336
LQ L
Sbjct: 496 LQVL 499
Score = 43.5 bits (103), Expect = 3e-04
Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 45/162 (27%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+L+LS FP+LQ L L +++T I L +L L L NP
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNP 87
Query: 219 VLKKCDHCMEDAILQGCPKLEI---YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ + G L+ +N +
Sbjct: 88 IQS-----LALGAFSGLSSLQKLVAVETNLA----------------SLENFPI----GH 122
Query: 276 LQSVTSLDLSNRCIHNL-VNKAFSPAEMPSLSHLNIRGNPLE 316
L+++ L++++ I + + + FS + +L HL++ N ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQ 162
Score = 39.2 bits (92), Expect = 0.006
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 43/220 (19%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L L+LS L L L GN +++ + + + L +L+ L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETN 111
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCG---EVYDKDN------ 265
L +E+ + L+ +N + E + N
Sbjct: 112 -LAS----LENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIY 165
Query: 266 PSSLC-LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELL 324
+ L L PL ++ SLDLS ++ + AF L L +R N N ++
Sbjct: 166 CTDLRVLHQMPLLNL-SLDLSLNPMNFIQPGAFK---EIRLHKLTLRNNFDSLNVMKTC- 220
Query: 325 EVLKGFPCLQSLGVDIPGPLGESAIEILE--SLPTLCTLN 362
++G L+ + + E +E + +L LC L
Sbjct: 221 --IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 50.7 bits (120), Expect = 1e-06
Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 13/210 (6%)
Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQAL-SLCGNKLETVEIIVQEVTKLKNLRALW 213
+ L D D + + + P L A+ L K++ + NL++L
Sbjct: 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE 199
Query: 214 LNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
+ + D +ED + P LE + G GF G++
Sbjct: 200 IISGG---LPDSVVEDILGSDLPNLE----KLVLYVGVEDYGFDGDMNV----FRPLFSK 248
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAE-MPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
++ L + + N+V + F ++ +P L ++I L R LL+ +
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308
Query: 333 LQSLGVDIPGPLGESAIEILESLPTLCTLN 362
L+ + + E E+ +SLP ++
Sbjct: 309 LKFINMKYNYLSDEMKKELQKSLPMKIDVS 338
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 51.2 bits (123), Expect = 1e-06
Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 45/180 (25%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L SL L+ P L L L N L +LR L L+ N
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--- 386
Query: 221 KKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
+ A G +L+ +++ + S+ L
Sbjct: 387 ---GAIIMSANFMGLEELQHLDFQHSTLKRVT----------------EFSAFL----SL 423
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ + LD+S + F + SL+ L + GN + N++ + L L
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLG--LTSLNTLKMAGNSFKDNTLSNVFANTTN---LTFL 478
Score = 49.3 bits (118), Expect = 5e-06
Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 41/175 (23%)
Query: 166 IGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH 225
G L +S L+ L L N I+ L+ L+ L ++ LK+
Sbjct: 365 SGCCSYSDLGTNS----LRHLDLSFNGA---IIMSANFMGLEELQHLDFQHST-LKRVT- 415
Query: 226 CMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
E + KL I +N I+F L S+ +L
Sbjct: 416 --EFSAFLSLEKLLYLDISYTNTKIDF----------------DGIFL----GLTSLNTL 453
Query: 283 DLS-NRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
++ N N ++ F+ +L+ L++ LEQ S V LQ L
Sbjct: 454 KMAGNSFKDNTLSNVFAN--TTNLTFLDLSKCQLEQISW----GVFDTLHRLQLL 502
Score = 48.9 bits (117), Expect = 6e-06
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 41/172 (23%)
Query: 171 LLSLNLSS-----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
L L+LS +LQ L + L+ V L+ L L ++
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYTNT 436
Query: 220 LKKCDHCMEDAILQGCPKLEIYN--SNFTINFGEWALGFCGEVYDKDNPS--SLCLRD-- 273
D I G L N + + + + L L
Sbjct: 437 -----KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-------ANTTNLTFLDLSKCQ 484
Query: 274 ---------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
L + L++S+ + L + ++ + SLS L+ N +E
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ--LYSLSTLDCSFNRIE 534
Score = 48.9 bits (117), Expect = 6e-06
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 13/166 (7%)
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
+ ++ D+ + + L N+ A+ L +K + +
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHF 307
Query: 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH 290
Q L I F L F + N S+ + L S++ LDLS +
Sbjct: 308 KWQ---SLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363
Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
++S SL HL++ N S F L+ L
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMS--------ANFMGLEEL 401
Score = 48.1 bits (115), Expect = 9e-06
Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 45/161 (27%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
LL L++S L L + GN + + NL L L+
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN-TLSNVFANTTNLTFLDLSKCQ 484
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
+ + + +L++ +N+ ++ +
Sbjct: 485 L-----EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY---------------------N 518
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
L S+++LD S I SL+ N+ N +
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHF--PKSLAFFNLTNNSV 557
Score = 45.0 bits (107), Expect = 9e-05
Identities = 23/178 (12%), Positives = 48/178 (26%), Gaps = 46/178 (25%)
Query: 172 LSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
++ + + + L N L+ + + L+ L L+ +
Sbjct: 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIET- 70
Query: 223 CDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQS 278
+ED G L N + +P S L S
Sbjct: 71 ----IEDKAWHGLHHLSNLILTGNPIQSF-----------------SPGSF----SGLTS 105
Query: 279 VTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ +L + +L + + +L LN+ N + +L L +
Sbjct: 106 LENLVAVETKLASLESFPIGQ--LITLKKLNVAHNFI---HSCKLPAYFSNLTNLVHV 158
Score = 44.3 bits (105), Expect = 1e-04
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 35/144 (24%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
S F +LQ L L ++ET I + L +L L L NP+ G
Sbjct: 53 SNFSELQWLDLSRCEIET--IEDKAWHGLHHLSNLILTGNPI-----QSFSPGSFSGLTS 105
Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL- 292
LE ++ + L ++ L++++ IH+
Sbjct: 106 LENLVAVETKLASL-----------------ESFPIG----QLITLKKLNVAHNFIHSCK 144
Query: 293 VNKAFSPAEMPSLSHLNIRGNPLE 316
+ FS + +L H+++ N ++
Sbjct: 145 LPAYFS--NLTNLVHVDLSYNYIQ 166
Score = 41.9 bits (99), Expect = 9e-04
Identities = 41/210 (19%), Positives = 65/210 (30%), Gaps = 44/210 (20%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L +L L+ S L+ L KL + + +L L+ L + +N
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA--SLESFPIGQLITLKKLNVAHNF 139
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
+ C A L YN TI + L
Sbjct: 140 I----HSCKLPAYFSNLTNLVHVDLSYNYIQTI-----------------TVNDLQFLRE 178
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
Q SLD+S I + ++AF L L +RGN N ++ L+ L G +
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQG---IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235
Query: 335 SLGVDIPG--PLGESAIEILESLPTLCTLN 362
+ + L I+E L +
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 48.9 bits (117), Expect = 1e-06
Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 57/202 (28%)
Query: 157 KWLELEDADIGDDMLLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTK 205
+ E + + + L+ S + L+L N +E + ++
Sbjct: 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS----SLSG 68
Query: 206 LKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVY 261
++NLR L L N ++KK ++ + LE YN ++
Sbjct: 69 MENLRILSLGRN-LIKKIEN-----LDAVADTLEELWISYNQIASL-------------- 108
Query: 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSV 320
S + L ++ L +SN I N A + L L + GNPL +
Sbjct: 109 -----SGI----EKLVNLRVLYMSNNKITNW--GEIDKLAALDKLEDLLLAGNPLYNDYK 157
Query: 321 REL------LEVLKGFPCLQSL 336
+EV+K P L+ L
Sbjct: 158 ENNATSEYRIEVVKRLPNLKKL 179
Score = 43.9 bits (104), Expect = 7e-05
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 169 DMLLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
D L L +S K +L+ L + NK+ I ++ L L L L NP
Sbjct: 93 DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNP 151
Query: 219 VLKKCDHCMEDA-----ILQGCPKLEIYN 242
+ + +++ P L+ +
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 51.3 bits (123), Expect = 1e-06
Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 25/157 (15%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
L + L N+LE ++I + + ++ +L+ L LN N C D
Sbjct: 395 TLPKINLTANLIHLSENRLENLDI-LYFLLRVPHLQILILNQNRF----SSCSGDQTPSE 449
Query: 235 CPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN 291
P LE + + + W C +V+ L + L L++ +++
Sbjct: 450 NPSLEQLFLGENMLQL---AWETELCWDVF------------EGLSHLQVLYLNHNYLNS 494
Query: 292 LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
L FS + +L L++ N L S +L L+
Sbjct: 495 LPPGVFSH--LTALRGLSLNSNRLTVLSHNDLPANLE 529
Score = 50.2 bits (120), Expect = 3e-06
Identities = 33/182 (18%), Positives = 53/182 (29%), Gaps = 28/182 (15%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L LS LQ L L + I + L NLR L L ++
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSK 84
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYD---KDNP-SSLC 270
+ + QG L + + + N SL
Sbjct: 85 IYF-----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Query: 271 LRD--RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
L L S+ S+D S+ I + P + +LS ++ N L + + +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Query: 329 GF 330
F
Sbjct: 200 PF 201
Score = 46.0 bits (109), Expect = 6e-05
Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 40/171 (23%)
Query: 173 SLNLSS---KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED 229
NL+ + L L N + TV L+ L+ L L + ++
Sbjct: 13 FCNLTQVPQVLNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLT----IDK 66
Query: 230 AILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLS 285
+ P L I + + ++ F G L + L L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPD----AFQG-----------------LFHLFELRLY 105
Query: 286 NRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ + V K + +L+ L++ N + L + F L SL
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------LYLHPSFGKLNSL 150
Score = 43.3 bits (102), Expect = 3e-04
Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 30/149 (20%)
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
L L + P LQ L L N+ + Q ++ +L L+L N + + +
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSG-DQTPSENPSLEQLFLGENMLQLAWETELCWD 474
Query: 231 ILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN 286
+ +G L++ +N ++ G + L ++ L L++
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVF---------------------SHLTALRGLSLNS 513
Query: 287 RCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
+ L + +L L+I N L
Sbjct: 514 NRLTVLSHNDLP----ANLEILDISRNQL 538
Score = 41.7 bits (98), Expect = 0.001
Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 21/184 (11%)
Query: 161 LEDADIGDDMLLSLNLSSKF---PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L D+ + + SL L F L+++ N++ V E + K L L N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 218 PVLKKCD----HCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
+ + CM L++ + +T++ G K SL L
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD----ITGNFSNAISKSQAFSLIL-- 238
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELL-EVLKGFPC 332
+ I + F+ S+ HL+ L V L V +
Sbjct: 239 --AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD-----LSHGFVFSLNSRVFETLKD 291
Query: 333 LQSL 336
L+ L
Sbjct: 292 LKVL 295
Score = 40.2 bits (94), Expect = 0.003
Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 41/222 (18%)
Query: 166 IGDDMLLSLNLSSKFPDLQALSLCGNKLETVE----IIVQEVTKLKNLRALWLNNNPVLK 221
+ + L L + L SL N L + + L L ++ N
Sbjct: 163 VCEHELEPL----QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218
Query: 222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG-EVYDKDNPSSLCLRD------- 273
+ K + ++ + GF + D++ + L
Sbjct: 219 D----ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274
Query: 274 ------------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVR 321
L+ + L+L+ I+ + ++AF + +L LN+ N L +
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG--LDNLQVLNLSYNLLGELYS- 331
Query: 322 ELLEVLKGFPCLQSLGVDIPG-PLGESAIEILESLPTLCTLN 362
G P + + D+ + + + L L TL+
Sbjct: 332 ---SNFYGLPKVAYI--DLQKNHIAIIQDQTFKFLEKLQTLD 368
Score = 38.6 bits (90), Expect = 0.008
Identities = 29/180 (16%), Positives = 46/180 (25%), Gaps = 38/180 (21%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT------KLKNLRALWLNNNPVL---KK 222
+ LQ L L N L T+ I KL L + L N + +
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412
Query: 223 CDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
++ L P L+ + + F+ G+ E S+
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGD---QTPSE----------------NPSL 453
Query: 280 TSLDLSNRCIHNLVNKAFSP---AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
L L + + L L + N L V L+ L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP----GVFSHLTALRGL 509
Score = 30.5 bits (69), Expect = 3.2
Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 143 SEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQE 202
+ + ++ L + + L L+ + +L+ L + N+L
Sbjct: 493 NSLPPGVFSHLTALRGL-----SLNSNRLTVLSHNDLPANLEILDISRNQLLAP-----N 542
Query: 203 VTKLKNLRALWLNNNPVLKKCD 224
+L L + +N + +C+
Sbjct: 543 PDVFVSLSVLDITHNKFICECE 564
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 50.9 bits (121), Expect = 2e-06
Identities = 51/266 (19%), Positives = 93/266 (34%), Gaps = 70/266 (26%)
Query: 104 MASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELED 163
M + V T + I DA + +N K +V D + ++ + +
Sbjct: 1 MGETITVSTPI-KQIFPDDAFAETIKDNLKKKSVTDA--VTQNELN-----SIDQIIANN 52
Query: 164 ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223
+DI + + P++ L L GNKL ++ + T LKNL L+L+ N +
Sbjct: 53 SDIKS--VQGI---QYLPNVTKLFLNGNKLTDIKPL----TNLKNLGWLFLDENKIKDLS 103
Query: 224 DHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
L+ KL+ + ++ + + + L L +
Sbjct: 104 S-------LKDLKKLKSLSLEHNGIS------------------DINGLV----HLPQLE 134
Query: 281 SLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
SL L N I ++ + + + L L++ N + + L G LQ+L +
Sbjct: 135 SLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISD------IVPLAGLTKLQNLYLS 183
Query: 340 ---IPGPLGESAIEILESLPTLCTLN 362
I S + L L L L
Sbjct: 184 KNHI------SDLRALAGLKNLDVLE 203
Score = 37.8 bits (87), Expect = 0.017
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L +L+L + LQ L L N + + + LKNL L L + L
Sbjct: 155 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECL 210
Query: 221 KKCDHCMEDAILQGCPKLEIYNSNF 245
K + + L ++ + +
Sbjct: 211 NKPINHQSN--LVVPNTVKNTDGSL 233
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 50.1 bits (120), Expect = 2e-06
Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 54/237 (22%)
Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLR 210
+++ L L + +++ L S L ++L +L + ++ R
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV---FLRAR 129
Query: 211 ALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLC 270
L L N + C L + L + +
Sbjct: 130 KLGLQLNSL--------GPE---ACKDL-----------RD-LL--------LHDQCQI- 157
Query: 271 LRDRPLQSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVLK 328
T+L LSN + S++HL++ L + L L
Sbjct: 158 ---------TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208
Query: 329 GFPCLQSLGVDI--PGPLGESAI-EILESLPTLCTLNGVTASKILEEGKHVIDSMLQ 382
LQ L V G A+ P+L L+ + +++ EG+ V+ +
Sbjct: 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH-LYFNELSSEGRQVLRDLGG 264
Score = 45.5 bits (108), Expect = 5e-05
Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 28/227 (12%)
Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLK-NLRA 211
+ + L + L +L F + L L N L E + + + + +
Sbjct: 102 ALDEVNLASCQLDPAGLRTL--LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159
Query: 212 LWLNNNPVLKKCDHCMED--AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSL 269
L L+NNP+ + L G + ++ LG G L
Sbjct: 160 LRLSNNPL---TAAGVAVLMEGLAGNTSVT------HLSLLHTGLGDEG-------LELL 203
Query: 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVL 327
+ + + L+++ + A + A E PSL L++ N L + L ++
Sbjct: 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLG 263
Query: 328 KGFPCLQSLGVDIPG--PLGESAIEIL-ESLPTLCTLNGVTASKILE 371
+ V + + E IL E L + + + LE
Sbjct: 264 GAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE 310
Score = 35.8 bits (83), Expect = 0.049
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG 329
L + L LD + N+ FS + SL LN+ G + + VL
Sbjct: 40 KLGRQVLPPSELLDH-LFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGS 98
Query: 330 FPC-LQSLGVDIPGPLGESAIEILESLPTLCTLN 362
L + + +L L
Sbjct: 99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 50.7 bits (121), Expect = 2e-06
Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 34/213 (15%)
Query: 157 KWLELEDADIGDDMLLSL-NLSSKFPDLQALSL-CGNKLETVEIIVQEVTKLKNLRALWL 214
K L+L ++D+ D L + + L +L++ C + + + VT+ NL++L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218
Query: 215 NNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
N L+K +LQ P+LE E G D S L +
Sbjct: 219 NRAVPLEKLA-----TLLQRAPQLE-----------ELGTGGYTAEVRPDVYSGLSVALS 262
Query: 275 PLQSVTSL----DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGF 330
+ + L D + + + L+ LN+ + +L+++L
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVC------SRLTTLNLSYATV---QSYDLVKLLCQC 313
Query: 331 PCLQSLGVDIPGPLGESAIE-ILESLPTLCTLN 362
P LQ L + + ++ +E + + L L
Sbjct: 314 PKLQRL--WVLDYIEDAGLEVLASTCKDLRELR 344
Score = 39.5 bits (92), Expect = 0.005
Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 20/144 (13%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
+ L + A D + + S L+ L + + ++ +KL+ +R+LW+++
Sbjct: 459 EMLSVAFAGDSDLGMHHV--LSGCDSLRKLEIRDCPFGD-KALLANASKLETMRSLWMSS 515
Query: 217 NPVLKKCDHCMEDAILQGCPKL--EIYNSNFTINFGEWALGFCGEVY-------DKDNPS 267
V + Q PKL E+ + + + D P
Sbjct: 516 CSVSFGA----CKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDMPG 571
Query: 268 SLCLRDRPLQSVTSLDLSNRCIHN 291
+ + +++ S + I
Sbjct: 572 FVW----NMDQDSTMRFSRQIITT 591
Score = 36.4 bits (84), Expect = 0.043
Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 58/198 (29%)
Query: 172 LSLNLSSKFPD--LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC---DHC 226
+ L F D L G +E + T L+ +R LK+ D C
Sbjct: 71 VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIR---------LKRMVVTDDC 121
Query: 227 MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN 286
+E I + ++ L C L + ++
Sbjct: 122 LE-LIAKSFKNFKVLV-----------LSSCEGFSTDG-----------LAA-----IAA 153
Query: 287 RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV-DIPGPLG 345
C +L L++R + ++ S L + L SL + + +
Sbjct: 154 TC--------------RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199
Query: 346 ESAIE-ILESLPTLCTLN 362
SA+E ++ P L +L
Sbjct: 200 FSALERLVTRCPNLKSLK 217
Score = 35.3 bits (81), Expect = 0.092
Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 65/185 (35%)
Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT---------KLKNLRALWLN 215
+ + L+++ + P++ LC + + + + E K+LR L L+
Sbjct: 383 QMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440
Query: 216 NNPVLKKC--DHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
D E I K+E+ + + F G
Sbjct: 441 G------LLTDKVFE-YIGTYAKKMEMLS-----------VAFAG--------------- 467
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
S+ +H++++ SL L IR P + LL +
Sbjct: 468 ----------DSDLGMHHVLSG------CDSLRKLEIRDCPF---GDKALLANASKLETM 508
Query: 334 QSLGV 338
+SL +
Sbjct: 509 RSLWM 513
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 48.1 bits (115), Expect = 2e-06
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 56/164 (34%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
NL + A+ N++ ++ L+ L+ L +NNN + + + + + Q
Sbjct: 36 NLGATLDQFDAIDFSDNEIRKLDGF----PLLRRLKTLLVNNNRICR-----IGEGLDQA 86
Query: 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
P L L L+N + L
Sbjct: 87 LPDLTE-----------------------------------------LILTNNSLVEL-- 103
Query: 295 KAFSP-AEMPSLSHLNIRGNPLEQNSV-RELLEVLKGFPCLQSL 336
P A + SL++L I NP+ R L V+ P ++ L
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVTNKKHYR--LYVIYKVPQVRVL 145
Score = 46.6 bits (111), Expect = 6e-06
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
K L + + I + L PDL L L N L + + + LK+L L +
Sbjct: 67 KTLLVNNNRICR---IGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILR 122
Query: 217 NPVLKKCDHCMEDAILQGCPKLEI 240
NPV K + + ++ P++ +
Sbjct: 123 NPVTNKKHYRLY--VIYKVPQVRV 144
Score = 36.6 bits (85), Expect = 0.013
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 160 ELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
+ + D D+ + L+ L+ L + N++ + + + L +L L L NN +
Sbjct: 43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSL 100
Query: 220 LKKCDHCMEDAILQGCPKLEI 240
+ L L
Sbjct: 101 ----VELGDLDPLASLKSLTY 117
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 49.7 bits (119), Expect = 3e-06
Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 42/165 (25%)
Query: 157 KWLELED----ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRAL 212
+ L+L + + I + L +L+ L+L L + +T L L L
Sbjct: 163 RRLDLGELKRLSYISEGAFEGL------SNLRYLNLAMCNLREI----PNLTPLIKLDEL 212
Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLE-IY-NSNFTINFGEWALGFCGEVYDKDNPSSLC 270
L+ N + + QG L+ ++ + A
Sbjct: 213 DLSGNHL-----SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF---------------- 251
Query: 271 LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
LQS+ ++L++ + L + F+P + L +++ NP
Sbjct: 252 ---DNLQSLVEINLAHNNLTLLPHDLFTP--LHHLERIHLHHNPW 291
Score = 45.1 bits (107), Expect = 8e-05
Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 44/200 (22%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE- 239
+L L L N+L T+ L L+ LWL NNP+ + P L
Sbjct: 112 ANLNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPI-----ESIPSYAFNRIPSLRR 164
Query: 240 --IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD---------RPLQSVTSLDLSNRC 288
+ E A + L L PL + LDLS
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNL------RYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218
Query: 289 IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD------IPG 342
+ + +F + L L + + ++ + L + + +P
Sbjct: 219 LSAIRPGSFQG--LMHLQKLWMIQSQIQ--VIER--NAFDNLQSLVEINLAHNNLTLLPH 272
Query: 343 PLGESAIEILESLPTLCTLN 362
++ L L ++
Sbjct: 273 -------DLFTPLHHLERIH 285
Score = 37.4 bits (87), Expect = 0.017
Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 48/191 (25%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
+ + L+L N+++ ++ V L++L L L+ N + +E G L
Sbjct: 63 STNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHI-----RTIEIGAFNGLANLN 115
Query: 240 I----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295
N TI G F L + L L N I ++ +
Sbjct: 116 TLELFDNRLTTIPNG----AF-----------------VYLSKLKELWLRNNPIESIPSY 154
Query: 296 AFSPAEMPSLSHLNIRGNPLEQNSVREL-LEVLKGFPCLQSLGVDIPGPLGE---SAIEI 351
AF+ +PSL L++ + + +G L+ L L I
Sbjct: 155 AFNR--IPSLRRLDLGEL----KRLSYISEGAFEGLSNLRYLN------LAMCNLREIPN 202
Query: 352 LESLPTLCTLN 362
L L L L+
Sbjct: 203 LTPLIKLDELD 213
Score = 35.9 bits (83), Expect = 0.050
Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 43/165 (26%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
L+ L L N + T+E + L NL L L +N + + + K
Sbjct: 85 KHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNRL-----TTIPNGAFVYLSK 137
Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLS--NRCIHN 291
L+ N +I + + S+ LDL R +
Sbjct: 138 LKELWLRNNPIESIPSYAF---------------------NRIPSLRRLDLGELKR-LSY 175
Query: 292 LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ AF + +L +LN+ L + + L L L
Sbjct: 176 ISEGAFEG--LSNLRYLNLAMCNLRE------IPNLTPLIKLDEL 212
Score = 32.4 bits (74), Expect = 0.64
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
L ++L N L + + T L +L + L++NP C+
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDL--FTPLHHLERIHLHHNPWN--CN 294
Score = 28.9 bits (65), Expect = 7.4
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 264 DNPSSLCLRDRPLQSV--------TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
+ S + + L+ V L+L I + +F + L L + N +
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHI 100
Query: 316 EQ 317
Sbjct: 101 RT 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 49.5 bits (118), Expect = 4e-06
Identities = 25/185 (13%), Positives = 46/185 (24%), Gaps = 31/185 (16%)
Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
L +L+LS + +SL NKL +E + + +NL L N
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE---KALRFSQNLEHFDLRGNGF 249
Query: 220 LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP---L 276
C + D + + G+ C + C D P
Sbjct: 250 --HCG-TLRDFFSKNQRVQTVAKQTVKKLTGQ-NEEECTVPTLGHY-GAYCCEDLPAPFA 304
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAE-----MPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331
+ +L + + E ++ +V
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID----QVTLRKQ 360
Query: 332 CLQSL 336
+L
Sbjct: 361 AKITL 365
Score = 44.8 bits (106), Expect = 9e-05
Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 64/209 (30%)
Query: 171 LLSLNLS-------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223
L +L+L+ P ++ L N + V ++ + + ++L NN +
Sbjct: 82 LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKI---- 132
Query: 224 DHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
+ D +++ N T+NF E ++
Sbjct: 133 -TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--------------------AASSDTL 171
Query: 280 TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
L+L I+++ + L L++ N L + + + + +
Sbjct: 172 EHLNLQYNFIYDVKGQVV----FAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLR 222
Query: 340 ------IPGPLGESAIEILESLPTLCTLN 362
I + L L +
Sbjct: 223 NNKLVLIE--------KALRFSQNLEHFD 243
Score = 43.7 bits (103), Expect = 2e-04
Identities = 29/209 (13%), Positives = 59/209 (28%), Gaps = 41/209 (19%)
Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
+ +L+ + S+ + + L NK+ + + ++ L L N +
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNEI-- 156
Query: 222 KCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCG---EVYDKDN-----PSSL 269
D + LE YN + + + N
Sbjct: 157 --DTVNFAELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAFMGPEF 210
Query: 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG 329
VT + L N + + KA +L H ++RGN ++R+ +
Sbjct: 211 Q----SAAGVTWISLRNNKLVLI-EKALR--FSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Query: 330 FPCLQSLGVDIPGPLGESAIEILESLPTL 358
+Q++ L E
Sbjct: 264 ---VQTVAKQTVKKLTGQNEEECTVPTLG 289
Score = 42.5 bits (100), Expect = 6e-04
Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 61/183 (33%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN- 217
+ L+LS + F L+ L+L N L ++ L LR L LNNN
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET----LDLESLSTLRTLDLNNNY 91
Query: 218 ----PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
V ++ L N+N + +
Sbjct: 92 VQELLVGPS---------IE---TLHAANNNISR-----------------------VSC 116
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
Q ++ L+N I L + + +L+++ N ++ + EL L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFAELAASS---DTL 171
Query: 334 QSL 336
+ L
Sbjct: 172 EHL 174
Score = 38.7 bits (90), Expect = 0.008
Identities = 31/157 (19%), Positives = 48/157 (30%), Gaps = 43/157 (27%)
Query: 171 LLSLNLSS----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L LNLSS L+ L L N + QE+ ++ L NN +
Sbjct: 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYV-------QELLVGPSIETLHAANNNI- 111
Query: 221 KKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
+ + QG + + N+ T + G V
Sbjct: 112 ----SRVSCSRGQGKKNIYLANNKIT-MLRDLDEG-------------------CRSRVQ 147
Query: 281 SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
LDL I + A +L HLN++ N +
Sbjct: 148 YLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFIYD 183
Score = 36.4 bits (84), Expect = 0.046
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
+ +V LDLS + + +P L LN+ N L + L+ L
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAP--FTKLELLNLSSNVLYE------TLDLESLSTL 82
Query: 334 QSLGVDIPGPLGESAIEILESLPTLCTLN 362
++L L + ++ L P++ TL+
Sbjct: 83 RTLD------LNNNYVQELLVGPSIETLH 105
Score = 33.3 bits (76), Expect = 0.37
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 44/150 (29%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
+L +++ L L GN L I ++ L L L++N + + D
Sbjct: 25 ALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSSNVLYETLD------- 75
Query: 232 LQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNR 287
L+ L N L S+ +L +N
Sbjct: 76 LESLSTLRTLDLNNN----------------------YVQEL----LVGPSIETLHAANN 109
Query: 288 CIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
I + S + ++ + N +
Sbjct: 110 NISRV-----SCSRGQGKKNIYLANNKITM 134
Score = 31.4 bits (71), Expect = 1.7
Identities = 21/205 (10%), Positives = 49/205 (23%), Gaps = 47/205 (22%)
Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
+ ++L +L+ L GN + +K + ++ +
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQTVKK 274
Query: 220 L--KKCDHC---------------MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYD 262
L + + C + L+ G E +
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334
Query: 263 KDNPSSLCLRD-----------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR 311
+ + Q+ +L+ + + V+ +H +
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR-------AHAELD 387
Query: 312 GNPLEQNSVRELLEVLKGFPCLQSL 336
G + EL + LQ L
Sbjct: 388 GTLQQAVGQIELQHATEEQSPLQLL 412
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 48.1 bits (115), Expect = 5e-06
Identities = 48/253 (18%), Positives = 87/253 (34%), Gaps = 67/253 (26%)
Query: 116 TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLN 175
I DA + +N K +V D + ++ + ++DI +
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVTDA--VTQNELN-----SIDQIIANNSDIKS---VQ-G 63
Query: 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235
+ P++ L L GNKL ++ + LKNL L+L+ N V + L+
Sbjct: 64 IQY-LPNVTKLFLNGNKLTDIK----PLANLKNLGWLFLDENKVKD-----LSS--LKDL 111
Query: 236 PKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL 292
KL+ + ++ + + + L L + SL L N I ++
Sbjct: 112 KKLKSLSLEHNGIS------------------DINGL----VHLPQLESLYLGNNKITDI 149
Query: 293 VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD---IPGPLGESAI 349
+ + L L++ N + + L G LQ+L + I S +
Sbjct: 150 TV----LSRLTKLDTLSLEDNQISD------IVPLAGLTKLQNLYLSKNHI------SDL 193
Query: 350 EILESLPTLCTLN 362
L L L L
Sbjct: 194 RALAGLKNLDVLE 206
Score = 38.5 bits (90), Expect = 0.006
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L +L+L + LQ L L N + + + LKNL L L + L
Sbjct: 158 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECL 213
Query: 221 KK 222
K
Sbjct: 214 NK 215
Score = 37.7 bits (88), Expect = 0.011
Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 53/180 (29%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L L L L++LSL N + + + L L +L+L NN +
Sbjct: 92 LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL----VHLPQLESLYLGNNKIT 147
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
+ L KL+ + ++ + + L L
Sbjct: 148 D-----ITV--LSRLTKLDTLSLEDNQIS------------------DIVPL----AGLT 178
Query: 278 SVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ +L LS I +L A + +L L + + L +++
Sbjct: 179 KLQNLYLSKNHISDL-----RALAGLKNLDVLELFSQECLNKPI-NHQSNLVVPNTVKNT 232
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 46.6 bits (111), Expect = 1e-05
Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 57/211 (27%)
Query: 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLN 215
L + D L+S + +Q + + ++++ + NL+ L L+
Sbjct: 21 AVKQNLGKQSVTD--LVSQ---KELSGVQNFNGDNSNIQSLAGM----QFFTNLKELHLS 71
Query: 216 NNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+N + + L+ KLE + + + + + S CL
Sbjct: 72 HNQISD-----LSP--LKDLTKLEELS-----------VNRN-RLKNLNGIPSACL---- 108
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
+ L L N + + + +L L+IR N L+ + +L L+
Sbjct: 109 ----SRLFLDNNELRDT-----DSLIHLKNLEILSIRNNKLKS------IVMLGFLSKLE 153
Query: 335 SLGVD---IPGPLGESAIEILESLPTLCTLN 362
L + I + L L + ++
Sbjct: 154 VLDLHGNEI------TNTGGLTRLKKVNWID 178
Score = 36.9 bits (86), Expect = 0.017
Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 81/242 (33%)
Query: 116 TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGD------- 168
+ + + +N K +V D+ + V+ ++++I
Sbjct: 10 NQVFPDPGLANAVKQNLGKQSVTDL--VSQKELSG-----VQNFNGDNSNIQSLAGMQFF 62
Query: 169 DMLLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L L+LS L+ LS+ N+L+ + I L L+L+NN
Sbjct: 63 TNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI-----PSACLSRLFLDNNE 117
Query: 219 VLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD----- 273
+ + L LEI L +R+
Sbjct: 118 LRD-----TDS--LIHLKNLEI----------------------------LSIRNNKLKS 142
Query: 274 ----RPLQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPL--EQNSVRELLEV 326
L + LDL I N + ++ +++ G E + L +
Sbjct: 143 IVMLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197
Query: 327 LK 328
Sbjct: 198 TN 199
Score = 35.4 bits (82), Expect = 0.055
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
D L + +L + + +LV++ E+ + + N + ++ L ++ F
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVSQ----KELSGVQNFNGDNSNIQS------LAGMQFFTN 64
Query: 333 LQSLGVD---IPGPLGESAIEILESLPTLCTLN 362
L+ L + I S + L+ L L L+
Sbjct: 65 LKELHLSHNQI------SDLSPLKDLTKLEELS 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 47.4 bits (113), Expect = 1e-05
Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 39/233 (16%)
Query: 139 DILESEIHNATEKGDGTVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--E 194
L+ N K ++ + + + + S L + + N + E
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HRLLHTVKMVQNGIRPE 202
Query: 195 TVEIIVQEVTKL-KNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWA 253
+E ++ E + L+ L L +N + A L+ P L +
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLR------ELGLN--- 252
Query: 254 LGFCGEVYDKDNP------SSLC--LRDRPLQSVTSLDLSNRCIHNLVNKAFSPA---EM 302
D +++ + +L L I + +M
Sbjct: 253 ----------DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302
Query: 303 PSLSHLNIRGNPL--EQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILE 353
P L L + GN E + V E+ EV + +D L + E E
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEE 355
Score = 46.2 bits (110), Expect = 3e-05
Identities = 42/267 (15%), Positives = 86/267 (32%), Gaps = 59/267 (22%)
Query: 155 TVKWLELEDADIGDDMLLSLN----LSS---KFPDLQALSLCGNKL--ETVEIIVQEVTK 205
++ E D G L K P L + L N E ++ ++K
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 206 LKNLRALWLNNN-----------PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFG--EW 252
L L+L+NN L++ + + + N EW
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-NGSMKEW 179
Query: 253 ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN-----LVNKAFSPAEMPSLSH 307
A F + + + ++ + I L+ + A L
Sbjct: 180 AKTF------QSHRL-----------LHTVKMVQNGIRPEGIEHLLLEGL--AYCQELKV 220
Query: 308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD---IPGPLGESAIEILESL-----PTLC 359
L+++ N L LK +P L+ LG++ + G A ++++ L
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-SARG--AAAVVDAFSKLENIGLQ 277
Query: 360 TLNGVTASKILEEGKHVIDSMLQPRLP 386
TL + ++I + + +++ ++P
Sbjct: 278 TLR-LQYNEIELDAVRTLKTVIDEKMP 303
Score = 44.3 bits (105), Expect = 1e-04
Identities = 39/235 (16%), Positives = 72/235 (30%), Gaps = 44/235 (18%)
Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLR 210
+++ L+ I + + L + ++ + L GN + E + + + K+L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 211 ALWLNNNPVLKKCDHCMEDAI-----LQGCPKLEIYN--SNFTINFGEWALGFCGEVYDK 263
++ + D E L CPKL N FG A +
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN---AFGPTAQEPLIDFL-S 119
Query: 264 DNPSSLCLRDRPLQSVTSLDLSNRCIHN-----------LVNKAFSPAEMPSLSHLNIRG 312
+ + L L N + + P L +
Sbjct: 120 KHTP-----------LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168
Query: 313 NPLEQNSVRELLEVLKGFPCLQSLGV---DIPGPLG-ESAI-EILESLPTLCTLN 362
N LE S++E + + L ++ + I P G E + E L L L+
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLD 222
Score = 40.9 bits (96), Expect = 0.002
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 14/107 (13%)
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPA--------EMPSLSHLNIRGNPLEQNSVRELLEVLK 328
+ + + S+ + ++ + P L + + N + L++ L
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 329 GFPCLQSLGV---DIPGPLGESAIEILESLPTLCTLNGVTASKILEE 372
L+ L + + GP +I +L L + L
Sbjct: 120 KHTPLEHLYLHNNGL-GPQA--GAKIARALQELAVNKKAKNAPPLRS 163
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 47.6 bits (113), Expect = 2e-05
Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 52/207 (25%)
Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
+G + + L ++ L L LET E + K NL L
Sbjct: 279 YMGPNEMPIL--FPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLET---------R 326
Query: 225 HCMED----AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
+ + D + Q C +L+ + + ++ L + R L +
Sbjct: 327 NVIGDRGLEVLAQYCKQLKRLR-----------IERGADEQGMEDEEGL-VSQRGLIA-- 372
Query: 281 SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340
L+ C L ++ + + + S+ + LK + + +D
Sbjct: 373 ---LAQGC--------------QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415
Query: 341 PG-----PLGESAIEILESLPTLCTLN 362
PL +L L
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRFA 442
Score = 45.3 bits (107), Expect = 7e-05
Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 37/190 (19%)
Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRALWLNN 216
+E E+ + L++L + +L+ +++ + + E++E I + L + R + L+
Sbjct: 358 MEDEEGLVSQRGLIAL--AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415
Query: 217 NPVLKKCDHCMED---AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
+ D +++ ++L GC KL + G + D L
Sbjct: 416 EERI--TDLPLDNGVRSLLIGCKKLRRFA----------FYLRQGGLTDL----GLSYIG 459
Query: 274 RPLQSVTSLDLSN-----RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
+ +V + L + P+L L +RG S R + +
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRG------CPNLQKLEMRGCCF---SERAIAAAVT 510
Query: 329 GFPCLQSLGV 338
P L+ L V
Sbjct: 511 KLPSLRYLWV 520
Score = 43.8 bits (103), Expect = 3e-04
Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 40/228 (17%)
Query: 157 KWLELEDA-----DIGDDMLLSLN-LSSKFPDLQALSLCGN-------------KLETVE 197
+W +++ + + + LS +FP+L++L L G
Sbjct: 43 RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102
Query: 198 IIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257
+ + L+ L+++ V D ++ LE L C
Sbjct: 103 WVTEISNNLRQLKSVHFRRMIVS---DLDLDRLAKARADDLETLK-----------LDKC 148
Query: 258 GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS--PAEMPSLSHLNIRGNPL 315
L + + +L + K SL LN
Sbjct: 149 SGFTT----DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204
Query: 316 EQNSVRELLEVLKGFPCLQSLGV-DIPGPLGESAIEILESLPTLCTLN 362
+ S ++L + + L S+ V D + +L C +
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252
Score = 37.6 bits (87), Expect = 0.017
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
+W+ L D+ L+ S P+LQ L + G + I VTKL +LR LW+
Sbjct: 466 RWMLLGYVGESDEGLMEF--SRGCPNLQKLEMRGCCF-SERAIAAAVTKLPSLRYLWVQG 522
Query: 217 NPVLKKCDHCMEDAILQGCPKLEIYNSN 244
+ + +E+ S
Sbjct: 523 YRASM--TGQDLMQMARPYWNIELIPSR 548
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 47.0 bits (112), Expect = 2e-05
Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 23/191 (12%)
Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKL-KNL 209
T+ L+L D S+ + +L+L GN L ++ + ++Q + + N+
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169
Query: 210 RALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSL 269
+L L N + K + + + +++ LG + L
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVT------SLDLSANLLGLKSY-------AEL 216
Query: 270 C--LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEM--PSLSHLNIRGNPLEQNSVRELLE 325
P V SL+L C+H + + L + + + ++ S +
Sbjct: 217 AYIFSSIP-NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275
Query: 326 VLKGFPCLQSL 336
+ FP +Q +
Sbjct: 276 LGAAFPNIQKI 286
Score = 43.5 bits (103), Expect = 2e-04
Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 21/175 (12%)
Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLR 210
+V L+L +G L+ SS + +L+LC N L ++E + LK+L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256
Query: 211 ALWLNNNPVLKKCDHCMED--AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSS 268
++L+ + V + A K+ ++ + + +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKII------LVDKNGKEIHPSHSIPISN---- 306
Query: 269 LCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP---SLSHLNIRGNPLEQNSV 320
+R+ L N+C+ + ++ L PL ++
Sbjct: 307 -LIRE-LSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHH 359
Score = 42.0 bits (99), Expect = 6e-04
Identities = 41/222 (18%), Positives = 83/222 (37%), Gaps = 56/222 (25%)
Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLK-NL 209
V L+L ++ + L ++ + +L+L GN L + + +VQ + + N+
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 210 RALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSL 269
+L L+ N + K + + P ++
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTL-------------------------------AAIPFTI 111
Query: 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA---EMPSLSHLNIRGNPLEQNSVRELLEV 326
T LDL + + F A S++ LN+RGN L S EL+++
Sbjct: 112 ----------TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161
Query: 327 LKGFPC-LQSLGV---DIPGPLGESAI-EILESLP-TLCTLN 362
L P + SL + ++ + + + L S+P ++ +L+
Sbjct: 162 LAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLD 202
Score = 37.0 bits (86), Expect = 0.021
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPA---EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC- 332
VTSLDLS ++++ A S++ LN+ GN L + EL+++L P
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 333 LQSLGVDIPG-PLG-ESAIEILESLP----TLCTLN 362
+ SL ++ G L +S+ E++++L T+ L+
Sbjct: 82 VTSL--NLSGNFLSYKSSDELVKTLAAIPFTITVLD 115
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 46.4 bits (110), Expect = 2e-05
Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 44/181 (24%)
Query: 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEV--TKLKNLRALW 213
+K L + A + S FP L L L N ++ + K L+ L
Sbjct: 151 LKVLSIAQAHSLN---FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
Query: 214 LNNNPVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSL 269
L N ++ A+ +L+ +NS L D PS L
Sbjct: 208 LRNAG-METPSGVCS-ALAAARVQLQGLDLSHNS----------LRDAAGAPSCDWPSQL 255
Query: 270 ---------------CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314
L ++ LDLS N +++ SP E+P + +L+++GNP
Sbjct: 256 NSLNLSFTGLKQVPKGL----PAKLSVLDLSY----NRLDRNPSPDELPQVGNLSLKGNP 307
Query: 315 L 315
Sbjct: 308 F 308
Score = 41.4 bits (97), Expect = 9e-04
Identities = 35/202 (17%), Positives = 62/202 (30%), Gaps = 25/202 (12%)
Query: 139 DILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEI 198
D ++K L + A I +L LQ L+L ++
Sbjct: 53 DTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112
Query: 199 IVQEVTKLKNLRALWLNNNPVLKKCDH--CMEDAILQGCPKLEIYNSNFTINFGEWALGF 256
+L L L N + ++ + G L I ++
Sbjct: 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL---------- 162
Query: 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLS-NRCIHNL-VNKAFSPAEMPSLSHLNIRGNP 314
+ C + R ++++LDLS N + + A P + P+L L +R
Sbjct: 163 ----------NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 315 LEQNSVRELLEVLKGFPCLQSL 336
+E S + LQ L
Sbjct: 213 METPS-GVCSALAAARVQLQGL 233
Score = 38.3 bits (89), Expect = 0.007
Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 24/154 (15%)
Query: 167 GDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHC 226
D L+ P L+ LS+ ++V L L L++NP
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLN--FSCEQVRVFPALSTLDLSDNP-ELGERGL 191
Query: 227 MEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLD 283
+ P L+ + N+ G + + LD
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA-----------------RVQLQGLD 234
Query: 284 LSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
LS+ + + L+ LN+ L+Q
Sbjct: 235 LSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQ 267
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 46.8 bits (111), Expect = 3e-05
Identities = 24/218 (11%), Positives = 60/218 (27%), Gaps = 59/218 (27%)
Query: 171 LLSLNLS-------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+ + K L L NK+ +E L L L+ N
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE----AFGTNVKLTDLKLDYN 605
Query: 218 PVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
+++ + + ++E +N P+ +
Sbjct: 606 Q-IEE----IPEDFCAFTDQVEGLGFSHN-KLK-----------------YIPNIFNAKS 642
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAE---MPSLSHLNIRGNPLEQNSVRELLEVLKGF 330
+ + S+D S I + + + S + + N ++ + E+
Sbjct: 643 --VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ----KFPTELFATG 696
Query: 331 PCLQSLGVD------IPGPLGESAIEILESLPTLCTLN 362
+ ++ + IP + ++ L T++
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Score = 44.9 bits (106), Expect = 1e-04
Identities = 20/164 (12%), Positives = 51/164 (31%), Gaps = 18/164 (10%)
Query: 173 SLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232
L+ + + + LSL G + + + +L L+ L +
Sbjct: 318 DLDNNGR---VTGLSLAGFGAKG--RVPDAIGQLTELKVLSFGTHS-ETVSG---RLFGD 368
Query: 233 QGCPKLEIYNSNFTI--NFGEWALGFCGEVYDKD---NPSSLCLRDRPLQSVTSLDLSNR 287
+ I ++ + L + + D + + +P++ + + L +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428
Query: 288 CIHNLVNKAFS-PAE---MPSLSHLNIRGNPLEQNSVRELLEVL 327
I NL N+ + L + +P +++ E
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472
Score = 44.5 bits (105), Expect = 2e-04
Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 46/191 (24%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETV-----EIIVQEVTKLKNLRALW 213
++ LS + + + L N + ++ + L +
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Query: 214 LNNNPVLKKCDHCMEDAILQGCPKLEI----YN--SNFTINFGE----WALGFCGEVYDK 263
L N L +D P L YN S+F A G + +
Sbjct: 735 LRFNK-LTSLS---DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE 790
Query: 264 DN------PSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
N P+ + S+ L + N + K P L L+I NP
Sbjct: 791 GNRILRQWPTGIT----TCPSLIQLQIG----SNDIRK-VDEKLTPQLYILDIADNPNIS 841
Query: 318 NSVRELLEVLK 328
V + ++
Sbjct: 842 IDVTSVCPYIE 852
Score = 43.3 bits (102), Expect = 3e-04
Identities = 23/206 (11%), Positives = 58/206 (28%), Gaps = 65/206 (31%)
Query: 171 LLSLNLS----SKFP--------DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L L L + P ++ L NKL+ + I + + ++ + N
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF-NAKSVYVMGSVDFSYN- 654
Query: 219 VLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQS 278
K+ N + + ++ +
Sbjct: 655 ------------------KIGSEGRNISCSMDDYK----------------------GIN 674
Query: 279 VTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ---NSVRELLEVLKGFPCLQS 335
+++ LS I + F+ +S + + N + NS++ K L +
Sbjct: 675 ASTVTLSYNEIQKFPTELFA--TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 336 LGV------DIPGPLGESAIEILESL 355
+ + + + + L ++
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNM 758
Score = 38.7 bits (90), Expect = 0.010
Identities = 21/174 (12%), Positives = 49/174 (28%), Gaps = 33/174 (18%)
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN--PVLKKCDHCME 228
+ K + ++L N+++ + + + L+NN + + +
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMTSIPENSLKPK 720
Query: 229 DAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL 284
D + L +N ++ L ++++D+
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSL------------------SDDFRATT--LPYLSNMDV 760
Query: 285 SNRCIHNLVNKAFSPAEMPSLSHLNIRGN-PLEQNSVRELL-EVLKGFPCLQSL 336
S C + + + L IR E N + + P L L
Sbjct: 761 SYNCFSSFPTQPLN---SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811
Score = 36.0 bits (83), Expect = 0.066
Identities = 20/174 (11%), Positives = 44/174 (25%), Gaps = 31/174 (17%)
Query: 172 LSLN-LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
+ + + + + + E + LK+L + L N P + +
Sbjct: 455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF---- 510
Query: 231 ILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN 286
L P+L+ N + + + +
Sbjct: 511 -LYDLPELQSLNIACNRGISAAQLKADW--------TRLADDEDT----GPKIQIFYMGY 557
Query: 287 RCIHNL-VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
+ + + +M L L+ N + LE L L +D
Sbjct: 558 NNLEEFPASASLQ--KMVKLGLLDCVHNKVRH------LEAFGTNVKLTDLKLD 603
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 45.4 bits (107), Expect = 3e-05
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLK--NLRALWLNNNPVLKKCDHCME--DA 230
++ K P+L+ L+L GN+L++ E+ K+K L LWL+ N + A
Sbjct: 190 SIVQKAPNLKILNLSGNELKSER----ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245
Query: 231 ILQGCPKLEI 240
I + PKL
Sbjct: 246 IRERFPKLLR 255
Score = 38.8 bits (90), Expect = 0.005
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 170 MLLSLN-LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
M +L + P+L +L+L N+L ++ + V K NL+ L L+ N
Sbjct: 158 MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206
Score = 38.1 bits (88), Expect = 0.007
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
+ + SL+LSN ++ L + + + P+L LN+ GN L S RE L+ +KG L+
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERE-LDKIKGLK-LEE 224
Query: 336 LGVDIPG-PLGESA-------IEILESLPTLCTLNGV 364
L + G L ++ I E P L L+G
Sbjct: 225 L--WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 45.4 bits (108), Expect = 4e-05
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 35/163 (21%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
K L LSL N L Q +L+ L L+ N V+ M G +
Sbjct: 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----MSSN-FLGLEQ 102
Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
LE +++ + L+++ LD+S+
Sbjct: 103 LEHLDFQHSNLKQM----SEFSVF----------------LSLRNLIYLDISHTHTRVAF 142
Query: 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
N F+ + SL L + GN ++N + ++ L L
Sbjct: 143 NGIFNG--LSSLEVLKMAGNSFQENFLPDI---FTELRNLTFL 180
Score = 43.1 bits (102), Expect = 2e-04
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 41/172 (23%)
Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNP 218
L L+LS L+ L + L+ + V L+NL L +++
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTH 137
Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD-- 273
+ I G LE + ++F NF + + L L
Sbjct: 138 T-----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------TFLDLSQCQ 186
Query: 274 ---------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
L S+ L++S+ +L + + SL L+ N +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIM 236
Score = 41.5 bits (98), Expect = 7e-04
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 39/161 (24%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI 240
L+ L L N + T+ L+ L L ++ + E ++ L
Sbjct: 78 TSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIY 130
Query: 241 ----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLS-NRCIHNLVNK 295
+ G F G L S+ L ++ N N +
Sbjct: 131 LDISHTHTRVAFNG----IFNG-----------------LSSLEVLKMAGNSFQENFLPD 169
Query: 296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
F+ + +L+ L++ LE + LQ L
Sbjct: 170 IFTE--LRNLTFLDLSQCQLE--QLSP--TAFNSLSSLQVL 204
Score = 34.6 bits (80), Expect = 0.12
Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 51/139 (36%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236
++ +L L L +LE + L +L+ L +++N ++ +
Sbjct: 172 TELRNLTFLDLSQCQLEQLS---PTAFNSLSSLQVLNMSHNNFFS-----LDTFPYKCLN 223
Query: 237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKA 296
L+ LD S I +
Sbjct: 224 SLQ-----------------------------------------VLDYSLNHIMTSKKQE 242
Query: 297 FSPAEMPSLSHLNIRGNPL 315
SL+ LN+ N
Sbjct: 243 LQHFP-SSLAFLNLTQNDF 260
Score = 31.5 bits (72), Expect = 1.2
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 265 NPSSLCLRDRPLQSV--------TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
+ + + + L SV T L+L + + +L + F ++ L+ L++ N L
Sbjct: 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLS 65
Query: 317 QNSVRELLEVLKGFPCLQSL 336
+ G L+ L
Sbjct: 66 FKGCCS--QSDFGTTSLKYL 83
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 45.6 bits (109), Expect = 4e-05
Identities = 41/212 (19%), Positives = 66/212 (31%), Gaps = 72/212 (33%)
Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
+ SLNL S L L++ +K++ V + L +L +L LN N +
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQI 189
Query: 220 LKKCDHCMEDAI-LQGCPKLE---IYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRD 273
ED L L Y + T
Sbjct: 190 --------EDISPLASLTSLHYFTAYVNQITDITPVAN---------------------- 219
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
+ + SL + N I +L + + L+ L I N + + +K L
Sbjct: 220 --MTRLNSLKIGNNKITDL--SPLA--NLSQLTWLEIGTNQISD------INAVKDLTKL 267
Query: 334 QSLGVD---IPGPLGESAIEILESLPTLCTLN 362
+ L V I S I +L +L L +L
Sbjct: 268 KMLNVGSNQI------SDISVLNNLSQLNSLF 293
Score = 45.6 bits (109), Expect = 5e-05
Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 55/192 (28%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI-LQGCP 236
+ DL +LSL N++E + + L +L N + D +
Sbjct: 174 ANLTDLYSLSLNYNQIEDIS----PLASLTSLHYFTAYVNQI--------TDITPVANMT 221
Query: 237 KLE---IYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN 291
+L I N+ T L +T L++ I +
Sbjct: 222 RLNSLKIGNNKITDLSPLAN------------------------LSQLTWLEIGTNQISD 257
Query: 292 LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG-PLGESAIE 350
+ A ++ L LN+ N + + VL L SL + LG +E
Sbjct: 258 I--NAVK--DLTKLKMLNVGSNQISD------ISVLNNLSQLNSL--FLNNNQLGNEDME 305
Query: 351 ILESLPTLCTLN 362
++ L L TL
Sbjct: 306 VIGGLTNLTTLF 317
Score = 43.3 bits (103), Expect = 2e-04
Identities = 32/209 (15%), Positives = 69/209 (33%), Gaps = 65/209 (31%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L SL+L+ + L + N++ + + + L +L + NN +
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV----ANMTRLNSLKIGNNKI- 233
Query: 221 KKCDHCMEDAI-LQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
D L +L I + + + +++ L
Sbjct: 234 -------TDLSPLANLSQLTWLEIGTNQIS------------------DINAVK----DL 264
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ L++ + I ++ + + L+ L + N L E +EV+ G L +L
Sbjct: 265 TKLKMLNVGSNQISDI--SVLN--NLSQLNSLFLNNNQLGN----EDMEVIGGLTNLTTL 316
Query: 337 GVD---IPGPLGESAIEILESLPTLCTLN 362
+ I + I L SL + + +
Sbjct: 317 FLSQNHI------TDIRPLASLSKMDSAD 339
Score = 42.5 bits (101), Expect = 4e-04
Identities = 21/161 (13%), Positives = 52/161 (32%), Gaps = 50/161 (31%)
Query: 171 LLSLNLSS----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L SL + + L L + N++ + V L L+ L + +N +
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN----AVKDLTKLKMLNVGSNQI- 277
Query: 221 KKCDHCMED-AILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
D ++L +L + N+ ++ + L
Sbjct: 278 -------SDISVLNNLSQLNSLFLNNNQLG----------------NEDMEVI----GGL 310
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
++T+L LS I ++ + + + + + +++
Sbjct: 311 TNLTTLFLSQNHITDI--RPLA--SLSKMDSADFANQVIKK 347
Score = 42.1 bits (100), Expect = 6e-04
Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 58/211 (27%)
Query: 160 ELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN-- 217
E A + + + + + L + G K+ +++ + L NL L LN N
Sbjct: 23 EGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ----GIEYLTNLEYLNLNGNQI 78
Query: 218 ---PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
L L L I + T + S+L
Sbjct: 79 TDISPLSNLVK------LT---NLYIGTNKIT------------------DISALQ---- 107
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
L ++ L L+ I ++ + + + LN+ N L L L
Sbjct: 108 NLTNLRELYLNEDNISDI--SPLA--NLTKMYSLNLGANHN-----LSDLSPLSNMTGLN 158
Query: 335 SLGVD---IPGPLGESAIEILESLPTLCTLN 362
L V + + + +L L +L+
Sbjct: 159 YLTVTESKV------KDVTPIANLTDLYSLS 183
Score = 41.8 bits (99), Expect = 6e-04
Identities = 34/209 (16%), Positives = 59/209 (28%), Gaps = 66/209 (31%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L LNL+ S L L + NK+ + + L NLR L+LN + +
Sbjct: 68 LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS----ALQNLTNLRELYLNEDN-I 122
Query: 221 KKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
L K+ N N + S L +
Sbjct: 123 SDISP------LANLTKMYSLNLGANHNLSD------------------LSPLS----NM 154
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ L ++ + V A + L L++ N +E + L L
Sbjct: 155 TGLNYLTVTE----SKVKDVTPIANLTDLYSLSLNYNQIED------ISPLASLTSLHYF 204
Query: 337 GVDIPGPLGE---SAIEILESLPTLCTLN 362
+ I + ++ L +L
Sbjct: 205 T------AYVNQITDITPVANMTRLNSLK 227
Score = 41.4 bits (98), Expect = 8e-04
Identities = 24/209 (11%), Positives = 56/209 (26%), Gaps = 57/209 (27%)
Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L A I + + + L + V +L+++ L +
Sbjct: 5 LATLPAPINQ--IFPD---ADLAEGIRAVLQKASVTDVVTQ----EELESITKLVVAGEK 55
Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRD 273
V ++ ++ LE + + T
Sbjct: 56 VAS-----IQG--IEYLTNLEYLNLNGNQITDISPLSN---------------------- 86
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
L +T+L + N + + + +L L + + + + L +
Sbjct: 87 --LVKLTNLYIGT----NKITDISALQNLTNLRELYLNEDNISD------ISPLANLTKM 134
Query: 334 QSLGVDIPGPLGESAIEILESLPTLCTLN 362
SL ++ S + L ++ L L
Sbjct: 135 YSL--NLGANHNLSDLSPLSNMTGLNYLT 161
Score = 41.4 bits (98), Expect = 9e-04
Identities = 29/212 (13%), Positives = 53/212 (25%), Gaps = 72/212 (33%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN--- 217
L L L+ + + +L+L N + + ++ + L L + +
Sbjct: 112 LRELYLNEDNISDISPLANLTKMYSLNLGANHNLS---DLSPLSNMTGLNYLTVTESKVK 168
Query: 218 --PVLKKCDHCMEDAILQGCPKLEIYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRD 273
+ L L + +
Sbjct: 169 DVTPIANLTD------LY---SLSLNYNQIEDISPLAS---------------------- 197
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
L S+ I ++ + M L+ L I N + L L L
Sbjct: 198 --LTSLHYFTAYVNQITDI--TPVA--NMTRLNSLKIGNNKITD------LSPLANLSQL 245
Query: 334 QSLGVD---IPGPLGESAIEILESLPTLCTLN 362
L + I S I ++ L L LN
Sbjct: 246 TWLEIGTNQI------SDINAVKDLTKLKMLN 271
Score = 38.3 bits (90), Expect = 0.008
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 161 LEDADIGDDMLLSLNLS--SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L + ++ L + ++ +L L L N + + + L + + N
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL----ASLSKMDSADFANQV 344
Query: 219 V 219
+
Sbjct: 345 I 345
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 45.4 bits (108), Expect = 5e-05
Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 56/186 (30%)
Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
+ L+ S +L L L N L ++ L + L+ N + K
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN----YPGLVEVDLSYNELEK 262
Query: 222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNP-SSLCLRDRPLQSVT 280
+ +LE +Y +N +L L +P+ ++
Sbjct: 263 -----IMYHPFVKMQRLE-------------------RLYISNNRLVALNLYGQPIPTLK 298
Query: 281 SLDLSNRCIHNLVNKAFS------------------PAEMPSLSHLNIRGNPLEQNSVRE 322
LDLS+ + ++ + +L +L + N + NS+R
Sbjct: 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRA 358
Query: 323 LLEVLK 328
L +
Sbjct: 359 LFRNVA 364
Score = 43.5 bits (103), Expect = 2e-04
Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 45/185 (24%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+ L + P L L L N L ++ + L L ++NN
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMSNNN 152
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCG--EVYDKDNP-SSLCL 271
L++ +ED Q L+ N ++ N S+L
Sbjct: 153 -LER----IEDDTFQATTSLQNLQLSSNRLTHVDLS----LIPSLFHANVSYNLLSTL-- 201
Query: 272 RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331
+V LD S+ I+ + L+ L ++ N L L +P
Sbjct: 202 --AIPIAVEELDASHNSINVVRGPVNV-----ELTILKLQHNNLTD------TAWLLNYP 248
Query: 332 CLQSL 336
L +
Sbjct: 249 GLVEV 253
Score = 39.3 bits (92), Expect = 0.005
Identities = 35/172 (20%), Positives = 54/172 (31%), Gaps = 48/172 (27%)
Query: 172 LSLNLSSKFPD---LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCME 228
+S NL S ++ L N + V V L L L +N + +
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV-----NVELTILKLQHNNL-------TD 240
Query: 229 DAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL 284
A L P L YN I + F +Q + L +
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYH----PFVK-----------------MQRLERLYI 279
Query: 285 SNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
SN + L N P +P+L L++ N L + F L++L
Sbjct: 280 SNNRLVAL-NLYGQP--IPTLKVLDLSHNHL-----LHVERNQPQFDRLENL 323
Score = 35.4 bits (82), Expect = 0.076
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 171 LLSLNLSS-----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
L L+LS +F L+ L L N + T+++ + L+ L L++N
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL-----STHHTLKNLTLSHNDW 351
Query: 220 LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWAL-GFC 257
C+ A+ + + + +++ G C
Sbjct: 352 --DCNSLR--ALFRNVARPAVDDADQHCKIDYQLEHGLC 386
Score = 31.9 bits (73), Expect = 0.95
Identities = 13/147 (8%), Positives = 35/147 (23%), Gaps = 54/147 (36%)
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
+ L++ + ++ + + + + + + L LN+ + ++
Sbjct: 39 FEDITLNN----QKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQI-----EEIDTY 87
Query: 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH 290
++ L + I
Sbjct: 88 AFAYAHTIQ-----------------------------------------KLYMGFNAIR 106
Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
L F +P L+ L + N L
Sbjct: 107 YLPPHVFQN--VPLLTVLVLERNDLSS 131
Score = 29.6 bits (67), Expect = 4.9
Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 264 DNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVREL 323
P C+ D+ V F + + + + + + +
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--KLPA- 62
Query: 324 LEVLKGFPCLQSL 336
+L F ++ L
Sbjct: 63 -ALLDSFRQVELL 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 45.0 bits (107), Expect = 6e-05
Identities = 27/209 (12%), Positives = 60/209 (28%), Gaps = 64/209 (30%)
Query: 171 LLSLNLS-------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223
L +L+L+ P ++ L N + V ++ + + ++L NN +
Sbjct: 82 LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKI---- 132
Query: 224 DHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
+ D +++ N T+NF E A ++
Sbjct: 133 -TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------------------ASSDTL 171
Query: 280 TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
L+L I+++ + L L++ N L + + + + +
Sbjct: 172 EHLNLQYNFIYDVKGQVV----FAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLR 222
Query: 340 ------IPGPLGESAIEILESLPTLCTLN 362
I L L +
Sbjct: 223 NNKLVLIEKALR--------FSQNLEHFD 243
Score = 44.6 bits (106), Expect = 8e-05
Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 61/183 (33%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN- 217
+ L+LS + F L+ L+L N L ++ L LR L LNNN
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET----LDLESLSTLRTLDLNNNY 91
Query: 218 ----PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
V ++ L N+N + +
Sbjct: 92 VQELLVGPS---------IE---TLHAANNNISR-----------------------VSC 116
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
Q ++ L+N I L + + +L+++ N ++ + EL L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFAELAASS---DTL 171
Query: 334 QSL 336
+ L
Sbjct: 172 EHL 174
Score = 43.8 bits (104), Expect = 2e-04
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 42/216 (19%)
Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
+ +L+ + S+ + + L NK+ + + ++ L L N +
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNE-ID 157
Query: 222 KCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCG---EVYDKDN-----PSSL 269
+ + LE YN + + + N
Sbjct: 158 TVN---FAELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAFMGPEF 210
Query: 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG 329
VT + L N + + KA +L H ++RGN ++R+ +
Sbjct: 211 Q----SAAGVTWISLRNNKLVLI-EKALR--FSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Query: 330 FPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVT 365
+Q++ L E ++PTL
Sbjct: 264 ---VQTVAKQTVKKLTGQNEEEC-TVPTLGHYGAYC 295
Score = 36.5 bits (85), Expect = 0.028
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
+ +V LDLS + + +P L LN+ N L + L+ L
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAP--FTKLELLNLSSNVLYE------TLDLESLSTL 82
Query: 334 QSLGVDIPGPLGESAIEILESLPTLCTLN 362
++L L + ++ L P++ TL+
Sbjct: 83 RTLD------LNNNYVQELLVGPSIETLH 105
Score = 34.6 bits (80), Expect = 0.13
Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 47/165 (28%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
K ++ D+ + +L +++ L L GN L I ++ L L L++
Sbjct: 13 KIEKVTDSSLKQ---ALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSS 67
Query: 217 NPVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
N L + L+ L N L
Sbjct: 68 NV-LYETLD------LESLSTLRTLDLNNN----------------------YVQELL-- 96
Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
S+ +L +N I + S + ++ + N +
Sbjct: 97 --VGPSIETLHAANNNISRV-----SCSRGQGKKNIYLANNKITM 134
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 45.1 bits (107), Expect = 6e-05
Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 20/191 (10%)
Query: 183 LQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI- 240
L+ L L N L + L +L L L NP E ++ KL+I
Sbjct: 102 LEHLDLSYNYLSNLS---SSWFKPLSSLTFLNLLGNPY----KTLGETSLFSHLTKLQIL 154
Query: 241 ---YNSNFT-INFGEWA-LGFCGEVYDKDNP-SSLCLRD-RPLQSVTSLDLSNRCIHNLV 293
FT I ++A L F E+ + S + + +Q+V+ L L + L+
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214
Query: 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE-VLKGFPCLQSL-GVDIPGPLGESAIEI 351
S+ L +R L+ EL + V I +++
Sbjct: 215 EIFVDV--TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272
Query: 352 LESLPTLCTLN 362
L + L L
Sbjct: 273 LNQISGLLELE 283
Score = 42.0 bits (99), Expect = 5e-04
Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 24/160 (15%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
+ LE++ +D+ ++ L L + + I V ++ L L +
Sbjct: 177 EELEIDASDLQS---YEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRD 231
Query: 217 NPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD-RP 275
L E+ V D ++
Sbjct: 232 TD-------------LDTFHFSELSTGETN---SLIKKFTFRNVKITDESLFQVMKLLNQ 275
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
+ + L+ S + ++ + F + SL + + NP
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDR--LTSLQKIWLHTNPW 313
Score = 40.5 bits (95), Expect = 0.002
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
+ +LQAL L N + T+E + L +L L L+ N L + + +
Sbjct: 73 QRCVNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLSYNY-LSN----LSSSWFKPLSS 125
Query: 238 LEI----YNSNFTIN----FGEWALGFCGEVYDKDNPSSLCLRD-RPLQSVTSLDLSNRC 288
L N T+ F V + D + + +D L + L++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 289 IHNLVNKAFSPAEMPSLSHLNIRGNPL 315
+ + K+ + ++SHL +
Sbjct: 186 LQSYEPKSLKS--IQNVSHLILHMKQH 210
Score = 38.9 bits (91), Expect = 0.005
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 153 DGTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRA 211
+ +K + I D+ L + L ++ L L N+L++V +L +L+
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP--DGIFDRLTSLQK 305
Query: 212 LWLNNNP 218
+WL+ NP
Sbjct: 306 IWLHTNP 312
Score = 34.7 bits (80), Expect = 0.10
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L S+ LDLS + NL + F P + SL+ LN+ GNP + ++ E + LQ
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFKP--LSSLTFLNLLGNPYK--TLGE-TSLFSHLTKLQI 153
Query: 336 LGVDIPGPLGESAIEILESLPTLCTLN 362
L V + + L L L
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELE 180
Score = 30.5 bits (69), Expect = 2.3
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 156 VKWLELEDADIGDDMLLSL-----NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLR 210
V+ LEL D D+ L N K + + + L V ++ ++ L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN---QISGLL 280
Query: 211 ALWLNNN 217
L + N
Sbjct: 281 ELEFSRN 287
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 45.3 bits (107), Expect = 7e-05
Identities = 32/185 (17%), Positives = 54/185 (29%), Gaps = 45/185 (24%)
Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+ L + P L L L N L ++ L L ++NN
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNN 158
Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCG--EVYDKDNP-SSLCL 271
L++ +ED Q L+ N ++ N S+L
Sbjct: 159 -LER----IEDDTFQATTSLQNLQLSSNRLTHVDLS----LIPSLFHANVSYNLLSTL-- 207
Query: 272 RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331
+V LD S+ I+ + L+ L ++ N L L +P
Sbjct: 208 --AIPIAVEELDASHNSINVVRGPVN-----VELTILKLQHNNLTD------TAWLLNYP 254
Query: 332 CLQSL 336
L +
Sbjct: 255 GLVEV 259
Score = 44.5 bits (105), Expect = 1e-04
Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 28/172 (16%)
Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
+ L+ S +L L L N L ++ L + L+ N + K
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN----YPGLVEVDLSYNELEK 268
Query: 222 KCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNP-SSLCLRDRPL 276
+ +LE N +N + + N +
Sbjct: 269 -----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
+ +L L + I L + +L +L + N + NS+R L +
Sbjct: 324 DRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370
Score = 42.2 bits (99), Expect = 8e-04
Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 50/175 (28%)
Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
L +L LS S P L ++ N L T+ + L ++N +
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSI-- 223
Query: 222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTS 281
+ + + L++ ++N T + + L +
Sbjct: 224 ---NVVRGPVNVELTILKLQHNNLT------------------DTAWL----LNYPGLVE 258
Query: 282 LDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+DLS + ++ F M L L I N L L + P L+ L
Sbjct: 259 VDLSYNELEKIMYHPFVK--MQRLERLYISNNRL-----VALNLYGQPIPTLKVL 306
Score = 39.9 bits (93), Expect = 0.003
Identities = 35/276 (12%), Positives = 78/276 (28%), Gaps = 78/276 (28%)
Query: 99 GLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKW 158
+ R C+D++L D V ++ +++ + + K
Sbjct: 8 NVKPRQPEYKCIDSNLQYDC--------VFYDV----HIDMQTQDVYFGFEDITLNNQKI 55
Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNN 217
+ +++ + L L F ++ L+L ++E ++ ++ L++ N
Sbjct: 56 VTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEID---TYAFAYAHTIQKLYMGFN 109
Query: 218 PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD---- 273
+ + + Q P L L L
Sbjct: 110 AIRY-----LPPHVFQNVPLLT----------------------------VLVLERNDLS 136
Query: 274 -------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV 326
+T+L +SN + + + F SL +L + N L
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA--TTSLQNLQLSSNRLTHVD------- 187
Query: 327 LKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362
L P L + + + L + L+
Sbjct: 188 LSLIPSLFHAN------VSYNLLSTLAIPIAVEELD 217
Score = 34.1 bits (78), Expect = 0.24
Identities = 43/253 (16%), Positives = 76/253 (30%), Gaps = 40/253 (15%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLK------------------NLRALWLNNNPVLKK 222
P L+ L L N L VE + +L+ L+ L L++N
Sbjct: 301 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW--D 358
Query: 223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWAL-GFCGEVYDKD----------NPSSLCL 271
C+ A+ + + + +++ G C + DK S +
Sbjct: 359 CNSLR--ALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK 416
Query: 272 RDRPLQSVTSLDLSNR---CIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
R ++ D N H + + P + L N L + E ++
Sbjct: 417 VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ--GNEQLEAEVNELRAEVQQLTNEQIQ 474
Query: 329 GFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEW 388
LQ L +I L + + L + N L+E + Q R E
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLP-KDGLARS-SDNLNKVFTHLKERQAFKLRETQARRTEA 532
Query: 389 SADQPLADRVLSA 401
A Q + +
Sbjct: 533 DAKQKETEDLEQE 545
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 45.4 bits (108), Expect = 7e-05
Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 30/156 (19%)
Query: 171 LLSLNLS----SKFPD----LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
L ++ K PD L+++ N LE + E+ L L ++ +NN +
Sbjct: 197 LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP----ELQNLPFLTTIYADNNLL--- 249
Query: 223 CDHCMEDAILQGCPKLE-IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTS 281
+ P LE + + + + +N S L + P ++
Sbjct: 250 ------KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS-GLSELP-PNLYY 301
Query: 282 LDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
L+ S+ I +L PSL LN+ N L +
Sbjct: 302 LNASSNEIRSL------CDLPPSLEELNVSNNKLIE 331
Score = 44.2 bits (105), Expect = 1e-04
Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 49/171 (28%)
Query: 172 LSLN-LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
+L LS P L+ L + N+LE + E+ L+ + ++NN LKK
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEKLP----ELQNSSFLKIIDVDNNS-LKKLPDLPPS- 174
Query: 231 ILQGCPKLEIYNSNFTI--NFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC 288
L+ + N+ L +T++ N
Sbjct: 175 -LE---FIAAGNNQLEELPELQN------------------------LPFLTAIYADNNS 206
Query: 289 IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
+ L P SL + N LE+ L L+ P L ++ D
Sbjct: 207 LKKL------PDLPLSLESIVAGNNILEE------LPELQNLPFLTTIYAD 245
Score = 42.3 bits (100), Expect = 6e-04
Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 71/206 (34%)
Query: 171 LLSLNLS----SKFPD----LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN----- 217
L +++ K PD L+ ++ N+LE + E+ L L A++ +NN
Sbjct: 155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL----PELQNLPFLTAIYADNNSLKKL 210
Query: 218 PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
P L + N+ L L
Sbjct: 211 PDL-----------PLSLESIVAGNNILEE------------------LPELQN----LP 237
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337
+T++ N + L P PSL LN+R N L + EL + L L
Sbjct: 238 FLTTIYADNNLLKTL------PDLPPSLEALNVRDNYL--TDLPELPQ------SLTFLD 283
Query: 338 VDIPGPLGESAIEILESLPT-LCTLN 362
+ E+ L LP L LN
Sbjct: 284 ------VSENIFSGLSELPPNLYYLN 303
Score = 38.8 bits (91), Expect = 0.007
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 51/155 (32%)
Query: 171 LLSLNLS----SKFPD----LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
L LN+S + P L+ L N L V +NL+ L + NP L++
Sbjct: 319 LEELNVSNNKLIELPALPPRLERLIASFNHLAEVP------ELPQNLKQLHVEYNP-LRE 371
Query: 223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
I + L + + + P Q++ L
Sbjct: 372 F-----PDIPESVEDLRMNSHLAEV------------------PEL-------PQNLKQL 401
Query: 283 DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
+ + P S+ L + +
Sbjct: 402 HVETNPLREF------PDIPESVEDLRMNSERVVD 430
Score = 35.0 bits (81), Expect = 0.095
Identities = 25/163 (15%), Positives = 40/163 (24%), Gaps = 66/163 (40%)
Query: 171 LLSLNLS--------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
L L+ P L++L N L + + LK+L N
Sbjct: 73 AHELELNNLGLSSLPELPPHLESLVASCNSLTELP---ELPQSLKSLLVDNNNLKA---- 125
Query: 223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD--------- 273
+ P LE L + +
Sbjct: 126 --------LSDLPPLLE----------------------------YLGVSNNQLEKLPEL 149
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
+ + +D+ N + L P PSL + N LE
Sbjct: 150 QNSSFLKIIDVDNNSLKKL------PDLPPSLEFIAAGNNQLE 186
Score = 34.6 bits (80), Expect = 0.16
Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 57/188 (30%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
N+S+ F LQ + L + E +K+ + + +
Sbjct: 7 NVSNTF--LQEPLRHSSNLTE---MPVEAENVKSKTEYYNAWS------------EWERN 49
Query: 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
P ++ LRD + L+L+N + +L
Sbjct: 50 APPGNGEQREMAVSR---------------------LRDCLDRQAHELELNNLGLSSL-- 86
Query: 295 KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILES 354
P P L L N L E+ + L+SL V + + +
Sbjct: 87 ----PELPPHLESLVASCNSLT--------ELPELPQSLKSLLV-----DNNNLKALSDL 129
Query: 355 LPTLCTLN 362
P L L
Sbjct: 130 PPLLEYLG 137
Score = 33.0 bits (76), Expect = 0.41
Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 50/157 (31%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKL--------------KNLRALWLNNNPVL 220
L P L+AL++ N L + + Q +T L NL L ++N +
Sbjct: 251 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310
Query: 221 KKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
CD L+ +L + N+ L P+ +
Sbjct: 311 SLCDLPPS---LE---ELNVSNNKLI------EL-----------PALPP-------RLE 340
Query: 281 SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
L S + + P +L L++ NPL +
Sbjct: 341 RLIASFNHLAEV------PELPQNLKQLHVEYNPLRE 371
Score = 30.0 bits (68), Expect = 4.2
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 16/83 (19%)
Query: 171 LLSLNLSSKFPD----LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHC 226
L + ++ P+ L+ L + N L +++ L +N+ V+
Sbjct: 382 LRMNSHLAEVPELPQNLKQLHVETNPLREFP------DIPESVEDLRMNSERVVD----- 430
Query: 227 MEDAILQGCPKLEI-YNSNFTIN 248
+ + KLE + +
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 45.0 bits (107), Expect = 8e-05
Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 65/208 (31%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L SL + +L LSL GN+L+ + + L NL L L NN +
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQIS 256
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
L G KL + + + N S L L
Sbjct: 257 NLAP-------LSGLTKLTELKLGANQIS------------------NISPLA----GLT 287
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337
++T+L+L+ + ++ S + +L++L + N + + + LQ L
Sbjct: 288 ALTNLELNENQLEDI--SPIS--NLKNLTYLTLYFNNISD------ISPVSSLTKLQRLF 337
Query: 338 VD---IPGPLGESAIEILESLPTLCTLN 362
+ S + L +L + L+
Sbjct: 338 FYNNKV------SDVSSLANLTNINWLS 359
Score = 44.2 bits (105), Expect = 2e-04
Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 66/208 (31%)
Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
L L+ + L+ L + NK+ + ++ KL NL +L NN +
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL----AKLTNLESLIATNNQI-- 211
Query: 222 KCDHCMEDAI-LQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
D L L+ + + + +L L
Sbjct: 212 ------SDITPLGILTNLDELSLNGNQLK------------------DIGTLA----SLT 243
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337
++T LDL+N I NL S + L+ L + N + + L G L +L
Sbjct: 244 NLTDLDLANNQISNL--APLS--GLTKLTELKLGANQISN------ISPLAGLTALTNLE 293
Query: 338 VD---IPGPLGESAIEILESLPTLCTLN 362
++ + I + +L L L
Sbjct: 294 LNENQL------EDISPISNLKNLTYLT 315
Score = 43.8 bits (104), Expect = 2e-04
Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 70/210 (33%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN--- 217
L +N S L + + N++ + + L NL L L NN
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT----PLANLTNLTGLTLFNNQIT 125
Query: 218 --PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
LK + L +LE+ ++ + + S+L
Sbjct: 126 DIDPLKNLTN------LN---RLELSSNTIS------------------DISALS----G 154
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L S+ L N+ V A + +L L+I N + + VL L+S
Sbjct: 155 LTSLQQLSFGNQ-----VTDLKPLANLTTLERLDISSNKVSD------ISVLAKLTNLES 203
Query: 336 LGVDIPGPLGE---SAIEILESLPTLCTLN 362
L S I L L L L+
Sbjct: 204 LI------ATNNQISDITPLGILTNLDELS 227
Score = 43.4 bits (103), Expect = 3e-04
Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 66/208 (31%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L L L +L L L N + + + + L +L+ L N
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL----SGLTSLQQLSFGNQVT- 168
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
+ L LE I ++ + + S L L
Sbjct: 169 -------DLKPLANLTTLERLDISSNKVS------------------DISVLA----KLT 199
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337
++ SL +N N ++ + +L L++ GN L+ + L L L
Sbjct: 200 NLESLIATN----NQISDITPLGILTNLDELSLNGNQLKD------IGTLASLTNLTDLD 249
Query: 338 VD---IPGPLGESAIEILESLPTLCTLN 362
+ I S + L L L L
Sbjct: 250 LANNQI------SNLAPLSGLTKLTELK 271
Score = 42.3 bits (100), Expect = 7e-04
Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 74/212 (34%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L+ + ++ + +L L+L N++ ++ + L NL L L++N +
Sbjct: 92 LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL----KNLTNLNRLELSSNTI- 146
Query: 221 KKCDHCMEDAILQGCPKLE-IYNSN---FTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
+ + L G L+ + N L
Sbjct: 147 ------SDISALSGLTSLQQLSFGNQVTDLKPLAN------------------------L 176
Query: 277 QSVTSLDLSN---RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
++ LD+S+ I L + +L L N + + L L
Sbjct: 177 TTLERLDISSNKVSDISVLAK-------LTNLESLIATNNQISD------ITPLGILTNL 223
Query: 334 QSLGVD---IPGPLGESAIEILESLPTLCTLN 362
L ++ + I L SL L L+
Sbjct: 224 DELSLNGNQL------KDIGTLASLTNLTDLD 249
Score = 41.5 bits (98), Expect = 0.001
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 56/209 (26%)
Query: 160 ELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
E +G + + + L +++++ V L NL + +NN +
Sbjct: 25 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQL 80
Query: 220 LKKCDHCMEDAI-LQGCPKLE---IYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRD 273
D L+ KL + N+
Sbjct: 81 --------TDITPLKNLTKLVDILMNNNQIADITPLAN---------------------- 110
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
L ++T L L N I ++ + +L+ L + N + + L G L
Sbjct: 111 --LTNLTGLTLFNNQITDI--DPLK--NLTNLNRLELSSNTISD------ISALSGLTSL 158
Query: 334 QSLGVDIPGPLGESAIEILESLPTLCTLN 362
Q L + ++ L +L TL L+
Sbjct: 159 QQLSFGN----QVTDLKPLANLTTLERLD 183
Score = 41.1 bits (97), Expect = 0.001
Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 60/181 (33%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L L+L+ S L L L N++ + + L L L LN N +
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL----AGLTALTNLELNENQL- 299
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ + + L +Y +N +
Sbjct: 300 ------EDISPISNLKNLTYLTLYFNNISDISPVSS------------------------ 329
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L + L N N V+ S A + +++ L+ N + L L +
Sbjct: 330 LTKLQRLFFYN----NKVSDVSSLANLTNINWLSAGHNQISD------LTPLANLTRITQ 379
Query: 336 L 336
L
Sbjct: 380 L 380
Score = 40.7 bits (96), Expect = 0.002
Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 65/208 (31%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L L+L+ + +L L L N++ + ++ L L L L N +
Sbjct: 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQIS 278
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
L G L + + + S + L+
Sbjct: 279 NISP-------LAGLTALTNLELNENQLE------------------DISPIS----NLK 309
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337
++T L L I ++ S + L L N + + L + L
Sbjct: 310 NLTYLTLYFNNISDI--SPVS--SLTKLQRLFFYNNKVSD------VSSLANLTNINWLS 359
Query: 338 VD---IPGPLGESAIEILESLPTLCTLN 362
I S + L +L + L
Sbjct: 360 AGHNQI------SDLTPLANLTRITQLG 381
Score = 40.3 bits (95), Expect = 0.003
Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 54/165 (32%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L L L + L L L N+LE + I + LKNL L L N +
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI----SNLKNLTYLTLYFNNI- 321
Query: 221 KKCDHCMEDAI-LQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
D + KL+ YN+ + + SSL L
Sbjct: 322 -------SDISPVSSLTKLQRLFFYNNKVS------------------DVSSLA----NL 352
Query: 277 QSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSV 320
++ L + I +L +P A + ++ L + V
Sbjct: 353 TNINWLSAGHNQISDL-----TPLANLTRITQLGLNDQAWTNAPV 392
Score = 39.2 bits (92), Expect = 0.006
Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 50/163 (30%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L L L S LQ L NK+ V + L N+ L +N +
Sbjct: 311 LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSL----ANLTNINWLSAGHNQI- 365
Query: 221 KKCDHCMEDAI-LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
D L ++ ++ D + P+
Sbjct: 366 -------SDLTPLANLTRIT-------------------QLGLNDQA----WTNAPVNYK 395
Query: 280 TSLDLSNRCIHNLVNKAFSPAE---MPSLSHLNIRGNPLEQNS 319
++ + N + N+ +PA S + +I N +
Sbjct: 396 ANVSIPN-TVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437
Score = 39.2 bits (92), Expect = 0.006
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
L+ ++ + ++ + ++ LS N++ + + L + L LN+
Sbjct: 333 LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT----PLANLTRITQLGLNDQAW 387
Score = 36.5 bits (85), Expect = 0.036
Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 70/210 (33%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L L LS S LQ LS GN++ ++ + L L L +++N +
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLK----PLANLTTLERLDISSNK-V 189
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+L LE N+ + G
Sbjct: 190 SDIS------VLAKLTNLESLIATNNQISDITPLGI------------------------ 219
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L ++ L L+ N + + A + +L+ L++ N + L L G L
Sbjct: 220 LTNLDELSLNG----NQLKDIGTLASLTNLTDLDLANNQISN------LAPLSGLTKLTE 269
Query: 336 LGVD---IPGPLGESAIEILESLPTLCTLN 362
L + I S I L L L L
Sbjct: 270 LKLGANQI------SNISPLAGLTALTNLE 293
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 45.0 bits (107), Expect = 1e-04
Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 42/162 (25%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
N ++ LS NKL+ + + + + + A+ + N +
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNE-------------IGS 416
Query: 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
+ +V+S++LSN I
Sbjct: 417 VDGKNFDPL----------------------DPTPFK----GINVSSINLSNNQISKFPK 450
Query: 295 KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ FS LS +N+ GN L + L + + F L
Sbjct: 451 ELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490
Score = 42.7 bits (101), Expect = 5e-04
Identities = 25/184 (13%), Positives = 48/184 (26%), Gaps = 20/184 (10%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYN 242
+ LSL G + + +L L L L ++ K + + E
Sbjct: 83 VTGLSLEGFGASG--RVPDAIGQLTELEVLALGSHG-EKVNERLFGPKGISANMSDEQKQ 139
Query: 243 SNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ----SVTSLDLSNRCIHNLVNKAFS 298
+ E + + C+ P Q + + L + I L N
Sbjct: 140 KMRMHYQKTFVDYDPREDF--SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197
Query: 299 -PAE---MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILES 354
+ L + +P ++ E E + Q L+
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWE-NENSEYAQQYKT-EDLKWDN-----LKD 250
Query: 355 LPTL 358
L +
Sbjct: 251 LTDV 254
Score = 42.3 bits (100), Expect = 6e-04
Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 65/174 (37%)
Query: 170 MLLSLNLS-------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
+L S++L + P L + L N + L+ + N
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK---FPTQPLNSSTLKGFGIRN 545
Query: 217 NPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
+ + EW P + L
Sbjct: 546 Q--------------------RDAQGNRTL---REW-------------PEGITL----C 565
Query: 277 QSVTSLDLSNRCIHNLVNK--AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
S+T L + + N + P++S L+I+ NP + + ++
Sbjct: 566 PSLTQLQIGS-------NDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIE 612
Score = 40.4 bits (95), Expect = 0.002
Identities = 25/213 (11%), Positives = 53/213 (24%), Gaps = 43/213 (20%)
Query: 131 NGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLS--LNLSSKFPDLQALSL 188
+ + D + +L I D S +
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190
Query: 189 CGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYN-SNFTI 247
N + V + V +L LR ++ N+P E + N
Sbjct: 191 LSNNITFVS---KAVMRLTKLRQFYMGNSP-------------FVAENICEAWENENSEY 234
Query: 248 NFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE---MPS 304
L+ +T +++ N + K P +P
Sbjct: 235 AQQYKTE-----------DLKWD----NLKDLTDVEVYN---CPNLTKL--PTFLKALPE 274
Query: 305 LSHLNIRGNPLEQ-NSVRELLEVLKGFPCLQSL 336
+ +N+ N +++ + L P + +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKI 307
Score = 38.9 bits (91), Expect = 0.008
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 50/173 (28%)
Query: 171 LLSLNLS----SKFPD---------LQALSLCGNKLETVEI-----IVQEVTKLKNLRAL 212
+ +L+ + P+ + A+ N++ +V+ + K N+ ++
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 213 WLNNN-----PVLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKD 264
L+NN P + L + + T KD
Sbjct: 439 NLSNNQISKFP----------KELFSTGSPLSSINLMGNMLT--------EIPKNSL-KD 479
Query: 265 NPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
+ +TS+DL + L + F +P L +++ N +
Sbjct: 480 ENENFKN----TYLLTSIDLRFNKLTKLSD-DFRATTLPYLVGIDLSYNSFSK 527
Score = 35.0 bits (81), Expect = 0.13
Identities = 30/224 (13%), Positives = 69/224 (30%), Gaps = 59/224 (26%)
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN------PVLKKC- 223
L + K +Q + + N L+T + + K+K L L N P
Sbjct: 298 LADAPVGEK---IQIIYIGYNNLKTFPVE-TSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353
Query: 224 -------DHCM----EDAILQGCPKLEI---YNSNFTINFGEWALGFCGEVYDKDNPSSL 269
+ ++E ++ P+
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-----------------YIPNIF 396
Query: 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSP-----AEMPSLSHLNIRGNPLEQNSVRELL 324
+ + ++++D S I ++ K F P + ++S +N+ N + +
Sbjct: 397 DAKS--VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS----KFPK 450
Query: 325 EVLKGFPCLQSLGV------DIPGPLGESAIEILESLPTLCTLN 362
E+ L S+ + +IP + E ++ L +++
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494
Score = 33.5 bits (77), Expect = 0.36
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 17/68 (25%)
Query: 161 LEDADIGDDMLLSLN-LSSKFPD-------LQALSLCGNKLETV--EIIVQEVTKLKNLR 210
L+ I + N ++P+ L L + N + V +I N+
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-------TPNIS 590
Query: 211 ALWLNNNP 218
L + +NP
Sbjct: 591 VLDIKDNP 598
Score = 33.1 bits (76), Expect = 0.43
Identities = 10/87 (11%), Positives = 21/87 (24%), Gaps = 6/87 (6%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
VT L L V A ++ L L + + + N + + +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIG--QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 336 LGVDIPGPLGESAIEILESLPTLCTLN 362
++ P +
Sbjct: 138 KQKMRMHYQK----TFVDYDPREDFSD 160
Score = 32.3 bits (74), Expect = 0.83
Identities = 24/205 (11%), Positives = 51/205 (24%), Gaps = 64/205 (31%)
Query: 171 LLSLNLSS-----------KFPDLQALSLCGNKLETVEI-----------------IVQE 202
+ S + L+ + + I +
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244
Query: 203 VTKLKNLRALWLNNNPVLKKCDHCMEDAI---LQGCPKLEI----YNSNFTINFGEWALG 255
LK+L + + N P L K + L+ P++++ N + +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTK--------LPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL-VNKAFSPAEMPSLSHLNIRGNP 314
+ + + + + + + V + +M L L N
Sbjct: 297 ---------ALADAPV----GEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQ 341
Query: 315 LEQNSVRELLEVLKGFPCLQSLGVD 339
LE L L SL +
Sbjct: 342 LE-----GKLPAFGSEIKLASLNLA 361
Score = 30.0 bits (68), Expect = 4.0
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 13/66 (19%)
Query: 170 MLLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWL--NNNP 218
L L + P++ L + N + I + V L +
Sbjct: 567 SLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNIS--IDLSYVCPYIEAGMYMLFYDKTQ 624
Query: 219 VLKKCD 224
++ CD
Sbjct: 625 DIRGCD 630
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 44.7 bits (106), Expect = 1e-04
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 42/165 (25%)
Query: 157 KWLELED----ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRAL 212
L+L + I + L +L+ L+L ++ + +T L L L
Sbjct: 174 MRLDLGELKKLEYISEGAFEGL------FNLKYLNLGMCNIKDM----PNLTPLVGLEEL 223
Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLE-IY-NSNFTINFGEWALGFCGEVYDKDNPSSLC 270
++ N + G L+ ++ ++ A
Sbjct: 224 EMSGNHF-----PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF---------------- 262
Query: 271 LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
L S+ L+L++ + +L + F+P + L L++ NP
Sbjct: 263 ---DGLASLVELNLAHNNLSSLPHDLFTP--LRYLVELHLHHNPW 302
Score = 44.4 bits (105), Expect = 1e-04
Identities = 36/201 (17%), Positives = 55/201 (27%), Gaps = 46/201 (22%)
Query: 181 PDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
L L L N L + L LR LWL NNP+ + P L
Sbjct: 123 ASLNTLELFDNWLTVIP---SGAFEYLSKLRELWLRNNPI-----ESIPSYAFNRVPSLM 174
Query: 240 ---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD---------RPLQSVTSLDLSNR 287
+ E A N L L PL + L++S
Sbjct: 175 RLDLGELKKLEYISEGAFEGLF------NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228
Query: 288 CIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD------IP 341
+ +F + SL L + + + + G L L + +P
Sbjct: 229 HFPEIRPGSFHG--LSSLKKLWVMNSQVS--LIER--NAFDGLASLVELNLAHNNLSSLP 282
Query: 342 GPLGESAIEILESLPTLCTLN 362
++ L L L+
Sbjct: 283 H-------DLFTPLRYLVELH 296
Score = 39.3 bits (92), Expect = 0.004
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 48/191 (25%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
+ + L+L N ++ ++ L +L L L N + +E G L
Sbjct: 74 PSNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSI-----RQIEVGAFNGLASLN 126
Query: 240 I----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295
N I G A L + L L N I ++ +
Sbjct: 127 TLELFDNWLTVIPSG--AF-------------------EYLSKLRELWLRNNPIESIPSY 165
Query: 296 AFSPAEMPSLSHLNIRGNPLEQNSVREL-LEVLKGFPCLQSLGVDIPGPLGE---SAIEI 351
AF+ +PSL L++ + + +G L+ L LG +
Sbjct: 166 AFNR--VPSLMRLDLGEL----KKLEYISEGAFEGLFNLKYLN------LGMCNIKDMPN 213
Query: 352 LESLPTLCTLN 362
L L L L
Sbjct: 214 LTPLVGLEELE 224
Score = 35.9 bits (83), Expect = 0.060
Identities = 35/212 (16%), Positives = 59/212 (27%), Gaps = 62/212 (29%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN-------------PVLKKCD 224
L+ L L N + +E V L +L L L +N L++
Sbjct: 96 RHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153
Query: 225 ------HCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ P L + E A
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-------------------EG 194
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L ++ L+L I ++ +P + L L + GN +R G L+
Sbjct: 195 LFNLKYLNLGMCNIKDM--PNLTP--LVGLEELEMSGNHFP--EIRP--GSFHGLSSLKK 246
Query: 336 LGVDIPGPLGESAIEILES-----LPTLCTLN 362
L + S + ++E L +L LN
Sbjct: 247 LW------VMNSQVSLIERNAFDGLASLVELN 272
Score = 28.9 bits (65), Expect = 8.7
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 264 DNPSSLCLRDRPLQSV--------TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
+ S + R L V L+L I + F + L L + N +
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRH--LHHLEVLQLGRNSI 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 44.7 bits (105), Expect = 1e-04
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
LE D+ L +++ + P LQ L LC N+L+ I Q + L L L N +
Sbjct: 488 LEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLC 546
Query: 221 KKCDHCMEDAILQGCPKLE 239
++ ++ + + P +
Sbjct: 547 QEEGI--QERLAEMLPSVS 563
Score = 44.0 bits (103), Expect = 2e-04
Identities = 28/173 (16%), Positives = 48/173 (27%), Gaps = 55/173 (31%)
Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
+ L L + + L L N+L + + L+ L L ++N L+ D
Sbjct: 447 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQASDNA-LENVD 502
Query: 225 HCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL 284
+ P+L+ L L
Sbjct: 503 G------VANLPRLQE-----------------------------------------LLL 515
Query: 285 SNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
N + A P P L LN++GN L + + P + S+
Sbjct: 516 CNNRLQQS--AAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSI 565
Score = 38.2 bits (88), Expect = 0.011
Identities = 44/241 (18%), Positives = 66/241 (27%), Gaps = 57/241 (23%)
Query: 158 WLELEDADIGDDMLLSLNLSSKFPD------LQALSLCGNKLETVEIIVQEVTKLKNLRA 211
+ + +LL D L L K ++ E+ K L+
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ---SELESCKELQE 376
Query: 212 LWLNNNPVLKKCDHCM--------EDAILQGCPKLE----IYNSNFTINFGEWALGFCGE 259
L N L M E LQ L+ + + ++ L
Sbjct: 377 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436
Query: 260 VYDKDNPSSLCLRDRPLQSV---------TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310
+ + L L + L + T LDLS+ + L + A + L L
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP---ALAALRCLEVLQA 493
Query: 311 RGNPLEQNSVRELLEVLKGFPCLQSLGV---------DIPGPLGESAIEILESLPTLCTL 361
N LE + G L L AI+ L S P L L
Sbjct: 494 SDNALEN---------VDGVANLPRLQELLLCNNRLQQSA------AIQPLVSCPRLVLL 538
Query: 362 N 362
N
Sbjct: 539 N 539
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 44.2 bits (105), Expect = 1e-04
Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 53/181 (29%)
Query: 171 LLSLNLSS----KFPD-------LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN-- 217
++L L S +FPD LQ +++ L + + + L L L N
Sbjct: 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME---LPDTMQQFAGLETLTLARNPL 139
Query: 218 ----PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
+ + + + ++ CP+L + D
Sbjct: 140 RALPASIASL-NRLRELSIRACPELTE---------------LPEPLASTDASGEHQG-- 181
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAE---MPSLSHLNIRGNPLEQ--NSVREL--LEV 326
L ++ SL L I +L PA + +L L IR +PL ++ L LE
Sbjct: 182 --LVNLQSLRLEWTGIRSL------PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233
Query: 327 L 327
L
Sbjct: 234 L 234
Score = 28.4 bits (64), Expect = 9.8
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 175 NLSSKFPDLQALSLCG-NKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
+ L+ L L + L T + ++ +L L L L L +
Sbjct: 251 GRAP----LKRLILKDCSNLLT---LPLDIHRLTQLEKLDLRGCVNLSR 292
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 43.5 bits (103), Expect = 2e-04
Identities = 44/251 (17%), Positives = 78/251 (31%), Gaps = 63/251 (25%)
Query: 116 TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLN 175
I A+ + KSNV D + + L + +
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVTDT--VTQADLD-----GITTLSAFGTGVTT-----IE 57
Query: 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235
+L L L N++ + + L + L L+ NP+ + + G
Sbjct: 58 GVQYLNNLIGLELKDNQITDLA----PLKNLTKITELELSGNPL-------KNVSAIAGL 106
Query: 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295
++ T++ + + + L L ++ L L I N+
Sbjct: 107 QSIK------TLDLTSTQIT---------DVTPLAG----LSNLQVLYLDLNQITNI--- 144
Query: 296 AFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD---IPGPLGESAIEI 351
SP A + +L +L+I + L L L +L D I S I
Sbjct: 145 --SPLAGLTNLQYLSIGNAQVSD------LTPLANLSKLTTLKADDNKI------SDISP 190
Query: 352 LESLPTLCTLN 362
L SLP L ++
Sbjct: 191 LASLPNLIEVH 201
Score = 41.6 bits (98), Expect = 7e-04
Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 70/241 (29%)
Query: 116 TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGD------- 168
TD + G+ + + V I + + LEL+D I D
Sbjct: 32 TDTVTQADLDGITTLSAFGTGVTTI--EGVQYLN-----NLIGLELKDNQITDLAPLKNL 84
Query: 169 DMLLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+ L LS + ++ L L ++ V + L NL+ L+L+ N
Sbjct: 85 TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQ 140
Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ + L G L+ I N+ + + + L
Sbjct: 141 ITN-----ISP--LAGLTNLQYLSIGNAQVS------------------DLTPL----AN 171
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L +T+L + I ++ A +P+L ++++ N + + L L
Sbjct: 172 LSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISD------VSPLANTSNLFI 221
Query: 336 L 336
+
Sbjct: 222 V 222
Score = 38.1 bits (89), Expect = 0.010
Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 42/172 (24%)
Query: 160 ELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
++ D+ + + + +LQ L L N++ + + L NL+ L + N
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQ- 162
Query: 220 LKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
+ L KL ++ + + S L L
Sbjct: 163 VSDLTP------LANLSKLTTLKADDNKIS------------------DISPLA----SL 194
Query: 277 QSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVL 327
++ + L N I ++ SP A +L + + + V ++
Sbjct: 195 PNLIEVHLKNNQISDV-----SPLANTSNLFIVTLTNQTITNQPVFYNNNLV 241
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 43.6 bits (103), Expect = 2e-04
Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 19/158 (12%)
Query: 166 IGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT------KLKNLRALWLNNNPV 219
I ++ LL+ L L L+ + K ++ L L+ N
Sbjct: 169 ICEEDLLNFQGKH----FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-- 222
Query: 220 LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
M +I + + ++ + +P + + V
Sbjct: 223 --GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF---KDPDNFTFKGLEASGV 277
Query: 280 TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
+ DLS I L+ FS L L + N + +
Sbjct: 278 KTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINK 313
Score = 42.4 bits (100), Expect = 6e-04
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 34/142 (23%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
S F DL+ L+L N++ ++ L +L L L+ N L ++ + + K
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQN-FLGS----IDSRMFENLDK 348
Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
LE+ YN + + L ++ L L + ++
Sbjct: 349 LEVLDLSYNHIRALGDQ---------SFLG------------LPNLKELALDTNQLKSVP 387
Query: 294 NKAFSPAEMPSLSHLNIRGNPL 315
+ F + SL + + NP
Sbjct: 388 DGIFDR--LTSLQKIWLHTNPW 407
Score = 39.3 bits (92), Expect = 0.005
Identities = 24/189 (12%), Positives = 50/189 (26%), Gaps = 42/189 (22%)
Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKL 238
L+ L L N ++ ++ ++ L L N V + + L
Sbjct: 127 PLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKV-----KSICEEDLLNFQGK 180
Query: 239 E------IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTS----------- 281
+ +N CG + + ++L L + +
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 282 -------------LDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE-VL 327
+ + N F E + + L ++ + LL+ V
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD-----LSKSKIFALLKSVF 295
Query: 328 KGFPCLQSL 336
F L+ L
Sbjct: 296 SHFTDLEQL 304
Score = 38.2 bits (89), Expect = 0.011
Identities = 29/145 (20%), Positives = 43/145 (29%), Gaps = 36/145 (24%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236
S+ DLQ L + V I L +L L L+ N L+ +E G
Sbjct: 51 SRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKLDYNQFLQ-----LETGAFNGLA 103
Query: 237 KLEI--YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD---RPLQSVTSLDLSNRCIHN 291
LE+ N L +PL S+ L L + I
Sbjct: 104 NLEVLTLTQC--------------------NLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 292 LVNK-AFSPAEMPSLSHLNIRGNPL 315
+ F M L++ N +
Sbjct: 144 IQPASFFLN--MRRFHVLDLTFNKV 166
Score = 34.7 bits (80), Expect = 0.11
Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 20/195 (10%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
+ +L+ L+L L+ + L +L L L +N + +
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN----NIKKIQPASFFLNMRR 155
Query: 238 LEI---YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
+ + C E N L S+T D++ +
Sbjct: 156 FHVLDLTFNKVKS--------ICEEDL--LNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Query: 295 KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILES 354
+ S++ L++ GN ++ S+ + +QSL + +G S
Sbjct: 206 GNPF--KNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 355 LPTLCTLNGVTASKI 369
P T G+ AS +
Sbjct: 263 DPDNFTFKGLEASGV 277
Score = 32.0 bits (73), Expect = 0.99
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 171 LLSLNLSS------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
LL LNLS L+ L L N + + L NL+ L L+ N
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS--FLGLPNLKELALDTN 381
Score = 31.6 bits (72), Expect = 1.0
Identities = 25/167 (14%), Positives = 46/167 (27%), Gaps = 33/167 (19%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
L L L N+ +E L NL L L + +
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGA--FNGLANLEVLTLTQC---NLDGAVLSGNFFKPLTS 130
Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
LE+ N+ I P+S ++ LDL+ + ++
Sbjct: 131 LEMLVLRDNNIKKI-----------------QPASF---FLNMRRFHVLDLTFNKVKSIC 170
Query: 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP----CLQSL 336
+ + + L + L+ + L G P + +L
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 43.1 bits (102), Expect = 2e-04
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 32/150 (21%)
Query: 181 PDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
L L L L+ + + L L+ L+L +N + + D + L
Sbjct: 105 GRLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNAL-----QALPDDTFRDLGNLT 156
Query: 240 ---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD-----------RPLQSVTSLDLS 285
++ + + + E A + L L R L + +L L
Sbjct: 157 HLFLHGNRIS-SVPERAFRGLHSL------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 286 NRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
+ L +A +P + +L +L + NP
Sbjct: 210 ANNLSALPTEALAP--LRALQYLRLNDNPW 237
Score = 41.5 bits (98), Expect = 6e-04
Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 37/163 (22%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
+L L L N L ++ T L L L L++N L+ ++ A G +
Sbjct: 53 RACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRS----VDPATFHGLGR 106
Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
L + G F G L ++ L L + + L
Sbjct: 107 LHTLHLDRCGLQELGPG----LFRG-----------------LAALQYLYLQDNALQALP 145
Query: 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ F + +L+HL + GN + SV E +G L L
Sbjct: 146 DDTFRD--LGNLTHLFLHGNRIS--SVPE--RAFRGLHSLDRL 182
Score = 33.8 bits (78), Expect = 0.22
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 31/139 (22%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
Q + L GN++ + +NL LWL++N + ++ A G LE
Sbjct: 31 PAASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVL-----ARIDAAAFTGLALLE 83
Query: 240 IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD---RPLQSVTSLDLSNRCIHNLVNKA 296
++ DN + L + +L L + L
Sbjct: 84 -------------------QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124
Query: 297 FSPAEMPSLSHLNIRGNPL 315
F + +L +L ++ N L
Sbjct: 125 F--RGLAALQYLYLQDNAL 141
Score = 30.0 bits (68), Expect = 3.7
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 11/64 (17%)
Query: 157 KWLELED---ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALW 213
L L + + + L L L L N++ V L L L+
Sbjct: 156 THLFLHGNRISSVPERAFRGL------HSLDRLLLHQNRVAHVHPHA--FRDLGRLMTLY 207
Query: 214 LNNN 217
L N
Sbjct: 208 LFAN 211
Score = 28.8 bits (65), Expect = 7.6
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE-VLKGFPCLQSL 336
+ + L I ++ +F +L+ L L N + + G L+ L
Sbjct: 33 ASQRIFLHGNRISHVPAASFRA--CRNLTILW-----LHSNVLARIDAAAFTGLALLEQL 85
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 41.9 bits (99), Expect = 3e-04
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEM----PSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
V + ++ V A AEM +L LN+ N + + + L+E L+
Sbjct: 65 TYVKKFSIVGTRSNDPVAFAL--AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTS 122
Query: 333 LQSLGVD----IPGPLGESAI-EILESLPTLCTLN 362
L L +D G E I +LE TL
Sbjct: 123 LIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFG 157
Score = 28.4 bits (64), Expect = 7.2
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 278 SVTSLDLSN-RCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
+ ++L+N I KA + A + +I G L E+LK L+
Sbjct: 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96
Query: 335 SLGVD---IPGPLGESAI-EILESLPTLCTLN 362
SL V+ I G A+ E L+S +L L
Sbjct: 97 SLNVESNFI-SGSGILALVEALQSNTSLIELR 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 43.1 bits (102), Expect = 3e-04
Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 46/168 (27%)
Query: 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L + D + ++ + L L NK+ +++ ++ K L L + N +
Sbjct: 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV-----SQNKLLNRLNCDTNNI- 203
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFT-INFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
L +L ++ T I+ PL
Sbjct: 204 -------TKLDLNQNIQLTFLDCSSNKLTEIDVT------------------------PL 232
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELL 324
+T D S + L + + L+ L+ L + +
Sbjct: 233 TQLTYFDCSVNPLTEL-----DVSTLSKLTTLHCIQTDLLEIDLTHNT 275
Score = 41.6 bits (98), Expect = 0.001
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
+L D + L+LS + P L L L +L +++ + L++L N
Sbjct: 295 HNTQLYLLDCQAAGITELDLS-QNPKLVYLYLNNTELTELDV-----SHNTKLKSLSCVN 348
Query: 217 N-----PVLKKCDH----CMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPS 267
+ K + PK + N++ TI L G + P
Sbjct: 349 AHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI-EPG 407
Query: 268 SLCLRDRPLQSVTSLDLS 285
+ D+ ++T +LS
Sbjct: 408 DGGVYDQATNTITWENLS 425
Score = 40.4 bits (95), Expect = 0.002
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 52/181 (28%)
Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L SL+ K L L N + T+++ ++ NL L ++N
Sbjct: 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDL-----SQNTNLTYLACDSNK-- 96
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPS--SLCLRDRP 275
+ + + KL + T ++ NP L
Sbjct: 97 ------LTNLDVTPLTKLTYLNCDTNKLT------------KLDVSQNPLLTYLNCARNT 138
Query: 276 LQSVTSLDLSN-------RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVREL--LEV 326
L T +D+S+ C N L+ L+ N + + V + L
Sbjct: 139 L---TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNR 195
Query: 327 L 327
L
Sbjct: 196 L 196
Score = 31.6 bits (72), Expect = 1.1
Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 55/212 (25%)
Query: 173 SLNLSSKFPD--LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV--LKKCDHCME 228
+ + + FPD + +++ + I +L L +L +N+ + +
Sbjct: 8 TQSFNDWFPDDNFASEVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDMTG------ 59
Query: 229 DAILQGCPKLE---IYNSNFT-INFGEWALGFCGEVYDKDNPS--SLCLRD--------R 274
++ L ++N T ++ N + L
Sbjct: 60 ---IEKLTGLTKLICTSNNITTLDLS-------------QNTNLTYLACDSNKLTNLDVT 103
Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
PL +T L+ + L ++ P L++LN N L + + L
Sbjct: 104 PLTKLTYLNCDTNKLTKL-----DVSQNPLLTYLNCARNTLTEID-------VSHNTQLT 151
Query: 335 SLGVDIPGPLGESAIEILESLPTL-CTLNGVT 365
L + + + + L TL C+ N +T
Sbjct: 152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183
Score = 30.8 bits (70), Expect = 2.3
Identities = 23/163 (14%), Positives = 41/163 (25%), Gaps = 45/163 (27%)
Query: 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
L LL ++L+ L G + +VT L L +
Sbjct: 256 LTTLHCIQTDLLEIDLT-HNTQLIYFQAEGCRKIKEL----DVTHNTQLYLLDCQAAG-I 309
Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFT-INFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
+ D L PKL + N+ T ++
Sbjct: 310 TELD-------LSQNPKLVYLYLNNTELTELDVSH------------------------N 338
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNS 319
+ SL N + S ++P+L++
Sbjct: 339 TKLKSLSCVN----AHIQDFSSVGKIPALNNNFEAEGQTITMP 377
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 42.9 bits (101), Expect = 4e-04
Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 32/166 (19%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
+L+ L L N+L+ + I + T++K+L+ L ++ N V + +
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS----YDEKKGD 394
Query: 232 LQGCPKLEI-YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH 290
L S+ + + + LDL + I
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIF--------------------RCLPPRIKVLDLHSNKIK 434
Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
++ + + +L LN+ N L SV + + LQ +
Sbjct: 435 SIPKQVVK---LEALQELNVASNQL--KSVPD--GIFDRLTSLQKI 473
Score = 37.2 bits (86), Expect = 0.026
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 153 DGTVKWLE-LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRA 211
G W + L ++ ++L P ++ L L NK++++ ++V KL+ L+
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIP---KQVVKLEALQE 448
Query: 212 LWLNNNPVLKKCDHCMEDAILQGCPKLE 239
L + +N LK + D I L+
Sbjct: 449 LNVASNQ-LKS----VPDGIFDRLTSLQ 471
Score = 34.1 bits (78), Expect = 0.19
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
K LQ L++ N+L++V + + +L +L+ +WL+ NP
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFD--RLTSLQKIWLHTNP 479
Score = 34.1 bits (78), Expect = 0.20
Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 12/184 (6%)
Query: 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEII-VQEVTKLKNLRALWLNNNPV 219
+ + + L L P L L+L + I + ++ + ++N +
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259
Query: 220 LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG-------EVYDKDNPSSLCLR 272
+ D D L I+ + + + L
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319
Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
+ LD SN + + V + + L L ++ N L+ + ++ E+
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLK--ELSKIAEMTTQMKS 375
Query: 333 LQSL 336
LQ L
Sbjct: 376 LQQL 379
Score = 33.7 bits (77), Expect = 0.25
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L+ L + N+++ ++I V + L L L++N
Sbjct: 42 LSLSKLRILIISHNRIQYLDISV--FKFNQELEYLDLSHN 79
Score = 32.5 bits (74), Expect = 0.62
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 25/160 (15%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE- 239
+L+ L L NKL + NL+ L L+ N D +L+
Sbjct: 69 QELEYLDLSHNKLVKISC-----HPTVNLKHLDLSFNAF----DALPICKEFGNMSQLKF 119
Query: 240 IYNSN-----------FTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC 288
+ S +N + L +K++P L D +S+ + +N+
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ--DFNTESLHIVFPTNKE 177
Query: 289 IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
H +++ + + +L NI+ + L + K
Sbjct: 178 FHFILDVSVK--TVANLELSNIKCVLEDNKCSYFLSILAK 215
Score = 32.5 bits (74), Expect = 0.67
Identities = 18/137 (13%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKL 238
+ LQ L + N + E + + K+L +L +++N + + L
Sbjct: 372 QMKSLQQLDISQNSVSYDEK-KGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVL 426
Query: 239 EIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS 298
+++++ S+ + L+++ L++++ + ++ + F
Sbjct: 427 DLHSNKIK---------------------SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465
Query: 299 PAEMPSLSHLNIRGNPL 315
+ SL + + NP
Sbjct: 466 R--LTSLQKIWLHTNPW 480
Score = 28.7 bits (64), Expect = 9.4
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
L + L +S+ I L F L +L++ N L
Sbjct: 44 LSKLRILIISHNRIQYLDISVFK--FNQELEYLDLSHNKL 81
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 40.5 bits (96), Expect = 6e-04
Identities = 25/182 (13%), Positives = 40/182 (21%), Gaps = 65/182 (35%)
Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN-- 217
L + P+ L +L + V +L L
Sbjct: 6 KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTR---LKAAVGELPEKSKLQEIYQEL 62
Query: 218 ---PVLKKCDHCMEDAI--LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
A+ L KL+ T L +++
Sbjct: 63 TRLK----------AAVGELPEKSKLQEIYQELT------RL-----------KAAVGE- 94
Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAE---MPSLSHLNIRGNPLEQ--NSVREL--LE 325
L + L + + L A +P S L L Q +V EL
Sbjct: 95 ---LPEKSKLQEIYQELTEL------KAAVGELPEKSKLQEIYQELTQLKAAVGELPDQS 145
Query: 326 VL 327
Sbjct: 146 KQ 147
Score = 33.6 bits (78), Expect = 0.12
Identities = 15/161 (9%), Positives = 26/161 (16%), Gaps = 70/161 (43%)
Query: 171 LLSLNLSS-----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
L + P+ L +L ++ V +L L
Sbjct: 52 KSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK---AAVGELPEKSKLQEIYQE- 107
Query: 220 LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
L + L
Sbjct: 108 ------------LTELKA-AVGE---------------------------------LPEK 121
Query: 280 TSLDLSNRCIHNLVNKAFSPAEM---PSLSHLNIRGNPLEQ 317
+ L + + L A + P S L
Sbjct: 122 SKLQEIYQELTQL------KAAVGELPDQSKQQQIYQELTD 156
Score = 31.7 bits (73), Expect = 0.49
Identities = 8/64 (12%), Positives = 13/64 (20%), Gaps = 12/64 (18%)
Query: 160 ELEDADIGDDMLLSL-----NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWL 214
E L L L L +L ++ V +L +
Sbjct: 97 EKSKLQEIYQELTELKAAVGELPE----KSKLQEIYQELTQLK---AAVGELPDQSKQQQ 149
Query: 215 NNNP 218
Sbjct: 150 IYQE 153
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 42.2 bits (99), Expect = 8e-04
Identities = 50/304 (16%), Positives = 89/304 (29%), Gaps = 86/304 (28%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLK--------------NLRALWLNNN--- 217
+L P LQ LS+ N+L ++ + E+ KL L+ L +++N
Sbjct: 135 SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194
Query: 218 --PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
P L KL YN+ T +L P+
Sbjct: 195 SLPTL-----------PSELYKLWAYNNRLT------SL-----------PALPS----- 221
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ---------------NSV 320
+ L +S + +L P L L + GN L N +
Sbjct: 222 --GLKELIVSGNRLTSL------PVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQL 273
Query: 321 RELLEVLKGFPCLQSLGVDIPG-PLGESAIEILESLPTL-CTLNGVTASKILEEGKHVID 378
L E L ++ ++ G PL E ++ L + + + +
Sbjct: 274 TRLPESLIHLSSETTV--NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331
Query: 379 SMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDE 438
L +W + + W E+ D S++ +D L +
Sbjct: 332 RALHLAAADWLVPAREGEPAPADRWH-----MFGQEDNADAFSLF--LDRLSETENFIKD 384
Query: 439 PNFR 442
F+
Sbjct: 385 AGFK 388
Score = 40.6 bits (95), Expect = 0.002
Identities = 29/172 (16%), Positives = 48/172 (27%), Gaps = 19/172 (11%)
Query: 171 LLSLNLSS----KFPD----LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
L L +S P L +LS+ N+L + + + L + + L NP L +
Sbjct: 243 LKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR---LPESLIHLSSETTVNLEGNP-LSE 298
Query: 223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
L+ Y+ F E ++ L
Sbjct: 299 RTLQ----ALREITSAPGYSGPII-RFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353
Query: 283 DLSNRCIHNLVNKAFSPAEMPSLSHL-NIRGNPLEQNSVRELLEVLKGFPCL 333
D + AFS + LS N + + + L L L
Sbjct: 354 DRWHMFGQEDNADAFS-LFLDRLSETENFIKDAGFKAQISSWLAQLAEDEAL 404
Score = 38.7 bits (90), Expect = 0.008
Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 42/143 (29%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
+L + P+L+ L + GN+L ++ L L + A+ G
Sbjct: 75 SLPALPPELRTLEVSGNQLTSLP---VLPPGLLELSIFSNPLTHL---------PALPSG 122
Query: 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
KL I+ + T P + L +S+ + +L
Sbjct: 123 LCKLWIFGNQLT-----------------SLPVL-------PPGLQELSVSDNQLASL-- 156
Query: 295 KAFSPAEMPSLSHLNIRGNPLEQ 317
PA L L N L
Sbjct: 157 ----PALPSELCKLWAYNNQLTS 175
Score = 31.4 bits (71), Expect = 1.5
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 19/87 (21%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
+T+L + + + +L PA P L L + GN L L + G L
Sbjct: 60 PAHITTLVIPDNNLTSL------PALPPELRTLEVSGNQLT-----SLPVLPPGLLELSI 108
Query: 336 LGVDIPGPLGESAIEILESLPTLCTLN 362
+ LC L
Sbjct: 109 FSN--------PLTHLPALPSGLCKLW 127
Score = 28.7 bits (64), Expect = 9.5
Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 70/154 (45%)
Query: 171 LLSLNLSSKFPD----LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHC 226
+ L+S P L+ L + GN+L ++ L+ L ++ N
Sbjct: 208 AYNNRLTS-LPALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNR-------- 252
Query: 227 MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN 286
L P L + SL +
Sbjct: 253 -----LTSLPML-------------------------------------PSGLLSLSVYR 270
Query: 287 RCIHNLVNKAFSPAE---MPSLSHLNIRGNPLEQ 317
+ L P + S + +N+ GNPL +
Sbjct: 271 NQLTRL------PESLIHLSSETTVNLEGNPLSE 298
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 39.6 bits (93), Expect = 0.002
Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 34/142 (23%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
K P L+ ++ NK+ +E + + L +N L+ ++ + +G
Sbjct: 54 KKLPQLRKINFSNNKITDIEEGA--FEGASGVNEILLTSNR-LEN----VQHKMFKGLES 106
Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
L+ N + + L SV L L + I +
Sbjct: 107 LKTLMLRSNRITCVGND---------SFIG------------LSSVRLLSLYDNQITTVA 145
Query: 294 NKAFSPAEMPSLSHLNIRGNPL 315
AF + SLS LN+ NP
Sbjct: 146 PGAFDT--LHSLSTLNLLANPF 165
Score = 33.1 bits (76), Expect = 0.29
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 20/87 (22%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP------------------V 219
++ LSL N++ TV L +L L L NP +
Sbjct: 126 IGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI 183
Query: 220 LKKCDHCMEDAILQGCPKLEIYNSNFT 246
+ C + L+ P ++ +FT
Sbjct: 184 VTGNPRCQKPYFLKEIPIQDVAIQDFT 210
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 39.1 bits (92), Expect = 0.007
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 43/149 (28%)
Query: 173 SLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN------PVLKKCDHC 226
LS +L+ L++ GNK+ + ++ +V++ NL L +++N P L C
Sbjct: 170 GWVLSDGCGELKHLAISGNKI-SGDV---DVSRCVNLEFLDVSSNNFSTGIPFLGDCSA- 224
Query: 227 MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN 286
LQ L+I + + G+ ++ + L++S+
Sbjct: 225 -----LQ---HLDISGNKLS-----------GDF-----SRAI----STCTELKLLNISS 256
Query: 287 RCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
N P + SL +L++ N
Sbjct: 257 ----NQFVGPIPPLPLKSLQYLSLAENKF 281
Score = 35.3 bits (82), Expect = 0.098
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 70/189 (37%)
Query: 170 MLLSLNLSS------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L+LS L++L+L N + E+ + + K++ L+ L L+ N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFN 353
Query: 218 ------PVLKKCDHCMEDAILQGCPKLE---IYNSNFT----INFGEWALG--------- 255
P +++ L + ++NF+ N +
Sbjct: 354 EFSGELP----------ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 256 --FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS---PAE---MPSLSH 307
F G++ P +L + SL LS N S P+ + L
Sbjct: 404 NGFTGKI-----PPTLSN----CSELVSLHLSF-------NY-LSGTIPSSLGSLSKLRD 446
Query: 308 LNIRGNPLE 316
L + N LE
Sbjct: 447 LKLWLNMLE 455
Score = 34.1 bits (79), Expect = 0.21
Identities = 43/173 (24%), Positives = 57/173 (32%), Gaps = 72/173 (41%)
Query: 170 MLLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L+SL+LS L+ L L N LE I QE+ +K L L L+ N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE--GEIPQELMYVKTLETLILDFN 476
Query: 218 PVLKKCDHCMEDAILQG--------CPKLEI---YNSNFTINFGEWALGFCGEVYDKDNP 266
L G C L N+ T GE+ P
Sbjct: 477 D-------------LTGEIPSGLSNCTNLNWISLSNNRLT-----------GEI-----P 507
Query: 267 SSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS---PAE---MPSLSHLNIRGN 313
+ L+++ L LSN N FS PAE SL L++ N
Sbjct: 508 KWIGR----LENLAILKLSN-------NS-FSGNIPAELGDCRSLIWLDLNTN 548
Score = 33.7 bits (78), Expect = 0.27
Identities = 35/176 (19%), Positives = 55/176 (31%), Gaps = 71/176 (40%)
Query: 171 LLSLNLSS-----KFPD---------LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
L SL+LS L+ L++ N L V KL +L L L+
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSA 160
Query: 217 N------PVLKKCDHCMEDAILQGCPKLE---IYNSNFT--INFGEWALGFCGEVYDKDN 265
N V + GC +L+ I + + ++
Sbjct: 161 NSISGANVV--------GWVLSDGCGELKHLAISGNKISGDVDVSR-------------- 198
Query: 266 PSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS---PA--EMPSLSHLNIRGNPLE 316
++ LD+S+ N FS P + +L HL+I GN L
Sbjct: 199 ----------CVNLEFLDVSS-------NN-FSTGIPFLGDCSALQHLDISGNKLS 236
Score = 33.0 bits (76), Expect = 0.47
Identities = 32/175 (18%), Positives = 48/175 (27%), Gaps = 58/175 (33%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN------PVLKKCDH 225
+ LS L L L GN + L +L L++N P
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFY--GAVPPFFGSCSLLESLALSSNNFSGELP------- 335
Query: 226 CMEDAILQGCPKLE---IYNSNFTINFGEWALG---------------FCGEVYDKDNPS 267
L L+ + + F+ E L F G +
Sbjct: 336 ---MDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPI-----LP 386
Query: 268 SLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS---PAE---MPSLSHLNIRGNPLE 316
+LC P ++ L L N N F+ P L L++ N L
Sbjct: 387 NLC--QNPKNTLQELYLQN-------NG-FTGKIPPTLSNCSELVSLHLSFNYLS 431
Score = 33.0 bits (76), Expect = 0.58
Identities = 28/180 (15%), Positives = 52/180 (28%), Gaps = 35/180 (19%)
Query: 154 GTVKWLELEDADI-GDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRAL 212
V ++L + +S +L S L++L L + + V +L +L
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLS-LTGLESLFLSNSHINGS---VSGFKCSASLTSL 105
Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLEI----YNS-NFTINFGEWA---------LGFC- 257
L+ N + L C L+ N+ +F L
Sbjct: 106 DLSRNSLSGPVTTLTS---LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 258 --GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
G L D + L +S N ++ + +L L++ N
Sbjct: 163 ISGAN-----VVGWVLSDG-CGELKHLAISG----NKISGDVDVSRCVNLEFLDVSSNNF 212
Score = 29.5 bits (67), Expect = 5.7
Identities = 35/178 (19%), Positives = 54/178 (30%), Gaps = 47/178 (26%)
Query: 175 NLSSKFPD-------LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN-------PVL 220
L+ + P L L L N I E+ ++L L LN N +
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFS--GNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 221 KKCDHCMEDAILQGCPKLEIYNSNF--TINFGEWALGFCGEVYDK-DNPSSLCLRD---- 273
K + + G + I N + L F G ++ + S+ +
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 274 ----------RPLQSVTSLDLSNRCIHNLVNKAFS---PAE---MPSLSHLNIRGNPL 315
S+ LD+S N S P E MP L LN+ N +
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSY-------NM-LSGYIPKEIGSMPYLFILNLGHNDI 668
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 38.7 bits (90), Expect = 0.007
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 47/151 (31%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
++ +L +L L N L + + NLR L L++N + H +++ +
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLSSNHL-----HTLDEFLFSDLQA 113
Query: 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV-----------TSLDLSN 286
LE+ L L + + V L LS
Sbjct: 114 LEV----------------------------LLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 287 RCIHNLVNKAFSPAE-MPSLSHLNIRGNPLE 316
I + +P L L++ N L+
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
Score = 36.4 bits (84), Expect = 0.037
Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 31/140 (22%)
Query: 181 PDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
P+L+ L L N L T++ + + + L+ L L L NN + ++ + +L+
Sbjct: 88 PNLRYLDLSSNHLHTLD---EFLFSDLQALEVLLLYNNHI-----VVVDRNAFEDMAQLQ 139
Query: 240 I----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295
N P L L + LDLS+ + L
Sbjct: 140 KLYLSQNQISRF------------------PVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181
Query: 296 AFSPAEMPSLSHLNIRGNPL 315
+ L + NPL
Sbjct: 182 DLQKLPAWVKNGLYLHNNPL 201
Score = 34.4 bits (79), Expect = 0.16
Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 19/149 (12%)
Query: 178 SKFPDLQALSLCGNKLETVEI-IVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP 236
LQ L L N++ + ++++ KL L L L++N + + LQ P
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-----KKLPLTDLQKLP 187
Query: 237 KLEIYNSNFTIN-----------FGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLS 285
N F W V D C+ + L ++ SLD
Sbjct: 188 AWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQE-DLYCMHSKKLHNIFSLDFF 246
Query: 286 NRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314
N C + + + +
Sbjct: 247 N-CSEYKESAWEAHLGDTLTIRCDTKQQG 274
Score = 32.5 bits (74), Expect = 0.53
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
P+ ++ LDLS+ +H L FS ++ +L L + N + V + L
Sbjct: 85 VPVPNLRYLDLSSNHLHTLDEFLFS--DLQALEVLLLYNNHIV--VVDR--NAFEDMAQL 138
Query: 334 QSLGVD------IPGPLGESAIEILESLPTLCTLN 362
Q L + P I+ LP L L+
Sbjct: 139 QKLYLSQNQISRFP----VELIKDGNKLPKLMLLD 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 38.2 bits (88), Expect = 0.009
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 32/124 (25%)
Query: 199 IVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP---KLEIYNSNFT-INFGEWAL 254
+ + +NL L++ N L+ +E L+G L I S +
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFVA----PD 74
Query: 255 GFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314
F ++ L+LS + +L K SL L + GNP
Sbjct: 75 AFHF-----------------TPRLSRLNLSFNALESLSWKTVQG---LSLQELVLSGNP 114
Query: 315 LEQN 318
L +
Sbjct: 115 LHCS 118
Score = 35.1 bits (80), Expect = 0.080
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLS-NRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
C D+ L +++T L + + + +L + + L +L I + L
Sbjct: 15 CTRDGALDSLHHL----PGAENLTELYIENQQHLQHLELRDLRG--LGELRNLTIVKSGL 68
Query: 316 E 316
Sbjct: 69 R 69
Score = 30.9 bits (69), Expect = 1.7
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
P L L+L N LE++ + + +L+ L L+ NP+ C
Sbjct: 77 HFTPRLSRLNLSFNALESLS---WKTVQGLSLQELVLSGNPL--HCS 118
Score = 30.5 bits (68), Expect = 2.4
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+L+ L++ + L V L L L+ N
Sbjct: 56 GELRNLTIVKSGLRFVA--PDAFHFTPRLSRLNLSFN 90
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 35.9 bits (83), Expect = 0.012
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
D L L GN L + + + L LR L NP
Sbjct: 30 PVDTTELVLTGNNLTALPPGL--LDALPALRTAHLGANP 66
Score = 30.5 bits (69), Expect = 1.00
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
T L L+ + L +P+L ++ NP
Sbjct: 32 DTTELVLTGNNLTALPPGLLDA--LPALRTAHLGANPW 67
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 36.7 bits (85), Expect = 0.016
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
+ + L+N I + + PSL LN+ N L + LL +
Sbjct: 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIV 129
Query: 335 SLGVD-----IPGPLGESAI-EILESLPTLCTLN 362
D + G E + +E +L +
Sbjct: 130 EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVG 163
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 36.9 bits (86), Expect = 0.018
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 44/154 (28%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDA 230
L L+ L++ N +++ + E + L NL L L++N ++ +
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNK-IQS----IYCT 167
Query: 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV----------T 280
L+ ++ + N SL L P+ +
Sbjct: 168 DLRVLHQMPLLN------------------------LSLDLSLNPMNFIQPGAFKEIRLK 203
Query: 281 SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314
L L + ++ + F + SL + + NP
Sbjct: 204 ELALDTNQLKSVPDGIFDR--LTSLQKIWLHTNP 235
Score = 36.5 bits (85), Expect = 0.025
Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 33/142 (23%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
FP+LQ L L +++T+E L +L L L NP ++ G
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNP-IQSLAL----GAFSGLSS 101
Query: 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP---LQSVTSLDLSNRCIHNL-V 293
L+ ++ + + L + P L+++ L++++ I + +
Sbjct: 102 LQ-------------------KLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 294 NKAFSPAEMPSLSHLNIRGNPL 315
+ FS + +L HL++ N +
Sbjct: 142 PEYFS--NLTNLEHLDLSSNKI 161
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 37.5 bits (87), Expect = 0.020
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 26/155 (16%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
S LQ L L N L+ + KN+ +L + L + D
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVAL---MTKNMSSLETLDVS-LNSLNSHAYDRT 423
Query: 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPS--SLCLRDRPLQSV---------- 279
+ + N + G V+ P L L + + S+
Sbjct: 424 CAWAESILVLNLSSN--------MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQAL 475
Query: 280 TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314
L++++ + ++ + F + SL ++ + NP
Sbjct: 476 QELNVASNQLKSVPDGVFDR--LTSLQYIWLHDNP 508
Score = 37.2 bits (86), Expect = 0.027
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 171 LLSLNLSS---------KFPD-LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
+L LNLSS P ++ L L N++ ++ ++VT L+ L+ L + +N L
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP---KDVTHLQALQELNVASNQ-L 485
Query: 221 KKCDHCMEDAILQGCPKLE 239
K + D + L+
Sbjct: 486 KS----VPDGVFDRLTSLQ 500
Score = 35.6 bits (82), Expect = 0.071
Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 27/188 (14%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP--VLKKCDHCMEDAILQGCPKL 238
DL+ L + N+L+ + + +LR L L+ N VL C KL
Sbjct: 100 QDLEYLDVSHNRLQNISC-----CPMASLRHLDLSFNDFDVLPVC------KEFGNLTKL 148
Query: 239 E-IYNSN----------FTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNR 287
+ S L + K + L+ + + N
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE-TESLQIPNTTVLHLVFHPNS 207
Query: 288 CIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGES 347
VN + + L NI+ N + L L P L ++ + +
Sbjct: 208 LFSVQVNMSVNALG--HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265
Query: 348 AIEILESL 355
++++ +
Sbjct: 266 SVKLFQFF 273
Score = 34.8 bits (80), Expect = 0.14
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
S +L+ L L N++ +++ V ++L L +++N
Sbjct: 73 SFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLDVSHN 110
Score = 34.5 bits (79), Expect = 0.19
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 27/161 (16%)
Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETV---EIIVQEVTKLKNLRALWLN 215
+ L+ + + L ++ L++ + E T LK+L +
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313
Query: 216 NNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
N L ++A+ ++ I +I+ D P +
Sbjct: 314 NQVFLF-----SKEALYSVFAEMNI--KMLSIS---------------DTPFIHMVCPPS 351
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
S T L+ + + V + S + L L ++ N L+
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLK 390
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 36.2 bits (84), Expect = 0.027
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 52/135 (38%)
Query: 183 LQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIY 241
L +L L GNK+ + + + L +L+ L LN N +
Sbjct: 82 LNSLVLYGNKITELP---KSLFEGLFSLQLLLLNANK-------------INCLRV---- 121
Query: 242 NSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301
+ + L ++ L L + + + FSP
Sbjct: 122 -----------------DAFQD------------LHNLNLLSLYDNKLQTIAKGTFSP-- 150
Query: 302 MPSLSHLNIRGNPLE 316
+ ++ +++ NP
Sbjct: 151 LRAIQTMHLAQNPFI 165
Score = 32.3 bits (74), Expect = 0.54
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+L LSL NKL+T+ + L+ ++ + L NP
Sbjct: 128 HNLNLLSLYDNKLQTIAKGT--FSPLRAIQTMHLAQNP 163
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 36.9 bits (85), Expect = 0.029
Identities = 21/164 (12%), Positives = 44/164 (26%), Gaps = 46/164 (28%)
Query: 171 LLSLNLS----SKFPD----LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
L L++ + P+ L+ ++ N+L + +L L + NN L
Sbjct: 122 LKHLDVDNNQLTMLPELPALLEYINADNNQLTMLP------ELPTSLEVLSVRNNQ-LTF 174
Query: 223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
E L+ L++ + P+ ++
Sbjct: 175 LPELPES--LE---ALDVSTNLLE----SL-------------PAVPVRNHHSEETEIFF 212
Query: 283 DLSNRCIHNLVNKAFSPAEM---PSLSHLNIRGNPLEQNSVREL 323
I ++ P + + + NPL L
Sbjct: 213 RCRENRITHI------PENILSLDPTCTIILEDNPLSSRIRESL 250
Score = 34.6 bits (79), Expect = 0.15
Identities = 32/192 (16%), Positives = 54/192 (28%), Gaps = 63/192 (32%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETV-EIIVQEVTKL--------- 206
KW + + +SL L L L ++ + + ++T L
Sbjct: 35 KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALIS 94
Query: 207 -----KNLRALWLNNN-----PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF 256
+L L +N P L L++ N+ T L
Sbjct: 95 LPELPASLEYLDACDNRLSTLPEL-----------PASLKHLDVDNNQLT------ML-- 135
Query: 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
P + ++ N + L P SL L++R N L
Sbjct: 136 ---------PELPA-------LLEYINADNNQLTML------PELPTSLEVLSVRNNQL- 172
Query: 317 QNSVRELLEVLK 328
+ EL E L+
Sbjct: 173 -TFLPELPESLE 183
Score = 33.4 bits (76), Expect = 0.31
Identities = 24/146 (16%), Positives = 39/146 (26%), Gaps = 36/146 (24%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
+ S + + +L G +++E + L LN L D +
Sbjct: 25 TYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRLN-LSSLP----DNL 78
Query: 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN 291
LEI + P S+ LD + +
Sbjct: 79 PPQITVLEITQNALI-----------------SLPELPA-------SLEYLDACDNRLST 114
Query: 292 LVNKAFSPAEMPSLSHLNIRGNPLEQ 317
L P SL HL++ N L
Sbjct: 115 L------PELPASLKHLDVDNNQLTM 134
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 35.8 bits (83), Expect = 0.045
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 50/137 (36%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI 240
P Q L L L T+ + L N+ ++++ + L+ ++
Sbjct: 31 PSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQ-----------------QL 71
Query: 241 YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLS-NRCIHNLVNKAFSP 299
+ +F L VT +++ R + + A
Sbjct: 72 ESHSF----------------------------YNLSKVTHIEIRNTRNLTYIDPDALKE 103
Query: 300 AEMPSLSHLNIRGNPLE 316
+P L L I L+
Sbjct: 104 --LPLLKFLGIFNTGLK 118
Score = 31.9 bits (73), Expect = 0.78
Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 22/149 (14%)
Query: 178 SKFPDLQALSLCGN-KLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235
S P++ + + + L+ +E L + + + N L ++ L+
Sbjct: 52 SNLPNISRIYVSIDVTLQQLE---SHSFYNLSKVTHIEIRNTRNLTY----IDPDALKEL 104
Query: 236 PKLE---IYNSNFTINFGEWALGFCG---EVYDKDNPSSLCLRDRPLQSVTS----LDLS 285
P L+ I+N+ + + + DNP + Q + + L L
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164
Query: 286 NRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314
N ++ AF+ L + + N
Sbjct: 165 NNGFTSVQGYAFNG---TKLDAVYLNKNK 190
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 34.6 bits (79), Expect = 0.077
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 8/38 (21%)
Query: 814 DSSFQPKLLEVTYCPDCTRACKYDTEALVT----GEVV 847
P L V CP+ CK +V G+VV
Sbjct: 11 AGRRGPNLNIVLTCPE----CKVYPPKIVERFSEGDVV 44
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 34.8 bits (80), Expect = 0.096
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 34/140 (24%)
Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
+ L KL ++ + +L + ++ N VL+ +E + PKL
Sbjct: 29 PRNAIELRFVLTKLRVIQ--KGAFSGFGDLEKIEISQNDVLEV----IEADVFSNLPKLH 82
Query: 240 ---IYNSN--FTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
I +N I + L ++ L +SN I +L +
Sbjct: 83 EIRIEKANNLLYI------------------NPEAF---QNLPNLQYLLISNTGIKHLPD 121
Query: 295 KAFSPAEMPSLSHLNIRGNP 314
L+I+ N
Sbjct: 122 VHKIH--SLQKVLLDIQDNI 139
Score = 33.3 bits (76), Expect = 0.30
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 24/173 (13%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
++ P+LQ L + ++ + + + L + +N + H +E
Sbjct: 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINI----HTIERNS 148
Query: 232 LQGCP----KLEIYNSNFT-INFGEWALGFCGEVYDKDNPSSLCLRD---RPLQSVTSLD 283
G L + + I+ + E+ DN + L + LD
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208
Query: 284 LSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+S IH+L + +L L R L L+ L
Sbjct: 209 ISRTRIHSLPSYGLE-----NLKKLRARS--TYNLKK---LPTLEKLVALMEA 251
Score = 29.4 bits (66), Expect = 4.7
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 10/61 (16%)
Query: 265 NPSSLCLRDRPLQSV--------TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
+ ++ + + L + + AFS L + I N +
Sbjct: 10 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSG--FGDLEKIEISQNDVL 67
Query: 317 Q 317
+
Sbjct: 68 E 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.45
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 9/33 (27%)
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN 309
Q++ L S L K ++ P+L+ +
Sbjct: 20 QALKKLQAS------L--KLYADDSAPALA-IK 43
Score = 30.7 bits (68), Expect = 1.0
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 26/56 (46%)
Query: 316 EQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILE 371
E+ ++++L LK + +SA P L + A+ +E
Sbjct: 18 EKQALKKLQASLKLY-----------AD--DSA-------PAL----AIKAT--ME 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 32.5 bits (75), Expect = 0.50
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 51/147 (34%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN--------PVLKKCDHCMEDAILQG 234
+ L L G L I + L L L++ P + K L
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ------LH- 104
Query: 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
L I ++N + G + P L ++++ +LD S N
Sbjct: 105 --YLYITHTNVS-----------GAI-----PDFLSQ----IKTLVTLDFSY-------N 135
Query: 295 KAFS---PAE---MPSLSHLNIRGNPL 315
S P +P+L + GN +
Sbjct: 136 A-LSGTLPPSISSLPNLVGITFDGNRI 161
Score = 29.8 bits (68), Expect = 3.9
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 15/60 (25%)
Query: 171 LLSLNLSS-------------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L + K L L + + I ++++K L L + N
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLVTLDFSYN 135
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 32.3 bits (74), Expect = 0.56
Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 50/132 (37%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYN 242
L LSL N+L+++ V KL +L+ L L NN L+ P+
Sbjct: 135 LTYLSLGYNELQSLPKGV--FDKLTSLKELRLYNNQ-------------LKRVPE----- 174
Query: 243 SNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEM 302
+DK L + +L L N + + AF +
Sbjct: 175 ----------------GAFDK------------LTELKTLKLDNNQLKRVPEGAFDS--L 204
Query: 303 PSLSHLNIRGNP 314
L L ++ NP
Sbjct: 205 EKLKMLQLQENP 216
Score = 31.5 bits (72), Expect = 1.1
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+L L L N+L+++ V L L L L N
Sbjct: 109 VNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYN 143
Score = 29.9 bits (68), Expect = 2.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L+ L + NKL+ + I V +L NL L L+ N
Sbjct: 87 LETLWVTDNKLQALPIGV--FDQLVNLAELRLDRN 119
Score = 29.2 bits (66), Expect = 5.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L+ L L NKL+T+ + +LKNL LW+ +N
Sbjct: 63 LRLLYLNDNKLQTLPAGI--FKELKNLETLWVTDN 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 32.4 bits (74), Expect = 0.60
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
P L L + N+L ++ + + L L+ L+L N
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGN 134
Score = 31.6 bits (72), Expect = 1.1
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWL 214
L L + + SL + L L+L +L +++ L L L L
Sbjct: 32 DTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTLDL 84
Query: 215 NNN 217
++N
Sbjct: 85 SHN 87
Score = 31.6 bits (72), Expect = 1.1
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 160 ELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L ++ L L + P L L L N+L+++ ++ Q L L L ++ N
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFN 110
Score = 30.8 bits (70), Expect = 1.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
P L+ LSL N L + + + L+NL L L N
Sbjct: 148 PKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQEN 182
Score = 30.8 bits (70), Expect = 1.6
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 11/56 (19%)
Query: 171 LLSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L +N + D L L N L T + + L L L+
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLAT--LMPYTRLTQLNLDRA 65
Score = 30.5 bits (69), Expect = 2.4
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
L L + +L L L N L T+ + L +L+ NP
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGNP 206
Score = 30.1 bits (68), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+LQ L L GN+L+T+ + +T L L L NN
Sbjct: 124 GELQELYLKGNELKTLPPGL--LTPTPKLEKLSLANN 158
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 31.2 bits (71), Expect = 1.1
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L + +L+ L L N+L + + V + L L L L N
Sbjct: 55 LEPGVFDSLINLKELYLGSNQLGALPVGVFD--SLTQLTVLDLGTN 98
Score = 28.9 bits (65), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L+ L +C NKL + + + +L +L L L+ N
Sbjct: 114 LKELFMCCNKLTELP---RGIERLTHLTHLALDQN 145
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 30.8 bits (70), Expect = 1.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L + + L L L GNKL+++ V KL +L L L+ N
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--KLTSLTYLNLSTN 86
Score = 28.9 bits (65), Expect = 5.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L+L N+L+++ V + KL L+ L LN N
Sbjct: 78 LTYLNLSTNQLQSLPNGVFD--KLTQLKELALNTN 110
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 31.1 bits (71), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+L+ L L N+L+++ V + KL NL L L +N
Sbjct: 110 NLKELVLVENQLQSLPDGVFD--KLTNLTYLNLAHN 143
Score = 28.8 bits (65), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L L N+L+++ V + KL L+ L L N
Sbjct: 159 LTELDLSYNQLQSLPEGVFD--KLTQLKDLRLYQN 191
Score = 28.8 bits (65), Expect = 7.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+ +L L L GN+L+++ V + KL NL+ L L N
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVEN 119
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus
luminescens subsp}
Length = 511
Score = 31.5 bits (70), Expect = 1.4
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 694 FQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFE-YETHFTV 746
F ++ +L S + L+ FL + L D + F + +HF
Sbjct: 152 FSRIQYTYDLYILKSSAEALKEFLKESVKTALDKADTEEDMNDLFNTWGSHFLS 205
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 30.8 bits (70), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L L GN+L+++ V +L L+ L LN N
Sbjct: 109 LDKLYLGGNQLKSLPSGV--FDRLTKLKELRLNTN 141
Score = 29.7 bits (67), Expect = 3.4
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
LS L L+L N+L+T+ V L L L L NN
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGV--FDDLTELGTLGLANN 93
Score = 28.9 bits (65), Expect = 6.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L L N+L ++ + V L L L+L N
Sbjct: 85 LGTLGLANNQLASLPLGV--FDHLTQLDKLYLGGN 117
Score = 28.9 bits (65), Expect = 6.2
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L+ L L N+L+++ KL NL+ L L+ N
Sbjct: 132 KLKELRLNTNQLQSIPAGA--FDKLTNLQTLSLSTN 165
Score = 28.5 bits (64), Expect = 8.1
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
K +LQ LSL N+L++ + +L L+ + L N
Sbjct: 153 KLTNLQTLSLSTNQLQS--VPHGAFDRLGKLQTITLFGNQ 190
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 30.4 bits (69), Expect = 1.7
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+Q L L NK++ + + L L+ L L +N
Sbjct: 80 IQELQLGENKIKEISNKM--FLGLHQLKTLNLYDN 112
Score = 28.8 bits (65), Expect = 5.7
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
+ P L L L N+L +E E +++ L L N
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFE--GASHIQELQLGEN 88
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 29.1 bits (66), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
D Q L L N++ +E V + L NL+ L+ N+N
Sbjct: 34 DKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSN 67
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 29.8 bits (67), Expect = 4.1
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 320 VRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTL-CTL 361
++ +LE+ GF + +L VD+ G G + I+ P +
Sbjct: 197 MKRMLEIYTGFEGISTL-VDVGGGSGRNLELIISKYPLIKGIN 238
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 29.2 bits (66), Expect = 4.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L L N+L + LK+LR L L+ N
Sbjct: 80 LLTLILSYNRLRCIPPRT--FDGLKSLRLLSLHGN 112
Score = 28.8 bits (65), Expect = 5.5
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
S + L + L N++ T+ + + L L L+ N
Sbjct: 51 SNYKHLTLIDLSNNRISTLSNQS--FSNMTQLLTLILSYN 88
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 28.7 bits (65), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
Q L L N++ +E V + +L L L L+NN
Sbjct: 31 TTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNN 64
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium
tumefaciens STR. C58, structural GENO PSI-2, protein
structure initiative; 2.60A {Agrobacterium tumefaciens
str} SCOP: a.288.1.1
Length = 165
Score = 28.9 bits (64), Expect = 5.0
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 698 KFDLRYIVLVRSMDPLEIFLSDVFWVRLANNP 729
KF +I+ V+ ++ +I F R+ NN
Sbjct: 110 KFGFPFIIAVKGLNRHDIL--SAFDTRIDNNA 139
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 29.2 bits (65), Expect = 7.1
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 5/89 (5%)
Query: 523 TPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITT-----EPKDADIIWTSLQV 577
+ S VY P V++ R + T + KDA + W
Sbjct: 279 EQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGK 338
Query: 578 DEDMKTATGITDQQYVNQFPFESCLVMKH 606
G+ ++ S L +
Sbjct: 339 VPTGGVEEGLLERHSNGSQSQHSRLTLPR 367
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 29.0 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 321 RELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTL 358
+++LE+ GF L ++ VD+ G G A I+ P++
Sbjct: 192 KKILEMYNGFEGLTTI-VDVGGGTGAVASMIVAKYPSI 228
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics; 1.80A {Thermus thermophilus}
Length = 423
Score = 28.8 bits (65), Expect = 8.0
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILE 371
GN +E VRE +E LKG + PG L E A+ + E L L+ A K LE
Sbjct: 247 GNAIE---VREAIEALKG---------EGPGDLLEVALALAEEALRLEGLDPALARKALE 294
Query: 372 EGK 374
G
Sbjct: 295 GGA 297
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 28.7 bits (64), Expect = 8.3
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 21/78 (26%)
Query: 321 RELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSM 380
L E + F L+SL VD+ G G I E P L V D
Sbjct: 182 LVLQENKRVFEGLESL-VDVGGGTGGVTKLIHEIFPHLKCT--------------VFD-- 224
Query: 381 LQPRLPEWSADQPLADRV 398
P+ + + +
Sbjct: 225 ----QPQVVGNLTGNENL 238
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 28.0 bits (63), Expect = 9.1
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L L NKL+++ V + KL L L L+ N
Sbjct: 29 SATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQN 62
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 28.6 bits (64), Expect = 9.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 321 RELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTL-CTL 361
++LLE+ GF L +L VD+ G +G + I PT+
Sbjct: 190 KKLLELYHGFEGLGTL-VDVGGGVGATVAAIAAHYPTIKGVN 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,316,568
Number of extensions: 799679
Number of successful extensions: 3032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 585
Length of query: 871
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 769
Effective length of database: 3,853,851
Effective search space: 2963611419
Effective search space used: 2963611419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)