RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002880
(871 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 47.3 bits (111), Expect = 4e-06
Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 23/168 (13%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
L + + + T+ + +L L L+ N K ++
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGN----KITKVDAASLKGLNNL 197
Query: 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP-----LQSVTSLDLSNRCIHNL 292
++ S +I+ + + + ++ L P + + + L N I +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257
Query: 293 VNKAFSP----AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ F P + S S +++ NP++ ++ F C+
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-----STFRCVYVR 300
Score = 36.9 bits (84), Expect = 0.009
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 12/142 (8%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP---VLKKCDHCMEDAILQG 234
+L L L NK+ I L L L+L+ N + +K +++ +
Sbjct: 52 KNLKNLHTLILINNKISK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109
Query: 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
++ S F + + + ++ ++ + +++ I +
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MKKLSYIRIADTNITTIPQ 167
Query: 295 KAFSPAEMPSLSHLNIRGNPLE 316
PSL+ L++ GN +
Sbjct: 168 GLP-----PSLTELHLDGNKIT 184
Score = 30.4 bits (67), Expect = 0.78
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWL 214
IG + ++K +SL N ++ EI + A+ L
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 45.0 bits (104), Expect = 3e-05
Identities = 18/155 (11%), Positives = 46/155 (29%), Gaps = 6/155 (3%)
Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
P + ++ + F + D
Sbjct: 305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 364
Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVLKGF 330
+P + L L++ + + + + SL L++ N L + +L+E ++
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 331 PC-LQSL---GVDIPGPLGESAIEILESLPTLCTL 361
C L+ L + + + + + P+L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 36.9 bits (83), Expect = 0.010
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRALWLNN 216
L+++ ++ D L Q + L L + I + L L L +
Sbjct: 7 LDIQCEELSDARWAEL--LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64
Query: 217 NPVLKKCDHCMEDAILQGCPKLE 239
N + HC+ + K++
Sbjct: 65 NELGDVGVHCVLQGLQTPSCKIQ 87
Score = 35.7 bits (80), Expect = 0.021
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC- 332
LQ + L + + K S A P+L+ LN+R N L V +L+ L+ C
Sbjct: 26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85
Query: 333 LQSL 336
+Q L
Sbjct: 86 IQKL 89
Score = 29.9 bits (65), Expect = 1.3
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 304 SLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNG 363
+ L+I+ L ELL +L+ ++ + + L P L LN
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN- 61
Query: 364 VTASKILEEGKHVIDSMLQ 382
+ ++++ + G H + LQ
Sbjct: 62 LRSNELGDVGVHCVLQGLQ 80
Score = 29.9 bits (65), Expect = 1.6
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 180 FPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
L+ L L + + + + +LR L L+NN + + +++ Q
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427
Query: 238 LEI 240
LE
Sbjct: 428 LEQ 430
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 41.5 bits (96), Expect = 3e-04
Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 32/193 (16%)
Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
++ + + +L LSL GN+L+ + + L NL L L NN +
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANN----QIS 254
Query: 225 HCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL 284
+ + L +L++ + + L + +N L+++T L L
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314
Query: 285 SNRCI------------------HNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV 326
I +N V+ S A + +++ L+ N + L
Sbjct: 315 YFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD------LTP 368
Query: 327 LKGFPCLQSLGVD 339
L + LG++
Sbjct: 369 LANLTRITQLGLN 381
Score = 34.2 bits (77), Expect = 0.066
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 146 HNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTK 205
N E L + + + ++ S LQ L NK+ V +
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS----SLAN 349
Query: 206 LKNLRALWLNNN 217
L N+ L +N
Sbjct: 350 LTNINWLSAGHN 361
Score = 33.4 bits (75), Expect = 0.098
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
L+ ++ + ++ + ++ LS N++ + + L + L LN+
Sbjct: 331 LQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT----PLANLTRITQLGLNDQ 383
Score = 30.0 bits (66), Expect = 1.4
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
L VT+L I ++ + + +L+ +N N L + LK L
Sbjct: 43 LDQVTTLQADRLGIKSIDGVEY----LNNLTQINFSNNQLTD------ITPLKNLTKLVD 92
Query: 336 L 336
+
Sbjct: 93 I 93
Score = 27.7 bits (60), Expect = 6.4
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 21/117 (17%)
Query: 115 DTDIEEV---DAVKGVLHENGTKSNVEDIL-ESEIHNATEKGDGTVKWLELEDADIGDDM 170
DT I ++ A+ + K+NV D + ++++ T L+ + I
Sbjct: 9 DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTT--------LQADRLGIK--- 57
Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCM 227
S++ +L ++ N+L + + L L + +NNN +
Sbjct: 58 --SIDGVEYLNNLTQINFSNNQLTDITPL----KNLTKLVDILMNNNQIADITPLAN 108
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 38.9 bits (90), Expect = 4e-04
Identities = 23/153 (15%), Positives = 43/153 (28%), Gaps = 31/153 (20%)
Query: 184 QALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNS 243
+ L L L + + +L + L L++N + L LE+ +
Sbjct: 1 RVLHLAHKDLTVLC----HLEQLLLVTHLDLSHNRLRALPPA------LAALRCLEVLQA 50
Query: 244 NFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP 303
+ + + L L N + P
Sbjct: 51 SDNALENVDGVANL-------------------PRLQELLLCNNRLQQSAAIQ-PLVSCP 90
Query: 304 SLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
L LN++GN L Q + + P + S+
Sbjct: 91 RLVLLNLQGNSLCQEE-GIQERLAEMLPSVSSI 122
Score = 33.1 bits (75), Expect = 0.044
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
LE D+ L +++ + P LQ L LC N+L+ I Q + L L L
Sbjct: 41 ALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQG 99
Query: 217 NPVLKKCDHCMEDAILQGCPKLE 239
N + ++ ++ + + P +
Sbjct: 100 NSLCQEEGI--QERLAEMLPSVS 120
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 39.6 bits (91), Expect = 6e-04
Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 30/221 (13%)
Query: 116 TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLN 175
I DA + +N K +V D + T+ ++ + ++DI +
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVTDAV-------TQNELNSIDQIIANNSDIKSVQGIQ-- 65
Query: 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235
P++ L L GNKL ++ + NL+ L K D + +
Sbjct: 66 ---YLPNVTKLFLNGNKLTDIKPL-------ANLKNLGWLFLDENKVKDLSSLKDLKKLK 115
Query: 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295
+N I G L +Y +N + L + +L L + I ++V
Sbjct: 116 SLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP- 173
Query: 296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
A + L +L + N + L L G L L
Sbjct: 174 ---LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVL 205
Score = 30.4 bits (67), Expect = 0.78
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
+ LQ L L N + + + LKNL L L +
Sbjct: 175 AGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFS 209
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 36.2 bits (82), Expect = 0.011
Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 14/181 (7%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRA----- 211
+ L LE + D ++ +L +K +L L+L G + + ++ L
Sbjct: 74 QNLSLEGLRLSDPIVNTL---AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130
Query: 212 ----LWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPS 267
+ + + L G K + T+ L +
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 190
Query: 268 SLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVL 327
L + L LS C + E+P+L L + G + +++ L E L
Sbjct: 191 DCFQEFFQLNYLQHLSLSR-CYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEAL 248
Query: 328 K 328
Sbjct: 249 P 249
Score = 30.5 bits (67), Expect = 0.81
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
+ LQ LSL E + E+ ++ L+ L + D ++ + + P
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI----VPDGTLQ-LLKEALPH 250
Query: 238 LEIYNSNFT 246
L+I S+FT
Sbjct: 251 LQINCSHFT 259
Score = 30.1 bits (66), Expect = 1.1
Identities = 27/218 (12%), Positives = 63/218 (28%), Gaps = 22/218 (10%)
Query: 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLN 215
V + + + + +Q + L + + V + +++ L+ L L
Sbjct: 25 VIAFRCPRSFMDQPLAEHFSPFR----VQHMDLSNSVI-EVSTLHGILSQCSKLQNLSLE 79
Query: 216 NNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
+ + L L N + F E+AL + + +L
Sbjct: 80 GLRLSDPIVNT-----LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134
Query: 276 LQSVTSLDLSNR-----------CIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELL 324
+ + +++ NL S + +++ + +
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-NDCF 193
Query: 325 EVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362
+ LQ L + + + L +PTL TL
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 36.0 bits (81), Expect = 0.018
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 157 KWLELEDADIGDDMLLSL--NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRAL 212
+ L L+ +I D + +L + K PDL L L GN+ + +V E+ ++ + R
Sbjct: 276 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 333
Score = 32.5 bits (72), Expect = 0.18
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEV-TKLKNLRALWLNNNPVLK 221
G ++ + LQ L L N++ + V + + K+ +L L LN N +
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316
Query: 222 KCDHCME 228
+ D E
Sbjct: 317 EDDVVDE 323
Score = 29.5 bits (64), Expect = 1.8
Identities = 28/187 (14%), Positives = 67/187 (35%), Gaps = 14/187 (7%)
Query: 180 FPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
P L+++ N+L +++ + + L + + N + + + L C +
Sbjct: 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 216
Query: 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAF 297
L++ + + + N L L D L + + + +
Sbjct: 217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL------ 270
Query: 298 SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG-FPCLQSLGVDIPGPLGESAIEILESLP 356
E L L ++ N +E ++VR L V+ P L L ++ G ++++ +
Sbjct: 271 ---ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL--ELNGNRFSEEDDVVDEIR 325
Query: 357 TLCTLNG 363
+ + G
Sbjct: 326 EVFSTRG 332
Score = 29.1 bits (63), Expect = 2.3
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 278 SVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
S+ L I K+ E S+ + + GN + + R L E + L+
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 336 L 336
Sbjct: 64 A 64
Score = 27.9 bits (60), Expect = 6.2
Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 184 QALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYN 242
++L L E + + + + +++ + L+ N + + + + + LEI
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAE 65
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 34.4 bits (78), Expect = 0.023
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN------PVLKKCDHCME 228
+ P+L +L+L N+L ++ + V K NL+ L L+ N + K +E
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 229 DAILQGCP 236
+ L G
Sbjct: 119 ELWLDGNS 126
Score = 31.7 bits (71), Expect = 0.17
Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 33/181 (18%)
Query: 191 NKL--ETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTIN 248
N+L E VE + ++K + L+ D L + N ++
Sbjct: 2 NELKPEQVEQLKLIMSKRYDGSQQALDLK-------GLRSDPDLVAQNIDVVLNRRSSMA 54
Query: 249 FGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHL 308
++L + + + + SL+LSN ++ L + + + P+L L
Sbjct: 55 ------------------ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96
Query: 309 NIRGNPLEQNSVREL-LEVLKGFPCLQSLGVDIPGPLGESA---IEILESLPTLCTLNGV 364
N+ GN L+ S REL L G + + + I E P L L+G
Sbjct: 97 NLSGNELK--SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGH 154
Query: 365 T 365
Sbjct: 155 E 155
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 33.5 bits (75), Expect = 0.062
Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 24/173 (13%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL---------KKCDHCME 228
+ + L +++++ + L NL + +NN + K D M
Sbjct: 37 TDLDQVTTLQADRLGIKSIDGV----EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 92
Query: 229 DAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC 288
+ + L + + + + + N + L L + +++L
Sbjct: 93 NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 152
Query: 289 IHNLVNKAF-----SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+ A + +L L+I N + + VL L+SL
Sbjct: 153 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD------ISVLAKLTNLESL 199
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 33.3 bits (74), Expect = 0.12
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 251 EWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI 310
EW ++ + LRD + L+L+N + +L P P L L
Sbjct: 12 EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL------PELPPHLESLVA 65
Query: 311 RGNPLEQ 317
N L +
Sbjct: 66 SCNSLTE 72
Score = 31.7 bits (70), Expect = 0.35
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
+ L S + + P +L L++ NPL +
Sbjct: 303 PPRLERLIASFNHLAEV------PELPQNLKQLHVEYNPLRE 338
Score = 31.3 bits (69), Expect = 0.50
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
L P+ + F + Y + + + S+ L
Sbjct: 230 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 289
Query: 283 DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
++SN + L PA P L L N L V EL + LK
Sbjct: 290 NVSNNKLIEL------PALPPRLERLIASFNHLA--EVPELPQNLK 327
Score = 30.6 bits (67), Expect = 0.84
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
LE+ ++ ++ L+ L + P L+ L N L V +NL+ L + NP
Sbjct: 286 LEELNVSNNKLIEL--PALPPRLERLIASFNHLAEVP------ELPQNLKQLHVEYNP 335
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 32.7 bits (73), Expect = 0.16
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
+L D+ + ++ + P+L + L N++ V + NL + L N
Sbjct: 171 NLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS----PLANTSNLFIVTLTN 226
Score = 30.8 bits (68), Expect = 0.62
Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 53/215 (24%)
Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
+ +++ D + + +L + LS G + T+E + L NL L L +N
Sbjct: 24 IAAGKSNVTDTVTQA-DLDG----ITTLSAFGTGVTTIEGV----QYLNNLIGLELKDNQ 74
Query: 219 VLKK-------------------------------------CDHCMEDAILQGCPKLEIY 241
+ + L G L++
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 242 NSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301
+ L + ++ PL +++ L N ++ A
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD-DNKISDISPLAS 193
Query: 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
+P+L ++++ N + + L L +
Sbjct: 194 LPNLIEVHLKNNQISD------VSPLANTSNLFIV 222
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 32.0 bits (72), Expect = 0.18
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 10/135 (7%)
Query: 363 GVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSV 422
G+ + + + R+ D + + L T E V
Sbjct: 36 GLFSKVAVGPNTVMSFYNG-VRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNH---V 91
Query: 423 WYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG 482
LG HS PN F+ G + ++ V +E T + Y
Sbjct: 92 SKYCASLGHKANHSFTPNCIYDMFVHPRFGP------IKCIRTLRAVEADEELTVAYGYD 145
Query: 483 IGEDKQRSARLTAWF 497
+ W+
Sbjct: 146 HSPPGKSGPEAPEWY 160
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 32.4 bits (72), Expect = 0.22
Identities = 26/201 (12%), Positives = 44/201 (21%), Gaps = 61/201 (30%)
Query: 171 LLSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV-- 219
L +N + D L L N L T + + L L L+ +
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRAELTK 69
Query: 220 ------------------------------------------LKKCDHCMEDAILQGCPK 237
L + +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD---RPLQSVTSLDLSNRCIHNLVN 294
N T+ G E N + L L+++ +L L ++ +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 295 KAFSPAEMPSLSHLNIRGNPL 315
F L + GNP
Sbjct: 190 GFFG---SHLLPFAFLHGNPW 207
Score = 31.6 bits (70), Expect = 0.35
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
+ +L L L N L T I + L +L+ NP L C+
Sbjct: 169 NGLENLDTLLLQENSLYT---IPKGFFGSHLLPFAFLHGNPWLCNCE 212
Score = 27.4 bits (59), Expect = 7.8
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
+ T L LS ++ P L+ LN+ L + V L VL
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 31.6 bits (70), Expect = 0.38
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
++ L +L++ N L + + L+ NN L
Sbjct: 265 TQLKFLHSLNVSFNNLCGE---IPQGGNLQRFDVSAYANNKCL 304
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 30.8 bits (68), Expect = 0.44
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 19/165 (11%)
Query: 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIY 241
+ + + L G + +E + ++ LK + L L+ N ++K L G L I
Sbjct: 24 EAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNN-IEKISS------LSGMENLRIL 75
Query: 242 NSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ----SVTSLDLSNRCIHNLVNKAF 297
+ + L + ++ S + ++ L +SN I N
Sbjct: 76 SLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEI-D 134
Query: 298 SPAEMPSLSHLNIRGNPLEQNSVREL------LEVLKGFPCLQSL 336
A + L L + GNPL + +EV+K P L+ L
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 30.3 bits (67), Expect = 0.62
Identities = 16/155 (10%), Positives = 41/155 (26%), Gaps = 25/155 (16%)
Query: 170 MLLSLNL---SSKF---PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223
+ L+ L ++++ + L L G K+ +E L A+ ++N + K
Sbjct: 1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIE---NLGATLDQFDAIDFSDNEIRKLD 57
Query: 224 DHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLD 283
+L+ N + +
Sbjct: 58 GF-------PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 110
Query: 284 LSNRCIHNLVNKAFSPAE---------MPSLSHLN 309
L + ++ + + +P + L+
Sbjct: 111 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145
>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene
alkA or aidA) {Escherichia coli [TaxId: 562]}
Length = 99
Score = 28.9 bits (65), Expect = 0.77
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 11/80 (13%)
Query: 52 IEVCEDGRQRRLVLDSQSMPKESNVFLVDHA---WTFRLSDAFSQLQEVPGLAQRMASLM 108
+E D R + ++ + V T ++ + +M+ L
Sbjct: 27 VETVADSYYARSL----AVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLF 82
Query: 109 CVDTDLDTDIEEVDAVKGVL 128
DL + + V+ G L
Sbjct: 83 ----DLQCNPQIVNGALGRL 98
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.1 bits (63), Expect = 1.8
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 158 WLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
EL +D + L ++ L + ++ + + + LK LRA N
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LPSYGLENLKKLRARSTYNL 235
Query: 218 PVL 220
L
Sbjct: 236 KKL 238
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish
(Brachydanio rerio) [TaxId: 7955]}
Length = 165
Score = 28.3 bits (63), Expect = 2.8
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 697 RKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNP 729
+F +++ R + +I RL N
Sbjct: 112 ERFGFPFVICARLNNKADIV--RQLSERLKNRR 142
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 167
Score = 28.0 bits (61), Expect = 3.6
Identities = 17/157 (10%), Positives = 40/157 (25%), Gaps = 14/157 (8%)
Query: 197 EIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF 256
I + +L+ + +NN + K +E ++ T A G
Sbjct: 5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 64
Query: 257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI---RGN 313
+ + L + L L + S+ R +
Sbjct: 65 IELIETSPSLRVLNVESNFLTPELLARLLRSTLVT-----------QSIVEFKADNQRQS 113
Query: 314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIE 350
L +++ ++ L +G+ +
Sbjct: 114 VLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVS 150
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 165
Score = 27.6 bits (61), Expect = 3.9
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 697 RKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNP 729
KF +I+ V+ ++ +I F R+ NN
Sbjct: 109 EKFGFPFIIAVKGLNRHDIL--SAFDTRIDNNA 139
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 28.6 bits (64), Expect = 4.5
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 721 FWVRLANNPYSLDKHSFFEYETHFTVMNYGRRFNHMNTPD----------FVRGFEAEHQ 770
V + D E H +NYG H + +GF ++
Sbjct: 386 ILVDIYGRKMQADFEGVLERRIHD-FINYGEGLWHTGQRNINWLRVSKDAVAKGFRFKNY 444
Query: 771 VKWLEIHQRVKNTIRSVFEAAAV 793
+ L ++K ++ + V
Sbjct: 445 GEIL--VAKMKEEFPAIVDRVQV 465
>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter
globiformis [TaxId: 1665]}
Length = 156
Score = 27.4 bits (61), Expect = 5.3
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 225 HCMEDAILQGCPKL-EIYNS-----NFTINFGEWALGFCGEVY-DKDNPSSLC 270
+ M A+++ P++ EI S +F ++ + EV+ D P L
Sbjct: 86 YEMGRAVIETHPEIDEIKMSLPNKHHFLVDLQPFGQDNPNEVFYAADRPYGLI 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,260,322
Number of extensions: 153252
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 66
Length of query: 871
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 778
Effective length of database: 1,130,706
Effective search space: 879689268
Effective search space used: 879689268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)