Query 002881
Match_columns 871
No_of_seqs 1003 out of 5049
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 12:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 2E-146 3E-151 1099.4 74.2 793 3-796 1-794 (794)
2 KOG0292 Vesicle coat complex C 100.0 8E-84 1.7E-88 670.8 65.7 731 8-780 2-781 (1202)
3 PF04053 Coatomer_WDAD: Coatom 100.0 3.9E-68 8.5E-73 558.9 41.4 433 320-764 2-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 1.9E-48 4.1E-53 370.4 29.2 329 8-379 108-478 (480)
5 KOG1538 Uncharacterized conser 100.0 3.5E-45 7.7E-50 370.7 39.6 665 17-801 14-715 (1081)
6 KOG1524 WD40 repeat-containing 100.0 5E-44 1.1E-48 354.2 45.4 686 1-809 1-733 (737)
7 KOG0318 WD40 repeat stress pro 100.0 1.7E-41 3.8E-46 336.3 52.2 458 8-490 52-599 (603)
8 KOG0271 Notchless-like WD40 re 100.0 2.5E-43 5.4E-48 335.6 28.7 323 50-415 108-478 (480)
9 KOG0291 WD40-repeat-containing 100.0 1.9E-39 4.2E-44 334.9 55.5 458 14-489 95-706 (893)
10 KOG0272 U4/U6 small nuclear ri 100.0 2E-43 4.4E-48 341.2 23.6 283 13-299 173-458 (459)
11 KOG0286 G-protein beta subunit 100.0 1.5E-41 3.4E-46 312.7 33.0 291 4-298 44-342 (343)
12 KOG0318 WD40 repeat stress pro 100.0 1.7E-37 3.6E-42 308.1 51.5 452 17-490 20-557 (603)
13 KOG0306 WD40-repeat-containing 100.0 1E-38 2.2E-43 329.4 44.2 433 16-490 66-661 (888)
14 KOG0279 G protein beta subunit 100.0 1.1E-38 2.3E-43 292.4 31.6 294 1-298 1-310 (315)
15 KOG2041 WD40 repeat protein [G 100.0 6.6E-38 1.4E-42 320.5 37.4 710 14-825 13-832 (1189)
16 KOG0276 Vesicle coat complex C 100.0 4.9E-36 1.1E-40 303.2 49.7 623 51-753 7-709 (794)
17 KOG0319 WD40-repeat-containing 100.0 7.9E-36 1.7E-40 308.3 50.5 431 13-490 60-532 (775)
18 KOG0292 Vesicle coat complex C 100.0 6.3E-36 1.4E-40 313.5 50.0 665 6-751 42-781 (1202)
19 KOG0291 WD40-repeat-containing 100.0 1.6E-36 3.6E-41 313.3 43.1 344 13-383 263-613 (893)
20 KOG0319 WD40-repeat-containing 100.0 2.2E-36 4.8E-41 312.3 42.6 478 6-491 95-617 (775)
21 KOG0272 U4/U6 small nuclear ri 100.0 8.5E-39 1.8E-43 309.3 23.2 282 55-380 173-458 (459)
22 KOG0273 Beta-transducin family 100.0 3.3E-37 7.2E-42 302.1 33.7 322 13-381 176-522 (524)
23 KOG0286 G-protein beta subunit 100.0 1.9E-36 4.2E-41 279.2 33.3 286 50-379 48-342 (343)
24 KOG0273 Beta-transducin family 100.0 6.8E-37 1.5E-41 299.9 31.3 277 16-297 236-519 (524)
25 KOG0295 WD40 repeat-containing 100.0 3.7E-37 8.1E-42 292.3 25.4 294 4-299 97-404 (406)
26 KOG1538 Uncharacterized conser 100.0 1.3E-35 2.8E-40 301.5 35.5 686 5-778 43-814 (1081)
27 KOG0284 Polyadenylation factor 100.0 4.2E-38 9E-43 302.9 16.6 281 16-301 97-380 (464)
28 KOG0315 G-protein beta subunit 100.0 6.7E-35 1.5E-39 262.6 30.2 268 28-301 11-288 (311)
29 KOG0279 G protein beta subunit 100.0 1.6E-34 3.5E-39 265.0 32.7 298 49-382 7-313 (315)
30 KOG0285 Pleiotropic regulator 100.0 1.6E-35 3.4E-40 280.0 26.4 291 4-300 140-438 (460)
31 KOG0265 U5 snRNP-specific prot 100.0 2E-34 4.4E-39 267.0 29.2 285 8-297 40-334 (338)
32 cd00200 WD40 WD40 domain, foun 100.0 2.5E-33 5.4E-38 292.7 39.7 287 8-298 2-288 (289)
33 KOG0263 Transcription initiati 100.0 9.2E-35 2E-39 304.3 27.5 243 14-260 377-650 (707)
34 KOG0645 WD40 repeat protein [G 100.0 1E-33 2.2E-38 258.6 30.5 286 5-299 4-309 (312)
35 KOG0296 Angio-associated migra 100.0 3.4E-33 7.3E-38 265.8 32.3 328 8-381 57-397 (399)
36 KOG0284 Polyadenylation factor 100.0 2E-35 4.4E-40 284.4 15.9 280 57-380 96-378 (464)
37 KOG0315 G-protein beta subunit 100.0 4.6E-33 1E-37 250.8 28.5 266 9-279 34-308 (311)
38 KOG0306 WD40-repeat-containing 100.0 7E-32 1.5E-36 279.1 40.7 395 7-454 99-664 (888)
39 KOG0316 Conserved WD40 repeat- 100.0 7.5E-33 1.6E-37 247.3 26.4 290 1-297 1-296 (307)
40 KOG0266 WD40 repeat-containing 100.0 9.3E-33 2E-37 300.9 33.1 287 9-299 152-452 (456)
41 KOG0293 WD40 repeat-containing 100.0 1.8E-33 3.9E-38 271.0 24.0 291 5-300 214-512 (519)
42 KOG0263 Transcription initiati 100.0 2.5E-33 5.5E-38 293.5 25.6 244 52-299 373-647 (707)
43 KOG0296 Angio-associated migra 100.0 2.1E-32 4.5E-37 260.4 28.7 289 7-298 98-395 (399)
44 KOG2106 Uncharacterized conser 100.0 5.1E-30 1.1E-34 253.5 40.7 433 7-490 96-623 (626)
45 PLN00181 protein SPA1-RELATED; 100.0 1.1E-30 2.4E-35 307.5 43.1 282 11-298 479-790 (793)
46 KOG0645 WD40 repeat protein [G 100.0 9.9E-31 2.1E-35 239.1 32.6 292 48-381 5-310 (312)
47 KOG0275 Conserved WD40 repeat- 100.0 3.5E-33 7.6E-38 260.4 16.9 283 13-299 211-507 (508)
48 KOG0278 Serine/threonine kinas 100.0 5.1E-33 1.1E-37 250.4 17.0 288 7-301 6-297 (334)
49 KOG0282 mRNA splicing factor [ 100.0 4E-33 8.7E-38 274.9 17.5 288 6-298 205-502 (503)
50 KOG0285 Pleiotropic regulator 100.0 8.7E-32 1.9E-36 254.8 25.4 248 48-301 142-389 (460)
51 KOG2048 WD40 repeat protein [G 100.0 7.5E-29 1.6E-33 254.7 47.8 463 14-488 24-543 (691)
52 KOG0265 U5 snRNP-specific prot 100.0 4.6E-31 9.9E-36 244.8 28.2 284 50-377 40-333 (338)
53 KOG0281 Beta-TrCP (transducin 100.0 2.8E-33 6.1E-38 263.5 13.4 272 14-302 196-478 (499)
54 KOG0295 WD40 repeat-containing 100.0 5.4E-32 1.2E-36 257.3 21.9 251 5-258 140-405 (406)
55 KOG0313 Microtubule binding pr 100.0 1.4E-30 3.1E-35 249.0 27.4 276 14-298 104-415 (423)
56 KOG0310 Conserved WD40 repeat- 100.0 2E-30 4.3E-35 256.6 26.4 277 15-297 26-305 (487)
57 KOG1407 WD40 repeat protein [F 100.0 6.7E-30 1.4E-34 232.3 27.0 279 8-293 13-294 (313)
58 cd00200 WD40 WD40 domain, foun 100.0 4.6E-29 9.9E-34 260.4 36.1 245 51-299 3-247 (289)
59 KOG2041 WD40 repeat protein [G 100.0 1.5E-28 3.3E-33 252.2 36.8 720 3-781 59-923 (1189)
60 KOG1446 Histone H3 (Lys4) meth 100.0 3.5E-28 7.6E-33 228.5 34.8 290 4-301 3-303 (311)
61 KOG0316 Conserved WD40 repeat- 100.0 2.4E-29 5.2E-34 224.9 25.1 245 49-301 9-257 (307)
62 KOG1539 WD repeat protein [Gen 100.0 4.5E-27 9.8E-32 246.8 45.9 464 12-496 73-651 (910)
63 KOG0643 Translation initiation 100.0 1.7E-29 3.6E-34 230.4 23.1 284 10-298 5-314 (327)
64 KOG0266 WD40 repeat-containing 100.0 4.3E-29 9.2E-34 272.2 30.4 250 7-259 195-454 (456)
65 KOG1408 WD40 repeat protein [F 100.0 2.9E-28 6.3E-33 250.3 34.3 436 11-492 74-712 (1080)
66 PLN00181 protein SPA1-RELATED; 100.0 4.9E-28 1.1E-32 285.1 41.6 259 36-300 457-737 (793)
67 KOG0288 WD40 repeat protein Ti 100.0 2.6E-30 5.7E-35 249.8 17.9 285 6-298 166-458 (459)
68 KOG1063 RNA polymerase II elon 100.0 1.9E-27 4.1E-32 244.6 39.7 478 4-490 43-696 (764)
69 KOG0277 Peroxisomal targeting 100.0 3.3E-29 7.2E-34 226.8 22.7 279 19-299 12-307 (311)
70 KOG0305 Anaphase promoting com 100.0 1.9E-28 4.1E-33 253.5 29.0 273 20-299 182-459 (484)
71 KOG3617 WD40 and TPR repeat-co 100.0 8.7E-28 1.9E-32 250.9 32.9 777 1-827 1-943 (1416)
72 KOG0268 Sof1-like rRNA process 100.0 1.2E-29 2.7E-34 241.0 16.4 283 8-300 59-344 (433)
73 KOG0643 Translation initiation 100.0 2.2E-27 4.7E-32 216.6 29.1 238 52-295 5-255 (327)
74 KOG0293 WD40 repeat-containing 100.0 5.3E-29 1.1E-33 240.3 19.1 253 4-260 258-514 (519)
75 KOG0299 U3 snoRNP-associated p 100.0 3.6E-28 7.8E-33 238.6 25.3 276 8-290 135-444 (479)
76 KOG0772 Uncharacterized conser 100.0 2.8E-28 6E-33 241.9 24.3 287 9-298 161-484 (641)
77 KOG0973 Histone transcription 100.0 6.7E-28 1.5E-32 261.9 28.3 283 12-298 10-352 (942)
78 KOG0282 mRNA splicing factor [ 100.0 5.6E-29 1.2E-33 245.8 16.0 248 6-257 249-503 (503)
79 KOG2048 WD40 repeat protein [G 100.0 1.4E-24 2.9E-29 223.6 48.1 415 55-489 23-501 (691)
80 KOG0647 mRNA export protein (c 100.0 3.2E-27 6.8E-32 219.6 25.4 270 13-290 25-312 (347)
81 KOG1407 WD40 repeat protein [F 100.0 4.5E-27 9.7E-32 214.0 25.6 276 51-373 14-292 (313)
82 KOG1539 WD repeat protein [Gen 100.0 1.4E-25 3E-30 235.8 40.3 388 18-453 162-647 (910)
83 KOG1036 Mitotic spindle checkp 100.0 9.2E-27 2E-31 217.7 27.5 268 14-291 12-294 (323)
84 KOG2106 Uncharacterized conser 100.0 7.7E-24 1.7E-28 210.1 49.3 414 20-490 70-518 (626)
85 KOG0294 WD40 repeat-containing 100.0 5.8E-27 1.3E-31 219.1 25.6 245 7-261 35-283 (362)
86 PTZ00421 coronin; Provisional 100.0 3.6E-26 7.9E-31 247.3 35.8 264 15-282 20-314 (493)
87 KOG0281 Beta-TrCP (transducin 100.0 8.8E-29 1.9E-33 233.4 13.4 227 57-299 197-426 (499)
88 KOG0289 mRNA splicing factor [ 100.0 6.6E-27 1.4E-31 227.6 26.3 280 16-298 220-503 (506)
89 KOG0301 Phospholipase A2-activ 100.0 3.7E-27 8.1E-32 242.6 25.8 282 4-301 3-288 (745)
90 KOG0277 Peroxisomal targeting 100.0 9.5E-28 2.1E-32 217.4 18.8 242 15-258 60-308 (311)
91 KOG0305 Anaphase promoting com 100.0 3E-27 6.6E-32 244.6 23.7 244 14-261 216-463 (484)
92 KOG0640 mRNA cleavage stimulat 100.0 3.9E-27 8.5E-32 219.1 21.8 286 10-299 107-424 (430)
93 KOG0308 Conserved WD40 repeat- 100.0 2.5E-27 5.4E-32 241.9 20.6 276 20-298 29-324 (735)
94 KOG0274 Cdc4 and related F-box 100.0 3.1E-26 6.8E-31 247.5 30.0 270 14-298 207-479 (537)
95 KOG0278 Serine/threonine kinas 100.0 6.1E-28 1.3E-32 217.8 13.9 248 8-263 52-301 (334)
96 KOG0283 WD40 repeat-containing 100.0 4.4E-27 9.4E-32 249.3 22.7 285 9-303 260-578 (712)
97 KOG0641 WD40 repeat protein [G 100.0 4.9E-25 1.1E-29 195.9 31.6 280 14-299 31-347 (350)
98 KOG0300 WD40 repeat-containing 100.0 9.4E-27 2E-31 217.0 20.9 289 4-298 137-473 (481)
99 KOG1408 WD40 repeat protein [F 100.0 1.4E-24 3.1E-29 223.4 38.7 537 19-592 41-716 (1080)
100 KOG1446 Histone H3 (Lys4) meth 100.0 9.5E-25 2.1E-29 205.6 33.7 247 48-300 5-261 (311)
101 KOG0310 Conserved WD40 repeat- 99.9 2.8E-26 6.1E-31 227.3 24.2 238 57-298 26-265 (487)
102 PTZ00420 coronin; Provisional 99.9 8E-25 1.7E-29 237.3 37.1 245 33-283 50-318 (568)
103 PTZ00421 coronin; Provisional 99.9 2.8E-25 6E-30 240.5 32.6 227 10-240 70-314 (493)
104 KOG0313 Microtubule binding pr 99.9 3.8E-26 8.1E-31 218.9 22.7 248 5-258 134-417 (423)
105 KOG0274 Cdc4 and related F-box 99.9 1.6E-25 3.4E-30 242.1 27.7 247 8-267 242-490 (537)
106 KOG0275 Conserved WD40 repeat- 99.9 6E-27 1.3E-31 218.9 14.3 245 9-257 257-507 (508)
107 KOG0308 Conserved WD40 repeat- 99.9 2.7E-26 5.9E-31 234.4 20.3 229 67-297 35-281 (735)
108 KOG0264 Nucleosome remodeling 99.9 5.7E-26 1.2E-30 223.7 21.5 246 13-259 122-404 (422)
109 KOG0973 Histone transcription 99.9 2.4E-25 5.2E-30 242.2 28.4 283 57-382 13-355 (942)
110 KOG0268 Sof1-like rRNA process 99.9 1.2E-26 2.7E-31 220.7 14.9 286 50-384 59-347 (433)
111 KOG1063 RNA polymerase II elon 99.9 3.5E-24 7.5E-29 220.8 31.4 375 4-417 180-698 (764)
112 KOG0647 mRNA export protein (c 99.9 2E-24 4.3E-29 201.1 26.1 270 55-372 25-312 (347)
113 KOG0299 U3 snoRNP-associated p 99.9 1E-24 2.2E-29 214.5 25.6 244 50-299 135-408 (479)
114 KOG0289 mRNA splicing factor [ 99.9 1.3E-24 2.8E-29 211.7 25.8 235 59-297 221-458 (506)
115 KOG0288 WD40 repeat protein Ti 99.9 5.6E-26 1.2E-30 220.0 16.1 244 49-300 167-416 (459)
116 KOG0640 mRNA cleavage stimulat 99.9 6.6E-25 1.4E-29 204.4 21.6 216 51-270 106-346 (430)
117 PTZ00420 coronin; Provisional 99.9 1.9E-23 4.1E-28 226.6 36.7 223 75-300 50-292 (568)
118 KOG1332 Vesicle coat complex C 99.9 3.2E-25 7E-30 199.9 17.7 252 8-259 4-286 (299)
119 KOG2055 WD40 repeat protein [G 99.9 2.9E-24 6.2E-29 211.2 25.3 278 15-298 213-509 (514)
120 KOG0641 WD40 repeat protein [G 99.9 2.6E-23 5.7E-28 184.9 27.7 246 9-259 83-349 (350)
121 KOG1274 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 223.1 29.7 276 13-298 11-297 (933)
122 KOG0772 Uncharacterized conser 99.9 5.7E-24 1.2E-28 211.5 24.3 239 50-291 160-429 (641)
123 KOG0639 Transducin-like enhanc 99.9 2E-24 4.3E-29 213.7 20.7 283 7-298 412-701 (705)
124 KOG1332 Vesicle coat complex C 99.9 1.7E-24 3.7E-29 195.3 18.1 246 54-299 8-284 (299)
125 KOG2096 WD40 repeat protein [G 99.9 3E-23 6.5E-28 194.2 26.7 284 8-297 79-399 (420)
126 KOG0264 Nucleosome remodeling 99.9 7.1E-24 1.5E-28 209.0 22.2 244 55-299 122-402 (422)
127 KOG4283 Transcription-coupled 99.9 2.4E-23 5.1E-28 192.8 24.1 283 12-300 40-364 (397)
128 KOG0650 WD40 repeat nucleolar 99.9 9.6E-24 2.1E-28 213.6 23.0 288 5-298 390-732 (733)
129 KOG0300 WD40 repeat-containing 99.9 8.8E-24 1.9E-28 197.3 21.0 246 48-298 139-425 (481)
130 KOG2096 WD40 repeat protein [G 99.9 4.9E-23 1.1E-27 192.8 25.8 288 94-415 81-399 (420)
131 KOG0294 WD40 repeat-containing 99.9 2.3E-22 5E-27 188.5 28.0 262 30-301 4-281 (362)
132 KOG0646 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 207.2 20.7 253 29-284 52-332 (476)
133 KOG4328 WD40 protein [Function 99.9 3.5E-23 7.6E-28 203.4 23.2 289 8-299 179-493 (498)
134 KOG0283 WD40 repeat-containing 99.9 2.6E-23 5.5E-28 220.9 24.0 251 92-385 259-579 (712)
135 KOG1036 Mitotic spindle checkp 99.9 2E-22 4.2E-27 188.9 26.8 269 56-374 12-295 (323)
136 KOG0301 Phospholipase A2-activ 99.9 9.6E-23 2.1E-27 210.4 27.2 282 48-384 5-290 (745)
137 KOG1273 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 189.4 24.1 277 18-301 26-322 (405)
138 KOG1445 Tumor-specific antigen 99.9 3.1E-22 6.8E-27 203.5 26.8 132 10-141 74-212 (1012)
139 KOG0267 Microtubule severing p 99.9 1.9E-24 4.2E-29 223.6 10.0 259 27-295 4-262 (825)
140 KOG0646 WD40 repeat protein [G 99.9 3.1E-22 6.7E-27 197.7 24.5 259 36-298 17-304 (476)
141 KOG0269 WD40 repeat-containing 99.9 1.8E-23 3.9E-28 218.3 14.6 244 17-262 89-343 (839)
142 KOG0269 WD40 repeat-containing 99.9 6.6E-23 1.4E-27 214.1 18.7 278 16-298 40-337 (839)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-20 5.8E-25 195.8 37.3 266 28-302 2-280 (300)
144 KOG0267 Microtubule severing p 99.9 8.7E-24 1.9E-28 218.8 9.7 238 9-250 22-259 (825)
145 KOG2055 WD40 repeat protein [G 99.9 1.9E-21 4.2E-26 191.5 24.4 285 57-381 213-511 (514)
146 KOG1524 WD40 repeat-containing 99.9 2.2E-19 4.9E-24 179.7 38.6 226 56-291 13-246 (737)
147 KOG0270 WD40 repeat-containing 99.9 5.4E-22 1.2E-26 194.6 18.8 244 18-263 176-453 (463)
148 KOG1274 WD40 repeat protein [G 99.9 9.6E-21 2.1E-25 202.1 28.5 241 55-301 11-262 (933)
149 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-20 9.6E-25 194.1 33.8 264 9-281 25-300 (300)
150 KOG2445 Nuclear pore complex c 99.9 1.4E-20 3E-25 176.1 25.9 253 6-259 4-318 (361)
151 KOG2445 Nuclear pore complex c 99.9 2.7E-20 5.9E-25 174.1 27.6 246 54-300 10-317 (361)
152 KOG0270 WD40 repeat-containing 99.9 2.7E-21 5.8E-26 189.8 21.9 277 20-299 130-447 (463)
153 KOG0302 Ribosome Assembly prot 99.9 2.8E-21 6.1E-26 185.4 21.2 245 9-256 145-435 (440)
154 KOG1273 WD40 repeat protein [G 99.9 7.8E-21 1.7E-25 178.0 23.5 233 60-298 26-277 (405)
155 KOG0307 Vesicle coat complex C 99.9 1.5E-22 3.3E-27 221.4 13.1 280 18-298 9-324 (1049)
156 KOG4328 WD40 protein [Function 99.9 1.3E-20 2.9E-25 185.5 24.5 253 43-298 172-447 (498)
157 KOG0639 Transducin-like enhanc 99.9 3.2E-21 7E-26 191.2 19.9 238 55-298 417-660 (705)
158 KOG0302 Ribosome Assembly prot 99.9 7.5E-21 1.6E-25 182.5 20.3 240 56-297 150-435 (440)
159 KOG4378 Nuclear protein COP1 [ 99.9 7.8E-21 1.7E-25 188.3 20.6 262 17-283 36-305 (673)
160 KOG3617 WD40 and TPR repeat-co 99.9 3.5E-20 7.7E-25 194.6 25.8 171 591-764 731-1008(1416)
161 KOG2919 Guanine nucleotide-bin 99.9 4.4E-20 9.6E-25 173.6 23.3 273 18-293 52-362 (406)
162 KOG0650 WD40 repeat nucleolar 99.9 7.8E-20 1.7E-24 185.6 24.9 244 50-298 393-677 (733)
163 KOG1034 Transcriptional repres 99.9 5.7E-20 1.2E-24 173.4 22.1 282 10-298 33-380 (385)
164 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-20 5.7E-25 184.6 20.8 265 30-299 5-278 (673)
165 KOG0321 WD40 repeat-containing 99.9 5.2E-20 1.1E-24 188.4 22.1 277 20-300 54-390 (720)
166 KOG1009 Chromatin assembly com 99.9 1.6E-19 3.5E-24 175.4 23.4 279 14-297 12-368 (434)
167 KOG0642 Cell-cycle nuclear pro 99.8 1.3E-20 2.7E-25 190.7 15.0 261 6-268 285-570 (577)
168 KOG0307 Vesicle coat complex C 99.8 5.2E-21 1.1E-25 209.6 13.2 246 15-262 64-330 (1049)
169 KOG1009 Chromatin assembly com 99.8 1.4E-18 2.9E-23 169.0 28.0 319 142-489 13-368 (434)
170 KOG1188 WD40 repeat protein [G 99.8 1.4E-19 3.1E-24 171.9 19.8 272 28-300 41-345 (376)
171 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-16 3.5E-21 176.8 47.8 285 10-299 60-357 (466)
172 KOG1963 WD40 repeat protein [G 99.8 5.1E-17 1.1E-21 173.8 40.4 417 6-460 48-589 (792)
173 KOG1034 Transcriptional repres 99.8 1.7E-19 3.6E-24 170.3 18.6 243 13-258 87-382 (385)
174 KOG4497 Uncharacterized conser 99.8 1.2E-18 2.6E-23 164.3 22.5 384 20-489 13-428 (447)
175 KOG1007 WD repeat protein TSSC 99.8 7.3E-19 1.6E-23 162.9 20.3 250 7-259 55-361 (370)
176 KOG1445 Tumor-specific antigen 99.8 9.5E-19 2.1E-23 178.4 23.1 148 144-292 629-785 (1012)
177 KOG4283 Transcription-coupled 99.8 1.5E-18 3.2E-23 161.2 22.1 242 11-258 97-364 (397)
178 KOG1963 WD40 repeat protein [G 99.8 7.2E-17 1.6E-21 172.7 37.8 446 11-493 12-539 (792)
179 KOG0321 WD40 repeat-containing 99.8 8.6E-19 1.9E-23 179.6 21.1 251 9-262 94-394 (720)
180 KOG0644 Uncharacterized conser 99.8 3.3E-20 7E-25 195.1 10.8 284 3-300 178-467 (1113)
181 KOG1587 Cytoplasmic dynein int 99.8 7.2E-18 1.6E-22 180.9 26.4 259 37-298 222-513 (555)
182 KOG1517 Guanine nucleotide bin 99.8 6.6E-18 1.4E-22 182.4 25.9 287 10-299 1059-1379(1387)
183 KOG1007 WD repeat protein TSSC 99.8 5.1E-18 1.1E-22 157.4 21.2 268 28-298 27-358 (370)
184 KOG4227 WD40 repeat protein [G 99.8 1.8E-17 3.8E-22 159.8 23.5 293 8-304 49-390 (609)
185 KOG0322 G-protein beta subunit 99.8 1.7E-18 3.7E-23 158.6 13.9 285 6-298 5-320 (323)
186 KOG0290 Conserved WD40 repeat- 99.8 5.6E-17 1.2E-21 150.8 23.8 274 17-294 46-359 (364)
187 KOG0649 WD40 repeat protein [G 99.8 9.1E-17 2E-21 145.4 24.3 268 16-297 11-312 (325)
188 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-18 5.4E-23 174.3 15.8 246 51-299 288-559 (577)
189 KOG1920 IkappaB kinase complex 99.8 1.5E-14 3.2E-19 160.2 46.2 271 16-297 69-361 (1265)
190 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-15 3.5E-20 168.8 37.6 289 7-301 147-442 (466)
191 PF04762 IKI3: IKI3 family; I 99.8 7.6E-12 1.6E-16 145.8 67.5 385 16-417 22-518 (928)
192 KOG2919 Guanine nucleotide-bin 99.8 3.6E-17 7.8E-22 154.2 18.9 233 15-250 104-361 (406)
193 KOG1523 Actin-related protein 99.8 7.3E-17 1.6E-21 152.3 20.6 242 53-297 6-275 (361)
194 KOG1310 WD40 repeat protein [G 99.8 7.6E-17 1.6E-21 162.3 21.5 212 4-217 39-303 (758)
195 KOG1334 WD40 repeat protein [G 99.8 7.6E-18 1.7E-22 167.4 13.8 295 4-300 131-465 (559)
196 KOG1587 Cytoplasmic dynein int 99.8 9.1E-17 2E-21 172.5 22.7 244 14-259 241-516 (555)
197 KOG1912 WD40 repeat protein [G 99.8 3.9E-14 8.4E-19 148.8 41.0 366 4-398 44-572 (1062)
198 KOG4497 Uncharacterized conser 99.7 3.3E-16 7.1E-21 148.1 22.2 308 16-379 49-428 (447)
199 KOG0303 Actin-binding protein 99.7 1.9E-16 4.2E-21 153.4 20.6 227 10-240 76-320 (472)
200 KOG0290 Conserved WD40 repeat- 99.7 2.8E-16 6E-21 146.2 19.6 238 13-255 94-361 (364)
201 KOG0649 WD40 repeat protein [G 99.7 1.7E-15 3.6E-20 137.3 22.5 226 60-297 13-270 (325)
202 KOG1523 Actin-related protein 99.7 4.1E-16 9E-21 147.3 19.4 233 14-250 9-269 (361)
203 KOG4227 WD40 repeat protein [G 99.7 9.6E-16 2.1E-20 147.9 22.0 244 52-299 51-320 (609)
204 KOG3616 Selective LIM binding 99.7 7.4E-16 1.6E-20 160.5 22.7 259 464-794 338-617 (1636)
205 KOG0303 Actin-binding protein 99.7 4.5E-16 9.7E-21 150.9 18.8 154 136-291 75-236 (472)
206 KOG1188 WD40 repeat protein [G 99.7 4.5E-16 9.9E-21 148.3 18.5 197 70-268 41-251 (376)
207 PRK01742 tolB translocation pr 99.7 1.7E-15 3.8E-20 165.2 24.3 233 36-282 183-426 (429)
208 KOG1272 WD40-repeat-containing 99.7 5.1E-17 1.1E-21 160.6 10.8 270 17-297 131-405 (545)
209 PRK11028 6-phosphogluconolacto 99.7 2E-14 4.3E-19 152.3 31.0 259 33-298 8-301 (330)
210 KOG2110 Uncharacterized conser 99.7 7.8E-14 1.7E-18 134.8 31.1 236 14-260 4-249 (391)
211 KOG2110 Uncharacterized conser 99.7 2.1E-14 4.6E-19 138.7 26.4 232 58-298 6-245 (391)
212 KOG2111 Uncharacterized conser 99.7 1.3E-13 2.9E-18 130.6 30.6 238 16-260 6-257 (346)
213 KOG1517 Guanine nucleotide bin 99.7 4.5E-15 9.9E-20 160.9 23.6 288 58-382 1065-1381(1387)
214 KOG2139 WD40 repeat protein [G 99.7 2.9E-14 6.4E-19 136.9 25.6 249 15-294 98-368 (445)
215 KOG1310 WD40 repeat protein [G 99.7 8.3E-16 1.8E-20 154.9 14.0 217 49-266 42-310 (758)
216 KOG2111 Uncharacterized conser 99.7 2.9E-13 6.3E-18 128.4 30.1 233 59-300 7-255 (346)
217 PRK11028 6-phosphogluconolacto 99.7 2.9E-13 6.4E-18 143.4 33.6 267 74-382 7-304 (330)
218 PRK01742 tolB translocation pr 99.6 6.6E-15 1.4E-19 160.7 20.8 222 8-240 196-426 (429)
219 KOG0644 Uncharacterized conser 99.6 4.5E-16 9.8E-21 164.3 10.8 235 50-298 183-423 (1113)
220 KOG2139 WD40 repeat protein [G 99.6 4.2E-14 9E-19 135.9 22.9 191 99-295 98-304 (445)
221 PF02239 Cytochrom_D1: Cytochr 99.6 3.5E-13 7.5E-18 141.7 31.5 289 7-298 28-344 (369)
222 KOG0771 Prolactin regulatory e 99.6 8E-15 1.7E-19 144.4 15.2 195 61-259 148-354 (398)
223 KOG1354 Serine/threonine prote 99.6 9.1E-14 2E-18 132.7 21.5 245 14-262 24-362 (433)
224 KOG1240 Protein kinase contain 99.6 1.6E-13 3.4E-18 151.7 26.1 256 4-260 1037-1335(1431)
225 KOG1272 WD40-repeat-containing 99.6 1.9E-15 4.1E-20 149.7 10.0 231 57-298 129-359 (545)
226 KOG0322 G-protein beta subunit 99.6 1.3E-14 2.9E-19 133.3 14.8 287 49-381 6-322 (323)
227 KOG2321 WD40 repeat protein [G 99.6 2.3E-13 4.9E-18 138.6 24.3 283 5-297 42-339 (703)
228 KOG3881 Uncharacterized conser 99.6 1.2E-13 2.6E-18 134.6 21.2 260 13-282 53-342 (412)
229 KOG0771 Prolactin regulatory e 99.6 1.5E-14 3.2E-19 142.5 14.5 195 19-217 148-354 (398)
230 COG5354 Uncharacterized protei 99.6 1.7E-12 3.7E-17 130.8 28.6 344 10-408 27-418 (561)
231 PF02239 Cytochrom_D1: Cytochr 99.6 3.2E-12 6.9E-17 134.5 31.7 256 28-289 6-286 (369)
232 KOG1240 Protein kinase contain 99.6 6.4E-13 1.4E-17 147.0 27.0 263 42-307 1034-1340(1431)
233 PRK03629 tolB translocation pr 99.6 1.8E-12 4E-17 141.0 30.1 235 37-282 179-428 (429)
234 PRK02889 tolB translocation pr 99.6 5.8E-13 1.3E-17 145.2 25.0 235 37-282 176-425 (427)
235 KOG1334 WD40 repeat protein [G 99.6 2.9E-14 6.3E-19 142.3 13.2 253 49-302 134-425 (559)
236 PRK03629 tolB translocation pr 99.5 9.9E-13 2.1E-17 143.1 25.2 222 9-240 192-428 (429)
237 PRK04922 tolB translocation pr 99.5 1.5E-12 3.2E-17 142.7 25.7 234 37-281 184-432 (433)
238 PRK05137 tolB translocation pr 99.5 5.3E-12 1.1E-16 138.5 29.7 234 37-282 182-433 (435)
239 KOG2315 Predicted translation 99.5 4.1E-11 9E-16 122.6 33.3 321 36-408 10-373 (566)
240 PRK02889 tolB translocation pr 99.5 1.1E-12 2.4E-17 142.9 22.4 222 9-240 189-425 (427)
241 KOG2315 Predicted translation 99.5 1.5E-11 3.3E-16 125.7 28.1 272 15-298 34-381 (566)
242 KOG2314 Translation initiation 99.5 1.2E-11 2.5E-16 125.9 26.9 334 18-402 213-595 (698)
243 PRK04922 tolB translocation pr 99.5 2.3E-12 4.9E-17 141.2 23.0 222 8-239 196-432 (433)
244 PRK05137 tolB translocation pr 99.5 6.3E-12 1.4E-16 137.9 25.8 222 8-240 194-433 (435)
245 KOG2314 Translation initiation 99.5 3.1E-11 6.8E-16 122.8 27.8 306 59-408 212-556 (698)
246 KOG1912 WD40 repeat protein [G 99.5 2.2E-11 4.9E-16 128.5 27.5 441 17-472 17-572 (1062)
247 KOG2394 WD40 protein DMR-N9 [G 99.5 1.7E-12 3.8E-17 131.3 18.7 218 18-239 126-384 (636)
248 KOG1409 Uncharacterized conser 99.5 3.2E-12 6.8E-17 122.5 18.6 211 4-217 13-270 (404)
249 KOG2394 WD40 protein DMR-N9 [G 99.5 2.1E-12 4.6E-17 130.7 18.4 218 60-281 126-384 (636)
250 PF04762 IKI3: IKI3 family; I 99.5 4.6E-09 1E-13 122.9 48.0 277 14-299 74-454 (928)
251 COG5354 Uncharacterized protei 99.5 1.5E-10 3.2E-15 117.1 30.1 243 40-290 15-293 (561)
252 KOG3881 Uncharacterized conser 99.5 6.4E-12 1.4E-16 122.7 19.6 219 15-240 105-342 (412)
253 PF08662 eIF2A: Eukaryotic tra 99.4 1.3E-11 2.8E-16 117.7 21.1 150 18-174 8-180 (194)
254 KOG0974 WD-repeat protein WDR6 99.4 7.5E-10 1.6E-14 121.8 36.5 196 16-217 88-288 (967)
255 COG4946 Uncharacterized protei 99.4 7.5E-09 1.6E-13 103.7 39.6 180 109-296 276-468 (668)
256 PF08662 eIF2A: Eukaryotic tra 99.4 3.6E-11 7.7E-16 114.7 21.1 156 103-267 9-186 (194)
257 TIGR02800 propeller_TolB tol-p 99.4 2E-10 4.3E-15 126.5 29.0 232 37-279 170-416 (417)
258 KOG1354 Serine/threonine prote 99.4 9.9E-11 2.1E-15 112.3 22.3 239 57-299 25-357 (433)
259 PRK00178 tolB translocation pr 99.4 2.7E-10 5.9E-15 125.4 29.3 234 38-282 180-428 (430)
260 PRK04792 tolB translocation pr 99.4 2.8E-10 6.1E-15 124.5 27.6 235 38-282 199-447 (448)
261 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.4E-13 108.4 37.7 266 30-297 2-318 (345)
262 PRK00178 tolB translocation pr 99.3 2.3E-10 4.9E-15 126.1 25.7 222 9-240 192-428 (430)
263 PRK01029 tolB translocation pr 99.3 4.3E-10 9.4E-15 121.9 26.3 227 9-241 178-426 (428)
264 KOG1920 IkappaB kinase complex 99.3 6E-08 1.3E-12 108.9 42.5 300 99-454 68-392 (1265)
265 TIGR02800 propeller_TolB tol-p 99.3 2.9E-10 6.3E-15 125.2 25.0 219 9-237 183-416 (417)
266 KOG4547 WD40 repeat-containing 99.3 4.5E-10 9.8E-15 116.2 24.2 188 25-217 3-220 (541)
267 PRK01029 tolB translocation pr 99.3 1.1E-09 2.4E-14 118.8 27.9 240 37-283 165-426 (428)
268 KOG2321 WD40 repeat protein [G 99.3 6.3E-11 1.4E-15 121.2 16.6 195 20-217 138-343 (703)
269 PF10282 Lactonase: Lactonase, 99.3 2.1E-08 4.5E-13 106.3 36.5 263 15-279 36-345 (345)
270 PRK04792 tolB translocation pr 99.3 2.9E-10 6.3E-15 124.4 22.9 222 10-240 212-447 (448)
271 KOG0280 Uncharacterized conser 99.3 5.1E-10 1.1E-14 105.4 20.3 240 16-257 70-331 (339)
272 KOG0280 Uncharacterized conser 99.3 6.3E-10 1.4E-14 104.8 20.5 249 36-288 45-318 (339)
273 KOG0974 WD-repeat protein WDR6 99.3 1.7E-10 3.7E-15 126.8 19.4 267 16-299 8-286 (967)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.8E-08 1E-12 100.2 35.9 261 26-297 11-326 (352)
275 KOG3616 Selective LIM binding 99.3 3.5E-10 7.5E-15 119.0 19.9 143 640-782 558-720 (1636)
276 KOG1064 RAVE (regulator of V-A 99.2 3.9E-11 8.6E-16 137.6 12.8 199 12-226 2205-2407(2439)
277 KOG4547 WD40 repeat-containing 99.2 2E-09 4.4E-14 111.5 24.0 186 67-258 3-219 (541)
278 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.5E-08 9.8E-13 100.5 33.0 238 23-267 53-338 (352)
279 TIGR03300 assembly_YfgL outer 99.2 4.5E-08 9.6E-13 106.0 31.7 255 27-298 65-335 (377)
280 KOG2114 Vacuolar assembly/sort 99.2 3.5E-07 7.6E-12 99.2 36.8 463 193-780 31-534 (933)
281 TIGR03300 assembly_YfgL outer 99.2 3.9E-08 8.5E-13 106.4 30.3 256 26-297 104-375 (377)
282 COG4946 Uncharacterized protei 99.1 2.8E-07 6.1E-12 92.8 31.5 214 24-248 275-507 (668)
283 PLN02919 haloacid dehalogenase 99.1 1.5E-07 3.2E-12 112.9 34.3 239 19-263 571-892 (1057)
284 KOG4532 WD40-like repeat conta 99.1 2.8E-08 6E-13 92.6 21.2 239 20-260 72-332 (344)
285 COG5170 CDC55 Serine/threonine 99.1 4.6E-09 9.9E-14 99.5 15.9 240 14-257 25-365 (460)
286 KOG1064 RAVE (regulator of V-A 99.1 6.6E-10 1.4E-14 127.9 11.8 197 56-269 2207-2408(2439)
287 KOG1409 Uncharacterized conser 99.1 8.4E-09 1.8E-13 99.4 16.8 243 49-299 16-268 (404)
288 COG5170 CDC55 Serine/threonine 99.0 2.4E-08 5.1E-13 94.8 19.3 238 57-298 26-364 (460)
289 PRK04043 tolB translocation pr 99.0 6.9E-08 1.5E-12 104.0 25.4 205 16-232 188-414 (419)
290 KOG0309 Conserved WD40 repeat- 99.0 2.2E-09 4.9E-14 113.0 12.7 243 18-260 70-340 (1081)
291 PRK04043 tolB translocation pr 99.0 5.7E-07 1.2E-11 96.9 30.2 210 37-259 169-400 (419)
292 KOG4190 Uncharacterized conser 99.0 1.4E-09 3.1E-14 110.5 9.4 280 9-297 729-1032(1034)
293 KOG3914 WD repeat protein WDR4 99.0 9E-09 2E-13 101.7 14.6 161 17-181 64-231 (390)
294 COG2706 3-carboxymuconate cycl 99.0 2.1E-06 4.6E-11 84.5 30.2 257 36-294 15-313 (346)
295 KOG4190 Uncharacterized conser 99.0 2.8E-09 6.1E-14 108.4 10.1 242 50-298 728-985 (1034)
296 PF15492 Nbas_N: Neuroblastoma 99.0 1.5E-06 3.3E-11 82.9 27.6 234 21-268 3-268 (282)
297 KOG4649 PQQ (pyrrolo-quinoline 98.9 1.2E-05 2.6E-10 75.2 31.7 144 27-174 23-166 (354)
298 COG2706 3-carboxymuconate cycl 98.9 7.1E-06 1.5E-10 80.9 31.5 249 13-265 37-329 (346)
299 PLN02919 haloacid dehalogenase 98.9 1.6E-06 3.5E-11 104.0 33.3 235 61-299 571-886 (1057)
300 KOG4714 Nucleoporin [Nuclear s 98.9 7.6E-09 1.6E-13 95.8 10.4 149 26-174 100-255 (319)
301 KOG0309 Conserved WD40 repeat- 98.9 1.3E-08 2.9E-13 107.4 13.5 280 15-298 24-336 (1081)
302 KOG1832 HIV-1 Vpr-binding prot 98.9 9.1E-10 2E-14 118.1 4.9 266 4-290 1090-1378(1516)
303 PF08450 SGL: SMP-30/Gluconola 98.9 5.4E-06 1.2E-10 83.6 31.8 218 62-290 4-244 (246)
304 PF08450 SGL: SMP-30/Gluconola 98.9 6.3E-06 1.4E-10 83.1 31.5 217 20-248 4-244 (246)
305 KOG4532 WD40-like repeat conta 98.9 5.3E-07 1.1E-11 84.3 21.1 226 34-270 49-293 (344)
306 PF13360 PQQ_2: PQQ-like domai 98.9 1.4E-06 2.9E-11 87.8 26.4 221 36-266 2-237 (238)
307 PF04053 Coatomer_WDAD: Coatom 98.9 7.3E-06 1.6E-10 87.9 32.3 184 229-488 32-219 (443)
308 KOG4714 Nucleoporin [Nuclear s 98.8 6.2E-08 1.4E-12 89.9 13.6 197 18-218 39-255 (319)
309 PRK11138 outer membrane biogen 98.8 7.6E-06 1.6E-10 88.9 30.4 258 27-297 69-349 (394)
310 PRK11138 outer membrane biogen 98.8 5.4E-06 1.2E-10 90.0 28.4 259 27-297 120-390 (394)
311 KOG1832 HIV-1 Vpr-binding prot 98.8 4.6E-09 1E-13 112.8 3.9 218 49-286 1093-1316(1516)
312 KOG3914 WD repeat protein WDR4 98.7 1.9E-07 4.2E-12 92.5 14.1 161 59-226 64-232 (390)
313 PF07433 DUF1513: Protein of u 98.7 2.6E-05 5.7E-10 77.2 27.9 233 16-256 5-282 (305)
314 KOG0882 Cyclophilin-related pe 98.7 3.9E-07 8.5E-12 91.3 14.5 250 14-269 8-315 (558)
315 PF07433 DUF1513: Protein of u 98.7 5.4E-05 1.2E-09 75.0 29.1 227 59-295 6-279 (305)
316 KOG3621 WD40 repeat-containing 98.7 5.1E-06 1.1E-10 88.6 23.2 207 14-225 32-253 (726)
317 KOG4649 PQQ (pyrrolo-quinoline 98.7 0.00016 3.6E-09 67.8 30.1 187 111-317 23-213 (354)
318 KOG1275 PAB-dependent poly(A) 98.7 8.5E-07 1.8E-11 96.6 17.4 181 69-257 147-340 (1118)
319 KOG2066 Vacuolar assembly/sort 98.7 7.8E-07 1.7E-11 95.9 16.9 182 15-217 39-233 (846)
320 KOG1275 PAB-dependent poly(A) 98.6 7.5E-07 1.6E-11 97.1 16.1 181 27-215 147-340 (1118)
321 PF13360 PQQ_2: PQQ-like domai 98.6 6E-05 1.3E-09 75.8 29.1 211 77-298 1-227 (238)
322 PF00930 DPPIV_N: Dipeptidyl p 98.6 3.7E-05 8E-10 81.9 27.9 263 24-291 1-347 (353)
323 KOG2114 Vacuolar assembly/sort 98.6 7.7E-06 1.7E-10 89.1 21.8 204 21-229 29-256 (933)
324 KOG2695 WD40 repeat protein [G 98.6 2.6E-07 5.6E-12 89.4 9.3 153 73-228 228-387 (425)
325 COG5290 IkappaB kinase complex 98.6 0.00064 1.4E-08 73.7 35.1 134 643-776 825-988 (1243)
326 PF15492 Nbas_N: Neuroblastoma 98.6 6.9E-05 1.5E-09 71.9 25.3 222 63-298 3-256 (282)
327 KOG2695 WD40 repeat protein [G 98.5 3.5E-07 7.6E-12 88.5 8.6 160 106-271 218-388 (425)
328 KOG1645 RING-finger-containing 98.4 1.3E-05 2.9E-10 79.6 16.4 252 3-259 181-461 (463)
329 PF00400 WD40: WD domain, G-be 98.4 1.2E-06 2.7E-11 58.8 6.6 39 47-85 1-39 (39)
330 PF00400 WD40: WD domain, G-be 98.4 1.1E-06 2.4E-11 59.0 6.4 39 89-127 1-39 (39)
331 KOG1645 RING-finger-containing 98.4 2.2E-05 4.7E-10 78.1 17.5 249 39-292 175-453 (463)
332 PF14583 Pectate_lyase22: Olig 98.4 0.0035 7.6E-08 64.5 33.7 243 43-291 16-302 (386)
333 PF06433 Me-amine-dh_H: Methyl 98.4 0.00077 1.7E-08 67.9 28.2 246 20-270 40-331 (342)
334 cd00216 PQQ_DH Dehydrogenases 98.3 0.00043 9.2E-09 77.1 28.5 262 27-297 61-420 (488)
335 KOG2066 Vacuolar assembly/sort 98.3 5.8E-05 1.3E-09 82.0 20.2 182 58-259 40-233 (846)
336 KOG0882 Cyclophilin-related pe 98.3 1E-05 2.2E-10 81.4 13.4 207 56-267 8-239 (558)
337 cd00216 PQQ_DH Dehydrogenases 98.3 0.00072 1.6E-08 75.3 28.9 234 28-270 111-435 (488)
338 PF14583 Pectate_lyase22: Olig 98.2 0.0055 1.2E-07 63.1 30.2 266 22-291 42-370 (386)
339 PF11768 DUF3312: Protein of u 98.2 0.00032 7E-09 74.4 21.9 115 57-175 205-331 (545)
340 PF06977 SdiA-regulated: SdiA- 98.2 0.0012 2.6E-08 64.8 24.6 201 9-214 15-247 (248)
341 KOG1008 Uncharacterized conser 98.2 4.6E-07 9.9E-12 95.0 0.5 200 14-217 55-275 (783)
342 PF08596 Lgl_C: Lethal giant l 98.1 0.00096 2.1E-08 70.8 25.1 262 17-287 3-322 (395)
343 COG0823 TolB Periplasmic compo 98.1 0.00017 3.6E-09 77.4 18.7 183 10-198 187-382 (425)
344 PRK02888 nitrous-oxide reducta 98.1 0.0012 2.5E-08 72.1 24.3 217 26-260 140-405 (635)
345 PF11768 DUF3312: Protein of u 98.1 9.2E-05 2E-09 78.4 15.5 118 18-137 208-337 (545)
346 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0055 1.2E-07 66.2 29.2 210 20-241 33-271 (410)
347 COG0823 TolB Periplasmic compo 98.1 0.00041 9E-09 74.4 20.4 203 38-248 174-388 (425)
348 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0065 1.4E-07 65.6 29.6 192 80-284 62-272 (410)
349 PF08596 Lgl_C: Lethal giant l 98.0 0.0028 6E-08 67.4 26.1 229 59-298 3-287 (395)
350 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0013 2.9E-08 70.0 23.7 231 15-248 42-346 (353)
351 PF02897 Peptidase_S9_N: Proly 98.0 0.018 3.9E-07 63.2 32.8 243 17-264 125-409 (414)
352 PF06977 SdiA-regulated: SdiA- 98.0 0.0083 1.8E-07 59.0 26.0 199 53-256 17-247 (248)
353 PF00780 CNH: CNH domain; Int 98.0 0.01 2.2E-07 61.0 28.0 227 25-270 5-266 (275)
354 PRK02888 nitrous-oxide reducta 97.9 0.0024 5.2E-08 69.8 22.7 216 22-249 199-451 (635)
355 PF03178 CPSF_A: CPSF A subuni 97.9 0.0056 1.2E-07 64.4 24.8 212 79-297 2-261 (321)
356 KOG3621 WD40 repeat-containing 97.8 0.0014 3E-08 70.7 19.2 139 98-239 32-180 (726)
357 COG3391 Uncharacterized conser 97.8 0.034 7.3E-07 59.8 30.2 262 17-282 32-309 (381)
358 PF06433 Me-amine-dh_H: Methyl 97.8 0.053 1.2E-06 55.0 31.6 253 37-299 17-318 (342)
359 COG3391 Uncharacterized conser 97.8 0.088 1.9E-06 56.6 32.0 252 39-297 13-279 (381)
360 KOG1008 Uncharacterized conser 97.7 7.4E-06 1.6E-10 86.2 0.5 195 99-297 56-271 (783)
361 KOG4640 Anaphase-promoting com 97.7 0.00018 4E-09 76.2 9.7 95 57-152 20-115 (665)
362 KOG4640 Anaphase-promoting com 97.7 0.00019 4E-09 76.2 9.7 94 14-108 19-114 (665)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.13 2.8E-06 57.7 32.7 195 27-222 69-338 (527)
364 PF03178 CPSF_A: CPSF A subuni 97.7 0.041 8.9E-07 57.9 27.1 212 37-256 2-262 (321)
365 KOG1897 Damage-specific DNA bi 97.6 0.25 5.5E-06 56.2 42.2 401 58-492 488-942 (1096)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.07 1.5E-06 59.8 28.4 237 28-270 121-501 (527)
367 PF00780 CNH: CNH domain; Int 97.5 0.1 2.2E-06 53.5 26.6 148 110-267 6-173 (275)
368 PF02897 Peptidase_S9_N: Proly 97.4 0.18 3.9E-06 55.3 29.9 220 60-285 126-384 (414)
369 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.079 1.7E-06 56.3 25.1 89 20-109 6-118 (415)
370 PRK13616 lipoprotein LpqB; Pro 97.4 0.013 2.9E-07 65.9 19.5 184 16-213 350-564 (591)
371 COG3386 Gluconolactonase [Carb 97.4 0.12 2.6E-06 53.0 24.7 218 21-248 30-274 (307)
372 PF08553 VID27: VID27 cytoplas 97.2 0.042 9.2E-07 62.8 21.7 134 35-172 502-646 (794)
373 KOG2280 Vacuolar assembly/sort 97.2 0.59 1.3E-05 51.8 33.7 104 650-764 448-561 (829)
374 PHA02713 hypothetical protein; 97.1 0.035 7.6E-07 62.8 19.3 217 38-263 273-537 (557)
375 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.068 1.5E-06 44.4 15.6 102 188-297 2-110 (111)
376 COG3204 Uncharacterized protei 97.1 0.15 3.2E-06 50.1 20.3 169 54-225 82-270 (316)
377 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.045 9.7E-07 45.4 14.5 101 60-168 2-109 (111)
378 KOG0985 Vesicle coat protein c 97.0 0.0057 1.2E-07 68.7 12.0 141 620-764 1052-1248(1666)
379 PF08553 VID27: VID27 cytoplas 97.0 0.056 1.2E-06 61.9 20.3 144 68-216 492-646 (794)
380 COG3204 Uncharacterized protei 97.0 0.18 4E-06 49.4 20.6 165 11-175 81-265 (316)
381 KOG2079 Vacuolar assembly/sort 97.0 0.014 3E-07 66.4 15.0 110 59-172 89-202 (1206)
382 PF14870 PSII_BNR: Photosynthe 97.0 0.51 1.1E-05 48.1 31.8 271 98-415 15-301 (302)
383 PRK13616 lipoprotein LpqB; Pro 97.0 0.077 1.7E-06 59.9 20.8 184 58-255 350-564 (591)
384 KOG4499 Ca2+-binding protein R 97.0 0.25 5.4E-06 46.5 20.2 213 28-247 28-272 (310)
385 smart00320 WD40 WD40 repeats. 97.0 0.0023 4.9E-08 42.0 5.6 39 89-127 2-40 (40)
386 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.72 1.6E-05 49.3 29.2 146 111-258 37-203 (418)
387 smart00320 WD40 WD40 repeats. 97.0 0.0025 5.5E-08 41.8 5.7 38 48-85 3-40 (40)
388 PF15390 DUF4613: Domain of un 96.9 0.77 1.7E-05 49.6 25.6 151 15-173 19-186 (671)
389 KOG2079 Vacuolar assembly/sort 96.9 0.011 2.5E-07 67.0 12.9 100 26-128 98-202 (1206)
390 COG3386 Gluconolactonase [Carb 96.9 0.38 8.3E-06 49.3 22.9 219 64-290 31-274 (307)
391 PF14870 PSII_BNR: Photosynthe 96.9 0.65 1.4E-05 47.3 30.0 230 56-297 15-257 (302)
392 PRK10115 protease 2; Provision 96.8 1.5 3.3E-05 51.1 34.9 237 17-262 128-397 (686)
393 KOG2247 WD40 repeat-containing 96.8 0.00022 4.7E-09 73.3 -0.7 279 14-301 33-368 (615)
394 KOG2444 WD40 repeat protein [G 96.7 0.0019 4.2E-08 60.2 4.7 141 114-259 33-177 (238)
395 PF05096 Glu_cyclase_2: Glutam 96.7 0.67 1.5E-05 45.6 23.4 180 18-205 47-249 (264)
396 COG3490 Uncharacterized protei 96.7 0.33 7.2E-06 47.2 19.3 101 146-248 71-180 (366)
397 KOG4441 Proteins containing BT 96.7 0.13 2.8E-06 58.1 19.7 227 26-261 284-548 (571)
398 COG3490 Uncharacterized protei 96.6 0.78 1.7E-05 44.7 23.4 230 59-298 69-345 (366)
399 PF14727 PHTB1_N: PTHB1 N-term 96.5 1.5 3.4E-05 46.9 33.1 270 27-307 37-367 (418)
400 KOG4441 Proteins containing BT 96.5 0.19 4.1E-06 56.8 19.4 219 67-297 283-537 (571)
401 PHA02713 hypothetical protein; 96.5 0.31 6.7E-06 55.3 21.2 204 80-293 273-523 (557)
402 PF15390 DUF4613: Domain of un 96.5 1.6 3.5E-05 47.3 24.4 145 14-162 55-220 (671)
403 KOG2395 Protein involved in va 96.4 0.049 1.1E-06 57.2 12.7 141 154-297 344-497 (644)
404 KOG1897 Damage-specific DNA bi 96.4 2.6 5.7E-05 48.5 47.7 162 99-263 487-662 (1096)
405 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 0.97 2.1E-05 48.2 22.3 85 141-226 306-407 (415)
406 TIGR03074 PQQ_membr_DH membran 96.3 1.7 3.6E-05 50.8 25.6 230 27-268 194-486 (764)
407 KOG2395 Protein involved in va 96.2 0.083 1.8E-06 55.6 13.3 146 66-217 342-500 (644)
408 PLN03081 pentatricopeptide (PP 96.2 0.036 7.9E-07 65.4 12.3 103 647-749 267-386 (697)
409 PRK10115 protease 2; Provision 96.2 3.6 7.9E-05 48.0 29.8 194 59-257 128-342 (686)
410 PRK13684 Ycf48-like protein; P 96.2 2.1 4.6E-05 45.0 28.9 225 57-297 45-284 (334)
411 PF05694 SBP56: 56kDa selenium 96.2 2.2 4.7E-05 45.0 28.4 192 68-261 86-344 (461)
412 KOG3630 Nuclear pore complex, 96.2 0.21 4.6E-06 57.6 16.8 184 62-248 46-262 (1405)
413 PF07995 GSDH: Glucose / Sorbo 96.2 2.2 4.7E-05 44.9 24.0 234 17-254 3-330 (331)
414 KOG2444 WD40 repeat protein [G 96.1 0.017 3.6E-07 54.1 7.0 104 27-130 70-178 (238)
415 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.6 3.5E-05 43.4 25.0 221 60-281 25-307 (336)
416 PF12894 Apc4_WD40: Anaphase-p 96.1 0.02 4.4E-07 39.4 5.7 34 14-48 10-43 (47)
417 PF10647 Gmad1: Lipoprotein Lp 96.0 1.5 3.4E-05 43.9 21.1 145 17-165 25-187 (253)
418 PF12894 Apc4_WD40: Anaphase-p 96.0 0.022 4.9E-07 39.2 5.3 34 57-91 11-44 (47)
419 COG3292 Predicted periplasmic 95.9 1 2.3E-05 48.3 19.5 272 15-297 164-443 (671)
420 KOG4499 Ca2+-binding protein R 95.8 1.8 3.9E-05 41.0 22.0 205 70-281 28-263 (310)
421 PLN03081 pentatricopeptide (PP 95.8 0.088 1.9E-06 62.1 12.8 153 601-763 373-555 (697)
422 PF05694 SBP56: 56kDa selenium 95.7 3.6 7.8E-05 43.5 23.0 211 154-384 86-344 (461)
423 TIGR00990 3a0801s09 mitochondr 95.5 0.068 1.5E-06 62.0 10.6 129 620-748 335-492 (615)
424 PF13429 TPR_15: Tetratricopep 95.5 0.021 4.5E-07 58.8 5.7 50 646-695 117-173 (280)
425 KOG2247 WD40 repeat-containing 95.5 0.0045 9.8E-08 64.0 0.6 81 669-762 4-84 (615)
426 KOG2280 Vacuolar assembly/sort 95.4 2.3 5E-05 47.5 20.5 200 78-283 63-271 (829)
427 PRK13684 Ycf48-like protein; P 95.4 4.2 9.2E-05 42.8 27.1 268 15-298 45-328 (334)
428 PF10647 Gmad1: Lipoprotein Lp 95.4 3.4 7.4E-05 41.4 20.8 146 101-251 25-187 (253)
429 PHA03098 kelch-like protein; P 95.4 0.85 1.8E-05 52.0 18.6 146 27-176 295-467 (534)
430 KOG2076 RNA polymerase III tra 95.3 0.1 2.3E-06 58.7 10.4 103 652-762 152-267 (895)
431 PLN03077 Protein ECB2; Provisi 95.3 0.13 2.9E-06 62.4 12.4 105 647-751 331-452 (857)
432 PHA03098 kelch-like protein; P 95.3 0.95 2.1E-05 51.6 18.6 185 67-262 293-514 (534)
433 PLN03218 maturation of RBCL 1; 95.2 0.23 5E-06 60.2 13.6 48 647-694 480-533 (1060)
434 PF05096 Glu_cyclase_2: Glutam 95.1 3.7 8.1E-05 40.5 26.0 183 101-291 46-250 (264)
435 KOG1155 Anaphase-promoting com 95.0 0.18 4E-06 52.4 10.2 86 666-762 430-533 (559)
436 KOG4626 O-linked N-acetylgluco 94.8 0.55 1.2E-05 50.8 13.5 49 647-695 294-347 (966)
437 PLN03218 maturation of RBCL 1; 94.8 0.15 3.4E-06 61.7 10.8 148 601-748 450-639 (1060)
438 PF10168 Nup88: Nuclear pore c 94.7 9.1 0.0002 44.5 24.0 33 229-261 146-181 (717)
439 PF14938 SNAP: Soluble NSF att 94.6 0.25 5.5E-06 50.6 10.5 104 654-779 30-143 (282)
440 KOG3630 Nuclear pore complex, 94.4 0.36 7.8E-06 55.8 11.7 140 145-288 103-260 (1405)
441 PHA02790 Kelch-like protein; P 94.4 2.1 4.6E-05 47.8 17.9 143 27-176 272-426 (480)
442 KOG0550 Molecular chaperone (D 94.4 0.036 7.8E-07 56.5 3.5 154 669-827 250-432 (486)
443 TIGR00990 3a0801s09 mitochondr 94.4 0.43 9.3E-06 55.4 13.0 47 648-694 408-459 (615)
444 PHA02790 Kelch-like protein; P 94.3 2.2 4.8E-05 47.6 17.8 182 68-261 271-472 (480)
445 TIGR03074 PQQ_membr_DH membran 94.1 14 0.0003 43.5 24.0 114 155-269 194-354 (764)
446 PF10168 Nup88: Nuclear pore c 93.9 6.2 0.00013 45.8 20.6 99 17-137 86-187 (717)
447 KOG4626 O-linked N-acetylgluco 93.9 0.17 3.6E-06 54.5 7.4 77 621-697 155-247 (966)
448 PRK15363 pathogenicity island 93.9 0.65 1.4E-05 41.7 10.0 78 649-747 45-127 (157)
449 KOG2003 TPR repeat-containing 93.9 0.48 1E-05 48.9 10.2 167 591-757 422-647 (840)
450 PRK15174 Vi polysaccharide exp 93.8 0.66 1.4E-05 54.0 12.9 48 647-694 118-170 (656)
451 PRK11788 tetratricopeptide rep 93.7 1.4 3E-05 47.9 14.7 73 623-695 114-207 (389)
452 PRK10370 formate-dependent nit 93.6 0.79 1.7E-05 44.0 11.0 46 652-697 52-102 (198)
453 COG3063 PilF Tfp pilus assembl 93.5 0.81 1.8E-05 43.4 10.2 110 653-764 56-185 (250)
454 KOG1983 Tomosyn and related SN 93.4 2 4.4E-05 51.8 16.1 222 16-263 36-268 (993)
455 PRK15359 type III secretion sy 93.3 0.4 8.6E-06 43.3 8.0 77 650-747 35-116 (144)
456 TIGR02604 Piru_Ver_Nterm putat 93.3 3.3 7.2E-05 44.4 16.3 140 16-160 14-200 (367)
457 PF12234 Rav1p_C: RAVE protein 93.1 3.1 6.7E-05 46.8 15.8 102 155-258 41-155 (631)
458 KOG2076 RNA polymerase III tra 93.1 0.61 1.3E-05 52.9 10.3 77 651-735 185-266 (895)
459 PF12895 Apc3: Anaphase-promot 92.9 0.26 5.7E-06 39.5 5.6 75 652-748 2-83 (84)
460 KOG1916 Nuclear protein, conta 92.8 0.097 2.1E-06 58.6 3.7 115 10-127 127-263 (1283)
461 PRK11447 cellulose synthase su 92.8 0.47 1E-05 59.5 10.2 128 598-733 505-660 (1157)
462 PLN03077 Protein ECB2; Provisi 92.7 0.92 2E-05 55.2 12.5 157 600-764 536-719 (857)
463 KOG1898 Splicing factor 3b, su 92.6 26 0.00057 41.2 33.0 99 28-126 550-668 (1205)
464 PRK15174 Vi polysaccharide exp 92.6 2 4.3E-05 50.1 14.3 44 651-694 224-276 (656)
465 PF10602 RPN7: 26S proteasome 92.5 0.82 1.8E-05 42.8 9.1 99 652-750 16-140 (177)
466 PF13432 TPR_16: Tetratricopep 92.5 0.17 3.7E-06 38.2 3.7 46 649-694 7-57 (65)
467 PF12234 Rav1p_C: RAVE protein 92.3 5.1 0.00011 45.2 16.2 111 59-172 31-155 (631)
468 KOG1586 Protein required for f 92.3 0.2 4.4E-06 47.2 4.5 90 646-757 21-114 (288)
469 KOG2377 Uncharacterized conser 92.2 4.5 9.8E-05 42.4 14.3 119 97-218 64-186 (657)
470 TIGR03118 PEPCTERM_chp_1 conse 92.1 14 0.00031 37.0 25.3 219 18-239 25-307 (336)
471 PF10313 DUF2415: Uncharacteri 92.0 0.78 1.7E-05 30.6 5.7 32 100-131 1-35 (43)
472 PF09976 TPR_21: Tetratricopep 91.9 0.42 9.2E-06 43.2 6.2 48 647-694 93-144 (145)
473 KOG3060 Uncharacterized conser 91.8 0.73 1.6E-05 44.3 7.6 101 595-695 59-181 (289)
474 PF14781 BBS2_N: Ciliary BBSom 91.7 8.4 0.00018 33.5 13.9 120 103-225 2-133 (136)
475 PRK12370 invasion protein regu 91.6 1.4 3E-05 50.4 11.4 102 648-749 347-467 (553)
476 PF14559 TPR_19: Tetratricopep 91.5 0.28 6E-06 37.4 4.0 46 650-695 2-52 (68)
477 PF10214 Rrn6: RNA polymerase 91.5 36 0.00079 40.5 23.8 160 13-175 77-278 (765)
478 PF08728 CRT10: CRT10; InterP 91.5 7.1 0.00015 44.5 16.1 144 27-172 49-245 (717)
479 KOG0553 TPR repeat-containing 91.5 0.18 3.9E-06 49.7 3.4 79 624-702 96-183 (304)
480 PF13429 TPR_15: Tetratricopep 91.4 0.035 7.6E-07 57.1 -1.6 49 647-695 16-71 (280)
481 COG1520 FOG: WD40-like repeat 91.4 23 0.0005 38.0 30.5 193 29-228 70-279 (370)
482 PF00637 Clathrin: Region in C 91.4 0.045 9.6E-07 49.6 -0.7 86 666-765 40-125 (143)
483 PF07995 GSDH: Glucose / Sorbo 91.3 22 0.00047 37.5 29.6 232 59-296 3-330 (331)
484 KOG2377 Uncharacterized conser 91.3 4.2 9.1E-05 42.6 12.9 143 114-261 36-187 (657)
485 KOG4460 Nuclear pore complex, 91.3 4.3 9.3E-05 43.3 13.1 99 144-267 105-206 (741)
486 PRK10747 putative protoheme IX 91.2 1.1 2.3E-05 48.8 9.5 47 650-696 95-146 (398)
487 COG5010 TadD Flp pilus assembl 91.1 1.5 3.2E-05 42.6 9.1 77 649-725 110-199 (257)
488 TIGR02917 PEP_TPR_lipo putativ 91.0 1.7 3.7E-05 53.3 12.4 217 597-822 610-863 (899)
489 PF10313 DUF2415: Uncharacteri 91.0 1.1 2.4E-05 29.9 5.7 31 16-46 1-34 (43)
490 PF13414 TPR_11: TPR repeat; P 90.9 0.8 1.7E-05 34.9 6.1 31 667-697 2-32 (69)
491 PRK11788 tetratricopeptide rep 90.8 1.4 3.1E-05 47.8 10.3 97 600-696 119-242 (389)
492 PF13176 TPR_7: Tetratricopept 90.8 0.32 6.9E-06 31.4 3.1 23 671-693 2-24 (36)
493 PF13424 TPR_12: Tetratricopep 90.8 0.87 1.9E-05 35.8 6.3 66 669-748 6-71 (78)
494 PF12768 Rax2: Cortical protei 90.5 9.1 0.0002 38.7 14.5 117 79-196 16-147 (281)
495 PRK09782 bacteriophage N4 rece 90.5 2 4.3E-05 52.0 11.6 96 600-695 521-636 (987)
496 COG5290 IkappaB kinase complex 90.4 1.6 3.6E-05 48.6 9.7 97 667-764 934-1036(1243)
497 KOG1840 Kinesin light chain [C 90.3 0.47 1E-05 52.0 5.7 24 672-695 245-268 (508)
498 TIGR02604 Piru_Ver_Nterm putat 90.2 15 0.00032 39.4 17.1 143 100-247 14-201 (367)
499 PRK09782 bacteriophage N4 rece 90.2 5.4 0.00012 48.4 14.9 45 651-695 521-569 (987)
500 smart00036 CNH Domain found in 90.2 25 0.00055 36.4 30.4 231 27-269 13-280 (302)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-146 Score=1099.38 Aligned_cols=793 Identities=67% Similarity=1.169 Sum_probs=780.8
Q ss_pred ChhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002881 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (871)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 82 (871)
+++++++++..|+++|++++|||..++++++.++|.|.|||++++.+++.++..+.||++..|.+..+|+++|++|+.|+
T Consensus 1 ~~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 1 MKLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred CcchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE
Confidence 35677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
|||++|+++++.|.+|++.|+|++.+|+.++++++|+|.+|++||++.++.+.+++.+|.+.|++++|+|++.+.|++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCC
Q 002881 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~ 242 (871)
.|++|++|.+.+..+.+++.+|..+|+|+.|.+.|++|++++|++|..++|||+++.+|++++.+|.++|+.++|+|.-+
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecce
Q 002881 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEI 322 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (871)
++++||+||+++||+..|.++..+++...+++|+++..+.++.+++|+++|.+.+.++.+.|.++|+.+|+++|+.++++
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei 320 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEI 320 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCcCceeEEEEecC-C
Q 002881 323 QTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSD-G 401 (871)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~-~ 401 (871)
+..++.+.....++.||+++++.++++++++.+|+.+++||+|+++++|++|+++||+...||++.+|+...++|+++ +
T Consensus 321 ~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsn 400 (794)
T KOG0276|consen 321 QAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSN 400 (794)
T ss_pred eeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCC
Confidence 999999988888899999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred cEEEEecCCeEEEeecccccceeeecCccceeeecCcEEEEEeCCeEEEEeccCCcEEEEEEcceeEEEEcCCCCEEEEE
Q 002881 402 EYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIA 481 (871)
Q Consensus 402 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~s~~~i~~~~~La~~~~~~v~~~d~~~~~~~~~~~~~i~~i~~s~~~~~la~~ 481 (871)
.|++..+++.|+++ .+|++.+++++.++.+.|+||.+|++.+++.++||||++++++++++..+++++|+.+|.+++++
T Consensus 401 e~avRes~~~vki~-knfke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 401 EFAVRESNGNVKIF-KNFKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIA 479 (794)
T ss_pred eEEEEecCCceEEE-ecceeccccccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccceeEEecCCCEEEEE
Confidence 89999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEeccEEEEEccCCeEEEEECCeEeEEEecccc
Q 002881 482 SDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRP 561 (871)
Q Consensus 482 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 561 (871)
+++.++++.++++.+..+.+++..++++|++++|+.+.|..+.++++.|.+|+|+|++.+++++|+++++..++.+++.+
T Consensus 480 ~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~ 559 (794)
T KOG0276|consen 480 GDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRI 559 (794)
T ss_pred ecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhCCCCCcchhHHHHHHHHhCCChhhhhhcccC
Q 002881 562 MYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATD 641 (871)
Q Consensus 562 ~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~ 641 (871)
+|+++|+++++|+|+.|++.++.+|.+.+++++||++++++|++.|.+.+++|+.+++.++++|++++|+.++||+++.|
T Consensus 560 mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D 639 (794)
T KOG0276|consen 560 MYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTD 639 (794)
T ss_pred hhheeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHH
Q 002881 642 PDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAK 721 (871)
Q Consensus 642 ~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~ 721 (871)
|+++||+++++|+++.|+++|.+.+++.+|++||++|++.+++.+|.+||.+++|+.+|+++|+..|+.+++..++..+.
T Consensus 640 ~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 640 PDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHHhhhhChhhhhhcCCCccCC
Q 002881 722 EQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYS 796 (871)
Q Consensus 722 ~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~~~~~~~~~~~~L~~~~~~~a~~l~~~~~~~ 796 (871)
++|++|.||.++++.|++++|.+++++++|++||+.|||+|+|+++.+++.+|++.|.+.++|+|++|+||++|+
T Consensus 720 ~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv~~wk~~l~k~~~k~~~sladp~~~~ 794 (794)
T KOG0276|consen 720 KQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIVELWKEDLSKVSEKAAESLADPEEYS 794 (794)
T ss_pred hhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhhhhhhhhhhhccCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999884
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-84 Score=670.83 Aligned_cols=731 Identities=27% Similarity=0.521 Sum_probs=633.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
...++..+.+|..++|||..+|++++..+|.|++||++-+.++..|..|++||+.+.|+|++..+++|++|-.|+||+++
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+.+++.++.+|-+.|+.+.|++.-++|+++|+|.+|+||++.+. .+..++.+|.++|+|..|+| ....++++|.|.+|
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTV 159 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCC-ccceEEEecccceE
Confidence 99999999999999999999999999999999999999999998 88999999999999999999 78899999999999
Q ss_pred EEEECCCCC-----------------------------CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC
Q 002881 168 KIWNLGSPD-----------------------------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 168 ~i~d~~~~~-----------------------------~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
++||+.+-+ ..+.+.+|..+|+.++|+|.-. +|++|++|+.|++|.+..
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc--eEEecCCcceeeEEEecc
Confidence 999985311 1245679999999999998655 899999999999999875
Q ss_pred Cc--eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEE
Q 002881 219 KS--CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (871)
Q Consensus 219 ~~--~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~ 296 (871)
.+ .+.+.++|.++|+++-|+|..+++++.|+|++|++||+...+.+.++....++.|.++.+|..+.+++|.+.|.+.
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V 317 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV 317 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE
Confidence 44 3667789999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc---C
Q 002881 297 VKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---D 373 (871)
Q Consensus 297 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~---~ 373 (871)
+.+.+++|.+++..++ +++.....++.+++.... ......++..+.....+.+++++|....+.+|+ +
T Consensus 318 FkleRErpa~~v~~n~-LfYvkd~~i~~~d~~t~~--------d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n 388 (1202)
T KOG0292|consen 318 FKLERERPAYAVNGNG-LFYVKDRFIRSYDLRTQK--------DTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDN 388 (1202)
T ss_pred EEEcccCceEEEcCCE-EEEEccceEEeeeccccc--------cceeEeccCCCcccCCcceeeeccccCeEEEEeccCC
Confidence 9999999999998764 455567888888875421 112233444455556788999999998888884 6
Q ss_pred CcEEEEEeeccc-------ccCcCceeEEEEecCCcEEEEec-CCeEEEeecccccceeeecCccceeee--cCcEEEEE
Q 002881 374 GEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY--GGTLLAMC 443 (871)
Q Consensus 374 ~~~~i~~~~~~~-------~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~s~~~i~--~~~~La~~ 443 (871)
+.+.+|...... ....++.....|-..+++++... +..+.+-++..+..+.+....+.+.|+ |...|...
T Consensus 389 ~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~ 468 (1202)
T KOG0292|consen 389 GEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR 468 (1202)
T ss_pred CeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE
Confidence 777777654331 11223445667777777777766 566777666665555555554556666 44567777
Q ss_pred eCCeEEEEeccCCcEEEEEE-cceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeee
Q 002881 444 SNDFICFYDWAECRLIRRID-VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETN 522 (871)
Q Consensus 444 ~~~~v~~~d~~~~~~~~~~~-~~i~~i~~s~~~~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 522 (871)
+.+.|.+||++..+.+..+. ..++.+.||+|..++|..++..+.+...+.+ ....++| .
T Consensus 469 ~~~~v~lfdvQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~-------------------l~~sihE-t 528 (1202)
T KOG0292|consen 469 SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLE-------------------LLCSIHE-T 528 (1202)
T ss_pred cCCeEEEEEeecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchh-------------------heecchh-e
Confidence 78899999999999888888 4899999999999999999998887642222 1344555 6
Q ss_pred eEEEeeEEecc-EEEEEccCCeEEEEE-CCeEeEEEecccceEEEEEeeeCCEEEEEecCCceEEEEecchhHhHHHHHH
Q 002881 523 ERVRTGLWVGD-CFIYNNSSWRLNYCV-GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM 600 (871)
Q Consensus 523 ~~i~~~~w~~~-~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 600 (871)
.+|+++.|+++ +|||+|. +||.|.+ +|+.+.+.+++.|+|+.+. .++.+||+++++.+....++.....|+.++.
T Consensus 529 iriksgawde~gVfiYtT~-nHikYal~~GD~GIikTLd~~iyitkv--~gn~V~cl~rd~~~~~~~IDptEy~FKlALi 605 (1202)
T KOG0292|consen 529 IRIKSGAWDEDGVFIYTTL-NHIKYALENGDSGIIKTLDKPIYITKV--KGNKVFCLNRDGEIECLTIDPTEYRFKLALL 605 (1202)
T ss_pred eEeeeceeccCceEEEEeh-hhhhhhhccCCcceEEecccceEEEEe--eCCEEEEEecCCCeEEEeechHHHHHHHHHH
Confidence 79999999996 9999996 8999987 8999999999999999884 7999999999999999999999999999999
Q ss_pred ccCHHHHhhhCCCCCcchh--HHHHHHHHhCCChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCChHHHHHHHHHH
Q 002881 601 RGDLERANEILPSIPKEHH--NSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELA 678 (871)
Q Consensus 601 ~~~~~~a~~~l~~i~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w~~la~~a 678 (871)
++++++. ++.|++..+ ..++.||+++|+.+.||++..|+..+|++||+.|+++.|++.|+.++++..|+.||+.|
T Consensus 606 ~k~ydeV---l~lI~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~A 682 (1202)
T KOG0292|consen 606 NKKYDEV---LHLIKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEA 682 (1202)
T ss_pred hhhhHHH---HHHHHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999885 444555544 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHH
Q 002881 679 MSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALM 758 (871)
Q Consensus 679 l~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~l 758 (871)
+.+|+.++||.||.+.+++++|.+||..+|+.+++.+++++|+..++..--++.++++||+++-.+++...++.+.|..-
T Consensus 683 l~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylt 762 (1202)
T KOG0292|consen 683 LRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLT 762 (1202)
T ss_pred HHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHhhh
Q 002881 759 ARSYLPSKVSEIVAIWRKDLQK 780 (871)
Q Consensus 759 a~~~~~~~~~~~~~~~~~~L~~ 780 (871)
|.+|+.+..++ .+.+.+..
T Consensus 763 a~~~G~~~~ae---~l~ee~~~ 781 (1202)
T KOG0292|consen 763 AAAHGLEDQAE---KLGEELEK 781 (1202)
T ss_pred HhhcCcHHHHH---HHHHhhcc
Confidence 99999754333 34444443
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=3.9e-68 Score=558.87 Aligned_cols=433 Identities=59% Similarity=1.051 Sum_probs=357.5
Q ss_pred cceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCcCceeEEEEec
Q 002881 320 NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSS 399 (871)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~ 399 (871)
++++.+++..... +.||+.+++..++++.++.+|+.++++|+|++++|+++|++.||+...++++.+|....++|++
T Consensus 2 ~~i~~~~~~~~~~---~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~ 78 (443)
T PF04053_consen 2 NEIRTANLKNISE---IKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSS 78 (443)
T ss_dssp TEEEEEE--S--------TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-T
T ss_pred CceEEEECcCCCc---cCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEec
Confidence 4677777776544 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCeEEEeecccccce--eeecCccceeeecCcEEEEEeCCeEEEEeccCCcEEEEEEcc-eeEEEEcCCCC
Q 002881 400 DGEYAVRESSSKIKIFSKNFQEKR--SVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVT-VKNLYWADSGD 476 (871)
Q Consensus 400 ~~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~s~~~i~~~~~La~~~~~~v~~~d~~~~~~~~~~~~~-i~~i~~s~~~~ 476 (871)
+++|++..++++|.|+ .+++... .+..+++++.|++|.+|++.+++.|.||||++++.+++++.. |+.|.||++|+
T Consensus 79 ~n~yAv~~~~~~I~I~-kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIY-KNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGE 157 (443)
T ss_dssp SSEEEEE-TTS-EEEE-ETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSS
T ss_pred CccEEEEECCCeEEEE-EcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCC
Confidence 9999999999999997 5665554 667788999999999999999999999999999999999975 79999999999
Q ss_pred EEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEeccEEEEEccCCeEEEEECCeEeEEE
Q 002881 477 LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMF 556 (871)
Q Consensus 477 ~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~ 556 (871)
++|+.+++.++++.++.+.+.. .+++|.+++|+.++|+..+|++++|++|+|+|+|.+ +++|+++|+.+++.
T Consensus 158 ~val~t~~~i~il~~~~~~~~~-------~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge~~~i~ 229 (443)
T PF04053_consen 158 LVALVTKDSIYILKYNLEAVAA-------IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGETGIIA 229 (443)
T ss_dssp EEEEE-S-SEEEEEE-HHHHHH-------BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTEEEEEE
T ss_pred EEEEEeCCeEEEEEecchhccc-------ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCCcceEE
Confidence 9999999999999999987766 667899999999999999999999999999999985 99999999999999
Q ss_pred ecccceEEEEEeeeCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHH------HhhhCCCCCcchhHHHHHHHHhCC
Q 002881 557 HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLER------ANEILPSIPKEHHNSVARFLESRG 630 (871)
Q Consensus 557 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~------a~~~l~~i~~~~~~~~~~~~~~~~ 630 (871)
+++.|+|++++.++.+++|++|+++++.++.++..+++|+.+++++|++. +.++++.||.+.++++++||+++|
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G 309 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKG 309 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT
T ss_pred EcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred ChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH
Q 002881 631 MIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA 710 (871)
Q Consensus 631 ~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~ 710 (871)
+++.|+++++||++||++||++|+++.|+++|++++++.+|++||+.|+.+|++++|++||.+++|+++|++||...||.
T Consensus 310 ~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 310 YPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp -HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred CHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002881 711 EGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (871)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~ 764 (871)
+.++++++++...|+++.||++++++||+++|++++++++|+++|+.+||+|+|
T Consensus 390 ~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999987
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-48 Score=370.41 Aligned_cols=329 Identities=24% Similarity=0.368 Sum_probs=292.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
...+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|..-|.|++|+|||++||+|+.||+|++||.+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEE-EEEccCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 88 TMDKV-KVFEAHTDYIRCVAVHP-----TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 88 ~~~~~-~~~~~~~~~i~~i~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
+|+.+ ..+.+|...|++++|.| ..++|++++.||.++|||+..+ .+...+.+|+.+|+|+.|- +..++++|
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwG--G~gliySg 264 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWG--GEGLIYSG 264 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEc--CCceEEec
Confidence 98765 56889999999999987 4678999999999999999987 7888999999999999997 57899999
Q ss_pred ECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeec-----------CC-----------------------cCEEEEEeC
Q 002881 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-----------GD-----------------------KPYLITGSD 207 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-----------~~-----------------------~~~l~~~~~ 207 (871)
+.|++|++|+...+.....+++|...|+.++.+.+ +. ...+++|++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 99999999999999999999999999999988721 21 124999999
Q ss_pred CCeEEEEECCC-CceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeE
Q 002881 208 DHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRI 286 (871)
Q Consensus 208 dg~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 286 (871)
|.++.+|+... .+++..+.+|..-|..+.|+||+.+++++|.|..|++|+..+|+.+.++.+|...|+.++|+.|.++|
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 99999999764 55888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCC
Q 002881 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (871)
Q Consensus 287 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 366 (871)
++|+.|.++.+|.-.... ...++..+...+..+.|+|||+
T Consensus 425 VS~SkDsTLKvw~V~tkK----------------------------------------l~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKK----------------------------------------LKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred EEcCCCceEEEEEeeeee----------------------------------------ecccCCCCCceEEEEEecCCCc
Confidence 999999999998211110 1123566666778899999999
Q ss_pred EEEEEcCCc-EEEE
Q 002881 367 FVVVCGDGE-YIIY 379 (871)
Q Consensus 367 ~lav~~~~~-~~i~ 379 (871)
.++.++.++ +.+|
T Consensus 465 rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 465 RVASGGKDKVLRLW 478 (480)
T ss_pred eeecCCCceEEEee
Confidence 998888544 4444
No 5
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=3.5e-45 Score=370.71 Aligned_cols=665 Identities=14% Similarity=0.184 Sum_probs=462.1
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 96 (871)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|++.|.|++|+.||+.+++|+.|..|.+|+.+-...++ .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence 799999999999888876 5689999999999999999999999999999999999999999999999854322222 2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (871)
.|++.|.||.|+|-...|++|+-+ ..-+|+.+....... .....+.+++|.. ++.+++.|-.+|+|.+-+-. ++
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~---kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~-gE 164 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH---KSSSRIICCSWTN-DGQYLALGMFNGTISIRNKN-GE 164 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh---hhheeEEEeeecC-CCcEEEEeccCceEEeecCC-CC
Confidence 699999999999999999999875 567898775422221 2345688999998 89999999999999998754 34
Q ss_pred CeEEEe---cCCCCeeEEEEeecC---CcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECC
Q 002881 177 PNFTLD---AHQKGVNCVDYFTGG---DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED 250 (871)
Q Consensus 177 ~~~~~~---~~~~~i~~i~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d 250 (871)
+...+. +...+|.+++|+|.. ....+++...+.++.+|.+. |+.+..-+...-...|+++.|+|.+++.||.|
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCC
Confidence 443443 467899999999863 33478999999999999986 66665444455567899999999999999999
Q ss_pred CcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeec
Q 002881 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (871)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (871)
+.+++|. +.|-.+.++......||+++..|+++.+++|+.||++..+.-....+..++.+......+..++.+.+
T Consensus 244 k~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQh---- 318 (1081)
T KOG1538|consen 244 KQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQH---- 318 (1081)
T ss_pred CceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHH----
Confidence 9999997 66888888887888999999999999999999999999876666666666655444433333332222
Q ss_pred CcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCcC-----ce-eEEEEe---cCC
Q 002881 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFG-----SA-LEFVWS---SDG 401 (871)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~-----~~-~~~~~s---~~~ 401 (871)
+..++...+..+++ +..+++-. ..|||--..++.||.....+..... .+ ..+.+| -.+
T Consensus 319 -----Li~~qkvrIkC~DL------VkKiaiYr--nrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~ 385 (1081)
T KOG1538|consen 319 -----LITEQKVRIKCKDL------VKKIAIYR--NRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCA 385 (1081)
T ss_pred -----HhhcceeeeeHHHH------HHHHHhhh--hhheecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEc
Confidence 22344444444432 23344433 3378888888999987665433221 01 111111 234
Q ss_pred cEEEEecCCeEEEeecccccceeeec---------CccceeeecCcEEEEEeCC--eEEEE-eccCCcEEEEEEcceeEE
Q 002881 402 EYAVRESSSKIKIFSKNFQEKRSVRP---------TFSAERIYGGTLLAMCSND--FICFY-DWAECRLIRRIDVTVKNL 469 (871)
Q Consensus 402 ~~~~~~~~~~i~i~~~~~~~~~~~~~---------~~s~~~i~~~~~La~~~~~--~v~~~-d~~~~~~~~~~~~~i~~i 469 (871)
..++...+.++.-+|..+-....+.- .-.|- +..-|.++..+ ..++| |-.-.-++..-...|+++
T Consensus 386 ~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~---gREgL~vGlknGqV~kiF~dN~~PiLl~~~~tAvrCl 462 (1081)
T KOG1538|consen 386 NHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPP---GREGLLVGLKNGQVLKIFVDNLFPILLLKQATAVRCL 462 (1081)
T ss_pred CeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCC---CcceeEEEecCCcEEEEEecCCchhheecccceeEEe
Confidence 55666666677776644322222211 00111 24466677665 34444 333233344444689999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEec---cEEEEEccCCeEEE
Q 002881 470 YWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG---DCFIYNNSSWRLNY 546 (871)
Q Consensus 470 ~~s~~~~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~---~~~i~~~~~~~l~~ 546 (871)
..|.+.+.+|+.++...+.++. +..+ +.+.. .....++.|.. ++|.|++. |.++.
T Consensus 463 DINA~R~kLAvVDD~~~c~v~D--------I~t~------------elL~Q-Epg~nSV~wNT~~E~MlcfT~~-g~L~V 520 (1081)
T KOG1538|consen 463 DINASRKKLAVVDDNDTCLVYD--------IDTK------------ELLFQ-EPGANSVAWNTQCEDMLCFTGG-GYLNV 520 (1081)
T ss_pred eccCCcceEEEEccCCeEEEEE--------ccCC------------ceEee-cCCCceEEeeccccceEEEecC-CceEE
Confidence 9999999999999999988751 1110 11111 23455677774 89999887 76766
Q ss_pred EECCeEeEEEecccceEEEEEeeeCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhCCCCCcchhHHHHHHH
Q 002881 547 CVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFL 626 (871)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~ 626 (871)
-.+..... ..+..-+++|| ++++.+|+ +.|.+.. ++.++...+
T Consensus 521 R~~~~P~h--~qk~~G~VvG~--~gsk~FCL------~~~~i~~-----------------------~evp~~~~m---- 563 (1081)
T KOG1538|consen 521 RASTFPVH--RQKLQGFVVGY--NGSKIFCL------HVFSISA-----------------------VEVPQSAPM---- 563 (1081)
T ss_pred EeccCCcc--hhcceEEEEEe--cCceEEEE------Eeeeeec-----------------------ccccccccc----
Confidence 55433322 22334567776 57888885 2232210 111111111
Q ss_pred HhCCChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHh
Q 002881 627 ESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSS 706 (871)
Q Consensus 627 ~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~ 706 (871)
..+++.|.+++|+++++.......|+.||+.|++..+|++|.++|.|.+|...|.+
T Consensus 564 --------------------~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~l---- 619 (1081)
T KOG1538|consen 564 --------------------YQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLEL---- 619 (1081)
T ss_pred --------------------hhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHH----
Confidence 22357789999999999999999999999999999999999999999999998877
Q ss_pred cCCHHHHHHHHHHHHHcC--CchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC-chHHHHH----HHHHHHhh
Q 002881 707 LGDAEGISKLASLAKEQG--KNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP-SKVSEIV----AIWRKDLQ 779 (871)
Q Consensus 707 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~-~~~~~~~----~~~~~~L~ 779 (871)
+.++.+...... +..+-+..+.+.|+|.||+++|.++|+-++|+||..++.+ ..+++.+ .+-++.|.
T Consensus 620 ------i~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 620 ------ISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred ------HHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 444444443332 1222333444788888888888888888888888888766 3344444 45667777
Q ss_pred hhChhhhhhcCCCccCCCCccc
Q 002881 780 KVNPKAAESLADPEEYSNLFDD 801 (871)
Q Consensus 780 ~~~~~~a~~l~~~~~~~~~~~~ 801 (871)
.+...||..+.+|....+|.+.
T Consensus 694 RKRA~WAr~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 694 RKRADWARNIKEPKAAAEMLIS 715 (1081)
T ss_pred HHHHHHhhhcCCcHHHHHHhhc
Confidence 7777888888888777766653
No 6
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=100.00 E-value=5e-44 Score=354.23 Aligned_cols=686 Identities=16% Similarity=0.200 Sum_probs=464.2
Q ss_pred CCChhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEE-EEEEeC-------CCCEE
Q 002881 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR-SAKFVA-------RKQWV 72 (871)
Q Consensus 1 m~~~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~-------~~~~l 72 (871)
|.++..+.++- .|+..|.|+.|+.....+.++ .|..+.+|+--+..........+.-+. .+-.-+ ....+
T Consensus 1 mklk~~~~~k~-r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 1 MKLKTRICKKN-RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTL 78 (737)
T ss_pred Cccchhhhhcc-ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceE
Confidence 66777766665 588999999999988755555 566777766444433333322222111 111111 23578
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEec
Q 002881 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 73 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 152 (871)
+.++.||.+.+.+ +.++..+.+.+|.+.+.|-.|+|+|.-|+++++||.|++|.- ++ .+..++.....+|.|++|.|
T Consensus 79 ~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sG-MLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 79 LICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SG-MLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred EEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cc-hHHHHHhhcCceeEEEEECC
Confidence 9999999999998 567888888999999999999999999999999999999994 44 45566666778899999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCe
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV 232 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 232 (871)
++++.+++.+ +.+.|=.+.....+..++.|.+-|.++.|++..+ ++++|+.|-..++||-. |+.+.....|..+|
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred CCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc--ceeecCCceeEEeeccc-CcccccCChhccce
Confidence 7677776654 6788878877778889999999999999999877 89999999999999965 88888888999999
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCC
Q 002881 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSG 312 (871)
Q Consensus 233 ~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 312 (871)
++++|.|+ ..++.+|.+ ++|+=. ...+.|..++||+||..+++|+..|.+.+--.-+.... ..+.
T Consensus 231 TSva~npd-~~~~v~S~n-t~R~~~-----------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~--~~n~ 295 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TARFSS-----------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLV--SGNL 295 (737)
T ss_pred eeeeeccc-cceeeeeee-eeeecC-----------CCccceEEEEEcCCCceeeccccCceEEEeeeehhhhh--hccc
Confidence 99999999 677777753 565222 23367899999999999999999999877211111000 0112
Q ss_pred cEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCcCce
Q 002881 313 KIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA 392 (871)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~ 392 (871)
+........+.+-++.+ +.. ...+.+-..+.++..-.+|++.+..++++|....|+.......
T Consensus 296 ~~t~~~r~~I~vrdV~~---------~v~--------d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntpiiidg 358 (737)
T KOG1524|consen 296 KATSKSRKSITVRDVAT---------GVQ--------DILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTPIIIDG 358 (737)
T ss_pred eeEeeccceEEeehhhh---------hHH--------HHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCcEEEec
Confidence 22222222222222211 111 0111222455667777889999999999999888863321111
Q ss_pred eE--EEEecCC-cEEEEecCCeEEEeecccccceeeec------Cccceeee-cCcEEEEEeCC---eEEEEec-cCCcE
Q 002881 393 LE--FVWSSDG-EYAVRESSSKIKIFSKNFQEKRSVRP------TFSAERIY-GGTLLAMCSND---FICFYDW-AECRL 458 (871)
Q Consensus 393 ~~--~~~s~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~------~~s~~~i~-~~~~La~~~~~---~v~~~d~-~~~~~ 458 (871)
.. ......+ ++.......++.+|..+.+..-..+. ......+. +...|++.+.. .+++||. .+|+.
T Consensus 359 re~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~ 438 (737)
T KOG1524|consen 359 REDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKR 438 (737)
T ss_pred cccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcc
Confidence 00 0000112 34444445567777644433222211 11111112 46678887644 8899998 77765
Q ss_pred EE-----EEEcceeEEEEc----CCCCEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeE
Q 002881 459 IR-----RIDVTVKNLYWA----DSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGL 529 (871)
Q Consensus 459 ~~-----~~~~~i~~i~~s----~~~~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~ 529 (871)
.. +++..|..++.+ ++.+.+++.+.++.+++-..+ .+.. + +.+..++..+.+..
T Consensus 439 qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvK-----rfgk---------e---e~I~KiGTmVhtLa 501 (737)
T KOG1524|consen 439 QGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVK-----RFGK---------E---EEIYKIGTMVHTLA 501 (737)
T ss_pred cCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeeh-----hcCc---------h---hhhhhhhhhhhhhh
Confidence 43 122345555555 567889999999888874111 1111 1 12233456666666
Q ss_pred Eec--cEEEEEccCCe--EEEEECCeEe---EE---------EecccceEEEEEeeeCCEEEEEecCCceEEEEecchhH
Q 002881 530 WVG--DCFIYNNSSWR--LNYCVGGEVT---TM---------FHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLI 593 (871)
Q Consensus 530 w~~--~~~i~~~~~~~--l~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~ 593 (871)
|.+ ++++--.+ +. +.||.+.-.. .+ .++.....+..+ .++.+.+.-.+|.+.-. .+.
T Consensus 502 wndttNiLcglqD-t~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsF--vgNqvtirrsdG~Llpi----sV~ 574 (737)
T KOG1524|consen 502 WNDTTNILCGLQD-TCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSF--VGNQVTIRRSDGALLPI----SVN 574 (737)
T ss_pred hccccceeeeecc-ceEEEEEcCCcceecccccchhheecchhhccCCcceeee--eccEEEEEeccCceEee----ecc
Confidence 665 33332222 22 2222211100 00 011111222222 13444443344433221 122
Q ss_pred hHHHHHHccCHHHHhhhCCCCCcchhHHHHHHHHhCCChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCChHHHHH
Q 002881 594 EYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQ 673 (871)
Q Consensus 594 ~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w~~ 673 (871)
.|...+ -+ ++..++|++|.++||...+..+|..
T Consensus 575 py~~iL---------------------------------~e--------------~~sssKWeqavRLCrfv~eqTMWAt 607 (737)
T KOG1524|consen 575 PYPEIL---------------------------------HE--------------YLSSSKWEQAVRLCRFVQEQTMWAT 607 (737)
T ss_pred ccHHHH---------------------------------HH--------------HhccchHHHHHHHHHhccchHHHHH
Confidence 222111 00 1256799999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCch
Q 002881 674 LGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIP 753 (871)
Q Consensus 674 la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~ 753 (871)
||.+|+...++.++|.+|..+++.+++.++.......+.-.++|+.....|+..+|..+++..|...+|+.+.+++..|.
T Consensus 608 lAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~ 687 (737)
T KOG1524|consen 608 LAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWR 687 (737)
T ss_pred HHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHhhhhChhhhhhcCCCccCCCCcccHHHHHHHh
Q 002881 754 EAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVE 809 (871)
Q Consensus 754 ~A~~la~~~~~~~~~~~~~~~~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 809 (871)
+|+|++.+|. +.++.+++..+++|+..+++ |...+|..|...+|++
T Consensus 688 RALEl~~K~K-~~v~~Vl~yR~KyLk~~g~~---------EtdplyL~~~~~~eiD 733 (737)
T KOG1524|consen 688 RALELSQKHK-ELVPRVLQYRRKYLKALGRE---------ETDPLYLPLVAKEEID 733 (737)
T ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHHhccc---------ccCchhhhhhhhcccc
Confidence 9999999997 57899999999999877777 8888998887766654
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-41 Score=336.31 Aligned_cols=458 Identities=21% Similarity=0.329 Sum_probs=361.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeCCCCEEEEEeC--CCeEEE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIRV 83 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i 83 (871)
...+++|+..++-..|||.|.|+|+|...|+|+|||....+ +..+++...++|..++|++++++|++.++ +...++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 45678899999999999999999999999999999976533 33467778899999999999999998766 334444
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
+-+++|..+..+.+|+..|.+++|-|..+ ++++|++|+.|.+|.-.-- +....+..|...|.|+.|+| ++..|++++
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-KFk~s~r~HskFV~~VRysP-DG~~Fat~g 209 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-KFKSSFREHSKFVNCVRYSP-DGSRFATAG 209 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-eeeecccccccceeeEEECC-CCCeEEEec
Confidence 44557888899999999999999999877 5889999999999986543 66677888999999999999 899999999
Q ss_pred CCCcEEEEECCCCCCeEEEe---cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE----------------
Q 002881 163 LDRTIKIWNLGSPDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ---------------- 223 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---------------- 223 (871)
.||+|.+||-.+++.+..+. +|++.|..++|+|++. .+++++.|.++++||..+.+++.
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 99999999999999998887 8999999999999998 59999999999999987654333
Q ss_pred ---------------------------EecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-ecCCccEE
Q 002881 224 ---------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-NYGLERVW 275 (871)
Q Consensus 224 ---------------------------~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~ 275 (871)
.+.+|...|+++..+|++.+|++|+.||.|.-|+..++..-... ..|...|.
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~ 367 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK 367 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence 34589999999999999999999999999999999888755443 56777888
Q ss_pred EEEEeeCCCeEEEEEcCCeEEE-------------ecCCCcceEEEeCCC-cEEEEeecceEEEEEeecCcceeccCCCe
Q 002881 276 AIGYMKSSRRIVIGYDEGTIMV-------------KIGREEPVASMDNSG-KIIWAKHNEIQTVNIKSVGADYEVTDGER 341 (871)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg~i~i-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (871)
+++.+..+.++.+|.+|..-++ .++.++...+...++ .++.....++.+++-.. .
T Consensus 368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~-----------~ 436 (603)
T KOG0318|consen 368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT-----------K 436 (603)
T ss_pred EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC-----------c
Confidence 8888776666655555544333 234445555555543 44555555555443111 0
Q ss_pred eeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-------ccCcCceeEEEEecCCcEEEEec-CCeE
Q 002881 342 LPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSKI 412 (871)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~-------~~~~~~~~~~~~s~~~~~~~~~~-~~~i 412 (871)
.. .......+.+++++|+++.+|+++ |+.+++|++.... ..+.+.++.+++|||+.|++.+. .+++
T Consensus 437 ~~-----~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 437 VS-----SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred ce-----eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 00 011234667999999999999999 8999999887643 35678899999999999999888 7899
Q ss_pred EEeecccccceeeec----------CccceeeecCcEEEEEeCC-eEEEEeccCCcEEEEEE----cceeEEEEcCCCCE
Q 002881 413 KIFSKNFQEKRSVRP----------TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID----VTVKNLYWADSGDL 477 (871)
Q Consensus 413 ~i~~~~~~~~~~~~~----------~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~~~~~----~~i~~i~~s~~~~~ 477 (871)
.+|+.+.++...... +++|+ ..+||+++-| .|.+|+++.......+. ..|+.+.|-.+.+
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t- 586 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST- 586 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCce-
Confidence 999977655433222 56776 8999999999 99999998765443333 4799999988866
Q ss_pred EEEEeCCeEEEEE
Q 002881 478 VAIASDTSFYILK 490 (871)
Q Consensus 478 la~~~~~~~~~l~ 490 (871)
|+..+.|..+.+|
T Consensus 587 vvSsG~Da~iK~W 599 (603)
T KOG0318|consen 587 VVSSGQDANIKVW 599 (603)
T ss_pred EEeccCcceeEEe
Confidence 6666677666655
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-43 Score=335.56 Aligned_cols=323 Identities=21% Similarity=0.357 Sum_probs=281.3
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~ 129 (871)
...+.+|..+|.|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||.|++||.+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCCcceEEEEEec----CCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEE
Q 002881 130 KGWMCTQIFEGHSHYVMQVTFNP----KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
++......+.+|...|++++|.| .....|++++.||.|+|||+..++.+..+.+|..+|+|+.|- |++ +|++|
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~g-liySg 264 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEG-LIYSG 264 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCc-eEEec
Confidence 99889999999999999999987 256789999999999999999999999999999999999994 333 89999
Q ss_pred eCCCeEEEEECCCCceEEEecCcccCeEEEEEc-----------CCCC-------------------------EEEEEEC
Q 002881 206 SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----------PELP-------------------------IIITGSE 249 (871)
Q Consensus 206 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~-----------p~~~-------------------------~l~~~~~ 249 (871)
+.|++|++|+...|.+...+++|...|+.++.+ |.+. .+++|+.
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999876 2232 4999999
Q ss_pred CCcEEEEeCCCC-eEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEe
Q 002881 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIK 328 (871)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (871)
|.++.+|+.... +++....+|..-|..+.||||++++|+++-|..|++|.+... +.+..
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~las----------- 404 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLAS----------- 404 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhh-----------
Confidence 999999986543 467778889899999999999999999999999999965432 22211
Q ss_pred ecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCcCceeEEEEecCCc
Q 002881 329 SVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGE 402 (871)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~ 402 (871)
+..+-..+..++|+.|.++|+.|+ |.++.+|+++..+ +.+...+.++.|+|||.
T Consensus 405 --------------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 405 --------------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred --------------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence 111222445799999999999998 8899999887654 34567889999999999
Q ss_pred EEEEec-CCeEEEe
Q 002881 403 YAVRES-SSKIKIF 415 (871)
Q Consensus 403 ~~~~~~-~~~i~i~ 415 (871)
.++.+. +..+++|
T Consensus 465 rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 465 RVASGGKDKVLRLW 478 (480)
T ss_pred eeecCCCceEEEee
Confidence 888877 6668887
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=334.92 Aligned_cols=458 Identities=18% Similarity=0.317 Sum_probs=374.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC--------ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
...+|.|+.|||+|+++|+|. .+.+.||..... .+.+++.+|...|+++.|+.|.++|++|+.|..+++|.
T Consensus 95 fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred ecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 357899999999999998886 668999986432 34566778889999999999999999999999999999
Q ss_pred CCCCcE--EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------------------------Cc-------
Q 002881 86 YNTMDK--VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK------------------------GW------- 132 (871)
Q Consensus 86 ~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~------------------------~~------- 132 (871)
++..+. ...+.+|.++|...-|..+...+++.+.||.+.+|.... ..
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~ 253 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFW 253 (893)
T ss_pred eccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEE
Confidence 987665 566789999999999999999999999999999998761 10
Q ss_pred e-E-EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC-C
Q 002881 133 M-C-TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD-H 209 (871)
Q Consensus 133 ~-~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d-g 209 (871)
. . +..+......|++.+|++ ..+.+++|-..|...+|.+.....+..+.-...+|..+.|+..|+ .|+.|+.. |
T Consensus 254 ~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD--WiA~g~~klg 330 (893)
T KOG0291|consen 254 YKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD--WIAFGCSKLG 330 (893)
T ss_pred EEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC--EEEEcCCccc
Confidence 0 0 111223347799999999 899999999999999999999999999998889999999998888 78888765 8
Q ss_pred eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEE
Q 002881 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 210 ~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g 289 (871)
++.||+.++...+...++|...+++++++|||+++++|++||.|++||..++-+..++..|...|+.+.|+..|+.+++.
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCeEEEecCCC----------cc----eEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccC
Q 002881 290 YDEGTIMVKIGRE----------EP----VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLY 355 (871)
Q Consensus 290 ~~dg~i~i~~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (871)
+-||+++.|.... .| -.+.++.|.++.+...+..-+-+|+ +++|+.+- -+..++.+
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS------~qTGqllD----iLsGHEgP 480 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS------VQTGQLLD----ILSGHEGP 480 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE------eecCeeee----hhcCCCCc
Confidence 9999999985321 12 3456778999888777766666555 56676543 35788999
Q ss_pred CceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCcCceeEEEEecCCcEEEEec-CCeEEEeeccccc-------
Q 002881 356 PQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE------- 421 (871)
Q Consensus 356 ~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~------- 421 (871)
+..++|+|+|..|+.++ |.++.+|++.... ......++.+.|.|+|+-+++.+ +|.|.+||.+...
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 99999999999999999 9999999876542 23345678999999998777766 8999999933110
Q ss_pred ---------------------ceeeec-CccceeeecCcEEEEEe-CCeEEEEeccCCcEEEEEE---------------
Q 002881 422 ---------------------KRSVRP-TFSAERIYGGTLLAMCS-NDFICFYDWAECRLIRRID--------------- 463 (871)
Q Consensus 422 ---------------------~~~~~~-~~s~~~i~~~~~La~~~-~~~v~~~d~~~~~~~~~~~--------------- 463 (871)
.+.+.. .+++| |..+.+++ ++.|++||+.++-++++++
T Consensus 561 rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD----G~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln 636 (893)
T KOG0291|consen 561 RKDLSGGRKETDRITAENSAKGKTFTTICYSAD----GKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLN 636 (893)
T ss_pred hhhccccccccceeehhhcccCCceEEEEEcCC----CCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhc
Confidence 001111 45555 65555544 5599999998776555331
Q ss_pred --------------------------------------------cceeEEEEcCCCCEEEEEeCCeEEEE
Q 002881 464 --------------------------------------------VTVKNLYWADSGDLVAIASDTSFYIL 489 (871)
Q Consensus 464 --------------------------------------------~~i~~i~~s~~~~~la~~~~~~~~~l 489 (871)
..|.++.++|+|+.+|+++..|.+++
T Consensus 637 ~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IY 706 (893)
T KOG0291|consen 637 RRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIY 706 (893)
T ss_pred cccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEE
Confidence 13567999999999999999998885
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-43 Score=341.20 Aligned_cols=283 Identities=25% Similarity=0.365 Sum_probs=271.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCc
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR--KQWVVAGADDMFIRVYNYNTMD 90 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~ 90 (871)
|-+.+|..+.||+|+..|+||+-+|.++||+..+...+.++.+|...|.++.|+|. +..+++|+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56779999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 91 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
++..+.+|...|..++|+|+|++|+|++.|.+-++||++++ .......+|...|.+++|+| ++.++++|+.|..-+||
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVW 330 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-hhhHhhcccccccceeEecC-CCceeeccCccchhhee
Confidence 99999999999999999999999999999999999999998 55566789999999999999 89999999999999999
Q ss_pred ECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC-CCCEEEEEEC
Q 002881 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIIITGSE 249 (871)
Q Consensus 171 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~~~ 249 (871)
|++++.++..+.+|..+|..+.|+|+|- .+++|+.|++++|||++..+++.++.+|.+-|+.++|+| .|.+|+|+|.
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy--~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGY--HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCce--EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 9999999999999999999999999997 699999999999999999999999999999999999999 7789999999
Q ss_pred CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
|++++||...++.++.++.+|.+.|.++..+++++.+++++.|.++.+|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999983
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=312.68 Aligned_cols=291 Identities=23% Similarity=0.424 Sum_probs=272.4
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
+++.+++|+||.+.|.++.|++|++++++++.||.+.|||.-+...++.++....-|..++|+|.|+++|+|+-|+...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 34566899999999999999999999999999999999999998888888888889999999999999999999999999
Q ss_pred EECCCC------cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCE
Q 002881 84 YNYNTM------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 84 w~~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
|++.+. ...+.+.+|.+.+.|+.|-+| ..|++++.|.+..+||++++ +..+.+.+|.+.|++++++|.+++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCe
Confidence 999865 345678899999999999985 47999999999999999999 7888999999999999999988999
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC--cccCeEEE
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAV 235 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~i 235 (871)
|++|+.|+..++||++.+...+.+.+|...|+++.|+|+|. -+++|++|++.++||++..+.+..+.. ...+|+++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCC--eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 99999999999999999999999999999999999999998 599999999999999999888777763 34579999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 236 ~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+|+..|++|++|..|.++.+||.-.++....+.+|.++|.++..+|||.-+++|+-|..+++|
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-37 Score=308.10 Aligned_cols=452 Identities=19% Similarity=0.238 Sum_probs=347.4
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEE
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK--VKV 94 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~ 94 (871)
.-.-+.-.|.|..++-.. ...|.+-++++......+..|..+++-..|+|.|-++++|...|+|+||+....+. ...
T Consensus 20 ~~~~ig~dpkgd~ilY~n-Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKne 98 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTN-GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNE 98 (603)
T ss_pred cceEeccCCCCCeEEEeC-CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeee
Confidence 445566778887766653 56799999999999999999999999999999999999999999999999865333 245
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 95 FEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
++...++|..|+|++++++|+..++. |.+.+||--+ ..-.+.+|...|.+++|-|..+-.+++|+.|++|.+|
T Consensus 99 f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~---SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff 175 (603)
T KOG0318|consen 99 FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN---SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF 175 (603)
T ss_pred eeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC---ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEe
Confidence 66778999999999999999887763 5566776443 3566789999999999999888899999999999999
Q ss_pred ECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec---CcccCeEEEEEcCCCCEEEEE
Q 002881 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE---GHTHNVSAVCFHPELPIIITG 247 (871)
Q Consensus 171 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~i~~~p~~~~l~~~ 247 (871)
+-...+...++..|..-|+|+.|+|+|. .+++.+.||++.+||-.+++.+..+. +|.+.|.+++|+||+..++++
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~--~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGS--RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCC--eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe
Confidence 9766666677788999999999999988 79999999999999999999998887 899999999999999999999
Q ss_pred ECCCcEEEEeCCCCeEEE-------------------------------------------EEecCCccEEEEEEeeCCC
Q 002881 248 SEDGTVRIWHATTYRLEN-------------------------------------------TLNYGLERVWAIGYMKSSR 284 (871)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~-------------------------------------------~~~~~~~~i~~i~~~~~~~ 284 (871)
|.|.+++|||..+.+++. .+.+|...|++++.+|+++
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~ 333 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK 333 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC
Confidence 999999999987654332 2345567789999999999
Q ss_pred eEEEEEcCCeEEEecCCCcc------------eEEEeCC--CcEEE-EeecceEEEEEeecCcceeccCCCeeeeeeeec
Q 002881 285 RIVIGYDEGTIMVKIGREEP------------VASMDNS--GKIIW-AKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349 (871)
Q Consensus 285 ~l~~g~~dg~i~i~~~~~~~------------~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (871)
+|.+|+.||.|.-|...... +..+... +.++- .-...++++.+.. +..-....
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~---------~~~t~~~~--- 401 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD---------NGYTKSEV--- 401 (603)
T ss_pred EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc---------Ccccccce---
Confidence 99999999999999543322 2222211 11111 1122233332211 11000000
Q ss_pred CccccCCceEEECCCCCEEEEEcCCcEEEEEeecc-c-ccCcCceeEEEEecCCcEEEEec-CCeEEEeecccccceee-
Q 002881 350 GTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAW-R-NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSV- 425 (871)
Q Consensus 350 ~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~-~-~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~~~~~- 425 (871)
-.....|..++..++|..+++.....+.++.-... . ....-...+++.+|++.+++.+. +++|+||.++..+....
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~ 481 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA 481 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee
Confidence 11123566899999998888888888888753221 1 11223457889999999887777 89999998776432111
Q ss_pred ---------e-cCccceeeecCcEEEEEeCC-eEEEEeccCCcEEE----EEEcceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 426 ---------R-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIR----RIDVTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 426 ---------~-~~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~~----~~~~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
. ..+||+ +.+||+++.. .+.+||+.+.+... -+...|.+++|||+.+++|+++-|..+++|
T Consensus 482 ~~~~h~a~iT~vaySpd----~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPD----GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred eeecccCCceEEEECCC----CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 1 168888 9999999988 99999999887632 234689999999999999999999888887
No 13
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=329.38 Aligned_cols=433 Identities=19% Similarity=0.299 Sum_probs=356.2
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
..|+|+.-+|+..+||+|..||.|+||+..++....++.+|+..|+++.|...|..|++||.|+.|.+||+-...-...+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999887888889
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 96 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
.+|++.|+.+-|..+.+++++++.|+.|++||+++. .+..+...|.+.++.+++.+ +.+++++.|+.+++|++...
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccc-eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecc
Confidence 999999999999998899999999999999999998 88888889999999999985 78999999999999998100
Q ss_pred ------------------------CC------------------------------------------------------
Q 002881 176 ------------------------DP------------------------------------------------------ 177 (871)
Q Consensus 176 ------------------------~~------------------------------------------------------ 177 (871)
+.
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 00
Q ss_pred ----------------------------------------------------------------eEEEecCCCCeeEEEE
Q 002881 178 ----------------------------------------------------------------NFTLDAHQKGVNCVDY 193 (871)
Q Consensus 178 ----------------------------------------------------------------~~~~~~~~~~i~~i~~ 193 (871)
...+.+|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0112345555666676
Q ss_pred eecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCcc
Q 002881 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER 273 (871)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 273 (871)
+.+.. ++..+..+.+++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+.+..++.+++.|.+.
T Consensus 382 S~d~~---~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdga 456 (888)
T KOG0306|consen 382 SSDSI---LLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGA 456 (888)
T ss_pred ecCce---eeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccc
Confidence 65543 45555578999999999999999973 47899999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEe-ecceEEEEEeecCcceeccCCCeeeeeeeecCcc
Q 002881 274 VWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAK-HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC 352 (871)
Q Consensus 274 i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (871)
+|+++.+||+..+++|+.|.++.+|... ++... ..+-+++.+.. .. .+ ..
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~------------l~~~~~gt~~k~lsl~~---------~r--tL------el 507 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFK------------LVVSVPGTQKKVLSLKH---------TR--TL------EL 507 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEE------------EEeccCcccceeeeecc---------ce--EE------ec
Confidence 9999999999999999999999999321 11110 00001111100 00 01 11
Q ss_pred ccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCcCceeEEEEecCCcEEEEec-CCeEEEeecccccc-ee
Q 002881 353 DLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEK-RS 424 (871)
Q Consensus 353 ~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~~-~~ 424 (871)
+..+.++++||||++||++- |+++.+|.....+ -.|..++.++..|||++.+++++ |..|++|-++|..- ++
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh
Confidence 22456899999999999998 9999999776654 34567899999999999999988 89999999888642 22
Q ss_pred eec--------CccceeeecCcEEEEEeCC-eEEEEeccCCcEEEEEE---cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 425 VRP--------TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 425 ~~~--------~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~~~~~---~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
+.. .|-|+ ..+..+++.+ .|+.||-+.-+.+..++ ..|++++.+|+|.++++++.|..+.+|
T Consensus 588 ~fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hhcccCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 222 34554 6677777777 99999998888888777 489999999999999999999999888
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-38 Score=292.36 Aligned_cols=294 Identities=21% Similarity=0.347 Sum_probs=259.2
Q ss_pred CCChhhhhhhcccCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCC-----CceeEEeeecCCCEEEEEEeCCCCEEEE
Q 002881 1 MPLRLEIKRKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQS-----QTMAKSFEVTELPVRSAKFVARKQWVVA 74 (871)
Q Consensus 1 m~~~~~~~~~~~~h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 74 (871)
|+-.+.+.-++++|++.|+.++..+.++ .+++++.|.++.+|++.. |..++.+.+|...|..+..++||++.++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 5566777889999999999999999754 677788899999998753 6788999999999999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002881 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (871)
++.|+++++||+.+++..+.|.+|...|.+++|+|+.+.+++|+.|.+|++|+..+.......-..+...|.|+.|+|+.
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999987733333333347899999999943
Q ss_pred -CCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeE
Q 002881 155 -TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (871)
Q Consensus 155 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 233 (871)
+.++++++.|++|++||+++.+....+.+|.+.++.+.++|+|. +.++|+.||.+.+||++.++.+.++. +...|.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs--lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS--LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVN 237 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC--EEecCCCCceEEEEEccCCceeEecc-CCCeEe
Confidence 67899999999999999999998899999999999999999998 79999999999999999999988887 788999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC---------CccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG---------LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 234 ~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---------~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+++|+|+...|+.+. +..|+|||+.++..+..+... .....+++|++||+.|..|..|+.|++|
T Consensus 238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred eEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 999999986666665 457999999988876655432 2345678999999999999999999998
No 15
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.6e-38 Score=320.46 Aligned_cols=710 Identities=12% Similarity=0.127 Sum_probs=437.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC---------------ceeEEeeecCCCEEEEEEeCCCCEEEEEeCC
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---------------TMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 78 (871)
......|++|+....++|+|+.||.++|..+.+. ...+++.+|+..|.-+.|+.+.+.|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4457899999999999999999999999987653 2346778999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC
Q 002881 79 MFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 156 (871)
|.|.||-+-.|.....+ ....+.|.+|+|+.+|..++....||.|.+-.++.++.....+.+. ....+.|++ +..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~-D~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSE-DLE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecc-cHH
Confidence 99999998877654433 2345679999999999999999999999999988774444444332 245788999 777
Q ss_pred EEEEEECCCcEEEEECCCCC-------Ce----EEEecCCCCeeEEEEeec------CCcCEEEEEeCCCeEEEEECCCC
Q 002881 157 TFASASLDRTIKIWNLGSPD-------PN----FTLDAHQKGVNCVDYFTG------GDKPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~-------~~----~~~~~~~~~i~~i~~~~~------~~~~~l~~~~~dg~i~v~d~~~~ 219 (871)
.++.+-.+|.+.+||....- +. ..+......|..+.|... ++.|.++++..+|.+.+..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 88888889999999976431 10 112223344667777643 25568999999999999875544
Q ss_pred ceEEEecCcccCeEEEEEcCCCCEEEEEECCC---------cEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---------TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 220 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg---------~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
.....+. ..-.+..+.|+++|..|+++|.+. .|.+|. .-|..+.+++.+...|++++|-..|-.+|.+-
T Consensus 250 ~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 250 PEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 3333333 235688999999999999998642 577776 45788889999989999999998888888775
Q ss_pred cCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEE
Q 002881 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (871)
Q Consensus 291 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav 370 (871)
+ +.+.+-.-+ | ...|..-.+..++.... .+-....+.+++..+.+.++..+.
T Consensus 328 d-sfiyfanIR--------P--~ykWgy~e~TvVy~y~~-------~e~p~y~i~Fwdtk~nek~vK~V~---------- 379 (1189)
T KOG2041|consen 328 D-SFIYFANIR--------P--EYKWGYIEETVVYVYQK-------EELPQYGIMFWDTKTNEKTVKTVT---------- 379 (1189)
T ss_pred c-ceEEEEeec--------c--cceEEEeeeEEEEEEcc-------CCCcceEEEEEecccChhhhhhhc----------
Confidence 4 445442111 1 22232222222211100 000011111222111111111111
Q ss_pred EcCCcEEEEEeecccccCcCceeEEEEecCCcEEEEec-CCeEEEeecccccceeeecCccceeeecCcEEEEEeCCeEE
Q 002881 371 CGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFIC 449 (871)
Q Consensus 371 ~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~s~~~i~~~~~La~~~~~~v~ 449 (871)
...++++..+--.++... ++.+.-++ ... .++.. .+|..+.
T Consensus 380 --------------------~~~~~a~~~ehCvL~~~~d~~~i~e~s-~le-------~~~~~-----~~l~LCN----- 421 (1189)
T KOG2041|consen 380 --------------------HFENMAFYREHCVLINRQDDGVIPEYS-TLE-------NRSRV-----YFLQLCN----- 421 (1189)
T ss_pred --------------------ceeehheecccEEEEeccccCCCcchh-hhh-------cccce-----EEEeeec-----
Confidence 011111111111111111 11111110 000 00000 0000000
Q ss_pred EEeccCCcEEEEEEcceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHhhhhC------CC---CCCccc----cccc-e
Q 002881 450 FYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDS------GK---PVDEQG----VEDA-F 515 (871)
Q Consensus 450 ~~d~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~~~~~~l~~~~~~~~~~~~~------~~---~~~~~~----~~~~-f 515 (871)
+-|..+..--..|.-....-++.++++++++.+++|.|..+.....+.. +. ....+| .... -
T Consensus 422 ----SIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~ 497 (1189)
T KOG2041|consen 422 ----SIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYST 497 (1189)
T ss_pred ----ccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccc
Confidence 0000000000011111111233344444444444444433222221111 00 000011 1000 1
Q ss_pred eeeeeeeeEEEeeEEeccEEEEEccCCeEEEEECCeEeEEEecc--cceEEEEEeeeCCEEEEEecCCceEEEEecc---
Q 002881 516 ELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLD--RPMYLLGYLASQSRVYLIDKEFNVMGYTLLL--- 590 (871)
Q Consensus 516 ~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~--- 590 (871)
..+..+.+.|...+..+.+|+....+|.++-|...++.....++ ...|.+.+.++.+|+.++|-.|.+..+.++.
T Consensus 498 kt~~G~~DpICAl~~sdk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~ 577 (1189)
T KOG2041|consen 498 KTLLGSKDPICALCISDKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFD 577 (1189)
T ss_pred eeeccCCCcceeeeecceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccC
Confidence 22233466778888888999999999999887766666666554 5677888889999999999999888877753
Q ss_pred -hhHhHHHHHHccCHHHHhhhCCCCCcchhHHHHHHHHhCCC------------------------------hhhhhhcc
Q 002881 591 -SLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGM------------------------------IEEAIEVA 639 (871)
Q Consensus 591 -~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~------------------------------~~~a~~~~ 639 (871)
..+..-..+.++|+|+-.=.-.+ ..+..+.+|+.+ .++-+...
T Consensus 578 g~ql~~~~~~errDVWd~~Wa~dN------p~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~Il~~p 651 (1189)
T KOG2041|consen 578 GDQLKLIYTSERRDVWDYEWAQDN------PNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKILLTP 651 (1189)
T ss_pred cceeeeeehhhhhhhhhhhhccCC------chHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhHhcCc
Confidence 11221234568899972100000 111112222100 11111111
Q ss_pred cCcccc--ee----------eeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhc
Q 002881 640 TDPDYR--FE----------LAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSL 707 (871)
Q Consensus 640 ~~~~~~--f~----------~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~ 707 (871)
..|... .+ -.++...+++|.+++...++|++|+.||+.|+.+.+++.||.+|.|++||.++.+
T Consensus 652 E~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~----- 726 (1189)
T KOG2041|consen 652 ENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL----- 726 (1189)
T ss_pred CCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-----
Confidence 111111 11 1245667899999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHH---Hh-hhhCh
Q 002881 708 GDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRK---DL-QKVNP 783 (871)
Q Consensus 708 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~~~~~~~~~~~---~L-~~~~~ 783 (871)
+++|..+..+ -...+++..+.|+|+||+++|++++|.+.|++|+++++.+. +++++++. .- .+...
T Consensus 727 -----vkrl~~i~s~---~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwf--rV~qL~r~g~~d~dD~~~e 796 (1189)
T KOG2041|consen 727 -----VKRLRTIHSK---EQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWF--RVYQLIRNGGSDDDDEGKE 796 (1189)
T ss_pred -----HHHhhhhhhH---HHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHH--HHHHHHHccCCCcchHHHH
Confidence 5666555544 23334455589999999999999999999999999999875 77777774 11 12233
Q ss_pred hhhhhcCCCccCCCCcccHHHHHHHhHHHhhccCCCCCCccc
Q 002881 784 KAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 825 (871)
Q Consensus 784 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 825 (871)
.+.+.++ ++ |.+..+|.++.++|...+.....+++|
T Consensus 797 ~A~r~ig---~~---fa~~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 797 DAFRNIG---ET---FAEMMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred HHHHHHH---HH---HHHHHHHHHHHHHHHhccchHhHHHHH
Confidence 4555565 56 899999999999999988888888777
No 16
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-36 Score=303.19 Aligned_cols=623 Identities=20% Similarity=0.275 Sum_probs=399.8
Q ss_pred EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002881 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (871)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~ 130 (871)
+.+..+..+|.++.++|..++++++-.+|.|.|||.++...++.+.-..-+|+...|-+-.+.+++|++|+.|++|+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34555788999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC
Q 002881 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
. .....+..|...|.+++.+| ...+++++|.|-+|++||.+.. .+.+++++|..-|.+++|+|...+ .+++++-|+
T Consensus 87 ~-ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n-tFaS~sLDr 163 (794)
T KOG0276|consen 87 G-EKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN-TFASASLDR 163 (794)
T ss_pred c-eeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc-ceeeeeccc
Confidence 8 67788999999999999999 6779999999999999999764 567889999999999999998655 899999999
Q ss_pred eEEEEECCCCceEEEecCcccCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEE
Q 002881 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL--PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (871)
Q Consensus 210 ~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 287 (871)
+|++|++.+..+..++.+|...|.++++-|.| +++++|+.|.+++|||..+..+++++.+|...|..+.|+|.-+.++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 99999999999999999999999999998855 6999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEecCCCcc-----------eEEE---eCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccc
Q 002881 288 IGYDEGTIMVKIGREEP-----------VASM---DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (871)
Q Consensus 288 ~g~~dg~i~i~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (871)
+|++||++++|....-. +..+ ..++++.........++.+ |+
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l-----------gr------------- 299 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL-----------GR------------- 299 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc-----------cC-------------
Confidence 99999999999554322 1111 1222222222222222221 11
Q ss_pred cCCceEEECCCCCEEEEEcCCcEE---EEEeecc-----------cccCcCce----eEEEEecCCcEEEEecCCeEEEe
Q 002881 354 LYPQSLKHNPNGRFVVVCGDGEYI---IYTALAW-----------RNRSFGSA----LEFVWSSDGEYAVRESSSKIKIF 415 (871)
Q Consensus 354 ~~~~~~~~s~~g~~lav~~~~~~~---i~~~~~~-----------~~~~~~~~----~~~~~s~~~~~~~~~~~~~i~i~ 415 (871)
....++.+++|+.+-.. .+++. +.++... ..+..|++ ..++-+|+|+++++..+|.-.||
T Consensus 300 -eeP~vsMd~~gKIiwa~-~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIy 377 (794)
T KOG0276|consen 300 -EEPAVSMDSNGKIIWAV-HSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIY 377 (794)
T ss_pred -CCCceeecCCccEEEEc-CceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEE
Confidence 11245555555433222 22221 1111111 11222332 35677899999999999988888
Q ss_pred e-cccccc---eeeecCccceeeecCcEEEEEeCC-eEEEEeccCCcEEEEEEcceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 416 S-KNFQEK---RSVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 416 ~-~~~~~~---~~~~~~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
. +..+.. ......+.++ ..-.|+..++ .|.++ .+.+..+.++..-. ...--.|.+|.+.+.+..+++.
T Consensus 378 Tala~RnK~fG~~~eFvw~~d----sne~avRes~~~vki~--knfke~ksi~~~~~-~e~i~gg~Llg~~ss~~~~fyd 450 (794)
T KOG0276|consen 378 TALALRNKAFGSGLEFVWAAD----SNEFAVRESNGNVKIF--KNFKEHKSIRPDMS-AEGIFGGPLLGVRSSDFLCFYD 450 (794)
T ss_pred EeeehhhcccccceeEEEcCC----CCeEEEEecCCceEEE--ecceeccccccccc-eeeecCCceEEEEeCCeEEEEE
Confidence 5 111110 1111134454 5566666655 67666 55555555443221 2222456778888888777764
Q ss_pred ecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEecc-EEE-EEccCCeEEEEE---C----------CeEeE-
Q 002881 491 YNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGD-CFI-YNNSSWRLNYCV---G----------GEVTT- 554 (871)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~-~~i-~~~~~~~l~~~~---~----------~~~~~- 554 (871)
... -..+..|....+.+.|.++ .++ ..++.. ||+ + +....
T Consensus 451 W~~---------------------~~lVrrI~v~~k~v~w~d~g~lVai~~d~S---fyil~~n~d~v~~a~e~g~~v~e 506 (794)
T KOG0276|consen 451 WES---------------------GELVRRIEVTSKHVYWSDNGELVAIAGDDS---FYILKFNADAVANAVEQGIEVTE 506 (794)
T ss_pred ccc---------------------ceEEEEEeeccceeEEecCCCEEEEEecCc---eeEEEecHHHHHHHHhcCCCCcc
Confidence 221 2334455667777888874 332 222221 221 0 00000
Q ss_pred ---------EEecccceE-------EEEEeeeCCEEEEEecCCceEEEEecchhHhHHHHHHccCH-HHHhhhCCCCCcc
Q 002881 555 ---------MFHLDRPMY-------LLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDL-ERANEILPSIPKE 617 (871)
Q Consensus 555 ---------~~~~~~~~~-------~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~a~~~l~~i~~~ 617 (871)
+.+....+. .+-|....+|+...=.......+.++........ +.+++. -.+.+-+..+.-.
T Consensus 507 eGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy-~~~~~rvYL~Dke~nVi~y~ 585 (794)
T KOG0276|consen 507 EGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGY-VANDNRVYLHDKELNVISYK 585 (794)
T ss_pred hhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccchhheee-eecCCEEEEeecccceEeEe
Confidence 000000000 0111122233322112222333333211111000 000000 0000000000000
Q ss_pred hhHHHHHH--HHhCCChhhhhhcc----cCcccc-eeeeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHH
Q 002881 618 HHNSVARF--LESRGMIEEAIEVA----TDPDYR-FELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGC 690 (871)
Q Consensus 618 ~~~~~~~~--~~~~~~~~~a~~~~----~~~~~~-f~~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~ 690 (871)
-.-.+..| +.-.+..+.|..+. .+...+ -.+.-.+|.-++|++++-.-+ + -=+.|++.|++++|..
T Consensus 586 l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d--~----rFelal~lgrl~iA~~- 658 (794)
T KOG0276|consen 586 ILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPD--Q----RFELALKLGRLDIAFD- 658 (794)
T ss_pred eehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChh--h----hhhhhhhcCcHHHHHH-
Confidence 00011111 11122333333211 111111 122236777788887764322 2 2246788888888888
Q ss_pred HHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCch
Q 002881 691 MKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIP 753 (871)
Q Consensus 691 y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~ 753 (871)
+.....+..+.++|++.+...++..+|.+|+....|+..-.=++..+|.-+
T Consensus 659 ------------la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 659 ------------LAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAE 709 (794)
T ss_pred ------------HHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChh
Confidence 777778888899999999999999999999999888888777777777655
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-36 Score=308.30 Aligned_cols=431 Identities=15% Similarity=0.247 Sum_probs=346.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeee-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
...+.+++++..||+.+|++++....+++|.+.+++.++..+. |+.||..++|+|.+..+++|+.||.++|||+..+.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3456899999999999999999999999999999999999987 999999999999999999999999999999999999
Q ss_pred EEEEccCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 169 (871)
.+.|++|.+.|.++.|+|+.. .|++|..|+.+++||+++...+..++..|.+.|+++.+.+ ++..+++++.|..+.+
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIV 218 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEE
Confidence 999999999999999999765 4889999999999999977666778889999999999999 7899999999999999
Q ss_pred EECCCCCCeEEEecCCCCeeEEEEeec---CCcCEEEEEeCCCeEEEEECCCCceEEEecCc-ccCeEEEEEcCCCCEEE
Q 002881 170 WNLGSPDPNFTLDAHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIII 245 (871)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~i~~i~~~~~---~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~i~~~p~~~~l~ 245 (871)
||+.+.+....+.. ...+-++.+-++ +++.++++.+.+|.+++||..++++....+.. ...+..+...+....++
T Consensus 219 wd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPL-YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred eehhhhhhhheech-hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 99976665555432 334555555554 22348999999999999999988876554433 23366666666556677
Q ss_pred EEECCCcEEEEeCCCCeEEEEEecCCccEEEEEE-eeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEE
Q 002881 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY-MKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQT 324 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~-~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (871)
..+.|..+.++|..+.+....+-+..+.|..++| .|+.++|+++++.+.++++........ +
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--------i--------- 360 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--------I--------- 360 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--------E---------
Confidence 7777899999999999999999888899999886 467899999999999988621111000 0
Q ss_pred EEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeecc---------cccCcCceeE
Q 002881 325 VNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAW---------RNRSFGSALE 394 (871)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~---------~~~~~~~~~~ 394 (871)
+..++..+-++....+|-+|++|+ |+.+++|..... -..+...+.+
T Consensus 361 ------------------------i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 361 ------------------------IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ------------------------EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 122222334555557778899998 899999977221 1345677788
Q ss_pred EEEecCC-cEEEEec-CCeEEEeecccccce-----------------eeec-CccceeeecCcEEEEEeCC-eEEEEec
Q 002881 395 FVWSSDG-EYAVRES-SSKIKIFSKNFQEKR-----------------SVRP-TFSAERIYGGTLLAMCSND-FICFYDW 453 (871)
Q Consensus 395 ~~~s~~~-~~~~~~~-~~~i~i~~~~~~~~~-----------------~~~~-~~s~~~i~~~~~La~~~~~-~v~~~d~ 453 (871)
++++..+ .++++.+ |.++++|++...... .+.. +++|+ ..++|+++.| +..+|++
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n----dkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN----DKLIATGSQDKTAKIWDL 492 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC----CceEEecccccceeeecc
Confidence 8887655 5667666 899999986541111 1111 34555 8899999999 9999999
Q ss_pred cCCcEEEEEEc---ceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 454 AECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 454 ~~~~~~~~~~~---~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
+.+++...+.+ ++++|.|++....+++++.|..+.+|
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 99998888775 89999999999999999999999988
No 18
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-36 Score=313.52 Aligned_cols=665 Identities=19% Similarity=0.298 Sum_probs=409.2
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
.+..+|..|.++|..++|||+++++++|+.|-.|+||++.+.+.+.++.+|-+.|+.+.|++.-.||+++|+|.+|+|||
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----------------------------ceEEEE
Q 002881 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----------------------------WMCTQI 137 (871)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------~~~~~~ 137 (871)
+.+++++..+.+|+..|.|..|+|....++++|-|.+|++||+..- ..+..+
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999999999999999999999998531 234567
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC--eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEE
Q 002881 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (871)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d 215 (871)
+.+|...|.-++|+| .-.++++|+.|+.|++|.++..+. +-+..+|...|.++-|+|..+ ++++.+.|+.|++||
T Consensus 202 LEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~--lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD--LILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc--eeEecCCCccEEEEe
Confidence 789999999999999 678999999999999999965442 345679999999999998766 899999999999999
Q ss_pred CCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC------CccEEEEEEeeCCCeEEEE
Q 002881 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG------LERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~g 289 (871)
+...+.+++++...+..+.++-+|..+++++|. |+-+.+|.+...++...+... ...+....+... +-.+++
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~-~d~~v~ 356 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQ-KDTAVA 356 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccc-ccceeE
Confidence 999999999988888999999999999888776 555667766533332222111 123333333221 111111
Q ss_pred EcCCeEEEecCCCcceEEEeCCC-cEEEEeecceEEEEEeecCcceeccCCCeee-eeeeecCccccCCceEEECCCCCE
Q 002881 290 YDEGTIMVKIGREEPVASMDNSG-KIIWAKHNEIQTVNIKSVGADYEVTDGERLP-LAVKELGTCDLYPQSLKHNPNGRF 367 (871)
Q Consensus 290 ~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~ 367 (871)
.-.+.-..| ......++.+.. .++..++.+-..+.+-..+.. +++..-. ...+. .....+-...+ ++
T Consensus 357 ~lr~~g~~~--~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~---~~~~~~~~~~~k~-----tG~~a~fvarN-rf 425 (1202)
T KOG0292|consen 357 SLRRPGTLW--QPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD---SDGVSDGKDVKKG-----TGEGALFVARN-RF 425 (1202)
T ss_pred eccCCCccc--CCcceeeeccccCeEEEEeccCCCeEEEEEecCc---ccccCCchhhhcC-----CCCceEEEEec-ce
Confidence 111100011 011112222222 222222222222222111100 0111000 00000 00112222222 22
Q ss_pred EEEEc-CCcEEEEEeeccccc---CcCceeEEEEecCCcEEEEecCCeEEEeecccccc-eeeec------Cccceeeec
Q 002881 368 VVVCG-DGEYIIYTALAWRNR---SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEK-RSVRP------TFSAERIYG 436 (871)
Q Consensus 368 lav~~-~~~~~i~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~------~~s~~~i~~ 436 (871)
.+.-. +.++.+-+......+ ....+..+-+..+|.+++. +...|.+||++.+.. .++.. .+|.+
T Consensus 426 avl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~~s~vkyvvws~d---- 500 (1202)
T KOG0292|consen 426 AVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSND---- 500 (1202)
T ss_pred EEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEecCceeEEEEcCc----
Confidence 22222 223332222211111 1123344545555555443 455688888665432 12221 45565
Q ss_pred CcEEEEEeCCeEEEEeccCCcEEEEEE--cceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccc
Q 002881 437 GTLLAMCSNDFICFYDWAECRLIRRID--VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDA 514 (871)
Q Consensus 437 ~~~La~~~~~~v~~~d~~~~~~~~~~~--~~i~~i~~s~~~~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (871)
.+++|.-+..+|.+++.. -+++..+. ..|++-+|..+|-++-+..+.-.| .+.+ .+.|+...
T Consensus 501 m~~vAll~Kh~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~nHikY-----------al~~----GD~GIikT 564 (1202)
T KOG0292|consen 501 MSRVALLSKHTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKY-----------ALEN----GDSGIIKT 564 (1202)
T ss_pred cchhhhcccceEEEEecc-hhheecchheeEeeeceeccCceEEEEehhhhhh-----------hhcc----CCcceEEe
Confidence 778888777888888844 33444333 478889999887655444332111 1221 12333222
Q ss_pred eeeeeeeeeEEEeeEEeccEEEEEccCCeEEEEECCeEe-EEEecccceEEEEE-------------eeeC-----CEEE
Q 002881 515 FELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVT-TMFHLDRPMYLLGY-------------LASQ-----SRVY 575 (871)
Q Consensus 515 f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~-----~~l~ 575 (871)
.+. ...+..-. +...||.+.+.. .+.+++...|.+++ ..+. ..+.
T Consensus 565 Ld~---------------~iyitkv~-gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIa 628 (1202)
T KOG0292|consen 565 LDK---------------PIYITKVK-GNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIA 628 (1202)
T ss_pred ccc---------------ceEEEEee-CCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHH
Confidence 111 11222222 223333321111 11222222111110 0000 0000
Q ss_pred EEecCCce--EEEEecchhHhHHHHHHccCHHHHhhhCCCCCcchhHHHHHHHHhCCChhhhhhcccCcccceeeeeccC
Q 002881 576 LIDKEFNV--MGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLG 653 (871)
Q Consensus 576 ~~d~~~~~--~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~ 653 (871)
.+.++|-+ ..-.+.-.-.+|..+++-|+++.|.+.-..+..+.+. ++. -+-||..|
T Consensus 629 YLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w------------~rL----------ge~Al~qg 686 (1202)
T KOG0292|consen 629 YLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVW------------ERL----------GEEALRQG 686 (1202)
T ss_pred HHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHH------------HHH----------HHHHHHhc
Confidence 00111111 0000111223455666666666664444444333321 110 13345777
Q ss_pred CHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHH
Q 002881 654 RLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAF 730 (871)
Q Consensus 654 ~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 730 (871)
+-+.|.-+.++.. -|.+|...++-.|+.+.-.++...+ +|..+........|| ++.-.++....|...+|.
T Consensus 687 n~~IaEm~yQ~~k---nfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~d---v~ervkIl~n~g~~~lay 760 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTK---NFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGD---VKERVKILENGGQLPLAY 760 (1202)
T ss_pred chHHHHHHHHHhh---hhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhcc---HHHHHHHHHhcCcccHHH
Confidence 7777777776544 6888888888899988888887766 466666666666788 778888999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHCCC
Q 002881 731 LCLFMLGKLEDCLQLLVESNR 751 (871)
Q Consensus 731 ~~~~~~g~~~~a~~l~~~~~~ 751 (871)
..+.-.|.-++|.++..+.+.
T Consensus 761 lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 761 LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHhhcCcHHHHHHHHHhhcc
Confidence 999999999999999887764
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=313.33 Aligned_cols=344 Identities=22% Similarity=0.384 Sum_probs=285.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC-CeEEEEECCCCcE
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD-MFIRVYNYNTMDK 91 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~ 91 (871)
..+..|++.+|||....|++|-.+|...+|.+....+++.+.....+|..+.|+..|+||+.|+.. |++-||++.+..-
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 345789999999999999999999999999999999999999999999999999999999999875 8999999999888
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
+...++|...+++++++|||+++++|++||.|+|||..++ -+..++..|+..|+.+.|+. .++.+++++.||+|+.||
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeee
Confidence 8888999999999999999999999999999999999998 88999999999999999998 899999999999999999
Q ss_pred CCCCCCeEEEecC-CCCeeEEEEeecCCcCEEEEEeCCC-eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 172 LGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 172 ~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
+...+..+++... +....|++..|.|. ++++|+.|. .|.+|++++|+.+..+.+|.++|.+++|+|.+..|+++|.
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGe--lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGE--LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCC--EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 9888877777643 34567888888787 677777765 5999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCC-eEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceE-EEeCCCcEEEEeecceEEEEE
Q 002881 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA-SMDNSGKIIWAKHNEIQTVNI 327 (871)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 327 (871)
|.+|++||+-.. ....++... ..+..++|+|+|+.|++++-||.|.+|...+.... .++....+
T Consensus 499 DkTVRiW~if~s~~~vEtl~i~-sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~------------- 564 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLEIR-SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL------------- 564 (893)
T ss_pred cceEEEEEeeccCceeeeEeec-cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhc-------------
Confidence 999999998644 244445444 67899999999999999999999999855443222 11111000
Q ss_pred eecCcceeccCCCeee-eeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeec
Q 002881 328 KSVGADYEVTDGERLP-LAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALA 383 (871)
Q Consensus 328 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~ 383 (871)
..|+... .....-.......+.+.+|+||.++..++ .+.+.+|++..
T Consensus 565 ---------~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 565 ---------SGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred ---------cccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 0111000 00000112223557899999999888877 78899998754
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=312.34 Aligned_cols=478 Identities=14% Similarity=0.160 Sum_probs=368.1
Q ss_pred hhhhhccc-CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCC--EEEEEeCCCeEE
Q 002881 6 EIKRKLAQ-RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIR 82 (871)
Q Consensus 6 ~~~~~~~~-h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 82 (871)
++.+.++. |+.||..++|+|.+..|++|+.||.|+|||+..+...+.|.+|.+.|..+.|+|+-+ .|++|..|+.++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 45666776 999999999999999999999999999999999999999999999999999999764 488999999999
Q ss_pred EEECCCCcE-EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC-----CC
Q 002881 83 VYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD-----TN 156 (871)
Q Consensus 83 iw~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~ 156 (871)
+||+++... +..+..|.+.|+++++++++..+++++.|..+.+||+.+- +...++.- ...+-++.+-+ + +.
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~-~~l~~lp~-ye~~E~vv~l~-~~~~~~~~ 251 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY-KKLKTLPL-YESLESVVRLR-EELGGKGE 251 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh-hhhheech-hhheeeEEEec-hhcCCcce
Confidence 999996655 7778899999999999999999999999999999999654 33333332 23366666665 3 46
Q ss_pred EEEEEECCCcEEEEECCCCCCeEEEecC-CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEE
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAV 235 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i 235 (871)
++++++.+|.+++||..+++........ ...+..+...+... .++..+.+..+.+||.++.++...+-|....|..+
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~--~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS--QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC--ceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 9999999999999999988766544322 22255555555444 37777778999999999999999999999999999
Q ss_pred EE-cCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC--------------
Q 002881 236 CF-HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG-------------- 300 (871)
Q Consensus 236 ~~-~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~-------------- 300 (871)
+| .|+.+++++++..+.+++|+..+.... .+.+|.+.|.++....+|-+|++|+.|.++++|-.
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 86 467789999999999999998876655 78899999999997778889999999999999922
Q ss_pred -CCcceEE--EeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeee-eecCccccCCceEEECCCCCEEEEEc-CCc
Q 002881 301 -REEPVAS--MDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAV-KELGTCDLYPQSLKHNPNGRFVVVCG-DGE 375 (871)
Q Consensus 301 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~lav~~-~~~ 375 (871)
+...+.+ +...+--++.+...-.++.+|....+ -++.....+.. .....++..+++++++|+.+++|+|+ |..
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s--~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS--KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCc--ccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 2222222 22333344455555556666654331 01111111111 11245667889999999999999999 889
Q ss_pred EEEEEeeccc-----ccCcCceeEEEEecCCcEEEEec-CCeEEEeeccc-ccceeeec----CccceeeecCcEEEEEe
Q 002881 376 YIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF-QEKRSVRP----TFSAERIYGGTLLAMCS 444 (871)
Q Consensus 376 ~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~-~~~~~~~~----~~s~~~i~~~~~La~~~ 444 (871)
..||.....+ ..|...+.++.|++..+.+++.+ |.+|+||+++. .-.+++.. -+-...+..+..|+++.
T Consensus 487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 9999877543 34556778999999999888887 89999998652 22222221 11222233488888877
Q ss_pred CC-eEEEEeccCCcEEEEEE---cceeEEEEcCCCCEEEEEeCCeEEEEEe
Q 002881 445 ND-FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDTSFYILKY 491 (871)
Q Consensus 445 ~~-~v~~~d~~~~~~~~~~~---~~i~~i~~s~~~~~la~~~~~~~~~l~~ 491 (871)
.+ .+++|++++++.+..++ ..|+.+.-++...++++++.|+.+++|.
T Consensus 567 adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 77 99999999999888776 4899999999999999999999999883
No 21
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.5e-39 Score=309.27 Aligned_cols=282 Identities=23% Similarity=0.376 Sum_probs=255.3
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCc
Q 002881 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGW 132 (871)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 132 (871)
+...||..+.|+++++.|+||+.+|.+++|+..+...+.++.+|.+.+.++.|+|. +..|++|+.||++++|++++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 35679999999999999999999999999999999999999999999999999997 568999999999999999987
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEE
Q 002881 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (871)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~ 212 (871)
.....+.+|...|..++|+| ++++|.+++.|.+-++||++++......++|..+|.+++|.|+|. ++++|+.|..-+
T Consensus 252 ~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS--L~~tGGlD~~~R 328 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS--LAATGGLDSLGR 328 (459)
T ss_pred cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc--eeeccCccchhh
Confidence 67788899999999999999 899999999999999999999998888899999999999999998 899999999999
Q ss_pred EEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEee-CCCeEEEEEc
Q 002881 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK-SSRRIVIGYD 291 (871)
Q Consensus 213 v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~g~~ 291 (871)
|||+++++++..+.+|..+|.++.|+|+|-.++|||.|++++|||++..+.+.++..|.+-|..+.|+| .|.+|++++.
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred CCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEE
Q 002881 292 EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC 371 (871)
Q Consensus 292 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~ 371 (871)
|+++.+|....-. .++.+..++..+-++.++||+++++++
T Consensus 409 D~t~kiWs~~~~~----------------------------------------~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 409 DNTVKIWSTRTWS----------------------------------------PLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred CcceeeecCCCcc----------------------------------------cchhhcCCccceEEEEeccCCceEEEe
Confidence 9999999443210 112234555566678888888888877
Q ss_pred c-CCcEEEEE
Q 002881 372 G-DGEYIIYT 380 (871)
Q Consensus 372 ~-~~~~~i~~ 380 (871)
+ |..+.+|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 7 77777763
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-37 Score=302.12 Aligned_cols=322 Identities=22% Similarity=0.328 Sum_probs=278.2
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCCC----ceeEEee----------ecCCCEEEEEEeCCCCEEEEEeC
Q 002881 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQ----TMAKSFE----------VTELPVRSAKFVARKQWVVAGAD 77 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~~----~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~ 77 (871)
.|..+|.+.+|+|-.. .+++|+.+...++|++... .....++ ..+..|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3999999999999766 8899999999999998741 1100111 12357999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCE
Q 002881 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 78 dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
||.+++|+. +|..+.++..|.++|.++.|+..|.+|++++.||++.+||..++ ...+.+.-|..+-..+.|- +...
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~--~~~~ 331 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQ--SNDE 331 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEe--cCce
Confidence 999999996 57888999999999999999999999999999999999999988 7788888888887889998 5788
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~ 237 (871)
|++++.||.|+++.+....|+.++.+|.++|+++.|.|.+. +|+++++|+++++|+.........+..|...|..+.|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 99999999999999999999999999999999999999988 8999999999999999888899999999999999999
Q ss_pred cCCCC---------EEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEE
Q 002881 238 HPELP---------IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (871)
Q Consensus 238 ~p~~~---------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~ 308 (871)
+|.|+ .+++++.|++|++||+..+.++.++..|..+|++++|+|+|+++|+|+.||.+.+|......++.-
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 99764 789999999999999999999999999999999999999999999999999999995544333222
Q ss_pred eCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002881 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~ 381 (871)
..+ ...+..+.|+.+|..|.++. ++.+.+.+.
T Consensus 490 ~~~-----------------------------------------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 490 YQG-----------------------------------------TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ecC-----------------------------------------CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 111 11235789999998887765 676666543
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=279.15 Aligned_cols=286 Identities=21% Similarity=0.325 Sum_probs=254.7
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~ 129 (871)
.+++++|...|.++.|++|+++|++++.||.+.|||.-|..+++.++-....|..++|+|.|++++.|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37889999999999999999999999999999999999999999999889999999999999999999999999999998
Q ss_pred CC--c---eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEee-cCCcCEEE
Q 002881 130 KG--W---MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLI 203 (871)
Q Consensus 130 ~~--~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~ 203 (871)
+. . ...+.+.+|.+++.|+.|-+ .+.+++++.|.+..+||+++++....+.+|.+.|.+++++| +++ .++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n--tFv 203 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN--TFV 203 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC--eEE
Confidence 43 2 45667899999999999985 67899999999999999999999999999999999999999 444 899
Q ss_pred EEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC--CccEEEEEEee
Q 002881 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMK 281 (871)
Q Consensus 204 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~i~~~~ 281 (871)
+|+.|+..++||++.+.+.+++.+|...|.+++|+|+|.-+++|+.|++.++||++..+.+..+... ..+|++++||.
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999888777644 35799999999
Q ss_pred CCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEE
Q 002881 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (871)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (871)
.|++|.+|+.|..+.+|....... . -.+..++..++++..
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~------------------------------------v----g~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGER------------------------------------V----GVLAGHENRVSCLGV 323 (343)
T ss_pred cccEEEeeecCCceeEeeccccce------------------------------------E----EEeeccCCeeEEEEE
Confidence 999999999999999983221111 0 113455667789999
Q ss_pred CCCCCEEEEEc-CCcEEEE
Q 002881 362 NPNGRFVVVCG-DGEYIIY 379 (871)
Q Consensus 362 s~~g~~lav~~-~~~~~i~ 379 (871)
+|||..|++++ |..+.||
T Consensus 324 s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred CCCCcEEEecchhHheeec
Confidence 99998888877 7777776
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.8e-37 Score=299.92 Aligned_cols=277 Identities=24% Similarity=0.361 Sum_probs=258.9
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
..|++++|+.+|..||+|..||.++||+ .+|.++.++..|++||.++.|+.+|++|++++.|+++.+||..++.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5799999999999999999999999999 678889999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 96 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
.-|..+-..+.|-.+. .+++++.||.|+++.+... .+..++.+|.+.|.++.|+| .+.+|++++.|+++++|+....
T Consensus 315 ~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeccCCccceEEecCc-eEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCC
Confidence 9999887889998654 6899999999999999877 67788888999999999999 7999999999999999999988
Q ss_pred CCeEEEecCCCCeeEEEEeecCC-------cCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE
Q 002881 176 DPNFTLDAHQKGVNCVDYFTGGD-------KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 176 ~~~~~~~~~~~~i~~i~~~~~~~-------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
.....+..|...|..+.|+|.+. +..+++++.|++|++||...+.++.++..|..+|.+++|+|+|.++++|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 88899999999999999999763 34789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
.||.|.+|+.+++++.+++... +.|..++|+.+|..|.++..+|.+.+
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred CCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceE
Confidence 9999999999999999998876 66999999999999999999998876
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-37 Score=292.32 Aligned_cols=294 Identities=27% Similarity=0.451 Sum_probs=277.0
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
++.+...+.+|..+|+.+-|+|+...+++++.|++|++||..+|+....+++|...|.++.|+..|+++++++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCC-CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002881 84 YNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 84 w~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
||..+ .++++...+|...|.+++|-|.|.+|++++.|.+|+.|++.++ .+..++.+|...|..+..+. ++.++++++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~-DGti~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQ-DGTIIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecC-CeeEEEecC
Confidence 99986 5677888899999999999999999999999999999999999 78889999999999999998 899999999
Q ss_pred CCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecC-------------CcCEEEEEeCCCeEEEEECCCCceEEEecCcc
Q 002881 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-------------DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-------------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 229 (871)
.|.++++|-+.+.++...++.|+.+|-|++|.|.. ..+++.+++.|++|++||+.++.++.++.+|.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 99999999999998888999999999999998742 12489999999999999999999999999999
Q ss_pred cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
+.|..++|+|.|++|+++..|+++++||+++++++.++..|..-+.++.|+.+..++++|+-|..+.+|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999998874
No 26
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=301.53 Aligned_cols=686 Identities=14% Similarity=0.195 Sum_probs=421.4
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 84 (871)
..+...+++|.+.|.|++|+.||+.+|+|+.|..|.+|+..-... ..+ .|.+.|.|+.|+|-...|++++-+ ..-+|
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 345678999999999999999999999999999999999543222 223 389999999999999999998764 36688
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce-EEEEeecCCcceEEEEEecCC----CCEEE
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKD----TNTFA 159 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~----~~~l~ 159 (871)
+.......+ ......+.+++|+.||++++.|-.+|+|.+-+-..... ......+.+.+|.+++|+|.. ..+++
T Consensus 120 S~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 120 SPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred ChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 866432221 12345788999999999999999999999987544322 122234567899999999943 35789
Q ss_pred EEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 002881 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p 239 (871)
+.....++.+|.+.+ +.+..-+.-.-...|+++.++|. |++.|+.|+.+.+|. +.|-.+-++-.....|+.++.+|
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGE--y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGE--YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCc--EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc
Confidence 999999999999854 33433334445567999999998 999999999999997 45777888877888999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEec---CCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEE
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIW 316 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~ 316 (871)
+++.++.|+.||+|..|++.....-..... .....+.+- -+.|.++. .+++.-.....-.+++ ..++..
T Consensus 274 NsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVi----vQhLi~~q---kvrIkC~DLVkKiaiY-rnrLAV 345 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVI----VQHLITEQ---KVRIKCKDLVKKIAIY-RNRLAV 345 (1081)
T ss_pred CCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHH----HHHHhhcc---eeeeeHHHHHHHHHhh-hhhhee
Confidence 999999999999999998753221100000 000000000 00011110 1111100000011111 223444
Q ss_pred EeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeec-----ccccCcCc
Q 002881 317 AKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA-----WRNRSFGS 391 (871)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~-----~~~~~~~~ 391 (871)
.....+.++.+.+. +.+.+...+++....+...+-+.+ .++++++|.+.++..++... |..+++..
T Consensus 346 QLpeki~iYel~se-------~~~~mhY~v~ekI~kkf~cSLlVV--c~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iR 416 (1081)
T KOG1538|consen 346 QLPEKILIYELYSE-------DLSDMHYRVKEKIIKKFECSLLVV--CANHIVLCQEKRLQCLDFSGVKEREWQMESLIR 416 (1081)
T ss_pred cccceEEEEecccc-------ccccchhHHHHHHHhhccceEEEE--EcCeEEEEcccceeeecccchhhhhhhHHHHHH
Confidence 44555555554321 112222222221111111122222 34668888888888887643 55555555
Q ss_pred eeEEEEecCCc--EEEEecCC-eEEEeecccc-------cceeeec-CccceeeecCcEEEEEeCC-eEEEEeccCCcEE
Q 002881 392 ALEFVWSSDGE--YAVRESSS-KIKIFSKNFQ-------EKRSVRP-TFSAERIYGGTLLAMCSND-FICFYDWAECRLI 459 (871)
Q Consensus 392 ~~~~~~s~~~~--~~~~~~~~-~i~i~~~~~~-------~~~~~~~-~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~ 459 (871)
...+.-.|-|+ .++...+| ..+|| ++.. ....+++ +++.. ...||+..++ +..+||+.+++.+
T Consensus 417 YikV~GGP~gREgL~vGlknGqV~kiF-~dN~~PiLl~~~~tAvrClDINA~----R~kLAvVDD~~~c~v~DI~t~elL 491 (1081)
T KOG1538|consen 417 YIKVIGGPPGREGLLVGLKNGQVLKIF-VDNLFPILLLKQATAVRCLDINAS----RKKLAVVDDNDTCLVYDIDTKELL 491 (1081)
T ss_pred hhhhhcCCCCcceeEEEecCCcEEEEE-ecCCchhheecccceeEEeeccCC----cceEEEEccCCeEEEEEccCCceE
Confidence 55565567664 34444454 46676 3322 1222332 55555 7899999888 9999999999988
Q ss_pred EEEEcceeEEEEcCCC-CEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEeccEEEEE
Q 002881 460 RRIDVTVKNLYWADSG-DLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYN 538 (871)
Q Consensus 460 ~~~~~~i~~i~~s~~~-~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~ 538 (871)
.+ +.++.+++||... .++++.+. +.+-++-. .|+.-. .+.. + |+..
T Consensus 492 ~Q-Epg~nSV~wNT~~E~MlcfT~~-g~L~VR~~---------------------~~P~h~---qk~~------G-~VvG 538 (1081)
T KOG1538|consen 492 FQ-EPGANSVAWNTQCEDMLCFTGG-GYLNVRAS---------------------TFPVHR---QKLQ------G-FVVG 538 (1081)
T ss_pred ee-cCCCceEEeeccccceEEEecC-CceEEEec---------------------cCCcch---hcce------E-EEEE
Confidence 76 5689999999654 45565555 55544311 022211 0000 1 1111
Q ss_pred ccCCeEEEEECCeEeEEEecccceE--EEEE-----eeeCCEEEE---EecCCceEEEEecchhHhHHHHHHccCHHHHh
Q 002881 539 NSSWRLNYCVGGEVTTMFHLDRPMY--LLGY-----LASQSRVYL---IDKEFNVMGYTLLLSLIEYKTLVMRGDLERAN 608 (871)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~l~~---~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~ 608 (871)
-..+++ |+.-+. .+..++.|.. +.-+ ++..-++.| .+.+- .. -.+.++...+|+.|.
T Consensus 539 ~~gsk~-FCL~~~--~i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW---------~~-LA~~ALeAL~f~~AR 605 (1081)
T KOG1538|consen 539 YNGSKI-FCLHVF--SISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDW---------RE-LAMEALEALDFETAR 605 (1081)
T ss_pred ecCceE-EEEEee--eeecccccccccchhhhhccchhhhhcccccceecchH---------HH-HHHHHHhhhhhHHHH
Confidence 111111 111000 0111111111 1001 111111111 11110 00 012333344444433
Q ss_pred hhCCCCCcchh--------------------------------HHHHHHHHhCCChhhhhhcccCcccceeeeeccCCHH
Q 002881 609 EILPSIPKEHH--------------------------------NSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLE 656 (871)
Q Consensus 609 ~~l~~i~~~~~--------------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~ 656 (871)
+.+..+..-.. ...++.+.+.|+-.+ ++||+-++++||
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enR----------AlEmyTDlRMFD 675 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENR----------ALEMYTDLRMFD 675 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhh----------HHHHHHHHHHHH
Confidence 22222211111 122233333333333 459999999999
Q ss_pred HHHHHHHHcCChH---HHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCC---------------HHHHHHHHH
Q 002881 657 VAQEIATEVQSES---KWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGD---------------AEGISKLAS 718 (871)
Q Consensus 657 ~A~~~~~~~~~~~---~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~---------------~~~~~~l~~ 718 (871)
.|.++......++ +-|+-|++|-...+...|.+++..+|+..+...+-...|. .+.++.++.
T Consensus 676 ~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ 755 (1081)
T KOG1538|consen 676 YAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCAT 755 (1081)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHH
Confidence 9999998876643 6777888888889999999999988888877765444443 445667777
Q ss_pred HHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHHh
Q 002881 719 LAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL 778 (871)
Q Consensus 719 ~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~~~~~~~~~~~~L 778 (871)
........-+|..++..+||...-++|.++.++|++|+.+|..| |+.++.+.-.|.++|
T Consensus 756 ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWL 814 (1081)
T ss_pred HHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHh
Confidence 77888888999999999999999999999999999999999998 666666644455554
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.2e-38 Score=302.91 Aligned_cols=281 Identities=27% Similarity=0.470 Sum_probs=251.3
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
-+|..+.|.|+|+.|++|+..|.+.+|+..+-.....+..|+.+|+++.|++++.++++|+.+|.|++|+.+- ..++.+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHh
Confidence 4789999999999999999999999999755544455678999999999999999999999999999999753 445555
Q ss_pred ccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 96 EAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 96 ~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
.+| ...|++++|+|+...+++|++||+|+|||.... .....+.+|.-.|.+++|+| ....+++++.|..|++||.++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC
Confidence 554 489999999999999999999999999999876 55566799999999999999 788999999999999999999
Q ss_pred CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC-CEEEEEECCCcE
Q 002881 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTV 253 (871)
Q Consensus 175 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~~~dg~v 253 (871)
++++.++..|+..|..+.|+++++ +|++++.|..++++|+++.+.++++++|...++++.|+|-. .+|.+|+.||.|
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N--~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGN--WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCC--eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999999985 99999999999999999999999999999999999999944 588899999999
Q ss_pred EEEeCCCCeEEEEE-ecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 254 RIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 254 ~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
..|.+...+.+..+ ..|...||+++|+|-|-.|++|+.|.++++|...
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998855544444 3567899999999999999999999999999543
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.7e-35 Score=262.61 Aligned_cols=268 Identities=19% Similarity=0.394 Sum_probs=239.6
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCeEEE
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCV 105 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~i 105 (871)
-+|+++++|.+|++|...+|...++++..++.|+.+...|+++.||+++. ..|++||++++. ++.++.+|.+.|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37889999999999999999999999988899999999999999999876 469999999775 578899999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE-ecC
Q 002881 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAH 184 (871)
Q Consensus 106 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~ 184 (871)
.|..+|+.+++||+||+++|||++.. .+.+.+ .|..+|.++..+| +...|++|..+|.|++||+........+ ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~-~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNY-QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc-ccchhc-cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999985 455554 4779999999999 7889999999999999999887665544 334
Q ss_pred CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC------ceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 185 ~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
..+|.++...|+|. +++.+...|..++|++-+. .++..++.|.+.+..+.+||++++|+++|.|.+++||+.
T Consensus 167 ~~~i~sl~v~~dgs--ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGS--MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCc--EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 57899999999998 7999999999999998754 356678889999999999999999999999999999999
Q ss_pred CCC-eEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 259 TTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 259 ~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
.+. +....+..|...+|.++||.||.+|++|+.|+..++|...
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 887 7778888898999999999999999999999999999443
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=264.97 Aligned_cols=298 Identities=21% Similarity=0.295 Sum_probs=245.1
Q ss_pred eeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECC-----CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 002881 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYN-----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 122 (871)
...++++|++.|+.++..+. .+.+++++.|..+.+|++. .|..++.+.+|+..|..+..+++|++.++++.|+.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 44578899999999999987 5677888999999999875 46778899999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecC-CCCeeEEEEeecCCcCE
Q 002881 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPY 201 (871)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~ 201 (871)
+++||+.++ ...+.+.+|...|++++|+| ++..+++|+.|.+|++|+.-+.......... ..-|.|+.|+|+...++
T Consensus 87 lrlWDl~~g-~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATG-ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCC-cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 999999998 78889999999999999999 8999999999999999998665433333322 67899999999988889
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEee
Q 002881 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (871)
Q Consensus 202 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 281 (871)
|++++.|++|++||+++.+....+.+|.+.++.+.+||||.+.++|+.||.+.+||++.++.+.++... ..|.+++|+|
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~~v~sl~fsp 243 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-DIVNSLCFSP 243 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-CeEeeEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999998887655 7899999999
Q ss_pred CCCeEEEEEcCCeEEEecCCC-cceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEE
Q 002881 282 SSRRIVIGYDEGTIMVKIGRE-EPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (871)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (871)
+...|+.+...+ |.||.... ..+..+.+++.- . . ..........++
T Consensus 244 nrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g-------------------------~--s-----~~~~~~~clsla 290 (315)
T KOG0279|consen 244 NRYWLCAATATS-IKIWDLESKAVVEELKLDGIG-------------------------P--S-----SKAGDPICLSLA 290 (315)
T ss_pred CceeEeeccCCc-eEEEeccchhhhhhccccccc-------------------------c--c-----cccCCcEEEEEE
Confidence 998888887776 56653222 112122111000 0 0 001111223678
Q ss_pred ECCCCCEEEEEc-CCcEEEEEee
Q 002881 361 HNPNGRFVVVCG-DGEYIIYTAL 382 (871)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~~~~ 382 (871)
|++||+.|..+- ++.+.+|.+.
T Consensus 291 ws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 291 WSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EcCCCcEEEeeecCCcEEEEEee
Confidence 999999877665 8888888653
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=280.01 Aligned_cols=291 Identities=19% Similarity=0.406 Sum_probs=265.9
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
..++.+.+.+|.+.|.|+++.|...++++|+.|+++.|||+.+|++..++.+|-..|+.+++|+...++++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
||++..+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++. .....+.+|..+|.++.+.| -+..+++|+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQP-TDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeec-CCCceEEecC
Confidence 999999999999999999999999999999999999999999999997 77889999999999999999 5667999999
Q ss_pred CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 002881 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 243 (871)
|++|++||++.++....+..|...+.+++.+|... .+++++.| .|+-|++..|..+..+.+|...|.+++...|+ +
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~--~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN--LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchh--hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 99999999999999999999999999999999875 46666655 79999999999999999999999999999886 8
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEEe---c-----CCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 244 IITGSEDGTVRIWHATTYRLENTLN---Y-----GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~---~-----~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
+++|+.+|.+.+||.++|-..+... . ....|.+.+|...|..|++|..|.+|.+|..
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 8999999999999998876443331 1 1246889999999999999999999999843
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=267.04 Aligned_cols=285 Identities=22% Similarity=0.382 Sum_probs=253.0
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCC-CCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQ-SQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
...+.+|.+.|..+.|+|+|++||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+|++.|++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 34678999999999999999999999999999999953 34455677899999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (871)
++|+.++.++.|.+.+..+.-+.-|. .+.+++.||++++||+++. ...+++. .+..++++.|.. .+..+.+|+-|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn 196 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDN 196 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecc-cccceeeccccC
Confidence 99999999999999999998665555 4557889999999999976 4444443 345689999997 788899999999
Q ss_pred cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC----CceEEEecCccc----CeEEEEE
Q 002881 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----KSCVQTLEGHTH----NVSAVCF 237 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~----~v~~i~~ 237 (871)
.|++||++.+.....+.+|..+|+.+..++.|. ++.+-+.|.++++||++- .+++..+.+|.. .....+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs--~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS--FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCC--ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999999999999999999999999988 799999999999999974 345777776644 3567899
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 238 ~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
+|++..+.+|+.|..+++||......+..+++|.+.|.++.|+|....|.+++.|.++++
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999998888899999999999999999999999999999999876
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-33 Score=292.66 Aligned_cols=287 Identities=32% Similarity=0.558 Sum_probs=263.9
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
.+++.+|.++|.+++|+|++++|++++.+|.|.+|++.+++....+..|..++..+.|+|+++.+++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35677999999999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+++....+..|...+.++.|+|++.++++++.+|.|.+||++++ .....+..|...+.++.|+| ++.++++++.+|.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcE
Confidence 98888888899999999999999888888888999999999976 55666678888999999999 67888888889999
Q ss_pred EEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE
Q 002881 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 247 (871)
.+||+++++....+..+...+.++.|+|++. .+++++.++.|++||+++++.+..+..|...+.++.|+|++.+++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcC--EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 9999998888888888888999999999886 68888889999999999988888887888899999999998888888
Q ss_pred ECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+.||.|++|++.+++....+..+...+.+++|+|+++.+++++.||.+.+|
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 889999999999999888888888899999999999999999999999987
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.2e-35 Score=304.26 Aligned_cols=243 Identities=23% Similarity=0.477 Sum_probs=229.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC-------------------------------CceeEEeeecCCCEEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS-------------------------------QTMAKSFEVTELPVRS 62 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~-------------------------------~~~~~~~~~~~~~v~~ 62 (871)
-...++|..|++|+..||.|..|..|++|.+.. ....+++.+|.+||..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 345799999999999999999999999998762 1233457789999999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCC
Q 002881 63 AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS 142 (871)
Q Consensus 63 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 142 (871)
+.|+|+.++|++++.|+++++|.+.+...+..+++|..+|+++.|+|-|-+++|+|.|++-++|..... ...+++.+|-
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghl 535 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHL 535 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 7888999999
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceE
Q 002881 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (871)
Q Consensus 143 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 222 (871)
+.|.|+.|+| +.+++++||.|.++++||..++..++.+.+|.++|.+++|+|+|. +|++|+.||.|.+||+.++..+
T Consensus 536 sDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 536 SDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR--YLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred cccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc--eEeecccCCcEEEEEcCCCcch
Confidence 9999999999 899999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002881 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 223 ~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
..+.+|.+.|.++.|+.+|..|++||.|.+|++||+..
T Consensus 613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 613 KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999764
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-33 Score=258.59 Aligned_cols=286 Identities=23% Similarity=0.366 Sum_probs=242.9
Q ss_pred hhhhhhcccCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEeCCCC---ceeEEe-eecCCCEEEEEEeCCCCEEEEEeCCC
Q 002881 5 LEIKRKLAQRSERVKSVDLHPS-EPWILASLYSGTVCIWNYQSQ---TMAKSF-EVTELPVRSAKFVARKQWVVAGADDM 79 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~-~~~la~~~~dg~v~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 79 (871)
+...+.+++|.+++..++|||- |..||+++.|..|+||+...+ .....+ .+|+..|+.++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4566788999999999999998 889999999999999998743 233333 25889999999999999999999999
Q ss_pred eEEEEECCCC--cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCceEEEEeecCCcceEEEEEecCCC
Q 002881 80 FIRVYNYNTM--DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDT 155 (871)
Q Consensus 80 ~i~iw~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~ 155 (871)
++.||.-..+ +++.++++|...|.|++|+++|.+|++|+.|..|.||.+. ....+..++..|...|..+.|+| ..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-Cc
Confidence 9999986643 6788899999999999999999999999999999999988 44567888999999999999999 78
Q ss_pred CEEEEEECCCcEEEEECCC---CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCe
Q 002881 156 NTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV 232 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 232 (871)
.+|++++.|.+|++|+-.. -.+..++.+|...|.+++|.+.|. .+++++.|++++||...+.-. ..|..++
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~--rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~ 236 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS--RLVSCSDDGTVSIWRLYTDLS----GMHSRAL 236 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc--eEEEecCCcceEeeeeccCcc----hhcccce
Confidence 8999999999999998762 246788999999999999999987 599999999999999663211 2367889
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCe------E-EEEEecCCccEEEEEEeeC-CCeEEEEEcCCeEEEec
Q 002881 233 SAVCFHPELPIIITGSEDGTVRIWHATTYR------L-ENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 233 ~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~------~-~~~~~~~~~~i~~i~~~~~-~~~l~~g~~dg~i~i~~ 299 (871)
..+.|. + ..|++++.|+.|++|.....- + ...-..|...|.++.|.|. .++|++|++||.+.+|.
T Consensus 237 Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 237 YDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred Eeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 999999 4 489999999999999755321 1 1123356678999999995 78999999999999983
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.4e-33 Score=265.76 Aligned_cols=328 Identities=17% Similarity=0.271 Sum_probs=275.9
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
...|..|+++|.+++.+|+.+++++|+.|..-.+|+..+|.....+.+|+..|+++.|+.+|.+||+|+-+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
++.....+...-..|.-+.|+|.+..|+.|+.||.+.+|.+.++ ...+++.+|+.++++-.|.| +++.++++..||+|
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti 214 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTI 214 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccC-CCceEEEEecCceE
Confidence 99988888766778999999999999999999999999999987 67889999999999999999 79999999999999
Q ss_pred EEEECCCCCCeEEEecC-CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC--------cccC---eEEE
Q 002881 168 KIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--------HTHN---VSAV 235 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------~~~~---v~~i 235 (871)
++|++.++++...+... .....++.++..+. .++.|..++.+++-+..+++.+....+ +... |-++
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~--~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGS--TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccc--eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 99999999998887633 34567888877776 788999999999999888887766652 3333 4445
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEE
Q 002881 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKII 315 (871)
Q Consensus 236 ~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~ 315 (871)
.|+..-++.|+|+-||+|.|||+...++.+... |...|..+.|-+ ..+|++++.+|.++.|..+.. +..
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG---------~l~ 361 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG---------QLK 361 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeecccc---------ceE
Confidence 566667899999999999999998877666555 446799999998 789999999999999844322 221
Q ss_pred EEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002881 316 WAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~ 381 (871)
.. ...+...+..++++|+++++++.+ ++...+|..
T Consensus 362 ~~-------------------------------y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 362 FT-------------------------------YTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EE-------------------------------EecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 11 122333556788888888888777 677777654
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=284.43 Aligned_cols=280 Identities=23% Similarity=0.385 Sum_probs=242.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (871)
+.+|..+.|.|+|+.|++|+..|.+.+|+..+......+.+|.++|+++.|++++.++++|+.+|.|++|+..-+ .+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHH
Confidence 568999999999999999999999999998655555566799999999999999999999999999999998765 3333
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 137 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
....|...|++++|+| .+..|++++.||+|+|||....+....+.+|.-.|.+++|+|... ++++|+.|..|++||.
T Consensus 175 ~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWDP 251 (464)
T ss_pred hhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeEEccCCceeEeecC
Confidence 3444558899999999 788999999999999999999999899999999999999999866 8999999999999999
Q ss_pred CCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC-CCeEEEEEcCCeE
Q 002881 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTI 295 (871)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~g~~dg~i 295 (871)
+++.++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.+++.|...++++.|+|- ...+++|+.||.+
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999995 5677789999999
Q ss_pred EEecCC-CcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-C
Q 002881 296 MVKIGR-EEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-D 373 (871)
Q Consensus 296 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~ 373 (871)
..|... +.|+..+. ..++..+.+++|+|=|..|+.++ |
T Consensus 332 vh~~v~~~~p~~~i~----------------------------------------~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIP----------------------------------------PAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred EEEeccccccccCCC----------------------------------------cccccceeeeeccccceeEeecCCC
Confidence 987432 22211110 23344567899999999888887 5
Q ss_pred CcEEEEE
Q 002881 374 GEYIIYT 380 (871)
Q Consensus 374 ~~~~i~~ 380 (871)
..+.+|.
T Consensus 372 ~t~rfw~ 378 (464)
T KOG0284|consen 372 RTVRFWT 378 (464)
T ss_pred cceeeec
Confidence 6666664
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.6e-33 Score=250.79 Aligned_cols=266 Identities=19% Similarity=0.345 Sum_probs=234.0
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
+++....+.|..+...|+++.||+++ .-.|++||+++++ ++.++.+|...|+++.|..+|+++++|++||+++|||+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec
Confidence 34444456799999999999999987 5689999999875 57899999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
+...+.+.+. |..+|+++..+|+...|++|..+|.|++||+...............+|.++...| ++.+++.+...|.
T Consensus 113 R~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 113 RSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGN 190 (311)
T ss_pred cCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCcc
Confidence 9866666665 6799999999999999999999999999999987444444555567899999999 8999999999999
Q ss_pred EEEEECCCC------CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcC
Q 002881 167 IKIWNLGSP------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 167 i~i~d~~~~------~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~i~~~p 239 (871)
.++|++-+. .|+.+++.|.+.+..+.+||+++ +|++++.|.+++||+..+. +....+.+|...++..+||.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~ 268 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA 268 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCc--EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc
Confidence 999998654 35667789999999999999988 8999999999999999887 56677889999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEE
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~ 279 (871)
+|.+|++|+.|+.+++|++..++.+....+|.....+++.
T Consensus 269 dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred CccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999999999999999999999999888776666554
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-32 Score=279.09 Aligned_cols=395 Identities=16% Similarity=0.267 Sum_probs=318.3
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
+.-++.||+.+|+++.|+..|..|++|+.|+.|.+||+-...-...+++|+..|+.+-|..+.+++++.+.|+.|++||+
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL 178 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDL 178 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEec
Confidence 44567899999999999999999999999999999999888888899999999999999998999999999999999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------------------------------
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----------------------------------- 131 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------- 131 (871)
.+..+..+.-.|.+.++.+++++ +.+++++.|+.+++|++...
T Consensus 179 ~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 179 ETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSD 256 (888)
T ss_pred ccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcc
Confidence 99999999999999999999998 68999999999999998110
Q ss_pred -----------------------------------------------------------------------------ce-
Q 002881 132 -----------------------------------------------------------------------------WM- 133 (871)
Q Consensus 132 -----------------------------------------------------------------------------~~- 133 (871)
..
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~ 336 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN 336 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence 00
Q ss_pred ----------------------------EEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCC
Q 002881 134 ----------------------------CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (871)
Q Consensus 134 ----------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 185 (871)
..-.+.+|...|.+++++. ++.++..+..+.|++|+..+.++++++...
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~SikiWn~~t~kciRTi~~~- 413 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGESIKIWNRDTLKCIRTITCG- 413 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCCcEEEEEccCcceeEEeccc-
Confidence 0011346777889999985 455555556789999999999999998754
Q ss_pred CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-----
Q 002881 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT----- 260 (871)
Q Consensus 186 ~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~----- 260 (871)
.+.+..|.|.+. ++++|...|.+.+||+.+...+.+++.|.+.|++++.+||+..+++||.|.+|++||..-
T Consensus 414 -y~l~~~Fvpgd~--~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 414 -YILASKFVPGDR--YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred -cEEEEEecCCCc--eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 778888998877 899999999999999999999999999999999999999999999999999999998631
Q ss_pred CeEE--------EEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCc
Q 002881 261 YRLE--------NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (871)
Q Consensus 261 ~~~~--------~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (871)
+..- .++... +.|.++++||||++||++--|.++.++. ++. -+.+
T Consensus 491 gt~~k~lsl~~~rtLel~-ddvL~v~~Spdgk~LaVsLLdnTVkVyf--------lDt-lKFf----------------- 543 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELE-DDVLCVSVSPDGKLLAVSLLDNTVKVYF--------LDT-LKFF----------------- 543 (888)
T ss_pred cccceeeeeccceEEecc-ccEEEEEEcCCCcEEEEEeccCeEEEEE--------ecc-eeee-----------------
Confidence 1111 222222 6799999999999999999999998751 110 0111
Q ss_pred ceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCcCceeEEEEecCCcEEEE
Q 002881 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVR 406 (871)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~ 406 (871)
..+-.+..++.++.+|||++.+++|+ |.++.+|-..-.. -.|-.++.++.|-|....+.+
T Consensus 544 --------------lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 544 --------------LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred --------------eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence 11244556778999999999999998 9999999544322 223357899999998876655
Q ss_pred ec-CCeEEEeecc-cccce-------eeec-CccceeeecCcEEEEEeCC-eEEEEecc
Q 002881 407 ES-SSKIKIFSKN-FQEKR-------SVRP-TFSAERIYGGTLLAMCSND-FICFYDWA 454 (871)
Q Consensus 407 ~~-~~~i~i~~~~-~~~~~-------~~~~-~~s~~~i~~~~~La~~~~~-~v~~~d~~ 454 (871)
.+ ++.++-||-. |.... .+.. ..+|+ |.++++++.| .|++|.-.
T Consensus 610 ~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~----G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN----GSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred ecCcceEEeechhhhhhheeeccchheeeeeEEcCC----CCeEEeccCCceeEeeecc
Confidence 55 8999999832 22222 2222 66777 9999999998 99999743
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-33 Score=247.26 Aligned_cols=290 Identities=19% Similarity=0.264 Sum_probs=256.6
Q ss_pred CCChhhh--hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC
Q 002881 1 MPLRLEI--KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (871)
Q Consensus 1 m~~~~~~--~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 78 (871)
|++.+.. .+.+..|.++|.++.|+-||+|.++++.|.+|++||...|.+++++.+|...|..++.+.|+..+++|+.|
T Consensus 1 ~~~e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 1 MRLELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred CCccCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCC
Confidence 4444433 34678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-ceEEEEeecCCcceEEEEEecCCCCE
Q 002881 79 MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
..+.+||+++|+..+.+.+|...|..+.|+.+...+++|+.|..+++||.++. ..+.+++......|.++..+ +..
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~he 157 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHE 157 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccE
Confidence 99999999999999999999999999999999999999999999999999864 35667777777889999986 578
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeE--EE
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS--AV 235 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~--~i 235 (871)
+++|+.||+++.||++.++.... ....+|+|+.++++++ ..++++-|+++++.|-.+|+.+...++|.+.-. ..
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~n--c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGN--CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred EEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCC--EEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 99999999999999998875443 3457899999999998 799999999999999999999999999987643 45
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCcc-EEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 236 ~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
+++.....+++||+||.|++||+.....+..+..+... +.+++++|.-..+.++...+.+.+
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 66777789999999999999999999999999888776 899999999888888876665443
No 40
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.3e-33 Score=300.95 Aligned_cols=287 Identities=26% Similarity=0.464 Sum_probs=260.4
Q ss_pred hhcccC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 9 RKLAQR-SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 9 ~~~~~h-~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
..+.+| ...|+++.|+|+|.++++++.++.+++|+..+++ ..+.+.+|...|++++|+|+++++++++.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 334444 7889999999999999999999999999997777 7777788999999999999999999999999999999
Q ss_pred C-CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 86 Y-NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 86 ~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
+ ..+..++++.+|...|++++|+|+++.+++|+.|++|+|||++++ .+...+.+|...|.+++|++ +++.+++++.|
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d 309 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP-DGNLLVSASYD 309 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence 9 556889999999999999999999999999999999999999997 88999999999999999999 89999999999
Q ss_pred CcEEEEECCCCC--CeEEEecCCCC--eeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccC---eEEEEE
Q 002881 165 RTIKIWNLGSPD--PNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN---VSAVCF 237 (871)
Q Consensus 165 g~i~i~d~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---v~~i~~ 237 (871)
|.|++||+.++. +...+..+... ++++.|+|++. ++++++.|+.+++||+..+.......+|... +.+...
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~--~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK--YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc--EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 999999999988 45666555544 99999999988 8999999999999999999999999888774 444556
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC-CccEEEEEEeeCCCeEEEEE--cCCeEEEec
Q 002881 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGY--DEGTIMVKI 299 (871)
Q Consensus 238 ~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~g~--~dg~i~i~~ 299 (871)
++.+.++++|+.|+.|++||+.++..+..+..| ...+..+.++|..+++++++ .|+.+.+|.
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 889999999999999999999999999999988 88899999999999999988 788888884
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=271.04 Aligned_cols=291 Identities=17% Similarity=0.256 Sum_probs=248.9
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC---ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 81 (871)
++-.+.+..|++.|.-+.||++|++||+++.|.+..||.+... ++.+++.+|..+|..+.||||.++|++++.+..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 4556788899999999999999999999999999999987654 4577888999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 82 RVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
.+||..+|.....+. +|...+.+++|.|||..+++|+.|+.|..||++.. ....--......|.+++..+ ++.++++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~-Dgk~vl~ 371 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITY-DGKYVLL 371 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcC-CCcEEEE
Confidence 999999999888775 45678999999999999999999999999999865 22222222335699999999 8899999
Q ss_pred EECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccC--eEEEEEc
Q 002881 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN--VSAVCFH 238 (871)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--v~~i~~~ 238 (871)
.+.|..|++|+........ +.....+|++++.+.+++ ++++.-.+..+.+||+.....++.+.||... +-.-||-
T Consensus 372 v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k--~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGK--LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred Eecccceeeechhhhhhhc-cccccCceeEEEEcCCCc--EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 9999999999987654433 334567899999998877 8999999999999999988888888888765 3334554
Q ss_pred C-CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCC-CeEEEEEcCCeEEEecC
Q 002881 239 P-ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 239 p-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~g~~dg~i~i~~~ 300 (871)
. +..++++||+|+.|+||+..+++++.++.+|...|.+++|+|.. ..+|+|++||+|++|-.
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 4 34799999999999999999999999999999999999999964 56889999999999943
No 42
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-33 Score=293.51 Aligned_cols=244 Identities=25% Similarity=0.486 Sum_probs=228.1
Q ss_pred EeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------------------------------CcEEEEEccCCC
Q 002881 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------------------------------MDKVKVFEAHTD 100 (871)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------------------------------~~~~~~~~~~~~ 100 (871)
++......++|..|++|++.||.|..|..|++|.+.. .....++.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 3444456799999999999999999999999998863 112344678999
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE
Q 002881 101 YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (871)
Q Consensus 101 ~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 180 (871)
+|....|+|+.++|++||+|+++++|++.+. .+...+.+|..+|+.+.|+| -+.+|++++.|++.++|......+.+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhh
Confidence 9999999999999999999999999999987 77888899999999999999 799999999999999999999999999
Q ss_pred EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002881 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 181 ~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
+.+|...|.|+.|+|+.. |+++|+.|.+|++||..+|..++.+.||.++|++++|+|+|.+|++|+.||.|.+||+.+
T Consensus 531 faghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hcccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 999999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 261 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
++++..+..|.+.|.++.|+.+|..||+|+.|.+|++|.
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999999999993
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.1e-32 Score=260.36 Aligned_cols=289 Identities=17% Similarity=0.210 Sum_probs=251.4
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
..-.+.+|++.|+++.||.+|.+||+|+-+|.|+||...++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 34567899999999999999999999999999999999999988888766677889999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
.++...+.+.+|+.++++-.|.|+|+.++++..||+|++||+.++......-........++.++. .+..++.|+.++.
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCcc
Confidence 998888999999999999999999999999999999999999999555444434455677888887 7889999999999
Q ss_pred EEEEECCCCCCeEEEe--------cCCCCeeEEEEeecCC-cCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 002881 167 IKIWNLGSPDPNFTLD--------AHQKGVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~--------~~~~~i~~i~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~ 237 (871)
+++....+++.+.... .+...+.|+.+.|... -++.++|+-||+|.+||+...+..... .|...|+.+.|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w 335 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKW 335 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEE
Confidence 9998887777665554 3445566666665432 347889999999999999866554444 48889999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 238 ~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
-+ ..+|++++.+|.|+.||.++|++..++.+|...|.+++++|+.++++++++|+...++
T Consensus 336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 99 6799999999999999999999999999999999999999999999999999998774
No 44
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.1e-30 Score=253.53 Aligned_cols=433 Identities=19% Similarity=0.300 Sum_probs=318.1
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCC--------eEEEEeCCCCceeEEeeecCCCEEEEEEeC--CCCEEEEEe
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSG--------TVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGA 76 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg--------~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~ 76 (871)
.++.+.+|++.|.|++.||+.-.+++|...| .|+|||..+-..+..+...+..|.|++|++ .|..+..-.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4677889999999999999998888876544 499999888887787777788899999998 456665553
Q ss_pred --CCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE--EeecC-CcceEEEEEe
Q 002881 77 --DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGH-SHYVMQVTFN 151 (871)
Q Consensus 77 --~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~~~v~~~~~~ 151 (871)
.+..+.|||+..+......+..++.+....|+|.++.|++....|.+.+|+++++....+ ++.++ ...|.|++|.
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL 255 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence 366899999998888877777888899999999888777777789999999998733322 34333 3679999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceE---------
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--------- 222 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--------- 222 (871)
+ +.-+++|..+|.|.||+.++.+..+....|.++|.+++...+|. |++|+.|+.|..||-. -+.+
T Consensus 256 e--ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~Wd~~-y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 256 E--NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILWDDN-YRKLRETELPEQF 329 (626)
T ss_pred C--CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc---EeecCccceEEecccc-ccccccccCchhc
Confidence 8 44688999999999999988877777779999999999998886 8889999999999832 1110
Q ss_pred --------------------------------EEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC
Q 002881 223 --------------------------------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 223 --------------------------------~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (871)
....+|....+.++.+|+.+.+++++.|+.+++|+ ..+++.+....
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~ 407 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE 407 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec
Confidence 12235666778888888888888888899999998 45566555444
Q ss_pred CccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecC
Q 002881 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELG 350 (871)
Q Consensus 271 ~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (871)
.+..++.|+|.| .+|+|+..|...+- +.....+.. +.
T Consensus 408 -d~~~~~~fhpsg-~va~Gt~~G~w~V~----------d~e~~~lv~-------------------------------~~ 444 (626)
T KOG2106|consen 408 -DPAECADFHPSG-VVAVGTATGRWFVL----------DTETQDLVT-------------------------------IH 444 (626)
T ss_pred -CceeEeeccCcc-eEEEeeccceEEEE----------ecccceeEE-------------------------------EE
Confidence 567888888888 88888888876652 111111100 01
Q ss_pred ccccCCceEEECCCCCEEEEEc-CCcEEEEEeecccc------cC-cCceeEEEEecCCcEEEEec-CCeEEEeeccc-c
Q 002881 351 TCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRN------RS-FGSALEFVWSSDGEYAVRES-SSKIKIFSKNF-Q 420 (871)
Q Consensus 351 ~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~~------~~-~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~-~ 420 (871)
.+...++.++++|+|.++|+++ |+.++||.+..... +. -..++.+.||+|++|+...+ +-.|-.|.... +
T Consensus 445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 1123557899999999999999 89999998765421 11 15678999999999999988 66788884221 1
Q ss_pred c---ceeeec-------Cccceeee------------cCcEEEEEeCC-eEEEEeccCCcEEE---EE---EcceeEEEE
Q 002881 421 E---KRSVRP-------TFSAERIY------------GGTLLAMCSND-FICFYDWAECRLIR---RI---DVTVKNLYW 471 (871)
Q Consensus 421 ~---~~~~~~-------~~s~~~i~------------~~~~La~~~~~-~v~~~d~~~~~~~~---~~---~~~i~~i~~ 471 (871)
+ .+.+.. .|..-... ..++||+++.. +|++|..+-.++-. ++ ...+++++|
T Consensus 525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F 604 (626)
T KOG2106|consen 525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF 604 (626)
T ss_pred ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE
Confidence 1 111111 11110000 36688888877 99999876443322 22 247899999
Q ss_pred cCCCCEEEEEeCCeEEEEE
Q 002881 472 ADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 472 s~~~~~la~~~~~~~~~l~ 490 (871)
..+...+.+.+.|..++-|
T Consensus 605 l~~d~~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 605 LCKDSHLISTGKDTSIMQW 623 (626)
T ss_pred eeCCceEEecCCCceEEEE
Confidence 9877777777777776655
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-30 Score=307.53 Aligned_cols=282 Identities=19% Similarity=0.273 Sum_probs=240.0
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC----c----eeEEeeecCCCEEEEEEeC-CCCEEEEEeCCCeE
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----T----MAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFI 81 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 81 (871)
+..|.+.|.+++|+|+|.+||+|+.||.|+||+..+. . ....+. +...+.+++|+| ++.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4458999999999999999999999999999997542 1 122232 356899999987 47899999999999
Q ss_pred EEEECCCCcEEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++ .....+..+ ..+.++.|++.++..+++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 9999999999999999999999999997 6889999999999999999987 444555544 579999997757899999
Q ss_pred EECCCcEEEEECCCCC-CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC------CceEEEecCcccCeE
Q 002881 161 ASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVS 233 (871)
Q Consensus 161 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~------~~~~~~~~~~~~~v~ 233 (871)
|+.||.|++||+++.. +...+.+|...|.++.|. ++. ++++++.|+.|++||++. ..++..+.+|...+.
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 9999999999998765 566778899999999997 444 799999999999999974 356788999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-------------ecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-------------NYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 234 ~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.++|+|++.+|++|+.||.|++|+.........+ ..+...|.+++|+|++..|++|+.+|.|.+|
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 9999999999999999999999997765433222 1233469999999999999999999999997
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.9e-31 Score=239.09 Aligned_cols=292 Identities=24% Similarity=0.354 Sum_probs=236.3
Q ss_pred ceeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC---cEEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCe
Q 002881 48 TMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTM---DKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDML 122 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~---~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~ 122 (871)
..++.+++|.+++..++|+|- |..||+|+.|..|++|+...+ .+...+ .+|+..|++++|+|.|++|+++|.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 345678889999999999998 889999999999999998853 333333 479999999999999999999999999
Q ss_pred EEEEECCC-CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC---CeEEEecCCCCeeEEEEeecCC
Q 002881 123 IKLWDWEK-GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGD 198 (871)
Q Consensus 123 i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~~ 198 (871)
+.||.-.. ...+..++.+|...|.|++|++ ++++|++++.|+.|-||....+. +...++.|...|..+.|+|..+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 99998663 3467889999999999999999 89999999999999999987543 5567889999999999999877
Q ss_pred cCEEEEEeCCCeEEEEECC---CCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEE
Q 002881 199 KPYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVW 275 (871)
Q Consensus 199 ~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 275 (871)
+|++++.|.+|++|+-. ...+.+++.+|.+.|.+++|+|.|..+++++.|++|+||-..+.- -..+...++
T Consensus 164 --lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y 237 (312)
T KOG0645|consen 164 --LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALY 237 (312)
T ss_pred --eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceE
Confidence 89999999999999866 346799999999999999999999999999999999999854221 123457788
Q ss_pred EEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccC
Q 002881 276 AIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLY 355 (871)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (871)
.+.|. ...|++++.|+.|+++.... -+++....+..+.-+.++..
T Consensus 238 ~v~W~--~~~IaS~ggD~~i~lf~~s~---------------------------------~~d~p~~~l~~~~~~aHe~d 282 (312)
T KOG0645|consen 238 DVPWD--NGVIASGGGDDAIRLFKESD---------------------------------SPDEPSWNLLAKKEGAHEVD 282 (312)
T ss_pred eeeec--ccceEeccCCCEEEEEEecC---------------------------------CCCCchHHHHHhhhcccccc
Confidence 99998 55799999999998852211 11222222222233556668
Q ss_pred CceEEECCC-CCEEEEEc-CCcEEEEEe
Q 002881 356 PQSLKHNPN-GRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 356 ~~~~~~s~~-g~~lav~~-~~~~~i~~~ 381 (871)
+++++|+|. ...|+.++ ||.+.+|..
T Consensus 283 VNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 283 VNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cceEEEcCCCCCceeecCCCceEEEEEe
Confidence 889999994 44555555 788888864
No 47
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-33 Score=260.36 Aligned_cols=283 Identities=21% Similarity=0.340 Sum_probs=256.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee--------ecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--------VTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 84 (871)
+...-+-|..|||||++|++|+.||-|.+||+.+|+..+.++ .++.+|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 345668899999999999999999999999999997665443 467899999999999999999999999999
Q ss_pred ECCCCcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 85 NYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
.+.+|.+++.|. +|+..|+|+.|+.|+..+++++.|.++++.-+.++ ++...+.+|.+.|....|.+ +++.+++++.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~-dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTD-DGHHIISASS 368 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcC-CCCeEEEecC
Confidence 999999999997 89999999999999999999999999999999998 77888999999999999999 8999999999
Q ss_pred CCcEEEEECCCCCCeEEEec--CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC---cccCeEEEEEc
Q 002881 164 DRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---HTHNVSAVCFH 238 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~~i~~~ 238 (871)
||+|++|+..+.++..+++. ...+|+++...|.... .++++...++|++.+++ |+.++++.. ..+...+.+.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe-h~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE-HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc-eEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 99999999999988877753 4567888888887644 78888899999999987 888888753 34567788899
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 239 p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
|.|.++.+.++|+.++.|...+|++..++..|...+..++-+|..+.+|+-++||.+.+|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999998883
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.1e-33 Score=250.44 Aligned_cols=288 Identities=18% Similarity=0.284 Sum_probs=263.3
Q ss_pred hhhhcccCCCCEEEEEEcC---CCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 7 IKRKLAQRSERVKSVDLHP---SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~---~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
+..+-.||+.+|..++||| +|-+|++++.||.-.+-+-++|..+-+|.+|++.|.....+.+-..-++++.|-+-++
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3445679999999999997 7889999999999999999999999999999999999999999989999999999999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
||.-+|..+..|. |..-|..++|+.|.++|++|+.+..++|+|++........+.+|++.|..+.|.. ..+.+++++.
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSad 163 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeecc
Confidence 9999999998887 7888999999999999999999999999999988777788899999999999998 7788888899
Q ss_pred CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 002881 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 243 (871)
|++|++||.++++.+.++. ...+|+++.++++|+ +++....+.|.+||..+...+...+ ....|.+.+.+|+...
T Consensus 164 d~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF 238 (334)
T ss_pred CCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC---EEEEecCceeEEeccccccceeecc-CccccccccccCCCce
Confidence 9999999999999988886 567899999999997 7777778899999999888887776 4567999999999999
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEE-ecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 244 IITGSEDGTVRIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
+++|++|..++.||..++..+..+ ..|.++|.|+.|+|+|...++|+.||+|++|...
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999999999999999988885 7888999999999999999999999999999544
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4e-33 Score=274.90 Aligned_cols=288 Identities=21% Similarity=0.387 Sum_probs=254.3
Q ss_pred hhhhhcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCC-CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 6 EIKRKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
++...+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.+++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45567889999999999999 888999999999999999876 8999999999999999999999999999999999999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
||++||+++..+.. ...+.|+.|+|++ +.+++|+.|+.|+.||++++ .+.+.+..|-+.|..+.|-+ ++..+++++
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~-~g~rFissS 361 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVD-EGRRFISSS 361 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEcc-CCceEeeec
Confidence 99999999998873 5578999999998 78889999999999999998 67778888999999999999 899999999
Q ss_pred CCCcEEEEECCCCCCeEEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc---eEEEecCccc--CeEEEE
Q 002881 163 LDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS---CVQTLEGHTH--NVSAVC 236 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~--~v~~i~ 236 (871)
.|++++||+.+.+.++... ........|+..+|++. ++++-+.|+.|.+|.+...- ....+.+|.. --..+.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~--~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK--WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCC--eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999887765443 33445667888999887 89999999999999875422 2344566643 356789
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC-CCeEEEEEcCCeEEEe
Q 002881 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVK 298 (871)
Q Consensus 237 ~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~g~~dg~i~i~ 298 (871)
|||||.+|++|+.||.+.+||.++-+++..+..|.+.+..+.|+|. ...+|+++-+|.|.+|
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 9999999999999999999999999999999999999999999997 4678889999999998
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.7e-32 Score=254.79 Aligned_cols=248 Identities=24% Similarity=0.407 Sum_probs=230.6
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
++.+.+.+|.+-|+|+++.|-+.+|++|+.|++|.|||+.+|+...++.+|...++.+++|+-.+|+++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC
Q 002881 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
++.+ +.++.+.+|-+.|.|++.+| .-..+++|+.|.++++||+++...+..+.+|..+|..+.+.|... -+++|+.
T Consensus 222 Le~n-kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp--qvit~S~ 297 (460)
T KOG0285|consen 222 LEYN-KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP--QVITGSH 297 (460)
T ss_pred chhh-hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--ceEEecC
Confidence 9988 77788889999999999999 778999999999999999999999999999999999999987655 4999999
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEE
Q 002881 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 287 (871)
|++|++||++.|+...++..|...|.+++.+|....++++|.| .|+-|++..|..+..+..+...+.+++...|+ .++
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~ 375 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLV 375 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEE
Confidence 9999999999999999999999999999999999999999987 79999999999998899999999999988775 688
Q ss_pred EEEcCCeEEEecCC
Q 002881 288 IGYDEGTIMVKIGR 301 (871)
Q Consensus 288 ~g~~dg~i~i~~~~ 301 (871)
+|+++|.+.+|...
T Consensus 376 ~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWK 389 (460)
T ss_pred EcCCceEEEEEecC
Confidence 99999999998443
No 51
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.5e-29 Score=254.71 Aligned_cols=463 Identities=14% Similarity=0.191 Sum_probs=330.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCce-eEEeeec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM-AKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
....|+++||+.+.+.||++-.+|.|.||++..+-. ...+.++ +..|..++|+ ++..|++.+.+|.|.-||+.+++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 467899999999999999999999999999987643 3455554 5689999999 556788999999999999999999
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
...+....+.|++++.+|.+..+++|++||.+...+...+... ...+...+++|.+++|+| ++..+++|+.||.|++|
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEE
Confidence 9999999999999999999999999999998888887766332 234555678999999999 78889999999999999
Q ss_pred ECCCCCCeEEEe--------cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCC
Q 002881 171 NLGSPDPNFTLD--------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (871)
Q Consensus 171 d~~~~~~~~~~~--------~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~ 242 (871)
|..++....... ....-|+++.+-.++ .|++|.+.|+|.+||...+..++.+..|...|.+++..++++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecC---cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 999887665221 122346677776555 599999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCeEEE----EEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEE-----EeCCCc
Q 002881 243 IIITGSEDGTVRIWHATTYRLEN----TLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS-----MDNSGK 313 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~-----~~~~~~ 313 (871)
+++++|.|+.|.-|...+....+ ....|...+.+++..++ .+++|+.|+.+.+-...+.+... ..+.+.
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~ 336 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASD 336 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccc
Confidence 99999999999999877664322 23356677899998877 89999999999885433311110 111111
Q ss_pred EEEEeecceEEEEEeec--Ccceec----cCCCeeeeee-eecCccccCCceEEECCCCCEEEEEcCCcEEEEEeeccc-
Q 002881 314 IIWAKHNEIQTVNIKSV--GADYEV----TDGERLPLAV-KELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR- 385 (871)
Q Consensus 314 ~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~- 385 (871)
. .....+-+.+.++.. ...|.+ ..|+.-...+ +-.......+++-+.||+|+.+++++-.++.+|......
T Consensus 337 ~-v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~ 415 (691)
T KOG2048|consen 337 R-VSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPN 415 (691)
T ss_pred e-eecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcc
Confidence 1 111122222222211 111111 1111111111 111122335678899999999999998899999776522
Q ss_pred ---------ccCcCceeEEEEecCCcEEEEec--CCeEEEeecc---cccceeeec----------CccceeeecCcEEE
Q 002881 386 ---------NRSFGSALEFVWSSDGEYAVRES--SSKIKIFSKN---FQEKRSVRP----------TFSAERIYGGTLLA 441 (871)
Q Consensus 386 ---------~~~~~~~~~~~~s~~~~~~~~~~--~~~i~i~~~~---~~~~~~~~~----------~~s~~~i~~~~~La 441 (871)
+.....+..+.|+-++..++..+ ...+.+++.+ +++...+.. ..+++ |+++|
T Consensus 416 vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd----G~yia 491 (691)
T KOG2048|consen 416 VKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD----GNYIA 491 (691)
T ss_pred eeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC----CCEEE
Confidence 11223556778887776554444 4566666543 222222221 34555 99999
Q ss_pred EEeCC-eEEEEeccCCcE---EEEEEcceeEEEEcC-CCCEEEEEeCCeEEE
Q 002881 442 MCSND-FICFYDWAECRL---IRRIDVTVKNLYWAD-SGDLVAIASDTSFYI 488 (871)
Q Consensus 442 ~~~~~-~v~~~d~~~~~~---~~~~~~~i~~i~~s~-~~~~la~~~~~~~~~ 488 (871)
+.+.. .|.+|++++++. ..++...++.+.++| +-..|+++..++-++
T Consensus 492 a~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~ 543 (691)
T KOG2048|consen 492 AISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVF 543 (691)
T ss_pred EEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEE
Confidence 98877 999999998763 224456889999994 445566665555443
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.6e-31 Score=244.85 Aligned_cols=284 Identities=19% Similarity=0.333 Sum_probs=237.9
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN-TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~ 128 (871)
+..+.+|++.|..+.|+|+|.+|++|+.|..|.+|+.. ..+....+++|++.|..+.|.++++.|++++.|.++..||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 34566899999999999999999999999999999954 44556778899999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC
Q 002881 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (871)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d 208 (871)
+++ +....+.+|...|.++.-+..+..++.+++.||++++||+++..++.++. .+.+++++.|...+++ +.+|+-|
T Consensus 120 ~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~q--v~sggId 195 (338)
T KOG0265|consen 120 ETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQ--VISGGID 195 (338)
T ss_pred ccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccc--eeecccc
Confidence 999 77788889999999988555567788999999999999999888777664 4677899999988884 9999999
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eEEEEEecCC----ccEEEEEEe
Q 002881 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL----ERVWAIGYM 280 (871)
Q Consensus 209 g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~----~~i~~i~~~ 280 (871)
+.|++||++.+....++.+|..+|+.+..+|+|.++.+-+.|.++++||++.. +++..+..+. .....++|+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 99999999999999999999999999999999999999999999999998753 3455555543 235678999
Q ss_pred eCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEE
Q 002881 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (871)
Q Consensus 281 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (871)
|+++.+.+|+.|..+++|..... ++++ .++.+...+..+.
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r---------~~ly-------------------------------klpGh~gsvn~~~ 315 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSR---------RILY-------------------------------KLPGHYGSVNEVD 315 (338)
T ss_pred CCCCccccccccceEEEeecccc---------cEEE-------------------------------EcCCcceeEEEee
Confidence 99999999999999999843321 1111 1234444566888
Q ss_pred ECCCCCEEEEEc-CCcEE
Q 002881 361 HNPNGRFVVVCG-DGEYI 377 (871)
Q Consensus 361 ~s~~g~~lav~~-~~~~~ 377 (871)
|+|...++..|+ |.+++
T Consensus 316 Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 316 FHPTEPIILSCSSDKTIY 333 (338)
T ss_pred ecCCCcEEEEeccCceeE
Confidence 999888888777 44444
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=263.52 Aligned_cols=272 Identities=25% Similarity=0.442 Sum_probs=240.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 93 (871)
.+..|.|+.+. ...+++|..|++|+|||..+....+.+.+|.+.|.|+.|.. ..|++|+.|.+|+|||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 35678998886 44589999999999999999999999999999999999954 589999999999999999999999
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
++-.|.+.|..+.|+. .++++++.|.++.+||+.+.. .+.+.+.+|...|..+.|+ .+++++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEe
Confidence 9999999999999984 589999999999999998652 3345678999999999996 46999999999999999
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCC
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg 251 (871)
+.+.+.+.++.+|+.+|.|+++. +. ++++|++|.+|++||+..|.++..+++|..-|.++.|.. +.+++|+.||
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr--~r--lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDG 420 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYR--DR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDG 420 (499)
T ss_pred ccceeeehhhhcccccceehhcc--Ce--EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccc
Confidence 99999999999999999999983 33 899999999999999999999999999999999999975 5799999999
Q ss_pred cEEEEeCCCCeE---------EEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCC
Q 002881 252 TVRIWHATTYRL---------ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (871)
Q Consensus 252 ~v~iwd~~~~~~---------~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (871)
+|++||+.++.. +.++..|.++|..+.| |...+++++.|.+|.+|....
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 999999987642 3445567789999998 567899999999999985443
No 54
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-32 Score=257.33 Aligned_cols=251 Identities=28% Similarity=0.511 Sum_probs=237.3
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC-CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
.++.+.++||.+.|.+|+|+..|++|++++.|=.+.+||.++ .+.++.+.+|+..|.++.|-|.|.+|++++.|.+|+.
T Consensus 140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA 219 (406)
T ss_pred hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence 356788999999999999999999999999998899999887 5677788899999999999999999999999999999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecC----------
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK---------- 153 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~---------- 153 (871)
|++.++-++.++.+|+..|..++.+.||..+++|+.|.++++|-+.++ .+...+..|..+|.+++|.|.
T Consensus 220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhcc
Confidence 999999999999999999999999999999999999999999999987 778889999999999999872
Q ss_pred ----CCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc
Q 002881 154 ----DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 154 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 229 (871)
++.++.+++.|++|++||+.++.++.++.+|...|..++|+|.|+ ||+++.+|+++++||++++++..++..|.
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk--yi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK--YILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe--EEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 236899999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred cCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 230 HNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
.-++++.|+.+.+++++|+-|.++++|..
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999963
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.4e-30 Score=248.99 Aligned_cols=276 Identities=27% Similarity=0.442 Sum_probs=240.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCCc
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYNTMD 90 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~~ 90 (871)
|.+-|.++... ++++++|++||.++||| ..|+..+.+.+|.+++..++|..... .+++++.|.++++|.++.++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 77778877777 77999999999999999 67899999999999999999865444 59999999999999988765
Q ss_pred EE----EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------------------------ceEEEEeecCC
Q 002881 91 KV----KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG------------------------WMCTQIFEGHS 142 (871)
Q Consensus 91 ~~----~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~------------------------~~~~~~~~~~~ 142 (871)
.. +.-.+|...|.++...++|..+++|+.|..|.||+..+. +.....+.+|.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 42 333599999999999999999999999999999993221 23445678999
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc--
Q 002881 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-- 220 (871)
Q Consensus 143 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-- 220 (871)
.+|.++.|++ ...+++++.|.+|+.||+.++.....+. ....++|+.++|..+ +|++|+.|..+++||.+++.
T Consensus 261 ~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~--Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 261 EPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK--LLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred cceeeEEEcC--CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc--eeeecCCCCceeecCCCCCCCc
Confidence 9999999996 7899999999999999999998877766 456789999999766 89999999999999999754
Q ss_pred -eEEEecCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCe-EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 221 -CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 221 -~~~~~~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
..+++.+|.+.|.++.|+|... .|++|+.|+++++||+++-+ ++..+..|.+.|.++.|. ++..|++|+.|..+++
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence 4678899999999999999765 78899999999999999877 899999999999999996 4668999999999998
Q ss_pred e
Q 002881 298 K 298 (871)
Q Consensus 298 ~ 298 (871)
.
T Consensus 415 ~ 415 (423)
T KOG0313|consen 415 F 415 (423)
T ss_pred e
Confidence 6
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2e-30 Score=256.58 Aligned_cols=277 Identities=21% Similarity=0.401 Sum_probs=242.3
Q ss_pred CCCEEEEEEcCCCCE-EEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 002881 15 SERVKSVDLHPSEPW-ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~-la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 93 (871)
...|.+++|+|..++ +|+++ .-.|.||+..+....+++...+..|.++.|-.||.++++|+..|.|+|||+++...++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 357999999998875 45544 6689999998888888888788899999999999999999999999999988877888
Q ss_pred EEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002881 94 VFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (871)
.+.+|..++..+.|+|++ ..+++|++|+.+++||+.+.. ....+.+|+.+|.|.+|+|..+.++++|+.||.|++||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 899999999999999975 467788889999999999984 466788999999999999977889999999999999999
Q ss_pred CCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-EEEecCcccCeEEEEEcCCCCEEEEEECCC
Q 002881 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg 251 (871)
+.......--.|..+|..+.+-|+|. .+++++ ...|++||+.+|.. +..+..|...|+|+++..++..|++||-||
T Consensus 184 R~~~~~v~elnhg~pVe~vl~lpsgs--~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELNHGCPVESVLALPSGS--LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEecCCCceeeEEEcCCCC--EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 98843333345899999999999987 466555 56899999996554 444455999999999999999999999999
Q ss_pred cEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 252 TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
.|++||+.+.+.+..+..+ ++|.+++.+|+++.+++|..+|.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEecccceeee
Confidence 9999999999999999887 89999999999999999999999876
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=6.7e-30 Score=232.26 Aligned_cols=279 Identities=17% Similarity=0.263 Sum_probs=247.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEE--eeecCCCEEEEEEeCC-CCEEEEEeCCCeEEEE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVAR-KQWVVAGADDMFIRVY 84 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 84 (871)
.+.+.+|...|.+++|+-+|..|++|+.|+++.+|+++.....+. ..+|.+.|-.++|+|. .+.+++++.|.+|++|
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 377889999999999999999999999999999999988755543 4578889999999884 5788999999999999
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
|..++++........+.| .+.|+|+|.++++++.|..|...|.++. +..... .....+.-++|+. ++++|+..+..
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~~-~~~~e~ne~~w~~-~nd~Fflt~Gl 168 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNEE-QFKFEVNEISWNN-SNDLFFLTNGL 168 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeehh-cccceeeeeeecC-CCCEEEEecCC
Confidence 999999998887655544 4899999999999999999999999876 333322 2345577889985 78888888888
Q ss_pred CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l 244 (871)
|+|.|....+-+++..++.|.....||.|+|+|+ ++++|+.|-.+.+||+...-|++.+..+.-+|..++|+.+|++|
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 9999999999999999999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred EEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCC
Q 002881 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg 293 (871)
+++|+|..|-|=+..+|..++.++.. ++..+++|+|...+||.+++|.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eccCccceEEeEecccCCeEEEeecc-CCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999988765 7889999999999999988774
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4.6e-29 Score=260.40 Aligned_cols=245 Identities=31% Similarity=0.539 Sum_probs=221.6
Q ss_pred EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002881 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (871)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~ 130 (871)
+++.+|..+|++++|+|++++|++++.||.|.+|++.+++....+..|...+..+.|+|+++++++++.||.|.+||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888889999999999999999999999999999999998
Q ss_pred CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCe
Q 002881 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (871)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~ 210 (871)
+ .....+..|...+.++.|+| +++++++++.+|.|.+||+++++....+..|...+.++.|+|++. ++++++.+|.
T Consensus 83 ~-~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~ 158 (289)
T cd00200 83 G-ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGT 158 (289)
T ss_pred c-cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEEEcCCCc
Confidence 6 45566678888999999999 577888888899999999998888888888889999999999855 6777777999
Q ss_pred EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 211 i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
|++||+++++.+..+..|...+.++.|+|+++.+++++.||.|++||+.+++....+..+...+.++.|+|++..+++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99999998888888888988999999999999999999999999999999888888877778999999999988888888
Q ss_pred cCCeEEEec
Q 002881 291 DEGTIMVKI 299 (871)
Q Consensus 291 ~dg~i~i~~ 299 (871)
.+|.+.+|.
T Consensus 239 ~~~~i~i~~ 247 (289)
T cd00200 239 EDGTIRVWD 247 (289)
T ss_pred CCCcEEEEE
Confidence 899999873
No 59
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=252.22 Aligned_cols=720 Identities=16% Similarity=0.144 Sum_probs=436.3
Q ss_pred ChhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee--ecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002881 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--VTELPVRSAKFVARKQWVVAGADDMF 80 (871)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 80 (871)
.++.+.+++.||++.|.-+.|+...+.|-+...+|.|.||-+-.|....... ..++.|.+++|+.+|+.|+..-.||.
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa 138 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA 138 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC
Confidence 4567788999999999999999999999999899999999987776443332 24567999999999999999999999
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE----------EEEeecCCcceEEEEE
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC----------TQIFEGHSHYVMQVTF 150 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~v~~~~~ 150 (871)
|.|=.++..+. ..-.-.......+.|++|.+.++.+-.+|.+.+||.+.+... ...+......|..+.|
T Consensus 139 vIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 139 VIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEEEeecccee-cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 98888764332 211111223457899999999999999999999997754211 1122333445777888
Q ss_pred ec-------CCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC---------CeEEEE
Q 002881 151 NP-------KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD---------HTAKVW 214 (871)
Q Consensus 151 ~p-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d---------g~i~v~ 214 (871)
.. .+...|+++..+|.+.+..-.+......+. ..-.+..+.|+++|. ++++++.+ +.|.+|
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~--vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGA--VLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCc--EEEEccCcccccCccccceEEEe
Confidence 52 256689999999999887655443333333 236778899999988 78887754 357777
Q ss_pred ECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--------EEEEEecCCccEEEEE--------
Q 002881 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--------LENTLNYGLERVWAIG-------- 278 (871)
Q Consensus 215 d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~i~~i~-------- 278 (871)
..- |..+.+++.....|++++|-..|-.++.+- |+.|.+=+++..- .+...+....+-.++.
T Consensus 295 sp~-G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 295 SPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred ccc-hhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 754 888889998999999999999887776654 6777776655311 1111222222222222
Q ss_pred -------------EeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeee
Q 002881 279 -------------YMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLA 345 (871)
Q Consensus 279 -------------~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (871)
++.+--.|+.-.++|.+.-.. .+...+ .+.+..+=+ +-|..+...
T Consensus 373 k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s-------~le~~~--------~~~~l~LCN-------SIGT~lD~k 430 (1189)
T KOG2041|consen 373 KTVKTVTHFENMAFYREHCVLINRQDDGVIPEYS-------TLENRS--------RVYFLQLCN-------SIGTSLDYK 430 (1189)
T ss_pred hhhhhhcceeehheecccEEEEeccccCCCcchh-------hhhccc--------ceEEEeeec-------ccCCcCCCC
Confidence 222211222222222221100 000000 000110000 001111100
Q ss_pred eeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeeccc------------ccC-------------------------
Q 002881 346 VKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR------------NRS------------------------- 388 (871)
Q Consensus 346 ~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~------------~~~------------------------- 388 (871)
. .+.. -.-..-+|.++++++...+.+|.....+ .+.
T Consensus 431 y-----tdir--P~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~ 503 (1189)
T KOG2041|consen 431 Y-----TDIR--PKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGS 503 (1189)
T ss_pred c-----ceee--eeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccC
Confidence 0 1111 2223446778889999999999543221 000
Q ss_pred cCceeEEEEecCCcEEEEecCCeEEEeecccccceeeec-Cccceeee---cCcEEEEEeCC-eEEEEecc---CCcEEE
Q 002881 389 FGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP-TFSAERIY---GGTLLAMCSND-FICFYDWA---ECRLIR 460 (871)
Q Consensus 389 ~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~s~~~i~---~~~~La~~~~~-~v~~~d~~---~~~~~~ 460 (871)
..++..++. .+.-+++...+|.|+-|+++......-.+ +-+...+. +...||+.+-- .+.|.|+. ++..+.
T Consensus 504 ~DpICAl~~-sdk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~ 582 (1189)
T KOG2041|consen 504 KDPICALCI-SDKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLK 582 (1189)
T ss_pred CCcceeeee-cceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceee
Confidence 011111211 22223344446778877755432211111 11111111 35567766644 77777775 344433
Q ss_pred EE---E-cceeEEEEcCCC-CEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEeccEE
Q 002881 461 RI---D-VTVKNLYWADSG-DLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCF 535 (871)
Q Consensus 461 ~~---~-~~i~~i~~s~~~-~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~ 535 (871)
-+ + ..|+.+.|..|. .++|...+.+.++++ ..+..++++..|.++.|+.+ .|+++..+ -+
T Consensus 583 ~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr--------gndpeEp~s~sGyIc~FedL-----eitsVlld--~I 647 (1189)
T KOG2041|consen 583 LIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR--------GNDPEEPSSVSGYICLFEDL-----EITSVLLD--KI 647 (1189)
T ss_pred eeehhhhhhhhhhhhccCCchHHhhhhhceEEEec--------CcCccccccccceEEEeece-----EEEEEEHh--hH
Confidence 22 1 379999999654 566777888888876 33445677788898888876 23333322 23
Q ss_pred EEEccCCeEEEEECCeEeEEEecccceEEEEEeeeCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhCCCCC
Q 002881 536 IYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIP 615 (871)
Q Consensus 536 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~ 615 (871)
+-+++.....+.+... +..++..+.++..+--+....++.++.....|.+. ...++.+.+++.|+..+-...
T Consensus 648 l~~pE~pnk~~ii~~~---ikslrD~~~Lve~vgledA~qfiEdnPHprLWrll-----Ae~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 648 LLTPENPNKTCIIEVM---IKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLL-----AEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred hcCcCCCCcceEEEEE---ehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHH-----HHHHHHHHhhhhHhhhhhhhc
Confidence 3344444444443222 23333322221111112333344455444444332 345555666776654442222
Q ss_pred c---------------ch--hHHHHHHHHhCCChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCC-------hHHH
Q 002881 616 K---------------EH--HNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQS-------ESKW 671 (871)
Q Consensus 616 ~---------------~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~-------~~~w 671 (871)
. .. ...+..|....+..++....+...+.+.+|++++|+|-..+++++.... +..|
T Consensus 720 dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~ 799 (1189)
T KOG2041|consen 720 DYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAF 799 (1189)
T ss_pred cccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHH
Confidence 1 11 1233344333333333333344456778999999999999999987432 3467
Q ss_pred HHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHh--------------cCCHHHHHHHHHHHHHcCCchHHHHHHHHcC
Q 002881 672 KQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSS--------------LGDAEGISKLASLAKEQGKNNVAFLCLFMLG 737 (871)
Q Consensus 672 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g 737 (871)
+.+|+......+++.|.++|.+++|.+++...+.. ..|.+.+..++++....|...+|.++|+..+
T Consensus 800 r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 800 RNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 77777777777777777777766666555443333 4556677788999999999999999999999
Q ss_pred CHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHHhhhh
Q 002881 738 KLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV 781 (871)
Q Consensus 738 ~~~~a~~l~~~~~~~~~A~~la~~~~~~~~~~~~~~~~~~L~~~ 781 (871)
+.+.|+..+..++||.+|+|+|+.+...++..++.+++.+|...
T Consensus 880 ~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~ 923 (1189)
T KOG2041|consen 880 LPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLAD 923 (1189)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998888777544
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-28 Score=228.55 Aligned_cols=290 Identities=18% Similarity=0.284 Sum_probs=247.6
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC--CCeE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFI 81 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i 81 (871)
+++..+.+..-.++|.++.|+++|.+|++++.|.+++|||..+++.++++..++-.|..++|....+.++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45666777778899999999999999999999999999999999999999988888999999888888887776 8899
Q ss_pred EEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
+..++.+.+.++.|.+|...|.+++.+|-+..+++++.|++|++||++.. .+...+..... ..++|+| .+-++|++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~--pi~AfDp-~GLifA~~ 158 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGR--PIAAFDP-EGLIFALA 158 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEecCCC--cceeECC-CCcEEEEe
Confidence 99999999999999999999999999999999999999999999999966 44444433333 4578999 78899999
Q ss_pred ECCCcEEEEECCCC--CCeEEEe---cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCe---E
Q 002881 162 SLDRTIKIWNLGSP--DPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV---S 233 (871)
Q Consensus 162 ~~dg~i~i~d~~~~--~~~~~~~---~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v---~ 233 (871)
.....|++||+++. .|..++. ......+.+.|+|+|+ +++.++..+.+++.|.-+|..+.++..+...- .
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK--~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK--SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC--EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 88889999999874 3444443 3467789999999998 79999999999999999999988888765542 5
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-CCccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 234 ~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
+.+|.|+++++++|+.||+|.+|+++++..+..+.. +.+++.++.|+|.-..+++ .+..+.+|...
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s--a~s~l~fw~p~ 303 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS--ASSNLVFWLPD 303 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee--cCceEEEEecc
Confidence 788999999999999999999999999999998888 4788999999998655554 45567777544
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=224.91 Aligned_cols=245 Identities=20% Similarity=0.321 Sum_probs=219.5
Q ss_pred eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002881 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~ 128 (871)
..+.+..+.++|+.+.|+-+|++.++++.|.+|++||...+..++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC--CCCeEEEecCCCCeeEEEEeecCCcCEEEEEe
Q 002881 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (871)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~ 206 (871)
.++ +..+.+.+|...|..+.|+. +...+++|+.|.++++||.++ .+|++.+......|.++..+. . .|++|+
T Consensus 89 ~TG-kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--h--eIvaGS 162 (307)
T KOG0316|consen 89 NTG-KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--H--EIVAGS 162 (307)
T ss_pred ccC-eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--c--EEEeec
Confidence 999 78888999999999999998 889999999999999999976 467888888888999988753 3 599999
Q ss_pred CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEE--EEEEeeCCC
Q 002881 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVW--AIGYMKSSR 284 (871)
Q Consensus 207 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~--~i~~~~~~~ 284 (871)
.||+++.||++.|+..... ...+|++++|+++++..++++.|+++++.|-.+|+++..+.+|.+.-+ .++++....
T Consensus 163 ~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 9999999999998875544 456899999999999999999999999999999999998888865433 456667788
Q ss_pred eEEEEEcCCeEEEecCC
Q 002881 285 RIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 285 ~l~~g~~dg~i~i~~~~ 301 (871)
.++.|++||.+.+|..-
T Consensus 241 hV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLV 257 (307)
T ss_pred eEEeccCCceEEEEEec
Confidence 99999999999998443
No 62
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=4.5e-27 Score=246.80 Aligned_cols=464 Identities=16% Similarity=0.241 Sum_probs=343.3
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c
Q 002881 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-D 90 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~ 90 (871)
..+.+.|+|++=+.+ ++.+|. .+.|.+|- ........+..|...|.-+. |=|.+++++..++.+.||+..++ +
T Consensus 73 ~~lp~~I~alas~~~--~vy~A~-g~~i~~~~-rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~ 146 (910)
T KOG1539|consen 73 KPLPDKITALASDKD--YVYVAS-GNKIYAYA-RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQE 146 (910)
T ss_pred CCCCCceEEEEecCc--eEEEec-CcEEEEEE-ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccc
Confidence 457788998886644 455554 45788887 33355566777776776554 56889999999999999998874 1
Q ss_pred E----EEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 91 K----VKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 91 ~----~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
. ....+...+.|+++ +||. -+.++.|+.+|.+.+|+++++ +....+.++...|+++.-+| --..++.|..+
T Consensus 147 e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~ 223 (910)
T KOG1539|consen 147 ELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSP-ALDVVAIGLEN 223 (910)
T ss_pred cccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCC-cceEEEEeccC
Confidence 1 12223333337766 4554 356899999999999999998 78888899999999999999 78899999999
Q ss_pred CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-CcccCeEEEEEcCCCCE
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPI 243 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~i~~~p~~~~ 243 (871)
|+|.+++++.++.+.+++...++|++++|..+|+. ++++|+..|.+.+||+...+.+..+. .|.+.|....|.|..+.
T Consensus 224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred ceEEEEEcccCcEEEEEEccccceeEEEeccCCCe-eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence 99999999999999999876799999999998874 88999999999999999887766665 78899999999999999
Q ss_pred EEEEECCCcEEEEeCCC--C--eEEEEEecCCccEEEEEEe-eCCCeEEEEEcCCeEEEec-------------------
Q 002881 244 IITGSEDGTVRIWHATT--Y--RLENTLNYGLERVWAIGYM-KSSRRIVIGYDEGTIMVKI------------------- 299 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~~--~--~~~~~~~~~~~~i~~i~~~-~~~~~l~~g~~dg~i~i~~------------------- 299 (871)
+++.+.|+.+++|=..+ | +.++.-.+|..+..++.|. .+|..+..++.|++++.+.
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 99999999999885543 3 4667777888899999988 6788899999999776531
Q ss_pred ----------CCCcceEEEeCCC--cEEEE-----eec--ceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEE
Q 002881 300 ----------GREEPVASMDNSG--KIIWA-----KHN--EIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (871)
Q Consensus 300 ----------~~~~~~~~~~~~~--~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (871)
...+++..+...+ ...|. ..+ +..+.+..+. .-....+..+.+.......++++
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~-------~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK-------TSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc-------ccccEEecCccccccCcceEEEE
Confidence 1123344443211 11111 111 1222222211 11112233333344556778999
Q ss_pred ECCCCCEEEEEc-CCcEEEEEeeccc--------ccCcCceeEEEEecCCcEEEEec-CCeEEEeeccc-----------
Q 002881 361 HNPNGRFVVVCG-DGEYIIYTALAWR--------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF----------- 419 (871)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~~~~~~~--------~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~----------- 419 (871)
.++.|++..+|. .|.|-+|+.+... +.+.+.++.++....++.+++++ +|-+++|+...
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~ 535 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS 535 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC
Confidence 999999999987 8999999887653 34456788888877777777666 89999998321
Q ss_pred -------------------------------------ccce-eee-cCccceeeecCcEEEEEeCC-eEEEEeccCCcEE
Q 002881 420 -------------------------------------QEKR-SVR-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLI 459 (871)
Q Consensus 420 -------------------------------------~~~~-~~~-~~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~ 459 (871)
.++. .+. ..|||| |++|++++.| +|++||+.++.++
T Consensus 536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D----grWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD----GRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC----CcEEEEeecCCcEEEEeccCccee
Confidence 1110 111 167777 9999999998 9999999999998
Q ss_pred EEEE--cceeEEEEcCCCCEEEEEeCC-eEEEEEecHHHH
Q 002881 460 RRID--VTVKNLYWADSGDLVAIASDT-SFYILKYNRDVV 496 (871)
Q Consensus 460 ~~~~--~~i~~i~~s~~~~~la~~~~~-~~~~l~~~~~~~ 496 (871)
-.+. .++.++.+||+|.+||++..+ .-+++|-|+-.+
T Consensus 612 D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 612 DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred eeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHh
Confidence 7665 588999999999999999876 566778776543
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-29 Score=230.37 Aligned_cols=284 Identities=14% Similarity=0.223 Sum_probs=244.5
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
.+.||..+++.+.++.+|.+|.+++.|.+..||-..+|+.+-++.+|.+.|.|+..+.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCC------ceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
+.+..++. ..+|..+.|+++|++++.++++ +.|.++|++.. ..+...+..+.+.++.+-|.| -+..+
T Consensus 85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~i 162 (327)
T KOG0643|consen 85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETI 162 (327)
T ss_pred cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEE
Confidence 99998874 5689999999999988877653 68999999832 233455566778899999999 88999
Q ss_pred EEEECCCcEEEEECCCCCC-eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 002881 159 ASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (871)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~ 237 (871)
++|..||.|.+||++++.. +...+.|...|+.++++++.. ++++++.|.+-++||..+-+.+.++. ...+|.+.++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T--~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT--YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc--eEEecccCccceeeeccceeeEEEee-ecccccceec
Confidence 9999999999999998754 445577889999999999988 89999999999999999999888887 5678999999
Q ss_pred cCCCCEEEEEECCCcE--------------EEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 238 HPELPIIITGSEDGTV--------------RIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 238 ~p~~~~l~~~~~dg~v--------------~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+|....++.|+.-.-. ++|++-..+.+..++.|-++|.+++++|+|+..++|++||.+++.
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9988877776532221 122222223455678899999999999999999999999999984
No 64
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=272.24 Aligned_cols=250 Identities=31% Similarity=0.543 Sum_probs=225.2
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeC-CCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNY-QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
..+.+.+|...|.+++|+|++.++++++.|++|+|||+ ..+..++++.+|...|++++|+|+|+.+++|+.|++|+|||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 55667899999999999999999999999999999999 55689999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce-EEEEeecCCcc--eEEEEEecCCCCEEEEEE
Q 002881 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHY--VMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~ 162 (871)
++++++...+.+|.+.|++++|++++.+|++++.||.|++||+.++.. +...+.++... ++++.|+| ++.++++++
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~ 353 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSAS 353 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEec
Confidence 999999999999999999999999999999999999999999999843 34555665554 99999999 899999999
Q ss_pred CCCcEEEEECCCCCCeEEEecCCCCeeEE---EEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc-ccCeEEEEEc
Q 002881 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCV---DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFH 238 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i---~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~i~~~ 238 (871)
.|+.+++||+..+.....+.+|...+.|+ ..++.+. ++++|+.|+.|.+|++.++..+..+.+| ...+..+.++
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~ 431 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK--LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH 431 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC--eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC
Confidence 99999999999999999988888764333 2333444 8999999999999999999999999999 8899999999
Q ss_pred CCCCEEEEEE--CCCcEEEEeCC
Q 002881 239 PELPIIITGS--EDGTVRIWHAT 259 (871)
Q Consensus 239 p~~~~l~~~~--~dg~v~iwd~~ 259 (871)
|..+++++++ .|+.+++|...
T Consensus 432 ~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 432 PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCcCeeeecCcCCCceEEEecCC
Confidence 9999999998 78899999743
No 65
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.9e-28 Score=250.28 Aligned_cols=436 Identities=14% Similarity=0.236 Sum_probs=302.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEE--cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC--CCeEEEEEC
Q 002881 11 LAQRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIRVYNY 86 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~ 86 (871)
+..|..++++++|||+|+|+|+|- ..-.++||++..-..+..+..|+-.|+|++|+|.++++++.+. |..|.+|++
T Consensus 74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dW 153 (1080)
T KOG1408|consen 74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDW 153 (1080)
T ss_pred ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhh
Confidence 345667999999999999999985 4567999999998888999999999999999999999997665 678888877
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------------------------------
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----------------------------------- 131 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------- 131 (871)
+...... -+.-...|..++|+.+|.|+++++. ..|++|.++.+
T Consensus 154 r~N~~~a-snkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 154 RVNSSGA-SNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hhccccc-ccccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 5321111 1122344555666666655555443 35555554422
Q ss_pred -----------------------------------------------------------ceEEEEeecC-----------
Q 002881 132 -----------------------------------------------------------WMCTQIFEGH----------- 141 (871)
Q Consensus 132 -----------------------------------------------------------~~~~~~~~~~----------- 141 (871)
.-....-..|
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q 311 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQ 311 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccc
Confidence 0000000000
Q ss_pred ------------CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCe---EEEecCCCCeeEEEEeecC---------
Q 002881 142 ------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGG--------- 197 (871)
Q Consensus 142 ------------~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~--------- 197 (871)
-.....+.|+| ....+.+...|..++|||++....+ ..+-.|...|+.+.-.|..
T Consensus 312 ~~~~~s~~~~a~fPD~IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl 390 (1080)
T KOG1408|consen 312 PEPKNSESSPAIFPDAIACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL 390 (1080)
T ss_pred ccccccccCcccCCceeEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccC
Confidence 01134566777 5678888889999999999875543 3344577777777665521
Q ss_pred CcCEEEEEeCCCeEEEEECCCCc---eEE----------------------------------EecCcccCeEEEEEcCC
Q 002881 198 DKPYLITGSDDHTAKVWDYQTKS---CVQ----------------------------------TLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 198 ~~~~l~~~~~dg~i~v~d~~~~~---~~~----------------------------------~~~~~~~~v~~i~~~p~ 240 (871)
....++++++|++|++|++..+. ..+ ..-.....+.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 01158999999999999987521 100 00012335899999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC---CCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEE
Q 002881 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS---SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWA 317 (871)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 317 (871)
|++|++|..-|++++|++...+....+..|...|.++.++.. .++||+++.|..|+++.... ..
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r----------ny--- 537 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR----------NY--- 537 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc----------cc---
Confidence 999999999999999999999988899999999999999863 57889999999988852110 00
Q ss_pred eecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCC--CEEEEEcCCcEEEEEeec----c-------
Q 002881 318 KHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG--RFVVVCGDGEYIIYTALA----W------- 384 (871)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~lav~~~~~~~i~~~~~----~------- 384 (871)
.....+..+...++++.|.-+| ..++.|+-.+.+.|+... .
T Consensus 538 --------------------------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t 591 (1080)
T KOG1408|consen 538 --------------------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHT 591 (1080)
T ss_pred --------------------------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccc
Confidence 0011223344456778877776 455556544444443322 1
Q ss_pred cccCcCceeEEEEecCCcEEEEec-CCeEEEeeccccc-ceeeec-----------CccceeeecCcEEEEEeCC-eEEE
Q 002881 385 RNRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE-KRSVRP-----------TFSAERIYGGTLLAMCSND-FICF 450 (871)
Q Consensus 385 ~~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~-~~~~~~-----------~~s~~~i~~~~~La~~~~~-~v~~ 450 (871)
.....+....+...|+.+++++.. |..|+||+++... .+.++. ...| .|-+||+.-.| +++|
T Consensus 592 ~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP----SgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 592 QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP----SGIYLATSCSDKTLCF 667 (1080)
T ss_pred cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC----CccEEEEeecCCceEE
Confidence 112235567888889999988877 8999999976432 233332 2233 37788888777 9999
Q ss_pred EeccCCcEEEEEEc---ceeEEEEcCCCCEEEEEeCCeEEEEEec
Q 002881 451 YDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILKYN 492 (871)
Q Consensus 451 ~d~~~~~~~~~~~~---~i~~i~~s~~~~~la~~~~~~~~~l~~~ 492 (871)
||.-+|+.+.+..+ -|+.+.|.+|.++|+.++.|+.+++|.-
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 99999999988664 6899999999999999999999888843
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.9e-28 Score=285.11 Aligned_cols=259 Identities=17% Similarity=0.279 Sum_probs=218.8
Q ss_pred CCeEEEEeCCCCceeEEe-----eecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----c----EEEEEccCCCCe
Q 002881 36 SGTVCIWNYQSQTMAKSF-----EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----D----KVKVFEAHTDYI 102 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~~~~~i 102 (871)
+|.+++|+..+......+ ..|...|.+++|+|+|+++++|+.|+.|+||+..+. . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677888988765554433 347889999999999999999999999999997542 1 122233 34679
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE
Q 002881 103 RCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (871)
Q Consensus 103 ~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 181 (871)
.+++|+|. +.+|++++.||.|++||+.++ .....+.+|...|++++|+|.++.+|++|+.||+|++||++++.....+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 99999874 789999999999999999987 6667788999999999999867889999999999999999988887777
Q ss_pred ecCCCCeeEEEEeec-CCcCEEEEEeCCCeEEEEECCCCc-eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 182 DAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 182 ~~~~~~i~~i~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
..+ ..+.++.|++. +. ++++|+.||.|++||++++. ++..+.+|...|+++.|. ++..+++++.|++|++||+.
T Consensus 615 ~~~-~~v~~v~~~~~~g~--~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 615 KTK-ANICCVQFPSESGR--SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ecC-CCeEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 644 67899999654 44 89999999999999998765 567788999999999997 67799999999999999987
Q ss_pred C------CeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 260 T------YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 260 ~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
. +..+..+..|...+..++|+|++++|++|+.||.+.+|..
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 4 3567788888888999999999999999999999999853
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=249.80 Aligned_cols=285 Identities=21% Similarity=0.351 Sum_probs=249.4
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
.....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..++|+.+.|.+++..+++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 4456778899999999999998889999999999999987765 66778888899999999999999999999999999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
|++++.+...++.+|++.|+++.|......+++|+.|.+|++||+.........+.+ ..+..+..+ ...+++|..
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~---~~~~~SgH~ 320 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS---ISDVISGHF 320 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec---ceeeeeccc
Confidence 999999999999999999999999988777999999999999999987333333333 335555554 467899999
Q ss_pred CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc----ccCeEEEEEcC
Q 002881 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH----THNVSAVCFHP 239 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~v~~i~~~p 239 (871)
|++|++||.++..+......+. .|+++..++++. -+++++.|.++.++|+++.....++... ....+.+.|||
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~--~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL--ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCc-ceeeEeeccCCe--EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 9999999999999888877654 899999999988 4888899999999999998887777542 33588999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCcc--EEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLER--VWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
++.|+++||.||.|+||++.++++...+...... |++++|+|.|..+++++.++.+.+|
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999999988876555 9999999999999999999999887
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.9e-27 Score=244.57 Aligned_cols=478 Identities=19% Similarity=0.289 Sum_probs=325.1
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCC---EEEEEEcCCeEEEEeCCCCceeE--EeeecCCCEEEEEEeCCCCEEEEEeCC
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMAK--SFEVTELPVRSAKFVARKQWVVAGADD 78 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~---~la~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d 78 (871)
+..+...+.||..+|+|+.|-|+.. ++++|+.||.|.+|.++.....+ .+.+|.. .+++++.......+.+.|
T Consensus 43 k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~--~~~cv~a~~~~~~~~~ad 120 (764)
T KOG1063|consen 43 KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK--ECVCVVARSSVMTCKAAD 120 (764)
T ss_pred cceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce--eEEEEEeeeeEEEeeccC
Confidence 3345567889999999999999887 89999999999999998544433 3444443 344444333333333556
Q ss_pred CeEEEEECCC--------------------------------------------------CcEEEEEccCCCCeEEEEEc
Q 002881 79 MFIRVYNYNT--------------------------------------------------MDKVKVFEAHTDYIRCVAVH 108 (871)
Q Consensus 79 g~i~iw~~~~--------------------------------------------------~~~~~~~~~~~~~i~~i~~~ 108 (871)
+.+.+|+.+. .+.+..+.+|.+.|.+++|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 6666666521 13345567899999999998
Q ss_pred CCCC---EEEEEECCCeEEEEECCCCc--------------------eEE----------EEeecCCcceEEEEEecCCC
Q 002881 109 PTLP---YVLSSSDDMLIKLWDWEKGW--------------------MCT----------QIFEGHSHYVMQVTFNPKDT 155 (871)
Q Consensus 109 ~~~~---~l~~~~~dg~i~iwd~~~~~--------------------~~~----------~~~~~~~~~v~~~~~~p~~~ 155 (871)
..+. +|+++|.|..|+||.+.-+. ... ..+.+|...|+++.|+| ..
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~ 279 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EG 279 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-ch
Confidence 7654 78899999999999864221 111 12348999999999999 77
Q ss_pred CEEEEEECCCcEEEEECCCCCCeEE-------EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC---ceEEEe
Q 002881 156 NTFASASLDRTIKIWNLGSPDPNFT-------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTL 225 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~ 225 (871)
..|++++.|.++.+|.....+-+.. ..+...+.....|+|+++ .+++-+..|..++|..... .....+
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--VIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--EEEEecccCcEEEEeccCccceeecccc
Confidence 7899999999999998866543321 223345678899999986 7889899999999984332 234556
Q ss_pred cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----CeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 226 EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT----YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 226 ~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
.+|...|+++.|+|.|.++++.|.|.+-|+|-.-. +..+..-+.|...+.|+++-+....+++|.++..++++...
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 88999999999999999999999999999986441 12233344566678999999876778889999999885321
Q ss_pred Cc-----------------------ceEEEeCCCcEEEE--eecceE---EEEEe--ecCcc-eeccCCCeee-----ee
Q 002881 302 EE-----------------------PVASMDNSGKIIWA--KHNEIQ---TVNIK--SVGAD-YEVTDGERLP-----LA 345 (871)
Q Consensus 302 ~~-----------------------~~~~~~~~~~~~~~--~~~~~~---~~~~~--~~~~~-~~~~~~~~~~-----~~ 345 (871)
.. .+..+..+.+.++. ..+.-. ..... ..... ..-+..+.+. -.
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 10 01111111222221 000000 00000 00000 0000000000 01
Q ss_pred eeecCccccCCceEEECCCCCEEEEEc------CCcEEEEEeecccc-----cCcCceeEEEEecCCcEEEEec-CCeEE
Q 002881 346 VKELGTCDLYPQSLKHNPNGRFVVVCG------DGEYIIYTALAWRN-----RSFGSALEFVWSSDGEYAVRES-SSKIK 413 (871)
Q Consensus 346 ~~~~~~~~~~~~~~~~s~~g~~lav~~------~~~~~i~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~-~~~i~ 413 (871)
+..+-.+...+.+++.+|+|+++|++. ...|.+|+...|.. .+...++.++|||||+|+++.+ |+++.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 122345666788999999999999987 35688999988863 3556889999999999998888 89999
Q ss_pred Eeeccc-----------ccceeeec--CccceeeecCcEEEEEeCC-eEEEEeccCC--cEEEE-----EEcceeEEEEc
Q 002881 414 IFSKNF-----------QEKRSVRP--TFSAERIYGGTLLAMCSND-FICFYDWAEC--RLIRR-----IDVTVKNLYWA 472 (871)
Q Consensus 414 i~~~~~-----------~~~~~~~~--~~s~~~i~~~~~La~~~~~-~v~~~d~~~~--~~~~~-----~~~~i~~i~~s 472 (871)
+|+... +.+..+.. .++|+ +..+++++.| +|.||..... +-+.+ +...|+.++|.
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd----e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD----EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcc----cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 997421 22223322 88898 8889999999 9999998877 33333 22477888876
Q ss_pred C-----CCCEEEEEeCCeEEEEE
Q 002881 473 D-----SGDLVAIASDTSFYILK 490 (871)
Q Consensus 473 ~-----~~~~la~~~~~~~~~l~ 490 (871)
+ .+..++++-+.|.+++|
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred ccccccccceEEEEecccEEEEE
Confidence 4 34477888899998887
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-29 Score=226.80 Aligned_cols=279 Identities=25% Similarity=0.371 Sum_probs=234.2
Q ss_pred EEEEEcCC-CCEEEEEE-------cCCeEEEEeCCCCceeEEeee--cCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECC
Q 002881 19 KSVDLHPS-EPWILASL-------YSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 19 ~~i~~s~~-~~~la~~~-------~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~ 87 (871)
.++.|||- .++||++. .+|++.|.++....-+..+.. -.+.+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889993 33455543 378999999865544444432 45679999999964 577888999999999964
Q ss_pred -CCcEEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002881 88 -TMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 88 -~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (871)
...++..++.|...|.++.|++. +..++++|.|++|++|+...+ ....++.+|...|....|+|..++.|++++.||
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 33578888999999999999985 456778899999999999877 667789999999999999999999999999999
Q ss_pred cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCC-CE
Q 002881 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PI 243 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p~~-~~ 243 (871)
++++||++.......+..|...+.|+.|+..... ++++|+.|+.|+.||+++ ..++..+.+|.-.|..+.|||.. .+
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999887666668999999999999987654 999999999999999997 45788899999999999999965 58
Q ss_pred EEEEECCCcEEEEeCCCCe-EEEEEecCCccEEEEEEee-CCCeEEEEEcCCeEEEec
Q 002881 244 IITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMK-SSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~g~~dg~i~i~~ 299 (871)
|++++.|-+++|||...+. .+.+...|.+-+..+.|++ ++.++|..+-|+.+.+|.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 9999999999999987544 5556667778888899988 467899999999999984
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-28 Score=253.48 Aligned_cols=273 Identities=20% Similarity=0.329 Sum_probs=245.4
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcc-C
Q 002881 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA-H 98 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~ 98 (871)
-++|+. .+.||+|. ...|.+|+..++........+...|+++.|+++|..|++|..+|.|.|||..+.+.+..+.. |
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 367884 45688886 55799999999987776666688999999999999999999999999999999999999988 9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCe
Q 002881 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178 (871)
Q Consensus 99 ~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (871)
...|-+++|+ +..+.+|+.|+.|..+|++........+.+|...|..+.|++ +++++++|+.|+.+.|||.....+.
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc
Confidence 9999999999 567999999999999999987665556888999999999999 8999999999999999999999999
Q ss_pred EEEecCCCCeeEEEEeecCCcCEEEEEe--CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE--ECCCcEE
Q 002881 179 FTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG--SEDGTVR 254 (871)
Q Consensus 179 ~~~~~~~~~i~~i~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~--~~dg~v~ 254 (871)
..+..|...|..++|+|-..+ +|++|+ .|+.|++||..++..+..+. ....|+++.|++..+-|+++ ..++.|.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred EEEeccceeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 999999999999999998765 788875 58999999999999988887 56789999999998766654 4667899
Q ss_pred EEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
||+..+.+.+..+..|..+|..++++|||..+++|+.|.++++|.
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999999999999999999999999999999999999999984
No 71
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.7e-28 Score=250.95 Aligned_cols=777 Identities=15% Similarity=0.146 Sum_probs=434.4
Q ss_pred CCChhhhhhhcccCCCCEEEEEEcCCCCEEEEEEc----CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe
Q 002881 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (871)
Q Consensus 1 m~~~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 76 (871)
|.+.++.+..+......-+-++|||..+++|+++. .|.|.||- ++|++.+... -.-.+++++|+|..-.|+.|.
T Consensus 1 MtLYfDtkIE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gw 78 (1416)
T KOG3617|consen 1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGW 78 (1416)
T ss_pred CceeecceeecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhcc
Confidence 56666666666655555566789999999999874 68999997 7777554333 122367799999999999999
Q ss_pred CCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE-EEeecC--------------
Q 002881 77 DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT-QIFEGH-------------- 141 (871)
Q Consensus 77 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~-------------- 141 (871)
.-|.+.+|+.++.+.-.....|..+|..+.|||+|..++++..-|.+.+|......... ..+..|
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~ 158 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLS 158 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecC
Confidence 99999999998877766667899999999999999999999999999999876210100 000000
Q ss_pred -----------------CcceE-EEEEe-------------cCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeE
Q 002881 142 -----------------SHYVM-QVTFN-------------PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (871)
Q Consensus 142 -----------------~~~v~-~~~~~-------------p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 190 (871)
.+.+- -..|- | ++..|+.++.+|+|+..|-.+ ......+.. +.| .
T Consensus 159 ~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~d-S~v-Q 234 (1416)
T KOG3617|consen 159 YDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQNG-RQRTVHKLD-SEV-Q 234 (1416)
T ss_pred CChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcCCC-cEEEEEEcc-chH-H
Confidence 00000 01111 2 566788888888888777432 222222111 110 1
Q ss_pred EEEeecCCcCEEEEEeCCCeEEEEEC----------------CC-------------C----ceEEEecCcccCeEEEEE
Q 002881 191 VDYFTGGDKPYLITGSDDHTAKVWDY----------------QT-------------K----SCVQTLEGHTHNVSAVCF 237 (871)
Q Consensus 191 i~~~~~~~~~~l~~~~~dg~i~v~d~----------------~~-------------~----~~~~~~~~~~~~v~~i~~ 237 (871)
+-|.+..+ .+++-..+-.+.++-. +. | .+...+ .....++++++
T Consensus 235 mLf~~~~e--ai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY 311 (1416)
T KOG3617|consen 235 MLFMGYCE--AISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCY 311 (1416)
T ss_pred HHHhcccc--eEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEE
Confidence 11222111 1111111111111110 00 0 000011 12456899999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCC-------eEEEEEec---CCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEE
Q 002881 238 HPELPIIITGSEDGTVRIWHATTY-------RLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS 307 (871)
Q Consensus 238 ~p~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~---~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 307 (871)
+..+..+..|...|.+.+|--... .-.+.++. ..+.|..+.|.|--+.+++-+....+.+. +.+..+
T Consensus 312 ~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~---E~~l~~ 388 (1416)
T KOG3617|consen 312 GEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG---ENSLTV 388 (1416)
T ss_pred eccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec---cCchHH
Confidence 999999999999999999953221 22334433 34679999999988888887777666553 221111
Q ss_pred EeC-CCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeecccc
Q 002881 308 MDN-SGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRN 386 (871)
Q Consensus 308 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~~ 386 (871)
... ..-.+-.+.+.+....- .+|....+ ..+..+..+..+. ..|++++..++.+|+......
T Consensus 389 ~h~~~~~A~q~ss~S~~L~hc---------~sGv~~~l------~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~ 451 (1416)
T KOG3617|consen 389 KHRGKMAAIQTSSNSFTLLHC---------TSGVSQDL------KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGS 451 (1416)
T ss_pred HHhhhhHHhhhcCCceEEEee---------ccchhhhh------hhccchhhheecc--ceEEEEcCceEEEEEecccch
Confidence 110 00011111222211111 01111100 1122333444444 448899999999998853211
Q ss_pred cCcCceeEE-----EEecCCcEEEEecCCeEEEeecccccceeeec-Cccceeee---cCcEEEEEeCC-eEEEEeccCC
Q 002881 387 RSFGSALEF-----VWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP-TFSAERIY---GGTLLAMCSND-FICFYDWAEC 456 (871)
Q Consensus 387 ~~~~~~~~~-----~~s~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~s~~~i~---~~~~La~~~~~-~v~~~d~~~~ 456 (871)
.....+..+ +..--++-+.+..+..|.++...+...+.+.. .+....+. .|.+|++.+.. .+.-||+...
T Consensus 452 la~~~~~tF~cet~~la~~nqN~ycies~~Vfvrt~qGtv~q~i~~seiEg~~~~ldi~g~~l~v~t~~~~~k~~dvsr~ 531 (1416)
T KOG3617|consen 452 LATIQCTTFSCETTSLAIVNQNLYCIESDKVFVRTLQGTVRQEISLSEIEGVVVLLDIMGELLIVQTVSTVAKRLDVSRA 531 (1416)
T ss_pred hHHHhhhhhccccchHhHhhcceEEeccCcEEEEecchhhhhhccchhccCceehhhhccceeEEeehHHHHHHhhhhhh
Confidence 111111111 11111223344445566666544433332222 11111111 37788887766 5555665533
Q ss_pred cEEE--EE---------EcceeEEEEcCCCCEEEE--Ee-C----CeEEEEEecHHHHHh--hhhCCCCCCcccccccee
Q 002881 457 RLIR--RI---------DVTVKNLYWADSGDLVAI--AS-D----TSFYILKYNRDVVSA--YLDSGKPVDEQGVEDAFE 516 (871)
Q Consensus 457 ~~~~--~~---------~~~i~~i~~s~~~~~la~--~~-~----~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~f~ 516 (871)
++-. .. .+.+..+..+.+|..+.+ +. + +..+.|+|.+.++.. .++++.....++.
T Consensus 532 e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNakkEs~----- 606 (1416)
T KOG3617|consen 532 ELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNAKKESS----- 606 (1416)
T ss_pred cccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCcccccccccc-----
Confidence 3211 11 134566666665554322 21 1 345566665554433 2222111111111
Q ss_pred eeeeeeeEEEeeEEec---cEEEEEccCCeEEEEECCeEe--EEEecc-cceEEEEEeee-CCEEEEEe------cCCce
Q 002881 517 LLHETNERVRTGLWVG---DCFIYNNSSWRLNYCVGGEVT--TMFHLD-RPMYLLGYLAS-QSRVYLID------KEFNV 583 (871)
Q Consensus 517 ~~~~~~~~i~~~~w~~---~~~i~~~~~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~~~-~~~l~~~d------~~~~~ 583 (871)
........|+. ..|+..--.-...- .+... .-.++. ..+.++..+.. ...+.+.. ..+.+
T Consensus 607 -----ts~pvr~fWD~~epRllv~E~~~~~p~s--~pQ~ns~QPs~~~qskVvvLt~F~seehG~ll~~~~q~~~~~~~L 679 (1416)
T KOG3617|consen 607 -----TSPPVRFFWDENEPRLLVVECIHVEPES--TPQRNSLQPSHFVQSKVVVLTAFVSEEHGILLQGMQQKNLHCGKL 679 (1416)
T ss_pred -----CCCCceeeecCCCCcEEEEEeeeccccc--CcccccCCCccccccceEEEeeecccccceeeeecccCCCCccce
Confidence 01111233543 12221100000000 00000 000000 01112211111 11111111 00111
Q ss_pred EEEEecchhHhHHHHHHccCHHHHhhhC--CCCCcchhHHHHHHHHhCCChhhhhhcccCcccceeeeeccCCHHHHHHH
Q 002881 584 MGYTLLLSLIEYKTLVMRGDLERANEIL--PSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEI 661 (871)
Q Consensus 584 ~~~~l~~~~~~~~~~~~~~~~~~a~~~l--~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~ 661 (871)
+...++.|-. .++.-|+-..-. +.|+. .-+++.+...--.+..-..+++....|.+++..|++|.|++.
T Consensus 680 ----l~~~VPn~yf--vRk~~~d~ed~~ee~~i~~---~~~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~Afks 750 (1416)
T KOG3617|consen 680 ----LSVSVPNFYF--VRKSGWDEEDNREERTIGK---TLVAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKS 750 (1416)
T ss_pred ----eeeecCceEE--Eecccccccccccccccch---hhhhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHH
Confidence 1223333211 122222111000 12222 222344444444445555567778889999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH-HHHHHHHHHHHHcCCchHHHHHHHHcCCHH
Q 002881 662 ATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA-EGISKLASLAKEQGKNNVAFLCLFMLGKLE 740 (871)
Q Consensus 662 ~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~ 740 (871)
++.++++..|..+|.|+++..++++|.-|+..+++.+++.-+.+...+. +.-.++|-+|.+.|....|..+|.++.+++
T Consensus 751 I~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D 830 (1416)
T KOG3617|consen 751 IQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD 830 (1416)
T ss_pred HHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888876555 667789999999999999999999999999
Q ss_pred HHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHHhhhhC--------------------------hhhhhhcCCCcc
Q 002881 741 DCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--------------------------PKAAESLADPEE 794 (871)
Q Consensus 741 ~a~~l~~~~~~~~~A~~la~~~~~~~~~~~~~~~~~~L~~~~--------------------------~~~a~~l~~~~~ 794 (871)
..-++|...|+|++|+++|.++-.-++..-.-.|+++|.... .+.-++.-....
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc
Confidence 999999999999999999997755333333333444443221 111222222334
Q ss_pred CCCCcccHHHHHHHhHHHhhccCCCCCCccccc
Q 002881 795 YSNLFDDWQVALAVESKAAATRGVHPPAEDYVN 827 (871)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 827 (871)
.+.|+..|++.+|..|+.+.|..-|..|+||-+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs 943 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFS 943 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhh
Confidence 567888999999999999999999999999955
No 72
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=240.96 Aligned_cols=283 Identities=18% Similarity=0.300 Sum_probs=240.0
Q ss_pred hhhcccCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 8 KRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~-~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
.-.|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.......++..|.+.|+.+++.. ..++++++|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34568999999999999987 6799999999999999999999999999999999999987 67899999999999998
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
+. .+.+++.+ ...+..+.-+..+..++|||. .|.|||.... .+.+.+.-....|.++.|+|...++|++|..|+.
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 75 46666654 345677777777788888887 5999999876 4556666566779999999988889999999999
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCCCEEE
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPIII 245 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p~~~~l~ 245 (871)
|.+||++..+++..... ...-+.++|+|.+- .+++|.+|..++.||++. ..++....+|.+.|.++.|+|.|+-++
T Consensus 212 IvLyD~R~~~Pl~KVi~-~mRTN~IswnPeaf--nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVIL-TMRTNTICWNPEAF--NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred eEEEecccCCccceeee-eccccceecCcccc--ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 99999999998876642 34457899999555 689999999999999986 456778889999999999999999999
Q ss_pred EEECCCcEEEEeCCCCeEEEEEe-cCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 246 TGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
+||.|.+|+||..+.+.....+. .-...|.++.||.|.+++++|++|+.+++|..
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 99999999999988776433322 22467999999999999999999999999954
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-27 Score=216.61 Aligned_cols=238 Identities=18% Similarity=0.296 Sum_probs=210.5
Q ss_pred EeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 002881 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (871)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~ 131 (871)
.+.+|+.|++.+.++.+|.+|++++.|....||-..+|+.+.++.+|.+.|+|++.+.+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCCcceEEEEEecCCCCEEEEEEC-----CCcEEEEECC-------CCCCeEEEecCCCCeeEEEEeecCCc
Q 002881 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-----DRTIKIWNLG-------SPDPNFTLDAHQKGVNCVDYFTGGDK 199 (871)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~ 199 (871)
+.+. .+. ...+|..+.|++ ++++++.++. .+.|.++|++ +.+|...+..+...++.+-|.|.++
T Consensus 85 k~la-~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~- 160 (327)
T KOG0643|consen 85 KQLA-TWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE- 160 (327)
T ss_pred cEEE-Eee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-
Confidence 4443 333 456799999999 7777776654 3679999998 4567888888899999999999988
Q ss_pred CEEEEEeCCCeEEEEECCCCc-eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEE
Q 002881 200 PYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (871)
Q Consensus 200 ~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~ 278 (871)
+|++|.++|.|..||.+++. .+...+.|...|+.++++|+..+++++|.|.+-++||..+.+.+.++... .++.+.+
T Consensus 161 -~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aa 238 (327)
T KOG0643|consen 161 -TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAA 238 (327)
T ss_pred -EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-cccccee
Confidence 89999999999999999975 45666789999999999999999999999999999999999999888766 7899999
Q ss_pred EeeCCCeEEEEEcCCeE
Q 002881 279 YMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 279 ~~~~~~~l~~g~~dg~i 295 (871)
++|....++.|+.....
T Consensus 239 isP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAM 255 (327)
T ss_pred cccccceEEecCCceee
Confidence 99998888887655443
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.3e-29 Score=240.32 Aligned_cols=253 Identities=20% Similarity=0.398 Sum_probs=214.7
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeee-cCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIR 82 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 82 (871)
.+++++++.+|..+|..+.||||.++|++++.+..+.+||+.+|...+.+.. +...+.+++|.|||..+++|+.|+.+.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 3678899999999999999999999999999999999999999998887763 467899999999999999999999999
Q ss_pred EEECCCCcEEEEEccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 83 VYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
.|+++. ......++- ...|.+++.++||+++++.+.|..|++++.++. ...... ....+|++++.+. ++.++++.
T Consensus 338 ~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~li-se~~~its~~iS~-d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRGLI-SEEQPITSFSISK-DGKLALVN 413 (519)
T ss_pred EecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhccc-cccCceeEEEEcC-CCcEEEEE
Confidence 999874 334444332 346999999999999999999999999998875 222232 3446799999998 88999999
Q ss_pred ECCCcEEEEECCCCCCeEEEecCCCCeeEEEEee-cCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 002881 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~ 240 (871)
-.+..+.+||+.....+.++.+|..+-.-+.-.- .++..++++|++|+.|+||+..+++++..+.||...|.+++|+|.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 9999999999998888888888876644443322 234459999999999999999999999999999999999999997
Q ss_pred CC-EEEEEECCCcEEEEeCCC
Q 002881 241 LP-IIITGSEDGTVRIWHATT 260 (871)
Q Consensus 241 ~~-~l~~~~~dg~v~iwd~~~ 260 (871)
.+ .+|++|.||+|+||-...
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 65 789999999999997653
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=238.65 Aligned_cols=276 Identities=20% Similarity=0.400 Sum_probs=237.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeE----E-------------e-eecCCCEEEEEEeCCC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK----S-------------F-EVTELPVRSAKFVARK 69 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~ 69 (871)
.+.+..|.-+|++++++|+.+++++++.+|+|.-|++.++...+ . - +.|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 35566799999999999999999999999999999998875331 1 1 2566789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEE
Q 002881 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT 149 (871)
Q Consensus 70 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 149 (871)
++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|+.|++|+++.. ....++.+|...|.++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999998889999999999999999976 66777889999999998
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC-c
Q 002881 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-H 228 (871)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~ 228 (871)
... -+..+.+|+.|+++++|++. .+....+.++.+.+.|++|..+. .+++|+++|.|.+|++.+++++.+... |
T Consensus 294 aL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~---HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE---HFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc---ceeeccCCceEEEeeecccCceeEeeccc
Confidence 876 56777777799999999994 44456677889999999998766 499999999999999999888776532 1
Q ss_pred -----------ccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 229 -----------THNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 229 -----------~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
...|++++..|..+++++|+.+|.|++|-+..+ +++..++. .+-|++++|+++|+.|++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc-ccEEEEEEEccCCCEEEEec
Confidence 127899999999999999999999999998877 35555553 37899999999999888774
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=241.94 Aligned_cols=287 Identities=21% Similarity=0.352 Sum_probs=235.1
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc----eeEEeee-cCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
.++.+|+..|.++++.|.|..|++|+.|-+|++||+.... ..+.+.. ....|+++.|++.|..|++.+...+.++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 3577899999999999999999999999999999987542 2223332 3457999999999999999999999999
Q ss_pred EECCCCcEEEEE------------ccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEee-----cCCcce
Q 002881 84 YNYNTMDKVKVF------------EAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE-----GHSHYV 145 (871)
Q Consensus 84 w~~~~~~~~~~~------------~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v 145 (871)
+|-...+..... ++|...++|.+|+|.. ..+++++.||+++|||+.......+++. +..-++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 997654443332 4788999999999975 5788999999999999987654444443 234568
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCC--e-EEEecCCC--CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-
Q 002881 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDP--N-FTLDAHQK--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK- 219 (871)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~-~~~~~~~~--~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~- 219 (871)
++++|+| +++.+++|+.||.|.+|+.++... . ..-..|.. .|+|+.|+++|+ +|++-+.|+++++||++..
T Consensus 321 tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~--~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 321 TSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN--YLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred eeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc--hhhhccCCCceeeeeccccc
Confidence 9999999 888999999999999999865432 2 22346665 899999999998 8999999999999999864
Q ss_pred ceEEEecCc--ccCeEEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc
Q 002881 220 SCVQTLEGH--THNVSAVCFHPELPIIITGSE------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 220 ~~~~~~~~~--~~~v~~i~~~p~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
+++....+. ..+-+.++|||+.++|++|++ .|.+.+||..+...+..+......|..+.|+|.-+.|.+|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 455554443 234678999999999999863 568999999999999999988889999999999999999999
Q ss_pred CCeEEEe
Q 002881 292 EGTIMVK 298 (871)
Q Consensus 292 dg~i~i~ 298 (871)
||.++++
T Consensus 478 dG~~~vy 484 (641)
T KOG0772|consen 478 DGTAHVY 484 (641)
T ss_pred CCceEEE
Confidence 9999885
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=6.7e-28 Score=261.93 Aligned_cols=283 Identities=19% Similarity=0.303 Sum_probs=239.7
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE--cCCeEEEEeCCC------------CceeEEeeecCCCEEEEEEeCCCCEEEEEeC
Q 002881 12 AQRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQS------------QTMAKSFEVTELPVRSAKFVARKQWVVAGAD 77 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 77 (871)
..+..+|.+++.||||..+|+|+ .||.++||+.+. .+.+.+...|.+.|+|+.|+|||++||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34456899999999999999999 799999998643 2344556679999999999999999999999
Q ss_pred CCeEEEEECCC------------------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee
Q 002881 78 DMFIRVYNYNT------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (871)
Q Consensus 78 dg~i~iw~~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (871)
|+.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|++|.|||..+. .....+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeee
Confidence 99999998762 1356678899999999999999999999999999999999998 8889999
Q ss_pred cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecC------CCCeeEEEEeecCCcCEEEEEe----CCC
Q 002881 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH------QKGVNCVDYFTGGDKPYLITGS----DDH 209 (871)
Q Consensus 140 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~~l~~~~----~dg 209 (871)
+|.+.|..+.|.| -+++|++-+.|++|+||.+........+..+ ..-+..+.|+|+|+ +|++.. .-.
T Consensus 169 ~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~--~las~nA~n~~~~ 245 (942)
T KOG0973|consen 169 GHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH--HLASPNAVNGGKS 245 (942)
T ss_pred cccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC--eecchhhccCCcc
Confidence 9999999999999 8999999999999999998776555555432 23467899999998 777653 234
Q ss_pred eEEEEECCCCceEEEecCcccCeEEEEEcCC------C-------C----EEEEEECCCcEEEEeCCCCeEEEEEe-cCC
Q 002881 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE------L-------P----IIITGSEDGTVRIWHATTYRLENTLN-YGL 271 (871)
Q Consensus 210 ~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~------~-------~----~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~ 271 (871)
.+.|.+-.+.+.-..+-+|..++.++.|+|. . + .+|+||.|++|.||.....+++.... ...
T Consensus 246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 6888888777878889999999999999982 1 1 68899999999999988777655433 345
Q ss_pred ccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 272 ERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 272 ~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
..|..++|+|||-.|.+++.||+|.+.
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 689999999999999999999999884
No 78
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=5.6e-29 Score=245.79 Aligned_cols=248 Identities=21% Similarity=0.358 Sum_probs=220.1
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEE
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVY 84 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 84 (871)
...+++.||..+|.+++|+++|..+++++.|+.|++||.++|+.+..+. ....++|+.|+|++ +.+++|+.|+.|+.|
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 4578899999999999999999999999999999999999999998887 45678999999999 888999999999999
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
|+++++.++.+..|-+.|..+.|-++|++++++++|++++||+.+....+......+.....++..+| .++.++.-+.|
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~d 406 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMD 406 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccC
Confidence 99999999999999999999999999999999999999999999988555555555566678899999 88999999999
Q ss_pred CcEEEEECCCC---CCeEEEecCCC--CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 002881 165 RTIKIWNLGSP---DPNFTLDAHQK--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 165 g~i~i~d~~~~---~~~~~~~~~~~--~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p 239 (871)
..|.+|.+... .....+.+|.. .-..+.|||+|. +|++|..+|.+.+||.++-+.+..++.|..++..+.|+|
T Consensus 407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~--~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR--TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC--eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecC
Confidence 99999997542 22334556643 345678899888 899999999999999999999999999999999999999
Q ss_pred CC-CEEEEEECCCcEEEEe
Q 002881 240 EL-PIIITGSEDGTVRIWH 257 (871)
Q Consensus 240 ~~-~~l~~~~~dg~v~iwd 257 (871)
.. ..+++|+.||.|++|+
T Consensus 485 ~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 485 VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCcceeEecccCceeEecC
Confidence 66 4899999999999996
No 79
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-24 Score=223.60 Aligned_cols=415 Identities=15% Similarity=0.166 Sum_probs=288.0
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 002881 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK-VKVFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (871)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~ 132 (871)
-...+|++++|+.+.+.||++-.+|.|-+||+..+=. ...+.+ .+..|.+++|++ +..|++.+.+|.|.-||+.+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l- 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL- 100 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC-
Confidence 3467899999999999999999999999999986532 334444 456799999995 557999999999999999998
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeE--EEecCCCCeeEEEEeecCCcCEEEEEeCCCe
Q 002881 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (871)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~ 210 (871)
..........+.|++++.+| .+..++.|+.||.+..++...+.... .+....+.+.+++|+|++. .+++|+.||.
T Consensus 101 k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDGV 177 (691)
T ss_pred ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc--EEEecccCce
Confidence 55666677788999999999 78999999999988888876665433 2344568899999999987 4999999999
Q ss_pred EEEEECCCCceEEEec-------C-cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC
Q 002881 211 AKVWDYQTKSCVQTLE-------G-HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 211 i~v~d~~~~~~~~~~~-------~-~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~ 282 (871)
|++||..++..+.... . ...-|+++.+-.++ .|++|.+-|+|.+||...+.++..+..+...|.+++..++
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 9999999888766221 1 22347888888665 7999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCeEEEecCCCc---------------ceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeee
Q 002881 283 SRRIVIGYDEGTIMVKIGREE---------------PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVK 347 (871)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (871)
+.++.+++.|+.+.-+..... .+.++..-+..++....+..++-.....+ ...+-.
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~--~~~~h~------- 327 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREF--KNMDHR------- 327 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcccccc--Cchhhh-------
Confidence 999999999998866421111 11111111112211111111111000000 000000
Q ss_pred ecCccccCCceEEECCCCCEEEEEcCCcEEEEEeecc------c--------ccCcCceeEEEEecCCcEEEEecCCeEE
Q 002881 348 ELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAW------R--------NRSFGSALEFVWSSDGEYAVRESSSKIK 413 (871)
Q Consensus 348 ~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~------~--------~~~~~~~~~~~~s~~~~~~~~~~~~~i~ 413 (871)
.......-..+...|..++++......+.+|..... . .+....+.+.+.||+|++++.+.-.+.+
T Consensus 328 -~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~ 406 (691)
T KOG2048|consen 328 -QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTK 406 (691)
T ss_pred -ccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceE
Confidence 011111112455666666777777777777765443 1 2233566788889999999999877888
Q ss_pred Eeecccccceeeec--------------CccceeeecCcEEEEEeCC--eEEEEeccCCcE--EEEEE-----cceeEEE
Q 002881 414 IFSKNFQEKRSVRP--------------TFSAERIYGGTLLAMCSND--FICFYDWAECRL--IRRID-----VTVKNLY 470 (871)
Q Consensus 414 i~~~~~~~~~~~~~--------------~~s~~~i~~~~~La~~~~~--~v~~~d~~~~~~--~~~~~-----~~i~~i~ 470 (871)
||.++......... .|+. .+..+..++.+ .+..++++++.. +..+. ..|..++
T Consensus 407 iy~L~~~~~vk~~~v~~~~~~~~~a~~i~fti----d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~ 482 (691)
T KOG2048|consen 407 IYRLQPDPNVKVINVDDVPLALLDASAISFTI----DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLV 482 (691)
T ss_pred EEEeccCcceeEEEeccchhhhccceeeEEEe----cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEE
Confidence 88766533211111 1222 36666666644 777777765532 22111 3688999
Q ss_pred EcCCCCEEEEEeCCeEEEE
Q 002881 471 WADSGDLVAIASDTSFYIL 489 (871)
Q Consensus 471 ~s~~~~~la~~~~~~~~~l 489 (871)
.|++|+++|+++..+.++.
T Consensus 483 ~SsdG~yiaa~~t~g~I~v 501 (691)
T KOG2048|consen 483 VSSDGNYIAAISTRGQIFV 501 (691)
T ss_pred EcCCCCEEEEEeccceEEE
Confidence 9999999999887666554
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=219.57 Aligned_cols=270 Identities=18% Similarity=0.289 Sum_probs=218.3
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCC-Ccee-EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002881 13 QRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMA-KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 13 ~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
.-.+.|.+++||| ...++++++.||+|++|+++. |..+ +....|.+||.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 455666788899999999987 3322 344568999999999999999999999999999999998
Q ss_pred cEEEEEccCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 90 DKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
....+..|.++|.++.|-+... .|+|||.|.+|+.||.+....+.... -..++.++..- ..+++++..++.|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~---~pm~vVata~r~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL---YPMAVVATAERHI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhcc---CceeEEEecCCcE
Confidence 5567788999999999988665 89999999999999999874443332 33456666553 4588999999999
Q ss_pred EEEECCCCCCeEEE--ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC--ceEEEecCcc---------cCeEE
Q 002881 168 KIWNLGSPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCVQTLEGHT---------HNVSA 234 (871)
Q Consensus 168 ~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~---------~~v~~ 234 (871)
.+|+++++...+.. ...+-.+.|++..++.+. .+.|+-+|.+.+..+..+ +.-.+++-|. ..|.+
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCc--eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 99999776543321 234456889999999885 699999999999998875 3334444443 24788
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 235 i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
|+|+|....|+|.|.||++.+||-.....+.+.+.+..+|++.+|+.+|.++|-+.
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999999999999999887778888888889999999999999988653
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.5e-27 Score=213.96 Aligned_cols=276 Identities=18% Similarity=0.279 Sum_probs=226.1
Q ss_pred EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE--EccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEE
Q 002881 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV--FEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd 127 (871)
+.+++|..+|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+|. ...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 44567888999999999999999999999999999987755443 3589999999999985 56899999999999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC
Q 002881 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
+++++....+ ..... -.-+.|+| +++++++++.|..|.+.|.++.+.....+ ....++.+.|+.+++ +++....
T Consensus 94 ~r~~k~~~~i-~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd--~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKCTARI-ETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND--LFFLTNG 167 (313)
T ss_pred eccCcEEEEe-eccCc-ceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC--EEEEecC
Confidence 9998444444 32222 34578999 89999999999999999998877654433 455678888985554 6666667
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEE
Q 002881 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 287 (871)
.|.|.|..+..-+++.+++.|.....||.|+|+|+++++|+.|..+.+||+...-+++.+....-+|..++|+.+|++||
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 89999999999999999999999999999999999999999999999999998888899998889999999999999999
Q ss_pred EEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCE
Q 002881 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (871)
Q Consensus 288 ~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 367 (871)
+|++|-.|-|- .-.+|..+|. ..++.+...++|+|...+
T Consensus 248 SaSEDh~IDIA---------~vetGd~~~e--------------------------------I~~~~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 248 SASEDHFIDIA---------EVETGDRVWE--------------------------------IPCEGPTFTVAWHPKRPL 286 (313)
T ss_pred ccCccceEEeE---------ecccCCeEEE--------------------------------eeccCCceeEEecCCCce
Confidence 99999988762 1223333222 123334468999999999
Q ss_pred EEEEcC
Q 002881 368 VVVCGD 373 (871)
Q Consensus 368 lav~~~ 373 (871)
||.+.+
T Consensus 287 LAyA~d 292 (313)
T KOG1407|consen 287 LAYACD 292 (313)
T ss_pred eeEEec
Confidence 987764
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-25 Score=235.76 Aligned_cols=388 Identities=16% Similarity=0.245 Sum_probs=294.9
Q ss_pred EEEEEEcCCC--CEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 18 VKSVDLHPSE--PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 18 v~~i~~s~~~--~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
|+++ +||.- +.++.|+..|.+.+||+++++.+.+++.+...|+++.=+|--..+++|..+|+|.++|++.++.+.+|
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6665 46643 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 96 EAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 96 ~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
+...++|+.++|..||+. +++|+..|.+.+||++.......+...|.+.|....|.| +...+++++.|..+++|-.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeC
Confidence 866699999999999865 556667799999999988566666668988999999999 888999999999998886553
Q ss_pred CC----CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC----------------------------------
Q 002881 175 PD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY---------------------------------- 216 (871)
Q Consensus 175 ~~----~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~---------------------------------- 216 (871)
+. ..+.-.+|..|..|+.|.... ...+.+++.|++++.+++
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~-g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQ-GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccC-cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 32 234446788888888887322 125666666665555543
Q ss_pred -------------------------------CCCce-EEEec-----CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 217 -------------------------------QTKSC-VQTLE-----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 217 -------------------------------~~~~~-~~~~~-----~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
++... .+.+. .....+++++.++.|++.+.|++.|.|-+|++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 22111 11111 123568999999999999999999999999999
Q ss_pred CCeEEEEE---ecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceec
Q 002881 260 TYRLENTL---NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEV 336 (871)
Q Consensus 260 ~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (871)
+|....++ +.|.+.|++++...-++.+++++.+|.+.+|...... +.. ..
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----------l~~------~l----------- 531 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----------LKK------SL----------- 531 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----------eee------ee-----------
Confidence 99988888 4788999999999999999999999999998433221 100 00
Q ss_pred cCCCeeeeeeeecCccccCCceEEECCCCCEE-EEEcCCcEEEEEeeccc-----ccCcCceeEEEEecCCcEEEEec-C
Q 002881 337 TDGERLPLAVKELGTCDLYPQSLKHNPNGRFV-VVCGDGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-S 409 (871)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-av~~~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~-~ 409 (871)
.++ ..+..+..+.....+ +.+.+-.|.+++....+ ..+...++++.|||||+++++++ |
T Consensus 532 -----------~l~---~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 532 -----------RLG---SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred -----------ccC---CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 001 122344444443444 45557788889877543 24667899999999999999998 8
Q ss_pred CeEEEeecccccc-eee-------ecCccceeeecCcEEEEEeCC--eEEEEec
Q 002881 410 SKIKIFSKNFQEK-RSV-------RPTFSAERIYGGTLLAMCSND--FICFYDW 453 (871)
Q Consensus 410 ~~i~i~~~~~~~~-~~~-------~~~~s~~~i~~~~~La~~~~~--~v~~~d~ 453 (871)
++|++||+-.... ..+ ...|+|. |++||++..+ .|++|.-
T Consensus 598 ~tIr~wDlpt~~lID~~~vd~~~~sls~SPn----gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLVDSPCTSLSFSPN----GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CcEEEEeccCcceeeeEecCCcceeeEECCC----CCEEEEEEecCceEEEEEc
Confidence 9999999653321 111 1268888 9999999887 6666653
No 83
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9.2e-27 Score=217.68 Aligned_cols=268 Identities=22% Similarity=0.365 Sum_probs=222.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 93 (871)
-.+.|.++.|+|.+..|++++.||.+++|+.....+...+. |..|+.+++|.+ ...+++|+.||.|+.+|++++.. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-e
Confidence 46789999999999999999999999999998886666665 889999999987 45699999999999999998654 4
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (871)
.+..|..+|+||..++....+++||.|++|++||.+.. .....+. ....|.++..+ ++.|++|+.+..+.+||++
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcc
Confidence 56679999999999998889999999999999999864 3333333 33478888775 6899999999999999999
Q ss_pred CCCCeEEE--ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC----ceEEEecCcc---------cCeEEEEEc
Q 002881 174 SPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHT---------HNVSAVCFH 238 (871)
Q Consensus 174 ~~~~~~~~--~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~---------~~v~~i~~~ 238 (871)
+.....+. ...+..+.|++..|++.+ +++++-||.|.+=.+... .....++.|. .+|.+++||
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEG--YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCc--eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 87654432 234567899999997775 888999999988666544 2233444442 368999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc
Q 002881 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 239 p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
|-...|+||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999998888888788999999999999999874
No 84
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=7.7e-24 Score=210.05 Aligned_cols=414 Identities=18% Similarity=0.349 Sum_probs=295.7
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCcE
Q 002881 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--------FIRVYNYNTMDK 91 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iw~~~~~~~ 91 (871)
.+-|-|.|..+... -+.+.+|+.+.. ..+-+.+|...|.|++.+|+.-.+++|..-| .+++||..+...
T Consensus 70 Nly~lptgE~vyfv--A~V~Vl~n~ee~-~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T 146 (626)
T KOG2106|consen 70 NLYLLPTGELVYFV--AAVGVLYNWEER-SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST 146 (626)
T ss_pred eeEEccCccEEEEe--ccEEEEEeehhh-hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee
Confidence 35566777655443 346677776542 3355778999999999999998888875544 599999888888
Q ss_pred EEEEccCCCCeEEEEEcCC--CCEEEEE--ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 92 VKVFEAHTDYIRCVAVHPT--LPYVLSS--SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~--~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+..+......|+|++|++. |.+|+.. +.+..+.+||+..+... ......+..|..+.|+|.+.+++++++ .|.+
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~-~~vk~sne~v~~a~FHPtd~nliit~G-k~H~ 224 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL-GPVKTSNEVVFLATFHPTDPNLIITCG-KGHL 224 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc-CcceeccceEEEEEeccCCCcEEEEeC-CceE
Confidence 8888877788999999984 4555544 34567999999877333 333344566889999998888888776 5899
Q ss_pred EEEECCCCCCeEEE---e-cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 002881 168 KIWNLGSPDPNFTL---D-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (871)
Q Consensus 168 ~i~d~~~~~~~~~~---~-~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 243 (871)
.+|+++++....+. + ..+..|.|++|.++++ +++|.++|.|.||+..+.+..+....|.+.|.+++.-.+|.+
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 99999887654432 2 2236799999999998 999999999999999888877777799999999999999965
Q ss_pred EEEEECCCcEEEEeCCCCeEEEE--EecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecc
Q 002881 244 IITGSEDGTVRIWHATTYRLENT--LNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (871)
++|+.|..|..|| ...+.++. ++...+.|..++=.. .-|.+|+..+.|..- ++
T Consensus 302 -lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~di~vGTtrN~iL~G--------t~------------- 356 (626)
T KOG2106|consen 302 -LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--GDILVGTTRNFILQG--------TL------------- 356 (626)
T ss_pred -eecCccceEEecc-ccccccccccCchhcCCeeEEecCC--CcEEEeeccceEEEe--------ee-------------
Confidence 4599999999999 55555443 334456777766433 337777776665431 00
Q ss_pred eEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEee--cccccCcCceeEEEEe
Q 002881 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL--AWRNRSFGSALEFVWS 398 (871)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~--~~~~~~~~~~~~~~~s 398 (871)
.++-.+.. .++.+ ..-.++.+|+...+++|+ ++.+.+|+-. .|....-.++.++.|.
T Consensus 357 ---------------~~~f~~~v----~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 357 ---------------ENGFTLTV----QGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFH 416 (626)
T ss_pred ---------------cCCceEEE----Eeccc-ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeecc
Confidence 00000000 01111 234677888877777776 8999999721 2334444677889999
Q ss_pred cCCcEEEEecCCeEEEeecccccceeee-------c-CccceeeecCcEEEEEeCC-eEEEEeccC-CcEEEEEE----c
Q 002881 399 SDGEYAVRESSSKIKIFSKNFQEKRSVR-------P-TFSAERIYGGTLLAMCSND-FICFYDWAE-CRLIRRID----V 464 (871)
Q Consensus 399 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~-------~-~~s~~~i~~~~~La~~~~~-~v~~~d~~~-~~~~~~~~----~ 464 (871)
|.|..++....|...+.|.+......+. . .|+|+ |.+||+++.| .|++|.++. +....+.. .
T Consensus 417 psg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs 492 (626)
T KOG2106|consen 417 PSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS 492 (626)
T ss_pred CcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc
Confidence 9994344334788888775543222221 1 67888 9999999998 999999874 44444333 4
Q ss_pred ceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 465 TVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 465 ~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
.|+.+.||+|++++...+-+-.+.+|
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeEEeeecCCCceEEeccCceEEEEE
Confidence 89999999999999999988877777
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.8e-27 Score=219.10 Aligned_cols=245 Identities=17% Similarity=0.360 Sum_probs=208.1
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCC--EEEEEeCCCeEEEE
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIRVY 84 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw 84 (871)
....+..|.++|++++.+ ++++|+|+.|-+|+|||+.+......+..|.+.|+++.|.+.-. +|++|++||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 345677899999999997 89999999999999999999988888999999999999999775 89999999999999
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
+......+.++++|.+.|+.++.+|.++.-++.+.|+.+++||+-.++.....-..+ .-+.+.|+| .+.+|+.+..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~-~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSP-QGDHFVVSGRN 189 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcC-CCCEEEEEecc
Confidence 999999999999999999999999999999999999999999998874333332233 345599999 67777777654
Q ss_pred CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEE--cCCCC
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF--HPELP 242 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~--~p~~~ 242 (871)
.|-+|.+.+......+. .+..+.|+.|-..+ ++++|++|+.|.+||..+..+...+.+|...|.++.+ .|++.
T Consensus 190 -~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~---~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIE-NPKRILCATFLDGS---ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred -EEEEEecccHhHhhhhh-ccccceeeeecCCc---eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 68899987765444433 23556677765333 7999999999999999999999999999999999884 56778
Q ss_pred EEEEEECCCcEEEEeCCCC
Q 002881 243 IIITGSEDGTVRIWHATTY 261 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~ 261 (871)
+|+++|+||.|++||+...
T Consensus 265 ~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEEeccCceEEEEEcccc
Confidence 9999999999999998765
No 86
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.6e-26 Score=247.29 Aligned_cols=264 Identities=18% Similarity=0.252 Sum_probs=206.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCcee-------------EEeeecCCCEEEEEEeC-CCCEEEEEeCCCe
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-------------KSFEVTELPVRSAKFVA-RKQWVVAGADDMF 80 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 80 (871)
-..|.....++++..+++++.+.....|+...+..+ ..+.+|.++|.+++|+| ++++|++|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345666666777665666666666666764433221 24678999999999999 8899999999999
Q ss_pred EEEEECCCC-------cEEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEec
Q 002881 81 IRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 81 i~iw~~~~~-------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 152 (871)
|++||+.++ +.+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||++++ .....+.+|...|.+++|+|
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEEC
Confidence 999999765 3466788999999999999985 68999999999999999988 56677788999999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCC-eeEEEEeecCCcCEEEEEe----CCCeEEEEECCCCc-eEEEec
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGS----DDHTAKVWDYQTKS-CVQTLE 226 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~~~l~~~~----~dg~i~v~d~~~~~-~~~~~~ 226 (871)
++++|++++.|++|++||+++++.+..+..|... +..+.|.+++. .+++++ .|+.|++||+++.. ++....
T Consensus 179 -dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~--~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 179 -DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD--LIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred -CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC--eEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 8899999999999999999999988888888765 34677887765 455543 47899999998754 344333
Q ss_pred Cc-ccCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEecC-CccEEEEEEeeC
Q 002881 227 GH-THNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKS 282 (871)
Q Consensus 227 ~~-~~~v~~i~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~ 282 (871)
.+ ...+....|+|++.++++++ .||.|++||+.+++........ ..++..+++.|.
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 23 33466678999999999887 5999999999988876655442 235666777664
No 87
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=8.8e-29 Score=233.36 Aligned_cols=227 Identities=27% Similarity=0.504 Sum_probs=205.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (871)
...|.|+.+ |...+++|..|++|+|||.++..+...+.+|++.|.|+.|.. +.|++|+.|.+|++||++++ .+..
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tg-e~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTG-EPLN 271 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCC-chhh
Confidence 457999988 556799999999999999999999999999999999999964 58999999999999999999 7778
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC---eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEE
Q 002881 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (871)
Q Consensus 137 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v 213 (871)
++-+|...|..+.|+ ++++++++.|.+|.+||+.+... ...+.+|...|+.+.|+. + |+++++.|.+|++
T Consensus 272 tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIVsASgDRTikv 344 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIVSASGDRTIKV 344 (499)
T ss_pred HHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEEEecCCceEEE
Confidence 888899999999997 47999999999999999987653 245678999999999853 2 8999999999999
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCC
Q 002881 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 214 ~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg 293 (871)
|++.+++.+.++.+|...|.|+.+. ++++++||+|.+|++||+..|.++..+++|.+-|.++.| +.+.+++|.-||
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDG 420 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 420 (499)
T ss_pred Eeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccc
Confidence 9999999999999999999888774 679999999999999999999999999999999999999 577899999999
Q ss_pred eEEEec
Q 002881 294 TIMVKI 299 (871)
Q Consensus 294 ~i~i~~ 299 (871)
.|.+|.
T Consensus 421 kikvWd 426 (499)
T KOG0281|consen 421 KIKVWD 426 (499)
T ss_pred eEEEEe
Confidence 999993
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.6e-27 Score=227.62 Aligned_cols=280 Identities=19% Similarity=0.278 Sum_probs=247.8
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
..++++...|..+.+++|+.|..+.++|..+++.+..+++|...|+.+.++|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46899999998788999999999999999999999999999999999999999999999999999999999887777888
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee-cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 96 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
..|..+|+.+..+|+|.||++++.||...+.|++++........ ...-.+++..|+| |+.+|.+|+.||.++|||+.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence 89999999999999999999999999999999999855544433 2334589999999 999999999999999999999
Q ss_pred CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc-cCeEEEEEcCCCCEEEEEECCCcE
Q 002881 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHPELPIIITGSEDGTV 253 (871)
Q Consensus 175 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~i~~~p~~~~l~~~~~dg~v 253 (871)
+.....+.+|.++|..++|+.+|- +++++++|+.|++||++..+...++.... ..+.+++|.+.|.+++.++.|=.|
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY--~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGY--WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCCCCCceeEEEeccCce--EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 999999999999999999998876 89999999999999999877766665332 369999999999999999887667
Q ss_pred EEEeCC--CCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 254 RIWHAT--TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 254 ~iwd~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
++++-. .++.+..+..+.+..+++.|....+++++++.|..+++.
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 766633 566778888888889999999999999999999887663
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=3.7e-27 Score=242.64 Aligned_cols=282 Identities=21% Similarity=0.372 Sum_probs=246.6
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCcee--EEeeecCCCEEE-EEEeC-CCCEEEEEeCCC
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRS-AKFVA-RKQWVVAGADDM 79 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg 79 (871)
..++.+.+.+|+..|..++..+.. ++++++.||++++|+-..++.. ..+.+|.+-|.+ +++.+ ++-.+++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778899999999999987655 7899999999999997555443 346667776666 77775 555699999999
Q ss_pred eEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
+|.+|...+..+..++++|...|.|+....++. +++||.|.++++|-... +...+.+|+..|+++..-| .+.++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~--e~~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLP--ENTYV 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecC--CCcEE
Confidence 999999999999999999999999999888876 99999999999998764 4556899999999999998 34999
Q ss_pred EEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 002881 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p 239 (871)
+|+.|.+|++|.- ++...++.+|...|..+++-+++. +++++.||.|++|++ +|.++..+.+|.+-|.+++..+
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 9999999999974 778889999999999999998875 999999999999998 6999999999999999999888
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
++..++++++|++++||+.. .+.+.+..+...+|++.+-++|. |++|++||.+++|...
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 88899999999999999855 78888888888999999998876 7889999999998443
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.5e-28 Score=217.38 Aligned_cols=242 Identities=19% Similarity=0.325 Sum_probs=210.5
Q ss_pred CCCEEEEEEcCC-CCEEEEEEcCCeEEEEeCCC-CceeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcE
Q 002881 15 SERVKSVDLHPS-EPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 15 ~~~v~~i~~s~~-~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
.+.+..++|++. ...+++++.||+++|||... ..+++.++.|+..|.++.|++. +..+++++-|++|++|+.+-.+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 567899999995 45788888899999999543 3577888899999999999984 55677888999999999999999
Q ss_pred EEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
+.++.+|...|...+|+|. .+.++++|.||.+++||++...+. ..+..|...|.++.|+.-+.+.+++|+.|+.|+.|
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999995 678999999999999999976333 34788999999999999889999999999999999
Q ss_pred ECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCC-CCEEEEE
Q 002881 171 NLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPE-LPIIITG 247 (871)
Q Consensus 171 d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~i~~~p~-~~~l~~~ 247 (871)
|+++- .++..+.+|.-.|..+.|+|.... +|++++.|-++++||...+ ..+.+...|+.-+..+.|++- ..+++++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~-lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHAS-LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhh-HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 99875 578889999999999999998765 8999999999999998743 456666778888999999984 4589999
Q ss_pred ECCCcEEEEeC
Q 002881 248 SEDGTVRIWHA 258 (871)
Q Consensus 248 ~~dg~v~iwd~ 258 (871)
+.|+.++||+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999983
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-27 Score=244.60 Aligned_cols=244 Identities=22% Similarity=0.315 Sum_probs=220.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeee-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 92 (871)
+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.. |...|-+++|+ +..+.+|+.++.|..+|+...+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378999999999999999999999999999999999999998 99999999998 677999999999999999887665
Q ss_pred EE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE--CCCcEEE
Q 002881 93 KV-FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS--LDRTIKI 169 (871)
Q Consensus 93 ~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i 169 (871)
.. +.+|...|..+.|++++.++++|+.|+.+.|||.... .....+..|...|..++|+|-..++||+|+ .|++|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 44 7899999999999999999999999999999999665 677788899999999999998889999965 5899999
Q ss_pred EECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
||..++..+..+. ....|.++.|++..+..+...|..++.|.||++.+.+.+..+.+|...|..++++|+|..+++|+.
T Consensus 373 wn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 9999988777665 467899999999987634444667889999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCC
Q 002881 250 DGTVRIWHATTY 261 (871)
Q Consensus 250 dg~v~iwd~~~~ 261 (871)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999998764
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.9e-27 Score=219.07 Aligned_cols=286 Identities=17% Similarity=0.281 Sum_probs=235.6
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC------------C------ceeEEeeecCCCEEEEEEeCCCCE
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------------Q------TMAKSFEVTELPVRSAKFVARKQW 71 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~ 71 (871)
.++.|..++.+-+|||||.++|+|+.|-.|+|.|++. + -.++++-.|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4667999999999999999999999999999999861 1 255677779999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE---EeecCCcceE
Q 002881 72 VVAGADDMFIRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ---IFEGHSHYVM 146 (871)
Q Consensus 72 l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~ 146 (871)
|++|+.|++|++||+......+.++ ....+|+++.|+|.|.+|++|++-..+++||+++- ++.. .-.+|+..|+
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAIT 265 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCccccccccee
Confidence 9999999999999987543322222 24568999999999999999999999999999986 3322 2346889999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe-cCC-CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEE
Q 002881 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224 (871)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 224 (871)
++.+++ .+++.++++.||.|++||--+++++.++. .|. ..|.+..|..+++ |+++.+.|..+++|.+.+++++..
T Consensus 266 ~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k--yiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 266 QVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK--YILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe--EEeecCCcceeeeeeecCCceEEE
Confidence 999999 89999999999999999998888887764 444 4678888888877 999999999999999999999988
Q ss_pred ecCcc-----cCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEe-cCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 225 LEGHT-----HNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 225 ~~~~~-----~~v~~i~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
..+.. .--+...|+....+++.-. ..+.+.-||.++......+. +|.+.+..+.-+|.+.-+.++++|-..++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 86531 1124456777667766544 34678999999887655443 56789999999999999999999999999
Q ss_pred ec
Q 002881 298 KI 299 (871)
Q Consensus 298 ~~ 299 (871)
|-
T Consensus 423 Wy 424 (430)
T KOG0640|consen 423 WY 424 (430)
T ss_pred ee
Confidence 83
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-27 Score=241.95 Aligned_cols=276 Identities=17% Similarity=0.296 Sum_probs=236.5
Q ss_pred EEEEcC-CCCEEEEEEcCCeEEEEeCCCCc------eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--c
Q 002881 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQT------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--D 90 (871)
Q Consensus 20 ~i~~s~-~~~~la~~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~ 90 (871)
.+..++ .+++|++|+.||.|++|+..... ....++.|..-|+.+....+|+.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 444443 56689999999999999976432 25567889999999999999999999999999999999876 5
Q ss_pred EEEEEccCCCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCce---------EEEEee-cCCcceEEEEEecCCCCEEE
Q 002881 91 KVKVFEAHTDYIRCVAV-HPTLPYVLSSSDDMLIKLWDWEKGWM---------CTQIFE-GHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 91 ~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~-~~~~~v~~~~~~p~~~~~l~ 159 (871)
+..++..|.++|.|++. -++...+++||-|+.|.+||++++.. ....+. ++...|++++.++ .+..++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEE
Confidence 67788899999999999 78888999999999999999996621 112223 7888999999999 678999
Q ss_pred EEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 002881 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p 239 (871)
+|+..+.+++||.++.+.+..+.+|...|.++..+++|. .++++++||+|++||+...+++.++..|...|+++..+|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCC--eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 999999999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+-..+.+|+.||.|..=|+++......+-....+|..+..+...+.+-+++.|+.|.-|
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 99999999999999999999865444444455667777777655556778888888777
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.1e-26 Score=247.53 Aligned_cols=270 Identities=26% Similarity=0.436 Sum_probs=244.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEE-eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 92 (871)
+...+.+..|+ ..++++++.+++|++|+..++..+.. +.+|.+.|.++++..-+..+++|+.|.++++||..+|.+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888998 45689999999999999999998888 9999999999999888899999999999999999999999
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002881 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (871)
Q Consensus 93 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (871)
.++.+|.+.|.++...+ ..+++|+.|.+|++|++.++ ....++.+|..+|.++..+ +.++++|+.|++|++||.
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEh
Confidence 99999999999998865 46888899999999999988 7888888899999999986 689999999999999999
Q ss_pred CCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEEECCC
Q 002881 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg 251 (871)
..++++..+.+|...|.++.+.+. . .+++|+.|+.|++||+.++ +++.++.+|..-+..+.+ .+++|++++.||
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~-~--~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSE-N--RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCc-c--eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccc
Confidence 999999999999999999977553 2 7999999999999999999 999999999988866555 457899999999
Q ss_pred cEEEEeCCCCeEEEEEec-CCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 252 TVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+|++||..+++.+.++.. +.+.|..+++. ...+++++.+|.+.+|
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLW 479 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEE
Confidence 999999999999999988 56788888876 4678999999999998
No 95
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=6.1e-28 Score=217.80 Aligned_cols=248 Identities=23% Similarity=0.368 Sum_probs=217.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
.-++.||.+.|.+...+.+-..-|+++.|-+-+|||.-+|..+.++. |+.-|.+++|+.|.++|++|+.+..++|||++
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 44688999999999999998888999999999999999999999887 88899999999999999999999999999998
Q ss_pred CCc-EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 88 TMD-KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 88 ~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
..+ +...+.+|.+.|+.+-|....+.|++++.|++|++||.+++....... .+.+|+++..++ ++.++.++ ..+.
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~-dG~ilTia-~gss 206 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQ-DGRILTIA-YGSS 206 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeecc-CCCEEEEe-cCce
Confidence 654 456678999999999999999999999999999999999995444443 345699999998 67666554 4678
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEe-cCcccCeEEEEEcCCCCEEE
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELPIII 245 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~i~~~p~~~~l~ 245 (871)
|.+||..+...+.... .+..|.+.+.+|+.. ++++|+.|..++.||+.++..+..+ ++|.++|.|+.|+|+|...+
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~--~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKE--FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCc--eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceee
Confidence 9999999888776654 456688888888875 8999999999999999999998885 89999999999999999999
Q ss_pred EEECCCcEEEEeCCCCeE
Q 002881 246 TGSEDGTVRIWHATTYRL 263 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~ 263 (871)
+||+||+|++|.+..++.
T Consensus 284 sGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCceEEEEEecCCCc
Confidence 999999999998776553
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-27 Score=249.30 Aligned_cols=285 Identities=17% Similarity=0.295 Sum_probs=215.3
Q ss_pred hhcc-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEE-------------EEEeC-----CC
Q 002881 9 RKLA-QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS-------------AKFVA-----RK 69 (871)
Q Consensus 9 ~~~~-~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-------------~~~~~-----~~ 69 (871)
+.+. .|.+.|.++.||+||+|||+||.||.|+||.+...+... .+.+.-.+ +.-++ ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---ccccccchhhhhhhhccccCccccccccccccc
Confidence 3455 899999999999999999999999999999986533211 11111111 11111 01
Q ss_pred CEEEEEeCCCeEEEEECC----CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcce
Q 002881 70 QWVVAGADDMFIRVYNYN----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV 145 (871)
Q Consensus 70 ~~l~~~~~dg~i~iw~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 145 (871)
...-.+..... .+.+.. ..+++..+.+|.+.|..+.||.++ +|++++.|.+|++|++... .+...|. |...|
T Consensus 337 s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfV 412 (712)
T KOG0283|consen 337 SSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFV 412 (712)
T ss_pred cccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-ceeeEEe-cCCee
Confidence 11112222222 222221 236677889999999999999865 9999999999999999976 6777765 99999
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
+|++|+|.|.++|++|+.||.|++|++...+. ..+..-..-|++++|.|+|+ +.++|+.+|.+++|+....+.....
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V-v~W~Dl~~lITAvcy~PdGk--~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKV-VDWNDLRDLITAVCYSPDGK--GAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCee-EeehhhhhhheeEEeccCCc--eEEEEEeccEEEEEEccCCeEEEee
Confidence 99999999999999999999999999976554 34444558899999999988 7999999999999999876655443
Q ss_pred cC--------cccCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEecCC--ccEEEEEEeeCCCeEEEEEcCCe
Q 002881 226 EG--------HTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 226 ~~--------~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
.. ....|+++.|.|... .|++.+.|..|||+|.++..++..+.+.. ..-....|+.||++|++|++|..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 21 122799999998654 57888899999999998777777776442 34457789999999999999999
Q ss_pred EEEecCCCc
Q 002881 295 IMVKIGREE 303 (871)
Q Consensus 295 i~i~~~~~~ 303 (871)
|++|.....
T Consensus 570 VYiW~~~~~ 578 (712)
T KOG0283|consen 570 VYIWKNDSF 578 (712)
T ss_pred EEEEeCCCC
Confidence 999965443
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.9e-25 Score=195.86 Aligned_cols=280 Identities=20% Similarity=0.270 Sum_probs=229.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC------Cc---------eeEEeeecCCCEEEEEEeCCCCEEEEEeCC
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QT---------MAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~------~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 78 (871)
.+..|.+++|+|.|.+.|+|+...+.+|--+.. +. ..+.-+.|.+.|.|.+|+|+|..|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 567899999999999999999999988875422 10 112334588999999999999999999999
Q ss_pred CeEEEEECCCCcE-----EEEEccCCCCeEEEEEcCC----CCEEEEEE-CCCeEEEEECCCCceEEEEeecCCcceEEE
Q 002881 79 MFIRVYNYNTMDK-----VKVFEAHTDYIRCVAVHPT----LPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (871)
Q Consensus 79 g~i~iw~~~~~~~-----~~~~~~~~~~i~~i~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 148 (871)
.+|++..++...+ -..+.-|.+.|+.++|-.+ +..|++++ .|..|++-|...+ ...+.+.+|++.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEE
Confidence 9999987654322 2356679999999999753 34566654 3667777788877 6678889999999886
Q ss_pred -EEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec--C-----CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc
Q 002881 149 -TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--H-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS 220 (871)
Q Consensus 149 -~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-----~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 220 (871)
.| ++-++++|+.|.+|++||++-..++.++.. | ...|..++..|.|. ++++|-.|....+||++.++
T Consensus 190 ysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr--ll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 190 YSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR--LLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc--eeeeccCCCceEEEEeeCCc
Confidence 35 468999999999999999998877766532 1 25688899988887 89999999999999999999
Q ss_pred eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEE
Q 002881 221 CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (871)
Q Consensus 221 ~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~ 296 (871)
+++.+..|...|.++.|+|...++++|+.|..|++-|+... -.+..+..|.+.+..+.|+|..-.+++.+.|.+..
T Consensus 265 ~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 265 MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 99999999999999999999999999999999999997632 13445566778899999999999999999999999
Q ss_pred Eec
Q 002881 297 VKI 299 (871)
Q Consensus 297 i~~ 299 (871)
+|.
T Consensus 345 lwa 347 (350)
T KOG0641|consen 345 LWA 347 (350)
T ss_pred Eec
Confidence 883
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.4e-27 Score=217.03 Aligned_cols=289 Identities=18% Similarity=0.279 Sum_probs=247.6
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
.+.+.+.+.||.+.|..++-....+.+.+++.|.+-+||.+++|..+..+.+|.+.|++++|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC----------------------------------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 002881 84 YNY------NT----------------------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (871)
Q Consensus 84 w~~------~~----------------------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 123 (871)
|.. .. ..++..+.+|...|.+..|-..|+.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 962 00 01345577899999999999999999999999999
Q ss_pred EEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEE
Q 002881 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (871)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l 202 (871)
.+||++++ .....+.+|....+.++-+| ...++++++.|.+.++||.+.. ..+..+++|...|+++.|..+.+ +
T Consensus 297 nlwDVEtg-e~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---v 371 (481)
T KOG0300|consen 297 NLWDVETG-EVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---V 371 (481)
T ss_pred eeeeeccC-ceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc---e
Confidence 99999999 88899999999999999999 7889999999999999999853 34567899999999999987765 9
Q ss_pred EEEeCCCeEEEEECCCCc-eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE----EEecCCccEEEE
Q 002881 203 ITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN----TLNYGLERVWAI 277 (871)
Q Consensus 203 ~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~i~~i 277 (871)
++|++|.+|++||+++.+ ++.+++ ...++..++.+..+++++.--.+..|++||++..++.. .-+.|..-|.|+
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred eecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence 999999999999999754 566666 56788999999999999999999999999988555322 334566678999
Q ss_pred EEeeCC--CeEEEEEcCCeEEEe
Q 002881 278 GYMKSS--RRIVIGYDEGTIMVK 298 (871)
Q Consensus 278 ~~~~~~--~~l~~g~~dg~i~i~ 298 (871)
+|..+. ..|.+++-|..+.-|
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eccccCcccccccccccceeeee
Confidence 997653 335556666666555
No 99
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.4e-24 Score=223.37 Aligned_cols=537 Identities=15% Similarity=0.202 Sum_probs=331.9
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEc
Q 002881 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 19 ~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~ 96 (871)
..++-.|-..++|. -....|.+||.+..+..+.+..+..+++|++|+++|+++++|- ....++||++..-..+..|.
T Consensus 41 ~gLa~~p~Sgl~aY-pAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfv 119 (1080)
T KOG1408|consen 41 NGLASVPCSGLCAY-PAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFV 119 (1080)
T ss_pred Ccccccccccceee-ccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhh
Confidence 34555665544433 2245799999988887777888889999999999999999985 56789999999888888899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
.|.-.++|++|+|.++|+++.+. |..|.+||++.+... .-..-...|..++|+. ++.++++++ +..|++|.+..
T Consensus 120 dHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~--asnkiss~Vsav~fsE-dgSYfvT~g-nrHvk~wyl~~ 195 (1080)
T KOG1408|consen 120 DHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSG--ASNKISSVVSAVAFSE-DGSYFVTSG-NRHVKLWYLQI 195 (1080)
T ss_pred hccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccc--cccccceeEEEEEEcc-CCceeeeee-eeeEEEEEeec
Confidence 99999999999999999997765 788999999865222 2223456789999998 888998876 58999999865
Q ss_pred CCCeE-----------------------------------EEe--c-----------------CCCCeeEEEEeecCCcC
Q 002881 175 PDPNF-----------------------------------TLD--A-----------------HQKGVNCVDYFTGGDKP 200 (871)
Q Consensus 175 ~~~~~-----------------------------------~~~--~-----------------~~~~i~~i~~~~~~~~~ 200 (871)
++... .+. + ....-+||+.+ ..
T Consensus 196 ~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r 271 (1080)
T KOG1408|consen 196 QSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SR 271 (1080)
T ss_pred cccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cc
Confidence 44100 000 0 00112344443 23
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecC------------------------cccCeEEEEEcCCCCEEEEEECCCcEEEE
Q 002881 201 YLITGSDDHTAKVWDYQTKSCVQTLEG------------------------HTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (871)
Q Consensus 201 ~l~~~~~dg~i~v~d~~~~~~~~~~~~------------------------~~~~v~~i~~~p~~~~l~~~~~dg~v~iw 256 (871)
+|++|+.+|.|++|+..+-....++.. ..-...++.|+|....|.+.-.|..+++|
T Consensus 272 ~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvW 351 (1080)
T KOG1408|consen 272 LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVW 351 (1080)
T ss_pred eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEE
Confidence 899999999999999765433222210 01123467899988899999999999999
Q ss_pred eCCCCeE---EEEEecCCccEEEEEEeeC-----------CCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecce
Q 002881 257 HATTYRL---ENTLNYGLERVWAIGYMKS-----------SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEI 322 (871)
Q Consensus 257 d~~~~~~---~~~~~~~~~~i~~i~~~~~-----------~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (871)
|++.-.. ...+-.|...||++..-|- ...+++++.||+|++|....-. ++.++.. .+
T Consensus 352 DvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct------nn~vyrR---Ni 422 (1080)
T KOG1408|consen 352 DVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT------NNQVYRR---NI 422 (1080)
T ss_pred eccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc------ccceeec---cc
Confidence 9986543 3345567778888765551 2347899999999999543211 1111000 00
Q ss_pred EEEEEeecCcceeccCCCee-------eeeeee---cCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----c
Q 002881 323 QTVNIKSVGADYEVTDGERL-------PLAVKE---LGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----N 386 (871)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~-----~ 386 (871)
...++.. +...|+... ++.-+. .-.....+++++++|+|++||.+. .|++.+|+....+ .
T Consensus 423 ls~~l~k----i~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e 498 (1080)
T KOG1408|consen 423 LSANLSK----IPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME 498 (1080)
T ss_pred chhhhhc----CccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee
Confidence 0000000 001111100 000000 112233567999999999999998 7999999987764 3
Q ss_pred cCcCceeEEEEecC---CcEEEEec-CCeEEEeeccc--ccceeeec-Cccceee---e--cCcEEEEEeCCeEEEEecc
Q 002881 387 RSFGSALEFVWSSD---GEYAVRES-SSKIKIFSKNF--QEKRSVRP-TFSAERI---Y--GGTLLAMCSNDFICFYDWA 454 (871)
Q Consensus 387 ~~~~~~~~~~~s~~---~~~~~~~~-~~~i~i~~~~~--~~~~~~~~-~~s~~~i---~--~~~~La~~~~~~v~~~d~~ 454 (871)
.+-..+.++.||.. .++++.++ +.-|.|||... ...+++.- .-+...+ . +...+++++.|....|+..
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence 44567888888832 25677777 67799998432 11111111 1111111 1 1356777777755555554
Q ss_pred C----CcEEEEEE-----cceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeee-eeE
Q 002881 455 E----CRLIRRID-----VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHET-NER 524 (871)
Q Consensus 455 ~----~~~~~~~~-----~~i~~i~~s~~~~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~ 524 (871)
. +.+.-+.. ..+..|+..|+..++++++.|+.+.++. +++ ....+.|.--..- +..
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~--------i~s------gKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD--------IES------GKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe--------ccc------cceeeeecccccCCCce
Confidence 3 33322221 3678899999999999999998887651 111 1111222211110 222
Q ss_pred EEeeEEec--cEEEEEccCCeEEEEE---CCeEeEEEecccceEEEEEeeeCCEEEEEecCCceEEEEecchh
Q 002881 525 VRTGLWVG--DCFIYNNSSWRLNYCV---GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSL 592 (871)
Q Consensus 525 i~~~~w~~--~~~i~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~ 592 (871)
|+- ..+. ..+...-+...|.++- +.-+.........+.=+.+.++...|.-+.-+|-++.|.+.+.+
T Consensus 645 IKv-~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 645 IKV-ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred EEE-EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence 221 1222 2233333333444332 33333333333344445566777788888889999999987644
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.5e-25 Score=205.55 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=211.0
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKL 125 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i 125 (871)
++.+.+....+.|+++.|+++|..+++++.|..+++||..+++.++++..+.-.+..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344556656788999999999999999999999999999999999999988888999999887777777776 889999
Q ss_pred EECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEE
Q 002881 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
.++.++ +..+.+.+|...|.+++.+| .+..|++++.|++|++||++..++...+.....+ .++|.|.|- +++++
T Consensus 85 Lsl~dN-kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GL--ifA~~ 158 (311)
T KOG1446|consen 85 LSLHDN-KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGL--IFALA 158 (311)
T ss_pred EEeecC-ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCc--EEEEe
Confidence 999988 88999999999999999999 6799999999999999999988887776654444 578888876 77777
Q ss_pred eCCCeEEEEECCC--CceEEEecC---cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCcc---EEEE
Q 002881 206 SDDHTAKVWDYQT--KSCVQTLEG---HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER---VWAI 277 (871)
Q Consensus 206 ~~dg~i~v~d~~~--~~~~~~~~~---~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---i~~i 277 (871)
.....|++||+++ +.+..++.. .....+.+.|+|+|++++.++..+.+++.|.-+|....++..+... .-+.
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 7777999999986 345455443 3567899999999999999999999999999999988888766432 2578
Q ss_pred EEeeCCCeEEEEEcCCeEEEecC
Q 002881 278 GYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 278 ~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
+|+||++++.+|++||++.+|..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEc
Confidence 89999999999999999999844
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=227.32 Aligned_cols=238 Identities=22% Similarity=0.323 Sum_probs=207.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (871)
..+|.+++|+|..++=++....-.+.+|+..+....+.+....+.+.++.|..||++|+.|...|.|+++|..+ +.+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHH
Confidence 46899999999766533333445799999998888888888888999999999999999999999999999655 36777
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 137 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
.+..|+.++..+.|+|.++..|++|+.|+.+++||+.+......+.+|...|.|.+|+|..+. ++++|+.||.|++||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEEe
Confidence 888999999999999999999999999999999999988876688999999999999997654 8999999999999999
Q ss_pred CCC-ceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEEecCCccEEEEEEeeCCCeEEEEEcCCe
Q 002881 217 QTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 217 ~~~-~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
+.. ..+.++. |..+|..+.+-|.|..+++++. ..|++||+.+|. .+.....|...|+|+.+..++..|++|+-||.
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 987 5566665 9999999999999999999885 589999998655 44455558899999999999999999999999
Q ss_pred EEEe
Q 002881 295 IMVK 298 (871)
Q Consensus 295 i~i~ 298 (871)
+.++
T Consensus 262 VKVf 265 (487)
T KOG0310|consen 262 VKVF 265 (487)
T ss_pred eEEE
Confidence 9886
No 102
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=8e-25 Score=237.30 Aligned_cols=245 Identities=16% Similarity=0.254 Sum_probs=191.4
Q ss_pred EEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc--------EEEEEccCCCCeE
Q 002881 33 SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMD--------KVKVFEAHTDYIR 103 (871)
Q Consensus 33 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~i~ 103 (871)
|+..|.|.+|+......+..+.+|.++|.+++|+|+ +++|++|+.||.|++|++.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 344778999998887788889999999999999997 7899999999999999997642 3446788999999
Q ss_pred EEEEcCCCCE-EEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe
Q 002881 104 CVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182 (871)
Q Consensus 104 ~i~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 182 (871)
+++|+|++.. |++++.|+.|++||++++.. ...+. |...|.+++|+| ++++|++++.|+.|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 9999999876 46899999999999998843 33333 567899999999 88999999999999999999999888899
Q ss_pred cCCCCeeEEEE-----eecCCcCEEEEEeCCC----eEEEEECCC-CceEEEecC--cccCeEEEEEcCCCCEEEEEECC
Q 002881 183 AHQKGVNCVDY-----FTGGDKPYLITGSDDH----TAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSED 250 (871)
Q Consensus 183 ~~~~~i~~i~~-----~~~~~~~~l~~~~~dg----~i~v~d~~~-~~~~~~~~~--~~~~v~~i~~~p~~~~l~~~~~d 250 (871)
+|.+.+.+..+ ++++. ++++++.++ .|++||+++ +.++..+.. +.+.+......+++.++++|+.|
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~--~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDN--YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred cccCCceeEEEEeeeEcCCCC--EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 99877654433 34444 788877664 799999995 555555432 23333334445568899999999
Q ss_pred CcEEEEeCCCCeEEEEEec--CCccEEEEEEeeCC
Q 002881 251 GTVRIWHATTYRLENTLNY--GLERVWAIGYMKSS 283 (871)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~--~~~~i~~i~~~~~~ 283 (871)
+.|++|++..+.. ..+.. +..++.+++|.|..
T Consensus 285 ~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9999999987642 22221 34567788888864
No 103
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.8e-25 Score=240.46 Aligned_cols=227 Identities=14% Similarity=0.224 Sum_probs=184.5
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCC-------ceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002881 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 80 (871)
.+.+|++.|.+++|+| ++.+|++|+.||+|+|||+.++ ..+..+.+|...|.+++|+|++ +.|++|+.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4679999999999999 8889999999999999999765 3466788999999999999985 68999999999
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcc-eEEEEEecCCCCEEE
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNPKDTNTFA 159 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~ 159 (871)
|+|||+.+++....+..|.+.|.+++|+|++.+|++++.|+.|++||++++ .....+.+|.+. +..+.|.| +.+.++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~-~~~~iv 227 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAK-RKDLII 227 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcC-CCCeEE
Confidence 999999999999999999999999999999999999999999999999988 455666777654 45678998 555665
Q ss_pred EEE----CCCcEEEEECCCCCC-eEEEecC-CCCeeEEEEeecCCcCEEEEEe-CCCeEEEEECCCCceEEEecC-cccC
Q 002881 160 SAS----LDRTIKIWNLGSPDP-NFTLDAH-QKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEG-HTHN 231 (871)
Q Consensus 160 ~~~----~dg~i~i~d~~~~~~-~~~~~~~-~~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~-~~~~ 231 (871)
+++ .|+.|++||+++... ......+ ...+....|+++++ ++++++ .|+.|++||+.++.++..... +..+
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~--~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~ 305 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN--LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP 305 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC--EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence 543 478999999987653 3333323 23455566777776 677766 599999999998887665543 3446
Q ss_pred eEEEEEcCC
Q 002881 232 VSAVCFHPE 240 (871)
Q Consensus 232 v~~i~~~p~ 240 (871)
+.+++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 778888875
No 104
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.8e-26 Score=218.91 Aligned_cols=248 Identities=22% Similarity=0.367 Sum_probs=212.8
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCC---EEEEEEcCCeEEEEeCCCCcee----EEeeecCCCEEEEEEeCCCCEEEEEeC
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMA----KSFEVTELPVRSAKFVARKQWVVAGAD 77 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~---~la~~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~ 77 (871)
.+...++.||+++|.+++|....+ .+++++.|.++++|.++.++.. +...+|+.+|.++...++|..+++|+.
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~ 213 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW 213 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc
Confidence 455677889999999999875444 5999999999999998877533 334589999999999999999999999
Q ss_pred CCeEEEEECC-------------------------CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 002881 78 DMFIRVYNYN-------------------------TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (871)
Q Consensus 78 dg~i~iw~~~-------------------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~ 132 (871)
|.+|.||+.. ++.++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 9999999931 1235667789999999999998 5689999999999999999984
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC---CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC
Q 002881 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
....+. ....+.++..+| ..+++++|+.|..|++||.+++. ..+++.+|..-|..+.|+|.... .+++|+.|+
T Consensus 293 -~~~~~~-~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-~~~S~S~D~ 368 (423)
T KOG0313|consen 293 -LKSTLT-TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-QLVSGSYDN 368 (423)
T ss_pred -ceeeee-cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-EEEEEecCC
Confidence 444333 335689999999 89999999999999999998764 45678899999999999998765 899999999
Q ss_pred eEEEEECCCCc-eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 210 TAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 210 ~i~v~d~~~~~-~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
++++||+++.. ++..+.+|...|.++.|... ..+++||.|.+|+|+..
T Consensus 369 t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKG 417 (423)
T ss_pred eEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEecc
Confidence 99999999876 89999999999999999864 58999999999999864
No 105
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=242.14 Aligned_cols=247 Identities=27% Similarity=0.464 Sum_probs=223.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
...+.||.+.|.++++..-+..|++|+.|.+++|||..+|....++.+|.+.|.++.. .+..+++|+.|.+|++|++.
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEecc
Confidence 3448899999999999988889999999999999999999999999999999999876 44568888999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
++..+..+.+|.++|.++..+ +.++++|+.||.|++||+.++ .+...+.+|..+|.++.+.+ . +.+++|+.|++|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecC-c-ceEEeeeeccce
Confidence 999999999999999999998 789999999999999999988 88999999999999998875 2 899999999999
Q ss_pred EEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC-cccCeEEEEEcCCCCEEE
Q 002881 168 KIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPIII 245 (871)
Q Consensus 168 ~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~i~~~p~~~~l~ 245 (871)
++||+++. +++..+..|..-+..+.+. ++ ++++++.|+.|++||..+++++.++.+ |...|+.+++. ...++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il 468 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVSSLLLR--DN--FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEIL 468 (537)
T ss_pred EeecCCchhhhhhhhcCCcccccccccc--cc--eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEE
Confidence 99999999 8999999998888766653 23 799999999999999999999999998 67888888877 45789
Q ss_pred EEECCCcEEEEeCCCCeEEEEE
Q 002881 246 TGSEDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~ 267 (871)
+++.||.+++||+.+++....+
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEecCCeeEEEecccCchhhhh
Confidence 9999999999999999877765
No 106
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6e-27 Score=218.89 Aligned_cols=245 Identities=17% Similarity=0.301 Sum_probs=220.8
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
..+--+.++|.|+.||.|...||+|+.||.|+||.+.+|..++.|. .|...|+|+.|+.|+..+.+++.|.++++.-++
T Consensus 257 d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 257 DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence 3444578899999999999999999999999999999999999887 799999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee--cCCcceEEEEEecCCCCEEEEEECCC
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (871)
+|++++.+++|++.|+...|+++|.++++++.||+|++|+..+. .+..++. +...+|.++..-|+++..++++....
T Consensus 337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 99999999999999999999999999999999999999999987 5665554 34567889999998999999999999
Q ss_pred cEEEEECCCCCCeEEEec---CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCC
Q 002881 166 TIKIWNLGSPDPNFTLDA---HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~ 242 (871)
+|.+.++. ++.++.+.. ..+...+...+|.|+ ++.+.+.|+.++.|.+.+|....++..|...+..++-+|..+
T Consensus 416 tv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe--wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 416 TVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE--WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred eEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc--EEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 99999985 455666643 234566777888887 899999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEe
Q 002881 243 IIITGSEDGTVRIWH 257 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd 257 (871)
.+++-++||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 999999999999995
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-26 Score=234.41 Aligned_cols=229 Identities=23% Similarity=0.439 Sum_probs=204.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc------EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEEee
Q 002881 67 ARKQWVVAGADDMFIRVYNYNTMD------KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFE 139 (871)
Q Consensus 67 ~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~ 139 (871)
|.+++|++|+.||.|++|+..... .+..++.|.+.|..+....+++.|+++|.|-+|++|+...+. .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 456779999999999999976432 256778999999999999999999999999999999998763 5667888
Q ss_pred cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC----------eEEE-ecCCCCeeEEEEeecCCcCEEEEEeCC
Q 002881 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP----------NFTL-DAHQKGVNCVDYFTGGDKPYLITGSDD 208 (871)
Q Consensus 140 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~d 208 (871)
.|..+|.|+++..++...+++|+.|+.|.+||++++.. ...+ .++..+|.+++.++.+. .+++|+.+
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t--~ivsGgte 192 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTE 192 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce--EEEecCcc
Confidence 99999999999444888999999999999999987632 1122 26778899999988886 79999999
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEE
Q 002881 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (871)
Q Consensus 209 g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 288 (871)
+.+++||.++++.+..+++|..+|..+..+++|..++++|+||+|++||+...+++.++..|...||++..+|+-..+.+
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEE
Q 002881 289 GYDEGTIMV 297 (871)
Q Consensus 289 g~~dg~i~i 297 (871)
|+.||.|+.
T Consensus 273 G~rd~~i~~ 281 (735)
T KOG0308|consen 273 GGRDGNIYR 281 (735)
T ss_pred cCCCCcEEe
Confidence 999999876
No 108
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=5.7e-26 Score=223.68 Aligned_cols=246 Identities=24% Similarity=0.403 Sum_probs=207.6
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCc----------eeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002881 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT----------MAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 80 (871)
.|.+.|..+..-|+.+ .+|+.+..+.|.|||+.+.. +...+.+|...-..+.|++.. -.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4899999999999776 55667778999999986532 222677888878889999854 46889999999
Q ss_pred EEEEECCCCc-------EEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCC-CceEEEEeecCCcceEEEEEe
Q 002881 81 IRVYNYNTMD-------KVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEK-GWMCTQIFEGHSHYVMQVTFN 151 (871)
Q Consensus 81 i~iw~~~~~~-------~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~ 151 (871)
|++||++... +...+.+|.+.|..++|++. ...++++++|+.+.|||.++ .........+|...|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999987432 34567899999999999995 45788999999999999995 336667788999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-----------
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------- 219 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~----------- 219 (871)
|.++.+||+|+.|++|.+||+|+. .+..++.+|...|.++.|+|.... ++++++.|+.+.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et-vLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET-VLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc-eeEecccCCcEEEEeccccccccChhhhcc
Confidence 999999999999999999999985 467888999999999999998765 8999999999999998631
Q ss_pred ---ceEEEecCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCC
Q 002881 220 ---SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (871)
Q Consensus 220 ---~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~ 259 (871)
+.+....||...|..+.|+|+.+ .|++.++|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23466778999999999999988 56678899999999875
No 109
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.4e-25 Score=242.25 Aligned_cols=283 Identities=21% Similarity=0.343 Sum_probs=234.7
Q ss_pred CCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCC------------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 002881 57 ELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNT------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 122 (871)
+..|.++..+|+|..+++|+ .||.++||+.+. .+.+.++..|.+.|.|+.|+|||++||+||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 45689999999999999999 799999998752 2334566789999999999999999999999999
Q ss_pred EEEEECCC-----------------CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCC
Q 002881 123 IKLWDWEK-----------------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (871)
Q Consensus 123 i~iwd~~~-----------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 185 (871)
|.||.... .++....+.+|...|..++|+| ++.++++++.|++|.+|+..+.+....+.+|.
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeeccc
Confidence 99999772 1456778899999999999999 89999999999999999999999999999999
Q ss_pred CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc------CeEEEEEcCCCCEEEEEE----CCCcEEE
Q 002881 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------NVSAVCFHPELPIIITGS----EDGTVRI 255 (871)
Q Consensus 186 ~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~v~~i~~~p~~~~l~~~~----~dg~v~i 255 (871)
+.|..+.|.|-|+ |+++-++|++|++|++.+....+.+.++.. -+..+.|+|||.+|++.. .-.++.|
T Consensus 172 s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 172 SLVKGVSWDPIGK--YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccceEECCccC--eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 9999999999998 999999999999999887777777765433 367899999999999763 2346889
Q ss_pred EeCCCCeEEEEEecCCccEEEEEEeeC-----CC------------eEEEEEcCCeEEEecCCCc-ceEEEeCCCcEEEE
Q 002881 256 WHATTYRLENTLNYGLERVWAIGYMKS-----SR------------RIVIGYDEGTIMVKIGREE-PVASMDNSGKIIWA 317 (871)
Q Consensus 256 wd~~~~~~~~~~~~~~~~i~~i~~~~~-----~~------------~l~~g~~dg~i~i~~~~~~-~~~~~~~~~~~~~~ 317 (871)
.+-.+++.-..+-+|..++.++.|+|. .+ .+|+|+.|+++.+|..... |+...
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--------- 320 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--------- 320 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh---------
Confidence 998888888899999999999999873 11 6788999999999954322 11110
Q ss_pred eecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002881 318 KHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (871)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~ 382 (871)
.++ ....+..++|+|||..|.+|+ ||++.++...
T Consensus 321 -----------------------------~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 321 -----------------------------HNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred -----------------------------hhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 000 111345899999999888888 9999988543
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=220.67 Aligned_cols=286 Identities=15% Similarity=0.252 Sum_probs=233.0
Q ss_pred eEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002881 50 AKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~ 128 (871)
+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..+..++.+|.+.|..|+++. ..++++++|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34567899999999999987 7899999999999999999999999999999999999987 57999999999999998
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC
Q 002881 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (871)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d 208 (871)
+.. ...++.+. +.+..+.-+. .++.+++++. .|.|||.+-..|+..+......|.++.|+|.... +|+++++|
T Consensus 137 ~~~--p~~tilg~-s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas~~sD 209 (433)
T KOG0268|consen 137 DGP--PLHTILGK-SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILASCASD 209 (433)
T ss_pred cCC--cceeeecc-cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcch-heeeeccC
Confidence 864 44444332 3466666665 6778888874 6999999999999999988899999999998775 88888899
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEEecCCccEEEEEEeeCCCeEE
Q 002881 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIV 287 (871)
Q Consensus 209 g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~ 287 (871)
+.|.+||++++.++..+. ....-..|+|+|++-.++++++|..++.||++... ++.....|.+.|.++.|+|.|+-++
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 999999999999877665 33445789999988889999999999999998654 6677788888999999999999999
Q ss_pred EEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCE
Q 002881 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (871)
Q Consensus 288 ~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 367 (871)
+|+-|.+|+|+...+.....++.+. . -..+.++.||.|.++
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYhtk-----------------------------------R----Mq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHTK-----------------------------------R----MQHVFCVKYSMDSKY 329 (433)
T ss_pred cccccceEEEeecCCCcchhhhhHh-----------------------------------h----hheeeEEEEeccccE
Confidence 9999999999633322211111100 0 012347889999999
Q ss_pred EEEEc-CCcEEEEEeecc
Q 002881 368 VVVCG-DGEYIIYTALAW 384 (871)
Q Consensus 368 lav~~-~~~~~i~~~~~~ 384 (871)
+..|+ ++.+.+|....+
T Consensus 330 i~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEecCCCcceeeeecchh
Confidence 99888 688899876654
No 111
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3.5e-24 Score=220.75 Aligned_cols=375 Identities=13% Similarity=0.183 Sum_probs=280.2
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCC---EEEEEEcCCeEEEEeCCCCc---------------------eeEE-------
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQT---------------------MAKS------- 52 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~---~la~~~~dg~v~iwd~~~~~---------------------~~~~------- 52 (871)
+|.....+.||.+.|.+++|...+. +||+++.|..|+||.+.-+. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3456678899999999999987554 78889999999999864322 1111
Q ss_pred ---eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEE-----EccCCCCeEEEEEcCCCCEEEEEECCCe
Q 002881 53 ---FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--DKVKV-----FEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (871)
Q Consensus 53 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 122 (871)
+.+|++-|.++.|+|.+..|++++.|.++.+|...+. -.+.. +.+........-|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 2379999999999999999999999999999987643 22222 2234456888999999999999999999
Q ss_pred EEEEECC--CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC----eEEEecCCCCeeEEEEeec
Q 002881 123 IKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP----NFTLDAHQKGVNCVDYFTG 196 (871)
Q Consensus 123 i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~ 196 (871)
.++|... +.+.......+|...|..++|+| .+.++++.+.|.+-++|-.-+.+. +...+-|...++|+++-+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999933 33455667789999999999999 788999999999999987652221 2223457778899999875
Q ss_pred CCcCEEEEEeCCCeEEEEECCC-------------------------------------------Cce------------
Q 002881 197 GDKPYLITGSDDHTAKVWDYQT-------------------------------------------KSC------------ 221 (871)
Q Consensus 197 ~~~~~l~~~~~dg~i~v~d~~~-------------------------------------------~~~------------ 221 (871)
.. .+++|.++..+++|+... |..
T Consensus 419 ~~--~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 419 DL--QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred Cc--eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 33 588999999999998620 000
Q ss_pred ---------------------EEEecCcccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEEEEEecCCccEE
Q 002881 222 ---------------------VQTLEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTYRLENTLNYGLERVW 275 (871)
Q Consensus 222 ---------------------~~~~~~~~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~i~ 275 (871)
+..+-+|...|.+++.+|+++++++++.. ..|++|+..+......+..|.-.|+
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT 576 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence 01234788889999999999999998754 3599999999988889999999999
Q ss_pred EEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccC
Q 002881 276 AIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLY 355 (871)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (871)
.++|||||++|++.+.|.++.+|...+.....+. +.....+...
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~------------------------------------fa~~k~HtRI 620 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR------------------------------------FACLKAHTRI 620 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhh------------------------------------hccccccceE
Confidence 9999999999999999999988743222111110 1112333334
Q ss_pred CceEEECCCCCEEEEEc-CCcEEEEEeeccc---------ccCcCceeEEEEecC----Cc-EEEEec-CCeEEEeec
Q 002881 356 PQSLKHNPNGRFVVVCG-DGEYIIYTALAWR---------NRSFGSALEFVWSSD----GE-YAVRES-SSKIKIFSK 417 (871)
Q Consensus 356 ~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~---------~~~~~~~~~~~~s~~----~~-~~~~~~-~~~i~i~~~ 417 (871)
+-...|+|++.++++++ |..+.+|.....+ .+....++.++|.|- .. .++.+- .|.|.+|..
T Consensus 621 IWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 621 IWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred EEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 45678999999999888 8899999876653 123356677777642 22 233333 799999963
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2e-24 Score=201.07 Aligned_cols=270 Identities=19% Similarity=0.206 Sum_probs=209.5
Q ss_pred ecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-CcEE-EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 002881 55 VTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKV-KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (871)
Q Consensus 55 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~ 131 (871)
..++.|.+++||| ....++.||.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 556666889999999999986 3333 334579999999999999999999999999999999998
Q ss_pred ceEEEEeecCCcceEEEEEecCCCC--EEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC
Q 002881 132 WMCTQIFEGHSHYVMQVTFNPKDTN--TFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
....+..|..+|.++.|-+ ..+ .|++|+.|.+|++||+++..++.++.- ...+.++.. ..++++++..++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv----~~pm~vVata~r 176 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV----LYPMAVVATAER 176 (347)
T ss_pred --CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc----cCceeEEEecCC
Confidence 3455677999999999987 555 899999999999999999998888764 344555543 345899999999
Q ss_pred eEEEEECCCCceEEE-e-cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eEEEEEecCC---------ccEEE
Q 002881 210 TAKVWDYQTKSCVQT-L-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RLENTLNYGL---------ERVWA 276 (871)
Q Consensus 210 ~i~v~d~~~~~~~~~-~-~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~---------~~i~~ 276 (871)
.|.+|+++++..... + ....-.+.+++..++....+.|+-+|.+.|..+..+ +.-.++.-|. -.|.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 999999986543221 1 223446889999999988899999999999988775 2222333222 24778
Q ss_pred EEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCC
Q 002881 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (871)
Q Consensus 277 i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (871)
++|+|.-..|++++.||++.+|..... .+++....+...+
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar----------------------------------------~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDAR----------------------------------------TKLKTSETHPQPI 296 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhh----------------------------------------hhhhccCcCCCcc
Confidence 999999999999999999999832211 1222334555677
Q ss_pred ceEEECCCCCEEEEEc
Q 002881 357 QSLKHNPNGRFVVVCG 372 (871)
Q Consensus 357 ~~~~~s~~g~~lav~~ 372 (871)
++..|+.+|.++|.+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 8899999998887654
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-24 Score=214.47 Aligned_cols=244 Identities=21% Similarity=0.330 Sum_probs=210.9
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE----EE-------------E-ccCCCCeEEEEEcCCC
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV----KV-------------F-EAHTDYIRCVAVHPTL 111 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~~-------------~-~~~~~~i~~i~~~~~~ 111 (871)
...+..|..+|.+++++|+.++.++++.+|+|.-|+..+++.. .. - +.|.+.+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4556678999999999999999999999999999999887643 11 1 2678889999999999
Q ss_pred CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEE
Q 002881 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (871)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i 191 (871)
++|++|+.|..|.||+.++. ...+.+.+|.+.|.+++|-. +.+.+++++.|++|++|++.....+.++-+|+..|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999998 66777899999999999998 88999999999999999999888888999999999999
Q ss_pred EEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCC
Q 002881 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL 271 (871)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 271 (871)
.....+. .+.+|+.|+++++|++. ......+.++.+.+-|++|-.+ ..+++||.||.|.+|++.+.+++.+.....
T Consensus 293 daL~reR--~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 293 DALSRER--CVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred chhcccc--eEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccc
Confidence 8876655 67788899999999995 3334556778889999999876 479999999999999999888776654211
Q ss_pred ------------ccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 272 ------------ERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 272 ------------~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
..|++++..|...++++|+.+|.+++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 2788999999999999999999999983
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=211.71 Aligned_cols=235 Identities=19% Similarity=0.321 Sum_probs=211.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF 138 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 138 (871)
.+.++...|..+.+.+|+.|..+.++|..+++.+..+++|...|+.+.++|+...+++++.|..|++|..... ......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCcccc
Confidence 5788888888889999999999999999999999999999999999999999999999999999999998876 466677
Q ss_pred ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec--CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 139 EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 139 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
..|..+|+.+..+| .+.+|++++.||+..+.|++++........ ....+++.+|+|+|. ++.+|..||.|++||+
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEeccCCCceEEEEEc
Confidence 88999999999999 899999999999999999999987766543 335689999999997 8999999999999999
Q ss_pred CCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCC-ccEEEEEEeeCCCeEEEEEcCCeE
Q 002881 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~g~~dg~i 295 (871)
.++..+..|.+|.++|..++|+.+|-++++++.|+.|++||++..+...++.... ..+.+++|.+.|++|++++.+=.|
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9999999999999999999999999999999999999999999888777776543 368999999999999999766555
Q ss_pred EE
Q 002881 296 MV 297 (871)
Q Consensus 296 ~i 297 (871)
++
T Consensus 457 y~ 458 (506)
T KOG0289|consen 457 YI 458 (506)
T ss_pred EE
Confidence 54
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=5.6e-26 Score=220.03 Aligned_cols=244 Identities=17% Similarity=0.253 Sum_probs=209.4
Q ss_pred eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002881 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iw 126 (871)
....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..+.|+.+.|.+++.++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 334566799999999999999999999999999999987665 667778888899999999999999999999999999
Q ss_pred ECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe
Q 002881 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (871)
Q Consensus 127 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~ 206 (871)
++.+. ....++.+|+..|+++.|.. +...+++|+.|.+|+.||+.+..+..+... ...++.|..+ .. .+++|.
T Consensus 247 nvd~~-r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~--~~~SgH 319 (459)
T KOG0288|consen 247 NVDSL-RLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--IS--DVISGH 319 (459)
T ss_pred eccch-hhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ce--eeeecc
Confidence 99987 77888999999999999987 555599999999999999988766555432 2334455544 22 588999
Q ss_pred CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCC----ccEEEEEEeeC
Q 002881 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL----ERVWAIGYMKS 282 (871)
Q Consensus 207 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~i~~i~~~~~ 282 (871)
.|++|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+++.....++.... ...+.+.|||+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 99999999999999999888665 89999999999999999999999999999988877776432 34778999999
Q ss_pred CCeEEEEEcCCeEEEecC
Q 002881 283 SRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~ 300 (871)
+.++++|+.||.+++|..
T Consensus 399 ~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSV 416 (459)
T ss_pred CceeeeccCCCcEEEEEc
Confidence 999999999999999943
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=6.6e-25 Score=204.36 Aligned_cols=216 Identities=22% Similarity=0.400 Sum_probs=184.9
Q ss_pred EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC------------C------cEEEEEccCCCCeEEEEEcCCCC
Q 002881 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT------------M------DKVKVFEAHTDYIRCVAVHPTLP 112 (871)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------~------~~~~~~~~~~~~i~~i~~~~~~~ 112 (871)
..+..|++++++.+|+|||.++++|+.|..|+|.|++. + -.++++..|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45677999999999999999999999999999999861 1 23677788999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCceEEEE--eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE---ecCCCC
Q 002881 113 YVLSSSDDMLIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAHQKG 187 (871)
Q Consensus 113 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~ 187 (871)
.|++|+.|++|+++|+... ..++- ......+|.++.|+| .+.++++|....++++||+++.++...- ..|.+.
T Consensus 186 ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999999999754 22211 122456799999999 8999999999999999999887654332 467889
Q ss_pred eeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC-cc-cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002881 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~-~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (871)
|+++.+++.++ +.++++.||.|++||--+++|+.++.. |. ..|.+..|..+|+++++.|.|..+++|.+.+++.+.
T Consensus 264 i~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 264 ITQVRYSSTGS--LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred eeEEEecCCcc--EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 99999999988 899999999999999999999988853 44 469999999999999999999999999999999988
Q ss_pred EEecC
Q 002881 266 TLNYG 270 (871)
Q Consensus 266 ~~~~~ 270 (871)
.+.+.
T Consensus 342 ~YtGA 346 (430)
T KOG0640|consen 342 EYTGA 346 (430)
T ss_pred EEecC
Confidence 77654
No 117
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.9e-23 Score=226.63 Aligned_cols=223 Identities=16% Similarity=0.224 Sum_probs=180.7
Q ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCce-------EEEEeecCCcceE
Q 002881 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWM-------CTQIFEGHSHYVM 146 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~ 146 (871)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|++||+.++.. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998887788889999999999999997 78999999999999999986421 2345678999999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec
Q 002881 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (871)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 226 (871)
+++|+|.+..++++++.|++|++||+++++....+. +...|.+++|+|+|. ++++++.|+.|++||+++++.+.++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 999999555567899999999999999988776665 567899999999987 78889999999999999999999999
Q ss_pred CcccCeEE-----EEEcCCCCEEEEEECCC----cEEEEeCCC-CeEEEEEecC--CccEEEEEEeeCCCeEEEEEcCCe
Q 002881 227 GHTHNVSA-----VCFHPELPIIITGSEDG----TVRIWHATT-YRLENTLNYG--LERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 227 ~~~~~v~~-----i~~~p~~~~l~~~~~dg----~v~iwd~~~-~~~~~~~~~~--~~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
+|.+.+.+ ..|++++.+|++++.|+ .|++||+++ .+.+..+..+ .+.+......+++.++++|..|+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 99876543 23458889999988774 799999985 4455444332 233333333455888999999999
Q ss_pred EEEecC
Q 002881 295 IMVKIG 300 (871)
Q Consensus 295 i~i~~~ 300 (871)
|++|..
T Consensus 287 Ir~~e~ 292 (568)
T PTZ00420 287 CRYYQH 292 (568)
T ss_pred EEEEEc
Confidence 999843
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.2e-25 Score=199.92 Aligned_cols=252 Identities=18% Similarity=0.244 Sum_probs=211.0
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC---ceeEEeeecCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIR 82 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 82 (871)
++..++|.+.|..+...--|+.|||+++|++|+|+..++. .++.++.+|.+||..++|.. -|..||+++.||.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 4556789999999999999999999999999999998764 46778999999999999976 799999999999999
Q ss_pred EEECCCCcEE--EEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC--ceEEEEeecCCcceEEEEEecCC--
Q 002881 83 VYNYNTMDKV--KVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKG--WMCTQIFEGHSHYVMQVTFNPKD-- 154 (871)
Q Consensus 83 iw~~~~~~~~--~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~-- 154 (871)
||.-.+++.. .....|...|++++|.|. |-.|++++.||.|.|.+.++. +....+...|.-.|.+++|.|..
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 9998887543 345689999999999996 568999999999999988753 55566778899999999999831
Q ss_pred C-----------CEEEEEECCCcEEEEECCCCC--CeEEEecCCCCeeEEEEeecCC--cCEEEEEeCCCeEEEEECCCC
Q 002881 155 T-----------NTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGD--KPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 155 ~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~--~~~l~~~~~dg~i~v~d~~~~ 219 (871)
+ ..|++|+.|..|+||+..+++ ...++.+|..-|..++|.|.-. ..+|++++.||++.||..+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 1 569999999999999998764 2345789999999999999742 348999999999999987632
Q ss_pred c---eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 220 S---CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 220 ~---~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
. ....++.....+..++|++.|++|++++.|+.|.+|.-+
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 123344466789999999999999999999999999743
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=211.18 Aligned_cols=278 Identities=17% Similarity=0.310 Sum_probs=228.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC--ceeEEeeecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~ 91 (871)
.++|+++.|||..+.|++++.||+++||.++.. ..++.+.....||.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 468999999999999999999999999987643 45566666788999999999999 899999999999999998765
Q ss_pred EEE--EccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002881 92 VKV--FEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (871)
Q Consensus 92 ~~~--~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (871)
.+. ..++. ..+....++|++++|++.+..|.|.+....++ .....+. ..+.|..++|+. ++..+++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEec-CCcEEEEEcCCceEE
Confidence 433 23333 35778899999999999999999999998887 4444433 456799999997 778999999999999
Q ss_pred EEECCCCCCeEEEecCCCCe--eEEEEeecCCcCEEEEEeCCCeEEEEECCC------CceEEEecCcccCeEEEEEcCC
Q 002881 169 IWNLGSPDPNFTLDAHQKGV--NCVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~------~~~~~~~~~~~~~v~~i~~~p~ 240 (871)
+||++...++..+.. .+.| ++++.++++. |+++|+..|.|.|||..+ .+++.++..-...|+++.|+|+
T Consensus 370 v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~--ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-DGSVHGTSLCISLNGS--YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEecCCcceEEEEee-cCccceeeeeecCCCc--eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999988777753 3344 4555556665 999999999999999753 5677777777889999999999
Q ss_pred CCEEEEEE--CCCcEEEEeCCCCeEEEEEec---CCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 241 LPIIITGS--EDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 241 ~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+++|+.+| .+..+++-++.+......++. ..+.++|++|+|.|.++|+|...|.+.+|
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 99998887 456799988877665554443 34679999999999999999999999998
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-23 Score=184.92 Aligned_cols=246 Identities=18% Similarity=0.304 Sum_probs=207.0
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC--c---eeEEeeecCCCEEEEEEeCC----CCEEEEEeC-C
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--T---MAKSFEVTELPVRSAKFVAR----KQWVVAGAD-D 78 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~--~---~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~-d 78 (871)
++-+.|.+.|.|.+|||+|.++|+|+.|.+|++..++.. + ....+..|++.|+.++|..+ +..|++++. |
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 345679999999999999999999999999998765432 2 22457779999999999754 456777654 7
Q ss_pred CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeec-------CCcceEEEEEe
Q 002881 79 MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFN 151 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~ 151 (871)
..|++-|..+|+..+.+.+|.+.|..+ ++-++-.+++|+.|.+|++||++-. .+..++.. ..+.|.+++..
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEEC
Confidence 889999999999999999999999876 3335778999999999999999976 44444322 13579999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC----ceEEEecC
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEG 227 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~ 227 (871)
| .+++|++|..|....+||++.+++++.+..|...|.|+.|+|... |+++++.|..|++-|++.. -++.....
T Consensus 241 p-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~--yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 241 P-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred C-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce--EEEEecccceEEEeecccchhhcCceEEEEe
Confidence 9 899999999999999999999999999999999999999999887 9999999999999998732 23445566
Q ss_pred cccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 228 ~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 88899999999999889999999999999754
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=223.07 Aligned_cols=276 Identities=19% Similarity=0.278 Sum_probs=231.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC-ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
.|.+.-+.++|.|+|.+|.+++.||.|++|+..+. +...++..+...|.+++- .+..|++|+.+++|.+|...+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 58999999999999999999999999999997665 444445446667777665 556899999999999999998887
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
-..+....-++++++++.+|++++.||+|-.|++-+.... .....+.+|..+|.++.|+| .+++|++.+.||.|++||
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEE
Confidence 6666666778999999999999999999999999999887 66778899999999999999 899999999999999999
Q ss_pred CCCCCCeEEEec-------C-CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCC
Q 002881 172 LGSPDPNFTLDA-------H-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFHPEL 241 (871)
Q Consensus 172 ~~~~~~~~~~~~-------~-~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~i~~~p~~ 241 (871)
+.++.....+.+ . ...+..++|+|++. .+++...|+.|++|+..++.....+.. +...++.+.|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g--~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG--TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCC--eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 998776555432 1 34567889999976 488888899999999998888777754 34458999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.|||+++.||.|.|||..+... ......|.+++|.|+.+.+-.-...|...++
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999987222 3334689999999999988877777776654
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=5.7e-24 Score=211.48 Aligned_cols=239 Identities=15% Similarity=0.276 Sum_probs=187.5
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----EEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 124 (871)
...+.+|...|.++++.|.|.+|++|+.|..|++||+..... .+.+ ......|.++.|+++|..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 345667788999999999999999999999999999875432 1222 23455799999999999999999999999
Q ss_pred EEECCCCceEEEE------------eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE-E-----ecCCC
Q 002881 125 LWDWEKGWMCTQI------------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-L-----DAHQK 186 (871)
Q Consensus 125 iwd~~~~~~~~~~------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~-----~~~~~ 186 (871)
|+|-... ..... ..+|...++|.+|+|...+.|++++.||++++||+...+.... + .+...
T Consensus 240 l~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9996654 33332 2478889999999998889999999999999999987653322 2 23445
Q ss_pred CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc--e-EEEecCccc--CeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 002881 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS--C-VQTLEGHTH--NVSAVCFHPELPIIITGSEDGTVRIWHATTY 261 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~-~~~~~~~~~--~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~ 261 (871)
+++.++|++++. .|++|..||.|.+|+..+.. + ...-..|.. .|++|.||++|++|++-|.|+++++||++..
T Consensus 319 ~~tsC~~nrdg~--~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 319 PVTSCAWNRDGK--LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred CceeeecCCCcc--hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 788999999988 69999999999999986432 1 233345665 8999999999999999999999999999876
Q ss_pred e-EEEEEecC--CccEEEEEEeeCCCeEEEEEc
Q 002881 262 R-LENTLNYG--LERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 262 ~-~~~~~~~~--~~~i~~i~~~~~~~~l~~g~~ 291 (871)
+ .+.+...- .-.-+.++|||+.++|++|+.
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 5 33322211 124467999999999999864
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2e-24 Score=213.75 Aligned_cols=283 Identities=16% Similarity=0.250 Sum_probs=236.0
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC---ceeEEeee--cCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEV--TELPVRSAKFVARKQWVVAGADDMFI 81 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i 81 (871)
-.++| .|.+-|.++.+|...+++.||+ .|.|+|||+... ..+..+.. .+..++++...|||+.|++|+.-.++
T Consensus 412 q~~tL-~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 412 QINTL-AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhhh-ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 33444 5999999999999999999987 678999998643 23333332 35689999999999999999999999
Q ss_pred EEEECCCCcEE--EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 82 RVYNYNTMDKV--KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 82 ~iw~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
.|||+....+. ..+....-....++.+||.+..++|..||.|.|||+.+. ...+.+.+|...+.|+..++ ++..|.
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~-dGtklW 567 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISK-DGTKLW 567 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecC-CCceee
Confidence 99999754432 222222334667899999999999999999999999987 88889999999999999999 899999
Q ss_pred EEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 002881 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p 239 (871)
+|+.|.+|+.||++.+....... ....|.++.++|.++ ++++|-.++.+.+.... +.....+..|...|.++.|.+
T Consensus 568 TGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d--WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD--WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY 643 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCcc--ceeeecccCcEEEEecC-CccceeecccccEEEEEEecc
Confidence 99999999999999887655432 457789999999988 89999999999998865 555566677999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.|+++++.+.|+-+..|.+.-|..+...... ..|.++..+.|.++|++|+.|..-.++
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqskE~-SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeecccc-CcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999999998878777666544 789999999999999999998765553
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-24 Score=195.25 Aligned_cols=246 Identities=22% Similarity=0.327 Sum_probs=201.8
Q ss_pred eecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEEC
Q 002881 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM---DKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDW 128 (871)
Q Consensus 54 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~ 128 (871)
..|+..|..+...--|++|++++.|++|+|+...+. +.+..+.+|.++|..++|.. .|.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 458888888888888999999999999999998754 45778899999999999976 6999999999999999998
Q ss_pred CCC-ceEEEEeecCCcceEEEEEecCC-CCEEEEEECCCcEEEEECCCC---CCeEEEecCCCCeeEEEEeecCCc----
Q 002881 129 EKG-WMCTQIFEGHSHYVMQVTFNPKD-TNTFASASLDRTIKIWNLGSP---DPNFTLDAHQKGVNCVDYFTGGDK---- 199 (871)
Q Consensus 129 ~~~-~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~---- 199 (871)
.++ +........|...|.+++|.|.+ +-.|++++.||.|.+.+.++. ........|.-+|++++|.|..-.
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 776 22334566799999999999944 457889999999999998765 233455789999999999997211
Q ss_pred --------CEEEEEeCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCCC----CEEEEEECCCcEEEEeCCCCe---
Q 002881 200 --------PYLITGSDDHTAKVWDYQTKS--CVQTLEGHTHNVSAVCFHPEL----PIIITGSEDGTVRIWHATTYR--- 262 (871)
Q Consensus 200 --------~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~i~~~p~~----~~l~~~~~dg~v~iwd~~~~~--- 262 (871)
.-|++|+.|..|+||+..+++ ...++.+|.+-|..++|.|.- ..|+++|.||+|.||......
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 249999999999999998753 345688999999999999965 489999999999999865221
Q ss_pred EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 263 ~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
....+......+|.++||+.|+.|++++.|..+.+|.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1223334457899999999999999999999999983
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3e-23 Score=194.21 Aligned_cols=284 Identities=15% Similarity=0.195 Sum_probs=214.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCcee--EEee--ecCCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA--KSFE--VTELPVRSAKFVARKQWVVAGAD-DMFIR 82 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 82 (871)
...|++|++.|++++|+.||++||+++.|++|+||+++..... +.++ ..-+..+.+.|+||-+-+++... ...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3568899999999999999999999999999999998764211 1111 12235688999999877766554 55899
Q ss_pred EEECCC---CcEE---------EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEE
Q 002881 83 VYNYNT---MDKV---------KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF 150 (871)
Q Consensus 83 iw~~~~---~~~~---------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 150 (871)
+|.+.. |... ..-+.|.-.|..+-...++.+|++++.|..|.+|+++ + +..+........-+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccccccceee
Confidence 997642 1111 1113466677778888889999999999999999999 4 445555555555677889
Q ss_pred ecCCCCEEEEEECCCcEEEEECC---CC-----CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC----
Q 002881 151 NPKDTNTFASASLDRTIKIWNLG---SP-----DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT---- 218 (871)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~---- 218 (871)
+| +++++++++..-.|++|.+- .+ ...+.+.+|...|...+|+++.. .+++.+.||++++||..-
T Consensus 237 SP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 237 SP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--RAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred CC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--eeEEEecCCcEEEeeccceEec
Confidence 99 89999999999999999862 22 34577899999999999999988 599999999999999752
Q ss_pred Cc---eEEEe----cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe-cCCccEEEEEEeeCCCeEEEEE
Q 002881 219 KS---CVQTL----EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 219 ~~---~~~~~----~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
++ .+... ....+....+.++|+|+.|+... ...++++..++|+...++. .|.+.|.+++|+++|+++++++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 11 12111 12233445899999999888765 4589999999888666554 5678899999999999999887
Q ss_pred cCCeEEE
Q 002881 291 DEGTIMV 297 (871)
Q Consensus 291 ~dg~i~i 297 (871)
+.-...+
T Consensus 393 dr~vrv~ 399 (420)
T KOG2096|consen 393 DRYVRVI 399 (420)
T ss_pred ceeeeee
Confidence 6544333
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=7.1e-24 Score=209.01 Aligned_cols=244 Identities=22% Similarity=0.347 Sum_probs=204.6
Q ss_pred ecCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCc----------EEEEEccCCCCeEEEEEcCCC-CEEEEEECCCe
Q 002881 55 VTELPVRSAKFVARKQW-VVAGADDMFIRVYNYNTMD----------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDML 122 (871)
Q Consensus 55 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~ 122 (871)
.|.+.|+.+.+.|+... +++++..+.|.|||..+-. +-..+.+|.+.-.+++|++.. -.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 48889999999997654 5567788999999985321 122667888878889999964 47999999999
Q ss_pred EEEEECCCCc------eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC--CCCCeEEEecCCCCeeEEEEe
Q 002881 123 IKLWDWEKGW------MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYF 194 (871)
Q Consensus 123 i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~ 194 (871)
|++||+.... .....+.+|...|..++|+|...+.|++++.|+.+.|||++ +.++.....+|.++++|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997542 23567889999999999999999999999999999999999 566677788999999999999
Q ss_pred ecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCC-----------
Q 002881 195 TGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTY----------- 261 (871)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~~~dg~v~iwd~~~~----------- 261 (871)
|.+.. +|++|+.|++|.+||+++ .+++.++.+|...|..+.|+|.. ..|++++.|+.+.+||+..-
T Consensus 282 p~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEF-ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCc-eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 98754 899999999999999997 45789999999999999999965 58889999999999998632
Q ss_pred ---eEEEEEecCCccEEEEEEeeCCCe-EEEEEcCCeEEEec
Q 002881 262 ---RLENTLNYGLERVWAIGYMKSSRR-IVIGYDEGTIMVKI 299 (871)
Q Consensus 262 ---~~~~~~~~~~~~i~~i~~~~~~~~-l~~g~~dg~i~i~~ 299 (871)
+++....+|...|..+.|+|.... |++.++|+.+.||.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 234566678889999999998776 45678999999984
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=2.4e-23 Score=192.78 Aligned_cols=283 Identities=18% Similarity=0.292 Sum_probs=226.5
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCc----------eeE-----EeeecCCCEEEEEEeC-CCCEEEE
Q 002881 12 AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQT----------MAK-----SFEVTELPVRSAKFVA-RKQWVVA 74 (871)
Q Consensus 12 ~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~-~~~~l~~ 74 (871)
..|.+.|.++...+ .|+++++|+.||.|.+||++.-. .+. --.+|+-.|..+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 36999999999998 57899999999999999987542 111 1124677899999999 5567778
Q ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEe
Q 002881 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT---LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 151 (871)
++-|.+++|||.+|.+....|+ ..+.|.+-+|+|- .-++++|..|-.|++.|+.++ ...+++.+|...|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEec
Confidence 8889999999999988887776 4567888888884 347888999999999999999 8899999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCC-CeE--------------EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSPD-PNF--------------TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~-~~~--------------~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
|...-.|++|+.||.|++||++... +.. .-..|.+.++.++|..++. ++++.+.|..+++|+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~--~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR--YLASCGTDDRIRVWNM 275 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch--hhhhccCccceEEeec
Confidence 9888889999999999999997531 111 1235778899999999888 7999999999999999
Q ss_pred CCCceEEEecC---ccc----CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEE
Q 002881 217 QTKSCVQTLEG---HTH----NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 217 ~~~~~~~~~~~---~~~----~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g 289 (871)
.+|+....-.+ |.. .+. +. +-+...++.--.++.+.++++-.|..+..+..|..++.+..+.|+-+...+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 87754221111 111 111 22 3333445555566899999999999999999998899999999999999999
Q ss_pred EcCCeEEEecC
Q 002881 290 YDEGTIMVKIG 300 (871)
Q Consensus 290 ~~dg~i~i~~~ 300 (871)
..|+.+..|..
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999854
No 128
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.6e-24 Score=213.65 Aligned_cols=288 Identities=21% Similarity=0.313 Sum_probs=229.3
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCC--EEEEEeCCC---
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDM--- 79 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg--- 79 (871)
......+.||++.|.+|..+|.|.+|++|+.||+|+||.+.+|..++++. ..+.|.|++|+|.+. .||++-...
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 34445678999999999999999999999999999999999999999887 456899999999764 344432222
Q ss_pred -----------------------------eEEEEECCCC---c-EEEEEccCCCCeEEEEEcCCCCEEEEEECC---CeE
Q 002881 80 -----------------------------FIRVYNYNTM---D-KVKVFEAHTDYIRCVAVHPTLPYVLSSSDD---MLI 123 (871)
Q Consensus 80 -----------------------------~i~iw~~~~~---~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i 123 (871)
.+..|.-... + -+...-.|...|+.+.|+..|.||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 2333432210 0 123334578899999999999999987654 578
Q ss_pred EEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEE
Q 002881 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (871)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 203 (871)
.|.++... .....|....+.|.++.|+| ...+|++++. ..|++||+.....+..+.....-|..++.+|.|++ |+
T Consensus 549 liHQLSK~-~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn--li 623 (733)
T KOG0650|consen 549 LIHQLSKR-KSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN--LI 623 (733)
T ss_pred EEEecccc-cccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe--EE
Confidence 99998876 44455666677899999999 5666776664 68999999887777777777788999999999985 99
Q ss_pred EEeCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---------eEEEEEecCCc-
Q 002881 204 TGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY---------RLENTLNYGLE- 272 (871)
Q Consensus 204 ~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~- 272 (871)
.|+.|+.+..||+.-. ++.+++.-|...+++++||+.-+++++|+.||++.|+.-.-+ -++..+.+|..
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 9999999999999854 577888889999999999999999999999999999963311 13445555543
Q ss_pred ---cEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 273 ---RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 273 ---~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.|..+.|+|...+|.+++.||+|++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 38888999999999999999999986
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.8e-24 Score=197.34 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=214.6
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
.+++.+.+|+..|..++-....+.+.+++.|.+-+||.++++.++..+.+|.+.|.+++|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45667889999999999888888899999999999999999999999999999999999999999999999999999996
Q ss_pred C------CCC---------------------------------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002881 128 W------EKG---------------------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (871)
Q Consensus 128 ~------~~~---------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (871)
. .+. ......+.+|...|.++.|-. +++.+++++.|.+..
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccce
Confidence 2 110 123334678999999999998 899999999999999
Q ss_pred EEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEE
Q 002881 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITG 247 (871)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 247 (871)
+||++++.++..+.+|....+.++-+|... ++++++.|.+.++||++.. ..+..+++|...|+++.|..+. .+++|
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcce--EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 999999999999999999999988888765 8999999999999999843 3467889999999999999875 68999
Q ss_pred ECCCcEEEEeCCCCe-EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 248 SEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 248 ~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+.|.+|++||+++.+ .+.++... .++..++.+..++.|++-.++..++++
T Consensus 375 SDDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred CCCceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEE
Confidence 999999999999876 45555544 678889999888889888888888874
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.9e-23 Score=192.81 Aligned_cols=288 Identities=17% Similarity=0.238 Sum_probs=212.9
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce-----EEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-----CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (871)
.+++|.+.|++++|+.||++|++++.|+.|++|+++.-.. +...+. -...+.+.|.|+-...++++-...+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578999999999999999999999999999999985311 111111 123578999995555566666677899
Q ss_pred EEECCCCC---CeE---------EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEE
Q 002881 169 IWNLGSPD---PNF---------TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (871)
Q Consensus 169 i~d~~~~~---~~~---------~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~ 236 (871)
+|.+...+ ... .-+.|...+..+-.. ++..+|++++.|..|.+|+++ |+.+..+......-+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 99874321 100 012234445444444 334499999999999999998 999999988777888899
Q ss_pred EcCCCCEEEEEECCCcEEEEeCC---CCe-----EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEE
Q 002881 237 FHPELPIIITGSEDGTVRIWHAT---TYR-----LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (871)
Q Consensus 237 ~~p~~~~l~~~~~dg~v~iwd~~---~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~ 308 (871)
.||+|+++++++..-.|++|..- .|. ....+.+|...|..++|+|++..+++.+.||..++|...
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd------- 308 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD------- 308 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc-------
Confidence 99999999999999999999853 222 455788899999999999999999999999999998322
Q ss_pred eCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeeccc---
Q 002881 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR--- 385 (871)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~--- 385 (871)
+-|....+..+ +..|. ..+......|-.++.+|+|+.||+.....+.+|.....+
T Consensus 309 -----VrY~~~qDpk~-----------Lk~g~------~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 309 -----VRYEAGQDPKI-----------LKEGS------APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred -----ceEecCCCchH-----------hhcCC------cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch
Confidence 21111111111 11111 111222334558999999999999999999999766543
Q ss_pred ---ccCcCceeEEEEecCCcEEEEecCCeEEEe
Q 002881 386 ---NRSFGSALEFVWSSDGEYAVRESSSKIKIF 415 (871)
Q Consensus 386 ---~~~~~~~~~~~~s~~~~~~~~~~~~~i~i~ 415 (871)
..+.+.+.+++|+++|+|+++..+..++++
T Consensus 367 ~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 367 ELEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred hHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 446678899999999999999999999987
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-22 Score=188.50 Aligned_cols=262 Identities=17% Similarity=0.280 Sum_probs=215.1
Q ss_pred EEEEEcCCeEEEEeCCCC------------ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Q 002881 30 ILASLYSGTVCIWNYQSQ------------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 30 la~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 97 (871)
+++|++...|.=+++... .+...+..|.+++++++. ++.++|+|+.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 567777766665654321 124456679999999997 688999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 98 HTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
|.+.|+++.|.+.-. .|++|++||.|.+|+... |.+...+.+|.+.|+.++.+| .+.+.++.+.|+.++.|++-.+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcC
Confidence 999999999998765 899999999999999875 588999999999999999999 8899999999999999999888
Q ss_pred CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 176 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
+.-+.+.-. ..-..+.|+|.|+ +++.+..+ .|-+|.+.+-.....+.. ...+.++.|.. +..+++|+.|+.|.+
T Consensus 160 r~a~v~~L~-~~at~v~w~~~Gd--~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNLK-NKATLVSWSPQGD--HFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGGDNEWISL 233 (362)
T ss_pred ccceeeccC-CcceeeEEcCCCC--EEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEecCCceEEE
Confidence 766555432 2334599999888 57766654 688999887665555442 24567777765 458999999999999
Q ss_pred EeCCCCeEEEEEecCCccEEEEEE--eeCCCeEEEEEcCCeEEEecCC
Q 002881 256 WHATTYRLENTLNYGLERVWAIGY--MKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 256 wd~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
||..+..+...+..|..+|-++.+ .|++.+|++++.||.|.+|...
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 999999999999999999999984 3568899999999999999543
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=207.17 Aligned_cols=253 Identities=17% Similarity=0.275 Sum_probs=214.5
Q ss_pred EEEEEEc-CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEE
Q 002881 29 WILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107 (871)
Q Consensus 29 ~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~ 107 (871)
+++++.. ...+.+|.+...........-.++|.|++-+|+|.+++.|+..|.|++|.+.+|..+..+.+|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 4555443 446889998776555544456788999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCC--------CceEEEEeecCCcceEEEEEecC-CCCEEEEEECCCcEEEEECCCCCCe
Q 002881 108 HPTLPYVLSSSDDMLIKLWDWEK--------GWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPN 178 (871)
Q Consensus 108 ~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (871)
+.||.+|++||.||.|.+|++-. .......+..|.-+|+.+...+. -...+++++.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 99999999999999999998632 23556778899999999998873 2468999999999999999998777
Q ss_pred EEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC----------------CceEEEecCccc--CeEEEEEcCC
Q 002881 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----------------KSCVQTLEGHTH--NVSAVCFHPE 240 (871)
Q Consensus 179 ~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~----------------~~~~~~~~~~~~--~v~~i~~~p~ 240 (871)
.++. .+..+.+++..|.+. .+.+|+.+|.|.+.++.. +..+..+.+|.+ +|+|++.+-|
T Consensus 212 lti~-fp~si~av~lDpae~--~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAER--VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred EEEe-cCCcceeEEEccccc--EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 6664 567889999999887 799999999999988743 224566778888 9999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC
Q 002881 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR 284 (871)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~ 284 (871)
|.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|-.+
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 99999999999999999999999988886778899888866533
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3.5e-23 Score=203.45 Aligned_cols=289 Identities=19% Similarity=0.267 Sum_probs=227.7
Q ss_pred hhhcccCCCCEEEEEEcCCCC--EEEEEEcCCeEEEEeCCCC----ceeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCe
Q 002881 8 KRKLAQRSERVKSVDLHPSEP--WILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMF 80 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~--~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 80 (871)
......+.++|++++|||..+ .+|+|...|+|-+||+.+. ..+..+..|..+|.++.|+|. ...+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 345667899999999999765 7888888999999999533 345567789999999999995 467899999999
Q ss_pred EEEEECCCCcEEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 81 IRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
|+.-|++++.....+.. ....+..+.|+.+...++++..=|.+.+||.+++......+.-|...|.+++++|....+|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999987644333332 4456778889988888888888889999999988666666777888999999999889999
Q ss_pred EEEECCCcEEEEECCCCC----CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC----CCceEEEecCccc
Q 002881 159 ASASLDRTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ----TKSCVQTLEGHTH 230 (871)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~----~~~~~~~~~~~~~ 230 (871)
++++.|++.+|||++.-. +......|...|++..|+|.+. .|++.+.|..|+|||.. ...+..++. |..
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--ceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 999999999999998633 3344567999999999999987 49999999999999973 223333333 322
Q ss_pred ----C--eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCc-cEEE-EEEeeCCCeE-EEEEcCCeEEEec
Q 002881 231 ----N--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE-RVWA-IGYMKSSRRI-VIGYDEGTIMVKI 299 (871)
Q Consensus 231 ----~--v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~-i~~~~~~~~l-~~g~~dg~i~i~~ 299 (871)
. .....|.|+..++++|-.-..|-|+|-..++.+..+..+.. .|.+ ..|+|-+..+ +.|+..|.|++|.
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 1 34568999999999999999999999888887777655433 3444 5799988844 4456677777764
No 134
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=220.88 Aligned_cols=251 Identities=20% Similarity=0.394 Sum_probs=193.9
Q ss_pred EEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---------------------------------------
Q 002881 92 VKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG--------------------------------------- 131 (871)
Q Consensus 92 ~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~--------------------------------------- 131 (871)
.+.+. +|.+.|+++.||+||+|||+||.||.|+||.+...
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 89999999999999999999999999999987550
Q ss_pred --------------------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEE
Q 002881 132 --------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (871)
Q Consensus 132 --------------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i 191 (871)
..+...+.+|...|..+.|+. +++|++++.|.+|++|++...+++..+. |..-|+|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 111223568999999999995 7899999999999999999888887775 99999999
Q ss_pred EEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC-
Q 002881 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG- 270 (871)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 270 (871)
+|+|..+. |+++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|++...+.......+
T Consensus 416 aFnPvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99998765 99999999999999998766654444 3477999999999999999999999999998877765544321
Q ss_pred -------CccEEEEEEeeCCC-eEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCee
Q 002881 271 -------LERVWAIGYMKSSR-RIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (871)
Q Consensus 271 -------~~~i~~i~~~~~~~-~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (871)
..+|+.+.+.|... .|++.+.|..|+|..+.+..+..
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~----------------------------------- 538 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH----------------------------------- 538 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh-----------------------------------
Confidence 24799999998644 58888999999886432221111
Q ss_pred eeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc
Q 002881 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR 385 (871)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~ 385 (871)
.++...... ....-+|+.||++|++++ |..|++|.....+
T Consensus 539 --KfKG~~n~~-SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 539 --KFKGFRNTS-SQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred --hhcccccCC-cceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 111111111 112567888999998888 6788888765443
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2e-22 Score=188.88 Aligned_cols=269 Identities=17% Similarity=0.200 Sum_probs=209.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (871)
....|..+.|+|.++.|++++.||.+++|+.........+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++ ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCC--cc
Confidence 4678999999999999999999999999999877554444 48899999999974 57999999999999999987 34
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEE
Q 002881 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (871)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d 215 (871)
..+..|..+|.|+.+++ ..+.+++|+.|++|++||.+.......+.. ...|.++... ++ .|++|+.+..+.+||
T Consensus 88 ~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~--~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GN--RLVVGTSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CC--EEEEeecCceEEEEE
Confidence 55677999999999998 788999999999999999998666555543 3478877764 34 699999999999999
Q ss_pred CCCCceEEEe--cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eEEEEEecCC---------ccEEEEEEe
Q 002881 216 YQTKSCVQTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL---------ERVWAIGYM 280 (871)
Q Consensus 216 ~~~~~~~~~~--~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~---------~~i~~i~~~ 280 (871)
+++....... ....-.+.++++.|++.-++++|-||.|.+=.+... +.-..++-|. -+|.+++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 9986654322 224456899999998888999999999887655543 2222333221 268999999
Q ss_pred eCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEE
Q 002881 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (871)
Q Consensus 281 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (871)
|-.+.+++|+.||.|.+|.....+ +++++...+..+..++
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rK----------------------------------------rl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRK----------------------------------------RLKQLAKYETSISSLS 281 (323)
T ss_pred cccceEEecCCCceEEEccCcchh----------------------------------------hhhhccCCCCceEEEE
Confidence 999999999999999998433211 1112222233456899
Q ss_pred ECCCCCEEEEEcCC
Q 002881 361 HNPNGRFVVVCGDG 374 (871)
Q Consensus 361 ~s~~g~~lav~~~~ 374 (871)
|+.+|..||++++-
T Consensus 282 fs~dG~~LAia~sy 295 (323)
T KOG1036|consen 282 FSMDGSLLAIASSY 295 (323)
T ss_pred eccCCCeEEEEech
Confidence 99999999998753
No 136
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=9.6e-23 Score=210.39 Aligned_cols=282 Identities=22% Similarity=0.314 Sum_probs=232.4
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEccCCCCeEE-EEEcC-CCCEEEEEECCCeE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV--KVFEAHTDYIRC-VAVHP-TLPYVLSSSDDMLI 123 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~-i~~~~-~~~~l~~~~~dg~i 123 (871)
++.+.+.+|+..|+.++..+. .+++++|.||++++|+-..++.+ ..+.+|.+.|.+ +++-+ ++-.|++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 566788899999998887654 48999999999999997655543 446678887777 88875 44569999999999
Q ss_pred EEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEE
Q 002881 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (871)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 203 (871)
.+|...+. ....++.+|...|.+++... ++ .+++||.|.++++|-.. +....+.+|...|+.+...|.. .++
T Consensus 84 ~v~~~~~~-~P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~---~~v 155 (745)
T KOG0301|consen 84 IVFKLSQA-EPLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN---TYV 155 (745)
T ss_pred EEEecCCC-CchhhhhccccceeeeecCC-cC-ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC---cEE
Confidence 99999887 77888999999999998765 34 49999999999999764 4556689999999999998877 499
Q ss_pred EEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCC
Q 002881 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (871)
Q Consensus 204 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 283 (871)
+|+.|..|++|.- ++.++++.+|.+.|.++++-|++ .+++++.||.|+.|++ +|..+....+|..-+++++..+++
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence 9999999999984 78899999999999999999985 5889999999999997 788999999999999999988999
Q ss_pred CeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECC
Q 002881 284 RRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (871)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 363 (871)
..++++++|+++++|...+ -.+.+.+. ...+.++..-+
T Consensus 232 ~~Ivs~gEDrtlriW~~~e------------------~~q~I~lP------------------------ttsiWsa~~L~ 269 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKDE------------------CVQVITLP------------------------TTSIWSAKVLL 269 (745)
T ss_pred CeEEEecCCceEEEeecCc------------------eEEEEecC------------------------ccceEEEEEee
Confidence 9999999999999994330 11111110 11223567778
Q ss_pred CCCEEEEEcCCcEEEEEeecc
Q 002881 364 NGRFVVVCGDGEYIIYTALAW 384 (871)
Q Consensus 364 ~g~~lav~~~~~~~i~~~~~~ 384 (871)
+|..++.|+||.++||+...-
T Consensus 270 NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 270 NGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCCEEEeccCceEEEEEeccc
Confidence 999999999999999987643
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=189.45 Aligned_cols=277 Identities=10% Similarity=0.173 Sum_probs=215.2
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 97 (871)
-.|+.|++-|.+||+|+.||.|.|||+.|...-+.+..|-.||++++||++|..|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999888887
Q ss_pred CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecC-----CcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 98 HTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
...+|+...|+|.....+++ --+..-.+-++... ....+... +..-.+..|.+ .++++++|...|.+.++|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYD 181 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEe
Confidence 46789999999965433332 22323334444332 11111111 11122335777 799999999999999999
Q ss_pred CCCCCCeEEEecCC-CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-------Cce--EEEecC--cccCeEEEEEcC
Q 002881 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KSC--VQTLEG--HTHNVSAVCFHP 239 (871)
Q Consensus 172 ~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-------~~~--~~~~~~--~~~~v~~i~~~p 239 (871)
..+.+++..++-.. ..|..+.++..|+ ++++.+.|+.|+.|+++. +.+ .+.++. ....=.+++|+.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCc--EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 99988887776555 7788899988887 799999999999999862 111 111111 112335789999
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCCeEEEEEecCC-ccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 240 ELPIIITGSE-DGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 240 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
+|.+++.++. -..++||....|.+++.+.+.. .....+.|+|-...+++- ..|.+++|...
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 9999988773 3469999999999999998877 567889999988877766 88999998543
No 138
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=3.1e-22 Score=203.51 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=109.7
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCceeE------EeeecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002881 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAK------SFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 82 (871)
.+.+|++.|+.+.|+| +..+||+++.|..|+||.+..|...+ .+.+.+..|.|+.|+|...-|...+..|.+.
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 4678999999999999 45578999999999999987542211 2223355799999999887788888899999
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (871)
|||+.+++.+..+.+|.+.|.++.|+.||..|++++.|..|+|||.+......+...+|
T Consensus 154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 99999999999999999999999999999999999999999999998654444444444
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.9e-24 Score=223.58 Aligned_cols=259 Identities=20% Similarity=0.407 Sum_probs=232.3
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~ 106 (871)
..+++.+...-.+++|+.+. +-.|...|.++..-..+..+++|+.|..+-+|.+.....+..+.+|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 33444454556677888543 345788888888877889999999999999999987777888999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCC
Q 002881 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186 (871)
Q Consensus 107 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 186 (871)
|++....|+.|+.+|+|++||++.. ...+.+.+|...+.++.|+| -+.+++.|+.|+.+++||.+...+...+.+|..
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcc
Confidence 9999999999999999999999988 66778899999999999999 888999999999999999998889999999999
Q ss_pred CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 002881 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (871)
.+.++.++|+|. +++.|++|..+++||...|+.+..+..|...+.++.|+|..-++++||.|++|++||+++.+.+..
T Consensus 156 vv~~l~lsP~Gr--~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 156 VVDVLRLSPDGR--WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eeEEEeecCCCc--eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 999999999998 899999999999999999999999999999999999999998999999999999999999999888
Q ss_pred EecCCccEEEEEEeeCCCeEEEEEcCCeE
Q 002881 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 267 ~~~~~~~i~~i~~~~~~~~l~~g~~dg~i 295 (871)
.......|.+..|+|++..+.+|......
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchhhhh
Confidence 88878899999999999998888766544
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=197.66 Aligned_cols=259 Identities=17% Similarity=0.286 Sum_probs=215.0
Q ss_pred CCeEEEEeCCCCceeEEeeec-CCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCE
Q 002881 36 SGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
..++.+||+++|....++++. ...-.++..- .+.+++++.. ...|.+|.+..........--.+++.+++-+|.|.+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 456999999999988888765 2222222221 2355665543 568999998765544433345678999999999999
Q ss_pred EEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC---------CCCCeEEEecC
Q 002881 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------SPDPNFTLDAH 184 (871)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~ 184 (871)
|+.|+..|.|++|.+.+| .+..++..|-..|+|+.|+- ++.+|++|+.||.|.+|++- +..+...+..|
T Consensus 96 l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 999989999999999999 77777789999999999998 89999999999999999873 34577888999
Q ss_pred CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---
Q 002881 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--- 261 (871)
Q Consensus 185 ~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~--- 261 (871)
.-+|+.+...+.+....+++++.|.++++||+..+..+.++. ....+.+++.+|.+..+.+|+++|.|.+.++...
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 999999999998877899999999999999999998888876 5678999999999999999999999998876432
Q ss_pred -------------eEEEEEecCCc--cEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 262 -------------RLENTLNYGLE--RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 262 -------------~~~~~~~~~~~--~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.....+.+|.+ .|+|++++-||..|++|+.||.+.+|
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 23455667766 89999999999999999999999998
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-23 Score=218.31 Aligned_cols=244 Identities=19% Similarity=0.317 Sum_probs=204.1
Q ss_pred CEEEEEEcC-CCCEEEEEEcCCeEEEEeCCC---CceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE
Q 002881 17 RVKSVDLHP-SEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 17 ~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
.+..+.|+. +.++|||++.+|.|.+||+.. .+.+..|..|+..++++.|++.. .+|++|+.||.|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 355677876 567999999999999999987 55666788899999999999854 6788999999999999999888
Q ss_pred EEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
..++.+....|+.+.|+|. +..++++.+.|.+.+||++....+...+..|.++|.|+.|+| +..+||+|+.|++|+||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIW 247 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEE
Confidence 8888888999999999995 678889999999999999988788888899999999999999 89999999999999999
Q ss_pred ECCCCCCeEEEe-cCCCCeeEEEEeecCCcCEEEEEe--CCCeEEEEECCCC-ceEEEecCcccCeEEEEEcC-CCCEEE
Q 002881 171 NLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP-ELPIII 245 (871)
Q Consensus 171 d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~~~~--~dg~i~v~d~~~~-~~~~~~~~~~~~v~~i~~~p-~~~~l~ 245 (871)
|+.+++...... ....++.++.|-|.... .|++++ .|-.|+|||++.. -+..++..|...++.++|.. +...+.
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~-hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSY-HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccc-hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence 998765443332 23578999999998763 566654 4778999999854 35677888999999999976 445788
Q ss_pred EEECCCcEEEEeCCCCe
Q 002881 246 TGSEDGTVRIWHATTYR 262 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~ 262 (871)
+++.||+|..-.+++..
T Consensus 327 s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eecCccHHHHhhhhccc
Confidence 99999998766555443
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.6e-23 Score=214.08 Aligned_cols=278 Identities=21% Similarity=0.352 Sum_probs=219.1
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCce----eEEeee---cCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM----AKSFEV---TELPVRSAKFVA-RKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~----~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~ 87 (871)
....+|..+++-..+++++ ...+.||.+..... ...+.. -...+..+.|.. +.++||+++..|.|.+||++
T Consensus 40 ~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 4567788889888888887 45677887654321 111111 112456678874 56889999999999999998
Q ss_pred C---CcEEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 88 T---MDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 88 ~---~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
. .+.+..|..|...+.++.|++.. .+|++||.||.|++||++.. ....++.+....|..+.|+|..++.|+++..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEecC
Confidence 6 45556788999999999999965 47889999999999999987 5566667777889999999988999999999
Q ss_pred CCcEEEEECCCCC-CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce--EEEecCcccCeEEEEEcCC
Q 002881 164 DRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 164 dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~i~~~p~ 240 (871)
.|.+..||++... +...+.+|.++|.|+.|+|++. +|++|+.|+.|+|||..+++. +.++. ...+|..+.|-|.
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~--~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE--WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPA 274 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCc--eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccC
Confidence 9999999998764 5677889999999999999665 999999999999999986543 44443 4568999999998
Q ss_pred CC-EEEEEE--CCCcEEEEeCCC-CeEEEEEecCCccEEEEEEee-CCCeEEEEEcCCeEEEe
Q 002881 241 LP-IIITGS--EDGTVRIWHATT-YRLENTLNYGLERVWAIGYMK-SSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 241 ~~-~l~~~~--~dg~v~iwd~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~g~~dg~i~i~ 298 (871)
.+ .|++++ .|-.|+|||++. +-+..++..|...++.++|.. |...+.+++.||++...
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 76 455554 467899999874 346678888888899999966 34567778888887653
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.7e-20 Score=195.82 Aligned_cols=266 Identities=14% Similarity=0.143 Sum_probs=202.0
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEE
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWV-VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~ 106 (871)
..+++++.||.|.+||..+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 467888889999999999999888887654 46789999999977 5667789999999999888777765544 56789
Q ss_pred EcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC-cEEEEECCCCCCeEEEecC
Q 002881 107 VHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAH 184 (871)
Q Consensus 107 ~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 184 (871)
|+|+++.++++ +.++.|.+||+++. .....+. +...+.+++|+| ++..+++++.++ .+.+||..+++...... .
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~ 155 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR-KVLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-V 155 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-c
Confidence 99999977655 56899999999986 3344433 223468899999 788888888765 46778988776554433 2
Q ss_pred CCCeeEEEEeecCCcCEEE-EEeCCCeEEEEECCCCceEEEecCcc-------cCeEEEEEcCCCCEEEE-EECCCcEEE
Q 002881 185 QKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQTKSCVQTLEGHT-------HNVSAVCFHPELPIIIT-GSEDGTVRI 255 (871)
Q Consensus 185 ~~~i~~i~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~-------~~v~~i~~~p~~~~l~~-~~~dg~v~i 255 (871)
...+.++.|+|++. +++ ++..++.|.+||+.+++.+..+..+. .....++|+|+++++++ .+.++.+.+
T Consensus 156 ~~~~~~~~~s~dg~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 156 DQRPRFAEFTADGK--ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCCccEEEECCCCC--EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 33457789999887 454 44568999999999888766554221 12356889999997554 455678999
Q ss_pred EeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEE-EcCCeEEEecCCC
Q 002881 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMVKIGRE 302 (871)
Q Consensus 256 wd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g-~~dg~i~i~~~~~ 302 (871)
||..+++....+.. ...+++++|+|+|+.|+++ ..+|.+.+|....
T Consensus 234 ~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 234 VDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 99998887765543 3578999999999999886 4689999985443
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.7e-24 Score=218.76 Aligned_cols=238 Identities=24% Similarity=0.420 Sum_probs=220.4
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
+.+..|+..|.++..-..++.+++|+.+..+-+|.+..-..+..+.+|+++|.++.|++....|+.|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 56667899999999877888999999999999999887777778999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (871)
++.++++.+|...+..+.|+|-+.+.+.|+.|+.+++||.+.. .+...+.+|...+.++.|+| ++.+++.++.|.+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecC-CCceeeccCCcceee
Confidence 9999999999999999999999999999999999999999965 57888889999999999999 899999999999999
Q ss_pred EEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE
Q 002881 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
+||+..++....+..|.+.+..+.++|..- ++..|+.|+++++||+++.+.+.........|.+..|+|++..+++|.
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~--Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEV--LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eecccccccccccccccccccccccCchhh--hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 999999999999999999999999988765 789999999999999999888888888888999999999999888887
Q ss_pred CC
Q 002881 249 ED 250 (871)
Q Consensus 249 ~d 250 (871)
..
T Consensus 258 q~ 259 (825)
T KOG0267|consen 258 QI 259 (825)
T ss_pred hh
Confidence 55
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=191.45 Aligned_cols=285 Identities=14% Similarity=0.201 Sum_probs=215.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCce
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWM 133 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 133 (871)
.++|+++.|+|..+.+++++.|++++||.++. ...++.+.-...+|.+..|.|+|. .+++++....++.||+.+. +
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-k 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-K 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-c
Confidence 56899999999999999999999999998763 345666666678999999999998 8999999999999999876 3
Q ss_pred EEEE--eecC-CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCe
Q 002881 134 CTQI--FEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (871)
Q Consensus 134 ~~~~--~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~ 210 (871)
..+. ..++ ...+.....+| ++++++..+..|.|.+....+++.+..++ ..+.|..+.|+.++. .|++++.+|.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk--~l~~~~~~Ge 367 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK--ELLASGGTGE 367 (514)
T ss_pred cccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc--EEEEEcCCce
Confidence 2222 2233 23466778888 88899999999999999998888877765 567889999998886 6888888999
Q ss_pred EEEEECCCCceEEEecCccc-CeEEEEEcCCCCEEEEEECCCcEEEEeCCC------CeEEEEEecCCccEEEEEEeeCC
Q 002881 211 AKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVRIWHATT------YRLENTLNYGLERVWAIGYMKSS 283 (871)
Q Consensus 211 i~v~d~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~i~~i~~~~~~ 283 (871)
|++||++...++..+....+ .-+++|.++++.+||+||..|.|.|||.++ .+++..+..-...|.++.|+|++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 99999999988888763221 236788889999999999999999999643 34555555555789999999999
Q ss_pred CeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECC
Q 002881 284 RRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (871)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 363 (871)
+.||+++....=.+. .+++.+...--+.+. ....-..+++++|||
T Consensus 448 qiLAiaS~~~knalr-------------------------LVHvPS~TVFsNfP~----------~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 448 QILAIASRVKKNALR-------------------------LVHVPSCTVFSNFPT----------SNTKVGHVTCMAFSP 492 (514)
T ss_pred hhhhhhhhccccceE-------------------------EEeccceeeeccCCC----------CCCcccceEEEEecC
Confidence 999988754322221 111111100000000 012223667899999
Q ss_pred CCCEEEEEc-CCcEEEEEe
Q 002881 364 NGRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 364 ~g~~lav~~-~~~~~i~~~ 381 (871)
+|.++|+++ .|++.+|.+
T Consensus 493 ~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCceEEeecCCCceeeEee
Confidence 999999998 688888864
No 146
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.89 E-value=2.2e-19 Score=179.74 Aligned_cols=226 Identities=15% Similarity=0.182 Sum_probs=166.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEE-EEEcC-------CCCEEEEEECCCeEEEEE
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC-VAVHP-------TLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-i~~~~-------~~~~l~~~~~dg~i~iwd 127 (871)
|...|.|+.|+.+...+.+++ |..+.+|+--+...........+.+.. +..-+ ....++.++.||.+.|.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 445567899988877666555 455555543333333333222222221 11111 234788999999999987
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC
Q 002881 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
-. + ........|.+.+.+-.|+| ++.-|++++.||.|++|+- ++-...++.....+|.|++|.|+.++ .+.+.
T Consensus 92 k~-~-rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~-vl~c~-- 164 (737)
T KOG1524|consen 92 KS-A-RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNS-IVFCQ-- 164 (737)
T ss_pred cc-c-hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCc-eEEec--
Confidence 44 3 45667788999999999999 8899999999999999995 44434444456788999999999875 44433
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEE
Q 002881 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 287 (871)
.+.+.+=.+.....+...+.|.+-|.++.|+|..+++++||+|-..++||. -|+.+..-..|.-+|++++|.|+ ..++
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-ccee
Confidence 356777777777777788999999999999999999999999999999994 47778777888889999999999 6666
Q ss_pred EEEc
Q 002881 288 IGYD 291 (871)
Q Consensus 288 ~g~~ 291 (871)
+|+-
T Consensus 243 v~S~ 246 (737)
T KOG1524|consen 243 LWSY 246 (737)
T ss_pred eeee
Confidence 6653
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.4e-22 Score=194.65 Aligned_cols=244 Identities=18% Similarity=0.294 Sum_probs=193.9
Q ss_pred EEEEEEcC-------CCCEEEEEEcCCeEEEEeCCCCce---------------------eEEeeecCCCEEEEEEeCC-
Q 002881 18 VKSVDLHP-------SEPWILASLYSGTVCIWNYQSQTM---------------------AKSFEVTELPVRSAKFVAR- 68 (871)
Q Consensus 18 v~~i~~s~-------~~~~la~~~~dg~v~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~- 68 (871)
..|++|.. .|+++|+|+-+..|.|||+.-... -..-++|...|.++.|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 45667753 367999999999999999853110 0112357888889999875
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEE
Q 002881 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (871)
Q Consensus 69 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 147 (871)
.+.||+||.|.+|++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|+++.+.|.+......... ...+.|-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEE
Confidence 467899999999999999999999999999999999999996 5688999999999999999532222222 23467999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce--EEE
Q 002881 148 VTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQT 224 (871)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~ 224 (871)
++|+|...+.+++++.||+++-+|+|+. ++++++..|..+|.++++++...+ ++++++.++.|++|++....+ +..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~-~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG-LLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc-ceeeccccceEEEEeecCCCCccccc
Confidence 9999989999999999999999999986 899999999999999999887654 899999999999999875433 222
Q ss_pred ecCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeE
Q 002881 225 LEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRL 263 (871)
Q Consensus 225 ~~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~~~~ 263 (871)
-...-+...|.++.|+-. .++.|+..+.+++||+.+...
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 111233466777888765 667788888899999887654
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.6e-21 Score=202.10 Aligned_cols=241 Identities=17% Similarity=0.250 Sum_probs=207.4
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce
Q 002881 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133 (871)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 133 (871)
.|...-+.++|.|+|.+|++++.||.|++|+..+. +...++..+...|.+++... .+|++|+.+++|.+|.+.++ .
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~-~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSG-E 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCC-C
Confidence 47778899999999999999999999999998766 44555555778888887764 48999999999999999987 4
Q ss_pred EEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEE
Q 002881 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (871)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v 213 (871)
...++....-++.+++++- ++++++.|+.|-.|++-++........+.+|..+|.++.|+|.++ +|++.+.||.|++
T Consensus 88 ~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~i 164 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQI 164 (933)
T ss_pred ccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC--EEEEEecCceEEE
Confidence 4455666678899999998 899999999999999999999999999999999999999999887 8999999999999
Q ss_pred EECCCCceEEEecCc--------ccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC--CccEEEEEEeeCC
Q 002881 214 WDYQTKSCVQTLEGH--------THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMKSS 283 (871)
Q Consensus 214 ~d~~~~~~~~~~~~~--------~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~i~~~~~~ 283 (871)
||++++.+..++.+- ...+..++|+|+|..+++.+.|+.|++|+..++.....+... ...+..++|+|.|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 999998877666431 234677899999888888888999999999999887777643 3448999999999
Q ss_pred CeEEEEEcCCeEEEecCC
Q 002881 284 RRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~ 301 (871)
++||+++-+|.|.+|...
T Consensus 245 ~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVD 262 (933)
T ss_pred cEEeeeccCCcEEEEecc
Confidence 999999999999999543
No 149
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=4.4e-20 Score=194.14 Aligned_cols=264 Identities=12% Similarity=0.144 Sum_probs=197.7
Q ss_pred hhcccCCCCEEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEC
Q 002881 9 RKLAQRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNY 86 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~ 86 (871)
..+.++ ..+.+++|+|+++.++ +++.++.|++||..+++....+..+.. +..+.|+|+++.++++ +.++.|.+||+
T Consensus 25 ~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 25 RTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred EEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 344444 3477899999999774 566789999999999888777765443 5678999999988665 45899999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE-EEECC
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLD 164 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~d 164 (871)
.+++.+..+..+ ..+.+++|+|++.++++++.++ .+.+||.+++........ ...+.++.|+| ++..++ ++..+
T Consensus 103 ~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~-dg~~l~~~~~~~ 178 (300)
T TIGR03866 103 ETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV--DQRPRFAEFTA-DGKELWVSSEIG 178 (300)
T ss_pred CCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc--CCCccEEEECC-CCCEEEEEcCCC
Confidence 988877776532 3468899999999999988775 567789887633332222 23457889999 666664 45569
Q ss_pred CcEEEEECCCCCCeEEEecCC-------CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQ-------KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~ 237 (871)
+.|.+||+.+++....+..+. .....+.|+|+++. .+++.+.++.+.+||..+++....+. +...+.+++|
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 256 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT-AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF 256 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE-EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence 999999999887665553221 12346788888873 23444567789999999888766553 4457899999
Q ss_pred cCCCCEEEEE-ECCCcEEEEeCCCCeEEEEEecCCccEEEEEEee
Q 002881 238 HPELPIIITG-SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (871)
Q Consensus 238 ~p~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 281 (871)
+|++++|+++ +.+|.|++||+.+++.+..+..+ ...+.++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9999998876 46899999999999998888876 5568888765
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-20 Score=176.05 Aligned_cols=253 Identities=15% Similarity=0.239 Sum_probs=197.5
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC----ceeEEeeecCCCEEEEEEeC--CCCEEEEEeCCC
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDM 79 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg 79 (871)
.+...-.+|.+-|.++.|.+.|+.+|+++.|++|+|||..+. ......+.|.+.|..+.|.+ =|+.+|+++.|+
T Consensus 4 s~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 4 SMAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 344455789999999999999999999999999999996543 34556778999999999976 489999999999
Q ss_pred eEEEEECCC---------CcEEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC-----ceEEEEe-----
Q 002881 80 FIRVYNYNT---------MDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKG-----WMCTQIF----- 138 (871)
Q Consensus 80 ~i~iw~~~~---------~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~----- 138 (871)
++.||.-.. .....++......|+.+.|.|. |-.|++++.||.++||+.-.. +.+...+
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 999997521 1223455566788999999995 668999999999999987543 2222222
Q ss_pred --ecCCcceEEEEEecC--CCCEEEEEECC-----CcEEEEECCCCC----CeEEEecCCCCeeEEEEeecCCc--CEEE
Q 002881 139 --EGHSHYVMQVTFNPK--DTNTFASASLD-----RTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDK--PYLI 203 (871)
Q Consensus 139 --~~~~~~v~~~~~~p~--~~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~--~~l~ 203 (871)
..+..+..|+.|+|. ...+|++|+.+ +.+.||....+. .+..+..|..+|+.++|.|+-.. .+|+
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 245667889999983 24578888766 478888765443 34456789999999999997533 2688
Q ss_pred EEeCCCeEEEEECCCC--------------------ceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 204 TGSDDHTAKVWDYQTK--------------------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 204 ~~~~dg~i~v~d~~~~--------------------~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
+++.|| |+||.+... +.+..+..|.+.|+.+.|+-.|..|.+.|.||.||+|...
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999999 999998731 1244567899999999999999999999999999999743
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.7e-20 Score=174.09 Aligned_cols=246 Identities=18% Similarity=0.321 Sum_probs=195.0
Q ss_pred eecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEE
Q 002881 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 54 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd 127 (871)
.+|..-|+++.|.+-|+++|+|+.|++|+|||.++. .+....+.|.+.|..+.|-+- |+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 357888999999999999999999999999996432 445567799999999999763 88999999999999997
Q ss_pred CC-----C---CceEEEEeecCCcceEEEEEecC-CCCEEEEEECCCcEEEEECCCCCCeE------EE-------ecCC
Q 002881 128 WE-----K---GWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPNF------TL-------DAHQ 185 (871)
Q Consensus 128 ~~-----~---~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~------~~-------~~~~ 185 (871)
-. . .+....++....+.|+.+.|.|. -+-.+++++.||.++||+....-... .+ ..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 1 23445566777888999999994 35679999999999999975432211 11 1355
Q ss_pred CCeeEEEEeecCC-cCEEEEEeCC-----CeEEEEECCCCc----eEEEecCcccCeEEEEEcCCC----CEEEEEECCC
Q 002881 186 KGVNCVDYFTGGD-KPYLITGSDD-----HTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPEL----PIIITGSEDG 251 (871)
Q Consensus 186 ~~i~~i~~~~~~~-~~~l~~~~~d-----g~i~v~d~~~~~----~~~~~~~~~~~v~~i~~~p~~----~~l~~~~~dg 251 (871)
.+..|+.|+|..- .++|++|+.+ +.+.||....+. .+.++.+|..+|+.++|.|+- .+|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 6778999997642 3477888766 478899776433 356677899999999999964 4899999999
Q ss_pred cEEEEeCCCC--------------------eEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 252 TVRIWHATTY--------------------RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 252 ~v~iwd~~~~--------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
|+||++..- +.+..+..|.+.||.+.|.-.|..|++.++||.+++|..
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999997631 134557788899999999999999999999999999943
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.7e-21 Score=189.80 Aligned_cols=277 Identities=18% Similarity=0.270 Sum_probs=207.8
Q ss_pred EEEEcCCCCEEEEEEcC---CeEEEEeCCCCceeEEeeec----CCCEEEEEEeC-------CCCEEEEEeCCCeEEEEE
Q 002881 20 SVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVT----ELPVRSAKFVA-------RKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~ 85 (871)
.+..-|+...++++-.. ..+.+|=++..... .+-.| .....|++|.. .|+++|+|+-|..|.|||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 45566777777777542 23334433333211 12112 23456788854 368999999999999999
Q ss_pred CCCCcE---------------------EEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCCc
Q 002881 86 YNTMDK---------------------VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH 143 (871)
Q Consensus 86 ~~~~~~---------------------~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 143 (871)
+.-... -....+|++.|..+.|+.. .+.|++||.|.+|++||+.++ .+..++..|..
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~~k 287 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHHGK 287 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-CcceehhhcCC
Confidence 852110 0112368888999999876 457899999999999999999 78888889999
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-ceE
Q 002881 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCV 222 (871)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~ 222 (871)
.|.++.|+|..+.++++|+.|+++.+.|.+........-...+.|-.+.|.|.... .++++..||+|+-+|++.. +++
T Consensus 288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCCce
Confidence 99999999999999999999999999999853322222224577889999998765 7888999999999999974 899
Q ss_pred EEecCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCe--EEEEEecCCccEEEEEEeeCC-CeEEEEEcCCeEEEe
Q 002881 223 QTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMVK 298 (871)
Q Consensus 223 ~~~~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~i~~~~~~-~~l~~g~~dg~i~i~ 298 (871)
.+++.|.++|+++++++.-+ +++++|.|+.|++|++..-. .+..-....++..|.++.|+- -.+++|+..+.+++|
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence 99999999999999998664 78899999999999976433 333333344567788888874 456778888888887
Q ss_pred c
Q 002881 299 I 299 (871)
Q Consensus 299 ~ 299 (871)
.
T Consensus 447 d 447 (463)
T KOG0270|consen 447 D 447 (463)
T ss_pred e
Confidence 3
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.8e-21 Score=185.41 Aligned_cols=245 Identities=20% Similarity=0.287 Sum_probs=190.9
Q ss_pred hhcccCCCCEEEEEEcCCC--CEEEEEEcCCeEEEEeCCC----------------CceeEEeeecCCCEEEEEEeCCC-
Q 002881 9 RKLAQRSERVKSVDLHPSE--PWILASLYSGTVCIWNYQS----------------QTMAKSFEVTELPVRSAKFVARK- 69 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~--~~la~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~- 69 (871)
...-+|.+.+..+.-++-+ .+.|+-+..|.|.||++.. .+++.++.+|...=..++|||-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3445678888888877755 4555556689999999742 35667788899889999999933
Q ss_pred CEEEEEeCCCeEEEEECCCCcEE---EEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC-ceEEEEeecCCcc
Q 002881 70 QWVVAGADDMFIRVYNYNTMDKV---KVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHY 144 (871)
Q Consensus 70 ~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~ 144 (871)
..|++|..-+.|++|...++... ..+.+|+..|..++|||. ...|++||.||+|+|||++.+ .........|.+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 34888888899999999887653 345679999999999996 458899999999999999987 2233344789999
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEECCC---CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc-
Q 002881 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS- 220 (871)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~- 220 (871)
|..+.|+. ...+|++|+.||+++|||++. ++++..++.|..+|+++.|+|.... .+++++.|.+|.+||+....
T Consensus 305 VNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 305 VNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-VIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-eEEeccCCCcEEEEEeeccCC
Confidence 99999998 555999999999999999975 4678899999999999999998765 89999999999999985211
Q ss_pred ---------------eEEEecCc--ccCeEEEEEcCCCC-EEEEEECCCcEEEE
Q 002881 221 ---------------CVQTLEGH--THNVSAVCFHPELP-IIITGSEDGTVRIW 256 (871)
Q Consensus 221 ---------------~~~~~~~~--~~~v~~i~~~p~~~-~l~~~~~dg~v~iw 256 (871)
+.+.+-.| ...+..+.|+++-+ ++++.+.||. .||
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 11122223 33578899999765 7777777763 444
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.8e-21 Score=177.96 Aligned_cols=233 Identities=17% Similarity=0.299 Sum_probs=180.3
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee
Q 002881 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (871)
Q Consensus 60 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (871)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++||++|+.|+++|.|..|.+||+..+....++ .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-E
Confidence 789999999999999999999999999999988999999999999999999999999999999999999998544333 2
Q ss_pred cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe--cCCCC----eeEEEEeecCCcCEEEEEeCCCeEEE
Q 002881 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AHQKG----VNCVDYFTGGDKPYLITGSDDHTAKV 213 (871)
Q Consensus 140 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~----i~~i~~~~~~~~~~l~~~~~dg~i~v 213 (871)
..++|+.+.|+|.+.+.+++.-.+..-.+-++..+. ...- ...+. -.+..|.+.|+ ++++|...|.+.+
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~--yIitGtsKGkllv 179 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGK--YIITGTSKGKLLV 179 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCC--EEEEecCcceEEE
Confidence 567899999999878887777766666666665422 2221 11111 12234555565 9999999999999
Q ss_pred EECCCCceEEEecCcc-cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-------EE--EEEec--CCccEEEEEEee
Q 002881 214 WDYQTKSCVQTLEGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-------LE--NTLNY--GLERVWAIGYMK 281 (871)
Q Consensus 214 ~d~~~~~~~~~~~~~~-~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~-------~~--~~~~~--~~~~i~~i~~~~ 281 (871)
+|..+.+++..++... ..|..+.++..|.+|+..+.|..||.|+++.-. .. +.++. ....=.+++|+.
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 9999999988887666 789999999999999999999999999876211 11 11110 111234688999
Q ss_pred CCCeEEEEEcC-CeEEEe
Q 002881 282 SSRRIVIGYDE-GTIMVK 298 (871)
Q Consensus 282 ~~~~l~~g~~d-g~i~i~ 298 (871)
+|.+++.|+.. -.+++|
T Consensus 260 dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIW 277 (405)
T ss_pred CccEEEeccccceeEEEE
Confidence 99999887633 345565
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-22 Score=221.41 Aligned_cols=280 Identities=17% Similarity=0.283 Sum_probs=221.4
Q ss_pred EEEEEEcCCCC-EEEEEE----------cCCeEEEEeCCCC--c----eeEEeeecCCCEEEEEEeCCCCE----EEEEe
Q 002881 18 VKSVDLHPSEP-WILASL----------YSGTVCIWNYQSQ--T----MAKSFEVTELPVRSAKFVARKQW----VVAGA 76 (871)
Q Consensus 18 v~~i~~s~~~~-~la~~~----------~dg~v~iwd~~~~--~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~ 76 (871)
--.++|+|+++ ++|+|. .+.++.||.+.-. + .+-.+. ...+-+.++|.+.|.. |+.|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence 34689999997 666553 2455666655432 2 222222 3457889999998876 88889
Q ss_pred CCCeEEEEECCCC------cEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEE-eecCCcceEEE
Q 002881 77 DDMFIRVYNYNTM------DKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQI-FEGHSHYVMQV 148 (871)
Q Consensus 77 ~dg~i~iw~~~~~------~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~ 148 (871)
+||.|.+||...- ..+.+...|.+.|..+.|++.+. .|++|+.||.|.|||+.+....... -......|.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999997642 23455678999999999999765 9999999999999999875322222 12245679999
Q ss_pred EEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCC--CeeEEEEeecCCcCEEEEEeCC--CeEEEEECCC-CceEE
Q 002881 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--GVNCVDYFTGGDKPYLITGSDD--HTAKVWDYQT-KSCVQ 223 (871)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~~l~~~~~d--g~i~v~d~~~-~~~~~ 223 (871)
+|+.+...+|++++.+|.+.|||++..+++..+..+.. .+..+.|+|+....++++..+| -.|.+||++. ..+++
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 99998889999999999999999999988887765544 4678999999876444444444 3699999985 45678
Q ss_pred EecCcccCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC-eEEEEEcCCeEEEe
Q 002881 224 TLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGYDEGTIMVK 298 (871)
Q Consensus 224 ~~~~~~~~v~~i~~~p~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~g~~dg~i~i~ 298 (871)
.+++|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..+....+.+..+.|+|... .+++++-+|.|.|+
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 888999999999999977 7899999999999999999999999999888999999999876 78889999999875
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.3e-20 Score=185.49 Aligned_cols=253 Identities=19% Similarity=0.275 Sum_probs=192.5
Q ss_pred eCCCCceeEEeeecCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCC----cEEEEEccCCCCeEEEEEcCCC-CEEE
Q 002881 43 NYQSQTMAKSFEVTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHPTL-PYVL 115 (871)
Q Consensus 43 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~i~~~~~~-~~l~ 115 (871)
|+.+.........+..+|++++|+|.. +.+++|+..|+|-+||+.+. ..+..+..|+.+|.+|.|+|.+ ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 333444555667788999999999965 57888888999999999532 3456678999999999999954 5799
Q ss_pred EEECCCeEEEEECCCCceEEEEeec--CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-eEEEecCCCCeeEEE
Q 002881 116 SSSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVD 192 (871)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~ 192 (871)
+.|.||+|++-|+++. .....+.. ....+.++.|+. +...++.+..=|...+||++.+.. ...+..|...|..++
T Consensus 252 ssSyDGtiR~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGN-ISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeccCceeeeeeecch-hhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 9999999999999876 22222222 345567788887 555666666667999999998765 566778888999999
Q ss_pred EeecCCcCEEEEEeCCCeEEEEECCCCc----eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC----CCeEE
Q 002881 193 YFTGGDKPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRLE 264 (871)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~----~~~~~ 264 (871)
++|-... ++++++.|++.+|||++.-. ++...-.|...|.+..|||.+..|+|.+.|..|+|||.. ...+.
T Consensus 330 ~NP~~p~-~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 330 LNPVCPW-FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred cCCCCch-heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence 9998765 89999999999999998522 233444589999999999999889999999999999973 22333
Q ss_pred EEEecCCc-----cEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 265 NTLNYGLE-----RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 265 ~~~~~~~~-----~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.++..... ......|.|+.+++++|.--..|-+.
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEE
Confidence 33332211 23457899999999988766665553
No 157
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=3.2e-21 Score=191.15 Aligned_cols=238 Identities=17% Similarity=0.300 Sum_probs=199.2
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002881 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM---DKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (871)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~ 129 (871)
.|..-|.++.+|...+.+++|+. |.|+|||+... .++..+. .....|+++..+|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 36677888899999999999875 77999998642 2233332 245689999999999999999999999999998
Q ss_pred CCceEE-EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC
Q 002881 130 KGWMCT-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (871)
Q Consensus 130 ~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d 208 (871)
.....+ ..+.........++.+| +.+..+++..||.|.|||+.+...++.+.+|..++.||.++++|.+ |.+|+-|
T Consensus 496 apTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtk--lWTGGlD 572 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTK--LWTGGLD 572 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCce--eecCCCc
Confidence 652222 22222334567788999 8999999999999999999999999999999999999999999984 9999999
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEE
Q 002881 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (871)
Q Consensus 209 g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 288 (871)
.+|+.||+++++.++... ....|.++.++|++.++++|-+++.+.+.... +.....+..|..-|.++.|.+.|+++++
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeee
Confidence 999999999988766554 56789999999999999999999999998854 4555567778889999999999999999
Q ss_pred EEcCCeEEEe
Q 002881 289 GYDEGTIMVK 298 (871)
Q Consensus 289 g~~dg~i~i~ 298 (871)
.+.|..+..|
T Consensus 651 tGkDnlLnaw 660 (705)
T KOG0639|consen 651 TGKDNLLNAW 660 (705)
T ss_pred cCchhhhhhc
Confidence 9999988877
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=7.5e-21 Score=182.53 Aligned_cols=240 Identities=21% Similarity=0.332 Sum_probs=183.3
Q ss_pred cCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECC----------------CCcEEEEEccCCCCeEEEEEcCC-CCEEEE
Q 002881 56 TELPVRSAKFVARK--QWVVAGADDMFIRVYNYN----------------TMDKVKVFEAHTDYIRCVAVHPT-LPYVLS 116 (871)
Q Consensus 56 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~----------------~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~ 116 (871)
|.+.++-+.-++-+ .+.++-+..|.|.||++. ..+++.++.+|...=..++|||- ...|++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 55566666666654 455566779999999974 23567788899999999999993 235888
Q ss_pred EECCCeEEEEECCCCceE--EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC--CeEEEecCCCCeeEEE
Q 002881 117 SSDDMLIKLWDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVD 192 (871)
Q Consensus 117 ~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~ 192 (871)
|..-+.|++|...++.-. ...+.+|+..|-.++|+|...+.|++|+.||+|+|||++++. +....+.|.+.|+.+.
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVIS 309 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVIS 309 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEE
Confidence 888899999998876222 234667999999999999889999999999999999999873 2333478999999999
Q ss_pred EeecCCcCEEEEEeCCCeEEEEECCC---CceEEEecCcccCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeE-----
Q 002881 193 YFTGGDKPYLITGSDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRL----- 263 (871)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~~~dg~v~iwd~~~~~~----- 263 (871)
|+.... +|++|++||+++|||++. ++++..++-|..+|+++.|+|.. ..|+++|.|.+|.+||+..-.-
T Consensus 310 Wnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 310 WNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred ccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 986654 899999999999999985 67889999999999999999954 5788889999999999853211
Q ss_pred -----------EEEEec--CCccEEEEEEeeCCC-eEEEEEcCCeEEE
Q 002881 264 -----------ENTLNY--GLERVWAIGYMKSSR-RIVIGYDEGTIMV 297 (871)
Q Consensus 264 -----------~~~~~~--~~~~i~~i~~~~~~~-~l~~g~~dg~i~i 297 (871)
.+.+-. ....+..+.|+++-+ ++++.+.+|.-.+
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 011111 224566788888744 4555555665444
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=7.8e-21 Score=188.29 Aligned_cols=262 Identities=13% Similarity=0.189 Sum_probs=210.9
Q ss_pred CEEEEEEcCCCCEEEEEE--cCCeEEEEeCCCCc---eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 17 RVKSVDLHPSEPWILASL--YSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~--~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
.+.++.|+.... |++++ .|..|++|. ..|+ ....-......-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 489999998664 55543 477899998 3333 1111111122334555555558999999999999999997777
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC-CcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
.+.++.|.+.|+++.++....+|++++..|.|.|..+.++ .....+... ...|.-+.|+|....+|.+++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 7888999999999999999999999999999999999987 333344333 44566899999777788899999999999
Q ss_pred ECCCCCCeEEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 171 NLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 171 d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
|+.+..++..+ ..|..+...++|+|.... ++++.+.|..|.+||.+.......+. ...+.+.++|.++|.+|+.|+.
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccc-eEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC
Confidence 99988887765 578899999999998765 89999999999999998766655554 5678999999999999999999
Q ss_pred CCcEEEEeCCCC-eEEEEEecCCccEEEEEEeeCC
Q 002881 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSS 283 (871)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~ 283 (871)
.|.|..||++.. .++.++..|...|++++|-|..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999864 4788888898999999998765
No 160
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=3.5e-20 Score=194.59 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=142.7
Q ss_pred hhHhHHHHHHccCHHHHhhhCCCCCcchh-HHHHHHHHhCCChhhhhhccc----------------Cc---ccc-eeee
Q 002881 591 SLIEYKTLVMRGDLERANEILPSIPKEHH-NSVARFLESRGMIEEAIEVAT----------------DP---DYR-FELA 649 (871)
Q Consensus 591 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~~~~~~~~~~~~a~~~~~----------------~~---~~~-f~~~ 649 (871)
.+++|+..+..|+++.|.+.++.|+.+.. +++++++.+..+++.|.-+.. ++ +.+ --+|
T Consensus 731 aml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 731 AMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred hhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 56677777778999999999999998877 799999999888887764422 22 112 2578
Q ss_pred eccCCHHHHHHHHHH-----------------------------------------------------------------
Q 002881 650 IQLGRLEVAQEIATE----------------------------------------------------------------- 664 (871)
Q Consensus 650 l~l~~~~~A~~~~~~----------------------------------------------------------------- 664 (871)
++||++++|..++++
T Consensus 811 ieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 888888888888765
Q ss_pred ------------------cCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 002881 665 ------------------VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKN 726 (871)
Q Consensus 665 ------------------~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~ 726 (871)
..++++|+++|++.+..|+++.|+..|..++|+-.+.++.+..|+ +.+.+++|.+.|+.
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk---~~kAa~iA~esgd~ 967 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK---TDKAARIAEESGDK 967 (1416)
T ss_pred HHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC---chHHHHHHHhcccH
Confidence 122669999999999999999999999999999999999999999 77888899999988
Q ss_pred hHHHHHHHH---cCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002881 727 NVAFLCLFM---LGKLEDCLQLLVESNRIPEAALMARSYLP 764 (871)
Q Consensus 727 ~~a~~~~~~---~g~~~~a~~l~~~~~~~~~A~~la~~~~~ 764 (871)
....+++.. -|++-+|+..|.+..-+.-|+.+++.+..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 887777544 47899999999999999999999998876
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=4.4e-20 Score=173.63 Aligned_cols=273 Identities=19% Similarity=0.286 Sum_probs=214.8
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCC------------ceeEEeee-cCCCEEEEEEe-------CCCCEEEEEeC
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQ------------TMAKSFEV-TELPVRSAKFV-------ARKQWVVAGAD 77 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~------------~~~~~~~~-~~~~v~~~~~~-------~~~~~l~~~~~ 77 (871)
.+.+.|+|||..|++-+.|..+.+|++... +...+++. ....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567889999999999999999999997431 11112222 23467788886 57788999999
Q ss_pred CCeEEEEECCCCcEEEEEcc--CCC---CeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCceEEE--E----eecCCcce
Q 002881 78 DMFIRVYNYNTMDKVKVFEA--HTD---YIRCVAVHPTLPYVLSSSDDMLIKLWDW-EKGWMCTQ--I----FEGHSHYV 145 (871)
Q Consensus 78 dg~i~iw~~~~~~~~~~~~~--~~~---~i~~i~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~--~----~~~~~~~v 145 (871)
+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|+.|. ...|+++|+ +.++.+.. + ..+..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999988777653 333 346899999999998765 569999999 44422211 1 12346778
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe-CCCeEEEEECCC-CceEE
Q 002881 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQT-KSCVQ 223 (871)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~ 223 (871)
.+++|+|.+...+++++...++-+|.-....+...+-+|.++|+.++|.++|++ +.+|+ .+..|..||++. +.++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~--lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNK--LFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCe--ecccccCCCeEEEEeehhccchhh
Confidence 999999988889999999999999998899999999999999999999999984 66665 477899999985 55666
Q ss_pred EecCccc-C--eEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEEecCCccEEEEEEeeCCCeEEEEEcCC
Q 002881 224 TLEGHTH-N--VSAVCFHPELPIIITGSEDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 224 ~~~~~~~-~--v~~i~~~p~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg 293 (871)
.+..|.. . =.-....|.+++|++|+.||.|++||+++ +..+..+..+...+..++++|--+.+|+++...
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 7766654 2 22345678999999999999999999998 666778888888999999999988877766443
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.8e-20 Score=185.60 Aligned_cols=244 Identities=20% Similarity=0.279 Sum_probs=196.7
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCC--EEEEEECCC------
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDM------ 121 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg------ 121 (871)
-..+.+|.+.|+++...|.|.+|++|+.||+|+||.+.||++++++.- .+.|.|++|+|.+. .|+++....
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 345778999999999999999999999999999999999999998873 55899999999764 344433322
Q ss_pred --------------------------eEEEEECCC---CceEEEEeecCCcceEEEEEecCCCCEEEEEECC---CcEEE
Q 002881 122 --------------------------LIKLWDWEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD---RTIKI 169 (871)
Q Consensus 122 --------------------------~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i 169 (871)
.+..|.-.. ...-..+...|...|.++.|+. .+.+|++...+ ..|.|
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEE
Confidence 222332221 1111234456888999999998 78899887654 57899
Q ss_pred EECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
+++........+....+.|.++.|+|... ++++++ ...|++||+.....+..+......|.+++.||.|.-|+.|+.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCc--eEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99987766666666778899999999766 677766 468999999987777777777788999999999999999999
Q ss_pred CCcEEEEeCCCC-eEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
|+.+..+|+.-. +..+++..|...++++++++.-.++++|++||.++++
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999998754 4677888898999999999999999999999999885
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=5.7e-20 Score=173.45 Aligned_cols=282 Identities=22% Similarity=0.401 Sum_probs=216.5
Q ss_pred hcccCCCCEEEEEEcC----CCC-EEEEEEcCCeEEEEeCCCCceeEEee-----ecCCCEEEEEEeCC----CCEEEEE
Q 002881 10 KLAQRSERVKSVDLHP----SEP-WILASLYSGTVCIWNYQSQTMAKSFE-----VTELPVRSAKFVAR----KQWVVAG 75 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~----~~~-~la~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~l~~~ 75 (871)
..+.|+.+|..++|++ +.+ .+|+++ .+.+.+|+......++.++ .|+.....++|+-+ ..++|+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999996 334 444544 6689999987654333333 25566788889764 4579999
Q ss_pred eCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEe---ecCCcceEEEEEe
Q 002881 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIF---EGHSHYVMQVTFN 151 (871)
Q Consensus 76 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~ 151 (871)
+.-|.|+|.|+.+++....+.+|...|..+.++|+. ++++++|.|..|++|++++. .+..++ .+|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEEEEecccccccCcEEEEEEc
Confidence 999999999999999999999999999999999975 57889999999999999998 666665 4699999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCC---------------------------eE-EEecCCCCeeEEEEeecCCcCEEE
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSPDP---------------------------NF-TLDAHQKGVNCVDYFTGGDKPYLI 203 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------~~-~~~~~~~~i~~i~~~~~~~~~~l~ 203 (871)
+ ++..+++++.|.+|++|++...+. .+ +-.-|...|.|+.|.- + +++
T Consensus 191 ~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d--~il 265 (385)
T KOG1034|consen 191 L-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D--FIL 265 (385)
T ss_pred C-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h--hee
Confidence 9 788999999999999999973211 00 1234566677777753 3 799
Q ss_pred EEeCCCeEEEEECC-CCc-------------eEEEecCcccCeEEEE--EcCCCCEEEEEECCCcEEEEeCCCCeEE--E
Q 002881 204 TGSDDHTAKVWDYQ-TKS-------------CVQTLEGHTHNVSAVC--FHPELPIIITGSEDGTVRIWHATTYRLE--N 265 (871)
Q Consensus 204 ~~~~dg~i~v~d~~-~~~-------------~~~~~~~~~~~v~~i~--~~p~~~~l~~~~~dg~v~iwd~~~~~~~--~ 265 (871)
+-+.++.|..|... -++ .+..+.-....|+-+. |.|-++.|+.|...|.|.+||+....+. .
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 99999999999872 111 1233333444566554 5677889999999999999999876542 2
Q ss_pred EE--ecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 266 TL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 266 ~~--~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
++ ......|...+|+.|+..|+..++|++|.-|
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 22 2334679999999999999999999998765
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.6e-20 Score=184.60 Aligned_cols=265 Identities=17% Similarity=0.271 Sum_probs=207.9
Q ss_pred EEEEEcCCeEEEEeCCCCceeEEeeecC--CCEEEEEEeCCCCEEEEE--eCCCeEEEEECCCC--cEEEEEccCCCCeE
Q 002881 30 ILASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAG--ADDMFIRVYNYNTM--DKVKVFEAHTDYIR 103 (871)
Q Consensus 30 la~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~--~~~~~~~~~~~~i~ 103 (871)
|.+++....+++||....+....+..|. ..+.++.|+.+.. |+++ +.|..+++|.-... +....-+...+.-.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence 3344445679999998776665555442 3488899987765 4444 45788999974322 22222222233456
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec
Q 002881 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA 183 (871)
Q Consensus 104 ~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 183 (871)
|++......++++|+..+.|+|||++.. .+.+.+.+|...|+++.++- ...++++++..|.|.+..+.++.....+..
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec
Confidence 6666666689999999999999999965 78888999999999999998 678999999999999999988877666654
Q ss_pred C-CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEe-cCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCCC
Q 002881 184 H-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATT 260 (871)
Q Consensus 184 ~-~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~ 260 (871)
. ...|.-+.|++.... +|.+++++|.|.+||+....++..+ ..|..+...|||+|... +|++.|.|..|.+||+..
T Consensus 162 ~sgqsvRll~ys~skr~-lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRF-LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred CCCCeEEEeecccccce-eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 4 344568999988764 7889999999999999987776554 56899999999999664 778899999999999998
Q ss_pred CeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 261 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
.+....+.+. .+..+++|+++|.+|++|+..|.++.+.
T Consensus 241 ~~s~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 241 QASTDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred ccccceeeec-CCcceeeecCCceEEEeecCCceEEEEe
Confidence 7777777665 6789999999999999999999998863
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=5.2e-20 Score=188.43 Aligned_cols=277 Identities=20% Similarity=0.265 Sum_probs=203.4
Q ss_pred EEEEcC---CCCEEEEEEcCCeEEEEeCCCCce------eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002881 20 SVDLHP---SEPWILASLYSGTVCIWNYQSQTM------AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (871)
Q Consensus 20 ~i~~s~---~~~~la~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 90 (871)
+..|++ ....||++..+|.|.++|...... .+....|...|..+.|.|....|++++.|.++++||+++.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356665 244788999999999999765432 24556799999999999977889999999999999999988
Q ss_pred EEEE--EccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCc------eEEEE--------------------eecC
Q 002881 91 KVKV--FEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGW------MCTQI--------------------FEGH 141 (871)
Q Consensus 91 ~~~~--~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~------~~~~~--------------------~~~~ 141 (871)
.... +.+|...+.+++|.|..+ .+++|+.||.|.|||++-.. ..... ...+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 889999999999999765 67899999999999987431 00000 1112
Q ss_pred Cc----ceEEEEEecCCCCEEEEEEC-CCcEEEEECCCCCCeEEE--------ecC---CCCeeEEEEeecCCcCEEEEE
Q 002881 142 SH----YVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPNFTL--------DAH---QKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 142 ~~----~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--------~~~---~~~i~~i~~~~~~~~~~l~~~ 205 (871)
.. .|+.+.|- |+..|++++. |+.|+|||++........ ..+ ..++.++.....|. ++++.
T Consensus 214 s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt--~L~As 289 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT--YLFAS 289 (720)
T ss_pred cCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC--eEEEE
Confidence 22 24445554 7889999888 999999999876543222 122 23455555544444 78888
Q ss_pred eCCCeEEEEECCCC--ceEEEecCcccC--eEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEEecCCccEEEEEEe
Q 002881 206 SDDHTAKVWDYQTK--SCVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYM 280 (871)
Q Consensus 206 ~~dg~i~v~d~~~~--~~~~~~~~~~~~--v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~i~~~ 280 (871)
+.|+.|++|++.+- .++..+.++... -..-..+|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 88999999999853 234444443222 1223578999999999999999999988765 345566777789999998
Q ss_pred eC-CCeEEEEEcCCeEEEecC
Q 002881 281 KS-SRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 281 ~~-~~~l~~g~~dg~i~i~~~ 300 (871)
|. -.-++++++|..+.+|..
T Consensus 370 pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cccCCCceeeccCcceEEEec
Confidence 85 345677799999999843
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.6e-19 Score=175.44 Aligned_cols=279 Identities=20% Similarity=0.260 Sum_probs=209.7
Q ss_pred CCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCc---------eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 14 RSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT---------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 14 h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
...+|.++.|+++.. .+|+|+.|..|+||-+..+. ....+..|...|+++.|+|+|..|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 356899999999876 99999999999999876432 23355679999999999999999999999999999
Q ss_pred EECC--------C--------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEE
Q 002881 84 YNYN--------T--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (871)
Q Consensus 84 w~~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 147 (871)
|-.. + ....+.+.+|.+.|..++|+|++.++++++-|..+++||+..+ .....+..|.+.+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeeccccccccce
Confidence 9765 2 1234556789999999999999999999999999999999998 788889999999999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe-----------------------cCCCCeeEEEEeecCCcCEEEE
Q 002881 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-----------------------AHQKGVNCVDYFTGGDKPYLIT 204 (871)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------~~~~~i~~i~~~~~~~~~~l~~ 204 (871)
++|.| -++++++-+.|...+.+++...+.+.... ....-...++|+|+|. ++++
T Consensus 171 vawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~--llvt 247 (434)
T KOG1009|consen 171 VAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS--LLVT 247 (434)
T ss_pred eecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc--EEEc
Confidence 99999 78899998888877777765432221110 0111234567888876 5655
Q ss_pred EeC----CC-----eEEEEECCC-CceEEEecCcccCeEEEEEcC------------------CCCEEEEEECCCcEEEE
Q 002881 205 GSD----DH-----TAKVWDYQT-KSCVQTLEGHTHNVSAVCFHP------------------ELPIIITGSEDGTVRIW 256 (871)
Q Consensus 205 ~~~----dg-----~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p------------------~~~~l~~~~~dg~v~iw 256 (871)
... .+ ..++|+-.. .++...+.....+...+.++| -+-.++.++. ..|.+|
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvy 326 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVY 326 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEe
Confidence 431 12 234444332 345555665566666666655 2234566665 489999
Q ss_pred eCCCCeEEEEE-ecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 257 HATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 257 d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
|..+-.+...+ +.|-..++.++|++||..+++.+.||...+
T Consensus 327 dtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 327 DTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 98887655443 446678999999999999999999998765
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-20 Score=190.74 Aligned_cols=261 Identities=21% Similarity=0.309 Sum_probs=201.4
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC--------CceeEEeeecCCCEEEEEEeCCCCEEEEEeC
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS--------QTMAKSFEVTELPVRSAKFVARKQWVVAGAD 77 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 77 (871)
.++.++..|.+.|+.++|+|..+.|++++.||++.+|+++. -+++.+|.+|.+||.|++..+++..+++|+.
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 34556778999999999999999999999999999999932 2567789999999999999999999999999
Q ss_pred CCeEEEEECCC----------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEE
Q 002881 78 DMFIRVYNYNT----------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (871)
Q Consensus 78 dg~i~iw~~~~----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 147 (871)
||+|+.|++.. ......+.+|.+.++.+++|+...+|++++.||++++|+......+........+...+
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLS 444 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcce
Confidence 99999997642 12345677999999999999999999999999999999987663322222222344556
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec-------CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc
Q 002881 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS 220 (871)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 220 (871)
+.+-.......++...-+.-.++++........+.. ....++.+.++|... +.+++..|+.|+++|..++.
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~--~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD--ITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC--eeEecccCCceecccccccc
Confidence 666542223333333334334444444333333321 123467788888775 89999999999999999999
Q ss_pred eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 002881 221 CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (871)
Q Consensus 221 ~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (871)
++.....|...++++++.|+|.+|++++.||.+++|.+..........
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 999999999999999999999999999999999999987655544433
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.2e-21 Score=209.57 Aligned_cols=246 Identities=19% Similarity=0.298 Sum_probs=203.3
Q ss_pred CCCEEEEEEcCCCCE----EEEEEcCCeEEEEeCCCC------ceeEEeeecCCCEEEEEEeCCCC-EEEEEeCCCeEEE
Q 002881 15 SERVKSVDLHPSEPW----ILASLYSGTVCIWNYQSQ------TMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~----la~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i 83 (871)
..+-..++|.+.|.. ||.|+.||.|.+||...- ..+.+...|.++|..+.|++.+. +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 457889999997775 788888999999997652 34556778999999999999765 9999999999999
Q ss_pred EECCCCcEEEEEc--cCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCC--cceEEEEEecCCCCEE
Q 002881 84 YNYNTMDKVKVFE--AHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTF 158 (871)
Q Consensus 84 w~~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l 158 (871)
||++..+.-.... ...+.|.+++|+.. ...|++++.+|.+.|||++....+.. +..+. ..+..+.|+|+....+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~-ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK-LSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc-cccCCCccceeeeeeCCCCceee
Confidence 9998754433332 24678999999985 45678889999999999998744333 33333 3477899999888888
Q ss_pred EEEECCC---cEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEE
Q 002881 159 ASASLDR---TIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA 234 (871)
Q Consensus 159 ~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 234 (871)
++++.|. .|.+||+|.. .+.+.+++|..+|.++.|++.+.. ++++++.|+.|.+|+..+++.+..+....+.+..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCch-hhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 8888765 5899999864 467778899999999999998754 8999999999999999999999999988889999
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEeCCCCe
Q 002881 235 VCFHPELP-IIITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 235 i~~~p~~~-~l~~~~~dg~v~iwd~~~~~ 262 (871)
+.|+|..+ .+++.+-||.|.|+.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999887 88888999999999977543
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.4e-18 Score=169.04 Aligned_cols=319 Identities=18% Similarity=0.296 Sum_probs=208.3
Q ss_pred CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC---------eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEE
Q 002881 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (871)
Q Consensus 142 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~ 212 (871)
..++.++.|.+.+.+.+++|+.|..|++|-+..+.+ ...+..|...|+++.|+|+|+ ++++|+++|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence 356899999986666999999999999999865432 234568999999999999998 899999999999
Q ss_pred EEECC--------C--------CceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEE
Q 002881 213 VWDYQ--------T--------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (871)
Q Consensus 213 v~d~~--------~--------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~ 276 (871)
+|-.. + ......+.+|...|..++|+|++.++++++.|..+++||+..|+....+..|..-+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 99765 2 1234566789999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCC
Q 002881 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (871)
Q Consensus 277 i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (871)
++|.|-++++++-+.|...+.. +....+.+..... .+..... ...++...+++..-.+...+.
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~--------~~~~~~~~~~~~~-~~m~~~~--------~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGF--------SAKLKQVIKRHGL-DIMPAKA--------FNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eecchhhhhhhhhccCccccee--------eeeeeeeeeeeee-eEeeecc--------cCCCCcceeeeeecCchhhhh
Confidence 9999999999997777633332 1111111110000 0000000 011111122222223444466
Q ss_pred ceEEECCCCCEEEEEc-----CCcEEEEEeecccccCc-CceeEEEEecC-CcE-EEEecCCeEEEeecccccceeeecC
Q 002881 357 QSLKHNPNGRFVVVCG-----DGEYIIYTALAWRNRSF-GSALEFVWSSD-GEY-AVRESSSKIKIFSKNFQEKRSVRPT 428 (871)
Q Consensus 357 ~~~~~s~~g~~lav~~-----~~~~~i~~~~~~~~~~~-~~~~~~~~s~~-~~~-~~~~~~~~i~i~~~~~~~~~~~~~~ 428 (871)
..++|+|||.+|++.. ++.+.......+..+.. .++..+ |. ++. +++... -..|.+........ .-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l---p~~~k~~lavr~~--pVy~elrp~~~~~~-~~ 307 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL---PSPKKPALAVRFS--PVYYELRPLSSEKF-LF 307 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec---CCCCcceEEEEee--eeEEEecccccccc-cc
Confidence 7899999999887654 33332222111111111 011111 11 111 111110 00111110000000 00
Q ss_pred ccceeeecCcEEEEEeCCeEEEEeccCCcEEEEEE----cceeEEEEcCCCCEEEEEeCCeEEEE
Q 002881 429 FSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASDTSFYIL 489 (871)
Q Consensus 429 ~s~~~i~~~~~La~~~~~~v~~~d~~~~~~~~~~~----~~i~~i~~s~~~~~la~~~~~~~~~l 489 (871)
.-| .+-.+|+++.+.|++||.++.+++.... ..++.++||+||..+++.+.|+++-+
T Consensus 308 ~lp----yrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 308 VLP----YRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ccc----cceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 112 2667889999999999999988877655 48999999999999999999998843
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=171.90 Aligned_cols=272 Identities=15% Similarity=0.204 Sum_probs=204.4
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEE--ccCC-CCe
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIRVYNYNTMDKVKVF--EAHT-DYI 102 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~-~~i 102 (871)
..+|++.++|.|++||..+++.+..++++...++.+.|.. ....+.+++.||+|++||+++......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5699999999999999999999999999999999999987 4667889999999999999876654443 3444 567
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCce-EEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC-
Q 002881 103 RCVAVHPTLPYVLSSSD----DMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD- 176 (871)
Q Consensus 103 ~~i~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~- 176 (871)
.|++.+..++.+++|+. +-.|.+||++...+ +......|...|+++.|+|+++++|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 78888777888888764 67899999998756 5566778999999999999999999999999999999997653
Q ss_pred --CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc------------cCeEEEEEcCCCC
Q 002881 177 --PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------------HNVSAVCFHPELP 242 (871)
Q Consensus 177 --~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------------~~v~~i~~~p~~~ 242 (871)
.+...-.+...|.++.|..++-+ -|.+-+......+|++..+.+...+.... ..+...-...+..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk-rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK-RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc-eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 22222346677999999987733 37778888999999999887655443221 0111111122334
Q ss_pred EEEEEEC-CCcEEEEeCC---CC---eEEEEEec-CCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 243 IIITGSE-DGTVRIWHAT---TY---RLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 243 ~l~~~~~-dg~v~iwd~~---~~---~~~~~~~~-~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
..++++. -|...++-+. ++ +.+..+.. +..-|.++.|...+..+.+|++||.+.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 5555444 4555555433 22 23344444 4456788889888999999999999999964
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.6e-16 Score=176.81 Aligned_cols=285 Identities=28% Similarity=0.488 Sum_probs=230.6
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc-eeEEeeecC-CCEEEEEE-eCCCC-EEEEEeC-CCeEEEE
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-MAKSFEVTE-LPVRSAKF-VARKQ-WVVAGAD-DMFIRVY 84 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~iw 84 (871)
.+..|...+.++.+++.+..++.++.++.+.+|+...+. ....+..+. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999988876 666666644 37777877 88887 5555445 9999999
Q ss_pred ECCC-CcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC-EEEEE
Q 002881 85 NYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASA 161 (871)
Q Consensus 85 ~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~ 161 (871)
+..+ ......+..|...|..++|+|++..+++++. |+.+.+|+.... .....+.+|...|.+++|+| ++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcC-CcceEEEEe
Confidence 9988 7888888999999999999999998888886 999999999985 56677777999999999998 555 55556
Q ss_pred ECCCcEEEEECCCCCCeE-EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-EEEecCcccCeEEEEEcC
Q 002881 162 SLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~i~~~p 239 (871)
+.|+.|.+||...+.... .+..|.... ...|++++. ++++++.++.+++|+...... ...+..|...+.++.|+|
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS--LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC--EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 999999999988666666 577777665 447888874 788999999999999987654 444467888999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEe--cCCccEEEEEEeeCCCeEEEE-EcCCeEEEec
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLN--YGLERVWAIGYMKSSRRIVIG-YDEGTIMVKI 299 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~g-~~dg~i~i~~ 299 (871)
++..+++++.|+.+.+|+..+........ .+...+..+.+.+++..++.+ ..++.+.+|.
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 88888889999999999988887666665 565568889883332556665 5667776653
No 172
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.1e-17 Score=173.83 Aligned_cols=417 Identities=16% Similarity=0.214 Sum_probs=270.9
Q ss_pred hhhhhcccCCCCEEEEEEcCCCC---EEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEE-----------------
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKF----------------- 65 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~---~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~----------------- 65 (871)
+..+.+.+|..+++++.+.|... ++.+++.+|.|++||...+.+++++..+- ++..+.+
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~ 126 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVED 126 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeeccc
Confidence 34568899999999999998654 66788899999999999998888776321 1222211
Q ss_pred ------------------------------------------eCCCCEEEEEeCCCeEEEEECCCCcEEEE----EccCC
Q 002881 66 ------------------------------------------VARKQWVVAGADDMFIRVYNYNTMDKVKV----FEAHT 99 (871)
Q Consensus 66 ------------------------------------------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~ 99 (871)
++.|...... .+..+.+|+..+...... -..|.
T Consensus 127 ~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Ht 205 (792)
T KOG1963|consen 127 YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHT 205 (792)
T ss_pred ceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhc
Confidence 1111111111 123456666655331111 12467
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002881 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (871)
Q Consensus 100 ~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (871)
..++|.++||+++++++|..||.|.+|.--. .....+.+.-|...|+++.|++ ++.+|++|+..|.+.+|.+.+++
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC
Confidence 7789999999999999999999999996433 2233456667888999999999 89999999999999999999988
Q ss_pred CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc-----------ccCeEEEEEcCCCCEEE
Q 002881 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-----------THNVSAVCFHPELPIII 245 (871)
Q Consensus 177 ~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~v~~i~~~p~~~~l~ 245 (871)
..-+..-.++|..+.++|+++ +.+....|..|.+....+.....++.+. .+-.+.++++|.-+.++
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -cccccccCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 444555678999999999988 6888888999999988665544433321 23367889999777888
Q ss_pred EEECCCcEEEEeCCCCeEEEEEec-----CCc------cEEEEEEeeCCCeEEEEEcC--------CeEEEecCCCcceE
Q 002881 246 TGSEDGTVRIWHATTYRLENTLNY-----GLE------RVWAIGYMKSSRRIVIGYDE--------GTIMVKIGREEPVA 306 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~-----~~~------~i~~i~~~~~~~~l~~g~~d--------g~i~i~~~~~~~~~ 306 (871)
-.+..|.|.+||+.+.+.+..+.. +.+ .+++++.+..|++++++-.. |.+.
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~---------- 431 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS---------- 431 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE----------
Confidence 889999999999988775544331 112 24555556667776664321 1111
Q ss_pred EEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCC--EEEEEcCCcEEEEEeecc
Q 002881 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR--FVVVCGDGEYIIYTALAW 384 (871)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~lav~~~~~~~i~~~~~~ 384 (871)
.-+|......+.+.+... +.. ++....+..+..+|... .+.++.+|.+.+|.....
T Consensus 432 ------LKFW~~n~~~kt~~L~T~---I~~-------------PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 432 ------LKFWQYNPNSKTFILNTK---INN-------------PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ------EEEEEEcCCcceeEEEEE---Eec-------------CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 123444444444333221 111 22222333333444333 344446999999977432
Q ss_pred cc---------------cCcCceeEEEEecCCcEEEEecCCeEEEeecccc-cceeeec--Cccce-eee-----cCcEE
Q 002881 385 RN---------------RSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQ-EKRSVRP--TFSAE-RIY-----GGTLL 440 (871)
Q Consensus 385 ~~---------------~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~--~~s~~-~i~-----~~~~L 440 (871)
.+ -+..++...+|+.||..++.+.+++|.+||...+ +...... .+... .++ ....+
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGAL 569 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccce
Confidence 21 1234667889999999999999999999996552 1111110 11110 011 12234
Q ss_pred EEEeCCeEEEEeccCCcEEE
Q 002881 441 AMCSNDFICFYDWAECRLIR 460 (871)
Q Consensus 441 a~~~~~~v~~~d~~~~~~~~ 460 (871)
..++...+.+|++-+..+..
T Consensus 570 ~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 570 VHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred eeccCceEehHhhhhhheec
Confidence 44455589999998887766
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.7e-19 Score=170.35 Aligned_cols=243 Identities=21% Similarity=0.272 Sum_probs=196.4
Q ss_pred cCCCCEEEEEEcCC----CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECC
Q 002881 13 QRSERVKSVDLHPS----EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 13 ~h~~~v~~i~~s~~----~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~ 87 (871)
.|.+....++|+-| .++||+|+.-|.|+|.|+.+++....+.+|...|+.+.+.|+. ++++++|.|..|++||++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 37778888899764 4689999999999999999999999999999999999999976 678899999999999999
Q ss_pred CCcEEEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce------------------------EE---EE
Q 002881 88 TMDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM------------------------CT---QI 137 (871)
Q Consensus 88 ~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------------~~---~~ 137 (871)
+..++..+. +|.+.|.++.|+++|.+|++|+.|.+|++|++..... .. .+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999998874 7999999999999999999999999999999983210 00 01
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC-C-------------CCeEEEecCCCCeeEEEEeecCCcCEEE
Q 002881 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-P-------------DPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (871)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~-------------~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 203 (871)
-.-|..+|-|+.|- ++++++-+.++.|..|.... . +....+......++-+.|.-+.-+..|+
T Consensus 247 ~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 12367777788885 57899989999999998721 1 1123334455667778777776666899
Q ss_pred EEeCCCeEEEEECCCCceE--EEe--cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 204 TGSDDHTAKVWDYQTKSCV--QTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 204 ~~~~dg~i~v~d~~~~~~~--~~~--~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
.|...|.|.+||++...+. .++ ......|...+|+.++.+|+....|++|.-||.
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999999876552 112 223456889999999999999999999999984
No 174
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=164.30 Aligned_cols=384 Identities=13% Similarity=0.165 Sum_probs=234.4
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEEEEccC
Q 002881 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAH 98 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~ 98 (871)
-.+|||+|+++|+.+.- .+.|-|.++-+..+.+.. -..|.-+.|..|..+++++ ..++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46799999999998754 788888887766554443 3467889999998887765 56889999999988888888888
Q ss_pred CCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC---C
Q 002881 99 TDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---S 174 (871)
Q Consensus 99 ~~~i~~i~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---~ 174 (871)
..++.+++|||+|+.|+ +...+-.|.+|.+.+..... +.-.+..+..++|+| ++++.+.++.-...-.+.+. .
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHH
Confidence 88999999999996555 56668999999999862222 222234468899999 88888877753221112221 1
Q ss_pred CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEE
Q 002881 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (871)
Q Consensus 175 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~ 254 (871)
-.....+....-..+.+.|+|+|. . +.+||.--.-.+.... ..-.+..+.|+|.++++++|+.|+.+|
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~--~---------laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGN--W---------LAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCc--E---------EEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhh
Confidence 112233334445567889999887 3 4455532111111111 234578899999999999999999999
Q ss_pred EEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE-cCCeE-EEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCc
Q 002881 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY-DEGTI-MVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (871)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~-~dg~i-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (871)
+.+--+.+ |-+.++-.++ .|... .+......++ ....
T Consensus 236 vlnh~tWk------------------~f~eflhl~s~~dp~~~~~~ke~~~~~------------------ql~~----- 274 (447)
T KOG4497|consen 236 VLNHFTWK------------------PFGEFLHLCSYHDPTLHLLEKETFSIV------------------QLLH----- 274 (447)
T ss_pred hhceeeee------------------ehhhhccchhccCchhhhhhhhhcchh------------------hhcc-----
Confidence 87644333 3333322111 11111 1100000000 0000
Q ss_pred ceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCC--c-------EEEEEee--cccccCcCceeEEEEecCC
Q 002881 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDG--E-------YIIYTAL--AWRNRSFGSALEFVWSSDG 401 (871)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~--~-------~~i~~~~--~~~~~~~~~~~~~~~s~~~ 401 (871)
.+++|.|..--.-.+-.. . +.+-..+ +.++...-.+-.++|++|+
T Consensus 275 ------------------------~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds 330 (447)
T KOG4497|consen 275 ------------------------HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS 330 (447)
T ss_pred ------------------------cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence 011111110000000000 0 0000111 1122334455678888888
Q ss_pred cEEEEecC---CeEEEeecccccceeeec--------CccceeeecCcEEEEEeCC-eEEEEeccCCcEEEEEE-c-cee
Q 002881 402 EYAVRESS---SKIKIFSKNFQEKRSVRP--------TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID-V-TVK 467 (871)
Q Consensus 402 ~~~~~~~~---~~i~i~~~~~~~~~~~~~--------~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~~~~~-~-~i~ 467 (871)
.|+++..+ +.+.+||++......+-. .+.|. ...|++++.. .+++|.......+..-. + .|.
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~----~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~ 406 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG----RPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQ 406 (447)
T ss_pred eEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC----CceEEEEcCCceEEEEcCCCceEEecCCCCceee
Confidence 88888775 568899876543322221 34554 6777777776 89999876554444322 2 789
Q ss_pred EEEEcCCCCEEEEEeCCeEEEE
Q 002881 468 NLYWADSGDLVAIASDTSFYIL 489 (871)
Q Consensus 468 ~i~~s~~~~~la~~~~~~~~~l 489 (871)
.+.|+.+|+.++..++|.+++-
T Consensus 407 ~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 407 KLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred eEEecCCCcEEEEEcCCceEEE
Confidence 9999999999999999988763
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=7.3e-19 Score=162.93 Aligned_cols=250 Identities=19% Similarity=0.280 Sum_probs=196.3
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcC--------CeEEEEeCCCC---------ceeEEee-ecCCCEEEEEEeCC
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYS--------GTVCIWNYQSQ---------TMAKSFE-VTELPVRSAKFVAR 68 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~d--------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~ 68 (871)
+.+.|..|.+.|..++-+|..+.+++..++ ....||.+... +.+..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 346778899999999999966655443332 24789987542 2223333 24468999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCcE-EEEEc-----cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEEeec
Q 002881 69 KQWVVAGADDMFIRVYNYNTMDK-VKVFE-----AHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (871)
Q Consensus 69 ~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~~~~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (871)
+..+++-. |..|.+|++..+.. +..+. .|....++-+|+| +++.+++. .|+++..||+++......+-..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 99998876 78899999987765 33332 3566788999999 67777665 5689999999988677777778
Q ss_pred CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC
Q 002881 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 141 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 219 (871)
|...|..+.|+|+...+|++|+.||.|++||.+.. .+++.+.+|..-|+++.|+|..++ ++++|++|..|.+|...+-
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq-LiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ-LILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce-EEEecCCCceeEEEecccc
Confidence 99999999999988889999999999999999875 477889999999999999998776 9999999999999965320
Q ss_pred -----------------------------ceEEEecCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCC
Q 002881 220 -----------------------------SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (871)
Q Consensus 220 -----------------------------~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~ 259 (871)
..+.++..|...|.+++|+.-.+ ++++-|.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12345667889999999998777 56778999999886543
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=9.5e-19 Score=178.45 Aligned_cols=148 Identities=22% Similarity=0.336 Sum_probs=122.7
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCC-------CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
.|+.+.|+|-+...|++++.||.|++|.+..+ ++...+..|...|+++.|+|-..+ +|++++.|-+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeeh
Confidence 48899999999999999999999999998643 456778899999999999997655 8999999999999999
Q ss_pred CCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE-EEEEecCC-ccEEEEEEeeCCCeEEEEEcC
Q 002881 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL-ENTLNYGL-ERVWAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~-~~i~~i~~~~~~~~l~~g~~d 292 (871)
+++.....+.+|.+.|.+++|+|+|+.+++.+.||+|++|+.+++.. +..-.+.. .+--.+.|.-+|+++++.+-|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 99999999999999999999999999999999999999999876542 22222211 233456777777777765544
No 177
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=1.5e-18 Score=161.23 Aligned_cols=242 Identities=20% Similarity=0.351 Sum_probs=193.1
Q ss_pred cccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCC---CCEEEEEeCCCeEEEEEC
Q 002881 11 LAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR---KQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~ 86 (871)
-.+|.-.|.++.|-| |...+.+++.|.+++|||..+.+....|+ .++.|..-+|||- ..++|+|..+-.|++.|+
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 346888999999999 44466777889999999999988877776 5677888899984 457888999999999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCceEEEEe--------------ecCCcceEEEEEe
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIF--------------EGHSHYVMQVTFN 151 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~v~~~~~~ 151 (871)
.+|...+++.+|.+.|..+.|+|...+ |++|+.||.|++||++....+...+ ..|.+.|..++|.
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 999999999999999999999998775 6789999999999998542233322 3467789999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCeEEEe---cCCC----CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEE
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQK----GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~----~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 224 (871)
. ++.++++++.|..+++|+..+++....-. .|.. .+. +. +-+.+ .++---.++.+.++++-++..+..
T Consensus 256 S-d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~--vfv~~p~~~~lall~~~sgs~ir~ 330 (397)
T KOG4283|consen 256 S-DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSD--VFVLFPNDGSLALLNLLEGSFVRR 330 (397)
T ss_pred c-cchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccc--eEEEEecCCeEEEEEccCceEEEe
Confidence 8 89999999999999999998775322111 1111 111 22 11222 344444568999999999999999
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 225 LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 225 ~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
+..|...|.+..+-|+-+...+|..|+.+..|-.
T Consensus 331 l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 331 LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999889999999999999999999999999975
No 178
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.2e-17 Score=172.71 Aligned_cols=446 Identities=15% Similarity=0.207 Sum_probs=280.4
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECC
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYN 87 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iw~~~ 87 (871)
+.|....-..-.||+|+++++... +..|.||...++..++.+..|..+++.+.+.|... ++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 334444444456999999887765 67899999999999999999999999999988654 57789999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCC---CCEEE-EEECCC------------eEEEEECCCCc-eEEEEeecCCcceEEEEE
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPT---LPYVL-SSSDDM------------LIKLWDWEKGW-MCTQIFEGHSHYVMQVTF 150 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~---~~~l~-~~~~dg------------~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~ 150 (871)
.+..++++..+. ++..+.+.|. .+..+ .+..|. +++-+.+.+.. ........|.. -.++.+
T Consensus 91 ~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~ 168 (792)
T KOG1963|consen 91 DGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVD 168 (792)
T ss_pred CcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEE
Confidence 999999887543 3333433221 11122 222221 11111111110 00011112222 356777
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCCCCeEE----EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC----CceE
Q 002881 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----KSCV 222 (871)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~----~~~~ 222 (871)
++ .+.... ...+..+.+|.......... -..|...++|.+++|+++ ++++|..||+|.+|.--. ....
T Consensus 169 ~~-~ge~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~--~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 169 NN-SGEFKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER--YLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred cC-CceEEE-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc--eEEEeccCCcEEEEeccccccccccc
Confidence 76 444444 44566788888876541111 123556689999999988 899999999999996432 2235
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCC
Q 002881 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (871)
Q Consensus 223 ~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (871)
..+.-|...|.+++|+++|.+|++||..|.+.+|.+.+++ .+-++.-.++|..+.++||+...++...|..|.+-....
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 6677789999999999999999999999999999999988 455555668899999999999999999998887631110
Q ss_pred cceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002881 303 EPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~ 381 (871)
- .+. .. +.... +..++-+ .......+.+.++|.-+.++.++ .|.+++|+.
T Consensus 324 l---------~~k----~t-----Isgi~--~~~~~~k---------~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 324 L---------EIK----ST-----ISGIK--PPTPSTK---------TRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred h---------hhh----hh-----ccCcc--CCCcccc---------ccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 0 000 00 00000 0000000 11123456788888655666666 788999976
Q ss_pred ecccc----------cCcC------ceeEEEEecCCcEEEEec---------C--CeEEEeecccccce-----eeec--
Q 002881 382 LAWRN----------RSFG------SALEFVWSSDGEYAVRES---------S--SKIKIFSKNFQEKR-----SVRP-- 427 (871)
Q Consensus 382 ~~~~~----------~~~~------~~~~~~~s~~~~~~~~~~---------~--~~i~i~~~~~~~~~-----~~~~-- 427 (871)
...+. ...+ .++.++.+..|.++++.. + ..+++|-.+..... .+..
T Consensus 375 ~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH 454 (792)
T KOG1963|consen 375 YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH 454 (792)
T ss_pred cccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC
Confidence 54321 1111 234555555677766543 1 24788864433221 1110
Q ss_pred --Cccceeee---cCcEEEEEeCC-eEEEEeccCCc------------EEEEE-EcceeEEEEcCCCCEEEEEeCCeEEE
Q 002881 428 --TFSAERIY---GGTLLAMCSND-FICFYDWAECR------------LIRRI-DVTVKNLYWADSGDLVAIASDTSFYI 488 (871)
Q Consensus 428 --~~s~~~i~---~~~~La~~~~~-~v~~~d~~~~~------------~~~~~-~~~i~~i~~s~~~~~la~~~~~~~~~ 488 (871)
.+-...+. .....++++.+ .++||-+.+-+ .+..+ ..++...+|+.||..|+.+-++.+-+
T Consensus 455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Iti 534 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITI 534 (792)
T ss_pred CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEE
Confidence 11111111 12266677666 88888773222 12222 24789999999999888888888888
Q ss_pred EEecH
Q 002881 489 LKYNR 493 (871)
Q Consensus 489 l~~~~ 493 (871)
|.+..
T Consensus 535 wd~~~ 539 (792)
T KOG1963|consen 535 WDYDT 539 (792)
T ss_pred ecCCC
Confidence 87655
No 179
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=8.6e-19 Score=179.64 Aligned_cols=251 Identities=19% Similarity=0.288 Sum_probs=185.4
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEE--eeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVARK-QWVVAGADDMFIRVYN 85 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~ 85 (871)
+....|...|..+.|-|....|++++.|.+++.||+++++++.. +.+|.+.|.+++|.|.. ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 34557999999999999767889999999999999999888766 88999999999999965 5678999999999999
Q ss_pred CCCCc---------------------------EEEEEccCCCCeEE---EEEcCCCCEEEEEEC-CCeEEEEECCCCceE
Q 002881 86 YNTMD---------------------------KVKVFEAHTDYIRC---VAVHPTLPYVLSSSD-DMLIKLWDWEKGWMC 134 (871)
Q Consensus 86 ~~~~~---------------------------~~~~~~~~~~~i~~---i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~ 134 (871)
+.-.. .+..-.++...|.+ +.+..|...|++++. |+.|++||+++....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 84211 11112245555655 666678889999888 999999999975222
Q ss_pred EE-------EeecC---CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC--CeEEEecCCCCee--EEEEeecCCcC
Q 002881 135 TQ-------IFEGH---SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVN--CVDYFTGGDKP 200 (871)
Q Consensus 135 ~~-------~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~--~i~~~~~~~~~ 200 (871)
.. .+..| ...+.++.... .+.++++.+.|+.|++|++.+.. ++..+.++...-. .-..+|++.
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-- 330 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-- 330 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc--
Confidence 11 11122 33467777766 56666666679999999997643 3444443332211 122455555
Q ss_pred EEEEEeCCCeEEEEECCCCc-eEEEecCcccCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCe
Q 002881 201 YLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 201 ~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~i~~~p~~-~~l~~~~~dg~v~iwd~~~~~ 262 (871)
++++|+.|...++|.+.+.+ ....+.+|...|++++|.|.. .-+++++.|..+++|++..+-
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 89999999999999998754 456678899999999998853 357777999999999986543
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=3.3e-20 Score=195.07 Aligned_cols=284 Identities=19% Similarity=0.254 Sum_probs=231.7
Q ss_pred ChhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002881 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (871)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 82 (871)
.+.+..+.+.+|-..|.|..|...|.++++|+.|..|+||..+++.......+|.+.++.++.+.+..++++++.|..|+
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe-----ecCCcceEEEEEecCCCCE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~ 157 (871)
+|.+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+-. ..... ......+.++.|.. .+.-
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~-~~~~ 330 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFEN-NGDR 330 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc--ccccCCCCCCcccccceeeeeccc-cccc
Confidence 99999999999999999999999999954 7788999999998821 11111 11224456666665 6778
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~ 237 (871)
+++++.|+.-..|...... .+...+.-+..+.+.+ .+.+++-.+-.+++|++.+|+..+.+.+|...+..+.+
T Consensus 331 f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccccCCcccccchhhHhh------hhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcccccceeeeee
Confidence 8999999988877654211 1222222222222222 26677777889999999999999999999999999999
Q ss_pred cCCCCEE-EEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 238 HPELPII-ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 238 ~p~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
||-.+.+ .+++.||...|||+-.|..++....+.+.+....||++|+.++...+-|.+.|...
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 9976644 57899999999999999887777666678888999999999999999999988543
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=7.2e-18 Score=180.92 Aligned_cols=259 Identities=17% Similarity=0.198 Sum_probs=196.9
Q ss_pred CeEEEEeCCCC-ceeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcE--EEE----EccCCCCeEEEEEc
Q 002881 37 GTVCIWNYQSQ-TMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDK--VKV----FEAHTDYIRCVAVH 108 (871)
Q Consensus 37 g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~i~~i~~~ 108 (871)
+.+.||++... .+...+. ...+|+|+.|+|. ...++.|+.+|+|.+||+..+.. ... ...|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 3333333 5678999999995 56677778899999999987654 222 23689999999998
Q ss_pred CCCC--EEEEEECCCeEEEEECCCCceEEEE-----ee------cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 109 PTLP--YVLSSSDDMLIKLWDWEKGWMCTQI-----FE------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 109 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~-----~~------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
.+.. -+++++.||.|..|+++.-...... .. .....++++.|.|.+.+.|++|+.+|.|..-+-.+.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 7544 4999999999999988743221111 11 123458999999989999999999999987443332
Q ss_pred C--------CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC-CCceEEEecCcccCeEEEEEcCCCC-EEE
Q 002881 176 D--------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTHNVSAVCFHPELP-III 245 (871)
Q Consensus 176 ~--------~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~i~~~p~~~-~l~ 245 (871)
+ .......|.++|.++.++|-+.. .+++++ |.++++|+.. ...++..+..+...+++++|||..+ .|+
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k-~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPK-NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccc-eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 2 23355678899999999999886 444444 9999999987 6677777777788899999999876 667
Q ss_pred EEECCCcEEEEeCCCCe--EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 246 TGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
++..||.+.+||+.... +..+..........+.|++.|+.|++|...|.+.++
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 77789999999986443 444444445667788899999999999999999886
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.6e-18 Score=182.43 Aligned_cols=287 Identities=18% Similarity=0.279 Sum_probs=219.8
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeec---CCCEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT---ELPVRSAKFVA--RKQWVVAGADDMFIRVY 84 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~iw 84 (871)
.+++...+...+.|||-.+.++++...-.|+|||.+.++....|..+ ...|+.+.+.. |...+.+|+.||.|+||
T Consensus 1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 34455556788999999999999988889999999999988877754 45789999876 45689999999999999
Q ss_pred ECC-C----CcEEEEEcc-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEec
Q 002881 85 NYN-T----MDKVKVFEA-------HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 85 ~~~-~----~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 152 (871)
+-- + .+.+..+.+ ..+.=.-++|.....+|+++|+-..|+|||......+..+..+....|+++.-+-
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence 632 2 223333221 1111244688887778888888899999999987566666666677788887766
Q ss_pred CCCCEEEEEECCCcEEEEECCCCC---CeEEEecCCCC--eeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce--EEEe
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTL 225 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~ 225 (871)
..++.+++|..||.|++||.+... .+...+.|... |..+.+.+.|-+ -+++|+.+|.|++||++.... ..++
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCccccccee
Confidence 568999999999999999998654 34556677666 889999887765 699999999999999997422 2222
Q ss_pred cCcc--c-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-------CCccEEEEEEeeCCCeEEEEEcCCeE
Q 002881 226 EGHT--H-NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-------GLERVWAIGYMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 226 ~~~~--~-~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~g~~dg~i 295 (871)
..|- + .++++..|++.+++++|+. +.|+||++. |+.+..+.. ..+.+.+++|+|.--.+|+|+.|.+|
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 2222 3 5999999999999999998 899999976 444443332 23568899999999999999999999
Q ss_pred EEec
Q 002881 296 MVKI 299 (871)
Q Consensus 296 ~i~~ 299 (871)
.++.
T Consensus 1376 ~iYs 1379 (1387)
T KOG1517|consen 1376 SIYS 1379 (1387)
T ss_pred EEee
Confidence 8863
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=5.1e-18 Score=157.35 Aligned_cols=268 Identities=23% Similarity=0.332 Sum_probs=199.4
Q ss_pred CEEEEEEc----CCeEEEEeCCCCc--e-eEEeeecCCCEEEEEEeCCCCEEE-EEeCC-------CeEEEEECCCC---
Q 002881 28 PWILASLY----SGTVCIWNYQSQT--M-AKSFEVTELPVRSAKFVARKQWVV-AGADD-------MFIRVYNYNTM--- 89 (871)
Q Consensus 28 ~~la~~~~----dg~v~iwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-------g~i~iw~~~~~--- 89 (871)
-.+++|.. ++.|.+.+++.+. + .+.|..|.+.|..++-+|..+.|+ ++..+ ..+.||.+...
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence 35666653 6788888776542 2 245666789999999999665554 44331 25779987532
Q ss_pred ------cEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe-----ecCCcceEEEEEec-CCCC
Q 002881 90 ------DKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFNP-KDTN 156 (871)
Q Consensus 90 ------~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~p-~~~~ 156 (871)
+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+......+ ..+....++-+|+| .+++
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 2233333 4556899999999998888766 7799999998774433222 23566788999999 5566
Q ss_pred EEEEEECCCcEEEEECCCCCCeEEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccCeEE
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSA 234 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~ 234 (871)
.+++ ..|+++..||+++......+ ..|...+..+.|+|+... +|+++++||.|++||.+. ..+++.+.+|...|++
T Consensus 186 qv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 186 QVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred eEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 6665 45899999999988776655 467788999999998765 899999999999999985 5679999999999999
Q ss_pred EEEcCCC-CEEEEEECCCcEEEEeCCCC-----------------------------eEEEEEecCCccEEEEEEeeCCC
Q 002881 235 VCFHPEL-PIIITGSEDGTVRIWHATTY-----------------------------RLENTLNYGLERVWAIGYMKSSR 284 (871)
Q Consensus 235 i~~~p~~-~~l~~~~~dg~v~iwd~~~~-----------------------------~~~~~~~~~~~~i~~i~~~~~~~ 284 (871)
+.|+|.. +++++||.|..|.+|....- ..+.++..|.+.|++++|+.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 9999955 58889999999999954310 12335666778999999998766
Q ss_pred eE-EEEEcCCeEEEe
Q 002881 285 RI-VIGYDEGTIMVK 298 (871)
Q Consensus 285 ~l-~~g~~dg~i~i~ 298 (871)
.+ |+-+.||.++|.
T Consensus 344 WiFASLSYDGRviIs 358 (370)
T KOG1007|consen 344 WIFASLSYDGRVIIS 358 (370)
T ss_pred eeEEEeccCceEEee
Confidence 65 456888888773
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.8e-17 Score=159.79 Aligned_cols=293 Identities=11% Similarity=0.153 Sum_probs=223.5
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC------CceeEEee-ecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMF 80 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 80 (871)
++.+.+|.+.|.++.||.++++|++|+.|-.+++|+++. .+++.... .|.+.|.|++|.....++++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 466778999999999999999999999999999999864 23444333 35689999999999999999999999
Q ss_pred EEEEECCCCcEEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE--EeecCCcceEEEEEecCCCC
Q 002881 81 IRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDTN 156 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~ 156 (871)
|...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||.+....... ..........++.|+|..+.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999888777652 335899999999999999999999999999986532222 22234456788999998889
Q ss_pred EEEEEECCCcEEEEECCCCCC-eEEE------ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-EEEecCc
Q 002881 157 TFASASLDRTIKIWNLGSPDP-NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGH 228 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~-~~~~------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~ 228 (871)
++++.+..+-+.+||.+.... +... ......-..+.|+|+|++ +++--....-.+||+.+.++ +..+. |
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q--~msiRR~~~P~~~D~~S~R~~V~k~D-~ 285 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ--FMSIRRGKCPLYFDFISQRCFVLKSD-H 285 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe--ehhhhccCCCEEeeeecccceeEecc-C
Confidence 999999999999999986542 2111 111122246789999885 55554455556788876544 33333 2
Q ss_pred c-------cCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------C-------------eEEEEEecCCccEEEEE
Q 002881 229 T-------HNVSAVCFHPELPIIITGSEDGTVRIWHATT----------Y-------------RLENTLNYGLERVWAIG 278 (871)
Q Consensus 229 ~-------~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~----------~-------------~~~~~~~~~~~~i~~i~ 278 (871)
. ..+.+++|..+.. +++|+.+-.|++|.+.. | +....+.+|..-+..+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 2 2366788887754 99999999999997631 1 12356778888889999
Q ss_pred EeeCCCeEEEEEcCCeEEEecCCCcc
Q 002881 279 YMKSSRRIVIGYDEGTIMVKIGREEP 304 (871)
Q Consensus 279 ~~~~~~~l~~g~~dg~i~i~~~~~~~ 304 (871)
|+|....|++.+-+..+.+|.....|
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred ecCCcceEeccchhhheeccccccCC
Confidence 99999999999999999999766554
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=158.56 Aligned_cols=285 Identities=16% Similarity=0.171 Sum_probs=205.2
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 84 (871)
+....+.+|.+.|+++.|..++. |.+|...|.|++|++.+......++ .+...|+.+.-.|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 34455669999999999999886 8999999999999999998888888 56788999998888 558888899999999
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcC-----CCC---E-EEEEECCC-eEEEEECCCCceEEEEe----ecCCcceEEEEE
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHP-----TLP---Y-VLSSSDDM-LIKLWDWEKGWMCTQIF----EGHSHYVMQVTF 150 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~-----~~~---~-l~~~~~dg-~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~ 150 (871)
++.-+..+.. |+-.+.++-|.+ +++ . ++.-+... .+.+-|.... ....+. .+..+.+++..|
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~-tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT-TQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc-ceeEccCchhccccCceeeeec
Confidence 9876544332 222333343432 111 1 11111100 0111221111 111111 123456788776
Q ss_pred ecCCCC--EEEEEECCCcEEEEECCCCCCe----------EEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC
Q 002881 151 NPKDTN--TFASASLDRTIKIWNLGSPDPN----------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 151 ~p~~~~--~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
....+. .+++|.++|.+.+||+.++..+ .....|..++.++.+.+..+ .=++|+.+..+..|++..
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--RGISGGADDKLVMYSLNH 236 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--CCcCCCccccceeeeecc
Confidence 543333 4677889999999999887433 23346888999999986554 356777778899998864
Q ss_pred C--ce--EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCe
Q 002881 219 K--SC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 219 ~--~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
. .+ -..+....-.|..+..-||+++++++|.|+.||+|+.++.+.+..+..|...|.+++|+|+...+|.++.|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 2 22 1122223445888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 002881 295 IMVK 298 (871)
Q Consensus 295 i~i~ 298 (871)
|.+|
T Consensus 317 ISLW 320 (323)
T KOG0322|consen 317 ISLW 320 (323)
T ss_pred EEee
Confidence 9998
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=5.6e-17 Score=150.76 Aligned_cols=274 Identities=15% Similarity=0.225 Sum_probs=200.7
Q ss_pred CEEEEEEcC--C-CCEEEEEEc----CCeEEEEeC--CCCceeEEe-eecCCCEEEEEEeCCC-----CEEEEEeCCCeE
Q 002881 17 RVKSVDLHP--S-EPWILASLY----SGTVCIWNY--QSQTMAKSF-EVTELPVRSAKFVARK-----QWVVAGADDMFI 81 (871)
Q Consensus 17 ~v~~i~~s~--~-~~~la~~~~----dg~v~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i 81 (871)
.+.++.|+. + +-+||.|+. ++.|.|-.+ ++++.+..- -.|.-|++.+.|.|+. +.||+++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 578899984 2 347888875 566777654 344444322 1478899999999986 3455554 479
Q ss_pred EEEECCCC--cEE--EEE-----ccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCc--eEEEEeecCCcceEEEE
Q 002881 82 RVYNYNTM--DKV--KVF-----EAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVT 149 (871)
Q Consensus 82 ~iw~~~~~--~~~--~~~-----~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~ 149 (871)
++|.+... +.. ..+ ..+..++++..|+.- -++|.++|-|-+..|||++++. .+...+-.|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99998732 111 111 245678999999974 5678899999999999999862 35666778999999999
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCCCeEEEe---cCCCCeeEEEEeecCCcCEEEEEe-CCCeEEEEECCC-CceEEE
Q 002881 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQT-KSCVQT 224 (871)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~ 224 (871)
|...+.+.|++.+.||.+++||++..+....+- ....+...++|++.... ++++-. ....|.+.|++. ..++..
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHhhhhcCCceEEEEEecCCCcceeh
Confidence 998777899999999999999998765433332 12456778888876544 666654 446799999986 457889
Q ss_pred ecCcccCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeE------EEEEecCCccEEEEEEee-CCCeEEEEEcCCe
Q 002881 225 LEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRL------ENTLNYGLERVWAIGYMK-SSRRIVIGYDEGT 294 (871)
Q Consensus 225 ~~~~~~~v~~i~~~p~~-~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~i~~i~~~~-~~~~l~~g~~dg~ 294 (871)
+++|.+.|.+++|.|.. ..|+++|.|..+-+||+...-. +..+. ..+.|..+.|++ .+..+++++.+..
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kkl 359 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKL 359 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCee
Confidence 99999999999999965 5899999999999999874321 22222 346799999996 4677877766543
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.1e-17 Score=145.44 Aligned_cols=268 Identities=16% Similarity=0.286 Sum_probs=194.9
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC----------CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQS----------QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
..|.+-+|+|.+++|++|..+|.|.+..+.+ ...+-..+.|++++..++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4577778999999999999999999998753 22344557899999999998 34566665 49999998
Q ss_pred CCCCcE------EEEE--ccCC-----CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEec
Q 002881 86 YNTMDK------VKVF--EAHT-----DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 86 ~~~~~~------~~~~--~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 152 (871)
++.... .... .-|. -.|..|...|..+-+++++.|+.++-||++++ .+...+.+|+.+|.++.-..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecc
Confidence 764322 1111 1122 35889999998888888889999999999999 88999999999999998854
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCeEEEecCCC----------CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceE
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK----------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 222 (871)
....+++|+.||++++||.++++.+..+...+. -|-+++. +.+ .+++|+ ...+.+|++++.++.
T Consensus 167 -~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed--WlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 167 -ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED--WLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred -cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc--eEEecC-CCceeEEeccCCCce
Confidence 567899999999999999999988877653322 1334433 333 566655 568999999998887
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCC-CeEEEEEcCCeEEE
Q 002881 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMV 297 (871)
Q Consensus 223 ~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~g~~dg~i~i 297 (871)
..+. ...++..+.|..+ .++++++.+.|.-|.+. |.+....+......++.+|+... +.|.+++....+.+
T Consensus 241 ~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 241 CVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred EEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 7765 3456777788764 68888888899999865 66555555555555666665432 33444454444444
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.5e-18 Score=174.27 Aligned_cols=246 Identities=17% Similarity=0.257 Sum_probs=193.0
Q ss_pred EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 002881 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (871)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 122 (871)
.++..|...++.+.|.|....|++++.||.|.+|+++. -+++.+|.+|.++|.|+++.+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 35567888999999999999999999999999999932 2567889999999999999999999999999999
Q ss_pred EEEEECCCC---------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec--CCCCeeEE
Q 002881 123 IKLWDWEKG---------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCV 191 (871)
Q Consensus 123 i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~i 191 (871)
|+.|++..+ ......+.+|...|+.+++++ ....|++++.||+++.|......+ .++.. ..+...++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 999965421 244567889999999999998 677899999999999999877665 22221 22233445
Q ss_pred EEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC-------cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE
Q 002881 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (871)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (871)
++-..... ..++...-+.-.+++......+..+.. ....+..+.++|.+.+.+++.+|+.|+++|..++.++
T Consensus 446 d~~ss~~a-~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 446 DRTSSRPA-HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred eeccchhH-hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 54332211 233333344444445444444443322 1234778899999999999999999999999999999
Q ss_pred EEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 265 NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 265 ~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
.....|...++++++.|+|.+|++|+.||.+.+|.
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 99999999999999999999999999999999983
No 189
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.78 E-value=1.5e-14 Score=160.16 Aligned_cols=271 Identities=10% Similarity=0.134 Sum_probs=161.9
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
+.|.++.|..+...+.++...|.|.+-|.++..... ...-+..|.+++||||+++++..+..+++.+-.. +..++...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK 146 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence 589999999999999999999999999987765432 2334678999999999999999998888876543 22322211
Q ss_pred cc-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE-----ECCC
Q 002881 96 EA-----HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA-----SLDR 165 (871)
Q Consensus 96 ~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-----~~dg 165 (871)
.- ..+....+-|-.....+ -|+ .|.....+.....+.......+. .=++++|-- ++.+|++. ...+
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRg-Dg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDD-HKTSISWRG-DGEYFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhcc-CCceEEEcc-CCcEEEEEEEeccCCce
Confidence 11 11122233343322111 111 11111111111100001001122 235789987 78888883 2237
Q ss_pred cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEE---eCCCeEEEEECCC---CceEEEecCcccCeEEEEEcC
Q 002881 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG---SDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~---~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~i~~~p 239 (871)
.|++||-+ +.....-....+.-.+++|-|.|. .+++- ++++.|.+|.-+. |.....+......+..++|+.
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs--~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS--LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCC--eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 89999976 433333333344456899999876 56654 3456799998542 222222333344589999999
Q ss_pred CCCEEEE---EECCCcEEEEeCCCCe--EEEEEecCCccEEEEEEeeC-CCeEEEEEcCCeEEE
Q 002881 240 ELPIIIT---GSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMV 297 (871)
Q Consensus 240 ~~~~l~~---~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~i~~~~~-~~~l~~g~~dg~i~i 297 (871)
++..|++ ......|++|.+.++. +.+.+..+.... +.|+|. ...+.+-..+|...+
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 9999887 5555569999988876 333444443333 788885 334444446666555
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.6e-15 Score=168.76 Aligned_cols=289 Identities=28% Similarity=0.482 Sum_probs=231.2
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCC-EEEEEeCCCeEEEE
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVY 84 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw 84 (871)
....+..|...|.+++|+|++.++++++. ++.+++|+..++..+..+..|...|.+++|+|++. .+++++.|+.|++|
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 44567789999999999999998888875 99999999998888888998999999999999998 55555899999999
Q ss_pred ECCCCcEEE-EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 85 NYNTMDKVK-VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
+..++.... .+..|.... ...|+|++.++++++.|+.+++|+.............|...+.++.|+| ++..+++++.
T Consensus 227 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 304 (466)
T COG2319 227 DLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSS 304 (466)
T ss_pred ECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeC
Confidence 988888887 688888875 4489999989999999999999999876442333367888999999999 7777777999
Q ss_pred CCcEEEEECCCCCCeEEEe--cCCCCeeEEEEeecCCcCEEEEE-eCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 002881 164 DRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITG-SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~ 240 (871)
|+.+.+||........... .|...+..+.+ +.. ...++.+ ..++.+.+|+............. ..+..+.+.+
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 380 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP- 380 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-
Confidence 9999999998877666555 67777889988 532 1245555 67889999999877633333322 2288899988
Q ss_pred CCEEEE-EECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 241 LPIIIT-GSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 241 ~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
...+.. +..++.+.+|+................+....+++++..++.++.++.+..|...
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 544444 6889999999998877666555443678899999999999999999999887433
No 191
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.76 E-value=7.6e-12 Score=145.85 Aligned_cols=385 Identities=15% Similarity=0.203 Sum_probs=228.1
Q ss_pred CCEEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCc---eeEEee-----ecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYS----GTVCIWNYQSQT---MAKSFE-----VTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~d----g~v~iwd~~~~~---~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
..+...+|.+....+.++... ..|.+....... .+..+. ...+.|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 467888888877655544432 234444433322 222332 23467999999999999999999999999
Q ss_pred E----ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---------------------c--eEEE
Q 002881 84 Y----NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---------------------W--MCTQ 136 (871)
Q Consensus 84 w----~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~---------------------~--~~~~ 136 (871)
. +..+. .+.....-...|.+++||||+..|+..+.+|++.+.+-.=. | +..+
T Consensus 102 ~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 9 54433 23333344668999999999999999999998888752200 0 0000
Q ss_pred ------------------------EeecCCcceEEEEEecCCCCEEEEEEC---C---CcEEEEECCCCCCeEEEecCCC
Q 002881 137 ------------------------IFEGHSHYVMQVTFNPKDTNTFASASL---D---RTIKIWNLGSPDPNFTLDAHQK 186 (871)
Q Consensus 137 ------------------------~~~~~~~~v~~~~~~p~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~ 186 (871)
.+. +...-..++|-. |+.+|++.+. . +.++||+-+ |....+.+.-.+
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g 257 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG 257 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC
Confidence 001 222456788998 8999998875 2 579999965 443333333334
Q ss_pred CeeEEEEeecCCcCEEEEEeC---CCeEEEEECCCCceEEEe----cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 187 GVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTL----EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~----~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
--.+++|-|.|+ +|++... ...|.+|.- +|-.-..+ ......|..+.|++++..|+..-.| .|.+|...
T Consensus 258 Le~~l~WrPsG~--lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~ 333 (928)
T PF04762_consen 258 LEGALSWRPSGN--LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRS 333 (928)
T ss_pred ccCCccCCCCCC--EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEee
Confidence 446789999997 5666543 356777874 34332222 2345679999999999999998866 49999998
Q ss_pred CCe--EEEEEecCC-ccEEEEEEeeC-CCeEEEEEcCCeEEEec----CCCcceEEEeCCCcEEEEeecceEEEEEeecC
Q 002881 260 TYR--LENTLNYGL-ERVWAIGYMKS-SRRIVIGYDEGTIMVKI----GREEPVASMDNSGKIIWAKHNEIQTVNIKSVG 331 (871)
Q Consensus 260 ~~~--~~~~~~~~~-~~i~~i~~~~~-~~~l~~g~~dg~i~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (871)
++. +.+.+.... ..+..+.|+|. ...|.+.+.+|.+.... ....+...-...+.+...-+..+.+..+....
T Consensus 334 NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~ 413 (928)
T PF04762_consen 334 NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV 413 (928)
T ss_pred CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccC
Confidence 876 333444332 34555999996 45577788767765521 00000000000111111112222222211100
Q ss_pred cceeccCCCeeeeeeeecCccccCCceEEECCCCC-EEEEEcCCcEEEEEeecccc-----------------------c
Q 002881 332 ADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-FVVVCGDGEYIIYTALAWRN-----------------------R 387 (871)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~lav~~~~~~~i~~~~~~~~-----------------------~ 387 (871)
-+-|+...++. ....+..++|++++. +.++..+|.+.+|....... .
T Consensus 414 --------VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (928)
T PF04762_consen 414 --------VPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSEL 484 (928)
T ss_pred --------CCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccc
Confidence 00111112211 234678999999987 45555689899997432110 0
Q ss_pred CcCceeEEEEecCCcEEEEecC----CeEEEeec
Q 002881 388 SFGSALEFVWSSDGEYAVRESS----SKIKIFSK 417 (871)
Q Consensus 388 ~~~~~~~~~~s~~~~~~~~~~~----~~i~i~~~ 417 (871)
.......++|..++..++.... ..+.+++.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 485 PLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred ccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 1234577888877766554442 45666654
No 192
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=3.6e-17 Score=154.24 Aligned_cols=233 Identities=21% Similarity=0.324 Sum_probs=185.1
Q ss_pred CCCEEEEEEc-------CCCCEEEEEEcCCeEEEEeCCCCceeEEeee--cCC---CEEEEEEeCCCCEEEEEeCCCeEE
Q 002881 15 SERVKSVDLH-------PSEPWILASLYSGTVCIWNYQSQTMAKSFEV--TEL---PVRSAKFVARKQWVVAGADDMFIR 82 (871)
Q Consensus 15 ~~~v~~i~~s-------~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~ 82 (871)
.+.|...+|- |+..++|+.+.+.-|++||.-+|++..++.. |.. .-.+++|+|||..|++|. ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 4567777774 6777899999999999999999998887764 322 457899999999998874 57899
Q ss_pred EEEC-CCCcEEEEE-------ccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecC
Q 002881 83 VYNY-NTMDKVKVF-------EAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (871)
Q Consensus 83 iw~~-~~~~~~~~~-------~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 153 (871)
++|+ +.|+..... .+..+.|.|++|+|... .+++|+....+-||..... .....+.+|.+.|+.+.|.+
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~e- 260 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCE- 260 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEecc-
Confidence 9998 555443222 13467899999999655 8899999999999998876 67778889999999999999
Q ss_pred CCCEEEEEEC-CCcEEEEECCCC-CCeEEEecCCC-CeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcc
Q 002881 154 DTNTFASASL-DRTIKIWNLGSP-DPNFTLDAHQK-GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHT 229 (871)
Q Consensus 154 ~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~-~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~ 229 (871)
+++.|++|.. |-.|..||++.. .++..+..|.. .-..|-|.-+..+.+|++|+.+|.|++||+++ +..+..+..+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 6777777665 788999999864 45566665554 33455565555555999999999999999998 67778888899
Q ss_pred cCeEEEEEcCCCCEEEEEECC
Q 002881 230 HNVSAVCFHPELPIIITGSED 250 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~d 250 (871)
..+..++++|--+++++++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 999999999998888888743
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=7.3e-17 Score=152.35 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=192.4
Q ss_pred eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002881 53 FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD---KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (871)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~ 129 (871)
+.....+|+|.+|++|+..+|++.....|.||.....+ ..+++..|...|++++|+|..+.|++|+.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33346789999999999999999999999999877554 678889999999999999999999999999999999984
Q ss_pred CC--ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCe----EEEecCCCCeeEEEEeecCCcCEEE
Q 002881 130 KG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN----FTLDAHQKGVNCVDYFTGGDKPYLI 203 (871)
Q Consensus 130 ~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~i~~~~~~~~~~l~ 203 (871)
.+ +.....+..++...+++.|+| .++.|++|+.-..|.||-.+...-- ..-..+...|.+++|+|++- +++
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--Lla 162 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--LLA 162 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--eec
Confidence 33 344556677889999999999 8999999999999999988654321 12245677899999999876 799
Q ss_pred EEeCCCeEEEEECC-----C-------------CceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EE
Q 002881 204 TGSDDHTAKVWDYQ-----T-------------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LE 264 (871)
Q Consensus 204 ~~~~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~-~~ 264 (871)
+|+.|+..++|+.- . |+.+..+....+.+..+.|+|+|..|+-.+.|+++.+-|..... .+
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 99999999999742 1 22233343456789999999999999999999999999976554 34
Q ss_pred EEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 265 NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 265 ~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
..+....-+..++.|-.+...+++|.+-+-+.+
T Consensus 243 ~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred cchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence 444444467788888877776666665455443
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.6e-17 Score=162.29 Aligned_cols=212 Identities=17% Similarity=0.280 Sum_probs=161.9
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee-ecCCCEEEEEEeC--CCCEEEEEeCCCe
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVA--RKQWVVAGADDMF 80 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~ 80 (871)
++.+...|+||++.|.|++|+.+|.+|++|+.|-.+.|||.-..++++.+. +|...|.++.|-| +...+++|..|..
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 456778899999999999999999999999999999999998888887765 6899999999999 4567889999999
Q ss_pred EEEEECCCC----------cEEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEeec---------
Q 002881 81 IRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEG--------- 140 (871)
Q Consensus 81 i~iw~~~~~----------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------- 140 (871)
|+++|+... .....+..|...|..|+..|++ ..+.++++||+|+-+|++....+......
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999999741 2344556789999999999998 57889999999999999875333222111
Q ss_pred CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC------------------CeEEEe-cCC-----------CCeeE
Q 002881 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD------------------PNFTLD-AHQ-----------KGVNC 190 (871)
Q Consensus 141 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~-~~~-----------~~i~~ 190 (871)
.--...|+..+|..+.+|++|+.|-..++||.+... ++..+. +|- ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 123467899999999999999999999999943210 111111 111 12456
Q ss_pred EEEeecCCcCEEEEEeCCCeEEEEECC
Q 002881 191 VDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 191 i~~~~~~~~~~l~~~~~dg~i~v~d~~ 217 (871)
+.|+|+|.. +++.-..-.|+++|+.
T Consensus 279 vtfnpNGtE--lLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 279 VTFNPNGTE--LLVSWGGEHVYLFDVN 303 (758)
T ss_pred EEECCCCcE--EEEeeCCeEEEEEeec
Confidence 778898875 4444445578888873
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.6e-18 Score=167.45 Aligned_cols=295 Identities=19% Similarity=0.263 Sum_probs=234.2
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee-ecCCCEEEEEEeCC--CCEEEEEeCCCe
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVAR--KQWVVAGADDMF 80 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~ 80 (871)
++.+..+|.+|.+.|..+.|+..|..|++|+.|..|.+||+..+.....+. +|...|....|.|. ...|++++.||+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 567888999999999999999999999999999999999999998877665 58888888889884 467999999999
Q ss_pred EEEEECCC-CcE--EEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEE--EeecCCc---ceEEEEEe
Q 002881 81 IRVYNYNT-MDK--VKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSH---YVMQVTFN 151 (871)
Q Consensus 81 i~iw~~~~-~~~--~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~---~v~~~~~~ 151 (871)
+++=.+.. +.. ...+..|.++|.-++.-|+.+ -|.+++.|+.+.-.|++.+..... ....+.. ....++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99877643 332 344568999999999999765 578999999999999987632221 1122333 56889999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCC------eEEE------ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSPDP------NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT- 218 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~- 218 (871)
|...+.+++++.|..+++||.+.-.. +.++ ......|+|+.|+.++.. ++++..|-.|+++.-..
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE--lLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE--LLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc--eeeeecccceEEeccccc
Confidence 98888999999999999999865321 1222 234567999999977764 77778888899995432
Q ss_pred -C----------ceEEE-ecCcccC--eEEEE-EcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCC
Q 002881 219 -K----------SCVQT-LEGHTHN--VSAVC-FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (871)
Q Consensus 219 -~----------~~~~~-~~~~~~~--v~~i~-~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 283 (871)
| ..+.. +++|.+. |..+- |-|...++++||.-|.|.||+-.+++.+..+.....-|.|+.-+|--
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 2 11222 5677553 66666 46788899999999999999999999988888877789999999999
Q ss_pred CeEEEEEcCCeEEEecC
Q 002881 284 RRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 284 ~~l~~g~~dg~i~i~~~ 300 (871)
..||+.+-|.-|.||..
T Consensus 449 PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTP 465 (559)
T ss_pred chhhccCCccceeeecC
Confidence 99999999999999965
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=9.1e-17 Score=172.53 Aligned_cols=244 Identities=17% Similarity=0.242 Sum_probs=186.9
Q ss_pred CCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCce--eEE----eeecCCCEEEEEEeCCCC--EEEEEeCCCeEEEE
Q 002881 14 RSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTM--AKS----FEVTELPVRSAKFVARKQ--WVVAGADDMFIRVY 84 (871)
Q Consensus 14 h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw 84 (871)
-...|+|+.|+|..+ +++.|+++|.|.+||+..+.. ... ...|..+|+.+.|..+.. -+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 356799999999655 666778899999999987755 222 225788999999987544 49999999999999
Q ss_pred ECCCCcE-EE-----EEc------cCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC---c----eEEEEeecCCcc
Q 002881 85 NYNTMDK-VK-----VFE------AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKG---W----MCTQIFEGHSHY 144 (871)
Q Consensus 85 ~~~~~~~-~~-----~~~------~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~---~----~~~~~~~~~~~~ 144 (871)
+++.... .. ... .....+++++|.+.. ..+++|+++|.|.--+.... . +....+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764322 10 001 123358899999864 46888999998887443322 1 113355678899
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEECC-CCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC--Cce
Q 002881 145 VMQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT--KSC 221 (871)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~ 221 (871)
|+++.++|-....|++++ |.++++|+.. ...++..+..+...+++++|||.... +++++..+|.+.+||+.. ..+
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa-vF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA-VFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-EEEEEcCCCceehhhhhccccCC
Confidence 999999996666666666 9999999988 67778888878888999999998654 888999999999999974 345
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 222 ~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
+.+...+....+.+.|+++|+.|++|...|++++|++.
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 55555556667788999999999999999999999985
No 197
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.9e-14 Score=148.83 Aligned_cols=366 Identities=15% Similarity=0.204 Sum_probs=253.3
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCC------------CEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCC---
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSE------------PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR--- 68 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~------------~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--- 68 (871)
.++....++-|+..|+.+.|.|-. ..||++...|.|.+||...+..+..++.|..++..++|-+.
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 456778888999999999998731 25777888999999999999988889989999999999873
Q ss_pred C-CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC------ceEEEEeec
Q 002881 69 K-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKG------WMCTQIFEG 140 (871)
Q Consensus 69 ~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~ 140 (871)
. ..|+.-.....|.+||..+|++............|+.+.| +.+.+..-+..|.+.+-+.-.. .+..++-..
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence 3 5677777788999999999999988887777888899998 4556666667777777764321 122222222
Q ss_pred CCc-------------------------ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEee
Q 002881 141 HSH-------------------------YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT 195 (871)
Q Consensus 141 ~~~-------------------------~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 195 (871)
|.. +...++|+|.-.+.++. ...+.+.++|++-..++....-..+.+.-+.|.|
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vlP 282 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP 282 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence 221 11245678844454444 4567899999988888887777778888899999
Q ss_pred cCCcCEEEEEeCCCeEEEEECCC----------------CceEE---Ee-------------------------------
Q 002881 196 GGDKPYLITGSDDHTAKVWDYQT----------------KSCVQ---TL------------------------------- 225 (871)
Q Consensus 196 ~~~~~~l~~~~~dg~i~v~d~~~----------------~~~~~---~~------------------------------- 225 (871)
+++...+++...||.+.+|-.+. +.... .+
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~ 362 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQ 362 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHh
Confidence 99988999999999999996432 11100 00
Q ss_pred -----------------------------------------cCcccCeEEEEEcC-----------CC-------CEEEE
Q 002881 226 -----------------------------------------EGHTHNVSAVCFHP-----------EL-------PIIIT 246 (871)
Q Consensus 226 -----------------------------------------~~~~~~v~~i~~~p-----------~~-------~~l~~ 246 (871)
.+|....++...+| .+ ++++.
T Consensus 363 l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAv 442 (1062)
T KOG1912|consen 363 LSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAV 442 (1062)
T ss_pred hhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEe
Confidence 01222222222222 11 37889
Q ss_pred EECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEE
Q 002881 247 GSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVN 326 (871)
Q Consensus 247 ~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (871)
|...|+|.++|+.++.....+..|...|.++.|....+.+-.++..-.-. .| ...+++.+.+
T Consensus 443 GT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~--------------sg----~vrN~l~vtd 504 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSA--------------SG----GVRNDLVVTD 504 (1062)
T ss_pred ecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecccccc--------------cc----ceeeeEEEEE
Confidence 99999999999999999899999999999999988777666555321110 00 0112333333
Q ss_pred EeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCcCceeEEEEe
Q 002881 327 IKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWS 398 (871)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s 398 (871)
+ .+|....++-.. +..+.+++.+..|..|++|++.- +.-+.+|+.+..+ ...+..++.+.|+
T Consensus 505 L---------rtGlsk~fR~l~-~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 505 L---------RTGLSKRFRGLQ-KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred c---------ccccccccccCC-CCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 2 333333222111 44556788999999999999887 6667788775543 3344557888888
No 198
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=3.3e-16 Score=148.08 Aligned_cols=308 Identities=16% Similarity=0.258 Sum_probs=203.6
Q ss_pred CCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCcEEE
Q 002881 16 ERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~ 93 (871)
+.|.-+.|..|.-+++++.+ ++.|.+|++..-+-...+.....++..+.|||||+.|.. ..-+-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 56788999999988877654 889999999888877788878889999999999976665 4558899999999865543
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
. +.....+..++|+|+|++.+.++.-.....+++. +.+.+...+...+-..+.+.|+| +++.+++ ||
T Consensus 129 ~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laV---------wd 197 (447)
T KOG4497|consen 129 L-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAV---------WD 197 (447)
T ss_pred e-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEE---------ec
Confidence 3 3234456889999999999888763221111111 11233333333444567778888 5655543 44
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc-------------------------------
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS------------------------------- 220 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------------------------------- 220 (871)
.--.-.+... ...-++..+.|+|.+. ++++|+.|+.+++.+--+.+
T Consensus 198 ~~Leykv~aY-e~~lG~k~v~wsP~~q--flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~ 274 (447)
T KOG4497|consen 198 NVLEYKVYAY-ERGLGLKFVEWSPCNQ--FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH 274 (447)
T ss_pred chhhheeeee-eeccceeEEEeccccc--eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence 2111111111 1234567778887766 78888888777764421100
Q ss_pred -----------------------------eEEEec------CcccCeEEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeE
Q 002881 221 -----------------------------CVQTLE------GHTHNVSAVCFHPELPIIITGSE--DGTVRIWHATTYRL 263 (871)
Q Consensus 221 -----------------------------~~~~~~------~~~~~v~~i~~~p~~~~l~~~~~--dg~v~iwd~~~~~~ 263 (871)
.+..++ .....+.-++|++|..++++-.. -+.+-+||++..++
T Consensus 275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l 354 (447)
T KOG4497|consen 275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL 354 (447)
T ss_pred cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh
Confidence 001111 12334677899999988887643 35699999987665
Q ss_pred EEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeee
Q 002881 264 ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLP 343 (871)
Q Consensus 264 ~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (871)
...+. ...+|....|.|....|++++....+++|......++....
T Consensus 355 ~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--------------------------------- 400 (447)
T KOG4497|consen 355 HAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--------------------------------- 400 (447)
T ss_pred hhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC---------------------------------
Confidence 44443 34789999999999999999988888888433322222111
Q ss_pred eeeeecCccccCCceEEECCCCCEEEEEcCCcEEEE
Q 002881 344 LAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIY 379 (871)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~ 379 (871)
....++.+.|..+|.+++.++.+.+.+-
T Consensus 401 --------~GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 401 --------KGFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred --------CCceeeeEEecCCCcEEEEEcCCceEEE
Confidence 1134568999999999999987766553
No 199
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.9e-16 Score=153.37 Aligned_cols=227 Identities=14% Similarity=0.228 Sum_probs=169.4
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCC-------ceeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCe
Q 002881 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMF 80 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 80 (871)
.+.||+++|..++|+| +...+|+|+.|.+|.||.+..+ +.+..+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999999 4557889999999999998654 456778899999999999996 467889999999
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCc-ceEEEEEecCCCCEEE
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH-YVMQVTFNPKDTNTFA 159 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~ 159 (871)
|.+||+.||+.+.++. |.+.|.++.|+.+|.+|++++.|..|+|||.+++ .+...-.+|.+ .-..+.|-. ++.++.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~-~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLA-SGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEec-cCceee
Confidence 9999999999988888 9999999999999999999999999999999998 44444456643 334455665 566555
Q ss_pred EEE---CCCcEEEEECCCCCCeEEEe--cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-EEEecC--cccC
Q 002881 160 SAS---LDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEG--HTHN 231 (871)
Q Consensus 160 ~~~---~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~--~~~~ 231 (871)
+|. .++.+.+||..+-+....+. ....+|.---|.++.+ .+.++|-.|+.|+-|.+....+ ++-+.. ...+
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~-ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ep 311 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS-IVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEP 311 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC-EEEEEecCCcceEEEEecCCCceeEEecccccCCc
Confidence 543 36789999986644322221 2334555444555544 3667788899999999886553 222221 2234
Q ss_pred eEEEEEcCC
Q 002881 232 VSAVCFHPE 240 (871)
Q Consensus 232 v~~i~~~p~ 240 (871)
-..+.+-|.
T Consensus 312 QRG~g~mPK 320 (472)
T KOG0303|consen 312 QRGMGFMPK 320 (472)
T ss_pred ccccccccc
Confidence 455666664
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=2.8e-16 Score=146.19 Aligned_cols=238 Identities=18% Similarity=0.229 Sum_probs=182.8
Q ss_pred cCCCCEEEEEEcCCCC-----EEEEEEcCCeEEEEeCCCCcee----EEe-----eecCCCEEEEEEeC-CCCEEEEEeC
Q 002881 13 QRSERVKSVDLHPSEP-----WILASLYSGTVCIWNYQSQTMA----KSF-----EVTELPVRSAKFVA-RKQWVVAGAD 77 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~-----~la~~~~dg~v~iwd~~~~~~~----~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~ 77 (871)
.|.-+++.+.|.|+.. +||+. +..+++|.+...+.. ..+ ..+..++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999863 45554 447999998742111 111 12456999999987 5678889999
Q ss_pred CCeEEEEECCCCcE---EEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEeecC--CcceEEEEEe
Q 002881 78 DMFIRVYNYNTMDK---VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTFN 151 (871)
Q Consensus 78 dg~i~iw~~~~~~~---~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~ 151 (871)
|-+..|||++++.. ...+-+|...|..++|...+ ..+++++.||.++++|++......-+++.. ..+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 99999999998633 45567899999999999855 478899999999999999875544555443 4578899999
Q ss_pred cCCCCEEEEEECC-CcEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc------eEE
Q 002881 152 PKDTNTFASASLD-RTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS------CVQ 223 (871)
Q Consensus 152 p~~~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------~~~ 223 (871)
+++.+++++-..| ..|.+.|++.. .++..++.|.+.|+.++|.|.... .|+++++|..+.+||+...- ++.
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc-eeeecCCcceEEEEecccccccCCCCchh
Confidence 9999999986655 56999999875 577889999999999999998765 89999999999999997532 222
Q ss_pred EecCcccCeEEEEEcCC-CCEEEEEECCCcEEE
Q 002881 224 TLEGHTHNVSAVCFHPE-LPIIITGSEDGTVRI 255 (871)
Q Consensus 224 ~~~~~~~~v~~i~~~p~-~~~l~~~~~dg~v~i 255 (871)
... ..+.|..+.|+|. ...++.+.. ..+.+
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 223 4667999999964 457777663 34443
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.7e-15 Score=137.34 Aligned_cols=226 Identities=20% Similarity=0.286 Sum_probs=168.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCC----------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002881 60 VRSAKFVARKQWVVAGADDMFIRVYNYNT----------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (871)
Q Consensus 60 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~ 129 (871)
|..-+|+|.+++|++|+.+|.|.+..+++ ..++..+++|.++|..++|+. .+|++|++ |.|+-|.++
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEeeeh
Confidence 55568999999999999999999998863 233455689999999999993 46777665 999999887
Q ss_pred CCce---EEEE----eec-----CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecC
Q 002881 130 KGWM---CTQI----FEG-----HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197 (871)
Q Consensus 130 ~~~~---~~~~----~~~-----~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 197 (871)
.... ++.. ..- .-..|.++...| ..+.+++++.|+.++.||+++++....+++|...+.++.--...
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 4311 1111 111 124588899999 55556666689999999999999999999999999999873322
Q ss_pred CcCEEEEEeCCCeEEEEECCCCceEEEecCccc----------CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 002881 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH----------NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 198 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----------~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 267 (871)
. -+++|++||++++||.++++++..+..... .|-+++- +..++++|+ ...+.+|+++..+...++
T Consensus 169 ~--qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 169 G--QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred c--ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE
Confidence 2 499999999999999999999887754222 2444443 456788776 458999999999888888
Q ss_pred ecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 268 NYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 268 ~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
+.+ .++..+.|..+ .+++++....+.-
T Consensus 244 pip-a~v~~v~F~~d--~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 244 PIP-ARVHLVDFVDD--CVLIGGEGNHVQS 270 (325)
T ss_pred ecc-cceeEeeeecc--eEEEeccccceee
Confidence 766 67778888544 4555555544443
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=4.1e-16 Score=147.30 Aligned_cols=233 Identities=16% Similarity=0.135 Sum_probs=185.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc---eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCC
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTM 89 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~ 89 (871)
-.++|+|.+|++|+..+|++..+..|.||...... ..++++.|+..|+++.|+|..+.|++++.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45789999999999999999999999999976654 66788899999999999999999999999999999998 333
Q ss_pred --cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 90 --DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW---MCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 90 --~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
++...+..++...+++.|+|.++.+++|+.-..|.||-++... ..+++-..+.+.|.+++|+| ++-++++|+.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccC
Confidence 3444556789999999999999999999999999999887542 23345556778899999999 78899999999
Q ss_pred CcEEEEECC-----C-------------CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc-eEEEe
Q 002881 165 RTIKIWNLG-----S-------------PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-CVQTL 225 (871)
Q Consensus 165 g~i~i~d~~-----~-------------~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~ 225 (871)
+..++|+.- . ++.+..+....+.+..+.|+|+|. .|+-.+.|+.+.+-|..... .+...
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~--~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN--RLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC--EeeEecCCCceEEeecCCCchhccch
Confidence 999999751 1 111223335567899999999998 69999999999999987654 34444
Q ss_pred cCcccCeEEEEEcCCCCEEEEEECC
Q 002881 226 EGHTHNVSAVCFHPELPIIITGSED 250 (871)
Q Consensus 226 ~~~~~~v~~i~~~p~~~~l~~~~~d 250 (871)
....-+..++.|-.+. .++.++.|
T Consensus 246 ~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 246 ATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred hhccCCceeeEeecCC-ceeecCCC
Confidence 4444677777776654 34445555
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.6e-16 Score=147.93 Aligned_cols=244 Identities=13% Similarity=0.161 Sum_probs=181.1
Q ss_pred EeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC------CCcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 002881 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN------TMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (871)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 124 (871)
.+..|.+.|+++.|+.++++|++|++|..+++|+++ +.+++.... .|...|.|++|...+.++++|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 455789999999999999999999999999999985 335555554 4568999999999999999999999999
Q ss_pred EEECCCCceEEEEee--cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC-Ce--EEEecCCCCeeEEEEeecCCc
Q 002881 125 LWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PN--FTLDAHQKGVNCVDYFTGGDK 199 (871)
Q Consensus 125 iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~--~~~~~~~~~i~~i~~~~~~~~ 199 (871)
..|+++. ....++. ...+.|+.+..+| -.++|++.+.+|.|.+||.+... +. ..+.........+.|+|....
T Consensus 131 ~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 131 KHDIETK-QSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eeecccc-eeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999987 3333332 2234899999999 58999999999999999998755 22 223334556778889987654
Q ss_pred CEEEEEeCCCeEEEEECCCCce-EEE------ecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EEecC-
Q 002881 200 PYLITGSDDHTAKVWDYQTKSC-VQT------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN-TLNYG- 270 (871)
Q Consensus 200 ~~l~~~~~dg~i~v~d~~~~~~-~~~------~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~- 270 (871)
+|++.+..+-+-+||.+..+. +.. ++.....-.++.|+|+|+.+++--....-.+||+.+.++.- .+...
T Consensus 209 -Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 209 -LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred -eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 888999999999999886432 111 11111223567899999988887665566678877655322 22211
Q ss_pred -----CccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 271 -----LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 271 -----~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
...+.+++|..|-. +++|+++-.+++|.
T Consensus 288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK 320 (609)
T ss_pred Ccceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence 12466778866544 89999999999983
No 204
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.72 E-value=7.4e-16 Score=160.54 Aligned_cols=259 Identities=22% Similarity=0.226 Sum_probs=175.0
Q ss_pred cceeEEEEcCCCCEEEEEeCCeEEEEEe-cHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEec--cEEEEEcc
Q 002881 464 VTVKNLYWADSGDLVAIASDTSFYILKY-NRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG--DCFIYNNS 540 (871)
Q Consensus 464 ~~i~~i~~s~~~~~la~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~~~ 540 (871)
+.|.++.+|..+..+.+.+....+.+.. ...+-...+ .|+ .-..|++ |+++..+.
T Consensus 338 ~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil-------------nfc---------symqwvp~sdvivaqn~ 395 (1636)
T KOG3616|consen 338 GAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL-------------NFC---------SYMQWVPGSDVIVAQNG 395 (1636)
T ss_pred ccccceeccchhhhhhcccccceeEEEEcccchHHHHH-------------HHh---------hhheeccCcceEEecCC
Confidence 4566777777777777766665555431 000000000 011 1123775 77776665
Q ss_pred CCeEEEEECCe---EeEEEecccceEEEEEeeeCCEE-EEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhCCCCCc
Q 002881 541 SWRLNYCVGGE---VTTMFHLDRPMYLLGYLASQSRV-YLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPK 616 (871)
Q Consensus 541 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l-~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~ 616 (871)
+.++.+++.+ ..+...++.. +.++...+++. +.+-....-+.|.++...++|..++..+||+.|.
T Consensus 396 -dnl~iwyn~d~peqvt~~kikgd--v~~l~r~~~kteviv~e~takvayeld~~~iefgaaid~~df~ra~-------- 464 (1636)
T KOG3616|consen 396 -DNLCIWYNIDAPEQVTMFKIKGD--VEALERDADKTEVIVMEGTAKVAYELDEGLIEFGAAIDDGDFDRAT-------- 464 (1636)
T ss_pred -CceEEEecCCcchhheeeEeccc--chhhhcCCCceeEEEeecceeEEEEecCcceecccccccCchHHHH--------
Confidence 5566655433 2333333322 22222333332 3333445567899999999999999888887763
Q ss_pred chhHHHHHHHHhCCChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 617 EHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
.|++...+-. +...+|..+|++|++.|++-+|++||...+|
T Consensus 465 -------afles~~~~~--------------------------------da~amw~~laelale~~nl~iaercfaai~d 505 (1636)
T KOG3616|consen 465 -------AFLESLEMGP--------------------------------DAEAMWIRLAELALEAGNLFIAERCFAAIGD 505 (1636)
T ss_pred -------HHHHhhccCc--------------------------------cHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 3444432211 2246899999999999999999999999999
Q ss_pred cchhHHHHHhcCCH------------HHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002881 697 LSGLLLLYSSLGDA------------EGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (871)
Q Consensus 697 ~~~l~~l~~~~~~~------------~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~ 764 (871)
..+..+++-...-. +-.+-.+.++....++.+|..+++..++.++|+-||..+.+|+||+++|+..++
T Consensus 506 vak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~ 585 (1636)
T KOG3616|consen 506 VAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGH 585 (1636)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCC
Confidence 99999887553221 234556778888889999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhhhC--hhhhhhcCCCcc
Q 002881 765 SKVSEIVAIWRKDLQKVN--PKAAESLADPEE 794 (871)
Q Consensus 765 ~~~~~~~~~~~~~L~~~~--~~~a~~l~~~~~ 794 (871)
..++.+...|-++|...+ .++|+.-...++
T Consensus 586 p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd 617 (1636)
T KOG3616|consen 586 PALEKLKRSYLQALMDTGQDEKAAELKESDGD 617 (1636)
T ss_pred hHHHHHHHHHHHHHHhcCchhhhhhhccccCc
Confidence 999999888889987654 355554444443
No 205
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=4.5e-16 Score=150.87 Aligned_cols=154 Identities=20% Similarity=0.359 Sum_probs=134.9
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-------CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC
Q 002881 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (871)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d 208 (871)
..+.+|+.+|..++|+|.+.+.+++|+.|.+|.||++..+ +++..+.+|...|..++|+|...+ +|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 4567899999999999999999999999999999998643 467788999999999999998765 89999999
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCc-cEEEEEEeeCCCeEE
Q 002881 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE-RVWAIGYMKSSRRIV 287 (871)
Q Consensus 209 g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~ 287 (871)
..|.+|++.+|+.+.++. |...|.+++|+.+|.++++.+.|..|||||.++++.+..-..|.+ +.....|-.+|..+.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999988888 999999999999999999999999999999999999888766644 445566777888555
Q ss_pred EEEc
Q 002881 288 IGYD 291 (871)
Q Consensus 288 ~g~~ 291 (871)
+|..
T Consensus 233 TGfs 236 (472)
T KOG0303|consen 233 TGFS 236 (472)
T ss_pred eccc
Confidence 5543
No 206
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.5e-16 Score=148.33 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=155.8
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEE-EeecCC-cce
Q 002881 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQ-IFEGHS-HYV 145 (871)
Q Consensus 70 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~-~~v 145 (871)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||.|++||++...+..+ ....+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999987 456788999999999999997644433 334444 456
Q ss_pred EEEEEecCCCCEEEEEEC----CCcEEEEECCCCCC-eEE-EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC
Q 002881 146 MQVTFNPKDTNTFASASL----DRTIKIWNLGSPDP-NFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~-~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 219 (871)
.+++.+- ..+++++|+. +-.+.+||.+..+. +.. ...|...|+++.|+|...+ +|++|+.||.|.+||+...
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC-eEEeecccceEEeeecCCC
Confidence 6666654 5677887764 56799999998765 443 3679999999999998765 9999999999999998753
Q ss_pred c---eEEEecCcccCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEe
Q 002881 220 S---CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLN 268 (871)
Q Consensus 220 ~---~~~~~~~~~~~v~~i~~~p~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (871)
. .+...-.+...|..+.|+.++ +.|.+-+..++..+|+++.+.....+.
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 2 223333467789999999877 468888888999999999887554443
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.7e-15 Score=165.21 Aligned_cols=233 Identities=12% Similarity=0.101 Sum_probs=165.3
Q ss_pred CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEE--EEEccCCCCeEEEEEcCC
Q 002881 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKV--KVFEAHTDYIRCVAVHPT 110 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~--~~~~~~~~~i~~i~~~~~ 110 (871)
+..|.+||.+... .+.+..+...+....|+|||+.|+.++.+ ..|.+||+.+++.. ..+.+| ...++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999976554 45667788889999999999999987653 47999999887543 323333 346899999
Q ss_pred CCEEEEEE-CCCeEEEE--ECCCCceEEEEeecCCcceEEEEEecCCCCEEE-EEECCCcEEEEECCCCCCeEEEecCCC
Q 002881 111 LPYVLSSS-DDMLIKLW--DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLDRTIKIWNLGSPDPNFTLDAHQK 186 (871)
Q Consensus 111 ~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~ 186 (871)
|+.|+.++ .+|.+.|| |+.++ .. ..+..+...+....|+| +++.++ ++..+|...+|++...........+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~-~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGG-TP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCC-Ce-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC
Confidence 99888765 57765555 66655 33 33445666788999999 666555 444678888887653322222223333
Q ss_pred CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeC--CCCeEE
Q 002881 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA--TTYRLE 264 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~--~~~~~~ 264 (871)
.+..|+|+++ .++..+.++ +.+||+.++......... ...++.|+|+|++|+.++.+|...+|.+ .+|+..
T Consensus 336 --~~~~~SpDG~--~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 336 --YSAQISADGK--TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred --CCccCCCCCC--EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 4578999988 576666654 666999888754332222 3356789999999999999998888775 357778
Q ss_pred EEEecCCccEEEEEEeeC
Q 002881 265 NTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 265 ~~~~~~~~~i~~i~~~~~ 282 (871)
..+..+.+.+...+|+|-
T Consensus 409 ~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEccCCCCCCCCcccCCC
Confidence 888777778889999885
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=5.1e-17 Score=160.60 Aligned_cols=270 Identities=16% Similarity=0.248 Sum_probs=220.6
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 96 (871)
....+.++.+|.+|+.|+..|.|..+|+.++++...+... ..|.++.|-.+.+++|++. ...+.||| +.|..++.++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh
Confidence 4577899999999999999999999999999998888744 4689999999999888875 46799999 4577788887
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (871)
.|. .|..+.|-|..-+|++++..|.+.--|+.++ .+...+....+.+..++-+| -+..+-+|...|+|.+|+..+.+
T Consensus 208 ~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 208 RHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hcC-chhhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcc
Confidence 665 5888999998878889999999999999998 55555555667888999999 78899999999999999999999
Q ss_pred CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEE
Q 002881 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (871)
Q Consensus 177 ~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iw 256 (871)
+...+..|.++|.++++.++|. |+++.+.|..++|||+++...+.++.. ..+...+++|..| +++.|....|.||
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCc--EEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 9999999999999999999888 999999999999999998777776664 5667888899876 3344445589999
Q ss_pred eC-CCCe----EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 257 HA-TTYR----LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 257 d~-~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
.- ..+. ....-....+.|..+.|+|-...|-+|...|.-.+
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 42 2211 11111112257999999999999999988887655
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=2e-14 Score=152.35 Aligned_cols=259 Identities=13% Similarity=0.191 Sum_probs=173.8
Q ss_pred EEcCCeEEEEeCCC-Cc--eeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC-CCcE--EEEEccCCCCeEEE
Q 002881 33 SLYSGTVCIWNYQS-QT--MAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYN-TMDK--VKVFEAHTDYIRCV 105 (871)
Q Consensus 33 ~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~-~~~~--~~~~~~~~~~i~~i 105 (871)
...++.|.+|++.+ ++ .++.+. +.+....++++|++++|++++ .++.|.+|+++ ++.. ..... ..+....+
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i 85 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI 85 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence 35689999999964 43 344444 345677899999999998775 47889999987 3332 22222 33456789
Q ss_pred EEcCCCCEEEEEEC-CCeEEEEECCCCce---EEEEeecCCcceEEEEEecCCCCEE-EEEECCCcEEEEECCCCCCeE-
Q 002881 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWM---CTQIFEGHSHYVMQVTFNPKDTNTF-ASASLDRTIKIWNLGSPDPNF- 179 (871)
Q Consensus 106 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~~~- 179 (871)
+++|++++|++++. ++.|.+|++++... ...... +.....+++++| +++++ ++...++.|.+||+.+...+.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 99999999988764 78999999974311 122222 223467788999 56666 455567999999997632221
Q ss_pred ----EEe-cCCCCeeEEEEeecCCcCEEEEEeC-CCeEEEEECCC--Cc--eEEEecCc------ccCeEEEEEcCCCCE
Q 002881 180 ----TLD-AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT--KS--CVQTLEGH------THNVSAVCFHPELPI 243 (871)
Q Consensus 180 ----~~~-~~~~~i~~i~~~~~~~~~~l~~~~~-dg~i~v~d~~~--~~--~~~~~~~~------~~~v~~i~~~p~~~~ 243 (871)
... ........+.|+|+++ +++++.. ++.|.+|++.. ++ .+..+... ......+.++|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~--~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQ--YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCC--EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234457889999887 5666655 89999999973 32 23333221 112346889999999
Q ss_pred EEEEEC-CCcEEEEeCCCCe----EEEEEecCCccEEEEEEeeCCCeEEEEEc-CCeEEEe
Q 002881 244 IITGSE-DGTVRIWHATTYR----LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMVK 298 (871)
Q Consensus 244 l~~~~~-dg~v~iwd~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~g~~-dg~i~i~ 298 (871)
++++.. ++.|.+|++.... ........ ...+.+.++|+|++|+++.. ++.+.+|
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 888854 6899999985432 23333322 34568999999999998775 7777775
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=7.8e-14 Score=134.82 Aligned_cols=236 Identities=12% Similarity=0.179 Sum_probs=177.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCcE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDK 91 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~ 91 (871)
....+..+.|+.+...|.+|+.+| -++|+.+..............|.-+-|+. .++|..+.+ ..+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 455688888999999999999888 67888766543221222223455555544 455555543 4699999887776
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeec---CCcceEEEEEecCCCCEEEEE--ECCCc
Q 002881 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG---HSHYVMQVTFNPKDTNTFASA--SLDRT 166 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~--~~dg~ 166 (871)
+..+. ....|.++.++. ++|+++-.+ .|+|||+++. ++.+++.. +...+.++..++ .+.+++.- ...|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCC-CCceEEecCCCCCce
Confidence 66654 345689999986 467777776 4999999987 44444332 344455555555 45566652 34689
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCe-EEEEECCCCceEEEecCc--ccCeEEEEEcCCCCE
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEGH--THNVSAVCFHPELPI 243 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~--~~~v~~i~~~p~~~~ 243 (871)
|.+||..+-+++..+..|++++.+++|+++|. +|+++++.|+ |+||.+.+|+.+..++.. ...|.+++|+|++++
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 99999999999999999999999999999998 8999999886 789999999999988743 345889999999999
Q ss_pred EEEEECCCcEEEEeCCC
Q 002881 244 IITGSEDGTVRIWHATT 260 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~~ 260 (871)
|++.|..++|++|.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998753
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.1e-14 Score=138.67 Aligned_cols=232 Identities=15% Similarity=0.212 Sum_probs=178.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCceEE
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKGWMCT 135 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~ 135 (871)
..+..+.|+.+...|.+|+.|| .++|+.+............-.|.-+-|+. .+++..+.+ ..+++++.+.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence 4567778999999999999998 67888776554333333344566677775 456665554 459999998775554
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecC-CCCeeEEEEeecCCcCEEEEEe--CCCeEE
Q 002881 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGS--DDHTAK 212 (871)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~~~~--~dg~i~ 212 (871)
...- ...|.++.++. +.|+++-.+ .|.|||++..+.+.++... ..+--.++++++..+.|++.-+ ..|.|.
T Consensus 83 e~~f--pt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 83 EIFF--PTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEec--CCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 4433 45699999975 455555544 4999999998888777544 2222345556655554777543 468999
Q ss_pred EEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCc-EEEEeCCCCeEEEEEecCC--ccEEEEEEeeCCCeEEEE
Q 002881 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 213 v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~g 289 (871)
+||..+-+++..+..|.+++.+++|+|+|.+|||+|+.|+ ||++.+.+|+.+..+..+. ..|.+++|+|++++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999997 7999999999998887654 468999999999999999
Q ss_pred EcCCeEEEe
Q 002881 290 YDEGTIMVK 298 (871)
Q Consensus 290 ~~dg~i~i~ 298 (871)
++.++|+++
T Consensus 237 S~TeTVHiF 245 (391)
T KOG2110|consen 237 SNTETVHIF 245 (391)
T ss_pred cCCCeEEEE
Confidence 999999986
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.3e-13 Score=130.62 Aligned_cols=238 Identities=15% Similarity=0.252 Sum_probs=168.9
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEE-EEeCC------CeEEEEECCC
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADD------MFIRVYNYNT 88 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~iw~~~~ 88 (871)
....+++|+.|...+++|..+| .+||+.+.-+....-..+.+.+.-+..--..++|+ +|+.+ +.|.|||-..
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 3456699999999999998776 89999877433222222222222222222445555 33332 4799999666
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCE-EEE-EECCCc
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT-FAS-ASLDRT 166 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~~-~~~dg~ 166 (871)
.+++..+. -..+|..+.+.++ .|++.-. +.|.+|...++-+..+.+.....+=--++..|..+.. |+. |..-|.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 66666665 4678999999875 4666554 5899999986544444444332222233344433333 333 455699
Q ss_pred EEEEECCCCCC--eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCe-EEEEECCCCceEEEecCc--ccCeEEEEEcCCC
Q 002881 167 IKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEGH--THNVSAVCFHPEL 241 (871)
Q Consensus 167 i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~--~~~v~~i~~~p~~ 241 (871)
|.+-|+...+. ...+.+|...|.|++.+..|. .+++++..|+ |+|||..+|+.+..++.. ...|.+++|||++
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 99999987665 478899999999999999888 7999999886 899999999999988643 3469999999999
Q ss_pred CEEEEEECCCcEEEEeCCC
Q 002881 242 PIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~ 260 (871)
.+|+++|..|+|+|+.++.
T Consensus 239 s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEcCCCeEEEEEeec
Confidence 9999999999999998764
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.5e-15 Score=160.90 Aligned_cols=288 Identities=15% Similarity=0.178 Sum_probs=201.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccC---CCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC-
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH---TDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKG- 131 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~~~~- 131 (871)
.+...+.|+|=...++++.+.-.|+|||.+.++....|..+ ...|+.+.+-. |...+++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 35677899999999999998889999999999988887643 35688888765 3468999999999999974322
Q ss_pred ---ceEEEEee-------cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec-CCCCeeEEEEeecCCcC
Q 002881 132 ---WMCTQIFE-------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDYFTGGDKP 200 (871)
Q Consensus 132 ---~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~ 200 (871)
.++..-.. +..+.-.-+.|.. ....|++++.-..|+|||.........+.. ....++++.-+-.. ++
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GN 1222 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-Cc
Confidence 11221111 1111224567887 445566666688999999987766655532 33455665544333 34
Q ss_pred EEEEEeCCCeEEEEECCCCc---eEEEecCcccC--eEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEE--EecC--
Q 002881 201 YLITGSDDHTAKVWDYQTKS---CVQTLEGHTHN--VSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENT--LNYG-- 270 (871)
Q Consensus 201 ~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~--v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~--~~~~-- 270 (871)
.+++|..||.|++||.+... .+...+.|+.. |..+.+.++|- .|++|+.||.|++||++....... +..+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 89999999999999988643 46666778777 99999999775 499999999999999987432222 2221
Q ss_pred -CccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeec
Q 002881 271 -LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349 (871)
Q Consensus 271 -~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (871)
.+..+++..+++...+|+|+. +.+.||......+..+..++.. +
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F----------------------------------~ 1347 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF----------------------------------M 1347 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc----------------------------------c
Confidence 125899999999999999998 8888875444433333221111 1
Q ss_pred CccccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002881 350 GTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (871)
Q Consensus 350 ~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~ 382 (871)
+.....+.+++|+|-.-++|+|. |+.+.||...
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 22223446899999988888887 7778888654
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.9e-14 Score=136.93 Aligned_cols=249 Identities=11% Similarity=0.105 Sum_probs=165.8
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeee-cCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC----
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARK-QWVVAGADDMFIRVYNYNT---- 88 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~---- 88 (871)
+-.+..++||+.-..+|++..|-+|++||-.. +....++. ....|+|++|-|.+ +.|++|+..| |.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34688999999777889999999999999655 44444443 35679999999965 5677777655 88997642
Q ss_pred CcE----------EEEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCE
Q 002881 89 MDK----------VKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 89 ~~~----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
++. +....+| .+|++|.|++||..+++++- |..|.|||.+++ ..........+.+.-+.|+| ++.+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSP-dgd~ 252 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSP-DGDV 252 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcC-CCCE
Confidence 111 1112244 58999999999999998875 678999999988 44444444556688999999 8999
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~ 237 (871)
|+.++-|+..++|...............+.|....|+|.|.- +|++.+.+ -.+|++.....-..+.+
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf-LLf~~sgs--p~lysl~f~~~~~~~~~---------- 319 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF-LLFACSGS--PRLYSLTFDGEDSVFLR---------- 319 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE-EEEEEcCC--ceEEEEeecCCCccccC----------
Confidence 999999999999965443333333444568999999999984 44444433 33343322111111110
Q ss_pred cCCCCEEEEEECCCcEEEEeCC-----CCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCe
Q 002881 238 HPELPIIITGSEDGTVRIWHAT-----TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 238 ~p~~~~l~~~~~dg~v~iwd~~-----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
.++.-..+-+-|+. +++. .-.+.+.+++|.|.|.+||+....+.
T Consensus 320 --------~~~~k~~lliaDL~e~ti~ag~~-----l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 320 --------PQSIKRVLLIADLQEVTICAGQR-----LCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred --------cccceeeeeeccchhhhhhcCcc-----cccCccceeeECCCCCEEEEEEcCCc
Confidence 11111122222222 1211 11256789999999999999876665
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=8.3e-16 Score=154.93 Aligned_cols=217 Identities=22% Similarity=0.322 Sum_probs=167.4
Q ss_pred eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ccCCCCeEEEEEcC--CCCEEEEEECCCeEEE
Q 002881 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHP--TLPYVLSSSDDMLIKL 125 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i 125 (871)
+.+.+.+|.+.|+|+.|+.+|.+|++|++|-.+.|||.-..++++.+ .+|...|.++.|-| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44568899999999999999999999999999999999888888777 48999999999998 4568899999999999
Q ss_pred EECCC---------CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeE----------EEecCCC
Q 002881 126 WDWEK---------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF----------TLDAHQK 186 (871)
Q Consensus 126 wd~~~---------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~ 186 (871)
+|+.. .......+..|...|..++-.|.+++.|.+++.||+|+-+|++...... .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 2234455677889999999999777999999999999999998743211 1112223
Q ss_pred CeeEEEEeecCCcCEEEEEeCCCeEEEEECCC--------Cc----------eEEEe-cCcc-----------cCeEEEE
Q 002881 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT--------KS----------CVQTL-EGHT-----------HNVSAVC 236 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~--------~~----------~~~~~-~~~~-----------~~v~~i~ 236 (871)
...|+..+|.... ++++|+++-..++||.+. +. ++..+ .+|. ..++-+.
T Consensus 202 elk~ltisp~rp~-~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 202 ELKCLTISPSRPY-YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred eeeeeeecCCCCc-eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 4578999987665 999999999999999431 11 12222 1121 1256788
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeEEEE
Q 002881 237 FHPELPIIITGSEDGTVRIWHATTYRLENT 266 (871)
Q Consensus 237 ~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (871)
|+|+|.-|++.-..-.|+++|+..++....
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 999998666655455899999987765443
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=2.9e-13 Score=128.36 Aligned_cols=233 Identities=15% Similarity=0.265 Sum_probs=164.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCC--CeEEEEEcCCCCEEE-EEECC------CeEEEEECC
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTD--YIRCVAVHPTLPYVL-SSSDD------MLIKLWDWE 129 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~-~~~~d------g~i~iwd~~ 129 (871)
....++|+.|...+++|.++| .+||+.+..+.......+.+ .+.-|-|- .++|+ +|+.+ ..+.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999999999998888 89999876443222222222 22223232 23444 44433 579999955
Q ss_pred CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC-CCCCeEEEecCCCCeeEEEEeecCCcCEEEE-EeC
Q 002881 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD 207 (871)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~-~~~ 207 (871)
.. .+...+. ...+|.++.+.+ ..+++. ..+.|.+|... +.+.+..+.....|=--++..|..+..+|+. |..
T Consensus 84 k~-~~i~el~-f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 KE-RCIIELS-FNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred cC-cEEEEEE-eccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 44 3444333 457799999986 344443 35789999987 4455555543332222334445444435554 445
Q ss_pred CCeEEEEECCCCce--EEEecCcccCeEEEEEcCCCCEEEEEECCCc-EEEEeCCCCeEEEEEecCC--ccEEEEEEeeC
Q 002881 208 DHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKS 282 (871)
Q Consensus 208 dg~i~v~d~~~~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~i~~i~~~~~ 282 (871)
-|.|.+-|+...+. ...+..|.+.|.+++.+.+|..+||+|..|+ |||||..+|..+..+..+. ..|.+++|||+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 69999999986554 5778899999999999999999999999998 8999999999999887654 46999999999
Q ss_pred CCeEEEEEcCCeEEEecC
Q 002881 283 SRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~ 300 (871)
+.+||++++.|+++++..
T Consensus 238 ~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred ccEEEEEcCCCeEEEEEe
Confidence 999999999999999643
No 217
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=2.9e-13 Score=143.39 Aligned_cols=267 Identities=12% Similarity=0.167 Sum_probs=167.7
Q ss_pred EEeCCCeEEEEECCC-Cc--EEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEE-eecCCcceEEE
Q 002881 74 AGADDMFIRVYNYNT-MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQI-FEGHSHYVMQV 148 (871)
Q Consensus 74 ~~~~dg~i~iw~~~~-~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~ 148 (871)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++........ ..........+
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 335689999999964 33 344444 345677899999999988765 4788999998732122111 11123346789
Q ss_pred EEecCCCCEEEEEE-CCCcEEEEECCCCC----CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE
Q 002881 149 TFNPKDTNTFASAS-LDRTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (871)
Q Consensus 149 ~~~p~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 223 (871)
.++| +++.+++++ .++.|.+|++.... ....+. ......++.++|+++. ++++...++.|.+||+.+...+.
T Consensus 86 ~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 86 STDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCCCccc
Confidence 9999 667666655 48899999996432 122222 2344677889998873 34556667999999997633221
Q ss_pred -------EecCcccCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCC--Ce--EEEEEecC------CccEEEEEEeeCCCe
Q 002881 224 -------TLEGHTHNVSAVCFHPELPIIITGSE-DGTVRIWHATT--YR--LENTLNYG------LERVWAIGYMKSSRR 285 (871)
Q Consensus 224 -------~~~~~~~~v~~i~~~p~~~~l~~~~~-dg~v~iwd~~~--~~--~~~~~~~~------~~~i~~i~~~~~~~~ 285 (871)
... .......+.|+|+|++++++.. ++.|.+|++.. ++ ....+... ......+.++|++++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 2234578999999999988876 89999999873 33 33333221 112235889999999
Q ss_pred EEEEEc-CCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCC
Q 002881 286 IVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPN 364 (871)
Q Consensus 286 l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 364 (871)
++++.. ++.|.+| .++.++... .... . .. ....|..+.++|+
T Consensus 242 lyv~~~~~~~I~v~--------~i~~~~~~~-------~~~~-------------------~--~~-~~~~p~~~~~~~d 284 (330)
T PRK11028 242 LYACDRTASLISVF--------SVSEDGSVL-------SFEG-------------------H--QP-TETQPRGFNIDHS 284 (330)
T ss_pred EEEecCCCCeEEEE--------EEeCCCCeE-------EEeE-------------------E--Ee-ccccCCceEECCC
Confidence 988754 5666554 111111100 0000 0 00 0124567899999
Q ss_pred CCEEEEEc--CCcEEEEEee
Q 002881 365 GRFVVVCG--DGEYIIYTAL 382 (871)
Q Consensus 365 g~~lav~~--~~~~~i~~~~ 382 (871)
|++|.++. ++.+.+|...
T Consensus 285 g~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEEEccCCcEEEEEEc
Confidence 99888776 6778887653
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=6.6e-15 Score=160.68 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=158.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRV 83 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 83 (871)
.+.+..|...+.+++|||||+.|+.++.+ ..|.+||+.+++... +....+.....+|+|||++|++++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 34566788899999999999999987653 369999998875432 222233345789999999998765 5776555
Q ss_pred E--ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 84 Y--NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 84 w--~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
| |+.++.. ..+..+...+....|+|+|+.|+.++ .+|...||+++........+ .+.. .+..|+| +++.++.
T Consensus 275 y~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp-DG~~ia~ 349 (429)
T PRK01742 275 YVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISA-DGKTLVM 349 (429)
T ss_pred EEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCC-CCCEEEE
Confidence 4 6666554 45556777788999999999877665 56788888765321222222 3333 4578999 7788877
Q ss_pred EECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC--CCCceEEEecCcccCeEEEEEc
Q 002881 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFH 238 (871)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~--~~~~~~~~~~~~~~~v~~i~~~ 238 (871)
++.++ +.+||+.+++....... .......|+|++. +++.++.++...+|.+ .++..+..+..|.+.+...+|+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~--~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGI--MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCC--EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 77655 55699988764432222 2335678999988 7888888888887765 3578888888888889999999
Q ss_pred CC
Q 002881 239 PE 240 (871)
Q Consensus 239 p~ 240 (871)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=4.5e-16 Score=164.34 Aligned_cols=235 Identities=22% Similarity=0.371 Sum_probs=184.6
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~ 129 (871)
++.+.+|...|.|+.|...|.++++|++|..++||..+++.+.....+|.+.|+.++.+.+..++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE---Ee-cCCCCeeEEEEeecCCcCEEEEE
Q 002881 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LD-AHQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~-~~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
.+ ....++.+|++.|++++|+|. .+.+.||++++||.+-...+.. .. .....+.++.+...+. -++++
T Consensus 263 ~~-~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~--~f~Tg 334 (1113)
T KOG0644|consen 263 DG-APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD--RFLTG 334 (1113)
T ss_pred CC-chHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc--ccccc
Confidence 98 788889999999999999992 2778899999999871111110 11 1223455566665665 48888
Q ss_pred eCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC
Q 002881 206 SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR 284 (871)
Q Consensus 206 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~ 284 (871)
+.++.-..|.+..-. .+...+.-+..+.+. .+.++.-.+-.+.+|++.+|.+.+.+..+...+..+.++|-..
T Consensus 335 s~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred cCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 888887777654211 122222222222222 3566666778899999999999999999999999999999877
Q ss_pred eEE-EEEcCCeEEEe
Q 002881 285 RIV-IGYDEGTIMVK 298 (871)
Q Consensus 285 ~l~-~g~~dg~i~i~ 298 (871)
.++ .++.||...||
T Consensus 409 ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIW 423 (1113)
T ss_pred HhhhhccCCCceEee
Confidence 766 47889998887
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.2e-14 Score=135.91 Aligned_cols=191 Identities=16% Similarity=0.250 Sum_probs=142.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC---
Q 002881 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP--- 175 (871)
Q Consensus 99 ~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--- 175 (871)
+..++.++|++.-..++++..|-.|++|+-... ............|+|++|-|.....|++|+.. -|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 345788999997667889999999999997764 33333344556799999999878888888864 5889986421
Q ss_pred -CC----------eEEEecCCCCeeEEEEeecCCcCEEEEE-eCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 002881 176 -DP----------NFTLDAHQKGVNCVDYFTGGDKPYLITG-SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (871)
Q Consensus 176 -~~----------~~~~~~~~~~i~~i~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 243 (871)
.+ +..-.+| .+|++++|.++|.. ++++ ..+..|.+||..++..+.......+.++-+.||||+.+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~--l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI--LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCE--EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 11 1111233 68999999999873 5554 45789999999998876655555677899999999999
Q ss_pred EEEEECCCcEEEEeCC-CCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeE
Q 002881 244 IITGSEDGTVRIWHAT-TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i 295 (871)
|++++-|+..++|+.. +.....- ....++|...+|+|+|+.|...+....+
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred EEEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEcCCce
Confidence 9999999999999544 3333332 3344699999999999998876655443
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=3.5e-13 Score=141.72 Aligned_cols=289 Identities=15% Similarity=0.184 Sum_probs=186.9
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYN 85 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~ 85 (871)
+..++......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ....+++|+||+++++++ ..+.+.++|
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 334454444444557899999999999999999999999999999998654 468899999999999876 589999999
Q ss_pred CCCCcEEEEEccC-------CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCE
Q 002881 86 YNTMDKVKVFEAH-------TDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 86 ~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
.++.+.++.+... ...+..+..+|..+.+++.-. .+.|.+-|......................|+| ++++
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry 185 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRY 185 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSE
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccce
Confidence 9999998887532 346778888898886665555 488888897765344333333445677899999 6776
Q ss_pred EEE-EECCCcEEEEECCCCCCeEEEec----CCCCee-------EEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 158 FAS-ASLDRTIKIWNLGSPDPNFTLDA----HQKGVN-------CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 158 l~~-~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~-------~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
+++ ...+..|.++|..+++....+.. |..++. ...|...+.....++.-....+.+||..+.+.+.++
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 655 45677899999988766554432 222222 222443333223333333446667888889999999
Q ss_pred cCcccCeEEEEEcCCCCEEEEE----ECCCcEEEEeCCCCeEEEEEecCC-ccEEEEEEeeCCCeEEEEEcC--CeEEEe
Q 002881 226 EGHTHNVSAVCFHPELPIIITG----SEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDE--GTIMVK 298 (871)
Q Consensus 226 ~~~~~~v~~i~~~p~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~g~~d--g~i~i~ 298 (871)
.....+ ..+..||+++++.+. ...++|.++|..+.+....+.... .++..+.|+++|+.+.++..+ |.+.++
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 877666 888999999999988 445789999999998887776432 358999999999987765433 346554
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8e-15 Score=144.40 Aligned_cols=195 Identities=16% Similarity=0.217 Sum_probs=152.1
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe-e
Q 002881 61 RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-E 139 (871)
Q Consensus 61 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 139 (871)
.+++|+++|..+++|+.||.++||++.+...+.....|...|.++.|+|||++|++-+.| ...||+.+++..+...- .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999999888888888999999999999999999999999 89999999883332222 1
Q ss_pred cCCcceEEEEEecCCC---CE--EEEEECCCcEEEEECCCCCC-----eEEEecCCCCeeEEEEeecCCcCEEEEEeCCC
Q 002881 140 GHSHYVMQVTFNPKDT---NT--FASASLDRTIKIWNLGSPDP-----NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 140 ~~~~~v~~~~~~p~~~---~~--l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
..+-....+.|+. ++ .+ ++.....+.|..|++..... ..+.......|.+++.+++|+ +++.|+.+|
T Consensus 227 ~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk--f~AlGT~dG 303 (398)
T KOG0771|consen 227 SKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK--FLALGTMDG 303 (398)
T ss_pred ccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc--EEEEeccCC
Confidence 2233455677776 33 22 22333345666666543221 122223445799999999998 899999999
Q ss_pred eEEEEECCCCceEEEe-cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 210 TAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 210 ~i~v~d~~~~~~~~~~-~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
.|.+++..+.+.++.+ +.|..-|+.+.|+|+.+++++.+.|....+..+.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999988876655 4688899999999999999999988888877654
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=9.1e-14 Score=132.68 Aligned_cols=245 Identities=18% Similarity=0.313 Sum_probs=176.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc-----eeEEeeecC------------CCEEEEEEeCCCC--EEEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTE------------LPVRSAKFVARKQ--WVVA 74 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 74 (871)
..+-|.++.|..+|.+||+|..+|.|.+|.-.... ....++.|+ ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999999743321 223444443 2688999998764 5777
Q ss_pred EeCCCeEEEEECCCCcE-----------------------------------EEEE-ccCCCCeEEEEEcCCCCEEEEEE
Q 002881 75 GADDMFIRVYNYNTMDK-----------------------------------VKVF-EAHTDYIRCVAVHPTLPYVLSSS 118 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~~~-----------------------------------~~~~-~~~~~~i~~i~~~~~~~~l~~~~ 118 (871)
.+.|.+|++|.+..... .+.+ .+|.-.|.+|.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 88999999998742110 1111 2577779999999999887765
Q ss_pred CCCeEEEEECCCCceEEEEee--cC-----CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC------eEE-----
Q 002881 119 DDMLIKLWDWEKGWMCTQIFE--GH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP------NFT----- 180 (871)
Q Consensus 119 ~dg~i~iwd~~~~~~~~~~~~--~~-----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------~~~----- 180 (871)
+|-.|.+|+++-......+.. .+ ..-|++..|+|...+.|+-.+..|+|++.|++.... .+.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 567899999885433333322 12 235889999998899999999999999999985321 111
Q ss_pred -----EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC-CCceEEEecCccc------------C---eEEEEEcC
Q 002881 181 -----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTH------------N---VSAVCFHP 239 (871)
Q Consensus 181 -----~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~------------~---v~~i~~~p 239 (871)
+..--..|..+.|+++|+ |+++-. --+|++||+. ..+++.+.+.|.. . -..++|+.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGr--yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGR--YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCc--EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 111224577899999987 666654 4689999994 4566666665532 1 24578999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCe
Q 002881 240 ELPIIITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~ 262 (871)
++.+++|||....+++++...|.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 99999999999999999976654
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=1.6e-13 Score=151.69 Aligned_cols=256 Identities=15% Similarity=0.195 Sum_probs=180.1
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEeCCCC-------ceeEEeeecCCCEEEEEEeCCCCEEEEE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAG 75 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~-~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 75 (871)
+..+...+..|+..|..++.++.. .++++|+.||+|++||...- +...++.....++.++...+.++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 344566777899999999988865 89999999999999997642 2223444457789999999999999999
Q ss_pred eCCCeEEEEECCC--CcE-----EEEEccC-CCC-eEEEEEcC-CCC-EEEEEECCCeEEEEECCCCceEE-EEeecCCc
Q 002881 76 ADDMFIRVYNYNT--MDK-----VKVFEAH-TDY-IRCVAVHP-TLP-YVLSSSDDMLIKLWDWEKGWMCT-QIFEGHSH 143 (871)
Q Consensus 76 ~~dg~i~iw~~~~--~~~-----~~~~~~~-~~~-i~~i~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~ 143 (871)
+.||.|++.+++- .+. .+..+.+ .+. +..-++.. .+. .++.++..+.|..||.+...... .......+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999998875 211 1112222 222 33334433 233 68888888999999998652211 11223346
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe-cCCCCeeEEEEeecCC--cCEEEEEe-CCCeEEEEECCCC
Q 002881 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGD--KPYLITGS-DDHTAKVWDYQTK 219 (871)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~--~~~l~~~~-~dg~i~v~d~~~~ 219 (871)
.|++++.+| .++.+++|+..|.+.+||++-+.++..+. ++..++..+..+|-.. ...+.+++ ..+.|.+|++.+|
T Consensus 1197 ~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 799999999 88899999999999999999888887764 3456777777776544 32344444 5788999999988
Q ss_pred ceEEEecCc-----------------ccC--eEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002881 220 SCVQTLEGH-----------------THN--VSAVCFHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 220 ~~~~~~~~~-----------------~~~--v~~i~~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
.+..++... ... .....+...+.++.+|+.|..|+.||...
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 765554322 011 11222333446899999999999999653
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.9e-15 Score=149.69 Aligned_cols=231 Identities=11% Similarity=0.141 Sum_probs=190.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (871)
......+.++.+|..++.|+..|.|-.+|+.+++....+.. ...|..+.|-.+.++++++- ...++|||-... ..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt--ElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT--ELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCc--EEe
Confidence 34567899999999999999999999999999988877764 45688999998888777764 468999996543 334
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 137 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
.+..| ..|..+.|-| ..-+|++++..|.++.-|+..++.+..+....+.+..+.-+|-.. ++-+|..+|+|.+|+.
T Consensus 205 Clk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSP 280 (545)
T ss_pred ehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCceEEecCC
Confidence 44444 4589999999 777888999999999999999999988888888888888887655 8999999999999999
Q ss_pred CCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEE
Q 002881 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (871)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~ 296 (871)
.+.+++..+-.|.++|.++++.|+|.+++|.|.|..++|||+++...+.++.. ..+...+++|..| .||.+ ....+.
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~-~G~~v~ 357 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALS-YGDHVQ 357 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeee-cCCeee
Confidence 99999888888999999999999999999999999999999998887776665 2456677887655 34443 444566
Q ss_pred Ee
Q 002881 297 VK 298 (871)
Q Consensus 297 i~ 298 (871)
+|
T Consensus 358 iw 359 (545)
T KOG1272|consen 358 IW 359 (545)
T ss_pred ee
Confidence 66
No 226
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=133.32 Aligned_cols=287 Identities=14% Similarity=0.161 Sum_probs=190.5
Q ss_pred eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
+...+++|.+.|+++.|..++. |.+|...|.|++|++.+.+....++ .|...|+.+.--|+ ..+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 3455668899999999988776 9999999999999999999888888 67888999999987 4688899999999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEec-----CCC---CEEEEEECCC-cEEEEECCCCCCeEEE----ecCCCCeeEEEEe
Q 002881 128 WEKGWMCTQIFEGHSHYVMQVTFNP-----KDT---NTFASASLDR-TIKIWNLGSPDPNFTL----DAHQKGVNCVDYF 194 (871)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p-----~~~---~~l~~~~~dg-~i~i~d~~~~~~~~~~----~~~~~~i~~i~~~ 194 (871)
+..+ .... -|.-.+.++.|.+ +.. ..++.-+... .+.+-|......+... .+..+.+.|..|.
T Consensus 84 ia~s-~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYS-AFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCc-ceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9865 2222 1333344444443 100 1111111100 0111222111111111 1334566777643
Q ss_pred e-cCCcCEEEEEeCCCeEEEEECCCCceE----------EEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--
Q 002881 195 T-GGDKPYLITGSDDHTAKVWDYQTKSCV----------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY-- 261 (871)
Q Consensus 195 ~-~~~~~~l~~~~~dg~i~v~d~~~~~~~----------~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~-- 261 (871)
. .+...++++|.++|.+.+||+.++..+ .....|..+|.++.+.+.-..=++|+.+..+..|+++..
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 3 344557888999999999999987433 333458889999999987666678888888999987643
Q ss_pred e--EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCC
Q 002881 262 R--LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDG 339 (871)
Q Consensus 262 ~--~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (871)
. ....+......+..+...||++.+|+++.|+.++++.-+ + .
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr----------------t--------------------l 283 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR----------------T--------------------L 283 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec----------------c--------------------C
Confidence 2 222333344568889999999999999999999985211 1 1
Q ss_pred CeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002881 340 ERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~ 381 (871)
..+.+ +.-+...+++++|+|+...+|.++ |++|-+|+.
T Consensus 284 ~pLAV----LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAV----LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Cchhh----hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 11100 122234557888888877777777 778877753
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.3e-13 Score=138.63 Aligned_cols=283 Identities=12% Similarity=0.166 Sum_probs=207.0
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
.++.+.| +|+..-+.|..+|||+|++ +|.+.-.|++||+....+...-......|.-.-.+.|-..++.-..|.+|-+
T Consensus 42 ieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 42 IELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred HHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeee
Confidence 3444555 4888899999999999755 5777889999998776544322222445666666777777777778888766
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
..-- |.-. .+. -...-..|+++.-.--|++++....|+-++++.| .....+....+.+.++..++ -..+|++|+.
T Consensus 121 Hak~-G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~-~hgLla~Gt~ 195 (703)
T KOG2321|consen 121 HAKY-GRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINE-EHGLLACGTE 195 (703)
T ss_pred hhhc-Ceee-eee-cCcCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecC-ccceEEeccc
Confidence 5422 2211 111 1223355666654444666666668999999998 56666676778899999999 7789999999
Q ss_pred CCcEEEEECCCCCCeEEEec------CCC-----CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-CcccC
Q 002881 164 DRTIKIWNLGSPDPNFTLDA------HQK-----GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHN 231 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~------~~~-----~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~ 231 (871)
+|.|-+||.+....+.++.. +.+ .|+++.|+.+|- .+++|+++|.+.|||+++.+++..-. +..-+
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL--~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL--HVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce--eEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 99999999988776655532 222 389999987765 69999999999999999988865443 33457
Q ss_pred eEEEEEcCC--CCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 232 VSAVCFHPE--LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 232 v~~i~~~p~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
|..+.|.+. ++.+++.. ...++|||-.+|+....+... ..+..+|+-|++..+.++.+++.+..
T Consensus 274 i~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred eeeecccccCCCceEEecc-hHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCccee
Confidence 889999876 44566654 458999999999988887766 45899999999999999988877654
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.2e-13 Score=134.56 Aligned_cols=260 Identities=16% Similarity=0.261 Sum_probs=191.2
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEE-cCCeEEEEeCCCCceeEEe------eecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002881 13 QRSERVKSVDLHPSEP-WILASL-YSGTVCIWNYQSQTMAKSF------EVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~-~la~~~-~dg~v~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 84 (871)
....+|++++|.-+++ -++.+. .+..+..+........... .....+|..++.. ..+|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3456788888887665 244443 4666777766655443332 2345566666543 3468888999999999
Q ss_pred ECCCCc----EEEEEccCCCCeEEEEEcCCCCEE-EEEECC--CeEEEEECCCCceEEEEeecC-----------CcceE
Q 002881 85 NYNTMD----KVKVFEAHTDYIRCVAVHPTLPYV-LSSSDD--MLIKLWDWEKGWMCTQIFEGH-----------SHYVM 146 (871)
Q Consensus 85 ~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d--g~i~iwd~~~~~~~~~~~~~~-----------~~~v~ 146 (871)
..+.+. +...+..+ ..+..+.-++..+.+ ++|+.. ..+.|||+++. .+++... .-.++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccceeeeeec
Confidence 988443 22233333 346666666665555 458887 88999999976 3333321 23467
Q ss_pred EEEEecCC--CCEEEEEECCCcEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE
Q 002881 147 QVTFNPKD--TNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (871)
Q Consensus 147 ~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 223 (871)
++.|-| + ...|++++.-+.+++||.+.+ +|+..+.....++.++...|+++ ++++|..-|.+..||++.+....
T Consensus 207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN--FIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc--EEEEecccchhheecccCceeec
Confidence 888988 5 789999999999999999865 47788888889999999999988 79999999999999999988876
Q ss_pred E-ecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC
Q 002881 224 T-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 224 ~-~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~ 282 (871)
. +.+..+.|+++..+|.+++++++|-|..|||+|+.+.+++...... ..++++-+.++
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-s~lt~il~~~~ 342 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-SRLTFILLRDD 342 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh-ccccEEEecCC
Confidence 6 8889999999999999999999999999999999986665543322 44555555443
No 229
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.5e-14 Score=142.52 Aligned_cols=195 Identities=15% Similarity=0.128 Sum_probs=149.5
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--
Q 002881 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-- 96 (871)
Q Consensus 19 ~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-- 96 (871)
.+++|+++|..|++++.||+++||++.+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 899999999999999999999999988888777777899999999999999999999999 89999999996665544
Q ss_pred cCCCCeEEEEEcCCC---CE-EEE-EECCCeEEEEECCCCce----EEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 97 AHTDYIRCVAVHPTL---PY-VLS-SSDDMLIKLWDWEKGWM----CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~---~~-l~~-~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
..+.....+.|+.++ .+ +++ -..-+.|..|++..... ...........|.+++.++ ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 223345667787765 22 222 22335555555432111 1111122234699999999 89999999999999
Q ss_pred EEEECCCCCCeEEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC
Q 002881 168 KIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 168 ~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~ 217 (871)
.+++..+.+..... +.|...|+.+.|+|+.+ ++++.+.+....+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR--YLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcC--cccccccCCceeEEEEe
Confidence 99999877665444 57889999999999887 68888888777777654
No 230
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.59 E-value=1.7e-12 Score=130.78 Aligned_cols=344 Identities=14% Similarity=0.168 Sum_probs=224.2
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC-----------
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----------- 78 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------- 78 (871)
.+....-++..++|||.|.+|++....| |.+|....+..+..+. | ..|..+.|+|.+++|.+-+..
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCC
Confidence 3333556889999999999998876554 8999988776555444 3 459999999999999986543
Q ss_pred ----CeEEEEECCCCcEEEEEccCCCC--eE-EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC-CcceEEEEE
Q 002881 79 ----MFIRVYNYNTMDKVKVFEAHTDY--IR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYVMQVTF 150 (871)
Q Consensus 79 ----g~i~iw~~~~~~~~~~~~~~~~~--i~-~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~ 150 (871)
+.+.+||..+|..+..+.....+ .+ -+.|+-+..+++-.. ...++|+++ +.......+..- ...|....|
T Consensus 104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 104 FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEe
Confidence 35999999999999999876665 55 688998888776443 347899997 332222222111 245788889
Q ss_pred ecC-CCCEEEE-----EECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEE-----------eCCCeEEE
Q 002881 151 NPK-DTNTFAS-----ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG-----------SDDHTAKV 213 (871)
Q Consensus 151 ~p~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~-----------~~dg~i~v 213 (871)
+|. +...|+. ....+++++|.+..++.+.+-.-.+..-..+.|.+.|+ ++++- ..+..+++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~--~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK--YLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc--eEEEEEEEeeecccceeccceEEE
Confidence 984 2233343 34578899999987766554433333445677888777 34321 12356888
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc
Q 002881 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 214 ~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
++++...+... ....++|...+|.|.++.+++.+ .+..+.++|++.. +...+ +...-..+.|+|.++++++++-
T Consensus 260 ~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF 335 (561)
T COG5354 260 LRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGF 335 (561)
T ss_pred Eeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecC
Confidence 88874433322 25688999999999998776655 7788999998754 43333 3344567889999999988654
Q ss_pred C---CeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEE
Q 002881 292 E---GTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFV 368 (871)
Q Consensus 292 d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 368 (871)
+ |.+.+| ++-++...... +. + . ..+...|+|||+++
T Consensus 336 ~nl~gni~i~----------~~~~rf~~~~~-------~~----------~----------~----n~s~~~wspd~qF~ 374 (561)
T COG5354 336 DNLQGNIEIF----------DPAGRFKVAGA-------FN----------G----------L----NTSYCDWSPDGQFY 374 (561)
T ss_pred CccccceEEe----------ccCCceEEEEE-------ee----------c----------C----CceEeeccCCceEE
Confidence 4 334332 33333221100 00 0 0 11356799999987
Q ss_pred EEEc-------CCcEEEEEeecccccCcCceeEEEEecCCcEEEEec
Q 002881 369 VVCG-------DGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRES 408 (871)
Q Consensus 369 av~~-------~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 408 (871)
-+.. |+.+.||++.... ....+.+.|.|.|+++.+.+
T Consensus 375 ~~~~ts~k~~~Dn~i~l~~v~g~~---~fel~~~~W~p~~~~~ttsS 418 (561)
T COG5354 375 DTDTTSEKLRVDNSIKLWDVYGAK---VFELTNITWDPSGQYVTTSS 418 (561)
T ss_pred EecCCCcccccCcceEEEEecCch---hhhhhhccccCCcccceeec
Confidence 7665 5667777654322 11456677777777765444
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=3.2e-12 Score=134.51 Aligned_cols=256 Identities=16% Similarity=0.131 Sum_probs=166.0
Q ss_pred CEEEE-EEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEE
Q 002881 28 PWILA-SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (871)
Q Consensus 28 ~~la~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~ 106 (871)
+++++ -..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 44544 4458999999999999999998665545567899999999999999999999999999999987544 468899
Q ss_pred EcCCCCEEEEEE-CCCeEEEEECCCCceEEEEeec------CCcceEEEEEecCCCCEEEEEEC-CCcEEEEECCCCCCe
Q 002881 107 VHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEG------HSHYVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPN 178 (871)
Q Consensus 107 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~ 178 (871)
++++|++++++. .++.+.++|.++.+....+..+ ...++..+..+| ....++..-. .+.|.+.|....++.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEecccccc
Confidence 999999998775 5899999999987444433221 234677888888 5555555544 588888898766544
Q ss_pred EE-EecCCCCeeEEEEeecCCcCEEE-EEeCCCeEEEEECCCCceEEEec----CcccCeEEEEEcCC----------CC
Q 002881 179 FT-LDAHQKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQTKSCVQTLE----GHTHNVSAVCFHPE----------LP 242 (871)
Q Consensus 179 ~~-~~~~~~~i~~i~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~----~~~~~v~~i~~~p~----------~~ 242 (871)
.. ............|.|+++ |++ +...++.|.++|..+++.+..+. .|..+...+ .||. +.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgr--y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGR--YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSS--EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred ceeeecccccccccccCcccc--eeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 32 222345567788988876 554 45667899999999887766553 233333332 2222 22
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEE
Q 002881 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g 289 (871)
..++.-..+.+.+|+..+++.+..+....+. .-+..+|+++++.+.
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 2222222336678999999999999887666 778889999999887
No 232
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=6.4e-13 Score=146.99 Aligned_cols=263 Identities=14% Similarity=0.183 Sum_probs=188.0
Q ss_pred EeCCCCceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC-------cEEEEEccCCCCeEEEEEcCCCCE
Q 002881 42 WNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 42 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
|+ -.|.++..+..|...|..++.++.. .++++||.||+|++||.... +...++......+.++...+.+..
T Consensus 1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CC-ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 66 3577888888898888888887765 99999999999999998632 222333445678999999999999
Q ss_pred EEEEECCCeEEEEECCCCceE------EEEeec-CCcce-EEEEEecCCCC-EEEEEECCCcEEEEECCCCCCeEEE--e
Q 002881 114 VLSSSDDMLIKLWDWEKGWMC------TQIFEG-HSHYV-MQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTL--D 182 (871)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~------~~~~~~-~~~~v-~~~~~~p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~ 182 (871)
+++++.||.|.+.+++..... ...... ..+.+ ..-++...... .++.+...+.|..||++.......+ .
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998762111 111111 12233 33344443344 7888889999999999887655444 3
Q ss_pred cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-CcccCeEEEEEcCCCC---E-EEEEE-CCCcEEEE
Q 002881 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELP---I-IITGS-EDGTVRIW 256 (871)
Q Consensus 183 ~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~i~~~p~~~---~-l~~~~-~dg~v~iw 256 (871)
...+.|++++.+|.+. ++++|++.|.+.+||++-+.++.... ++..++..+..+|-.+ . +.+++ ..+.|.+|
T Consensus 1193 ~~hG~vTSi~idp~~~--WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN--WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEEecCCce--EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 4567899999999887 89999999999999999988887765 2446777777776433 3 44444 57789999
Q ss_pred eCCCCeEEEEEecCC-----------------c--cEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEE
Q 002881 257 HATTYRLENTLNYGL-----------------E--RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS 307 (871)
Q Consensus 257 d~~~~~~~~~~~~~~-----------------~--~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~ 307 (871)
++.+|....++.... . .....++...+..+.+|+.|+.|+.|....+...+
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss 1340 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS 1340 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc
Confidence 999987665554331 1 11223344446678899999999999766655553
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.8e-12 Score=141.02 Aligned_cols=235 Identities=13% Similarity=0.071 Sum_probs=160.4
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCE
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
..|.+||.+.... +.+..+...+...+|+|||+.|+..+. +..|.+|++.+++.... ....+......|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3699999765543 445556778999999999999987643 45899999988764332 222333556899999998
Q ss_pred EEEE-ECCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CCc--EEEEECCCCCCeEEEecCCCC
Q 002881 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRT--IKIWNLGSPDPNFTLDAHQKG 187 (871)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~ 187 (871)
|+.. +.+| .|.+||++++ ...+.. .+...+....|+| +++.++..+. ++. |.++|+.++.. ..+......
T Consensus 257 La~~~~~~g~~~I~~~d~~tg-~~~~lt-~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~ 332 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASG-QIRQVT-DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ 332 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCC-CEEEcc-CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 8865 3344 5899999887 444433 3345678899999 6777766554 344 55556666543 344434445
Q ss_pred eeEEEEeecCCcCEEEEEeC-C--CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCc---EEEEeCCCC
Q 002881 188 VNCVDYFTGGDKPYLITGSD-D--HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT---VRIWHATTY 261 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~~-d--g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~---v~iwd~~~~ 261 (871)
.....|+|+++ +++..+. + ..|.+||+.++... .+... .......|+|||..|+.++.++. +.++++ +|
T Consensus 333 ~~~~~~SpDG~--~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 333 NQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred ccCEEECCCCC--EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 56788999987 4555443 2 35888999877643 33322 22346789999999999887764 677776 46
Q ss_pred eEEEEEecCCccEEEEEEeeC
Q 002881 262 RLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 262 ~~~~~~~~~~~~i~~i~~~~~ 282 (871)
+....+..+.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCeEECccCCCCcCCcccCCC
Confidence 666667666677888888873
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.8e-13 Score=145.18 Aligned_cols=235 Identities=13% Similarity=0.033 Sum_probs=155.4
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCE
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
..|.++|. ++...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ....+.+.+.+|+|+|+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 46777886 444445555677889999999999999887642 4699999998876433 333455678999999998
Q ss_pred EE-EEECCCeEEEEE--CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEEEEC--CCCCCeEEEecCCCC
Q 002881 114 VL-SSSDDMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNL--GSPDPNFTLDAHQKG 187 (871)
Q Consensus 114 l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~ 187 (871)
|+ +.+.+|...||. ..++ . ...+..+........|+| +++.++..+ .+|...+|.+ .++.. ..+......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGS-G-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCC-C-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCC
Confidence 87 456677766665 4444 2 333444555567789999 677666544 3466666654 44432 222222333
Q ss_pred eeEEEEeecCCcCEEEEEeCCC---eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCC---cEEEEeCCCC
Q 002881 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg---~v~iwd~~~~ 261 (871)
.....|+|+|+ +++..+.++ .|.+||+.+++...... . .......|+|+|+.|+..+.++ .+.+.+. ++
T Consensus 330 ~~~~~~SpDG~--~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g 404 (427)
T PRK02889 330 NTSPRISPDGK--LLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DG 404 (427)
T ss_pred cCceEECCCCC--EEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CC
Confidence 44678999988 566555443 69999998876543322 2 2346789999999888777544 3555565 46
Q ss_pred eEEEEEecCCccEEEEEEeeC
Q 002881 262 RLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 262 ~~~~~~~~~~~~i~~i~~~~~ 282 (871)
+....+..+.+.+...+|+|-
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceEEeecCCCCCCCCccCCC
Confidence 666666555566777788774
No 235
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=142.30 Aligned_cols=253 Identities=16% Similarity=0.224 Sum_probs=191.0
Q ss_pred eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ccCCCCeEEEEEcCC--CCEEEEEECCCeEEE
Q 002881 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPT--LPYVLSSSDDMLIKL 125 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i 125 (871)
+...+..|.+.|..+.|+..|..|++|++|..|.+||+.++.....+ .+|...|....|-|. ...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 44567789999999999999999999999999999999988877766 478888888888884 457999999999999
Q ss_pred EECCCCceE--EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe---cCCC---CeeEEEEeecC
Q 002881 126 WDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQK---GVNCVDYFTGG 197 (871)
Q Consensus 126 wd~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~i~~i~~~~~~ 197 (871)
-.+.....+ ...+..|.++|.-++.-|.....|.+++.|+.+.-+|++.+.+...+. .+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 876533222 345667999999999999889999999999999999999876654442 2222 46678887766
Q ss_pred CcCEEEEEeCCCeEEEEECCCCc------eEEEec------CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--C--
Q 002881 198 DKPYLITGSDDHTAKVWDYQTKS------CVQTLE------GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT--Y-- 261 (871)
Q Consensus 198 ~~~~l~~~~~dg~i~v~d~~~~~------~~~~~~------~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~--~-- 261 (871)
.. .+++|+.|..+++||.+.-. .+..+. .....|++++|+.++.-+++.-.|-.|+++.... |
T Consensus 294 t~-~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TN-EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred cc-ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 79999999999999986421 122222 2234699999997776666666777899995332 2
Q ss_pred --------eEEE-EEecCCc--cEEEEE-EeeCCCeEEEEEcCCeEEEecCCC
Q 002881 262 --------RLEN-TLNYGLE--RVWAIG-YMKSSRRIVIGYDEGTIMVKIGRE 302 (871)
Q Consensus 262 --------~~~~-~~~~~~~--~i~~i~-~~~~~~~l~~g~~dg~i~i~~~~~ 302 (871)
..+. .+.+|.. .|..+- |.|...++++|++-|.|.||..+.
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 1111 2444432 355554 568899999999999999995543
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=9.9e-13 Score=143.15 Aligned_cols=222 Identities=10% Similarity=0.027 Sum_probs=154.1
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~ 82 (871)
+.+..+.+.+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445566778999999999999987643 4579999998876443 22233445678999999998865 3344 699
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
+||+++++.... ..+...+....|+|+|+.|+.++.+ | .|.++|+.++ ..... ..+........|+| +++.++
T Consensus 271 ~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-~~~~l-t~~~~~~~~~~~Sp-DG~~Ia 346 (429)
T PRK03629 271 VMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-APQRI-TWEGSQNQDADVSS-DGKFMV 346 (429)
T ss_pred EEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-CeEEe-ecCCCCccCEEECC-CCCEEE
Confidence 999988766443 3344567889999999998877764 3 4555577665 23222 33344466789999 677776
Q ss_pred EEECC---CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC---eEEEEECCCCceEEEecCcccCeE
Q 002881 160 SASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVS 233 (871)
Q Consensus 160 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~ 233 (871)
..+.+ ..|.+||+.++... .+.. ........|+|+|. .++.++.++ .+.++++. +.....+..|.+.+.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~--~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGT--MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK 421 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCC--EEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcC
Confidence 65543 35888999877543 3332 22234678999988 577666655 37777874 666677777888889
Q ss_pred EEEEcCC
Q 002881 234 AVCFHPE 240 (871)
Q Consensus 234 ~i~~~p~ 240 (871)
..+|+|-
T Consensus 422 ~p~Wsp~ 428 (429)
T PRK03629 422 FPAWSPY 428 (429)
T ss_pred CcccCCC
Confidence 9999983
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.5e-12 Score=142.65 Aligned_cols=234 Identities=13% Similarity=0.048 Sum_probs=158.7
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCE
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
..|.+||... ...+.+..+...+.+..|+|||+.|+..+. +..|.+||+.+++... +..+.+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4699999754 444556667778999999999999998774 3479999998876543 3334445567899999998
Q ss_pred EEE-EECCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCc--EEEEECCCCCCeEEEecCCCC
Q 002881 114 VLS-SSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRT--IKIWNLGSPDPNFTLDAHQKG 187 (871)
Q Consensus 114 l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~ 187 (871)
|+. .+.+| .|++||+.++ .... +..+.......+|+| +++.++.++ .+|. |.++++.+++.. .+......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g-~~~~-lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~ 337 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSR-QLTR-LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNY 337 (433)
T ss_pred EEEEEeCCCCceEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCC
Confidence 764 45555 5999999887 3333 344545557789999 677666655 4454 666777665533 33323334
Q ss_pred eeEEEEeecCCcCEEEEEeCC-C--eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCC
Q 002881 188 VNCVDYFTGGDKPYLITGSDD-H--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTY 261 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d---g~v~iwd~~~~ 261 (871)
....+|+|+++ .++..+.+ + .|.+||+.+++.. .+. +........|+|+|+.++..+.+ +.|.+++.. +
T Consensus 338 ~~~~~~SpDG~--~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g 412 (433)
T PRK04922 338 NARASVSPDGK--KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-G 412 (433)
T ss_pred ccCEEECCCCC--EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 45689999998 45554433 2 6999999877654 333 22234567999999988877653 357888874 4
Q ss_pred eEEEEEecCCccEEEEEEee
Q 002881 262 RLENTLNYGLERVWAIGYMK 281 (871)
Q Consensus 262 ~~~~~~~~~~~~i~~i~~~~ 281 (871)
.....+..+.+.+...+|+|
T Consensus 413 ~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEcccCCCCCCCCccCC
Confidence 45555555556677777876
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=5.3e-12 Score=138.54 Aligned_cols=234 Identities=11% Similarity=0.049 Sum_probs=160.3
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCE
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
..|.++|... ...+.+..+...+.+..|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|+|+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 3788999754 445567778889999999999999988764 468999999887653 44455667788999999998
Q ss_pred EE-EEECCCe--EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCeEEEecCCCC
Q 002881 114 VL-SSSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (871)
Q Consensus 114 l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~ 187 (871)
|+ +.+.+|. |.+||+.++ ... .+..+........|+| +++.++..+. +| .|.++|+.++.. ..+......
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~-~~~-~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSG-TTT-RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCC-ceE-EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence 76 4455554 777888876 333 3444556677899999 6777666553 33 688888876554 344434555
Q ss_pred eeEEEEeecCCcCEEEEEeCC---CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECC------CcEEEEeC
Q 002881 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED------GTVRIWHA 258 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d------g~v~iwd~ 258 (871)
+....|+|+++ .|+....+ ..|.+||+.++.. ..+. ....+....|+|+|+.|+..+.+ ..+.++|+
T Consensus 336 ~~~~~~SpdG~--~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 336 YSTPVWSPRGD--LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ccCeEECCCCC--EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 67788999998 45554432 3688889865443 3333 22346788999999988765543 25788887
Q ss_pred CCCeEEEEEecCCccEEEEEEeeC
Q 002881 259 TTYRLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~i~~~~~ 282 (871)
..+.. ..+.. .+.+...+|+|-
T Consensus 412 ~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 412 TGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCCce-EEccC-CCCccCcccCCC
Confidence 65544 34443 344666777763
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4.1e-11 Score=122.65 Aligned_cols=321 Identities=16% Similarity=0.272 Sum_probs=200.3
Q ss_pred CCeEEEEeCCCCcee-EEeee--cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCC
Q 002881 36 SGTVCIWNYQSQTMA-KSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (871)
Q Consensus 36 dg~v~iwd~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 112 (871)
.-.+.+|+....... ..+.. ...+++..+++++|++++.+. +..+.|++..++..+.+.... ...++.|+|-+.
T Consensus 10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~ 86 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGN 86 (566)
T ss_pred cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeeccccc
Confidence 345788875542222 22222 144578889999998877764 567999998888655554433 689999999999
Q ss_pred EEEEE-----EC-----CCeEEEEECCCCceEEEEee-cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE
Q 002881 113 YVLSS-----SD-----DMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (871)
Q Consensus 113 ~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 181 (871)
+|.+= .. .-.+.+|+.+++ .....+. ..... ++..|++ +. .++.--..+.+.+|++.+.+.+..
T Consensus 87 yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~-W~~qfs~-dE-sl~arlv~nev~f~~~~~f~~~~~- 161 (566)
T KOG2315|consen 87 YLLTWEPWAIYGPKNASNPNVLVYNVETG-VQRSQIQKKMQNG-WVPQFSI-DE-SLAARLVSNEVQFYDLGSFKTIQH- 161 (566)
T ss_pred ccccccccccccCCCCCCCceeeeeeccc-eehhheehhhhcC-ccccccc-ch-hhhhhhhcceEEEEecCCccceee-
Confidence 88752 11 235779999985 3333332 23332 6788887 44 344434457899999987543322
Q ss_pred ecCCCCeeEEEEeecCCcCEEEE-----EeCCCeEEEEECCCCceEEEe---cCcccCeEEEEEcCCCC-EEEEEE--CC
Q 002881 182 DAHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSCVQTL---EGHTHNVSAVCFHPELP-IIITGS--ED 250 (871)
Q Consensus 182 ~~~~~~i~~i~~~~~~~~~~l~~-----~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~i~~~p~~~-~l~~~~--~d 250 (871)
.-|...|+.+.++|.+..+.+++ ++.-+.|++|.+.....-..+ .-....-..+.|++.|. +|+..+ -|
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence 34577889999999876655654 345568999987632211111 11222334678888776 233222 22
Q ss_pred ---------CcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEE--EEcCCeEEEecCCCcceEEEeCCCcEEEEee
Q 002881 251 ---------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI--GYDEGTIMVKIGREEPVASMDNSGKIIWAKH 319 (871)
Q Consensus 251 ---------g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~--g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 319 (871)
.++++.++......-.+ ...++|.++.|+|+|+-+++ |..--.+.++ +..++.++.
T Consensus 242 ktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif----------nlr~~~v~d-- 308 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIF----------NLRGKPVFD-- 308 (566)
T ss_pred CCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEE----------cCCCCEeEe--
Confidence 35888887732332223 33589999999999988776 3333344432 223333211
Q ss_pred cceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc----CCcEEEEEeecccccCc---Cce
Q 002881 320 NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNRSF---GSA 392 (871)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~----~~~~~i~~~~~~~~~~~---~~~ 392 (871)
+..| .-+.+-|+|.|+++++++ .|.+.+|++...+.... ...
T Consensus 309 ----------------f~eg---------------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t 357 (566)
T KOG2315|consen 309 ----------------FPEG---------------PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT 357 (566)
T ss_pred ----------------CCCC---------------CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc
Confidence 1112 235789999999999998 58899999887543222 234
Q ss_pred eEEEEecCCcEEEEec
Q 002881 393 LEFVWSSDGEYAVRES 408 (871)
Q Consensus 393 ~~~~~s~~~~~~~~~~ 408 (871)
+-+.|+|||+|+++++
T Consensus 358 t~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTAT 373 (566)
T ss_pred eEEEEcCCCcEEEEEe
Confidence 6788999999887665
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.1e-12 Score=142.94 Aligned_cols=222 Identities=10% Similarity=0.080 Sum_probs=149.6
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEE-EeCCCeEEEE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDMFIRVY 84 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw 84 (871)
+.+..+.+.+.+.+|||||+.|+..+.. ..|.+||+.+++... +....+.+.+..|+|||+.|+. .+.+|...+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 3455678889999999999999887642 459999998887543 3334456678999999998875 5667766665
Q ss_pred E--CCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEE--CCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 85 N--YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 85 ~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
. ..++. ...+..+........|+|||+.|+..+. +|...+|. ..++ ...... .+........|+| +++.++
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~~~~lt-~~g~~~~~~~~Sp-DG~~Ia 343 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-AAQRVT-FTGSYNTSPRISP-DGKLLA 343 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-ceEEEe-cCCCCcCceEECC-CCCEEE
Confidence 4 44443 4555555556677899999998887664 45556664 4444 222222 2223345678999 778877
Q ss_pred EEECCC---cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC-CC--eEEEEECCCCceEEEecCcccCeE
Q 002881 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVS 233 (871)
Q Consensus 160 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~ 233 (871)
..+.++ .|.+||+.+++... +.. ........|+|+++ .|+.++. .| .+.+.+. ++.....+..+.+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGR--YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCC--EEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCC
Confidence 766554 69999998776433 322 22346789999988 4555443 33 3666666 3666666666667788
Q ss_pred EEEEcCC
Q 002881 234 AVCFHPE 240 (871)
Q Consensus 234 ~i~~~p~ 240 (871)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 8888874
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.5e-11 Score=125.71 Aligned_cols=272 Identities=11% Similarity=0.092 Sum_probs=182.0
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-----eC-----CCeEEEE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-----AD-----DMFIRVY 84 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~iw 84 (871)
+.+++..++|++|+++|.+. +..+.|++..++..+.+... ..+.++.|+|.|.+|.+- .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44578899999999888765 77899999888864443332 278999999999988762 11 2457899
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEE---------------
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT--------------- 149 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------------- 149 (871)
+..++.....+......-++..|++|..+.+ --..+.+.+|++.+.......+ |...|..+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEcc
Confidence 9998554444433222226788888764322 2223467777766542222222 223344444
Q ss_pred -------------------------------------EecCCCCEEEEEECC-----------CcEEEEECCCCCCeEEE
Q 002881 150 -------------------------------------FNPKDTNTFASASLD-----------RTIKIWNLGSPDPNFTL 181 (871)
Q Consensus 150 -------------------------------------~~p~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~ 181 (871)
|++.+..+|+.++.| .++++.++.+.+....
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~- 266 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP- 266 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-
Confidence 444333333333221 2344444442222222
Q ss_pred ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECC---CcEEEEeC
Q 002881 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHA 258 (871)
Q Consensus 182 ~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d---g~v~iwd~ 258 (871)
-...++|.++.|+|++..-.++.|..--.+.|||++ +.++..+. .++=.++-|+|.|++++.+|-+ |.+-|||.
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 234789999999999987566777788899999987 66766654 5566789999999999988754 78999999
Q ss_pred CCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 259 TTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.+.+++..+.... -+-+.|+|||.++++++..-.+++.
T Consensus 344 ~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred cchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEec
Confidence 9988887776553 3567899999999999988777773
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.2e-11 Score=125.87 Aligned_cols=334 Identities=14% Similarity=0.194 Sum_probs=208.4
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEEC
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----------DMFIRVYNY 86 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iw~~ 86 (871)
-+-+.|||.|.||++--..| |.+|--.+...++.+. |. .|.-+.|||..++|++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999987666 8899876666666664 43 4889999999999998653 258999999
Q ss_pred CCCcEEEEEccCCC--Ce-EEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 87 NTMDKVKVFEAHTD--YI-RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 87 ~~~~~~~~~~~~~~--~i-~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
.+|...+.|....+ .+ .-..||.|++++|--..+ .|.||+..+- .+...-.-.-..|....|+| .+++|+--+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-~lld~Kslki~gIr~FswsP-~~~llAYwtp 366 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-MLLDKKSLKISGIRDFSWSP-TSNLLAYWTP 366 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-eeecccccCCccccCcccCC-CcceEEEEcc
Confidence 99998888865222 22 346899999999977765 7899987653 22222122335588899999 6666664332
Q ss_pred C-----CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe----------CCCeEEEEECCCCceEEEecCc
Q 002881 164 D-----RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS----------DDHTAKVWDYQTKSCVQTLEGH 228 (871)
Q Consensus 164 d-----g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~ 228 (871)
. ..+.+-.+.+.+.+++-..+...-..+.|-.+|+ +|+.-- .-..+-|+.++........-..
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd--yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD--YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc--EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 1 2355555555555544433333333455555555 665432 1123556666654432222234
Q ss_pred ccCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCC-C---eEEEEEecCCccEEEEEEeeCCCeEEEEEcC---CeEEEe
Q 002881 229 THNVSAVCFHPELPIIITGSE---DGTVRIWHATT-Y---RLENTLNYGLERVWAIGYMKSSRRIVIGYDE---GTIMVK 298 (871)
Q Consensus 229 ~~~v~~i~~~p~~~~l~~~~~---dg~v~iwd~~~-~---~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~d---g~i~i~ 298 (871)
...|...+|-|.|+.+++-+. ..++.+|...+ . +++..+. ....+.+.|+|.|++++++.-- |.+.+.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 567889999999998776553 24688887763 2 2333333 2456789999999999987533 333332
Q ss_pred cCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCcc-ccCCceEEECCCCCEEEEEc-----
Q 002881 299 IGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC-DLYPQSLKHNPNGRFVVVCG----- 372 (871)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~lav~~----- 372 (871)
+.+- .+.. ..... ....+.+.|.|.|+++++++
T Consensus 523 ----------D~~~-------a~~k------------------------~~~~~eh~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 523 ----------DTDY-------ADLK------------------------DTASPEHFAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred ----------ecch-------hhhh------------------------hccCccccccccceECCCCCEEEEeeehhhh
Confidence 1100 0000 00110 11235789999999999886
Q ss_pred --CCcEEEEEeecc--cccCcCceeEEEEecCCc
Q 002881 373 --DGEYIIYTALAW--RNRSFGSALEFVWSSDGE 402 (871)
Q Consensus 373 --~~~~~i~~~~~~--~~~~~~~~~~~~~s~~~~ 402 (871)
++.+.+|+..+. +....+....+.|-|.--
T Consensus 562 k~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPp 595 (698)
T KOG2314|consen 562 KVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPP 595 (698)
T ss_pred ccccceEEEEeecHHHHHHHHHHHHhhccCCCCC
Confidence 577888876542 122223344566665543
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.3e-12 Score=141.19 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=153.0
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEE-EeCCC--eE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDM--FI 81 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i 81 (871)
.+.+..+.+.+.+.+|+|||+.|+..+. +..|.+||+.+++... +....+...+..|+|||+.|+. .+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 3456667788999999999999998764 3469999998876543 3334455668899999998864 44555 69
Q ss_pred EEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-CCe--EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
.+||+.+++. ..+..+.......+|+|+|++|+.++. +|. |.++|+.++. ..... .+.......+|+| +++.+
T Consensus 275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt-~~g~~~~~~~~Sp-DG~~I 350 (433)
T PRK04922 275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLT-FQGNYNARASVSP-DGKKI 350 (433)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEee-cCCCCccCEEECC-CCCEE
Confidence 9999988765 344555555678899999999887764 444 7777777663 32222 2334455789999 77777
Q ss_pred EEEECCC---cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC---CCeEEEEECCCCceEEEecCcccCe
Q 002881 159 ASASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNV 232 (871)
Q Consensus 159 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v 232 (871)
+..+.++ .|.+||+.+++.. .+. +........|+|+++ +++..+. .+.|.+++.. +.....+..+.+.+
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~--~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~ 425 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS--MVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEV 425 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEEcccCCCCC
Confidence 7655433 6999999877644 333 222345678999988 4554443 3468888885 55556665566677
Q ss_pred EEEEEcC
Q 002881 233 SAVCFHP 239 (871)
Q Consensus 233 ~~i~~~p 239 (871)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 7888887
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.3e-12 Score=137.91 Aligned_cols=222 Identities=11% Similarity=0.030 Sum_probs=154.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEE-EeCCC--eE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDM--FI 81 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i 81 (871)
.+.++.|.+.+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|||+.|+. .+.++ .|
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3456778889999999999999988764 468999999888653 45556667888999999998864 44454 47
Q ss_pred EEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
.+||+.++.. ..+..+........|+|+|+.|+..+. + ..|.++|+.++ ...... .+...+....|+| +++.+
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~~lt-~~~~~~~~~~~Sp-dG~~i 348 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-NPRRIS-FGGGRYSTPVWSP-RGDLI 348 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-CeEEee-cCCCcccCeEECC-CCCEE
Confidence 7889887665 445556666778999999999887764 3 36888898776 333332 2344567788999 67777
Q ss_pred EEEECC---CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC-C-----CeEEEEECCCCceEEEecCcc
Q 002881 159 ASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D-----HTAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 159 ~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~-d-----g~i~v~d~~~~~~~~~~~~~~ 229 (871)
+..+.+ ..|.+||+.++. ...+. ....+....|+|+++ .|+..+. . ..+.++|+..+.. ..+. ..
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~ 422 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TP 422 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCce-EEcc-CC
Confidence 766543 368888886544 33332 223467789999987 4444332 2 3688888875544 4444 24
Q ss_pred cCeEEEEEcCC
Q 002881 230 HNVSAVCFHPE 240 (871)
Q Consensus 230 ~~v~~i~~~p~ 240 (871)
+.+...+|+|-
T Consensus 423 ~~~~~p~Wsp~ 433 (435)
T PRK05137 423 GDASDPAWSPL 433 (435)
T ss_pred CCccCcccCCC
Confidence 45677788873
No 245
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3.1e-11 Score=122.78 Aligned_cols=306 Identities=16% Similarity=0.230 Sum_probs=195.7
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEE
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWD 127 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~iwd 127 (871)
.-+-+.|||.|.+|++--..| |.+|--.+...++.|. |. .|..+.|||..+||+|-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 356789999999999988877 7799766666666665 55 4899999999999998653 25799999
Q ss_pred CCCCceEEEEeec--CCcc-eEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEE
Q 002881 128 WEKGWMCTQIFEG--HSHY-VMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (871)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~-v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~ 204 (871)
+.+| .....+.. .... -.-..||. ++.+++.-.. .+|.||+..+..+.-.-.-.-.+|....|+|.+. +|+-
T Consensus 289 I~tG-~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~--llAY 363 (698)
T KOG2314|consen 289 IATG-LLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN--LLAY 363 (698)
T ss_pred cccc-chhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc--eEEE
Confidence 9999 45554443 1222 23467888 7888887666 5789999766443322233446788889999865 4543
Q ss_pred EeC-----CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCe-EEEEEe
Q 002881 205 GSD-----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS----------EDGTVRIWHATTYR-LENTLN 268 (871)
Q Consensus 205 ~~~-----dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~----------~dg~v~iwd~~~~~-~~~~~~ 268 (871)
=.. -..+.+..+.+++.+++..-+.-.=..+-|-.+|.+|+.-- .-..+.|+.++... ++..+.
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve 443 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE 443 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence 222 23577777777777777665554445577888888887532 11235555555433 222332
Q ss_pred cCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeee
Q 002881 269 YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKE 348 (871)
Q Consensus 269 ~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (871)
. ...|...+|-|.|+.+++-+.+-. ...++.|.+... +.. +..++.
T Consensus 444 l-ke~vi~FaWEP~gdkF~vi~g~~~------------------------k~tvsfY~~e~~--------~~~-~~lVk~ 489 (698)
T KOG2314|consen 444 L-KESVIAFAWEPHGDKFAVISGNTV------------------------KNTVSFYAVETN--------IKK-PSLVKE 489 (698)
T ss_pred c-chheeeeeeccCCCeEEEEEcccc------------------------ccceeEEEeecC--------CCc-hhhhhh
Confidence 2 367889999999998887543321 011122222110 000 000111
Q ss_pred cCccccCCceEEECCCCCEEEEEc----CCcEEEEEeeccc-----ccCcCceeEEEEecCCcEEEEec
Q 002881 349 LGTCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES 408 (871)
Q Consensus 349 ~~~~~~~~~~~~~s~~g~~lav~~----~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~ 408 (871)
+.. ...+.+.|+|.|+++++++ .|.+.+|+...-. .......+.+-|.|.|+|+++.+
T Consensus 490 ~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 490 LDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 111 2346899999999999887 6788888766321 12223457889999999998766
No 246
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.2e-11 Score=128.50 Aligned_cols=441 Identities=12% Similarity=0.139 Sum_probs=267.8
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCC------------CEEEEEeCCCeEEEE
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK------------QWVVAGADDMFIRVY 84 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~i~iw 84 (871)
.-.+++|+|.| ++|.|+ ...|.+-|..+-+.++.++.|...|+.+.|.|-. -.||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 46789999988 577776 5679999999999999999999999999998832 256777789999999
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcCC---C-CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHPT---L-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~~---~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
|...+..+..+..|.+++..++|-+. . ..|+.-.....+.+|+..+|...-.. .-......|+.+.|-+...+..
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-DYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-ccCCcceeeeeeCCCCcceEEE
Confidence 99999888889999999999999763 3 45666677789999999998443333 2233456779999988888888
Q ss_pred EECCCcEEEEECCCCC----C--eEEE-ecCCC-------------------C------eeEEEEeecCCcCEEEEEeCC
Q 002881 161 ASLDRTIKIWNLGSPD----P--NFTL-DAHQK-------------------G------VNCVDYFTGGDKPYLITGSDD 208 (871)
Q Consensus 161 ~~~dg~i~i~d~~~~~----~--~~~~-~~~~~-------------------~------i~~i~~~~~~~~~~l~~~~~d 208 (871)
.+..|.+.+.+.-..+ + ...+ ..|.. . ...++|+|.-++ ++.....
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn--~lfi~~p 251 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN--ILFITFP 251 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc--eEEEEec
Confidence 8888888887753221 1 1111 11111 0 012345665554 3334446
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCC----------------eEEEEEecC
Q 002881 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL--PIIITGSEDGTVRIWHATTY----------------RLENTLNYG 270 (871)
Q Consensus 209 g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~~~dg~v~iwd~~~~----------------~~~~~~~~~ 270 (871)
+.+.++|++-..++..+.-..+.+.-+.|-|++ ..+++...||.+.+|-.+.. .....+...
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m 331 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM 331 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeec
Confidence 779999999888888777677777777887765 48999999999999965431 111111111
Q ss_pred -CccEEEEEEeeC-CCeEEEEEcCCeEEEecCCCcceE------------EEeCCCcEEEEeecceEEEEEeecCcceec
Q 002881 271 -LERVWAIGYMKS-SRRIVIGYDEGTIMVKIGREEPVA------------SMDNSGKIIWAKHNEIQTVNIKSVGADYEV 336 (871)
Q Consensus 271 -~~~i~~i~~~~~-~~~l~~g~~dg~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (871)
.-++......|. .+.+++-..+|...+|.-....+. .++.++...... +...+.++... ..
T Consensus 332 ~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~--k~~l~~LS~dg---~h 406 (1062)
T KOG1912|consen 332 EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVG--KTSLISLSDDG---SH 406 (1062)
T ss_pred hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehh--hccccchhhcC---CC
Confidence 112233334454 445556666777777743322111 111111111110 11111111100 01
Q ss_pred cCCCeeeeeeeecCccccCCceEEECCCCC-------EEEEEc-CCcEEEEEeeccc-----ccCcCceeEEEEecCCcE
Q 002881 337 TDGERLPLAVKELGTCDLYPQSLKHNPNGR-------FVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEY 403 (871)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-------~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~ 403 (871)
+.|.... +.... ..++...--|.|+ ++|+|+ .|++.++++.... ..+...+.++.|.....+
T Consensus 407 ~sGs~~~-~~~p~----p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ssl 481 (1062)
T KOG1912|consen 407 SSGSTCV-RMRPM----PELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSL 481 (1062)
T ss_pred CCCceee-ecccC----cccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeE
Confidence 1111110 00000 0111222223222 577887 7999999876542 345567788888766665
Q ss_pred EEEecC----------CeEEEeecccccceeeec----Cccceee---e-cCcEEEEEeCC-eEEEEeccCCcEEEEEE-
Q 002881 404 AVRESS----------SKIKIFSKNFQEKRSVRP----TFSAERI---Y-GGTLLAMCSND-FICFYDWAECRLIRRID- 463 (871)
Q Consensus 404 ~~~~~~----------~~i~i~~~~~~~~~~~~~----~~s~~~i---~-~~~~La~~~~~-~v~~~d~~~~~~~~~~~- 463 (871)
+..+.+ +.+.+-++.....+.++. .-+|-.+ . .+++|++.-.+ -+.+||+.+..+++...
T Consensus 482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~ 561 (1062)
T KOG1912|consen 482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL 561 (1062)
T ss_pred EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh
Confidence 544321 234454443322222221 1122111 1 58899999888 89999998877665433
Q ss_pred -c-ceeEEEEc
Q 002881 464 -V-TVKNLYWA 472 (871)
Q Consensus 464 -~-~i~~i~~s 472 (871)
. .++.+.|+
T Consensus 562 a~P~it~leWs 572 (1062)
T KOG1912|consen 562 ALPLITVLEWS 572 (1062)
T ss_pred cCCcEEEEeec
Confidence 2 37888888
No 247
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=1.7e-12 Score=131.31 Aligned_cols=218 Identities=17% Similarity=0.299 Sum_probs=156.1
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeE----EeeecCCCEEEEEE-----eCCCCEEEEEeCCCeEEEEECCC
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK----SFEVTELPVRSAKF-----VARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
++...++-.|.+|...- ...+.+|++..+.... ...-.....+|=+| .|.+--+.+|-.-|.|.+.+...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44555555666666543 4468888887532221 11111122334444 34566788888889999988765
Q ss_pred CcEEEEEc----cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC--------------c--eE-----------EE
Q 002881 89 MDKVKVFE----AHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKG--------------W--MC-----------TQ 136 (871)
Q Consensus 89 ~~~~~~~~----~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------~--~~-----------~~ 136 (871)
.+..+.+. .....++|+.|-|.+. .++++-.+|.+.+||..-. . .+ ..
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~ 284 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA 284 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence 32222121 2346799999999654 5666778999999975421 0 00 00
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 137 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
...--.+.|...+|+| ++.+|++.+.||.++|||..+.+....++..-+...|++|+|+|+ ||++|++|..|.||++
T Consensus 285 ~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSF 361 (636)
T ss_pred eeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEe
Confidence 0111234688899999 999999999999999999998887777777788999999999998 9999999999999999
Q ss_pred CCCceEEEecCcccCeEEEEEcC
Q 002881 217 QTKSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~p 239 (871)
..++.+..=++|...|+.++|.|
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEeccccccceeeEeecc
Confidence 99999999999999999999984
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=3.2e-12 Score=122.48 Aligned_cols=211 Identities=21% Similarity=0.353 Sum_probs=160.9
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCC-CCceeEEee-ecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQ-SQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFI 81 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 81 (871)
++.+.+.++||.+.|.+...-|..+-+.+.+.|.+++||--. .++.-..+. ....+++++.++++...|++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 456788999999999999999988889999999999999633 333222222 246789999999999999999999999
Q ss_pred EEEECC----CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--------------------------
Q 002881 82 RVYNYN----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG-------------------------- 131 (871)
Q Consensus 82 ~iw~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------------- 131 (871)
.-+.+. .....+....|...+..+.|+-....+++.+.|..+.---.+.+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 888653 33445555678888888877766666666666544321111111
Q ss_pred --------------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-eEEEecCCCCeeEEEEeec
Q 002881 132 --------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTG 196 (871)
Q Consensus 132 --------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~ 196 (871)
-.....+.+|...+.+++|.| ....+.+|..|..+.+||+...+- ...+.+|...|..+.+.+.
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 133445678999999999999 889999999999999999976553 3456788888888887766
Q ss_pred CCcCEEEEEeCCCeEEEEECC
Q 002881 197 GDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 197 ~~~~~l~~~~~dg~i~v~d~~ 217 (871)
.. .+++++.||.|.+|+.+
T Consensus 252 t~--~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 252 TR--QLISCGEDGGIVVWNMN 270 (404)
T ss_pred he--eeeeccCCCeEEEEecc
Confidence 65 59999999999999974
No 249
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.47 E-value=2.1e-12 Score=130.69 Aligned_cols=218 Identities=17% Similarity=0.242 Sum_probs=162.6
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----EEEEccCCCCeEEEEEc-----CCCCEEEEEECCCeEEEEECCC
Q 002881 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVFEAHTDYIRCVAVH-----PTLPYVLSSSDDMLIKLWDWEK 130 (871)
Q Consensus 60 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~i~~i~~~-----~~~~~l~~~~~dg~i~iwd~~~ 130 (871)
++...++-.|++|+..- ...+.+|+++.+.. +....-.....+|-+|+ |.+--+++|-.-|.+.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44555555677766543 24588888774321 11111111223445553 3455688888889999998765
Q ss_pred CceEEEEee----cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC----------------------------CCCe
Q 002881 131 GWMCTQIFE----GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS----------------------------PDPN 178 (871)
Q Consensus 131 ~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~----------------------------~~~~ 178 (871)
. ...+.+. -.+..++|+.|-|.+...|+++..+|.+.+||..- ..++
T Consensus 205 ~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 205 F-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred h-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 3 2222221 12467999999998889999999999999997531 0123
Q ss_pred EEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 179 ~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
..+.-..+.|+..+|+|+|. +|++.+.||.++|||+.+.+.+-.++...+...|++|+|||++|++|++|.-|.||.+
T Consensus 284 ~~w~~~~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGK--YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ceeEeccccccceeEcCCCc--eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 33333456788999999887 8999999999999999988887777777889999999999999999999999999999
Q ss_pred CCCeEEEEEecCCccEEEEEEee
Q 002881 259 TTYRLENTLNYGLERVWAIGYMK 281 (871)
Q Consensus 259 ~~~~~~~~~~~~~~~i~~i~~~~ 281 (871)
...+.+..-+.|...|..++|.|
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEeccccccceeeEeecc
Confidence 99999999999999999999987
No 250
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.46 E-value=4.6e-09 Score=122.86 Aligned_cols=277 Identities=13% Similarity=0.161 Sum_probs=187.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEE----eCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC--
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIW----NYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN-- 87 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-- 87 (871)
..+.|.++.+-++...++++..+|.|.+. +..+.. +...-.-+..|.+++||||+..|+..+.++++.+.+..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 45789999999999999999999999999 544332 23333456789999999999999999999998887531
Q ss_pred -------------C--------CcEEEEEcc------------------------CCCCeEEEEEcCCCCEEEEEEC---
Q 002881 88 -------------T--------MDKVKVFEA------------------------HTDYIRCVAVHPTLPYVLSSSD--- 119 (871)
Q Consensus 88 -------------~--------~~~~~~~~~------------------------~~~~i~~i~~~~~~~~l~~~~~--- 119 (871)
. |++...|.+ +.+.-..|+|-.||.++++.+-
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 0 111111110 2334567999999999998774
Q ss_pred C---CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC---CCcEEEEECCCCCCeEEE----ecCCCCee
Q 002881 120 D---MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLGSPDPNFTL----DAHQKGVN 189 (871)
Q Consensus 120 d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~----~~~~~~i~ 189 (871)
. ..++||+-+ | .+..+...-.+--.+++|.| .++.+++... ...|.+|.-++ -....+ ......|.
T Consensus 233 ~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred CCceeEEEEECCC-c-eEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceee
Confidence 2 579999966 4 45555444445456789999 7888888765 34577777443 222222 23456789
Q ss_pred EEEEeecCCcCEEEEEeCCCeEEEEECCCCce--EEEecC-cccCeEEEEEcCCCC-EEEEEECCCcEEEEeCC----C-
Q 002881 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTLEG-HTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT----T- 260 (871)
Q Consensus 190 ~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~-~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~----~- 260 (871)
.+.|+++++ +|++...|. |.+|-..+..- .+.+.. ....+..+.|+|..+ .|...+.+|.+..++.. .
T Consensus 309 ~l~Wn~ds~--iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 309 ELAWNSDSE--ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred EEEECCCCC--EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 999999988 677766554 99998876542 222221 223355599999654 46666665666555421 1
Q ss_pred ---------------CeEE----------------EEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 261 ---------------YRLE----------------NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 261 ---------------~~~~----------------~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
|..+ ..+.. ...|.+++|++++..+++-..||.+.++.
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1111 11111 25788999999999899999999988875
No 251
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=1.5e-10 Score=117.12 Aligned_cols=243 Identities=14% Similarity=0.171 Sum_probs=165.7
Q ss_pred EEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 002881 40 CIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119 (871)
Q Consensus 40 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 119 (871)
.+|+..+......+....-++....|||.|.+|++....| |.+|....+..+..+. | ..|..+.|+|.+++|.+=+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeecc
Confidence 3455555444445555667899999999999999887765 8899988877666665 3 35899999999999997543
Q ss_pred C---------------CeEEEEECCCCceEEEEeecCCcc--eE-EEEEecCCCCEEEEEECCCcEEEEECCCCCC-eEE
Q 002881 120 D---------------MLIKLWDWEKGWMCTQIFEGHSHY--VM-QVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFT 180 (871)
Q Consensus 120 d---------------g~i~iwd~~~~~~~~~~~~~~~~~--v~-~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~ 180 (871)
. ..+.+||+.++ .+...+.....+ .+ -+.|+- ++++++=. ....++|+++ ++.. ...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCc
Confidence 3 35999999998 666666555444 33 567776 55555443 3457999997 3221 111
Q ss_pred Ee-cCCCCeeEEEEeecCCcCEEEE-----EeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE------
Q 002881 181 LD-AHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS------ 248 (871)
Q Consensus 181 ~~-~~~~~i~~i~~~~~~~~~~l~~-----~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~------ 248 (871)
+. ....+|....|+|.++...|+. .+..+.+++|.+..+..+.+..-....-..+.|++.|+++++--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 11 1236788889999876656554 45678999999987777665544444446788999998776432
Q ss_pred -----CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 249 -----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 249 -----~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
....++++++. ++.+.....-.++|...+|.|.++.+++.+
T Consensus 248 nKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 248 NKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ccceeccceEEEEeec-ccccceeccccccceeeeecccCCceeEEe
Confidence 12457788866 333333324458999999999998887644
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=6.4e-12 Score=122.65 Aligned_cols=219 Identities=8% Similarity=0.123 Sum_probs=166.3
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc----eeEEeeecCCCEEEEEEeCCCCEE-EEEeCC--CeEEEEECC
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVARKQWV-VAGADD--MFIRVYNYN 87 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d--g~i~iw~~~ 87 (871)
+.+|..+... ..+|+++..+|.+.+|..+.+. ....+..+ .++..+.-++....| ++|+.. ..+.+||++
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 3344444433 2357788889999999987443 22223323 456677777765555 558888 899999999
Q ss_pred CCcEEEEEccC-C--------CCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC
Q 002881 88 TMDKVKVFEAH-T--------DYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (871)
Q Consensus 88 ~~~~~~~~~~~-~--------~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 156 (871)
+.+++..-+.- + -.++.+.|-+. ...|++++.-+.+++||.+.++.+...+.-...+++++...| +++
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn 260 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGN 260 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCc
Confidence 88655543321 1 13677888887 778999999999999999998888888888889999999999 899
Q ss_pred EEEEEECCCcEEEEECCCCCCeEE-EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEE
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAV 235 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i 235 (871)
.+++|..-|.+..||++++..... +.+..+.|.++..+|... ++++++-|+.|+|+|+++.+++.... -...++++
T Consensus 261 ~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~i 337 (412)
T KOG3881|consen 261 FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFI 337 (412)
T ss_pred EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc--eEEeeccceeEEEeecccchhhhhhh-hhccccEE
Confidence 999999999999999999887665 788889999999998766 99999999999999999876654443 23345555
Q ss_pred EEcCC
Q 002881 236 CFHPE 240 (871)
Q Consensus 236 ~~~p~ 240 (871)
-+.++
T Consensus 338 l~~~~ 342 (412)
T KOG3881|consen 338 LLRDD 342 (412)
T ss_pred EecCC
Confidence 55443
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=1.3e-11 Score=117.71 Aligned_cols=150 Identities=17% Similarity=0.292 Sum_probs=110.0
Q ss_pred EEEEEEcCCCCEEEEEEc----------CCeEEEEeCC-CCceeEEeee-cCCCEEEEEEeCCCCEEEEE--eCCCeEEE
Q 002881 18 VKSVDLHPSEPWILASLY----------SGTVCIWNYQ-SQTMAKSFEV-TELPVRSAKFVARKQWVVAG--ADDMFIRV 83 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~----------dg~v~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~i 83 (871)
=..+.|+|+|.+|++-.. -|...+|-++ .+.....+.. ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 356889999998876433 1345555552 2344455544 35579999999999998665 35679999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
||.+ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++. ...... +...++.++|+| ++++|++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~--~~~~~t~~~WsP-dGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTF--EHSDATDVEWSP-DGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeecc--ccCcEEEEEEcC-CCCEEEE
Confidence 9996 66666664 467789999999999999875 367999999976 333333 234578999999 8889888
Q ss_pred EEC------CCcEEEEECCC
Q 002881 161 ASL------DRTIKIWNLGS 174 (871)
Q Consensus 161 ~~~------dg~i~i~d~~~ 174 (871)
++. |..++||+..+
T Consensus 161 a~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEeccceeccccEEEEEecC
Confidence 875 67889999853
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=7.5e-10 Score=121.81 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=156.3
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCC----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
+.|..-.+.-+...++.++.++.+.+||...+.....+..... +..-+.++++.-++++|+.-+.|.+|.....++
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3444455555677889999999999999888776665553322 233345577778899999999999999884444
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
...+.+|.+.|..+.|+.+|.+++++|+|.++++|++++........-+|+.+|..+++.| . .+++++.|.+.++|+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWG 244 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEe
Confidence 4458899999999999999999999999999999999998666657778999999999998 3 999999999999997
Q ss_pred CCCCCCeEEEecCC-CCeeEEEEeecCCcCEEEEEeCCCeEEEEECC
Q 002881 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 172 ~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~ 217 (871)
.+..+ ...+..|. ..+..+...++.. .+++++.|+.+++|++.
T Consensus 245 ~~~~~-l~~y~~h~g~~iw~~~~~~~~~--~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 245 VNGTQ-LEVYDEHSGKGIWKIAVPIGVI--IKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cccce-ehhhhhhhhcceeEEEEcCCce--EEEeeccCcchhhhhhh
Confidence 75433 33555554 5688888877655 79999999999999975
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.43 E-value=7.5e-09 Score=103.75 Aligned_cols=180 Identities=14% Similarity=0.087 Sum_probs=125.9
Q ss_pred CCCCEEEEEECCCeEEEEECCCCceEEEEeec------CC-----cceEEEE-EecCCCCEEEEEECCCcEEEEECCCCC
Q 002881 109 PTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG------HS-----HYVMQVT-FNPKDTNTFASASLDRTIKIWNLGSPD 176 (871)
Q Consensus 109 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~~v~~~~-~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (871)
.||+.++. +..|.|.+||..+. .+...--+ .. .+..-+. |++.++++++..|. |...+.+...+-
T Consensus 276 sDGkrIvF-q~~GdIylydP~td-~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETD-SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcC-cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 35555543 34567888888776 22222111 00 0111111 44446778888775 666666654443
Q ss_pred CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC-eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 177 ~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
.+. -++.+.|.-..+..+++ -++.|..|| .+-++|..+++ +..+...-+.|.++..+|+|++++++.....+.+
T Consensus 353 ~iq--v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 353 SIQ--VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eEE--cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 222 25667788878777776 488888888 99999998655 4556667789999999999999999998889999
Q ss_pred EeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEE
Q 002881 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (871)
Q Consensus 256 wd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~ 296 (871)
.|+.++.....-+...+-|+.+.|+|+++++|-+.-+|.+.
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceee
Confidence 99999986655555567899999999999999998887664
No 256
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=3.6e-11 Score=114.66 Aligned_cols=156 Identities=18% Similarity=0.321 Sum_probs=111.3
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCCCceEEEEe-ecCCcceEEEEEecCCCCEEEEE--ECCCcEEE
Q 002881 103 RCVAVHPTLPYVLSSSD----------DMLIKLWDWEKGWMCTQIF-EGHSHYVMQVTFNPKDTNTFASA--SLDRTIKI 169 (871)
Q Consensus 103 ~~i~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~i 169 (871)
..+.|+|+|.+|++-.. -|...+|.++........+ ....++|.+++|+| +++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 45889999988775433 2345555553322223333 23445799999999 66665544 45779999
Q ss_pred EECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC---CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEE
Q 002881 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246 (871)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 246 (871)
||++ .+++..+ ....++.+.|+|+|+ ++++++. .|.|.+||.++.+.+.... | ..++.++|+|+|++|++
T Consensus 88 yd~~-~~~i~~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEE
Confidence 9996 5555554 356778999999998 7777764 4679999999888887765 3 34789999999999998
Q ss_pred EEC------CCcEEEEeCCCCeEEEEE
Q 002881 247 GSE------DGTVRIWHATTYRLENTL 267 (871)
Q Consensus 247 ~~~------dg~v~iwd~~~~~~~~~~ 267 (871)
++. |+.++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 874 6789999964 6665543
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=2e-10 Score=126.53 Aligned_cols=232 Identities=16% Similarity=0.118 Sum_probs=153.4
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCE
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
..|.++|...+ ..+.+..+...+....|+|||++|+.++.+ ..|++|++.+++.... ..+...+.+++|+|+|+.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 36888887544 345555567789999999999999987653 4899999998765433 345566778999999987
Q ss_pred EEEE-ECCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCeEEEecCCCC
Q 002881 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (871)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~ 187 (871)
|+.. +.++ .|++||+.++ .... +..+........|+| +++.++..+. ++ .|.++|+.+++. ..+..+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~-~~~~-l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGK-QLTR-LTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCC-CEEE-CCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 7654 4443 5888998876 3333 333444456778999 6776665544 33 578888876653 344445556
Q ss_pred eeEEEEeecCCcCEEEEEeCCC---eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCC---cEEEEeCCCC
Q 002881 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg---~v~iwd~~~~ 261 (871)
.....|+|+++ +++.++.++ .|.+||+.++... .+... .......|+|+++.|+..+.++ .+.+.+. ++
T Consensus 324 ~~~~~~spdg~--~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g 398 (417)
T TIGR02800 324 NASPSWSPDGD--LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DG 398 (417)
T ss_pred ccCeEECCCCC--EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CC
Confidence 67889999887 577666655 7899998875543 33222 2335568999999888777654 3555553 34
Q ss_pred eEEEEEecCCccEEEEEE
Q 002881 262 RLENTLNYGLERVWAIGY 279 (871)
Q Consensus 262 ~~~~~~~~~~~~i~~i~~ 279 (871)
+....+..+.+.+..++|
T Consensus 399 ~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 399 RFRARLPLGNGDVREPAW 416 (417)
T ss_pred ceeeECCCCCCCcCCCCC
Confidence 444545444444444444
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=9.9e-11 Score=112.29 Aligned_cols=239 Identities=16% Similarity=0.229 Sum_probs=167.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEccCC------------CCeEEEEEcCCCC--EEEEE
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~i~~i~~~~~~~--~l~~~ 117 (871)
..-+.++.|...|.+|++|+.+|.|.++.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568899999999999999999999999654322 233444443 3578899998754 57778
Q ss_pred ECCCeEEEEECCCCceEE----------------------------------EE-eecCCcceEEEEEecCCCCEEEEEE
Q 002881 118 SDDMLIKLWDWEKGWMCT----------------------------------QI-FEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 118 ~~dg~i~iwd~~~~~~~~----------------------------------~~-~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
+.|.+|++|.+....... ++ -..|+-.|.++.++. +...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence 889999999876321110 01 124677789999997 66666665
Q ss_pred CCCcEEEEECCCCCCeEEE---ecC-----CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceE----EEe-----
Q 002881 163 LDRTIKIWNLGSPDPNFTL---DAH-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV----QTL----- 225 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~---~~~-----~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~----- 225 (871)
.|-.|.+|.+.-....+.+ +++ ..-|++..|+|..-. +++-.++.|.|++.|++..... ..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4788999998654333322 222 234778889887543 8888899999999999843211 011
Q ss_pred -------cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEEecCC------------cc---EEEEEEeeC
Q 002881 226 -------EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT-TYRLENTLNYGL------------ER---VWAIGYMKS 282 (871)
Q Consensus 226 -------~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~------------~~---i~~i~~~~~ 282 (871)
..--..|+.+.|+++|+++++-.. -+|++||++ ..+++.+++.|. +. -..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 111235888999999999998765 589999984 345566655442 12 235889999
Q ss_pred CCeEEEEEcCCeEEEec
Q 002881 283 SRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 283 ~~~l~~g~~dg~i~i~~ 299 (871)
+..+.+|+-+...++..
T Consensus 341 ~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cceEecccccceEEEec
Confidence 99999999999888864
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.7e-10 Score=125.43 Aligned_cols=234 Identities=15% Similarity=0.065 Sum_probs=151.9
Q ss_pred eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEE
Q 002881 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (871)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 114 (871)
.|.++|.+.+. .+.+..+..++....|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 48888876554 34555577789999999999999877643 479999999886543 33333445678999999988
Q ss_pred EE-EECCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCC--cEEEEECCCCCCeEEEecCCCCe
Q 002881 115 LS-SSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDR--TIKIWNLGSPDPNFTLDAHQKGV 188 (871)
Q Consensus 115 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~i 188 (871)
+. .+.+| .|.+||+.++ .... +..+........|+| +++.++..+ .+| .|.++++.+++... +.......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~-~~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASR-QLSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCC-CeEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc
Confidence 74 44444 6888899887 3333 344555566789999 666555544 333 57777887766432 22222233
Q ss_pred eEEEEeecCCcCEEEEEeC-CC--eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCe
Q 002881 189 NCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYR 262 (871)
Q Consensus 189 ~~i~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d---g~v~iwd~~~~~ 262 (871)
....|+|+++ .++..+. ++ .|.++|+.+++... +.. ........|+|+|+.++..+.+ ..+.+++.. +.
T Consensus 334 ~~~~~Spdg~--~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~ 408 (430)
T PRK00178 334 ARPRLSADGK--TLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GR 408 (430)
T ss_pred cceEECCCCC--EEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 4578999988 4554443 33 58889998776533 322 1222356899999988876643 346777764 44
Q ss_pred EEEEEecCCccEEEEEEeeC
Q 002881 263 LENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 263 ~~~~~~~~~~~i~~i~~~~~ 282 (871)
....+..+.+.+...+|+|-
T Consensus 409 ~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 44445545556677777764
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.8e-10 Score=124.48 Aligned_cols=235 Identities=15% Similarity=0.077 Sum_probs=149.2
Q ss_pred eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEE
Q 002881 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (871)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 114 (871)
.+.++|...... +.+..+..++.+..|+|||++|+..+.+ ..|.+||+.+++.... ....+......|+|+|+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 677778655433 4555567789999999999999876542 3688999988765332 2223334578999999988
Q ss_pred EE-EECCCe--EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCC--cEEEEECCCCCCeEEEecCCCCe
Q 002881 115 LS-SSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDR--TIKIWNLGSPDPNFTLDAHQKGV 188 (871)
Q Consensus 115 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~i 188 (871)
+. .+.+|. |.++|+.++ .... +..+........|+| +++.++..+ .++ .|.++|+.+++... +.......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg-~~~~-lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATK-ALTR-ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence 75 455664 788888876 3333 334445567889999 666655544 344 46667777665432 32222223
Q ss_pred eEEEEeecCCcCEEEEEeCCC--eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeE
Q 002881 189 NCVDYFTGGDKPYLITGSDDH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-G--TVRIWHATTYRL 263 (871)
Q Consensus 189 ~~i~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d-g--~v~iwd~~~~~~ 263 (871)
....|+|+++. ++++...++ .|.++|+.++.... +... .......|+|+|+.|+..+.+ | .+.+++. +|+.
T Consensus 353 ~~~~~SpDG~~-l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~ 428 (448)
T PRK04792 353 LGGSITPDGRS-MIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRF 428 (448)
T ss_pred cCeeECCCCCE-EEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCc
Confidence 45689999874 333333344 46667887776432 3222 122345899999987766543 3 3677775 5666
Q ss_pred EEEEecCCccEEEEEEeeC
Q 002881 264 ENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 264 ~~~~~~~~~~i~~i~~~~~ 282 (871)
...+..+.+.+...+|+|-
T Consensus 429 ~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 429 KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred eEECcCCCCCcCCCccCCC
Confidence 6666655566777888763
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=1.1e-08 Score=108.39 Aligned_cols=266 Identities=11% Similarity=0.173 Sum_probs=176.7
Q ss_pred EEEEEcC----CeEEEEeC--CCCceeEEee-ecCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCC--c--EEEE
Q 002881 30 ILASLYS----GTVCIWNY--QSQTMAKSFE-VTELPVRSAKFVARKQWVVAGAD----DMFIRVYNYNTM--D--KVKV 94 (871)
Q Consensus 30 la~~~~d----g~v~iwd~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~ 94 (871)
+++|++. +.|.+|++ +++++...-. ........++++|++++|.+... +|.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5667765 68999887 4554432221 23456778999999999999877 579999988764 2 2333
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEE---ee----------cCCcceEEEEEecCCCCEEEE
Q 002881 95 FEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI---FE----------GHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~----------~~~~~v~~~~~~p~~~~~l~~ 160 (871)
..........++++|++++|+++.. +|.|.++++.....+... .. .......++.++| +++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEE
Confidence 3334556778999999999999874 899999999874233322 11 1234578899999 6776666
Q ss_pred EEC-CCcEEEEECCCCCC-e---EEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC--CCc--eEEEecCc--
Q 002881 161 ASL-DRTIKIWNLGSPDP-N---FTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKS--CVQTLEGH-- 228 (871)
Q Consensus 161 ~~~-dg~i~i~d~~~~~~-~---~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~--~~~--~~~~~~~~-- 228 (871)
... ...|.+|++..... + ..+ .........+.|+|+++. +.++...++.|.++++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-EEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 543 46799999976652 2 122 234466789999998874 44556668899999988 343 22222211
Q ss_pred ----ccCeEEEEEcCCCCEEEEEE-CCCcEEEEeCC--CCe--EEEEEecCCccEEEEEEeeCCCeEEEEEc-CCeEEE
Q 002881 229 ----THNVSAVCFHPELPIIITGS-EDGTVRIWHAT--TYR--LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMV 297 (871)
Q Consensus 229 ----~~~v~~i~~~p~~~~l~~~~-~dg~v~iwd~~--~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~g~~-dg~i~i 297 (871)
......+.++|+|++|.++. ..+.|.+|++. +++ .+..+.......+.++++|+|++|+++.. ++.|.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 12578899999999887765 45689999983 343 44455555456899999999999998874 455555
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.3e-10 Score=126.06 Aligned_cols=222 Identities=13% Similarity=0.035 Sum_probs=147.0
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~ 82 (871)
+.+..+.+.+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455677889999999999999876643 369999998886543 33334456678999999988754 4444 688
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
+||+.+++.. .+..+........|+|+|+.|+..+. + ..|.++++.++. ...... .........|+| +++.++
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~-~~~~~~~~~~Sp-dg~~i~ 346 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTF-VGNYNARPRLSA-DGKTLV 346 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeec-CCCCccceEECC-CCCEEE
Confidence 8899887654 34445556677899999998877664 3 367888887763 333221 123344678999 667776
Q ss_pred EEEC-CC--cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe-CC--CeEEEEECCCCceEEEecCcccCeE
Q 002881 160 SASL-DR--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-DD--HTAKVWDYQTKSCVQTLEGHTHNVS 233 (871)
Q Consensus 160 ~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~-~d--g~i~v~d~~~~~~~~~~~~~~~~v~ 233 (871)
..+. ++ .|.++|+.+++.. .+.. ........|+|++. .++..+ .+ ..+.+++.. +.....+..+.+.+.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~--~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGT--MLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred EEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 6654 33 5888998876543 3322 22223568999987 444443 33 357777775 444445555556677
Q ss_pred EEEEcCC
Q 002881 234 AVCFHPE 240 (871)
Q Consensus 234 ~i~~~p~ 240 (871)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 7888874
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.3e-10 Score=121.89 Aligned_cols=227 Identities=11% Similarity=0.075 Sum_probs=143.0
Q ss_pred hhcccCCCCEEEEEEcCCCCEEE---EEEcC--CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC-CC---
Q 002881 9 RKLAQRSERVKSVDLHPSEPWIL---ASLYS--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DM--- 79 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la---~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--- 79 (871)
+.++...+.+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+......|+|||+.|+..+. +|
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 34555566778889999998533 33333 358888988776543 3334455567899999999987654 22
Q ss_pred -eEEEEECCCC---cEEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE--ECCCCceEEEEeecCCcceEEEEEec
Q 002881 80 -FIRVYNYNTM---DKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLW--DWEKGWMCTQIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 80 -~i~iw~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~p 152 (871)
.+..|++.++ +.......+.......+|+|||+.|+..+ .+|...+| ++.........+..+...+....|+|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 3444776642 33333333333456789999999888766 45644444 55422122333344445677899999
Q ss_pred CCCCEEEEEECC---CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEE-EEeC--CCeEEEEECCCCceEEEec
Q 002881 153 KDTNTFASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI-TGSD--DHTAKVWDYQTKSCVQTLE 226 (871)
Q Consensus 153 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-~~~~--dg~i~v~d~~~~~~~~~~~ 226 (871)
+++.++..+.+ ..|.+||+.+++.. .+......+....|+|+++. |+ ++.. ...|.++|+.+++......
T Consensus 337 -DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~--L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 337 -DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLH--LVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred -CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCEEEeec
Confidence 67777665443 36999999887654 33333445678899999874 44 3332 3578889988766544333
Q ss_pred CcccCeEEEEEcCCC
Q 002881 227 GHTHNVSAVCFHPEL 241 (871)
Q Consensus 227 ~~~~~v~~i~~~p~~ 241 (871)
..+.+...+|+|-.
T Consensus 413 -~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 -GSGEKRFPSWGAFP 426 (428)
T ss_pred -CCCcccCceecCCC
Confidence 44556778888753
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.32 E-value=6e-08 Score=108.94 Aligned_cols=300 Identities=13% Similarity=0.096 Sum_probs=168.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCe
Q 002881 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178 (871)
Q Consensus 99 ~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (871)
.+.|.++.|..++..++.+...|.|.+-|.++. .......-...|.+++|+| ++..++..+..+++.+-+- +..++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEec-cccch
Confidence 368999999999999999999999999988875 3444455667799999999 8999999998888766542 33332
Q ss_pred EEEe-----cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-EEEecCcccCeEEEEEcCCCCEEEEEE----
Q 002881 179 FTLD-----AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGS---- 248 (871)
Q Consensus 179 ~~~~-----~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~i~~~p~~~~l~~~~---- 248 (871)
.... ...+....+-|-.... =+-|+ .|.....+...... ..... ..+.=++|+|-.||.++++..
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeT---qfrgs-~gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKET---QFRGS-EGRQAARQKIEKEKALEQIE-QDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred hccccccccccccccceecccccce---eeecc-hhhhcccccccccccccchh-hccCCceEEEccCCcEEEEEEEecc
Confidence 2111 1112222333322111 11111 11111111111100 00011 122346799999999999843
Q ss_pred CC-CcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc---CCeEEEecCCCcceEEEeCCCcEEEEeecceEE
Q 002881 249 ED-GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD---EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQT 324 (871)
Q Consensus 249 ~d-g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (871)
.+ ..|++||.. |.+-.+-....+.-.+++|.|.|..+++-.. ++.|.++ ..+|-..
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff----------ErNGL~h--------- 278 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF----------ERNGLRH--------- 278 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEE----------ecCCccc---------
Confidence 23 689999966 5544433333344568999999999987433 2333331 2222110
Q ss_pred EEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEE---EcCCc-EEEEEeeccc-----ccCcCceeEE
Q 002881 325 VNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV---CGDGE-YIIYTALAWR-----NRSFGSALEF 395 (871)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav---~~~~~-~~i~~~~~~~-----~~~~~~~~~~ 395 (871)
|+. .+ .....+..+..++|+.++..||+ +..+. +.+|+..+.+ ...+....-+
T Consensus 279 --------------g~f---~l-~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~ 340 (1265)
T KOG1920|consen 279 --------------GEF---VL-PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALL 340 (1265)
T ss_pred --------------ccc---cc-CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccc
Confidence 000 00 00111223578999999999998 44444 8999876642 1122222337
Q ss_pred EEecCCc-EE-EEecCCeEEEeecccccceeeecCccceeeecCcEEEEEeCCeEEEEecc
Q 002881 396 VWSSDGE-YA-VRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWA 454 (871)
Q Consensus 396 ~~s~~~~-~~-~~~~~~~i~i~~~~~~~~~~~~~~~s~~~i~~~~~La~~~~~~v~~~d~~ 454 (871)
.|+|... .+ +...+|...+++..... .++|. .+...++.+.+.+.++++.
T Consensus 341 ~W~p~~~~~L~v~~~sG~~~v~~~~~~t------~~s~~---d~S~~~VIDgs~llvT~ls 392 (1265)
T KOG1920|consen 341 MWDPVTEKTLHVLRESGQRLVRDFAWTT------DRSPN---DGSTVYVIDGSRLLVTPLS 392 (1265)
T ss_pred cccCCCceeEEEEecCCcEEEEEEEEee------eccCC---CCceEEEEeCCEEEEecch
Confidence 8887542 23 33346666665433221 33322 1455566666667777664
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=2.9e-10 Score=125.24 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=146.3
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~ 82 (871)
+.+..+...+.+.+|+|||++|+.+... ..|++||+.+++... +..+...+.+++|+|||+.|+.. +.++ .|.
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 4455667789999999999999987653 479999998876543 33455667789999999988754 4343 688
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
+|++.++... .+..+........|+|+|+.|+.++.. + .|.++|+.++. .. .+..+...+....|+| +++.++
T Consensus 262 ~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~-~l~~~~~~~~~~~~sp-dg~~i~ 337 (417)
T TIGR02800 262 VMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VR-RLTFRGGYNASPSWSP-DGDLIA 337 (417)
T ss_pred EEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCCccCeEECC-CCCEEE
Confidence 8998876543 344455555678999999988876653 3 68888887763 32 2333455677889999 777888
Q ss_pred EEECCC---cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC---eEEEEECCCCceEEEecCcccCeE
Q 002881 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVS 233 (871)
Q Consensus 160 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~ 233 (871)
.++.++ .|.+||+.++.. ..+... .......|+|++. .++..+.++ .+.+.+.. +.....+..+.+.+.
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~--~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~ 412 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGR--MILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVR 412 (417)
T ss_pred EEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCC--EEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcC
Confidence 777765 788999877543 333222 2334568999887 455554433 45555643 544555544444444
Q ss_pred EEEE
Q 002881 234 AVCF 237 (871)
Q Consensus 234 ~i~~ 237 (871)
.++|
T Consensus 413 ~~~w 416 (417)
T TIGR02800 413 EPAW 416 (417)
T ss_pred CCCC
Confidence 4444
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.5e-10 Score=116.20 Aligned_cols=188 Identities=16% Similarity=0.258 Sum_probs=155.9
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCceeEEeeec---CCCEEEEEEe------C--------------CCCEEEEEeCCCeE
Q 002881 25 PSEPWILASLYSGTVCIWNYQSQTMAKSFEVT---ELPVRSAKFV------A--------------RKQWVVAGADDMFI 81 (871)
Q Consensus 25 ~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~------~--------------~~~~l~~~~~dg~i 81 (871)
|...++|....||.++||+..+++....+... .+..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999998887777642 4556666663 2 33568888899999
Q ss_pred EEEECCCCcEEEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 82 RVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.... .........+..+.+++.+| ++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~-D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISP-DGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcC-CCCEEE
Confidence 999999998877775 79999999999999899999999999999999887 77788888888899999999 788999
Q ss_pred EEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeec-----CCcCEEEEEeCCCeEEEEECC
Q 002881 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-----GDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~~~l~~~~~dg~i~v~d~~ 217 (871)
+++ ++|++||+++.+.+..+.+|.++|+++.|... |. .+|.+...+..+.+|-..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~-~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK-YVLSSAAAERGITVWVVE 220 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc-eeeeccccccceeEEEEE
Confidence 887 89999999999999999999999999999876 33 244444455667777554
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.1e-09 Score=118.78 Aligned_cols=240 Identities=12% Similarity=0.086 Sum_probs=150.9
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEE---EEeCC--CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCC
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV---AGADD--MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~ 111 (871)
+.|.+.|.+.+.. +.+.........-.|+|||+.++ +...+ ..|.+.++.+++..... ...+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 4677888665544 44554556677889999997632 34333 46888898877654332 234445668999999
Q ss_pred CEEEEEEC-CC----eEEEEECCCC--ceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEEE--ECCC-CCCeEE
Q 002881 112 PYVLSSSD-DM----LIKLWDWEKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIW--NLGS-PDPNFT 180 (871)
Q Consensus 112 ~~l~~~~~-dg----~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~--d~~~-~~~~~~ 180 (871)
+.|+..+. +| .+.+|++.++ .........+.......+|+| +++.|+..+ .+|...+| ++.. +.....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 98887653 22 3444676642 133334333333456789999 666665544 56655555 4432 223444
Q ss_pred EecCCCCeeEEEEeecCCcCEEEEEeC-C--CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEEC---CCcEE
Q 002881 181 LDAHQKGVNCVDYFTGGDKPYLITGSD-D--HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE---DGTVR 254 (871)
Q Consensus 181 ~~~~~~~i~~i~~~~~~~~~~l~~~~~-d--g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~---dg~v~ 254 (871)
+......+....|+|+|+ .|+..+. + ..|.+||+.+++.... ......+....|+|+|+.|+..+. .+.|.
T Consensus 322 lt~~~~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred eccCCCCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 444555677889999998 4554433 2 4799999988776433 323345678999999998875443 34688
Q ss_pred EEeCCCCeEEEEEecCCccEEEEEEeeCC
Q 002881 255 IWHATTYRLENTLNYGLERVWAIGYMKSS 283 (871)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 283 (871)
++|+.+++...... ..+.+...+|+|-.
T Consensus 399 ~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEeec-CCCcccCceecCCC
Confidence 88988776544333 33556778888754
No 268
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=6.3e-11 Score=121.15 Aligned_cols=195 Identities=11% Similarity=0.166 Sum_probs=154.8
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---
Q 002881 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--- 96 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--- 96 (871)
.+++|.-..-|++++....|+-+|++.|..+..+....+.++++..++-..+|++|+.+|.|..||..+...+.++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 34455434446666667789999999999999999888999999999999999999999999999998876666554
Q ss_pred ---cCCC-----CeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002881 97 ---AHTD-----YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (871)
Q Consensus 97 ---~~~~-----~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (871)
.|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.......-.+..-+|..+.|.+.++.--+.......++
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILK 297 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhh
Confidence 2333 39999999999999999999999999999885555555555678999999885444444444567899
Q ss_pred EEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC
Q 002881 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~ 217 (871)
|||-.++++...+.. ...++.+++.|++. +++++..++.+..|=+.
T Consensus 298 iWd~~~Gk~~asiEp-t~~lND~C~~p~sG--m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 298 IWDECTGKPMASIEP-TSDLNDFCFVPGSG--MFFTANESSKMHTYYIP 343 (703)
T ss_pred hcccccCCceeeccc-cCCcCceeeecCCc--eEEEecCCCcceeEEcc
Confidence 999999998887764 44589999998876 78888887777666544
No 269
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=2.1e-08 Score=106.25 Aligned_cols=263 Identities=13% Similarity=0.128 Sum_probs=169.9
Q ss_pred CCCEEEEEEcCCCCEEEEEEc----CCeEEEEeCCCC--ce--eEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEE
Q 002881 15 SERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQ--TM--AKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYN 85 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~----dg~v~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~ 85 (871)
......++++|++++|.++.. +|.|..|.+... ++ +............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 445677899999999999876 468999987763 33 2333334456678999999999999875 89999999
Q ss_pred CCC-CcEEEE---Ec----------cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCce-EEE---EeecCCcceE
Q 002881 86 YNT-MDKVKV---FE----------AHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWM-CTQ---IFEGHSHYVM 146 (871)
Q Consensus 86 ~~~-~~~~~~---~~----------~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~---~~~~~~~~v~ 146 (871)
+.. +..... +. .......++.++|+++++++... ...|.+|+++.... +.. ..........
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 986 333222 11 12345788999999999888653 35899999986531 211 2223345578
Q ss_pred EEEEecCCCCEEE-EEECCCcEEEEECC--CCC--CeEEEecC------CCCeeEEEEeecCCcCEEEEEeCCCeEEEEE
Q 002881 147 QVTFNPKDTNTFA-SASLDRTIKIWNLG--SPD--PNFTLDAH------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (871)
Q Consensus 147 ~~~~~p~~~~~l~-~~~~dg~i~i~d~~--~~~--~~~~~~~~------~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d 215 (871)
.+.|+| ++++++ +.-.+++|.++++. .+. ........ ......+.++|+++. ++++....+.|.+|+
T Consensus 196 h~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~-lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 196 HLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF-LYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE-EEEEECTTTEEEEEE
T ss_pred EEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE-EEEEeccCCEEEEEE
Confidence 999999 566554 45567889999987 322 12222211 124678899999873 344445678999999
Q ss_pred CC--CCce--EEEecCcccCeEEEEEcCCCCEEEEEE-CCCcEEEEeC--CCCeEEEEEe-cCCccEEEEEE
Q 002881 216 YQ--TKSC--VQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIWHA--TTYRLENTLN-YGLERVWAIGY 279 (871)
Q Consensus 216 ~~--~~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~-~dg~v~iwd~--~~~~~~~~~~-~~~~~i~~i~~ 279 (871)
+. ++.. +..+.........+.++|+|++|+++. .++.|.+|++ .+|.+...-. .......|+.|
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 83 3333 334443344578999999999998887 5568888865 5777554432 23345556554
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.9e-10 Score=124.36 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=143.0
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCC--eEEE
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLY-S--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIRV 83 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~i 83 (871)
.+..+.+.+.+..|||||++|+..+. + ..|.+||+.+++... +....+......|+|||+.|+.. +.+| .|.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34445667889999999999987654 3 358899988876533 32223344578999999988754 5566 4788
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
+|+.+++.. .+..+........|+|+|+.|+..+. + ..|.++|+.++......+.+ .......|+| +++.++.
T Consensus 291 ~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~Sp-DG~~l~~ 366 (448)
T PRK04792 291 VDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNLGGSITP-DGRSMIM 366 (448)
T ss_pred EECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCcCeeECC-CCCEEEE
Confidence 888877643 44445556678899999998877654 3 35777788776332222222 2344578999 6666665
Q ss_pred EEC-CC--cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC--eEEEEECCCCceEEEecCcccCeEEE
Q 002881 161 ASL-DR--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTKSCVQTLEGHTHNVSAV 235 (871)
Q Consensus 161 ~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~i 235 (871)
.+. ++ .|.++|+.+++.. .+... .......|+|++.. ++++...+| .+++++. ++.....+..+.+.+...
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~-I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTM-VIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP 442 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCE-EEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence 544 44 4556787776543 23222 12224579999874 333444444 3777786 466666676666677888
Q ss_pred EEcCC
Q 002881 236 CFHPE 240 (871)
Q Consensus 236 ~~~p~ 240 (871)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 88873
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=5.1e-10 Score=105.37 Aligned_cols=240 Identities=14% Similarity=0.102 Sum_probs=165.8
Q ss_pred CCEEEEEEcC---CCC-EEEEEEcCCeEEEEeCCCCceeEEeeecC---C---CEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 16 ERVKSVDLHP---SEP-WILASLYSGTVCIWNYQSQTMAKSFEVTE---L---PVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 16 ~~v~~i~~s~---~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~---~---~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
..+..+.|.- +|. .++-+...|.|.+|..........+++-. . ...++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3456666653 344 45666778999999865544433343321 1 245788999999999999999999666
Q ss_pred CCCCcEE--EEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 86 YNTMDKV--KVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 86 ~~~~~~~--~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
....... +..+.|.-.++...|+... +.+.+|++|+.+.-||++... .+-+....|...|.++.-+|..+.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 5554443 4778999999999998754 578899999999999999432 23333556888999999999888999999
Q ss_pred ECCCcEEEEECCC-CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC--c---eEEEecCcccCeEEE
Q 002881 162 SLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--S---CVQTLEGHTHNVSAV 235 (871)
Q Consensus 162 ~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~---~~~~~~~~~~~v~~i 235 (871)
+.|-.|++||.++ ++|++.- .-.++|+.+.++|.-...+++++-.+| .++-+.+.+ + .....+.|.+-...-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence 9999999999985 4555443 345899999999976554455554444 555555433 2 233445566656666
Q ss_pred EEcCCCCEEEEEE-CCCcEE-EEe
Q 002881 236 CFHPELPIIITGS-EDGTVR-IWH 257 (871)
Q Consensus 236 ~~~p~~~~l~~~~-~dg~v~-iwd 257 (871)
.|.....+|+|++ .|..++ +|-
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeeeeccccceeeeee
Confidence 6754445778765 444433 453
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=6.3e-10 Score=104.80 Aligned_cols=249 Identities=12% Similarity=0.135 Sum_probs=169.6
Q ss_pred CCeEEEEeCCCCceeE--Eee-ecCCCEEEEEEeC---CCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCC------Ce
Q 002881 36 SGTVCIWNYQSQTMAK--SFE-VTELPVRSAKFVA---RKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTD------YI 102 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i 102 (871)
.|.+.+|++...+... ++. .....+..+.|.- +|. .++-+..+|.|.++..........+++-+. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 3678999987765443 222 2345677888874 455 456667789999998765544444443221 24
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCceEE--EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCeE
Q 002881 103 RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT--QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNF 179 (871)
Q Consensus 103 ~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~ 179 (871)
.++.|++.+..++++..+|.+.+-+.... .+. +..+.|.-..+...|+..+++++.+|+.|+.+..||++.+ +.+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 57899999999999999999996665443 333 3678899999999999888899999999999999999943 3333
Q ss_pred E-EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCCC--EEEEEECCCcEEE
Q 002881 180 T-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELP--IIITGSEDGTVRI 255 (871)
Q Consensus 180 ~-~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p~~~--~l~~~~~dg~v~i 255 (871)
. .+.|..+|.+|.-+|. ...++++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.-. .++++-.+ -.+|
T Consensus 204 ~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki 280 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKI 280 (339)
T ss_pred ecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceE
Confidence 3 3567889999988776 344999999999999999994 56655443 457899999999543 34444433 4566
Q ss_pred EeCCCCeE-----EEEEecCCccEEEEEEeeCCCeEEE
Q 002881 256 WHATTYRL-----ENTLNYGLERVWAIGYMKSSRRIVI 288 (871)
Q Consensus 256 wd~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~ 288 (871)
.+.+.+.. ....+.|.+-...-.|......+++
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lAT 318 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLAT 318 (339)
T ss_pred EEecccccchheeeeccccccceeeccccccccceeee
Confidence 66554432 2233334333444444333345666
No 273
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=1.7e-10 Score=126.75 Aligned_cols=267 Identities=18% Similarity=0.236 Sum_probs=186.7
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeec-CCCEEEEEEeC------CCCEEEEEeCCCeEEEEECCC
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVA------RKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~------~~~~l~~~~~dg~i~iw~~~~ 88 (871)
+++.+.++-. ++|++|. .-.|.+||+.++..+..+... -.++. .+ .+..++++..-+.+..=....
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhh
Confidence 3444444443 6676664 567999999988766544321 11111 11 223444444433332222111
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEE---EEEecCCCCEEEEEECCC
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ---VTFNPKDTNTFASASLDR 165 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~---~~~~p~~~~~l~~~~~dg 165 (871)
+. +..-.+.|....+..+...++.++.++.+.+||...++....+.........+ +-.++ +.-++++|+.-+
T Consensus 81 -~~---~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 81 -QI---IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFG 155 (967)
T ss_pred -hh---hhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccc
Confidence 11 11223344445566677889999999999999998874444333222211111 22344 567899999999
Q ss_pred cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE-EecCcccCeEEEEEcCCCCEE
Q 002881 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-TLEGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~i~~~p~~~~l 244 (871)
.|.+|+.....+...+.+|++.|..+.|+.+|. ++++.++|+.+++|++.+.+... +.-+|...|+.++++|+ .+
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 999999985555557889999999999999888 89999999999999999887655 66679999999999998 89
Q ss_pred EEEECCCcEEEEeCCCCeEEEEEecCC-ccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 245 ITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
+++++|-+.++|+.+ +..+..+..|. ..+|.+...++...+++++.||.+.+|.
T Consensus 232 ~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred EEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999999999744 55555666554 4699999999999999999999999974
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=4.8e-08 Score=100.24 Aligned_cols=261 Identities=10% Similarity=0.056 Sum_probs=167.7
Q ss_pred CCCEEEEEEcC-----CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCc
Q 002881 26 SEPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMD 90 (871)
Q Consensus 26 ~~~~la~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~ 90 (871)
++.++++.... |+|.+.|..+++.+..+.....+- .+ ++|||+.|+++.. +..|.+||..+++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 45555554443 899999999999998888655443 35 9999999987765 7899999999999
Q ss_pred EEEEEccCCC-------CeEEEEEcCCCCEEEEEE-C-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 91 KVKVFEAHTD-------YIRCVAVHPTLPYVLSSS-D-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 91 ~~~~~~~~~~-------~i~~i~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
.+..+....+ ....++++|+|++|++.. . +..|.+.|+.++.....+-.+ ....-...+ +..+.+-
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--~~~~vy~t~---e~~~~~~ 163 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--DCYHIFPTA---NDTFFMH 163 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC--CCcEEEEec---CCccEEE
Confidence 9988864322 234789999999999876 3 689999999998444433321 111222222 2222233
Q ss_pred ECCCcEEEEECCCCCCeEE-----EecCCCCee-EEEEee-cCCcCEEEEEeCCCeEEEEECCCC-----ceEEEecC--
Q 002881 162 SLDRTIKIWNLGSPDPNFT-----LDAHQKGVN-CVDYFT-GGDKPYLITGSDDHTAKVWDYQTK-----SCVQTLEG-- 227 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~-----~~~~~~~i~-~i~~~~-~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~-- 227 (871)
+.||......+........ +.....++. .-.+++ ++. ++.+... |.|.+.|+... ..+..+..
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR--LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc--EEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 4556555544432211110 111000000 003455 443 5656555 99999996543 22222211
Q ss_pred -----cccCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC-eEEEEE-
Q 002881 228 -----HTHNVSAVCFHPELPIIITGS----------EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGY- 290 (871)
Q Consensus 228 -----~~~~v~~i~~~p~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~g~- 290 (871)
..+...-++++|+++.+++.. ..+.|.++|..+++.+..+... ..++.++++||++ .|.+..
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCC
Confidence 122344599999999888743 1247999999999999988876 6899999999999 777665
Q ss_pred cCCeEEE
Q 002881 291 DEGTIMV 297 (871)
Q Consensus 291 ~dg~i~i 297 (871)
.++.+.+
T Consensus 320 ~s~~VsV 326 (352)
T TIGR02658 320 GDKTLYI 326 (352)
T ss_pred CCCcEEE
Confidence 4565655
No 275
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.27 E-value=3.5e-10 Score=119.01 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=115.6
Q ss_pred cCcccceeeeeccCCHHHHHHHHHHcCChHHH----------------HHHHHHHHHcCChhhHHHHHHHcCCcchhHHH
Q 002881 640 TDPDYRFELAIQLGRLEVAQEIATEVQSESKW----------------KQLGELAMSTGKLEMAEGCMKQAMDLSGLLLL 703 (871)
Q Consensus 640 ~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w----------------~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 703 (871)
.+.+.+.-|+-+|.+||+|+.+++...+|.+- .+.|+.-+.+|+--.|+..|.+++-..+...+
T Consensus 558 n~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~ 637 (1636)
T KOG3616|consen 558 NATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARA 637 (1636)
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHh
Confidence 34455668899999999999999987776531 22344455566667788888888877665554
Q ss_pred HH----hcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHHhh
Q 002881 704 YS----SLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQ 779 (871)
Q Consensus 704 ~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~~~~~~~~~~~~L~ 779 (871)
.. ...|.+.+..++....+...+..|+.+|.++.+|++|++.|.+-+.+-+|+++||---|+++-.+.+.|..+|.
T Consensus 638 a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~ 717 (1636)
T KOG3616|consen 638 ALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE 717 (1636)
T ss_pred hcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH
Confidence 32 25667778888888889999999999999999999999999999999999999999999999999999998887
Q ss_pred hhC
Q 002881 780 KVN 782 (871)
Q Consensus 780 ~~~ 782 (871)
.++
T Consensus 718 ~~~ 720 (1636)
T KOG3616|consen 718 QIG 720 (1636)
T ss_pred HHH
Confidence 554
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=3.9e-11 Score=137.64 Aligned_cols=199 Identities=16% Similarity=0.272 Sum_probs=161.7
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeee-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002881 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 90 (871)
..+-..|.++.=||..++-++|+.||.|++|....+..+..++. ....|+.+.|+.+|+.+.++..||.+.+|... .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 34556789999999999999999999999999999888877763 34789999999999999999999999999987 56
Q ss_pred EEEEEccCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 91 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+....+.|+.......|-. ..+++++ +++.+.+||.--......+-..|.+.++++++.| ..+.|++|+.+|.|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEV 2360 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcE
Confidence 6677788998888888875 4567654 4789999996533222223378999999999999 78999999999999
Q ss_pred EEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec
Q 002881 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 226 (871)
++||++..+....++. +. ...++++|+..|.++||++.....+.++.
T Consensus 2361 ~l~D~rqrql~h~~~~---------~~---~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA---------LD---TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEeehHHHHHHHHhhh---------hh---hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999988776655543 22 22389999999999999998776666554
No 277
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2e-09 Score=111.50 Aligned_cols=186 Identities=15% Similarity=0.145 Sum_probs=150.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcc---CCCCeEEEEEc--------------------CCCCEEEEEECCCeE
Q 002881 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA---HTDYIRCVAVH--------------------PTLPYVLSSSDDMLI 123 (871)
Q Consensus 67 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~i~~~--------------------~~~~~l~~~~~dg~i 123 (871)
|-..++|..+.||.+++|+..+++....|.. -++..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766642 23445555552 133467888899999
Q ss_pred EEEECCCCceEEEEe--ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCE
Q 002881 124 KLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (871)
Q Consensus 124 ~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 201 (871)
.+|+...+ .+...+ .+|.+.|.++.|+. +-..|.+++.|+.+..|+......+..+......+.+++++|++. .
T Consensus 83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~--~ 158 (541)
T KOG4547|consen 83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK--I 158 (541)
T ss_pred EEEEecCC-eEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC--E
Confidence 99999988 444443 47899999999987 778999999999999999999988889998899999999999976 6
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC-----CCEEEEE-ECCCcEEEEeC
Q 002881 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LPIIITG-SEDGTVRIWHA 258 (871)
Q Consensus 202 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~-----~~~l~~~-~~dg~v~iwd~ 258 (871)
+++++ +.|++||+.+++.+.++.+|.++|.+++|--+ |.+++++ ..+.-+.+|-.
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 77765 68999999999999999999999999999876 5666554 34445666644
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=4.5e-08 Score=100.46 Aligned_cols=238 Identities=12% Similarity=0.118 Sum_probs=156.8
Q ss_pred EcCCCCEEEEEEc----------CCeEEEEeCCCCceeEEeeecCC-------CEEEEEEeCCCCEEEEEe-C-CCeEEE
Q 002881 23 LHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-------PVRSAKFVARKQWVVAGA-D-DMFIRV 83 (871)
Q Consensus 23 ~s~~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~-dg~i~i 83 (871)
+||||+.|+++.. +..|.+||..+++.+..+..... ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998888765 68899999999999988875322 234789999999999876 3 789999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce-EEE---EeecCCcceE-EEEEecCCCCEE
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ---IFEGHSHYVM-QVTFNPKDTNTF 158 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~~~~~~~v~-~~~~~p~~~~~l 158 (871)
.|+.+++.+..+.-.. ...-...+++. +++ -+.||......+..... ... .+.....++. .-.+.+.++..+
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCc-cEE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999988877522 22222333222 222 22344444333322111 111 1111001110 003455466666
Q ss_pred EEEECCCcEEEEECCCCCC-----eEEEe-------cCCCCeeEEEEeecCCcCEEEE-E---------eCCCeEEEEEC
Q 002881 159 ASASLDRTIKIWNLGSPDP-----NFTLD-------AHQKGVNCVDYFTGGDKPYLIT-G---------SDDHTAKVWDY 216 (871)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~-----~~~~~-------~~~~~i~~i~~~~~~~~~~l~~-~---------~~dg~i~v~d~ 216 (871)
.+... |+|.+.|+.+... ...+. -..+...-++++++++. +++ . ...+.|.++|.
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~--lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR--IYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE--EEEEecCCccccccCCCCEEEEEEC
Confidence 66665 9999999754332 22111 12334445899998885 443 2 12258999999
Q ss_pred CCCceEEEecCcccCeEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCeEEEEE
Q 002881 217 QTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~ 267 (871)
.+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+.++
T Consensus 287 ~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999988873 45789999999999 777665 5788999999999988887
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=4.5e-08 Score=105.95 Aligned_cols=255 Identities=11% Similarity=0.005 Sum_probs=163.3
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEE-E
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC-V 105 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-i 105 (871)
+..+++++.+|.|.-+|..+|+.+-............. .++..+++++.+|.+..+|..+|+.+....... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 55788888899999999999988876654432222222 357788899999999999999999887765332 2221 1
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcce-----EEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE
Q 002881 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV-----MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (871)
Q Consensus 106 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 180 (871)
.. .+..++.++.+|.|..||.+++... -......... .+.... +..++.++.+|.+..+|..+++....
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~-W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGERL-WTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCcee-eEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeee
Confidence 12 2457788888999999999988432 2222111111 111121 24677888889999999988876554
Q ss_pred EecCCC----C---eeEEEEee--cCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCC
Q 002881 181 LDAHQK----G---VNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 181 ~~~~~~----~---i~~i~~~~--~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg 251 (871)
...... . +..+.-+| .++ .+++++.+|.+..||..+++.+...... ...... ..+..+++++.+|
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGG--QVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECC--EEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCC
Confidence 321100 0 00000011 122 6888888999999999999887766521 112222 2456788888999
Q ss_pred cEEEEeCCCCeEEEEEecCCcc-EEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 252 TVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.+..+|..+++.+......... ..+... .+..+++++.+|.++++
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 9999999999887765322121 222222 46688888899988774
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3.5e-07 Score=99.16 Aligned_cols=463 Identities=14% Similarity=0.150 Sum_probs=237.2
Q ss_pred EeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccC-eEEEEEcCCCCEEEEEECCCc-----EEEEeCCCC-----
Q 002881 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPIIITGSEDGT-----VRIWHATTY----- 261 (871)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~i~~~p~~~~l~~~~~dg~-----v~iwd~~~~----- 261 (871)
|++++. .++.|+.+|.|.+.+-+ -+.++.++.+... |..+....+..+|++.++|+. |+||++..-
T Consensus 31 ~~s~~~--~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG--SVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc--eEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 444444 69999999999998843 4555777777666 444444444468888777654 899997532
Q ss_pred -eEE---EEE--ec--CCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcc
Q 002881 262 -RLE---NTL--NY--GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD 333 (871)
Q Consensus 262 -~~~---~~~--~~--~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (871)
..+ ..+ .. ...++.+++.+.+-+.+|+|..+|.|... .|.+.........
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~------------~GDi~RDrgsr~~---------- 165 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY------------KGDILRDRGSRQD---------- 165 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE------------cCcchhcccccee----------
Confidence 222 111 11 24578899999999999999999999885 2233222211111
Q ss_pred eeccCCCeeeeeeeecCccccCCceEEECCCCCE-EEEEcCCcEEEEEeecccccCcCceeEEEEecCCcEEEEecCCeE
Q 002881 334 YEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF-VVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKI 412 (871)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~i 412 (871)
.......+++.+.+..+++. +.+.+..++..|...+..+.. ...+.. +..+
T Consensus 166 --------------~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~------~~ld~~--------G~~l 217 (933)
T KOG2114|consen 166 --------------YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSL------KVLDNN--------GISL 217 (933)
T ss_pred --------------eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcce------eeeccC--------Cccc
Confidence 01122336678888888876 455566777777654211000 000000 1111
Q ss_pred EEeecccccceeeecCccceeeecCcEEEEEeCCeEEEEeccCCcEEEEEE-cceeEEEEcCCCCEEEEEeCCeEEEEEe
Q 002881 413 KIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID-VTVKNLYWADSGDLVAIASDTSFYILKY 491 (871)
Q Consensus 413 ~i~~~~~~~~~~~~~~~s~~~i~~~~~La~~~~~~v~~~d~~~~~~~~~~~-~~i~~i~~s~~~~~la~~~~~~~~~l~~ 491 (871)
.-| .+++. ..-++++.+..+.|||.+...+...+. +.=..+-|...|-.+++..+.+.-.
T Consensus 218 nCs------------s~~~~----t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~--- 278 (933)
T KOG2114|consen 218 NCS------------SFSDG----TYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTEN--- 278 (933)
T ss_pred eee------------ecCCC----CccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCC---
Confidence 111 12221 223555666678888877555555555 3444444444444444433322110
Q ss_pred cHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEeccEEEEEccCCeE-EEEECCeEeEEEecccceEEEEEeee
Q 002881 492 NRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRL-NYCVGGEVTTMFHLDRPMYLLGYLAS 570 (871)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (871)
. + ..+.. ..++ +-+|.-. ++. -|.. -++..... +...
T Consensus 279 ---------------~--s--~s~ss----~~~i--------~~~~d~~-n~~v~ys~--------vl~~l~d~--l~~w 316 (933)
T KOG2114|consen 279 ---------------T--S--LSNSS----SNRI--------FKAYDLR-NRYVLYSS--------VLEDLSDN--LIEW 316 (933)
T ss_pred ---------------c--c--cCccc----hhhe--------eehhhhc-CcccchHH--------hHHHHHHH--HHhc
Confidence 0 0 00000 0000 0111111 111 0100 00000000 0011
Q ss_pred CCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhCCC--CCcch----hHHHHHHHHhCCChhhhhhcccCccc
Q 002881 571 QSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPS--IPKEH----HNSVARFLESRGMIEEAIEVATDPDY 644 (871)
Q Consensus 571 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~--i~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~ 644 (871)
+...+++..+|.+.....-...-.......+.-+..|..+... .+... +.....+|-++|..+.|.
T Consensus 317 ~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~-------- 388 (933)
T KOG2114|consen 317 SFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEAT-------- 388 (933)
T ss_pred CCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHH--------
Confidence 2244455555554432221100111111112223333222211 11111 133355666666666665
Q ss_pred ceeeeec-cCCHHHHHHHHHHcCChHHHHHHHHHHH--------HcCChhhHHHHHHHcCCcchhHHHHHhcCC---HHH
Q 002881 645 RFELAIQ-LGRLEVAQEIATEVQSESKWKQLGELAM--------STGKLEMAEGCMKQAMDLSGLLLLYSSLGD---AEG 712 (871)
Q Consensus 645 ~f~~~l~-l~~~~~A~~~~~~~~~~~~w~~la~~al--------~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~---~~~ 712 (871)
+.+++ .|.+|-++- ++.--+++.-++|+.+.. ..-+..+-..||.+.+|.++|.-.-....+ .-.
T Consensus 389 --~qYI~tI~~le~s~V-i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd 465 (933)
T KOG2114|consen 389 --DQYIETIGFLEPSEV-IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFD 465 (933)
T ss_pred --HHHHHHcccCChHHH-HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeee
Confidence 23332 333343333 333333445566666544 234566678899999999997764333220 112
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH-HCCCchHHHHHHHhcCCchHHHHHHHHHHHhhh
Q 002881 713 ISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV-ESNRIPEAALMARSYLPSKVSEIVAIWRKDLQK 780 (871)
Q Consensus 713 ~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~-~~~~~~~A~~la~~~~~~~~~~~~~~~~~~L~~ 780 (871)
+...-++..+.+-...|..++...+.-+...++++ ..+.+.+|+.+-..+-++++-+.+..|.+.|..
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~ 534 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLE 534 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 55666777777778888888888888666666655 556699999988888888877777777777643
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=3.9e-08 Score=106.39 Aligned_cols=256 Identities=12% Similarity=0.049 Sum_probs=166.5
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeE--
Q 002881 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-- 103 (871)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-- 103 (871)
++..+++++.+|.+..+|..+|+.+....... .+.+.... .+..++.++.+|.|..||.++|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 35678888889999999999998876655332 22211111 345678888899999999999998877654332111
Q ss_pred ---EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCC---cc------e-EEEEEecCCCCEEEEEECCCcEEEE
Q 002881 104 ---CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---HY------V-MQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 104 ---~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~------v-~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
+.... +..++.++.+|.+..+|.+++...-..-.... .. + .+... .+..+++++.+|.+..+
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEE
Confidence 11122 24678888899999999988843322111000 00 0 11112 24578888889999999
Q ss_pred ECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc-CeEEEEEcCCCCEEEEEEC
Q 002881 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 171 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l~~~~~ 249 (871)
|..+++........ ....... .++ .+++++.+|.+..+|..+++.+........ ...+... .+..+++++.
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 99988776655421 1112222 233 588888999999999999988766532222 2222222 3568899999
Q ss_pred CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
+|.|+++|..+++.+..+..+...++.--...+ ..|.+++.||.++.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA 375 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence 999999999999999888866544433322233 45888999998865
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.12 E-value=2.8e-07 Score=92.78 Aligned_cols=214 Identities=10% Similarity=0.140 Sum_probs=156.4
Q ss_pred cCCCCEEEEEEcCCeEEEEeCCCCceeEEeeec-------C-----CCEEEEE-EeC-CCCEEEEEeCCCeEEEEECCCC
Q 002881 24 HPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-------E-----LPVRSAK-FVA-RKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 24 s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-------~-----~~v~~~~-~~~-~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
+.||+.++.. ..|.|.+||.++.++.+ +... + .++.-+. |++ +|++++..|. |...|.+...+
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 5678876664 47889999987755433 2211 0 1111122 333 6788888765 66777776554
Q ss_pred cEEEEEccCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002881 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (871)
-.++. +|...|+...+..+++-++.|..|| .+-|+|.+++ ... .+...-+.|.++..+| ++..++++.....|.
T Consensus 352 ~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-e~k-r~e~~lg~I~av~vs~-dGK~~vvaNdr~el~ 426 (668)
T COG4946 352 YSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-EVK-RIEKDLGNIEAVKVSP-DGKKVVVANDRFELW 426 (668)
T ss_pred eeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-eEE-EeeCCccceEEEEEcC-CCcEEEEEcCceEEE
Confidence 44433 5677799989988888899999999 8999999987 433 3445557799999999 889999999999999
Q ss_pred EEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC----eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 002881 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH----TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l 244 (871)
+.|+.++.+...-+...+-|+.+.|+|++. +++-+.-+| .|+++|+.+++... .......=.+-+|.|++++|
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr--~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSR--WIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCce--eEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEE
Confidence 999999987766677788899999999987 788877665 68999998766543 33334444567899999988
Q ss_pred EEEE
Q 002881 245 ITGS 248 (871)
Q Consensus 245 ~~~~ 248 (871)
.--+
T Consensus 504 YfLs 507 (668)
T COG4946 504 YFLS 507 (668)
T ss_pred EEEe
Confidence 7665
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=1.5e-07 Score=112.85 Aligned_cols=239 Identities=10% Similarity=0.122 Sum_probs=158.8
Q ss_pred EEEEEcCCCCEEE-EEEcCCeEEEEeCCCCceeEEeee-c-------------CCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002881 19 KSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEV-T-------------ELPVRSAKFVARKQWVVAGAD-DMFIR 82 (871)
Q Consensus 19 ~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~~-dg~i~ 82 (871)
..+++++++..|+ +-..++.|++||.. +..+..+.. . -.....++++++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4688888644444 44557889999965 444433332 1 123578999999887777654 57899
Q ss_pred EEECCCCcEEEEEccC-----------------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecC---
Q 002881 83 VYNYNTMDKVKVFEAH-----------------TDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--- 141 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~-----------------~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 141 (871)
++|..++. +.++.+. -.....++++|+ +..+++.+.++.|++||..++. .. .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-TR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-EE-EEecCCcc
Confidence 99987754 3333110 113467999994 5555666678899999988762 22 11111
Q ss_pred ------------CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec---------------------CCCCe
Q 002881 142 ------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---------------------HQKGV 188 (871)
Q Consensus 142 ------------~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------~~~~i 188 (871)
-.....++++|+++.++++-+.++.|++||+.++.......+ .-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 123467999994334666667789999999976543211100 01123
Q ss_pred eEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-------------CcccCeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------------GHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 189 ~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------~~~~~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
..++++++++ ++++-+.++.|++||..++....... +.......++++++|+++++-+.++.|++
T Consensus 807 ~Gvavd~dG~--LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 807 LGVLCAKDGQ--IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred ceeeEeCCCc--EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 5788888876 78888889999999998765543221 11235678999999999888889999999
Q ss_pred EeCCCCeE
Q 002881 256 WHATTYRL 263 (871)
Q Consensus 256 wd~~~~~~ 263 (871)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.09 E-value=2.8e-08 Score=92.58 Aligned_cols=239 Identities=12% Similarity=0.005 Sum_probs=160.9
Q ss_pred EEEEcCC-----CCEEEEEEcCCeEEEEeCCCCce-eEEeeecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE
Q 002881 20 SVDLHPS-----EPWILASLYSGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 20 ~i~~s~~-----~~~la~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~ 92 (871)
.+.|-|. -.+||.|+..|...+|...+.+. .+....|...|+-..=.- ....+..++.|.++++.+++-+..-
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4556552 24799999999999999886543 333444444332221111 2234677788888888877644322
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce-EEE-EeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ-IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 93 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
.......-.+.+++++++++++++.++...|..|.++.... ... ........-.+..|+. ....||+++.||++.||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEE
Confidence 22211112378899999999999999999999999875422 222 2223334456788988 77899999999999999
Q ss_pred ECCCCCCe-E----EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC-------cc-cCeEEEEE
Q 002881 171 NLGSPDPN-F----TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------HT-HNVSAVCF 237 (871)
Q Consensus 171 d~~~~~~~-~----~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------~~-~~v~~i~~ 237 (871)
|++..... . +-..|.+.+..+.|++.|...+|+..-.-+.+.+.|++++...+.+.. |. ..|...+|
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f 310 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF 310 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence 99875422 1 223578899999999988766888887788999999998876544432 22 23777778
Q ss_pred cCCCCEEEEEECCCcEEEEeCCC
Q 002881 238 HPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 238 ~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
+.++..+.+.+++ .+.=|++..
T Consensus 311 ~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 311 NNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cCCCcccccccch-hhheeeccc
Confidence 8777766666654 455565543
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=4.6e-09 Score=99.52 Aligned_cols=240 Identities=18% Similarity=0.358 Sum_probs=167.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc-----eeEEeeecC------------CCEEEEEEeCCC--CEEEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTE------------LPVRSAKFVARK--QWVVA 74 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 74 (871)
..+.|+++.|...|.||++|...|.|.+|.-+... ....+++|+ ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999854422 222345553 258889998765 45777
Q ss_pred EeCCCeEEEEECCCC-------------------------------------cE-----EEEE-ccCCCCeEEEEEcCCC
Q 002881 75 GADDMFIRVYNYNTM-------------------------------------DK-----VKVF-EAHTDYIRCVAVHPTL 111 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~-------------------------------------~~-----~~~~-~~~~~~i~~i~~~~~~ 111 (871)
.+.|.+|++|.+... +. .+.. ..|.-.|.++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 788999999976321 00 0111 3566678899999988
Q ss_pred CEEEEEECCCeEEEEECCCCceEEEE--eecC-----CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC------e
Q 002881 112 PYVLSSSDDMLIKLWDWEKGWMCTQI--FEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP------N 178 (871)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------~ 178 (871)
..++++ +|-.|.+|+++.......+ ...| ..-|++..|+|...+.|.-.+..|.|++-|++.... .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 5678999998744222222 2233 235889999998888888889999999999984321 1
Q ss_pred EE----------EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCccc------------Ce---
Q 002881 179 FT----------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTH------------NV--- 232 (871)
Q Consensus 179 ~~----------~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~------------~v--- 232 (871)
.. +...-..|..+.|+++|. |+++- +--+|++||.+. ..++.++..|.. .|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEe-ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 11 112234678889999887 55554 456899999986 456777754422 22
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 233 SAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 233 ~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
..+.|+.+...+++|+..+..-+|-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3477888888999999887777775
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=6.6e-10 Score=127.94 Aligned_cols=197 Identities=17% Similarity=0.303 Sum_probs=159.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (871)
+-..|.++.=+|...+-++|+.||.+++|....+..+..++ .-+..++.+.|+.+|+.+.++..||.+.+|.... +.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cc
Confidence 34568888889999999999999999999999888887775 3347899999999999999999999999999873 45
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEEEE---CCCcEEEEECCCCCC-eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCe
Q 002881 135 TQIFEGHSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (871)
Q Consensus 135 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~ 210 (871)
......|+.....+.|-. ..+++++ .++.+.+||..-... -..-..|.++.+++++.|... ++++|+.+|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q--llisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ--LLISGGRKGE 2359 (2439)
T ss_pred eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce--EEEecCCcCc
Confidence 566677888888888863 5566654 468899999753321 122278999999999999876 8999999999
Q ss_pred EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 002881 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (871)
Q Consensus 211 i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (871)
|++||++..+.+++++. ++ ...++++|+..|.++||++....++.++..
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 99999998777766653 44 456899999999999999988877766653
No 287
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.05 E-value=8.4e-09 Score=99.45 Aligned_cols=243 Identities=14% Similarity=0.197 Sum_probs=181.2
Q ss_pred eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002881 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iw 126 (871)
..+.+++|...|++...-|..+-+++.+.|.+++||- .++++.-..+. ....+++++.++++...|++|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4456778888888888889888899999999999994 44555444432 346789999999999999999999999988
Q ss_pred ECCCC---ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE--ecCCCCeeEEEEeecCCcCE
Q 002881 127 DWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL--DAHQKGVNCVDYFTGGDKPY 201 (871)
Q Consensus 127 d~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~~ 201 (871)
.+... ....+....|..++..+-|+- ....+++.+.|..+.---.+++..+... .... ++..+.-. +
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~---t~~~~d~~----~ 167 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA---SALQFDAL----Y 167 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccC---CCCceeeE----E
Confidence 76532 133455667999999999987 6788888888877654444444332111 1111 11111100 3
Q ss_pred EEEEeCCCeEEEEEC--CCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEEecCCccEEEEE
Q 002881 202 LITGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIG 278 (871)
Q Consensus 202 l~~~~~dg~i~v~d~--~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~i~ 278 (871)
...|...|.|.+-.+ ..-.++.++.+|.+.+++++|.|....+.+|.+|..+.+||+...+ ....+..+...|..++
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 455556666665544 3456788999999999999999999999999999999999987554 4456777888899999
Q ss_pred EeeCCCeEEEEEcCCeEEEec
Q 002881 279 YMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 279 ~~~~~~~l~~g~~dg~i~i~~ 299 (871)
..+.-+.+.+++.||.|.+|.
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhheeeeeccCCCeEEEEe
Confidence 988899999999999999984
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=2.4e-08 Score=94.79 Aligned_cols=238 Identities=17% Similarity=0.289 Sum_probs=162.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEccCC------------CCeEEEEEcCCC--CEEEEE
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTL--PYVLSS 117 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~i~~i~~~~~~--~~l~~~ 117 (871)
...|+++.|...|.++++|...|.|.+|.-+... ....|++|. ..|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578999999999999999999999999755332 122344553 247778887654 357777
Q ss_pred ECCCeEEEEECCCCc-----------------------------------------eEEEEe-ecCCcceEEEEEecCCC
Q 002881 118 SDDMLIKLWDWEKGW-----------------------------------------MCTQIF-EGHSHYVMQVTFNPKDT 155 (871)
Q Consensus 118 ~~dg~i~iwd~~~~~-----------------------------------------~~~~~~-~~~~~~v~~~~~~p~~~ 155 (871)
+.|.+|++|.+.... ...+++ ..|.-.|.++.++. +.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence 889999999875330 000111 34666788999987 55
Q ss_pred CEEEEEECCCcEEEEECCCCCCeEEE---ecCC-----CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce------
Q 002881 156 NTFASASLDRTIKIWNLGSPDPNFTL---DAHQ-----KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------ 221 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~-----~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------ 221 (871)
..+++ ..|-.|.+|.+.-....+.+ .+|. .-|++..|+|.... ++.-.++.|.|++-|++....
T Consensus 185 et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-VFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-eEEEecCCCcEEehhhhhhhhccCchh
Confidence 55555 45788999998754433322 3332 34778888887544 777788899999999983221
Q ss_pred EE--E--------ecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEEecCC------------ccE---E
Q 002881 222 VQ--T--------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGL------------ERV---W 275 (871)
Q Consensus 222 ~~--~--------~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~------------~~i---~ 275 (871)
+. + +.+-...|+.+.|+|+|+++++-+. -+|++||.+..+ ++.+++.|. ..| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 10 1 1122346888999999999998775 489999987644 555554331 222 3
Q ss_pred EEEEeeCCCeEEEEEcCCeEEEe
Q 002881 276 AIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.+.|+.|.+.+.+|+-.....++
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEEecCCcccccccccccceeee
Confidence 47889999999999888777664
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=6.9e-08 Score=103.98 Aligned_cols=205 Identities=10% Similarity=-0.023 Sum_probs=128.6
Q ss_pred CCEEEEEEcCCCCE-EEEEEcC---CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCC
Q 002881 16 ERVKSVDLHPSEPW-ILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNT 88 (871)
Q Consensus 16 ~~v~~i~~s~~~~~-la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~ 88 (871)
+.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++.... +..|.++++.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 37789999999985 6654443 469999998887655433 5556677889999998875533 45788889887
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD- 164 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d- 164 (871)
++.. .+..+........|+|||+.|+..+.. | .|.+.|+.++.....+..+. . ...|+| +++.++..+..
T Consensus 267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SP-DG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVST-YKNYIVYSSRET 340 (419)
T ss_pred CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECC-CCCEEEEEEcCC
Confidence 7643 344344334556899999988876643 2 68888988773322222222 1 248999 66666555543
Q ss_pred --------CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe-CC--CeEEEEECCCCceEEEecCcccCe
Q 002881 165 --------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-DD--HTAKVWDYQTKSCVQTLEGHTHNV 232 (871)
Q Consensus 165 --------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~-~d--g~i~v~d~~~~~~~~~~~~~~~~v 232 (871)
..|.+.|+.++.. ..+... .......|+|+|.. ++... .. ..+.++++. +.....+....+.+
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~--I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~ 414 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGS--IMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKI 414 (419)
T ss_pred CcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCE--EEEEEccCCcEEEEEEecC-CCeeEEeecCCCcc
Confidence 3688889877754 333332 23345889999984 43333 22 246667765 33333343333333
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.02 E-value=2.2e-09 Score=113.05 Aligned_cols=243 Identities=19% Similarity=0.260 Sum_probs=178.9
Q ss_pred EEEEEEcCC--CCEEEEEEcCCeEEEEeCCCC---ceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE
Q 002881 18 VKSVDLHPS--EPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 18 v~~i~~s~~--~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
|-.+.|+|. .++-++...+..-.+|++... .....+.+|...|+.+.|+|.. ..+++++.|..+..||+.+...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 566778774 345555566777889998542 3445667899999999999965 5688999999999999987543
Q ss_pred -EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 92 -VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 92 -~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
+..+..-...-+.++|+-..+.+++.+....|.+||.+.+......+.+|...|..+.|+......+.+++.||+|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 3444433445678999987777777788889999999998888888999999999999987667788999999999999
Q ss_pred ECCCCCCeE-EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEE---------CCC-CceEEEecCcccCeEEEEEcC
Q 002881 171 NLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD---------YQT-KSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 171 d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d---------~~~-~~~~~~~~~~~~~v~~i~~~p 239 (871)
|........ .......+|.--.+.|-|++.++.-.-.+..+.+++ ..+ .+++.++.||...|....|-.
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 987654322 223445677777788877763333222222344433 222 467899999999988777754
Q ss_pred CCC----------EEEEEECCCcEEEEeCCC
Q 002881 240 ELP----------IIITGSEDGTVRIWHATT 260 (871)
Q Consensus 240 ~~~----------~l~~~~~dg~v~iwd~~~ 260 (871)
.+. .|+|-|.|.++++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 332 789999999999997653
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=5.7e-07 Score=96.94 Aligned_cols=210 Identities=15% Similarity=0.036 Sum_probs=130.5
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCE-EEEEeC---CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCC
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW-VVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 112 (871)
..|.+-|.+... .+.+.... ......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 356666654433 33343333 7888999999985 664433 3579999998887655443 455567788999998
Q ss_pred EEEEEEC---CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCC--cEEEEECCCCCCeEEEecCCC
Q 002881 113 YVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDR--TIKIWNLGSPDPNFTLDAHQK 186 (871)
Q Consensus 113 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~ 186 (871)
.|+.... +..|.++|+.++ ...+. ..+........|+| +++.++..+ ..+ .|.+.|+.+++....... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g-~~~~L-T~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTK-TLTQI-TNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCC-cEEEc-ccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 7775432 357888898877 33333 33333344568999 565555544 333 578888877765333221 11
Q ss_pred CeeEEEEeecCCcCEEEEEeCC---------CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCC---cEE
Q 002881 187 GVNCVDYFTGGDKPYLITGSDD---------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVR 254 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg---~v~ 254 (871)
....|+|+|+. ++..... ..|.+.|+.++.. ..+... .......|+|||+.|+..+.++ .+.
T Consensus 322 --~~~~~SPDG~~--Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 322 --NNSSVSTYKNY--IVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred --cCceECCCCCE--EEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 12489999984 4444332 3788889887764 333322 2233588999999877665432 355
Q ss_pred EEeCC
Q 002881 255 IWHAT 259 (871)
Q Consensus 255 iwd~~ 259 (871)
+.++.
T Consensus 396 ~~~l~ 400 (419)
T PRK04043 396 IIRLN 400 (419)
T ss_pred EEecC
Confidence 66654
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.4e-09 Score=110.54 Aligned_cols=280 Identities=11% Similarity=0.133 Sum_probs=188.7
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC-------ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 81 (871)
..+.||+..|..++--.+.+-+++++.|.+|++|.++.. ....+++.|+.+|.++.|-.+.+.++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 457899999999988778888999999999999998642 2445677899999999999998887765 7889
Q ss_pred EEEECCCCcEEEEEc--cCCCCeEEEEEcCC--CCEEE-EEECCCeEEEEECCCCceEEE-Ee---ecCCcceEEEEEec
Q 002881 82 RVYNYNTMDKVKVFE--AHTDYIRCVAVHPT--LPYVL-SSSDDMLIKLWDWEKGWMCTQ-IF---EGHSHYVMQVTFNP 152 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~--~~~~~i~~i~~~~~--~~~l~-~~~~dg~i~iwd~~~~~~~~~-~~---~~~~~~v~~~~~~p 152 (871)
.+||.--++.+..+. ...+.+..+..-++ ...++ .|+...+|+++|.+...-... .. .+.+..+.+++..|
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 999987776655332 11122333333332 33333 346788999999987522211 11 23345688999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEE-EECCCCceEEEecCcccC
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV-WDYQTKSCVQTLEGHTHN 231 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v-~d~~~~~~~~~~~~~~~~ 231 (871)
.++.++.+-.+|.|.+.|.++++.+..++..+.....++- |... .++....|..+.+ |...++....+.+....+
T Consensus 887 -~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq--~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 887 -KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQ--ALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred -CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhH--HHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 7899999999999999999999888777665544444432 3222 6777788888888 887766655555443333
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----EEEEEe--cCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 232 VSAVCFHPELPIIITGSEDGTVRIWHATTYR-----LENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 232 v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~--~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
..-+ -.-|+.+++......+.+|-- .+. .+..+. ...+..++++.-|-..-+..|.+.|.|.+
T Consensus 963 ahfl--qsvgpSLV~a~~Gn~lgVYad-~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 963 AHFL--QSVGPSLVTAQNGNILGVYAD-SAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhh--hccCceeEEeccCcEEEEEec-chhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2211 123456666666666777741 111 111111 12356778888888877888888888764
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=9e-09 Score=101.74 Aligned_cols=161 Identities=15% Similarity=0.209 Sum_probs=120.6
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCce----eEEeeecCCCEEEEEEeCCCCEEEEE---eCCCeEEEEECCCC
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM----AKSFEVTELPVRSAKFVARKQWVVAG---ADDMFIRVYNYNTM 89 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iw~~~~~ 89 (871)
.+..+..+|++++||++..+....++++..... ..... -....+++.|..+.....++ ++...+.+|+...+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445566788999999998888877777665432 22222 22334555665555555544 44556677776654
Q ss_pred cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEE
Q 002881 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 169 (871)
.. ..+-+|-+.++.++|+||+++|+++..|..|++-.......+.....||+..|..++.-+ +..|++++.|+++++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRL 219 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEE
Confidence 33 344579999999999999999999999999999988876566677789999999999986 667999999999999
Q ss_pred EECCCCCCeEEE
Q 002881 170 WNLGSPDPNFTL 181 (871)
Q Consensus 170 ~d~~~~~~~~~~ 181 (871)
||+.+++...++
T Consensus 220 Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 220 WDITSGKLLDTC 231 (390)
T ss_pred EecccCCccccc
Confidence 999999877554
No 294
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=2.1e-06 Score=84.50 Aligned_cols=257 Identities=11% Similarity=0.118 Sum_probs=166.7
Q ss_pred CCeEEEEeCCCCcee-E--EeeecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCC--CcEE--EEEccCCCCeEEE
Q 002881 36 SGTVCIWNYQSQTMA-K--SFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNT--MDKV--KVFEAHTDYIRCV 105 (871)
Q Consensus 36 dg~v~iwd~~~~~~~-~--~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~--~~~~~~~~~i~~i 105 (871)
+.-|.+|++.+..-. . ..-...+.++-++|+|+++.|.++.. +|.|.-|.++. |+.. ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456999998743211 1 11235567899999999999998865 46777777764 4432 2222233445889
Q ss_pred EEcCCCCEEEEEEC-CCeEEEEECCCCceEEEE--eecCCcc----------eEEEEEecCCCCEEEEEEC-CCcEEEEE
Q 002881 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI--FEGHSHY----------VMQVTFNPKDTNTFASASL-DRTIKIWN 171 (871)
Q Consensus 106 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~~~----------v~~~~~~p~~~~~l~~~~~-dg~i~i~d 171 (871)
++++++++++++.. .|.|.++-++....+... ...|.+. +....+.| +++++++.+. --.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEE
Confidence 99999999998865 588999988653222221 2223333 77889999 7888887765 34799999
Q ss_pred CCCCCCeEEE---ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-ce---EEEecC------cccCeEEEEEc
Q 002881 172 LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SC---VQTLEG------HTHNVSAVCFH 238 (871)
Q Consensus 172 ~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~---~~~~~~------~~~~v~~i~~~ 238 (871)
+..+.....- -....+...|.|+|+++- ..++.--+++|.+|.+... .. ++++.. .......|..+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~-aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKY-AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcE-EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9865432211 134456789999999983 2334445889999998763 22 232221 23356789999
Q ss_pred CCCCEEEEEEC-CCcEEEEeCC--CCeEE--EEEecCCccEEEEEEeeCCCeEEEEEcCCe
Q 002881 239 PELPIIITGSE-DGTVRIWHAT--TYRLE--NTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 239 p~~~~l~~~~~-dg~v~iwd~~--~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
|+|++|.++.. ...|.+|.+. ++++. .....+........+++.+++|+++..++-
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 99999988753 2367777654 34322 222333334678899999999998876653
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.8e-09 Score=108.43 Aligned_cols=242 Identities=13% Similarity=0.164 Sum_probs=166.8
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 122 (871)
+..+.+|...|+.++-..+.+-+++++.|++|++|.++. ..+..++..|+.+|..+.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345678888888888777888899999999999999863 33567788999999999999988777754 789
Q ss_pred EEEEECCCCceEEEEeec-CCcceEEEEEecC-CCCEEEE-EECCCcEEEEECCCCCCeEEEe-----cCCCCeeEEEEe
Q 002881 123 IKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPK-DTNTFAS-ASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVDYF 194 (871)
Q Consensus 123 i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~ 194 (871)
|.+||.--+....+.... ..+.+..+..-|+ +..+++. ++...+|+++|.++......++ +....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999998765333322211 1122222322232 3344444 4788999999999887665553 334557899999
Q ss_pred ecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEE-EeCCCCeEEEEEecCCcc
Q 002881 195 TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI-WHATTYRLENTLNYGLER 273 (871)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~ 273 (871)
+.|+ .++++-++|.|.+.|.++|..+...+........++ .|..+.++....|.++.+ |....+......+.+..+
T Consensus 886 ~~GN--~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 886 DKGN--KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred cCcc--hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 8888 699999999999999999998887775554444443 344567777778889988 987777665555444332
Q ss_pred EEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 274 VWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 274 i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
..-+. .-|..++++.....+.++
T Consensus 963 ahflq--svgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 963 AHFLQ--SVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred hhhhh--ccCceeEEeccCcEEEEE
Confidence 21111 124556666555555553
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.96 E-value=1.5e-06 Score=82.90 Aligned_cols=234 Identities=11% Similarity=0.150 Sum_probs=137.9
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCC--ceeEEeeecC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 21 VDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVTE---LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 21 i~~s~~~~~la~~~~dg~v~iwd~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
++.+++|+.||+.. |..|.|=..++. ..+...+.++ ..-+-++||||+..||.+...|+|+++|+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 56788999877764 778888765543 3334444333 346889999999999999999999999987533 3333
Q ss_pred cc-------CCCCeEEEEEcCCC------CEEEEEECCCeEEEEECCC----CceEEEEee---cCCcceEEEEEecCCC
Q 002881 96 EA-------HTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDWEK----GWMCTQIFE---GHSHYVMQVTFNPKDT 155 (871)
Q Consensus 96 ~~-------~~~~i~~i~~~~~~------~~l~~~~~dg~i~iwd~~~----~~~~~~~~~---~~~~~v~~~~~~p~~~ 155 (871)
.. -...|..+.|-+.. ..|++-..+|.++-|-+.. +......+. .+...|.++.|+| ..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KH 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CC
Confidence 21 23457777775432 2466667778887776532 222222222 2466899999999 66
Q ss_pred CEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEE-EEEeCCC------eEEEEECCCCceEEEecCc
Q 002881 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL-ITGSDDH------TAKVWDYQTKSCVQTLEGH 228 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~~~~~dg------~i~v~d~~~~~~~~~~~~~ 228 (871)
++|++|+.... +.+. ..+...++++-..-.+..- +. ++...++ +..+|.+-+..........
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py-yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY-YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc-EEEccccCccccccccccceeeccceeeeeccccC
Confidence 77777764322 0000 0111222222221111110 11 1111111 1123332222221111224
Q ss_pred ccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 002881 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (871)
Q Consensus 229 ~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (871)
...|..+..||||..|++...+|.|.+|++.+-++.....
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 5679999999999999999999999999998776655444
No 297
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=1.2e-05 Score=75.22 Aligned_cols=144 Identities=12% Similarity=0.002 Sum_probs=98.6
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~ 106 (871)
..+++.|+..+.+.--|..+|++.-.-. ...++.+-+.- -|++++.|+..|.+++.+.++|.....+..-..--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577788889999999999998775432 22334433333 577899999999999999999988877764333223345
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 107 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
..+++..+..|+.|++.+..|.++. .+.-..+...+...+-+.+| ....+..+...|.+.--..+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC-CCceEEEEeccceEEEEccCC
Confidence 6678899999999999999999876 33333332333334455666 455566666667665555443
No 298
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=7.1e-06 Score=80.92 Aligned_cols=249 Identities=12% Similarity=0.144 Sum_probs=164.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEeCCC--CceeEE--eeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEE
Q 002881 13 QRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQS--QTMAKS--FEVTELPVRSAKFVARKQWVVAGAD-DMFIRVY 84 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~---dg~v~iwd~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw 84 (871)
.+.+.++-++|+|++++|.++.. .|.|.-|.++. |++... ......+.+.++.+++|++++++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 46678899999999999998765 46788777764 544322 2223445588999999999999876 6899999
Q ss_pred ECCC-CcEEEE--EccCCCC----------eEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEE---eecCCcceEE
Q 002881 85 NYNT-MDKVKV--FEAHTDY----------IRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI---FEGHSHYVMQ 147 (871)
Q Consensus 85 ~~~~-~~~~~~--~~~~~~~----------i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~~v~~ 147 (871)
-++. |..... ...|.+. +.+..+.|++++|+++.- --.|.+|++..+ .+... ..........
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg-~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG-KLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC-ccccccccccCCCCCcce
Confidence 9865 433222 2234444 788999999999998753 237999999866 22221 1123345688
Q ss_pred EEEecCCCCEEEEE-ECCCcEEEEECCCC-CCeEEEe---------cCCCCeeEEEEeecCCcCEEEEEeC-CCeEEEEE
Q 002881 148 VTFNPKDTNTFASA-SLDRTIKIWNLGSP-DPNFTLD---------AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWD 215 (871)
Q Consensus 148 ~~~~p~~~~~l~~~-~~dg~i~i~d~~~~-~~~~~~~---------~~~~~i~~i~~~~~~~~~~l~~~~~-dg~i~v~d 215 (871)
+.|+| ++++..+. -.+++|.+|..+.. .....++ ........|..+++|+ +|.++.. ...|.+|.
T Consensus 196 i~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--FLYasNRg~dsI~~f~ 272 (346)
T COG2706 196 IVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--FLYASNRGHDSIAVFS 272 (346)
T ss_pred EEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC--EEEEecCCCCeEEEEE
Confidence 99999 67766554 45899999998764 2222221 1223456677888887 6665543 34677877
Q ss_pred CCC--Cce--EEEecCcccCeEEEEEcCCCCEEEEEECCC-cEEEEeC--CCCeEEE
Q 002881 216 YQT--KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHA--TTYRLEN 265 (871)
Q Consensus 216 ~~~--~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg-~v~iwd~--~~~~~~~ 265 (871)
+.. ++. +.....+........++|.+++|++++.++ .|.+|.. .+|++-.
T Consensus 273 V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 273 VDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 653 322 222233444467899999999999888654 5777754 4565443
No 299
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=1.6e-06 Score=104.00 Aligned_cols=235 Identities=10% Similarity=0.081 Sum_probs=157.2
Q ss_pred EEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcc--------------CCCCeEEEEEcCCCCEEEEEEC-CCeEE
Q 002881 61 RSAKFVAR-KQWVVAGADDMFIRVYNYNTMDKVKVFEA--------------HTDYIRCVAVHPTLPYVLSSSD-DMLIK 124 (871)
Q Consensus 61 ~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------~~~~i~~i~~~~~~~~l~~~~~-dg~i~ 124 (871)
..++++++ +..+++-+.++.|++||.. +..+..+.. +-.....+++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 4455555668899999976 454444432 1123578999998887776654 56799
Q ss_pred EEECCCCceEEEEeec-C---------------CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec-----
Q 002881 125 LWDWEKGWMCTQIFEG-H---------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA----- 183 (871)
Q Consensus 125 iwd~~~~~~~~~~~~~-~---------------~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 183 (871)
++|..++ ........ . -.....++++|.++.++++.+.++.|++||..++... .+.+
T Consensus 650 ~id~~~~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNE-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCC-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 9998876 33222110 0 1124678999966677777788899999998765422 1111
Q ss_pred ----------CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC---------------------cccCe
Q 002881 184 ----------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---------------------HTHNV 232 (871)
Q Consensus 184 ----------~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------------------~~~~v 232 (871)
.-.....++++|+++. ++++-+.++.|++||+.++.......+ .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~-LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKE-LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 1123467899998764 555666779999999987653211100 01134
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-------------CCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-------------GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 233 ~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
.+++++++|.++++-+.++.|++||..++........ .......++++++|+.+++-+.++.|+++.
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 6889999999888888999999999887765433221 113567899999999888888888888863
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=7.6e-09 Score=95.84 Aligned_cols=149 Identities=15% Similarity=0.280 Sum_probs=101.8
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCce-eEEeeecCCCEEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEccCC
Q 002881 26 SEPWILASLYSGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVARKQWVVAGA-----DDMFIRVYNYNTMDKVKVFEAHT 99 (871)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~ 99 (871)
.++.++++..||.+.+++.+.-.. ...+..-...--+.+....++.+.++. .-+..+.|+++..+....-....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 356799999999999999765211 111111111112223334455444432 12345666665433322222234
Q ss_pred CCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 100 DYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 100 ~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
+.|++++-+|.. ..+++|+.||.+.+||.+....+...+..|+.++..+.|+|+++..|++++.||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 459999999965 466788889999999999886777788899999999999999999999999999999999754
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.3e-08 Score=107.38 Aligned_cols=280 Identities=19% Similarity=0.220 Sum_probs=190.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC-CceeEEeee-cCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCC-
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEV-TELPVRSAKFVARK---QWVVAGADDMFIRVYNYNT- 88 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~---~~l~~~~~dg~i~iw~~~~- 88 (871)
.+.+.++..+|.|+-+|.++.-| +.+-|+.. +.+.+-+.. ..-.|-...|+|.. .++++.+ ...-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcC
Confidence 45688899999999899988776 44555543 343333321 12347778888753 3454444 44455898742
Q ss_pred --CcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002881 89 --MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 89 --~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (871)
......+.+|...|+.+-|+|+.+ .+++++.|-.+..||+++..........-...-..++|+-.+++.+++ +...
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~ 180 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGN 180 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCC
Confidence 233445678999999999999764 688999999999999998766665555555567889999877777765 4457
Q ss_pred cEEEEECCCC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceE-EEecCcccCeEEEEEcCCCCE
Q 002881 166 TIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV-QTLEGHTHNVSAVCFHPELPI 243 (871)
Q Consensus 166 ~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~i~~~p~~~~ 243 (871)
.|.+||++.+ .+...+++|-..|+.++|...... .+.+.+.||+|++||....... ........+|+.-++.|-|.-
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcceeccccccCce
Confidence 8999999875 466777888888888888654333 5889999999999998753321 112224556777777775542
Q ss_pred EEEEE--CCCcEEEE---------eCCC-CeEEEEEecCCccEEEEEEeeCCC----------eEEEEEcCCeEEEe
Q 002881 244 IITGS--EDGTVRIW---------HATT-YRLENTLNYGLERVWAIGYMKSSR----------RIVIGYDEGTIMVK 298 (871)
Q Consensus 244 l~~~~--~dg~v~iw---------d~~~-~~~~~~~~~~~~~i~~i~~~~~~~----------~l~~g~~dg~i~i~ 298 (871)
.++-- .+..+.++ +..+ .+.+..+.+|.+.|...-|...+. .|++-+.|..+++|
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 22211 12234333 3322 346788888888777666654332 68889999999998
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=9.1e-10 Score=118.08 Aligned_cols=266 Identities=14% Similarity=0.185 Sum_probs=184.1
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC--CeE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFI 81 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i 81 (871)
+|+..+.+..|....+|++|+-+.++|++|+..|.|++|++.+|.......+|.++|+-+.-+.+|..+++.+.- ...
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 466677888999999999999999999999999999999999999999999999999999999999988876653 356
Q ss_pred EEEECCC-CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC---CcceEEEEEecCCCCE
Q 002881 82 RVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH---SHYVMQVTFNPKDTNT 157 (871)
Q Consensus 82 ~iw~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~ 157 (871)
.+|++.+ +...++|.. -.++.|+....+-+.|+.-....+||++++..+...+.+. ...-.+..|+| ...+
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-Ccce
Confidence 7898763 444555542 4578888766555666666688999999985554433321 12236788999 4444
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~ 237 (871)
++ .|| .+||.+..+.+..+...... -.-.|+|.|.. ++..+ -|||+++.+.++..... .-+.+.|
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~e--VIINS-----EIwD~RTF~lLh~VP~L--dqc~VtF 1309 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNE--VIINS-----EIWDMRTFKLLHSVPSL--DQCAVTF 1309 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCce--EEeec-----hhhhhHHHHHHhcCccc--cceEEEe
Confidence 43 355 37999988777666433321 23358898874 55544 38999998877666533 2356788
Q ss_pred cCCCCEEEEEE--CC---------------CcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 238 HPELPIIITGS--ED---------------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 238 ~p~~~~l~~~~--~d---------------g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
+..|..+...- .| ...+-++...+..+.++... ..+..++-.|...++++-.
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhcCCccceEEEEe
Confidence 88887554332 00 12344454555555555544 4456666666666666543
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=5.4e-06 Score=83.59 Aligned_cols=218 Identities=10% Similarity=0.068 Sum_probs=146.5
Q ss_pred EEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCceEEEEee
Q 002881 62 SAKFVA-RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVH-PTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (871)
Q Consensus 62 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (871)
+..|.+ ++.++++-...+.|..|+..++.... +.... ...+++. ++ ..|+++...+ +.++|+.++ .......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCC-cEEEEee
Confidence 578998 56555665568999999998865543 33222 6778888 55 5666666654 555698887 3333333
Q ss_pred c-----CCcceEEEEEecCCCCEEEEEECC--------CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe
Q 002881 140 G-----HSHYVMQVTFNPKDTNTFASASLD--------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (871)
Q Consensus 140 ~-----~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~ 206 (871)
. .......+++.| ++++.++.... |.|..++.. ++. ......-...+.++|+|+++. ++++-+
T Consensus 78 ~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~-lyv~ds 153 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKT-LYVADS 153 (246)
T ss_dssp EETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSE-EEEEET
T ss_pred ccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchh-eeeccc
Confidence 2 345678899999 67766665543 557777776 333 333333455689999999873 445667
Q ss_pred CCCeEEEEECCCCce-------EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEE
Q 002881 207 DDHTAKVWDYQTKSC-------VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (871)
Q Consensus 207 ~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~ 279 (871)
..+.|..+++..... ...+....+..-.+++.++|++.++....+.|.+++.. |+.+..+..+...+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 788999999863221 22222222347889999999988888888999999976 9988888888678999999
Q ss_pred e-eCCCeEEEEE
Q 002881 280 M-KSSRRIVIGY 290 (871)
Q Consensus 280 ~-~~~~~l~~g~ 290 (871)
. ++.+.|.+.+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 4 6667776654
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=6.3e-06 Score=83.13 Aligned_cols=217 Identities=12% Similarity=0.113 Sum_probs=143.4
Q ss_pred EEEEcC-CCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Q 002881 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV-ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 20 ~i~~s~-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 97 (871)
++.|.+ ++.++++-...+.|..|+..++.... +.... ...+++. ++ ..|+++...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 56555555568999999988775433 33222 6778888 55 5566666655 45559988865544432
Q ss_pred -----CCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE-EEEEC
Q 002881 98 -----HTDYIRCVAVHPTLPYVLSSSDD--------MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF-ASASL 163 (871)
Q Consensus 98 -----~~~~i~~i~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~ 163 (871)
.......+++.|+|++.++.... |.|..++.. + ....... .-.....++|+| +++.| ++-+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVAD-GLGFPNGIAFSP-DGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEE-EESSEEEEEEET-TSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEec-CcccccceEECC-cchheeecccc
Confidence 34567889999999976665543 567777777 4 3333333 344578999999 66655 56677
Q ss_pred CCcEEEEECCCCCC-e---EEE---ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEE
Q 002881 164 DRTIKIWNLGSPDP-N---FTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (871)
Q Consensus 164 dg~i~i~d~~~~~~-~---~~~---~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~ 236 (871)
.+.|..+++..... . ..+ ....+....+++..+|+ +.++....+.|.+++.. |+.+..+......+++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~--l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN--LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC--EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 88899999864332 1 112 22222367788877775 67777789999999987 888888877666899999
Q ss_pred Ec-CCCCEEEEEE
Q 002881 237 FH-PELPIIITGS 248 (871)
Q Consensus 237 ~~-p~~~~l~~~~ 248 (871)
|. |+.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 5655555443
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=5.3e-07 Score=84.25 Aligned_cols=226 Identities=10% Similarity=0.000 Sum_probs=148.2
Q ss_pred EcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcEE-EEEccCCCCeEEE
Q 002881 34 LYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNTMDKV-KVFEAHTDYIRCV 105 (871)
Q Consensus 34 ~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~i~~i 105 (871)
+....|-+|+.-+.. .+..++ .+.|-| ...+|+.|+..|.+.+|...+.+.. .....|...|+-.
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred cceeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 345567788876543 333332 344444 4568999999999999999865543 2333444433322
Q ss_pred EEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-e-E-EE
Q 002881 106 AVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-N-F-TL 181 (871)
Q Consensus 106 ~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~-~-~~ 181 (871)
.=..+ ...+..++.|.++++.+++.+. .........-.+.+++++| ++..+++.+....|-.|.+..... + . ..
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDS-NKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCc-ccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 11111 2347778888888888887652 2222211112378899999 899999999999999999865432 2 2 22
Q ss_pred ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-E----EEecCcccCeEEEEEcCCCC--EEEEEECCCcEE
Q 002881 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-V----QTLEGHTHNVSAVCFHPELP--IIITGSEDGTVR 254 (871)
Q Consensus 182 ~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~----~~~~~~~~~v~~i~~~p~~~--~l~~~~~dg~v~ 254 (871)
......-.+..|+.... .+++++.||.+.|||++.... . .+-..|.+.+..+.|+|.|. +|+..-.-+.+.
T Consensus 200 a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred cccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 23334446777877655 699999999999999986432 2 22245788999999998664 555555567899
Q ss_pred EEeCCCCeEEEEEecC
Q 002881 255 IWHATTYRLENTLNYG 270 (871)
Q Consensus 255 iwd~~~~~~~~~~~~~ 270 (871)
+.|+++++....+...
T Consensus 278 v~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIP 293 (344)
T ss_pred EEEcccCceeeEEecC
Confidence 9999999866655443
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=1.4e-06 Score=87.78 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=144.5
Q ss_pred CCeEEEEeCCCCceeEEeeecC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCE
Q 002881 36 SGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
+|+|..||..+|+.+-...... ....+. ..+++..+++++.++.|..||..+|+.+..+.. .+.+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999888776421 122211 344677788889999999999999999888764 22222111 223557
Q ss_pred EEEEECCCeEEEEECCCCceEEEEeecCC---cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCe--
Q 002881 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHS---HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV-- 188 (871)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-- 188 (871)
+++++.++.|..+|..++...-....... .......... .++.++++..++.|..+|+.+++.+..........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 78888889999999998855444222221 1112222222 36788888889999999999999887776543221
Q ss_pred --------eEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002881 189 --------NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 189 --------~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
..-... .+. .+++++.++.+..+|..+++.+.... ...+.. ...+.+..+++++.++.|..||+.+
T Consensus 158 ~~~~~~~~~~~~~~-~~~--~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 158 PISSFSDINGSPVI-SDG--RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEETTEEEEEEC-CTT--EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ceeeecccccceEE-ECC--EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 111111 122 57777777754444999998765333 222222 1456677888888999999999999
Q ss_pred CeEEEE
Q 002881 261 YRLENT 266 (871)
Q Consensus 261 ~~~~~~ 266 (871)
|+....
T Consensus 232 G~~~W~ 237 (238)
T PF13360_consen 232 GKVVWQ 237 (238)
T ss_dssp TEEEEE
T ss_pred CCEEeE
Confidence 987654
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.86 E-value=7.3e-06 Score=87.86 Aligned_cols=184 Identities=17% Similarity=0.234 Sum_probs=95.0
Q ss_pred ccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe-cCCCcceEE
Q 002881 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK-IGREEPVAS 307 (871)
Q Consensus 229 ~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~-~~~~~~~~~ 307 (871)
...+..+.++|+|+++++++ ||.-.++.....+.... +.-...+|.+. +.+|+-..++.|.+. ...+..+..
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccceE
Confidence 34467899999999999965 78888888555554332 23346788884 446666656666662 111111000
Q ss_pred EeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeeccc--
Q 002881 308 MDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR-- 385 (871)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~-- 385 (871)
+. .. ..+..+-- |.+|.+.+++.+.+|+....+
T Consensus 105 i~----------------------------------~~--------~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i 139 (443)
T PF04053_consen 105 IK----------------------------------LP--------FSVEKIFG---GNLLGVKSSDFICFYDWETGKLI 139 (443)
T ss_dssp -------------------------------------S--------S-EEEEE----SSSEEEEETTEEEEE-TTT--EE
T ss_pred Ec----------------------------------CC--------cccceEEc---CcEEEEECCCCEEEEEhhHccee
Confidence 00 00 00112221 888988888889999876554
Q ss_pred -ccCcCceeEEEEecCCcEEEEecCCeEEEeecccccceeeecCccceeeecCcEEEEEeCCeEEEEeccCCcEEEEEEc
Q 002881 386 -NRSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDV 464 (871)
Q Consensus 386 -~~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~s~~~i~~~~~La~~~~~~v~~~d~~~~~~~~~~~~ 464 (871)
......+..+.|+++|.+++..++..+.|++.+...... ...++ -.+ .-+.+.++..
T Consensus 140 ~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~----~~~~g----------~e~--------~f~~~~E~~~ 197 (443)
T PF04053_consen 140 RRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA----IPEEG----------VED--------AFELIHEISE 197 (443)
T ss_dssp EEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH----BTTTB-----------GG--------GEEEEEEE-S
T ss_pred eEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhccc----ccccC----------chh--------ceEEEEEecc
Confidence 222334688999999999888888888887655442221 00110 000 1123445566
Q ss_pred ceeEEEEcCCCCEEEEEeCCeEEE
Q 002881 465 TVKNLYWADSGDLVAIASDTSFYI 488 (871)
Q Consensus 465 ~i~~i~~s~~~~~la~~~~~~~~~ 488 (871)
.|++..|..| .++.++....-+
T Consensus 198 ~IkSg~W~~d--~fiYtT~~~lkY 219 (443)
T PF04053_consen 198 RIKSGCWVED--CFIYTTSNHLKY 219 (443)
T ss_dssp --SEEEEETT--EEEEE-TTEEEE
T ss_pred eeEEEEEEcC--EEEEEcCCeEEE
Confidence 8899999887 566666664444
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.84 E-value=6.2e-08 Score=89.93 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=122.6
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCce------------eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTM------------AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
|+.+.++-+. .|+++..++.+..+....+.. .+.+..|..+-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5666666544 466766666665555433322 222223333322233334567799999999999998
Q ss_pred CCCCcEE-EEEc-cCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 86 YNTMDKV-KVFE-AHTDYIRCVAVHPTLPYVLSSS-----DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 86 ~~~~~~~-~~~~-~~~~~i~~i~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
.+....+ ..+. .|.+ -.+.+....++++.++. .-+..+.|+++............ ..|.+++-+|...+.+
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLV 195 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc-ccchhhhCCcccccEE
Confidence 7642111 1111 1111 11222233444444432 22456777776542222222222 3389999999888899
Q ss_pred EEEECCCcEEEEECCCCC-CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC
Q 002881 159 ASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
++|+.||.+.+||.+... +...+..|+.+++.+.|+|.... .|++++.||.+..||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~-~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE-HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-heeEecCCCcEEEEcCCC
Confidence 999999999999998864 44556789999999999997654 699999999999999764
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=7.6e-06 Score=88.88 Aligned_cols=258 Identities=11% Similarity=-0.038 Sum_probs=157.1
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCC--CEE-----EEE--EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL--PVR-----SAK--FVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~-----~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 97 (871)
+..+++++.+|.+.-+|..+|+.+-....... ... .+. -.-.+..++.++.+|.+.-+|.++|+.+.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 55778888889999999999988766543220 000 000 011456788888999999999999998877764
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcc----eEEEEEecCCCCEEEEEECCCcEEEEECC
Q 002881 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY----VMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (871)
........... +..+++++.+|.+.-+|.+++...-..-...... ..+.... +..++.++.+|.+..+|..
T Consensus 149 ~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 149 AGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEcCCCEEEEEEcc
Confidence 33211111222 4567788889999999999884433221111000 0011111 2357777889999999998
Q ss_pred CCCCeEEEecCCC-------CeeEEEEee--cCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 002881 174 SPDPNFTLDAHQK-------GVNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 174 ~~~~~~~~~~~~~-------~i~~i~~~~--~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l 244 (871)
+++.......... ....+..+| .++ .+++++.+|.+..+|..+|+.+...... ....+. ..+..+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~~~v 297 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDGGRI 297 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EECCEE
Confidence 8876655431110 000111111 122 5777788999999999999887665421 111222 235678
Q ss_pred EEEECCCcEEEEeCCCCeEEEEEecCCcc-EEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 245 ITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
+.++.+|.+..+|..+|+.+......... ..+... .+..|.+++.+|.+..
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 88888999999999999877654322111 112222 2556778888887765
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=5.4e-06 Score=90.01 Aligned_cols=259 Identities=12% Similarity=0.069 Sum_probs=160.2
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEE-E
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC-V 105 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-i 105 (871)
+..+++++.+|.+.-+|.++|+.+-...... .+.+--.. .+..+++++.+|.|.-+|..+|+.+..+......+.. .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 4467778889999999999998877665432 22211111 2456777888999999999999998877532111100 0
Q ss_pred EEcC--CCCEEEEEECCCeEEEEECCCCceEEEEeecCC---c---ceEEEEEec-CCCCEEEEEECCCcEEEEECCCCC
Q 002881 106 AVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---H---YVMQVTFNP-KDTNTFASASLDRTIKIWNLGSPD 176 (871)
Q Consensus 106 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~v~~~~~~p-~~~~~l~~~~~dg~i~i~d~~~~~ 176 (871)
.-+| .+..++.++.+|.+...|..++...-..-.... . ....+.-+| -.+..+++++.+|.+..+|..+++
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 0011 123577788899999999888733222110000 0 000111111 023567777889999999999988
Q ss_pred CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc-CeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 177 ~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
........ ....+.. .++ .++.++.+|.+..+|..+++.+........ ...+... .+..|++++.+|.|++
T Consensus 278 ~~W~~~~~--~~~~~~~--~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 278 IVWKREYG--SVNDFAV--DGG--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEEeecCC--CccCcEE--ECC--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 76554321 1111221 233 588888999999999999987765432111 1222222 2457888999999999
Q ss_pred EeCCCCeEEEEEecCCccEEE-EEEeeCCCeEEEEEcCCeEEE
Q 002881 256 WHATTYRLENTLNYGLERVWA-IGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 256 wd~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~g~~dg~i~i 297 (871)
.|..+|+.+.........+.+ ..+ .+..|.+++.+|.++.
T Consensus 350 ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 350 INREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred EECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 999999988877654333332 122 3457888899998765
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=4.6e-09 Score=112.83 Aligned_cols=218 Identities=17% Similarity=0.222 Sum_probs=160.7
Q ss_pred eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEE
Q 002881 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM--LIKLW 126 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--~i~iw 126 (871)
..+++..|+...+|++|+.+.+.|++|+..|.|++|++.+|........|..+|+.+.-+.+|..+++.+.-. ...+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 4456667888899999999999999999999999999999999999999999999999999998877665432 46789
Q ss_pred ECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE-e---cCCCCeeEEEEeecCCcCEE
Q 002881 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-D---AHQKGVNCVDYFTGGDKPYL 202 (871)
Q Consensus 127 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~i~~i~~~~~~~~~~l 202 (871)
+..+.....+.+.. -.++.|+. ....-+.|+......+||+.++.+..++ . +....-++..|+|..+ ++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~--LI 1245 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT--LI 1245 (1516)
T ss_pred ccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc--eE
Confidence 98764344444433 35678876 3444555666678899999998876653 2 1223337888999876 34
Q ss_pred EEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC
Q 002881 203 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 203 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~ 282 (871)
+ .|| .+||.+..+.++.+......+ .-.|||+|.-++..++ |||++|.++++.++.-. -..+.|+..
T Consensus 1246 l---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNst 1312 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNST 1312 (1516)
T ss_pred e---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccC
Confidence 3 344 479999888787776554332 3469999999988774 79999999887665432 245666666
Q ss_pred CCeE
Q 002881 283 SRRI 286 (871)
Q Consensus 283 ~~~l 286 (871)
|..+
T Consensus 1313 G~Vm 1316 (1516)
T KOG1832|consen 1313 GDVM 1316 (1516)
T ss_pred ccch
Confidence 5544
No 312
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=1.9e-07 Score=92.52 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=113.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----EEEEccCCCCeEEEEEcCCCCEEEEE---ECCCeEEEEECCCC
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVFEAHTDYIRCVAVHPTLPYVLSS---SDDMLIKLWDWEKG 131 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~---~~dg~i~iwd~~~~ 131 (871)
.+.....++.++.+|++..+....++++..... ..... -...-+.+.+-.+.....++ ++...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 345566788999999998888877777654332 22221 12223344444444444443 44556666666543
Q ss_pred ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCe
Q 002881 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (871)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~ 210 (871)
......+|-+.++.++|+| |++.++++..|..|++-.....-.+..+ -+|..-|..++..++. .|++|+.|++
T Consensus 143 --~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~---~LlS~sGD~t 216 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY---LLLSGSGDKT 216 (390)
T ss_pred --CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc---eeeecCCCCc
Confidence 3445568999999999999 7899999999999999887665444444 4688889999887654 4899999999
Q ss_pred EEEEECCCCceEEEec
Q 002881 211 AKVWDYQTKSCVQTLE 226 (871)
Q Consensus 211 i~v~d~~~~~~~~~~~ 226 (871)
|++||+.+|+++.++.
T Consensus 217 lr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCD 232 (390)
T ss_pred EEEEecccCCcccccc
Confidence 9999999999886654
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=2.6e-05 Score=77.25 Aligned_cols=233 Identities=12% Similarity=0.129 Sum_probs=157.1
Q ss_pred CCEEEEEEcCC-CCEEEEEEcCCe-EEEEeCCCCceeEEeeecCCCE--EEEEEeCCCCEEEEEeC-----CCeEEEEEC
Q 002881 16 ERVKSVDLHPS-EPWILASLYSGT-VCIWNYQSQTMAKSFEVTELPV--RSAKFVARKQWVVAGAD-----DMFIRVYNY 86 (871)
Q Consensus 16 ~~v~~i~~s~~-~~~la~~~~dg~-v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iw~~ 86 (871)
.+...++.+|+ ...++.+-.-|+ ..+||..+++....+....+.- -.-.||+||++|++.-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 45667999994 455666766554 8899999999888776544322 24689999999998633 589999999
Q ss_pred C-CCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCceEEE-Ee--ecCCcc
Q 002881 87 N-TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD------------------DMLIKLWDWEKGWMCTQ-IF--EGHSHY 144 (871)
Q Consensus 87 ~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~-~~--~~~~~~ 144 (871)
. +.+.+..+..|.-....+.+.|+|+.|+++.. +-++...|..++..+.+ .+ ..|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 77888888877777778999999988887631 23466666667643333 23 336678
Q ss_pred eEEEEEecCCCCEEEEEECCCc-------EEEEECCCCCCeEEE-------ecCCCCeeEEEEeecCCcCEEEEEeCCCe
Q 002881 145 VMQVTFNPKDTNTFASASLDRT-------IKIWNLGSPDPNFTL-------DAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (871)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~ 210 (871)
|..+++.+ ++..++..-..|. |-+++. ++....+ ......+-+|+++.++.. +.+++=..+.
T Consensus 165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~-ia~tsPrGg~ 240 (305)
T PF07433_consen 165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL-IAVTSPRGGR 240 (305)
T ss_pred eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE-EEEECCCCCE
Confidence 99999998 5555554443332 333332 2222222 233467889999988762 3345556789
Q ss_pred EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEE
Q 002881 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (871)
Q Consensus 211 i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iw 256 (871)
+.+||..+++.+.... -..+..++..+++ ++++.+ .|.+...
T Consensus 241 ~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG-~G~~~~~ 282 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSG-QGQLIRL 282 (305)
T ss_pred EEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCC-CccEEEc
Confidence 9999999999877665 3346778888777 555554 4554433
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.9e-07 Score=91.26 Aligned_cols=250 Identities=13% Similarity=0.157 Sum_probs=174.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC---CceeEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTM 89 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~ 89 (871)
|.+.|+.+.-.. .+++.+++.||.++.|.-.. -+.++.+..|.+.+.+++.+-++-.+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 667777766554 56899999999999998433 1344556678888999999999999999777 999999999876
Q ss_pred cEEEEEccCCCCeEEEEEcC-CC---CEEEEE-ECCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 90 DKVKVFEAHTDYIRCVAVHP-TL---PYVLSS-SDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~-~~---~~l~~~-~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
..+..++.. .....+.|.. .| ..|+++ -.+|.+.++|-.... .......-|..+|.++.++| .+..+++...
T Consensus 87 DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDI 164 (558)
T ss_pred chhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccc
Confidence 554333311 1112223322 22 134443 347899999987653 33444556899999999999 7888999999
Q ss_pred CCcEEEEECCC------CCCeEE---------EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec--
Q 002881 164 DRTIKIWNLGS------PDPNFT---------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-- 226 (871)
Q Consensus 164 dg~i~i~d~~~------~~~~~~---------~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-- 226 (871)
.|.|..|.... ...... +...+....++.++|++. .+.+-+.|..|+++++.+++.++.+.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~--qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA--QISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC--cccccCcccEEEEEEeccchhhhhhhcc
Confidence 99999999863 111111 122345678999999998 48888899999999999887654332
Q ss_pred ------------------------------Ccc-cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 002881 227 ------------------------------GHT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (871)
Q Consensus 227 ------------------------------~~~-~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (871)
.|. ..-+.++|...|++|+-|+.= -|++.++.+++..+.+..
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILGK 315 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEecc
Confidence 111 123556788888888888765 488888888887776643
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.68 E-value=5.4e-05 Score=75.04 Aligned_cols=227 Identities=14% Similarity=0.143 Sum_probs=151.3
Q ss_pred CEEEEEEeC-CCCEEEEEeCCC-eEEEEECCCCcEEEEEccCCCCeE--EEEEcCCCCEEEEEEC-----CCeEEEEECC
Q 002881 59 PVRSAKFVA-RKQWVVAGADDM-FIRVYNYNTMDKVKVFEAHTDYIR--CVAVHPTLPYVLSSSD-----DMLIKLWDWE 129 (871)
Q Consensus 59 ~v~~~~~~~-~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~--~i~~~~~~~~l~~~~~-----dg~i~iwd~~ 129 (871)
....++.+| ++..++.+-.-| ...+||..+++....+....+.-. ...||++|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 455556665555 577899999998887765444332 3689999999998643 5899999999
Q ss_pred CCceEEEEeecCCcceEEEEEecCCCCEEEEEEC------------------CCcEEEEECCCCCCeEEEe----cCCCC
Q 002881 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL------------------DRTIKIWNLGSPDPNFTLD----AHQKG 187 (871)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~----~~~~~ 187 (871)
.+......+..|.-....+.+.| ++..|+++.. +-.+...|..+++.+.+.. .|...
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 66566677777766667788999 6767776532 2346666777777665532 36678
Q ss_pred eeEEEEeecCCcCEEEEEe-CCC-------eEEEEECCCCceEEEec-------CcccCeEEEEEcCCCCEEEEEE-CCC
Q 002881 188 VNCVDYFTGGDKPYLITGS-DDH-------TAKVWDYQTKSCVQTLE-------GHTHNVSAVCFHPELPIIITGS-EDG 251 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~-~dg-------~i~v~d~~~~~~~~~~~-------~~~~~v~~i~~~p~~~~l~~~~-~dg 251 (871)
|..+++.+++. ++.+. ..| .|.+++. ++.+..+. ...+.+-+|++++++..+++.| .-|
T Consensus 165 iRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 165 IRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred eeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 89999988875 44443 222 2444443 22222222 2346789999999998776655 667
Q ss_pred cEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeE
Q 002881 252 TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i 295 (871)
.+.+||..+++.+...... .+..++..+++ +++.+..|.+
T Consensus 240 ~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~--f~~ssG~G~~ 279 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVPLP--DACGVAPTDDG--FLVSSGQGQL 279 (305)
T ss_pred EEEEEECCCCCEeeccccC--ceeeeeecCCc--eEEeCCCccE
Confidence 8999999999988776544 34556665555 4444444443
No 316
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.67 E-value=5.1e-06 Score=88.63 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=132.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEE-eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 92 (871)
|..+|.--+++..+++++.|++.|.+.+|+-..+...+. ..+..+.+..+..+++..++|.|+..|.|.++-++.+.+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 556777777888899999999999999999666654332 2234556777788899999999999999999987764321
Q ss_pred -----EEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---ceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 93 -----KVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 93 -----~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
... ..|...|++++|++++..+++|...|.|..-.+.+. ....+.+....+.|..+.... .++++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q---~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ---SYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc---ceehHhhh
Confidence 111 247889999999999999999999999999888761 112233334567788888763 34444444
Q ss_pred CCcEEEEECCCCCCeEEEe-cCCCC-eeEEEEeec---CCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 164 DRTIKIWNLGSPDPNFTLD-AHQKG-VNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~-~~~~~-i~~i~~~~~---~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
-..+ +++.+..+..+.-+ ..++. -...+|.|. ++.+.|+++--.+.+..-|+. |..+.+.
T Consensus 189 ~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~-G~V~~Th 253 (726)
T KOG3621|consen 189 TRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFA-GEVIKTH 253 (726)
T ss_pred hhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecc-eeEEEee
Confidence 3333 44544332111111 11121 234556665 345566666555444333443 5544443
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=0.00016 Score=67.80 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=115.1
Q ss_pred CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeE
Q 002881 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (871)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 190 (871)
..+++.|+..+.+.--|..++...-....+ .+|.+-+.- -++.++.|+..|.+++.+.+++.....+.....--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 356778888888888888887443333222 233333333 2567999999999999999999877766543322122
Q ss_pred EEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEEe
Q 002881 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--LENTLN 268 (871)
Q Consensus 191 i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~ 268 (871)
....+++. ++..|+.|+..+..|.++..++...+-..+...+-+..|....|..+...|.|.--+.+++. ......
T Consensus 99 a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~ 176 (354)
T KOG4649|consen 99 AQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT 176 (354)
T ss_pred eEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh
Confidence 33444554 89999999999999999999988877555555566677733344444555665555545442 222111
Q ss_pred cCCccEEE--EEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEE
Q 002881 269 YGLERVWA--IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWA 317 (871)
Q Consensus 269 ~~~~~i~~--i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 317 (871)
.. +++.+ ++. ++.+..++-||.+.- +++.|+.+|.
T Consensus 177 ~~-~PiF~splcv---~~sv~i~~VdG~l~~----------f~~sG~qvwr 213 (354)
T KOG4649|consen 177 RF-GPIFASPLCV---GSSVIITTVDGVLTS----------FDESGRQVWR 213 (354)
T ss_pred cC-CccccCceec---cceEEEEEeccEEEE----------EcCCCcEEEe
Confidence 11 22221 111 455677777777654 4556666654
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.66 E-value=8.5e-07 Score=96.64 Aligned_cols=181 Identities=12% Similarity=0.134 Sum_probs=137.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEE
Q 002881 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (871)
Q Consensus 69 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 148 (871)
+..++.|+-...+..+|+++.+..+...-....++-|.. +++++.+|...|+|.+-|.++. ...+.+..|++.|..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC-ceeeeeeccccceeee
Confidence 455677777777888899887777666544445655554 4688999999999999999987 7888999999999887
Q ss_pred EEecCCCCEEEEEEC---------CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC--
Q 002881 149 TFNPKDTNTFASASL---------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-- 217 (871)
Q Consensus 149 ~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~-- 217 (871)
... ++.|++++. |.-|+|||++..+.+..+.-+.++ .-+.|+|.-.. .+++++..|...+.|..
T Consensus 224 Dv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 224 DVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred ecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEecccceeecccccc
Confidence 764 678888775 556899999887665554444333 56778886544 68888999999999943
Q ss_pred -CC-ceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 218 -TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 218 -~~-~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
+. .-+..+......+.+++++++++.++.|..+|.|.+|.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22 12333444455599999999999999999999999997
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=7.8e-07 Score=95.92 Aligned_cols=182 Identities=13% Similarity=0.184 Sum_probs=130.5
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 94 (871)
.+.+.|++++ +++++.|..+|.|++++.. +.. ++...|... ..+|.++++|+.||.|.|..+.+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456777776 6789999999999999964 444 333334433 67899999999999999999988887776
Q ss_pred EccCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECC--CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 95 FEAHTDYIRCVAVHPT-----LPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 95 ~~~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+.- ..++.+++++|+ .+.+++|+.-| +.++.-+ +. .....+....++|.++.|. +++++-++.+| |
T Consensus 109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v 181 (846)
T KOG2066|consen 109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-V 181 (846)
T ss_pred Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceeeecCccceEEEEec---CcEEEEecCCC-c
Confidence 653 457999999997 46789999888 7776532 22 1222455667899999996 67888777665 8
Q ss_pred EEEECCCCCCeEEEecCCCC------eeEEEEeecCCcCEEEEEeCCCeEEEEECC
Q 002881 168 KIWNLGSPDPNFTLDAHQKG------VNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~------i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~ 217 (871)
++||....+.+..+...... ...+.|.+... ++.|- ..+|++..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~---LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR---LVIGW-GDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe---EEEec-CCeEEEEEEe
Confidence 99999887766555433222 24577776543 55554 4578888876
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=7.5e-07 Score=97.06 Aligned_cols=181 Identities=14% Similarity=0.218 Sum_probs=140.5
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~ 106 (871)
+..++.|+-...+..+|+.+.+..+......+.|+-+. .+++.+++|...|+|.+-|.++.+.++++.+|++.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 34577777777888999999888887776665666555 4678899999999999999999999999999999998776
Q ss_pred EcCCCCEEEEEEC---------CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE---CCC
Q 002881 107 VHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN---LGS 174 (871)
Q Consensus 107 ~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d---~~~ 174 (871)
.+ |+.|++||. |..|++||++.-+.+ ..+.-+.++ .-+.|.|.-...+++++..|...+-| +.+
T Consensus 225 v~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 VQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred cc--CCeEEEeecccccccccccchhhhhhhhhhhcc-CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 65 788999875 557899999976332 222223332 55778887788999999999999999 443
Q ss_pred CC-CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEE
Q 002881 175 PD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (871)
Q Consensus 175 ~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d 215 (871)
.. .+.........+..++++++++ .++.|..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~--alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGD--ALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCc--eEEEecccCcEeeec
Confidence 32 2333444556688999999888 799999999999997
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.62 E-value=6e-05 Score=75.75 Aligned_cols=211 Identities=11% Similarity=0.029 Sum_probs=133.5
Q ss_pred CCCeEEEEECCCCcEEEEEccC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002881 77 DDMFIRVYNYNTMDKVKVFEAH--TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (871)
Q Consensus 77 ~dg~i~iw~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (871)
++|.|..||..+|+.+.....- .....+. ..+++..+++++.++.|..||..++...-+.-.... +...... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~--~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPVV--D 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEEE--E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceeee--c
Confidence 3689999999999998887531 1222222 233566888889999999999998844333322111 1111111 3
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeEEE-ecCC---CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc
Q 002881 155 TNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ---KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (871)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 230 (871)
++.+++++.++.+..+|..+++..... .... ...........++ .++++..++.|..+|.++|+.+........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD--RLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT--EEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC--EEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 567777778899999999999988874 3221 1112222333344 688888899999999999999887765332
Q ss_pred C----------eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 231 N----------VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 231 ~----------v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
. +..-....++ .++.++.+|.+..+|..+++...... ...+... ..+++..|++++.++.+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEE
Confidence 2 1222222344 77777778864444999999766443 2333331 45677888888888888775
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.60 E-value=3.7e-05 Score=81.87 Aligned_cols=263 Identities=13% Similarity=0.166 Sum_probs=152.8
Q ss_pred cCCCCEEEEEE---------cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 002881 24 HPSEPWILASL---------YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 24 s~~~~~la~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 94 (871)
|||+++++... ..+.+.|||+++++....... ...+....|||+|+.++... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68999888743 246799999999766543333 56789999999999999885 57899999877644322
Q ss_pred Ec-c-------C---------CCCeEEEEEcCCCCEEEEEECC-C-----------------------------------
Q 002881 95 FE-A-------H---------TDYIRCVAVHPTLPYVLSSSDD-M----------------------------------- 121 (871)
Q Consensus 95 ~~-~-------~---------~~~i~~i~~~~~~~~l~~~~~d-g----------------------------------- 121 (871)
-. + - -+.-..+-||||+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 21 1 0 1123568899999988864322 1
Q ss_pred eEEEEECCCCceEE-EEe---ecCCcceEEEEEecCCCCEEEEEECC--C---cEEEEECCCCCCeEEEec-CCCC---e
Q 002881 122 LIKLWDWEKGWMCT-QIF---EGHSHYVMQVTFNPKDTNTFASASLD--R---TIKIWNLGSPDPNFTLDA-HQKG---V 188 (871)
Q Consensus 122 ~i~iwd~~~~~~~~-~~~---~~~~~~v~~~~~~p~~~~~l~~~~~d--g---~i~i~d~~~~~~~~~~~~-~~~~---i 188 (871)
.+.++|+.++.... ... ......+..+.|.+ ++..|+..-.+ . .+.++|..++........ ...- -
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 23444555442211 111 13456788999998 55534443332 2 366778877655433322 1221 2
Q ss_pred eEEEEe-ecCCcCEEEEEeCCCe--EEEEECCCCceEEEecCcccCeEE-EEEcCCCCEEE-EEECC----CcEEEEeCC
Q 002881 189 NCVDYF-TGGDKPYLITGSDDHT--AKVWDYQTKSCVQTLEGHTHNVSA-VCFHPELPIII-TGSED----GTVRIWHAT 259 (871)
Q Consensus 189 ~~i~~~-~~~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~v~~-i~~~p~~~~l~-~~~~d----g~v~iwd~~ 259 (871)
....+. +++.. ++.....+|. |.+++...+. ...+....-.|.. +.|+++++.|. ++..+ ..|...++.
T Consensus 238 ~~~~~~~~~~~~-~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 238 DPPHFLGPDGNE-FLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SEEEE-TTTSSE-EEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccccccCCCCE-EEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 344554 55554 6666667765 5555665444 4455545556754 67888877555 44432 246666666
Q ss_pred CCeEEEEEecCCccEEEEEEeeCCCeEEEEEc
Q 002881 260 TYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 260 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
.+.....+....+.-..+.+||++++++..+.
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 23344455544333368999999999887654
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=7.7e-06 Score=89.11 Aligned_cols=204 Identities=13% Similarity=0.262 Sum_probs=139.2
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCC-EEEEEEeCCCCEEEEEeCCC-----eEEEEECCCC-----
Q 002881 21 VDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP-VRSAKFVARKQWVVAGADDM-----FIRVYNYNTM----- 89 (871)
Q Consensus 21 i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~----- 89 (871)
-+|++.+..++.|+.+|.|.+++ +..+.++.+..+... |..+....+..+|++.+.|+ .|+||+++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 34778888999999999999998 566666788887776 44444444447788777654 5999998632
Q ss_pred -cEE---EEEc----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCc-eEEEEeecCCcceEEEEEecCCCCEE
Q 002881 90 -DKV---KVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGW-MCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 90 -~~~---~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~--~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
.++ +.+. ....++++++.+.+-+.+++|-.+|.|..+.-+ ..+ ...........+|+.+.+.. ++..+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCcee
Confidence 222 1121 135678999999999999999999999998532 111 12223334567899999987 45542
Q ss_pred EEEECCCcEEEEECCCCCCeE-EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-Ccc
Q 002881 159 ASASLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHT 229 (871)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~ 229 (871)
+.+.....|.+|.+.+..|.. .+..+..+++|..+++.... +++++ +..+.+|+.....+..++. ++.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q--fIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ--FICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc--EEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 333334689999998555443 47778888999998876542 44444 3479999987665555555 443
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=2.6e-07 Score=89.44 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=114.6
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----ceEEEEeecCCcceEEE
Q 002881 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----WMCTQIFEGHSHYVMQV 148 (871)
Q Consensus 73 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~ 148 (871)
++.+.+-.|-+-|+.||... .|. .++.|.++.|...++.++.|..+|.|...|++.. ..+.+ ..-|.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~-rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ-RLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE-EEEcCcchhhh
Confidence 34445566888888876543 333 4567889999998999999999999999999854 12222 22477889988
Q ss_pred EEecCCCCEEEEEECCCcEEEEECCCCCC---eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 149 TFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
..-..++..|.+.+.+|+|++||++.-+. +.+..+|-..-.-+-++-+.....++++++|...+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 76654678999999999999999987666 677777755444344444444558999999999999999999998887
Q ss_pred cCc
Q 002881 226 EGH 228 (871)
Q Consensus 226 ~~~ 228 (871)
+..
T Consensus 385 pf~ 387 (425)
T KOG2695|consen 385 PFP 387 (425)
T ss_pred CCC
Confidence 644
No 325
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.57 E-value=0.00064 Score=73.70 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=87.6
Q ss_pred ccceeeeeccCCHHHHHHHHHHcCC-hH--------------H--------HHHHHHHHH-HcCC----hhhHHHHHHHc
Q 002881 643 DYRFELAIQLGRLEVAQEIATEVQS-ES--------------K--------WKQLGELAM-STGK----LEMAEGCMKQA 694 (871)
Q Consensus 643 ~~~f~~~l~l~~~~~A~~~~~~~~~-~~--------------~--------w~~la~~al-~~~~----~~~A~~~y~~~ 694 (871)
+.-|+.||.|-+...|+-+|++.+- |+ + +-..=+.|+ ...+ ++.-.+.-.+-
T Consensus 825 n~~~~~aLsLyd~slalliaq~sqkdpReylpfl~e~qd~e~lrrkf~Id~yl~~ye~ALghl~E~~n~~~Ev~~yi~~h 904 (1243)
T COG5290 825 NFFNEFALSLYDKSLALLIAQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNEDLNVIREVMKYICRH 904 (1243)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhccCchhhhhHHHHhhhhHHHHhHhchhhhHHHHHHHHHhhHhHHHHHHHHHHHHHhc
Confidence 3445888888888888888876432 11 0 000011111 1111 22222223344
Q ss_pred CCcchhHHHHHhcCCHHHH--HHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHH
Q 002881 695 MDLSGLLLLYSSLGDAEGI--SKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA 772 (871)
Q Consensus 695 ~d~~~l~~l~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~~~~~~~ 772 (871)
.-|+.++.+|+-.|..+.. .--|......+.++.|..+|.-.|++.||...|..+++|.++.-++..-.++.+....+
T Consensus 905 dly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~~~AE 984 (1243)
T COG5290 905 DLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFNLCAE 984 (1243)
T ss_pred cchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHHHHHH
Confidence 5677888888887765543 33456667788899999999999999999999999999999998888777766555444
Q ss_pred HHHH
Q 002881 773 IWRK 776 (871)
Q Consensus 773 ~~~~ 776 (871)
....
T Consensus 985 ~L~S 988 (1243)
T COG5290 985 LLPS 988 (1243)
T ss_pred hhhh
Confidence 3333
No 326
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.56 E-value=6.9e-05 Score=71.87 Aligned_cols=222 Identities=11% Similarity=0.128 Sum_probs=125.7
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEE
Q 002881 63 AKFVARKQWVVAGADDMFIRVYNYNTM--DKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (871)
Q Consensus 63 ~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (871)
++.+++|+.||+.. |..|.|=..+.. ..+.... ...-.-+.++||||+..|+.+...|+|.++|+... .+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 45667888777663 455655544321 1222222 22234578999999999999999999999999864 33322
Q ss_pred eecC------CcceEEEEEecCC-----CCEEEEEECCCcEEEEECCCC-----CCeEE--Eec-CCCCeeEEEEeecCC
Q 002881 138 FEGH------SHYVMQVTFNPKD-----TNTFASASLDRTIKIWNLGSP-----DPNFT--LDA-HQKGVNCVDYFTGGD 198 (871)
Q Consensus 138 ~~~~------~~~v~~~~~~p~~-----~~~l~~~~~dg~i~i~d~~~~-----~~~~~--~~~-~~~~i~~i~~~~~~~ 198 (871)
-..+ ...|..+.|.+-. ...|++-...|.++-|-+..+ +.... +.. ...+|.++.|+|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 2222 3456666665411 335677777888877765322 22222 222 467899999998766
Q ss_pred cCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE--EEEECCC------cEEEEeCCCCeEEEEEecC
Q 002881 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII--ITGSEDG------TVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 199 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l--~~~~~dg------~v~iwd~~~~~~~~~~~~~ 270 (871)
+|++|+.... +++. .+.....+++-..-.+.++. ++...|+ +..+|.+-+.+........
T Consensus 161 --LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 161 --LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred --EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 6666654322 0000 00111222222222222211 1122121 1233333333322222334
Q ss_pred CccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 271 LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 271 ~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.+.|..++.||||+.||+..-+|.+.+|
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 5789999999999999999999999998
No 327
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=3.5e-07 Score=88.54 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=120.6
Q ss_pred EEcCC--CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC----CCeE
Q 002881 106 AVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP----DPNF 179 (871)
Q Consensus 106 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~----~~~~ 179 (871)
+|+-+ +-. ++.+.+..+-+-|++++ ..+.+. ..+.|.++.|.. .++++..|+.+|.|..+|++.. ....
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg--~~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETG--HQQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecc--cccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 66543 333 55566678889999987 233343 566788899986 6889999999999999999864 2222
Q ss_pred EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce---EEEecCcccCeEEE--EEcCCCCEEEEEECCCcEE
Q 002881 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC---VQTLEGHTHNVSAV--CFHPELPIIITGSEDGTVR 254 (871)
Q Consensus 180 ~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~~i--~~~p~~~~l~~~~~dg~v~ 254 (871)
..-.|...|+++..-...+. +|++.+.+|+|++||.+.-++ +.+..+|.+.-.-+ -.++....+++++.|...|
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEEEcCcchhhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 23358888888887663332 899999999999999997666 88888886654333 3456667899999999999
Q ss_pred EEeCCCCeEEEEEecCC
Q 002881 255 IWHATTYRLENTLNYGL 271 (871)
Q Consensus 255 iwd~~~~~~~~~~~~~~ 271 (871)
||.+..+.++.+++.+.
T Consensus 372 iWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEecccCceeeccCCCC
Confidence 99999999999887654
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.3e-05 Score=79.61 Aligned_cols=252 Identities=10% Similarity=0.105 Sum_probs=147.0
Q ss_pred ChhhhhhhcccCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002881 3 LRLEIKRKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (871)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 80 (871)
+.|+-...+.+|...|..++|||... ++..++.+.+|.|.|+++...+..+..+ .++.+++|.-|. ++|..|..+|.
T Consensus 181 ~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 181 HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 34444556778888999999999877 6777888999999999999998888877 789999998765 56778888999
Q ss_pred EEEEECCCCcE-EEEEcc--CCCCeEEEEE------cCCCCEEEEEECCCeEEEEECCCCceE-EEEe-ecCCcceEEEE
Q 002881 81 IRVYNYNTMDK-VKVFEA--HTDYIRCVAV------HPTLPYVLSSSDDMLIKLWDWEKGWMC-TQIF-EGHSHYVMQVT 149 (871)
Q Consensus 81 i~iw~~~~~~~-~~~~~~--~~~~i~~i~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~~~v~~~~ 149 (871)
|.|||+...+- ...+.+ ...+|..++. .+.+.+|+..+.+ +..|.+...... ..+. ....+...++.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999975432 111111 1223333332 2334445444443 456665432111 1111 12244556666
Q ss_pred EecCCCCEEEEEECCC------cEEE-EECCCCCCeEEEe-cCCC----Ce--eEEEEeecCCcCEEEEEeCCCeEEEEE
Q 002881 150 FNPKDTNTFASASLDR------TIKI-WNLGSPDPNFTLD-AHQK----GV--NCVDYFTGGDKPYLITGSDDHTAKVWD 215 (871)
Q Consensus 150 ~~p~~~~~l~~~~~dg------~i~i-~d~~~~~~~~~~~-~~~~----~i--~~i~~~~~~~~~~l~~~~~dg~i~v~d 215 (871)
+.+..+..+++.-.+. .|.. -|-..+.++...+ .+.+ ++ ....+.+..+..++.++.+.+.+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 7664444555443321 1111 1112222221111 1100 00 011121222232445566678999999
Q ss_pred CCCCceEEEecCcccCeEEEEEcC-CC-CEEEEEECCCcEEEEeCC
Q 002881 216 YQTKSCVQTLEGHTHNVSAVCFHP-EL-PIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~i~~~p-~~-~~l~~~~~dg~v~iwd~~ 259 (871)
..+.+.++++.. ..+|..++... ++ .+|++-. |..++||..+
T Consensus 418 ~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 999999998874 47787777554 23 3666655 5588888643
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.39 E-value=1.2e-06 Score=58.78 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=36.6
Q ss_pred CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
++.+.++.+|..+|++++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
No 330
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.39 E-value=1.1e-06 Score=59.01 Aligned_cols=39 Identities=31% Similarity=0.531 Sum_probs=36.7
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
++++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357888999999999999999999999999999999997
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.2e-05 Score=78.11 Aligned_cols=249 Identities=11% Similarity=0.041 Sum_probs=146.3
Q ss_pred EEEEeCCCCceeEEeeecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCC-CEEEE
Q 002881 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLS 116 (871)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~ 116 (871)
|++.+..+.+....+..+...|+.++|||... .+..++.+..|.|.|+++...+..+..+ ..+++++|.-+. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555555566778899999999877 6888899999999999999888888887 789999999865 56778
Q ss_pred EECCCeEEEEECCCCceEEEEeec--CCcceEEEEEecC-----CCCEEEEEECCCcEEEEECCC--CCCeEEEe-cCCC
Q 002881 117 SSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPK-----DTNTFASASLDRTIKIWNLGS--PDPNFTLD-AHQK 186 (871)
Q Consensus 117 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~-----~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~-~~~~ 186 (871)
|...|.|.+||++........+.+ ...+|..++.-+. .+..++..+. .+..|.... +.....++ ...+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence 888999999999976433333322 2344555444331 2333333332 234454432 22222222 2244
Q ss_pred CeeEEEEeecCCcCEEEEEeCCC------eEEE-EECCCCceEEEec-Cc-cc---Ce---EEEEEcCCCCEEE-EEECC
Q 002881 187 GVNCVDYFTGGDKPYLITGSDDH------TAKV-WDYQTKSCVQTLE-GH-TH---NV---SAVCFHPELPIII-TGSED 250 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~dg------~i~v-~d~~~~~~~~~~~-~~-~~---~v---~~i~~~p~~~~l~-~~~~d 250 (871)
...++++.+..+. ++++.-.+. .+-. .|..+|.++...+ ++ .. ++ ..+.-.++.++++ +|.+.
T Consensus 332 ~cismqy~~~snh-~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 332 ICISMQYHGVSNH-LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred ceeeeeecCccce-EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 4555555554442 333332221 1111 1223344433221 11 00 00 1122234445444 45566
Q ss_pred CcEEEEeCCCCeEEEEEecCCccEEEEEEeeC--CCeEEEEEcC
Q 002881 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKS--SRRIVIGYDE 292 (871)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~g~~d 292 (871)
+.+.+||..+++.+.++... .+|..++...- +.+|++-+++
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~ 453 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDD 453 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecc
Confidence 78999999999999998877 77877776542 4455555444
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.38 E-value=0.0035 Score=64.53 Aligned_cols=243 Identities=9% Similarity=0.016 Sum_probs=119.0
Q ss_pred eCCCCceeEEeeecCCCE-----EEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEE
Q 002881 43 NYQSQTMAKSFEVTELPV-----RSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (871)
Q Consensus 43 d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 114 (871)
|..||..+..+....... +.=+|.++|+.|+.+++ ..++.+.|+.+++..+.-.+..+......++|+++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 566777777776443322 23367889988777665 4578888999987765544332333357778888888
Q ss_pred EEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-----------------------CCcEEEEE
Q 002881 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-----------------------DRTIKIWN 171 (871)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----------------------dg~i~i~d 171 (871)
+-......|.-.|+++. ....++......+-...|..+.+...+++.. ...|.-.|
T Consensus 96 ~Yv~~~~~l~~vdL~T~-e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTL-EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEETTTEEEEEETTT---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEECCCeEEEEECCcC-cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 76666678999999987 5556666666666667775423333333321 12355567
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC------CCeEEEEECCCCceEEEecCccc--CeEEEEEcCCCCE
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD------DHTAKVWDYQTKSCVQTLEGHTH--NVSAVCFHPELPI 243 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~--~v~~i~~~p~~~~ 243 (871)
+.+++....+. ...-+..+.++|.... +|+-|-+ |..|.+.+.. +.....+..+.. .+.-=-|.|+|..
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~-li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDPT-LIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEEE-EEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-
T ss_pred CCCCceeEEEe-cCccccCcccCCCCCC-EEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCE
Confidence 77766544443 4455677888886553 4444432 2244444543 444444443322 2334458999986
Q ss_pred EEEEE-----CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc
Q 002881 244 IITGS-----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 244 l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
|.--+ .+..|.-+|..+++....... .....+-.++||++++--+.
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCC
Confidence 65432 234577778888765443322 23445666788887665333
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.37 E-value=0.00077 Score=67.85 Aligned_cols=246 Identities=13% Similarity=0.165 Sum_probs=150.2
Q ss_pred EEEEcCCCCEEEEEEc----------CCeEEEEeCCCCceeEEeeecCC-------CEEEEEEeCCCCEEEEEeC--CCe
Q 002881 20 SVDLHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-------PVRSAKFVARKQWVVAGAD--DMF 80 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~--dg~ 80 (871)
.+..+|+++.++++.. .-.|.+||..+-.....+..... ....++++.|++++++... -..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 3668999998887542 34699999999888776665432 2234678889998887644 567
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE----EeecCCcceE-EEEEecCCC
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ----IFEGHSHYVM-QVTFNPKDT 155 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~-~~~~~p~~~ 155 (871)
|.|.|+..++.+..+.... ...+-=++ ...+.+-+.||.+.-..+....+..+ .+.....++. .-.+.. .+
T Consensus 120 VtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DG 195 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TT
T ss_pred EEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CC
Confidence 8999999888887776432 22222122 24577888899998888874323222 2222222222 333444 45
Q ss_pred CEEEEEECCCcEEEEECCCCCCeEE--Eec----------CCCCeeEEEEeecCCcCEEEE-EeCCC-------eEEEEE
Q 002881 156 NTFASASLDRTIKIWNLGSPDPNFT--LDA----------HQKGVNCVDYFTGGDKPYLIT-GSDDH-------TAKVWD 215 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~--~~~----------~~~~i~~i~~~~~~~~~~l~~-~~~dg-------~i~v~d 215 (871)
..++..+.+|.|+--|+........ +.. ..++-.-+++++..+.-|++- .+.+| .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 5666678899999999877653321 211 112334466665544322211 11111 588999
Q ss_pred CCCCceEEEecCcccCeEEEEEcCCCC-EEEEE-ECCCcEEEEeCCCCeEEEEEecC
Q 002881 216 YQTKSCVQTLEGHTHNVSAVCFHPELP-IIITG-SEDGTVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~-~~dg~v~iwd~~~~~~~~~~~~~ 270 (871)
+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++.+.+||..+|+.+.++..-
T Consensus 276 ~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 276 LKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 999999988873 34677899998765 66554 45789999999999998887643
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.32 E-value=0.00043 Score=77.10 Aligned_cols=262 Identities=11% Similarity=0.125 Sum_probs=155.1
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCC------CEE--EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccC
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL------PVR--SAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 98 (871)
+..+.+++.++.|.-.|..+|+.+-.+..... .+. .+.. .++..++.++.+|.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34567777789999999999988766653322 110 0111 12367888899999999999999998887643
Q ss_pred CCC-----e-EEEEEcCCCCEEEEEE---------CCCeEEEEECCCCceEEEEeecCCc-------------------c
Q 002881 99 TDY-----I-RCVAVHPTLPYVLSSS---------DDMLIKLWDWEKGWMCTQIFEGHSH-------------------Y 144 (871)
Q Consensus 99 ~~~-----i-~~i~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~ 144 (871)
... + ....+. +..+++++ .+|.+.-+|..+++..-+.-..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 1 111222 24555554 3678899999888433322111110 0
Q ss_pred e-EEEEEecCCCCEEEEEECCC------------------cEEEEECCCCCCeEEEecCCCCee------EEEEe----e
Q 002881 145 V-MQVTFNPKDTNTFASASLDR------------------TIKIWNLGSPDPNFTLDAHQKGVN------CVDYF----T 195 (871)
Q Consensus 145 v-~~~~~~p~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~i~------~i~~~----~ 195 (871)
+ .+....+ ....++.++.++ .|.-+|..+++.....+....... ..... -
T Consensus 218 vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 218 SWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred ccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 1 1223333 356777777665 799999999988877643211110 01111 1
Q ss_pred cCC-cCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE------------------ECCCcEEEE
Q 002881 196 GGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG------------------SEDGTVRIW 256 (871)
Q Consensus 196 ~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~------------------~~dg~v~iw 256 (871)
++. ..++++++.+|.+...|..+|+.+....... ..+..+| ..+..+ ..+|.+.-.
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 121 1267888899999999999999987764221 1233444 233332 246789999
Q ss_pred eCCCCeEEEEEecCCc--------cEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 257 HATTYRLENTLNYGLE--------RVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 257 d~~~~~~~~~~~~~~~--------~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
|..+|+.+........ +...-.....+..|.+++.+|.++.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 9999998887765411 1111111224567777778887765
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=5.8e-05 Score=81.96 Aligned_cols=182 Identities=15% Similarity=0.204 Sum_probs=127.3
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEE
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (871)
..++|++++ ++.|+.|+-+|.|++++.+. .. .+...|+.. ..+|.++++|+.||.|.|-.+-+.....+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 345666664 57899999999999998763 33 333344443 567999999999999999998877433322
Q ss_pred eecCCcceEEEEEecC----CCCEEEEEECCCcEEEEECC--CCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeE
Q 002881 138 FEGHSHYVMQVTFNPK----DTNTFASASLDRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (871)
Q Consensus 138 ~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i 211 (871)
....++.+++++|+ ..+.+++|+.-| +.++.-+ +.+....+....++|.++.|. |+ +++-++++| |
T Consensus 110 --df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~--lIAWand~G-v 181 (846)
T KOG2066|consen 110 --DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN--LIAWANDDG-V 181 (846)
T ss_pred --ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc--EEEEecCCC-c
Confidence 23467999999993 367899999888 7776532 122222456778999999995 44 566666555 9
Q ss_pred EEEECCCCceEEEecCcccC------eEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 212 KVWDYQTKSCVQTLEGHTHN------VSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 212 ~v~d~~~~~~~~~~~~~~~~------v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
++||..+++.+..++..... ...+.|.++. .|+.|-.| +|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 99999988887777644333 3457788775 45555444 78888877
No 336
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1e-05 Score=81.43 Aligned_cols=207 Identities=16% Similarity=0.088 Sum_probs=144.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT---MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKG 131 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~ 131 (871)
|...|+.+. ....+++.+++-||.++.|.-.. -+.+..+..|...|.+++.+-++-.+.+++. |..++++|+++-
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 555555543 33567899999999999997442 1344556789999999999999988888777 999999999865
Q ss_pred ceEEEEeecCCcceEEEEEecCCC----CEEEEEECCCcEEEEECCCCC--CeEEEecCCCCeeEEEEeecCCcCEEEEE
Q 002881 132 WMCTQIFEGHSHYVMQVTFNPKDT----NTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
....-.-.. .....+.|....+ .+-++.-.+|.+.++|-.... ....-.-|..+|.++.+++.++ .+++.
T Consensus 87 DminmiKL~--~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--s~vSi 162 (558)
T KOG0882|consen 87 DMINMIKLV--DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--SAVSI 162 (558)
T ss_pred chhhhcccc--cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--ceeec
Confidence 222111111 1112233432122 233334457899999986654 2333456889999999999998 58888
Q ss_pred eCCCeEEEEECCC------CceE---------EEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 002881 206 SDDHTAKVWDYQT------KSCV---------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 206 ~~dg~i~v~d~~~------~~~~---------~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 267 (871)
...|.|.-|.... .... ..+.......+++.|+|++..+.+-+.|..|++++.++|+.++.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 8899999998762 1111 112223456789999999999999999999999999998866544
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.27 E-value=0.00072 Score=75.32 Aligned_cols=234 Identities=14% Similarity=0.100 Sum_probs=143.7
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeecCCC-----EE-EEEEeCCCCEEEEEe---------CCCeEEEEECCCCcEE
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELP-----VR-SAKFVARKQWVVAGA---------DDMFIRVYNYNTMDKV 92 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~ 92 (871)
..+++++.+|.|.-+|.++|+.+-.+...... +. ...+ .+..+++++ .+|.+.-+|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56778888999999999999988776543221 11 1111 124555554 3678999999999988
Q ss_pred EEEccCCCC--------------------e-EEEEEcCCCCEEEEEECCC------------------eEEEEECCCCce
Q 002881 93 KVFEAHTDY--------------------I-RCVAVHPTLPYVLSSSDDM------------------LIKLWDWEKGWM 133 (871)
Q Consensus 93 ~~~~~~~~~--------------------i-~~i~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~ 133 (871)
..+...... + ...++.+.+..+++++.++ .|.-.|.+++..
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 776532110 1 1234444566788887665 688899998844
Q ss_pred EEEEe-ecCCcc---e-EEEEEe---cCCC---CEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEE
Q 002881 134 CTQIF-EGHSHY---V-MQVTFN---PKDT---NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (871)
Q Consensus 134 ~~~~~-~~~~~~---v-~~~~~~---p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 202 (871)
.-+.- ..|... . ...... +.++ ..+++++.+|.+...|..+++.+........ .+...| + .+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~---~~~~~~--~--~v 341 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ---PMAYDP--G--LV 341 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc---ccccCC--c--eE
Confidence 33321 111100 0 000111 0122 2678888899999999999998876542211 122222 1 23
Q ss_pred EEE------------------eCCCeEEEEECCCCceEEEecCcc--------cCeEEEEEcCCCCEEEEEECCCcEEEE
Q 002881 203 ITG------------------SDDHTAKVWDYQTKSCVQTLEGHT--------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (871)
Q Consensus 203 ~~~------------------~~dg~i~v~d~~~~~~~~~~~~~~--------~~v~~i~~~p~~~~l~~~~~dg~v~iw 256 (871)
..+ ..+|.+.-.|..+|+.+....... .+...-...-.+..|++++.||.|+.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 322 246789999999999887765331 111110111244688888999999999
Q ss_pred eCCCCeEEEEEecC
Q 002881 257 HATTYRLENTLNYG 270 (871)
Q Consensus 257 d~~~~~~~~~~~~~ 270 (871)
|..+|+.+...+..
T Consensus 422 d~~tG~~lW~~~~~ 435 (488)
T cd00216 422 DATTGKELWKFRTP 435 (488)
T ss_pred ECCCCceeeEEECC
Confidence 99999999888765
No 338
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.19 E-value=0.0055 Score=63.14 Aligned_cols=266 Identities=11% Similarity=0.109 Sum_probs=132.5
Q ss_pred EEcCCCCEEEEEEc---CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccC
Q 002881 22 DLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (871)
Q Consensus 22 ~~s~~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 98 (871)
+|.+||+.|+.++. ...+.+.|+.+++..+.-.+.........++|+++.++-......|+-.|+.+++....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 57889987777665 446888899998776644432222334667899888877666678999999998877777766
Q ss_pred CCCeEEEEEc--CCCCEEEEEE---C-------------------CCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002881 99 TDYIRCVAVH--PTLPYVLSSS---D-------------------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (871)
Q Consensus 99 ~~~i~~i~~~--~~~~~l~~~~---~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (871)
.+.+-...|. .++..++-.- . ...|.--|+.++ ....++. ....+..+.|+|.+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-ERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEE-ESS-EEEEEEETTE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-ceeEEEe-cCccccCcccCCCC
Confidence 7766666774 3455544221 1 124555677776 4333333 44567889999988
Q ss_pred CCEEEEEECC---C-cEEEEECCCC-CCeEEEecCC--CCeeEEEEeecCCcCEEEEEeC---CCeEEEEECCCCceEEE
Q 002881 155 TNTFASASLD---R-TIKIWNLGSP-DPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQT 224 (871)
Q Consensus 155 ~~~l~~~~~d---g-~i~i~d~~~~-~~~~~~~~~~--~~i~~i~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~ 224 (871)
+..+.-|-+. . .-+||-++.. .....+..+. ..+..=-|.|+|.......... +..|.-+|+.+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 8888877652 2 1255655432 2222222222 2233344788887522222222 33577778888765433
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEECCC----------------cEEEEeCCCCeEEEEEec---------CC-ccEEEEE
Q 002881 225 LEGHTHNVSAVCFHPELPIIITGSEDG----------------TVRIWHATTYRLENTLNY---------GL-ERVWAIG 278 (871)
Q Consensus 225 ~~~~~~~v~~i~~~p~~~~l~~~~~dg----------------~v~iwd~~~~~~~~~~~~---------~~-~~i~~i~ 278 (871)
.. .....-+..+++|++++-=+.|. -|++++...++....... +. ..=....
T Consensus 280 ~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 280 ME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp EE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred Ee--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 22 12345566788998877545442 355667766553321110 00 0123467
Q ss_pred EeeCCCeEEEEEc
Q 002881 279 YMKSSRRIVIGYD 291 (871)
Q Consensus 279 ~~~~~~~l~~g~~ 291 (871)
|+||++.|+..++
T Consensus 358 FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 358 FSPDGKWVLFRSD 370 (386)
T ss_dssp E-TTSSEEEEEE-
T ss_pred cCCCCCEEEEECC
Confidence 8888887776543
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=0.00032 Score=74.38 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=81.7
Q ss_pred CCCEEEEEEeCC-CCEEEEE----eCCCe----EEEEECCCCcEEE--EE-ccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 002881 57 ELPVRSAKFVAR-KQWVVAG----ADDMF----IRVYNYNTMDKVK--VF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (871)
Q Consensus 57 ~~~v~~~~~~~~-~~~l~~~----~~dg~----i~iw~~~~~~~~~--~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 124 (871)
+....++.||.. ...+.+. +.+|. -++|++...+... .. -.....+.|++++|+...++.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 334567788763 3444443 23442 3456665443221 11 14677899999999999999999999999
Q ss_pred EEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
+||...+ ... .....-.++.++|+| ++.++++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~-~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRG-VTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCC-eee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 9998876 222 223445678999999 8999999999999999998543
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.17 E-value=0.0012 Score=64.81 Aligned_cols=201 Identities=8% Similarity=0.117 Sum_probs=119.4
Q ss_pred hhcccCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCceeEEeeec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 9 RKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
+.+.+-.+.+..++|+|+.. ++++....+.|..++. +|+.++.+... .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34556666799999999866 4455556788888885 57888877654 356888999888876666556899999988
Q ss_pred CCCc------EEEEEc-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CceEE-EEe------ecCCcce
Q 002881 87 NTMD------KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCT-QIF------EGHSHYV 145 (871)
Q Consensus 87 ~~~~------~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~-~~~------~~~~~~v 145 (871)
.... ....+. .++..+-.++|+|.++.|+++-+..-..+|.+.. ..... ... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 4221 112221 3556799999999988888887776667776654 11111 111 1123457
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCC---------CCeeEEEEeecCCcCEEEEEeCCCeEEEE
Q 002881 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ---------KGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (871)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~~~l~~~~~dg~i~v~ 214 (871)
.+++++|..+++++.+..+..|..+| .+++++..+.-.. ...-.+++.++|+ |.+.++-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~---LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN---LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-----EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC---EEEEcCCceEEEe
Confidence 89999998888888888999999999 4666655543222 2456788888775 6666666665554
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=4.6e-07 Score=94.97 Aligned_cols=200 Identities=19% Similarity=0.250 Sum_probs=136.1
Q ss_pred CCCCEEEEEEcCC--CCEEEEEEcCCeEEEEeCCCCce--eEEeeecCCCEEEEEEeC-CCCEEEEEeC----CCeEEEE
Q 002881 14 RSERVKSVDLHPS--EPWILASLYSGTVCIWNYQSQTM--AKSFEVTELPVRSAKFVA-RKQWVVAGAD----DMFIRVY 84 (871)
Q Consensus 14 h~~~v~~i~~s~~--~~~la~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----dg~i~iw 84 (871)
....+.|++++-+ ...+++|..+|.|.+-......- .....++..++++++|++ |.++||.|-+ |..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456888887654 45788999999999988765322 233445778999999998 5677887743 6789999
Q ss_pred ECCCC--cEE--EEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 85 NYNTM--DKV--KVFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 85 ~~~~~--~~~--~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
|+.++ .+. ..|.+ ......+++|-.+.+.+++|.....+.++|++....... .-.+..+..+...|-..++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh--hhhhhhcccceecCCCCCcee
Confidence 99876 221 11222 334566899998889999999999999999985422222 223345666777775667887
Q ss_pred EEECCCcEEEEE-CCCCC-CeEEEec----CCCCeeEEEEeecCCcCEEEEE-eCCCeEEEEECC
Q 002881 160 SASLDRTIKIWN-LGSPD-PNFTLDA----HQKGVNCVDYFTGGDKPYLITG-SDDHTAKVWDYQ 217 (871)
Q Consensus 160 ~~~~dg~i~i~d-~~~~~-~~~~~~~----~~~~i~~i~~~~~~~~~~l~~~-~~dg~i~v~d~~ 217 (871)
+-. ||.|.+|| .++-+ +...+.. ....+..++|+|...+ .+++. -..++|+.+++.
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc-hhhhhccCcceEEEeccc
Confidence 766 99999999 33322 2222221 2235889999998876 44444 455788888875
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.15 E-value=0.00096 Score=70.85 Aligned_cols=262 Identities=10% Similarity=0.084 Sum_probs=132.9
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------- 88 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------- 88 (871)
.|+.+.|.++..-|++|..+|.|.||.+...+.-. .....+-....+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998889999999999999876543221 000111111111110 00011111222211
Q ss_pred -CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEE-eec------CCcceEEEEEec----CCC-
Q 002881 89 -MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI-FEG------HSHYVMQVTFNP----KDT- 155 (871)
Q Consensus 89 -~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~------~~~~v~~~~~~p----~~~- 155 (871)
..+...+....++|++++.|.-| ++++|..+|.+.|.|++....+... +.. ....++++.|.. .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12333445568899999998555 9999999999999999887333331 111 234688888863 122
Q ss_pred --CEEEEEECCCcEEEEECCC---CCCe----EEEecCCCCeeEEEEee-cC------------------CcCEEEEEeC
Q 002881 156 --NTFASASLDRTIKIWNLGS---PDPN----FTLDAHQKGVNCVDYFT-GG------------------DKPYLITGSD 207 (871)
Q Consensus 156 --~~l~~~~~dg~i~i~d~~~---~~~~----~~~~~~~~~i~~i~~~~-~~------------------~~~~l~~~~~ 207 (871)
-.+++|+..|.+.+|.+.- +... .....+..++..+.... +. .-+-+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688899999999998741 1111 11123455555554321 11 0012455555
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEc-----CCCCEEEEEECCCcEEEEeCCCCeEEEEEecCC----ccEEEEE
Q 002881 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----PELPIIITGSEDGTVRIWHATTYRLENTLNYGL----ERVWAIG 278 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~-----p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~i~~i~ 278 (871)
+..++++...+.+.........-....+++- ..+..|++-..+|.++++.+-.-+.+..+.... ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7789999998777655544222223334442 356678888899999999999888877766542 1223344
Q ss_pred EeeCCCeEE
Q 002881 279 YMKSSRRIV 287 (871)
Q Consensus 279 ~~~~~~~l~ 287 (871)
++++|..+.
T Consensus 314 is~~Gdi~~ 322 (395)
T PF08596_consen 314 ISRNGDIFY 322 (395)
T ss_dssp E-TTS-EEE
T ss_pred ECCCCCEEE
Confidence 455554433
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00017 Score=77.39 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=114.0
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEc---C-CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC-CC--eEE
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLY---S-GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DM--FIR 82 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~---d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~ 82 (871)
.+......+..-+|+|++..++.... . ..+.++++.++....... ..+.-..-+|+|||++|+.+.. || .|.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 34445567888899999997765432 2 469999999987666554 3344456789999999886654 55 566
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
++|+.++.. ..+....+.-+.-.|+|+|+.|+..++. | .|.+++.+.+.....+...... ..-.|+| ++..++
T Consensus 266 ~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~Sp-dG~~i~ 341 (425)
T COG0823 266 LMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSP-DGDKIV 341 (425)
T ss_pred EEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCC-CCCEEE
Confidence 667776653 3344333334467899999998876653 3 5777787776332223222222 2678999 677766
Q ss_pred EEEC-CCc--EEEEECCCCCCeEEEecCCCCeeEEEEeecCC
Q 002881 160 SASL-DRT--IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD 198 (871)
Q Consensus 160 ~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 198 (871)
..+. +|. |.+.|+.++.....+. .......-.|.+++.
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~ 382 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGR 382 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence 6654 344 6666766555433332 233333455666665
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=0.0012 Score=72.12 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=133.2
Q ss_pred CCCEEEEEEc-CCeEEEEeCCCCceeEEeeec-CCCEEEEE-------------------EeCCCCEEEEEe-CCCeEEE
Q 002881 26 SEPWILASLY-SGTVCIWNYQSQTMAKSFEVT-ELPVRSAK-------------------FVARKQWVVAGA-DDMFIRV 83 (871)
Q Consensus 26 ~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~-------------------~~~~~~~l~~~~-~dg~i~i 83 (871)
||+||.+-.. ++.|-.-+++..+..+.++.. ...+..+. ++|||+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6788888765 666777777665554444321 11222222 344555443222 2467778
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC---C-eEEEEECCCCceEEEEeecCCcceEEEEEec-------
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD---M-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP------- 152 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p------- 152 (871)
.|.++.+...++.-.. ....++++|+|+++++.+.+ | ++..-+... .. ..+.|++
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-----------~d--~~vvfni~~iea~v 285 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-----------RD--WVVVFNIARIEEAV 285 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc-----------Cc--eEEEEchHHHHHhh
Confidence 8888777766655322 44678999999999887632 1 222222111 11 2233332
Q ss_pred CCCCEEEEEECCCcEEEEECCC----CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-------
Q 002881 153 KDTNTFASASLDRTIKIWNLGS----PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------- 221 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------- 221 (871)
.++++... .++.|.+.|..+ +..+...-.-......+.++|+++. +++++..+..|.|+|+.+.+.
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGky-lyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKY-FIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCE-EEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 14555554 357899999987 3333333334556688999999984 555666789999999987542
Q ss_pred -----EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002881 222 -----VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 222 -----~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
...... .......+|.++|....+..-|..|..||+.+
T Consensus 363 ~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 223332 22334678999999888888999999999875
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.08 E-value=9.2e-05 Score=78.36 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=82.8
Q ss_pred EEEEEEcCCCC-EEEEE----EcCCe----EEEEeCCCCceeE--Eee-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 18 VKSVDLHPSEP-WILAS----LYSGT----VCIWNYQSQTMAK--SFE-VTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 18 v~~i~~s~~~~-~la~~----~~dg~----v~iwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
..++.||-..+ .+.+. +.+|. -.+|++..++..+ ... .....|.|++++|+.++++.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46667776333 34432 22343 4467765543322 111 3577899999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEE
Q 002881 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (871)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (871)
...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-+....+.
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 8765333 2234556789999999999999999999999998765333333
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.06 E-value=0.0055 Score=66.20 Aligned_cols=210 Identities=10% Similarity=-0.024 Sum_probs=117.5
Q ss_pred EEEEcCCCCEEEEEEcC-----------CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002881 20 SVDLHPSEPWILASLYS-----------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
.++.+|.|..+|....+ ..|.||+ ..|+.+.++.-..+.+.++.|+.+. .|++-..||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-
Confidence 45667777767776543 1599999 5677777776656899999998854 56677799999999986
Q ss_pred CcEEEEE-------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCc---------ceEE-EEEe
Q 002881 89 MDKVKVF-------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH---------YVMQ-VTFN 151 (871)
Q Consensus 89 ~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v~~-~~~~ 151 (871)
|+....+ .-....+....+..+| ++.-+.++.+.+.+--......+.+..-.. .... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 3331111 1111222223344455 333344555544432221111111100000 0000 1233
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc-cc
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-TH 230 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~ 230 (871)
. +....+....++.+.+.+-...+. + ...+++..++.||+++ +++.-..+|.+.+.+..-.+....+... ..
T Consensus 188 ~-~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 188 S-DRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred c-CcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCC--EEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 2 333444444455555444322211 1 1246899999999988 7888888999999987666665555433 34
Q ss_pred CeEEEEEcCCC
Q 002881 231 NVSAVCFHPEL 241 (871)
Q Consensus 231 ~v~~i~~~p~~ 241 (871)
....+.|..+.
T Consensus 261 ~p~~~~WCG~d 271 (410)
T PF04841_consen 261 PPKQMAWCGND 271 (410)
T ss_pred CCcEEEEECCC
Confidence 55677777654
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00041 Score=74.38 Aligned_cols=203 Identities=13% Similarity=0.107 Sum_probs=122.1
Q ss_pred eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe---CC-CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCE
Q 002881 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA---DD-MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 113 (871)
.+.+=|.+ +...+.+......+..-+|+|++..++..+ .. ..+.++++++++...... ..+.-...+|+|+|+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34454543 555555555566788889999999877553 23 469999999887655544 1222345689999998
Q ss_pred EEEEE-CCCe--EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc--EEEEECCCCCCeEEEecCCCCe
Q 002881 114 VLSSS-DDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT--IKIWNLGSPDPNFTLDAHQKGV 188 (871)
Q Consensus 114 l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i 188 (871)
|+.++ .||. |.+.|+.++. ..+ +....+.-..-.|+|++..++++.+..|. |.+++.+.... ..+....+.-
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~-~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~ 328 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN-LPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN 328 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc-cee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence 87654 4554 6666777663 333 33333333467799955555555555554 56666666554 3333333333
Q ss_pred eEEEEeecCCcCEEEEEe-CCCe--EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE
Q 002881 189 NCVDYFTGGDKPYLITGS-DDHT--AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 189 ~~i~~~~~~~~~~l~~~~-~dg~--i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
..-.|+|+|+. ++..+ .+|. |.+.|+.++..++.+. .......-+|.|++..+...+
T Consensus 329 ~~p~~SpdG~~--i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 329 SNPVWSPDGDK--IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cCccCCCCCCE--EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 37789999984 44443 3454 6667776655444333 233344567888887666544
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.05 E-value=0.0065 Score=65.62 Aligned_cols=192 Identities=8% Similarity=-0.003 Sum_probs=104.9
Q ss_pred eEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee--cCCcceE-----EEEEec
Q 002881 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--GHSHYVM-----QVTFNP 152 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~-----~~~~~p 152 (871)
.|.||+. .|+.+..+.-..+.|.++.|+.+. .|++...||.+++||+... . ...+. .....|. ...+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~-~-~fsl~~~i~~~~v~e~~i~~~~~~- 136 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE-F-QFSLGEEIEEEKVLECRIFAIWFY- 136 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc-e-eechhhhccccCcccccccccccC-
Confidence 4888885 466666665444889999999864 6777789999999999754 2 11111 0111222 22222
Q ss_pred CCCCEEEEEECCCcEEEEECCCCC-CeEEEecCCCCee---------E-EEEeecCCcCEEEEEeCCCeEEEEECCCCce
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKGVN---------C-VDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~---------~-i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 221 (871)
+.. ++.-+.++.+.+..-.... ....+........ . ..++.+. ...+....++.+.+.+-.....
T Consensus 137 -~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~--~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 137 -KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR--VVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred -CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc--ceEEEEecCCEEEEEEcccccc
Confidence 122 3333445555444322211 1111111011000 0 1122121 1334444445555444222111
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC-CccEEEEEEeeCCC
Q 002881 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSR 284 (871)
Q Consensus 222 ~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~ 284 (871)
+. ..+++..++.||+++++|.-..+|.+.+.+..-.+....+... ......+.|+-+..
T Consensus 213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 21 2468999999999999999999999999986655555555544 34667888887643
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.0028 Score=67.43 Aligned_cols=229 Identities=10% Similarity=0.144 Sum_probs=118.7
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--------C
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--------K 130 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~--------~ 130 (871)
.|+.+.|.++..-|++|...|.|.||.+...+... .....+-..+.+.+-+ ..++.-.+-|+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876533322 0000111111111100 011111222322 1
Q ss_pred CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec--------CCCCeeEEEEee---cCC-
Q 002881 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--------HQKGVNCVDYFT---GGD- 198 (871)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~i~~~~---~~~- 198 (871)
+......+....++|++++.+ +-.++++|+.+|.+.|.|+++...+..-.. ....++++.|.. .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 223444555567899999997 578999999999999999998876655321 234577888763 222
Q ss_pred --cCEEEEEeCCCeEEEEECC--C-Cce----EEEecCcccCeEEEE-EcCC-----------------C----CEEEEE
Q 002881 199 --KPYLITGSDDHTAKVWDYQ--T-KSC----VQTLEGHTHNVSAVC-FHPE-----------------L----PIIITG 247 (871)
Q Consensus 199 --~~~l~~~~~dg~i~v~d~~--~-~~~----~~~~~~~~~~v~~i~-~~p~-----------------~----~~l~~~ 247 (871)
...+++|+..|.+.+|.+. . +.. ......+.++|..+. ++.+ + .+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 2579999999999999774 1 211 111123455555554 3211 0 144444
Q ss_pred ECCCcEEEEeCCCCeEEEEEecCCccEEEEEE-----eeCCCeEEEEEcCCeEEEe
Q 002881 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGY-----MKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~-----~~~~~~l~~g~~dg~i~i~ 298 (871)
+ +..++++...+.+..+......-....+++ ...+..|++-..+|.++++
T Consensus 233 S-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp --SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred c-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 4 568999998877765544422122333444 2345666667777777663
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.03 E-value=0.0013 Score=70.03 Aligned_cols=231 Identities=10% Similarity=0.081 Sum_probs=131.3
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEe-eec----------------CCCEEEEEEeCCCCEEEEEeC
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-EVT----------------ELPVRSAKFVARKQWVVAGAD 77 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~-~~~----------------~~~v~~~~~~~~~~~l~~~~~ 77 (871)
...+....|||+|+++|... ++.|.+++..++...+.- .+. -+.-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45788999999999999886 789999998777443311 110 112367889999999987532
Q ss_pred C-C-----------------------------------eEEEEECCCCcEEE--EE---ccCCCCeEEEEEcCCCCEEEE
Q 002881 78 D-M-----------------------------------FIRVYNYNTMDKVK--VF---EAHTDYIRCVAVHPTLPYVLS 116 (871)
Q Consensus 78 d-g-----------------------------------~i~iw~~~~~~~~~--~~---~~~~~~i~~i~~~~~~~~l~~ 116 (871)
| . .+.|+++.+++... .. ..-...+..+.|.+++..|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 1 1 23445555544321 11 123446788999999884443
Q ss_pred E--ECC---CeEEEEECCCCceEEEEeecCCcce---EEEEEe-cCCCCEEEEEECCCcEE--EEECCCCCCeEEEecCC
Q 002881 117 S--SDD---MLIKLWDWEKGWMCTQIFEGHSHYV---MQVTFN-PKDTNTFASASLDRTIK--IWNLGSPDPNFTLDAHQ 185 (871)
Q Consensus 117 ~--~~d---g~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~~-p~~~~~l~~~~~dg~i~--i~d~~~~~~~~~~~~~~ 185 (871)
. ..+ ..+.+.|..++.............| ....|. +++..++.....+|.-. +++..++. ...+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 3 222 3467778776633222222222222 244454 65666777777777544 45554443 33445455
Q ss_pred CCeeE-EEEeecCCcCEEEEEeC----CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE
Q 002881 186 KGVNC-VDYFTGGDKPYLITGSD----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 186 ~~i~~-i~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
-.|.. +.|.+.++. +++++.. ...|...++..+..+..+......-..+.|||++++++...
T Consensus 280 ~~V~~i~~~d~~~~~-iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 280 WEVTSILGWDEDNNR-IYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-EEEEEEEECTSSE-EEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eeecccceEcCCCCE-EEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 56644 556666553 5556654 23666667763344455554333336899999999777544
No 351
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.00 E-value=0.018 Score=63.25 Aligned_cols=243 Identities=15% Similarity=0.108 Sum_probs=137.5
Q ss_pred CEEEEEEcCCCCEEEEEEc-CC----eEEEEeCCCCceeEEe-eecCCCEEEEEEeCCCCEEEEEeCC-----------C
Q 002881 17 RVKSVDLHPSEPWILASLY-SG----TVCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVAGADD-----------M 79 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~-dg----~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-----------g 79 (871)
.+..+.+||+|+++|.+.. .| .++++|+++|+.+... .... -..+.|.++++.|+....+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3446889999999997643 44 4999999999776532 2221 2239999998887766432 2
Q ss_pred eEEEEECCCCcE--EEEEccCCCC--eEEEEEcCCCCEEEEEECC----CeEEEEECCCC----ceEEEEeecCCcceEE
Q 002881 80 FIRVYNYNTMDK--VKVFEAHTDY--IRCVAVHPTLPYVLSSSDD----MLIKLWDWEKG----WMCTQIFEGHSHYVMQ 147 (871)
Q Consensus 80 ~i~iw~~~~~~~--~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~~~~~~v~~ 147 (871)
.|..|.+.+... ...+...... ...+..++++++|++.+.. ..+.+.+...+ .....+.....+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 478888877643 2455443332 6788999999998865432 35788888763 2333333333333334
Q ss_pred EEEecCCCCEEEEEEC---CCcEEEEECCCCCC---eEEEecCCCCeeEEEEeecCCcCEEEEEeCCC--eEEEEECCCC
Q 002881 148 VTFNPKDTNTFASASL---DRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTK 219 (871)
Q Consensus 148 ~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg--~i~v~d~~~~ 219 (871)
+... ++.+++.... ++.|...++..... ...+..+...+.-..+...++. +++....++ .|+++++..+
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT-T
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECCCC
Confidence 4443 3444444332 46777788877663 2244445544333444444542 444544444 5888998834
Q ss_pred ceEEEecC-cccCeEEEEEcCCCCEEEE--EE--CCCcEEEEeCCCCeEE
Q 002881 220 SCVQTLEG-HTHNVSAVCFHPELPIIIT--GS--EDGTVRIWHATTYRLE 264 (871)
Q Consensus 220 ~~~~~~~~-~~~~v~~i~~~p~~~~l~~--~~--~dg~v~iwd~~~~~~~ 264 (871)
.....+.. ..+.|..+...++++.+.. .| .-+++.-||+.+++..
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44444433 3344666666666654332 22 2356888888887753
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.97 E-value=0.0083 Score=59.04 Aligned_cols=199 Identities=12% Similarity=0.104 Sum_probs=113.4
Q ss_pred eeecCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCcEEEEEccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002881 53 FEVTELPVRSAKFVARKQWV-VAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (871)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~ 130 (871)
+.+-...+..++|+|+.+.| ++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.+.++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 33444569999999986654 55566788888886 47887776532 35688899988886666655689999998843
Q ss_pred Cc--eEE---EEe-----ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC---CCCeEEE--------ecCCCCee
Q 002881 131 GW--MCT---QIF-----EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTL--------DAHQKGVN 189 (871)
Q Consensus 131 ~~--~~~---~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--------~~~~~~i~ 189 (871)
.. ... ..+ ..++..+-.++|+| .++.|+++-...-..+|.++. ....... ......+.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 21 101 111 12445689999999 566666777776777777654 2111111 11234567
Q ss_pred EEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc---------cCeEEEEEcCCCCEEEEEECCCcEEEE
Q 002881 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT---------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (871)
Q Consensus 190 ~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~i~~~p~~~~l~~~~~dg~v~iw 256 (871)
.+.++|.... +++.+..+..|..+| .+|+++..+.-.. ...-.|+|.++|++.+ .++-+..++|
T Consensus 175 ~l~~~p~t~~-lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGH-LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTE-EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCe-EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 8889887654 777888889999999 5577765553222 2467899999986544 4555555544
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.95 E-value=0.01 Score=60.99 Aligned_cols=227 Identities=12% Similarity=0.167 Sum_probs=133.1
Q ss_pred CCCCEEEEEEcCCeEEEEeCC-CCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------
Q 002881 25 PSEPWILASLYSGTVCIWNYQ-SQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-------- 95 (871)
Q Consensus 25 ~~~~~la~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------- 95 (871)
..++.|++|+.+| +.+++.. .....+.. +..+|..+...|+-+.+++-+ |+.+.++++.+.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999888 8999983 33333332 333499999999888877765 499999998765443311
Q ss_pred ------ccCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCc----eEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 96 ------EAHTDYIRCVA--VHPTLPYVLSSSDDMLIKLWDWEKGW----MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 96 ------~~~~~~i~~i~--~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
-.....+...+ -.+.+...++......|.+|.+.... ...+.+. ....+.+++|. ++.++.|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEEEEEeC
Confidence 11223344444 11233334444445589999887531 1222222 34678899998 467777765
Q ss_pred CCcEEEEECCCCCCeEEEecC------------CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE--EecCcc
Q 002881 164 DRTIKIWNLGSPDPNFTLDAH------------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--TLEGHT 229 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~ 229 (871)
+ ...+.|+.++.....+... ..++..+... ++. +|++ . +..-.+.|.. |++.+ .+.- .
T Consensus 157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e--~Ll~-~-~~~g~fv~~~-G~~~r~~~i~W-~ 228 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE--FLLC-Y-DNIGVFVNKN-GEPSRKSTIQW-S 228 (275)
T ss_pred C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce--EEEE-e-cceEEEEcCC-CCcCcccEEEc-C
Confidence 4 5778899876654333211 1223333332 222 4543 3 3333344543 44333 2332 2
Q ss_pred cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC
Q 002881 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (871)
..+.++.+.. ++|++.+. +.|.||++.++++++++..+
T Consensus 229 ~~p~~~~~~~--pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 SAPQSVAYSS--PYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CchhEEEEEC--CEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 3445566643 57777765 46999999999999888755
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.91 E-value=0.0024 Score=69.77 Aligned_cols=216 Identities=14% Similarity=0.079 Sum_probs=131.5
Q ss_pred EEcCCCCEEEEEE-cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCcEEEEEc
Q 002881 22 DLHPSEPWILASL-YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----MFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 22 ~~s~~~~~la~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~ 96 (871)
=++|||+.+...+ ..+.+.+.|.++.+...++.... ....+.++|+|+++++.+.+ +++...+..+...+..+.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3567777664432 36778888988887777776544 45778999999999888632 233333333222222221
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CceEEEEeecCCcceEEEEEecCCCCEE-EEEECCCcEEEEE
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK----GWMCTQIFEGHSHYVMQVTFNPKDTNTF-ASASLDRTIKIWN 171 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~i~d 171 (871)
... + -++.++|++..++ ++.|.+.|..+ +......+. -......+.++| +++++ +++..+.++.|.|
T Consensus 278 i~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVID 349 (635)
T PRK02888 278 IAR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVID 349 (635)
T ss_pred hHH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEE
Confidence 100 0 1334577776663 57899999987 334444333 334578899999 55555 4555689999999
Q ss_pred CCCCCC------------eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC----------CceEEEecCcc
Q 002881 172 LGSPDP------------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----------KSCVQTLEGHT 229 (871)
Q Consensus 172 ~~~~~~------------~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~----------~~~~~~~~~~~ 229 (871)
+.+.+. ........ .....+|.++|. ...+-.-|..|..||+.+ ...+..+..|.
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~--aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y 426 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN--AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY 426 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCC--EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence 987542 22222222 334567766654 688888899999999875 23344444443
Q ss_pred cCeEE-----EEEcCCCCEEEEEEC
Q 002881 230 HNVSA-----VCFHPELPIIITGSE 249 (871)
Q Consensus 230 ~~v~~-----i~~~p~~~~l~~~~~ 249 (871)
.+-.- =.-.|+|++|++...
T Consensus 427 ~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 427 QPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ccceeeecCCCcCCCCCCEEEEccc
Confidence 33221 123567777776643
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.87 E-value=0.0056 Score=64.43 Aligned_cols=212 Identities=15% Similarity=0.226 Sum_probs=123.1
Q ss_pred CeEEEEECCCCcEEEEEcc-CCCCeEEEE---EcCC----CCEEEEEEC----------CCeEEEEECCCC----ceEEE
Q 002881 79 MFIRVYNYNTMDKVKVFEA-HTDYIRCVA---VHPT----LPYVLSSSD----------DMLIKLWDWEKG----WMCTQ 136 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~~~-~~~~i~~i~---~~~~----~~~l~~~~~----------dg~i~iwd~~~~----~~~~~ 136 (871)
+.|++.|..+.+.+..+.- ....+.+++ +..+ .++|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688888888877766542 233444443 3332 467887764 289999999883 12222
Q ss_pred E-eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEE
Q 002881 137 I-FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (871)
Q Consensus 137 ~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d 215 (871)
. -....++|++++-- ++. ++++. ++.|.+|++...+..........++...+....++ ++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEEEEcccCEEEEE
Confidence 1 23356789988876 344 44444 48999999987773333333333333333333444 799999888888885
Q ss_pred CCC-CceEEEec--CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-------C--eEE--EEEecCCccEEEE---E
Q 002881 216 YQT-KSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT-------Y--RLE--NTLNYGLERVWAI---G 278 (871)
Q Consensus 216 ~~~-~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~-------~--~~~--~~~~~~~~~i~~i---~ 278 (871)
++. +..+..+. .....++++.+-++++.++++..+|.+.++.... + ++. ..+..+ ..|.++ +
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~ 234 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGS 234 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-CccceEEEEE
Confidence 543 22232222 2345588888987767999999999999987652 1 233 233333 456666 4
Q ss_pred EeeC--CC------eEEEEEcCCeEEE
Q 002881 279 YMKS--SR------RIVIGYDEGTIMV 297 (871)
Q Consensus 279 ~~~~--~~------~l~~g~~dg~i~i 297 (871)
..|. +. .++.++.+|.+..
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 4441 22 3777888888764
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0014 Score=70.70 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=101.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC
Q 002881 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 177 (871)
+...|.--+++..+++++.|+.-|.+++|+-.++........+..+.+..+..++ ...+++.|+..|.|.++-++...+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 3444555566777899999999999999998877554555545555666777787 788899999999999999876543
Q ss_pred eEEE------ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC----ceEEEecCcccCeEEEEEcC
Q 002881 178 NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 178 ~~~~------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~i~~~p 239 (871)
.... ..|+..|++++|++++. -+.+|...|+|..-.+.+. ...+.+-...+.|..+....
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred CcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 2211 23678899999999998 5999999999999888762 12233333456676666654
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.034 Score=59.77 Aligned_cols=262 Identities=17% Similarity=0.137 Sum_probs=165.7
Q ss_pred CEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEEE
Q 002881 17 RVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~ 94 (871)
....+...|++..+.+... ...+.+.+...................++.++.++.++.. ..++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 4566778888865555443 2245555544211111111111345677888888865554 4468999999887777666
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC-EEEEEECCCcEEEE
Q 002881 95 FEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASASLDRTIKIW 170 (871)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~i~ 170 (871)
...-. ....++++|+++.+.++.. ++.+.+.|-.+.........+ ..+ ..++++| +++ ..++-..++.|.+.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDP-DGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECC-CCCeEEEEecCCCeEEEE
Confidence 65322 5678999999988887766 688999998887454443333 233 8899999 565 44555578999999
Q ss_pred ECCCCCCeE-E---EecCCCCeeEEEEeecCCcCEEEEEeC-CCeEEEEECCCCceEEEecCccc-CeEEEEEcCCCCEE
Q 002881 171 NLGSPDPNF-T---LDAHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPII 244 (871)
Q Consensus 171 d~~~~~~~~-~---~~~~~~~i~~i~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l 244 (871)
|........ . ..........+.+.+++...++..... ++.+...|..++........-.. ....+..+|+|..+
T Consensus 188 ~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~ 267 (381)
T COG3391 188 DTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAA 267 (381)
T ss_pred eCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEE
Confidence 976654332 0 111223346788889888523222222 26899999888776654221111 45678999999988
Q ss_pred EEEEC-CCcEEEEeCCCCeEEEEEecCCc---cEEEEEEeeC
Q 002881 245 ITGSE-DGTVRIWHATTYRLENTLNYGLE---RVWAIGYMKS 282 (871)
Q Consensus 245 ~~~~~-dg~v~iwd~~~~~~~~~~~~~~~---~i~~i~~~~~ 282 (871)
.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 87744 47899999888777766554422 3445555443
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.80 E-value=0.053 Score=54.98 Aligned_cols=253 Identities=10% Similarity=0.082 Sum_probs=154.4
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCcEEEEEccCCC------
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMDKVKVFEAHTD------ 100 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~------ 100 (871)
+.+.|+|.++++.+-.+...- .-.+..+|+++.+++++. .-.|.+||..|......+.-..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 579999999998877666432 334677999999987542 34799999999887765542221
Q ss_pred -CeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC-CCC
Q 002881 101 -YIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPD 176 (871)
Q Consensus 101 -~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~ 176 (871)
....++++.+++++++... ...|.|-|+..+ +....+.. .+ |...-|.++.-|.+-+.||.+.-..+. .++
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCC
Confidence 2234678889998887643 467899999887 44443332 11 222234345678899999999999987 344
Q ss_pred CeEEEe----cCCCCe-eEEEEeecCCcCEEEEEeCCCeEEEEECCCCceE--EEecCc----------ccCeEEEEEcC
Q 002881 177 PNFTLD----AHQKGV-NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--QTLEGH----------THNVSAVCFHP 239 (871)
Q Consensus 177 ~~~~~~----~~~~~i-~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~----------~~~v~~i~~~p 239 (871)
...+.. ....++ ..-.+...+. .++--+.+|.|+-.|+...... ..+... .+.-.-+++++
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~--~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGG--RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTT--EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred EeEeeccccCCCCcccccccceECCCC--eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 432211 112222 2223333333 3555778899999888755432 111110 11223467777
Q ss_pred CCCEEEEEEC---CC-------cEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEE-EE-EcCCeEEEec
Q 002881 240 ELPIIITGSE---DG-------TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV-IG-YDEGTIMVKI 299 (871)
Q Consensus 240 ~~~~l~~~~~---dg-------~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~g-~~dg~i~i~~ 299 (871)
..+.|.+.-. +| .|.++|+.+++.+..+... ..+.+++.+.+.+-++ +. ..++.+.++.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6665554321 22 3888899999999888765 5688999999876444 33 3467787753
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.088 Score=56.58 Aligned_cols=252 Identities=17% Similarity=0.173 Sum_probs=160.0
Q ss_pred EEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEEE-ccCCCCeEEEEEcCCCCEEEE
Q 002881 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLS 116 (871)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~ 116 (871)
+.+++..+......+..+. ....+...+++..+..... ...+...+.. ....... .........++.++.++.++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666655555554444333 4556788888866655443 2245555544 2222222 211144567888998886555
Q ss_pred EE-CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC---CCcEEEEECCCCCCeEEEecCCCCeeEEE
Q 002881 117 SS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLGSPDPNFTLDAHQKGVNCVD 192 (871)
Q Consensus 117 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~ 192 (871)
.. .++.|.+.|..+.........+. ....++++| +++.+.++.. ++++.+.|..+.+..........+ ..++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 44 45899999987764444444443 567889999 5555555444 689999998888777765444444 7889
Q ss_pred EeecCCcCEEEEEeCCCeEEEEECCCCceEE-E---ecCcccCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEE
Q 002881 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-T---LEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYRLEN 265 (871)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~---~~~~~~~v~~i~~~p~~~~l~~~~~d---g~v~iwd~~~~~~~~ 265 (871)
+.|++.. .+++-..++.|.+.|..+..... . ..........+.++|+|..+.+.... +.+...|..++....
T Consensus 167 ~~p~g~~-vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNK-VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCe-EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 9999885 44444678999999977655442 1 01122334678999999966655433 589999988877665
Q ss_pred E-EecCCccEEEEEEeeCCCeEEEEEcC-CeEEE
Q 002881 266 T-LNYGLERVWAIGYMKSSRRIVIGYDE-GTIMV 297 (871)
Q Consensus 266 ~-~~~~~~~i~~i~~~~~~~~l~~g~~d-g~i~i 297 (871)
. ..........+..+|+|+.+.+.... +.+.+
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 5 22221145678899999988887544 55544
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.75 E-value=7.4e-06 Score=86.24 Aligned_cols=195 Identities=20% Similarity=0.318 Sum_probs=126.9
Q ss_pred CCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCceE-EEEeecCCcceEEEEEecCCCCEEEEEEC----CCcEEEEE
Q 002881 99 TDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSHYVMQVTFNPKDTNTFASASL----DRTIKIWN 171 (871)
Q Consensus 99 ~~~i~~i~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d 171 (871)
...+.|++++-+. ..+++|..+|.|.+-..+...-. .....++..+.++++|++-+.+.|+.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457777776543 47889999999999988765332 44556788889999999987888888743 56799999
Q ss_pred CCCC--CCeE--EEec-CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC-CCCEEE
Q 002881 172 LGSP--DPNF--TLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIII 245 (871)
Q Consensus 172 ~~~~--~~~~--~~~~-~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~ 245 (871)
+.+. .|.. .+.+ .....++++|-.+. +++++|...+.+.++|++. .+.......+..+..+...| .+++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~--klvlaGm~sr~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT--KLVLAGMTSRSVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCc--chhhcccccchhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCcee
Confidence 9876 2221 1222 33455678887443 3899999999999999982 22222222334566778888 667777
Q ss_pred EEECCCcEEEEeC-CCCe-EEEEEec----CCccEEEEEEeeCCCe-EEE-EEcCCeEEE
Q 002881 246 TGSEDGTVRIWHA-TTYR-LENTLNY----GLERVWAIGYMKSSRR-IVI-GYDEGTIMV 297 (871)
Q Consensus 246 ~~~~dg~v~iwd~-~~~~-~~~~~~~----~~~~i~~i~~~~~~~~-l~~-g~~dg~i~i 297 (871)
+.. ||.|.+||. .+-+ ++..+.. ...++..++|+|..+- +++ .-+.++|+.
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 766 899999993 2222 1211111 1235889999996432 333 333444444
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00018 Score=76.20 Aligned_cols=95 Identities=9% Similarity=0.128 Sum_probs=78.6
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (871)
...+.-+.|+|.-..||++..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|.+++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999988 788888887777777 99999999999999999999999999885544
Q ss_pred EEeecCCcceEEEEEec
Q 002881 136 QIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 136 ~~~~~~~~~v~~~~~~p 152 (871)
.........|.++.|.|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 43333344566666654
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00019 Score=76.17 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=78.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR-SAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 92 (871)
-...|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++..|+.+++ +++|.|||+.||+|-.||+|++.|.+++..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34568999999999999999999999999987 677778887777777 9999999999999999999999999998877
Q ss_pred EEEc-cCCCCeEEEEEc
Q 002881 93 KVFE-AHTDYIRCVAVH 108 (871)
Q Consensus 93 ~~~~-~~~~~i~~i~~~ 108 (871)
..+. .-...|.++-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 6632 234557777776
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.68 E-value=0.13 Score=57.69 Aligned_cols=195 Identities=11% Similarity=0.046 Sum_probs=114.8
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecC-CCEE---EEEEeC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVR---SAKFVA-----RKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~---~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 97 (871)
+..|++++.++.|.-.|..+|+.+-.+.... ..+. +..+.. .+..+++++.|+.|.-.|..+|+.+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4467777778899999999998887665321 1111 111111 235688888999999999999999877652
Q ss_pred CCCC-eEEEEEcC--CCCEEEEEEC------CCeEEEEECCCCceEEEEeecCC--------------------------
Q 002881 98 HTDY-IRCVAVHP--TLPYVLSSSD------DMLIKLWDWEKGWMCTQIFEGHS-------------------------- 142 (871)
Q Consensus 98 ~~~~-i~~i~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~-------------------------- 142 (871)
.... -..+.-+| .+..+++++. +|.|.-+|.+++...-+......
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 1100 00111112 1235555543 68899999988843322211100
Q ss_pred ----cce-EEEEEecCCCCEEEEEECC-----C-----------cEEEEECCCCCCeEEEecCCCC---------eeEEE
Q 002881 143 ----HYV-MQVTFNPKDTNTFASASLD-----R-----------TIKIWNLGSPDPNFTLDAHQKG---------VNCVD 192 (871)
Q Consensus 143 ----~~v-~~~~~~p~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~---------i~~i~ 192 (871)
..+ ..+++.| ..++++.+..+ + .|.-.|+++++....++..... ..-+.
T Consensus 229 ~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 229 KTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred ccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 011 1335666 45566665522 2 5667788888877666532221 12222
Q ss_pred EeecCC-cCEEEEEeCCCeEEEEECCCCceE
Q 002881 193 YFTGGD-KPYLITGSDDHTAKVWDYQTKSCV 222 (871)
Q Consensus 193 ~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~ 222 (871)
...++. .+.++.+..+|.+.+.|-.+|+.+
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 222333 247889999999999999999876
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.041 Score=57.89 Aligned_cols=212 Identities=15% Similarity=0.244 Sum_probs=127.0
Q ss_pred CeEEEEeCCCCceeEEeeecC-CCEEEEEEeC-------CCCEEEEEeC---------C-CeEEEEECCCC----cEEEE
Q 002881 37 GTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVA-------RKQWVVAGAD---------D-MFIRVYNYNTM----DKVKV 94 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~-------~~~~l~~~~~---------d-g~i~iw~~~~~----~~~~~ 94 (871)
+.|++.|..+.+.+.++.-.. ..+.+++... ...+|++|+. . |.|.++++.+. ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468899988888777666432 3455444322 2578888764 2 89999999874 22222
Q ss_pred E--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 95 F--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 95 ~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
+ ....++|++++-- + .+|+++. .+.|.+|++.... ............+.++... ++++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~-~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-N-GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE-T-TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-C-CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence 2 2457889988877 3 3455544 4789999999875 3333333344567777776 46999999989888885
Q ss_pred CCCC-CCeEEE--ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-------Cc--eEEEecC-cccCeEEE---
Q 002881 172 LGSP-DPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KS--CVQTLEG-HTHNVSAV--- 235 (871)
Q Consensus 172 ~~~~-~~~~~~--~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-------~~--~~~~~~~-~~~~v~~i--- 235 (871)
.+.. .....+ ......+.++.+.++++ .++++..+|.+.++.... +. ......- ....|+++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~--~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDED--TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSS--EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCc--EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 5432 222222 23345577888876664 799999999999998752 22 1111111 23456666
Q ss_pred EEcCC--C------CEEEEEECCCcEEEE
Q 002881 236 CFHPE--L------PIIITGSEDGTVRIW 256 (871)
Q Consensus 236 ~~~p~--~------~~l~~~~~dg~v~iw 256 (871)
++.|. + +.++.++.+|.|...
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 44441 2 247777778887743
No 365
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.57 E-value=0.25 Score=56.24 Aligned_cols=401 Identities=11% Similarity=0.103 Sum_probs=197.6
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ccCCCCeEEEEEcCCC------CEEEEEECCCeEEEEEC-C
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDW-E 129 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~i~~~~~~------~~l~~~~~dg~i~iwd~-~ 129 (871)
..++...-+.+...++.++.++.+....+..+...... ......|.|+.++|-| +++++|..+..+.+.-. .
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 34455555556667888877777777777655522221 1234579999999852 27888887765544432 2
Q ss_pred CCceEEEEeecC---CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeE----EEecCCCCeeEEEEeecCCcCEE
Q 002881 130 KGWMCTQIFEGH---SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF----TLDAHQKGVNCVDYFTGGDKPYL 202 (871)
Q Consensus 130 ~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~i~~~~~~~~~~l 202 (871)
..........+. +..|.-..+-. +..+|.++..||.+..|-+...+-.. +..-...|+.--.|+..+.. .+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t-~v 645 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRT-AV 645 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCce-EE
Confidence 221222221111 22344444543 57899999999999877664433221 11122345555555555443 34
Q ss_pred EEEeCCCeEEEEECCCCceEEE-ecCcccCeEEE-EEcCC--CCEEEEEECCCcEEEEeCCCCeE--EEEEecCCccEEE
Q 002881 203 ITGSDDHTAKVWDYQTKSCVQT-LEGHTHNVSAV-CFHPE--LPIIITGSEDGTVRIWHATTYRL--ENTLNYGLERVWA 276 (871)
Q Consensus 203 ~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~i-~~~p~--~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~i~~ 276 (871)
++. +|+-..+|..+ ++.+.+ +.- ..+..+ .|+.+ ...++.+. .+.+++..+..-+. .+++..+ .....
T Consensus 646 fa~-sdrP~viY~~n-~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prr 719 (1096)
T KOG1897|consen 646 FAL-SDRPTVIYSSN-GKLVYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRR 719 (1096)
T ss_pred EEe-CCCCEEEEecC-CcEEEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhh
Confidence 433 45555566544 333221 111 111111 12211 23455554 45777776654432 3344444 56778
Q ss_pred EEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCC
Q 002881 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (871)
Q Consensus 277 i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (871)
+++.+....+.+.+...-..... +.....+..+.+ +.......+...++..++...
T Consensus 720 I~~q~~sl~~~v~s~r~e~~~~~----------------~~ee~~~s~l~v--------lD~nTf~vl~~hef~~~E~~~ 775 (1096)
T KOG1897|consen 720 ICYQESSLTFGVLSNRIESSAEY----------------YGEEYEVSFLRV--------LDQNTFEVLSSHEFERNETAL 775 (1096)
T ss_pred eEecccceEEEEEecccccchhh----------------cCCcceEEEEEE--------ecCCceeEEeeccccccceee
Confidence 88888666666655544332210 011111111111 011111112222223332221
Q ss_pred --ceEEECCC-CCEEEEEc-----------CCcEEEEEeecccc---cC----cCceeEEEEecCCcEEEEecCCeEEEe
Q 002881 357 --QSLKHNPN-GRFVVVCG-----------DGEYIIYTALAWRN---RS----FGSALEFVWSSDGEYAVRESSSKIKIF 415 (871)
Q Consensus 357 --~~~~~s~~-g~~lav~~-----------~~~~~i~~~~~~~~---~~----~~~~~~~~~s~~~~~~~~~~~~~i~i~ 415 (871)
-+..+..| +.+++||+ .|++.+|....... .+ .|.+..+.- -+|++++ +-+..|++|
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA-~In~~vrLy 853 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA-GINQSVRLY 853 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE-ecCcEEEEE
Confidence 23346666 77888886 47888887665211 11 122222211 2455544 345678887
Q ss_pred ecccccceeeec-Ccccee----eecCcEEEEEeCC---eEEEEeccCCcEEEEEE----cceeEEEEcCCCCEEEEEeC
Q 002881 416 SKNFQEKRSVRP-TFSAER----IYGGTLLAMCSND---FICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASD 483 (871)
Q Consensus 416 ~~~~~~~~~~~~-~~s~~~----i~~~~~La~~~~~---~v~~~d~~~~~~~~~~~----~~i~~i~~s~~~~~la~~~~ 483 (871)
+...+..-.... ...|.. ...|..+++++-- ++..|+-..|..+...+ ...+.+.+-.+..++.+-..
T Consensus 854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred EccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccc
Confidence 654331111111 111111 1147888888754 77777777766554433 24555666666666655555
Q ss_pred CeEEEEEec
Q 002881 484 TSFYILKYN 492 (871)
Q Consensus 484 ~~~~~l~~~ 492 (871)
-+.+++..+
T Consensus 934 gNlf~v~~d 942 (1096)
T KOG1897|consen 934 GNLFTVRKD 942 (1096)
T ss_pred ccEEEEEec
Confidence 566666544
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.56 E-value=0.07 Score=59.76 Aligned_cols=237 Identities=12% Similarity=0.097 Sum_probs=136.3
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeecCC----CEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEcc
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~ 97 (871)
..+++++.++.+.-.|..+|+.+-....... .+++--..-++ .+++++. +|.|.-+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4577778899999999999998866543211 11111111133 4555543 68999999999998876542
Q ss_pred CCC-------------------------------Ce-EEEEEcCCCCEEEEEECC-----C-----------eEEEEECC
Q 002881 98 HTD-------------------------------YI-RCVAVHPTLPYVLSSSDD-----M-----------LIKLWDWE 129 (871)
Q Consensus 98 ~~~-------------------------------~i-~~i~~~~~~~~l~~~~~d-----g-----------~i~iwd~~ 129 (871)
-.. .+ ..+++.|...+++.++.+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 110 01 124566666666666522 2 56667888
Q ss_pred CCceEEEEeecCCcce---------EEEEEecCCCC---EEEEEECCCcEEEEECCCCCCeEE--------E----ecCC
Q 002881 130 KGWMCTQIFEGHSHYV---------MQVTFNPKDTN---TFASASLDRTIKIWNLGSPDPNFT--------L----DAHQ 185 (871)
Q Consensus 130 ~~~~~~~~~~~~~~~v---------~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~~~--------~----~~~~ 185 (871)
++ +..-.++...+.+ .-+.... ++. .++.++.+|.+.+.|-.+++++.. + ....
T Consensus 280 TG-~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 280 TG-KIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cC-CEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 87 3333333222211 1122212 343 788899999999999988876421 1 0000
Q ss_pred -CCe----------------------------eEEEEeecCCcCEEEEEeC-----------------------------
Q 002881 186 -KGV----------------------------NCVDYFTGGDKPYLITGSD----------------------------- 207 (871)
Q Consensus 186 -~~i----------------------------~~i~~~~~~~~~~l~~~~~----------------------------- 207 (871)
.++ ..++++|... ++++...
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g--~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~ 435 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTG--LFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPP 435 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCC--EEEEecccccccccccccccCCCCceeccccccCCC
Confidence 000 0133333222 2222111
Q ss_pred ----CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC
Q 002881 208 ----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 208 ----dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (871)
-|.|.-+|+.+++.....+.......+. ..-.+.+++.++.+|.++.+|.+||+.+......
T Consensus 436 ~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 436 PDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 2567888888888877665322212222 1124457778888999999999999999888765
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.46 E-value=0.1 Score=53.50 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=91.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE--------
Q 002881 110 TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-------- 181 (871)
Q Consensus 110 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------- 181 (871)
.++.|+.|+++| +.+++............ ...|..+...| .-+.+++-+ |+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 467899999998 89999843323333332 23499999998 556655554 599999999765433311
Q ss_pred ------ecCCCCeeEEE-EeecCCcCEEEEEeCCCeEEEEECCCC-----ceEEEecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 182 ------DAHQKGVNCVD-YFTGGDKPYLITGSDDHTAKVWDYQTK-----SCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 182 ------~~~~~~i~~i~-~~~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
......+...+ -...... ..++......|.+|..... .....+. ....+.+++|.+ +.++.|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--NKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--CEEEEEeC
Confidence 11223333333 1122222 3444444558888887653 3444544 346788999994 56777775
Q ss_pred CCcEEEEeCCCCeEEEEE
Q 002881 250 DGTVRIWHATTYRLENTL 267 (871)
Q Consensus 250 dg~v~iwd~~~~~~~~~~ 267 (871)
+ ...+.|+.++.....+
T Consensus 157 ~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELL 173 (275)
T ss_pred C-ceEEEecCCCCceEEe
Confidence 5 5888898877655444
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.45 E-value=0.18 Score=55.33 Aligned_cols=220 Identities=13% Similarity=0.082 Sum_probs=116.7
Q ss_pred EEEEEEeCCCCEEEEEe-CCC----eEEEEECCCCcEEEEE-ccCCCCeEEEEEcCCCCEEEEEECCC-----------e
Q 002881 60 VRSAKFVARKQWVVAGA-DDM----FIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDM-----------L 122 (871)
Q Consensus 60 v~~~~~~~~~~~l~~~~-~dg----~i~iw~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg-----------~ 122 (871)
+....++|+|++++.+- ..| .|+++|+.+++.+... .. . ....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34678899999998763 333 6999999999776532 22 1 123499999988776554332 3
Q ss_pred EEEEECCCCceE-EEEeecCCcc--eEEEEEecCCCCEEEEEEC-C---CcEEEEECCCC----CCeEEEecCCCCeeEE
Q 002881 123 IKLWDWEKGWMC-TQIFEGHSHY--VMQVTFNPKDTNTFASASL-D---RTIKIWNLGSP----DPNFTLDAHQKGVNCV 191 (871)
Q Consensus 123 i~iwd~~~~~~~-~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~-d---g~i~i~d~~~~----~~~~~~~~~~~~i~~i 191 (871)
|+.|.+.+.... ..++...... ...+..++ ++++++..+. . ..+.+.++..+ .....+......+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 788888776332 3445443333 56788888 6677665433 2 34777888764 2334444344444333
Q ss_pred EEeecCCcCEEEEE---eCCCeEEEEECCCCce---EEEecCcccC--eEEEEEcCCCCEEEEEECCC--cEEEEeCCCC
Q 002881 192 DYFTGGDKPYLITG---SDDHTAKVWDYQTKSC---VQTLEGHTHN--VSAVCFHPELPIIITGSEDG--TVRIWHATTY 261 (871)
Q Consensus 192 ~~~~~~~~~~l~~~---~~dg~i~v~d~~~~~~---~~~~~~~~~~--v~~i~~~p~~~~l~~~~~dg--~v~iwd~~~~ 261 (871)
.-+. ++. +++.. ...+.|.-.++.+... ...+..+... +..+....+ .+++....++ .|+++++..+
T Consensus 283 v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 283 VDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT-T
T ss_pred EEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECCCC
Confidence 2222 332 33333 2346777788876552 2244444443 444544332 2444444444 4888898834
Q ss_pred eEEEEEec-CCccEEEEEEeeCCCe
Q 002881 262 RLENTLNY-GLERVWAIGYMKSSRR 285 (871)
Q Consensus 262 ~~~~~~~~-~~~~i~~i~~~~~~~~ 285 (871)
.....+.. ..+.|..+...++++.
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SE
T ss_pred cEEeeecCCcceEEeccCCCCCCCE
Confidence 44444433 3333444444444443
No 369
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.43 E-value=0.079 Score=56.28 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=59.2
Q ss_pred EEEEcCCCCEEEEEEcCCeEEE---EeCC-CC----ceeEEeee---cC--CCEEEEEEeC-----------CCCEEEEE
Q 002881 20 SVDLHPSEPWILASLYSGTVCI---WNYQ-SQ----TMAKSFEV---TE--LPVRSAKFVA-----------RKQWVVAG 75 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~i---wd~~-~~----~~~~~~~~---~~--~~v~~~~~~~-----------~~~~l~~~ 75 (871)
.++.+|++..||.|..+..+.+ |+.. .+ .......+ ++ ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999987665555 5331 11 11222221 11 4677777754 35789999
Q ss_pred eCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcC
Q 002881 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109 (871)
Q Consensus 76 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~ 109 (871)
..+|.|++|.- +|..+..-.-|.++|..+....
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999985 5666555556778888777754
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.36 E-value=0.013 Score=65.90 Aligned_cols=184 Identities=9% Similarity=0.021 Sum_probs=102.8
Q ss_pred CCEEEEEEcCCCCEEEEEE------cCC--eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC---------
Q 002881 16 ERVKSVDLHPSEPWILASL------YSG--TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--------- 78 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 78 (871)
..+.+.++||+|..+|... .++ .+.+++. .+.. ..+.. ....+.-.|+|+|.+|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999888765 233 4555554 2222 33332 2247888999999988877543
Q ss_pred ---CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE---EECCCCceEE----EEeecCCcceEEE
Q 002881 79 ---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL---WDWEKGWMCT----QIFEGHSHYVMQV 148 (871)
Q Consensus 79 ---g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~----~~~~~~~~~v~~~ 148 (871)
+.+.+.+++.+.... ...+.|..+.|||||.+++... +|.|.+ -....+.... .....-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 233333333332222 2345799999999999988766 477777 3433442111 1112233346889
Q ss_pred EEecCCCCEEEEEECCCcEEEEE--CCCCCCeEEEec--CCCCeeEEEEeecCCcCEEEEEeCCCeEEE
Q 002881 149 TFNPKDTNTFASASLDRTIKIWN--LGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (871)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v 213 (871)
.|.+ ++. |+++..++.-.+|. +...... .+.. ...++..++-+++ -+++...+|.+.+
T Consensus 503 ~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~----~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRT-GDS-LVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS----TVYVTDARAVLQL 564 (591)
T ss_pred eEec-CCE-EEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc----eEEEEcCCceEEe
Confidence 9997 554 55655555444454 4333221 1122 2345555555432 2555555664433
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.12 Score=52.99 Aligned_cols=218 Identities=11% Similarity=0.103 Sum_probs=128.4
Q ss_pred EEEcCCCCEEEE-EEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---
Q 002881 21 VDLHPSEPWILA-SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--- 96 (871)
Q Consensus 21 i~~s~~~~~la~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--- 96 (871)
..|.|++..|+- --..+.|+-|+..+++. ..+. +.+.+.++.....+..|+++.. | +.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEecccc
Confidence 457888775544 44478899999876643 3343 2333455555555555555433 2 5566666665533322
Q ss_pred --cCCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 97 --AHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 97 --~~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
........+...|+|.+-++... -|.|+.+|. .+ ........+-..-..++|+| +++.|+.+..
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSP-DGKTLYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECC-CCCEEEEEeC
Confidence 12234567888899876664433 143444443 33 45555555555567899999 6666666554
Q ss_pred -CCcEEEEECCC--CC---C--eEEEecCCCCeeEEEEeecCCcCEEEEEeCCC-eEEEEECCCCceEEEecCcccCeEE
Q 002881 164 -DRTIKIWNLGS--PD---P--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSA 234 (871)
Q Consensus 164 -dg~i~i~d~~~--~~---~--~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~ 234 (871)
.+.|.-|++.. +. . ........+..-.++...+|. +.+++..+| .|.+|+.. ++.+..+..+...+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~--lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN--LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC--EEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 47888887752 11 1 111222334445566655554 443444444 89999988 9998888877677888
Q ss_pred EEEcC-CCCEEEEEE
Q 002881 235 VCFHP-ELPIIITGS 248 (871)
Q Consensus 235 i~~~p-~~~~l~~~~ 248 (871)
++|-- +.+.|.+.+
T Consensus 260 ~~FgG~~~~~L~iTs 274 (307)
T COG3386 260 PAFGGPDLNTLYITS 274 (307)
T ss_pred ceEeCCCcCEEEEEe
Confidence 88854 444444433
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.24 E-value=0.042 Score=62.81 Aligned_cols=134 Identities=11% Similarity=0.133 Sum_probs=97.0
Q ss_pred cCCeEEEEeCCCCceeEEeeecCCC-EEEEEEeC-----CCCEEEEEeCCCeEEEEECCCC-cEEEEEc----cCCCCeE
Q 002881 35 YSGTVCIWNYQSQTMAKSFEVTELP-VRSAKFVA-----RKQWVVAGADDMFIRVYNYNTM-DKVKVFE----AHTDYIR 103 (871)
Q Consensus 35 ~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~----~~~~~i~ 103 (871)
..+.|+-.|++.|+.+..+..+... |..++-.. +....++|-.++.+..||.+-. .++..-. ......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4578999999999999999987653 55554321 1345677888889999998743 2221111 2345678
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002881 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (871)
Q Consensus 104 ~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (871)
|++-+.+| +||+|+.+|.|++||- .+......+.+-..+|..++.+. +++++++.+ +..+.+++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEE
Confidence 88888777 8999999999999994 44455666777789999999998 777776655 456777764
No 373
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.59 Score=51.83 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=66.5
Q ss_pred eccCCHHHHHHHHHHcCCh-----HHHHHHHHHHHHc---CChhhHHHHHHHcCC--cchhHHHHHhcCCHHHHHHHHHH
Q 002881 650 IQLGRLEVAQEIATEVQSE-----SKWKQLGELAMST---GKLEMAEGCMKQAMD--LSGLLLLYSSLGDAEGISKLASL 719 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~~~~-----~~w~~la~~al~~---~~~~~A~~~y~~~~d--~~~l~~l~~~~~~~~~~~~l~~~ 719 (871)
+..+.+..|.++|+-++-| .....+|....++ .+-+.+...=.|.++ .+++. ...+|+.
T Consensus 448 ~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iS-----------y~~iA~~ 516 (829)
T KOG2280|consen 448 VDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGIS-----------YAAIARR 516 (829)
T ss_pred HhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCcee-----------HHHHHHH
Confidence 4567788888888766543 3556677777666 334444443344444 33333 3677888
Q ss_pred HHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002881 720 AKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (871)
Q Consensus 720 ~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~ 764 (871)
|...|+..+|..+..+--+-.+-+.+++++++.+.|+.=|..-+.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d 561 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGD 561 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCC
Confidence 888888888887776666666666677777777777755544444
No 374
>PHA02713 hypothetical protein; Provisional
Probab=97.07 E-value=0.035 Score=62.82 Aligned_cols=217 Identities=8% Similarity=0.015 Sum_probs=104.3
Q ss_pred eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCC
Q 002881 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (871)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~ 111 (871)
.+..||..+++....-.............-++...++|+.+ ..+..||..+......-.-....-......-+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 57788887765433211111111111222366677777753 357788887765422111111111111222256
Q ss_pred CEEEEEECCC-----eEEEEECCCCceEEE--EeecCCcceEEEEEecCCCCEEEEEECCC-------------------
Q 002881 112 PYVLSSSDDM-----LIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDTNTFASASLDR------------------- 165 (871)
Q Consensus 112 ~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------------------- 165 (871)
...+.||.++ .+..||..++ .... .+.........+.. ++.+.+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDD-KWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCC-eEEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccc
Confidence 6777777654 4888998876 2222 11111111112222 567777777553
Q ss_pred ----cEEEEECCCCCCeEEEecCCCCe-eEEEEeecCCcCEEEEEeCC------CeEEEEECCC-Cce--EEEecCcccC
Q 002881 166 ----TIKIWNLGSPDPNFTLDAHQKGV-NCVDYFTGGDKPYLITGSDD------HTAKVWDYQT-KSC--VQTLEGHTHN 231 (871)
Q Consensus 166 ----~i~i~d~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~l~~~~~d------g~i~v~d~~~-~~~--~~~~~~~~~~ 231 (871)
.+..||..+.+-...-.-..... .+++ .-++. +.+.|+.+ ..+..||..+ .+- +..+......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~--IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDD--IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEE-EECCE--EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 46778876654221111001111 1122 22333 55666543 2467899886 332 2233222222
Q ss_pred eEEEEEcCCCCEEEEEECCC--cEEEEeCCCCeE
Q 002881 232 VSAVCFHPELPIIITGSEDG--TVRIWHATTYRL 263 (871)
Q Consensus 232 v~~i~~~p~~~~l~~~~~dg--~v~iwd~~~~~~ 263 (871)
...+.+ ++.+.++||.+| .+..||..+.+-
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 222222 567888999888 677777766553
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.06 E-value=0.068 Score=44.36 Aligned_cols=102 Identities=20% Similarity=0.378 Sum_probs=69.5
Q ss_pred eeEEEEee---cCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE
Q 002881 188 VNCVDYFT---GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (871)
Q Consensus 188 i~~i~~~~---~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (871)
|+++++.. +|. +-|++|+.|..|++|+- ...+..+. ....|++++-.+. ..++.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 44555544 333 37999999999999984 35566665 4567888887776 57888999999999984 2334
Q ss_pred EEEecCCccEEEEEEeeCC----CeEEEEEcCCeEEE
Q 002881 265 NTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMV 297 (871)
Q Consensus 265 ~~~~~~~~~i~~i~~~~~~----~~l~~g~~dg~i~i 297 (871)
+..... ..+.++.+..-. +-|++|-.+|.+-+
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444433 346666655433 36889999988754
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.15 Score=50.06 Aligned_cols=169 Identities=9% Similarity=0.061 Sum_probs=113.2
Q ss_pred eecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 002881 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (871)
Q Consensus 54 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~ 132 (871)
.+-...+.++.|+|+.+.|++......-.|+=..+|+.+.++.- --.....|.+..++.+.++--.++.+.+..+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 34445599999999999999998888888887788999888752 12234568888888887777778888888776552
Q ss_pred eEEEE---------eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE---ecC-------CCCeeEEEE
Q 002881 133 MCTQI---------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAH-------QKGVNCVDY 193 (871)
Q Consensus 133 ~~~~~---------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~-------~~~i~~i~~ 193 (871)
..... ..+.+...-.++|+| .+..|..+-+-.-+.||........... ..+ -..+..+.|
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 22211 111245678899999 6777777777777777776533211111 011 123556677
Q ss_pred eecCCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
.+..+. +++-+.+++.+.-.|.. |.++..+
T Consensus 241 ~~~~~~-LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 241 NAITNS-LLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCCCCc-EEEEecCCceEEEEecC-CCeeeeE
Confidence 665443 77888888888888865 5544443
No 377
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.06 E-value=0.045 Score=45.41 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=68.9
Q ss_pred EEEEEEeC---CC-CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 002881 60 VRSAKFVA---RK-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (871)
Q Consensus 60 v~~~~~~~---~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (871)
|+++++.. +| +.|++||+|..|++|+-+ +.+..+.. .+.|+++.-... ..++.+..+|+|-+|+-... .-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--ee
Confidence 56666654 32 679999999999999844 56666654 456777777765 57999999999999985432 22
Q ss_pred EEeecCCcceEEEEEec---CCCCEEEEEECCCcEE
Q 002881 136 QIFEGHSHYVMQVTFNP---KDTNTFASASLDRTIK 168 (871)
Q Consensus 136 ~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~i~ 168 (871)
+.-.. +.++++.+.. ++...|++|-.+|.|-
T Consensus 76 RiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22222 3366666553 2234788888888774
No 378
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0057 Score=68.69 Aligned_cols=141 Identities=22% Similarity=0.223 Sum_probs=95.0
Q ss_pred HHHHHHHHhCCChhhhhhcccCcccceeee--------eccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHH
Q 002881 620 NSVARFLESRGMIEEAIEVATDPDYRFELA--------IQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCM 691 (871)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~--------l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y 691 (871)
..++......+.+++|+.+. ++|+|+ =..+++|.|+++|...+.|..|.+||.+-++.+.+..|++.|
T Consensus 1052 ~~ia~iai~~~LyEEAF~if----kkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIF----KKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHH----HHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHH
Confidence 34444444455555555443 233332 246899999999999999999999999999999999999999
Q ss_pred HHcCCcchhH---HHHHhcCCHHH---------------------------------------------HHHHHHHHHHc
Q 002881 692 KQAMDLSGLL---LLYSSLGDAEG---------------------------------------------ISKLASLAKEQ 723 (871)
Q Consensus 692 ~~~~d~~~l~---~l~~~~~~~~~---------------------------------------------~~~l~~~~~~~ 723 (871)
.++.|-..-+ .+....|..+. ++.+++.+..+
T Consensus 1128 ikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1128 IKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhh
Confidence 9998764222 22222333222 23444445556
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002881 724 GKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (871)
Q Consensus 724 ~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~ 764 (871)
+.+..|..+|....++.+-.-.++..|.+.-|+.-||+-..
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 66666666776667777777777778888888777776543
No 379
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.04 E-value=0.056 Score=61.86 Aligned_cols=144 Identities=10% Similarity=0.041 Sum_probs=98.5
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCcEEEEEccCCCC-eEEEEEcC-----CCCEEEEEECCCeEEEEECCCCc-eEEEE-e
Q 002881 68 RKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAHTDY-IRCVAVHP-----TLPYVLSSSDDMLIKLWDWEKGW-MCTQI-F 138 (871)
Q Consensus 68 ~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~i~~~~-----~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~ 138 (871)
+.++|+.. .....|+-.|++.|+.+..+..|... |..++-.. +....++|-.+..+..||.+-.. .+... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 34578999999999999999877654 55443321 13356778888999999998542 22211 1
Q ss_pred --ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 139 --EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 139 --~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
-.......|++-+ ...++|+|+.+|.|++||--+.+....+.+...+|..+..+.+|. ++++. .+..+.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk--wilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK--WILAT-CKTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc--EEEEe-ecceEEEEEE
Confidence 1123446677666 577999999999999999654444455567789999999999998 44444 4567777775
No 380
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.18 Score=49.38 Aligned_cols=165 Identities=10% Similarity=0.115 Sum_probs=117.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
+.|-...|.++.|+|+.+.|++......-.|+=...|+.++++... -...-.+.|..+|++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3445556999999999998888887777778877889998887632 234567888888887777777888988877654
Q ss_pred cEEEEE----------ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE--EEEeecC-------CcceEEEEE
Q 002881 90 DKVKVF----------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC--TQIFEGH-------SHYVMQVTF 150 (871)
Q Consensus 90 ~~~~~~----------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-------~~~v~~~~~ 150 (871)
...... ...+.....++|.|.+..|+.+-+-.-+.||.+...... ......+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 322111 122567889999999999999988877888776643111 1111111 124678889
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCC
Q 002881 151 NPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
++..++.++.+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 9878888898999999988887544
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.014 Score=66.37 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=76.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEE
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (871)
++..++-.-.+.+++.|++.|.+-..|+.+. .+...-..-.++|++++|+.+|..++.|-.+|.|.+||...+ ...+.
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~ 167 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKV 167 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceee
Confidence 3444444446678999999999988887642 111222234678999999999999999999999999999987 55565
Q ss_pred eecCCcceEE---EEEecCCCCEEEEEECCCcEEEEEC
Q 002881 138 FEGHSHYVMQ---VTFNPKDTNTFASASLDRTIKIWNL 172 (871)
Q Consensus 138 ~~~~~~~v~~---~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (871)
+..|..+.+. +.|.. ++..++++...|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 5555554443 34444 4556888777776 5554
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.00 E-value=0.51 Score=48.11 Aligned_cols=271 Identities=9% Similarity=0.058 Sum_probs=120.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC----CcceEEEEEecCCCCEEEEEECCCcEEEEECC
Q 002881 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (871)
-..++..|.|..+..-.++| ..+.|. -..+.+..-....... .....++.|.. ...+++| ..+ +.+...+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEEE-EESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEEE-EECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 35578999999555555554 455442 2333332222221111 23466777764 4445544 444 4444445
Q ss_pred CCCCeEEEe---cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-EEEecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 174 SPDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 174 ~~~~~~~~~---~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
.++.-..+. ..++....+....++ .....+..|.|..= ...|+. ........+.+..+.-+++|.++++++.
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~---~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG---SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT---EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC---cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 554433332 122333334433333 23334455544332 222332 2223445567888999999998888865
Q ss_pred CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEee
Q 002881 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKS 329 (871)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (871)
-....-|+-....-...-.....+|.++.|.|++...+++ ..|.+++-. .++..--|..
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~---------~~~~~~~w~~----------- 223 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD---------DPDDGETWSE----------- 223 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE----------TTEEEEE-------------
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc---------CCCCcccccc-----------
Confidence 5455567643211111222244789999999997765544 777776631 0000000100
Q ss_pred cCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeec---ccc-----cCcCceeEEEEecCC
Q 002881 330 VGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA---WRN-----RSFGSALEFVWSSDG 401 (871)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~---~~~-----~~~~~~~~~~~s~~~ 401 (871)
...........+-.+++.+++...|+++.|.+.. +... |+. ........+.|.++.
T Consensus 224 ---------------~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 224 ---------------PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp ----------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred ---------------ccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCC
Confidence 0000111112235789999999999998886553 3322 221 223456677777666
Q ss_pred cEEEEecCCeEEEe
Q 002881 402 EYAVRESSSKIKIF 415 (871)
Q Consensus 402 ~~~~~~~~~~i~i~ 415 (871)
+-++.+.+|.|--|
T Consensus 288 ~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 288 KGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEE-STTEEEEE
T ss_pred ceEEECCCcEEEEe
Confidence 66677777765443
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.99 E-value=0.077 Score=59.88 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=102.0
Q ss_pred CCEEEEEEeCCCCEEEEEe------CCC--eEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC---------
Q 002881 58 LPVRSAKFVARKQWVVAGA------DDM--FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--------- 120 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------- 120 (871)
..+...+.+|+|+.++... .|+ .|.+++.. +.......+ ...+.-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3678899999999988765 243 55555643 222222232 237889999998877776532
Q ss_pred ---CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEE---EECCCCCCe----EEEec-CCCCee
Q 002881 121 ---MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI---WNLGSPDPN----FTLDA-HQKGVN 189 (871)
Q Consensus 121 ---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i---~d~~~~~~~----~~~~~-~~~~i~ 189 (871)
+.+.+.+++.++. .. .....|..+.|+| ++..++... +|.|.+ -....+... ..+.. ....+.
T Consensus 427 ~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAV-AS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchh-hh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 2333334443311 11 2345699999999 676666655 477777 343344311 11222 223357
Q ss_pred EEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecC--cccCeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 190 ~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~--~~~~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
.+.|..++. |+++..++.-.+|.+.- |.....+.. ...++.+++-+++ .++....+|.+.+
T Consensus 501 ~l~W~~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 501 SLDWRTGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cceEecCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 889998876 45555554444444321 322222222 2456777777663 3445555654443
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.99 E-value=0.25 Score=46.49 Aligned_cols=213 Identities=12% Similarity=0.145 Sum_probs=112.2
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeE-EeeecCCCEEEEEEeC-CC-CEEEEE-eCCCeEEEEECC--CCcEEEEEc-----
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAK-SFEVTELPVRSAKFVA-RK-QWVVAG-ADDMFIRVYNYN--TMDKVKVFE----- 96 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~-~~-~~l~~~-~~dg~i~iw~~~--~~~~~~~~~----- 96 (871)
.++.+--..|.|.-||+...+..+ ++++ .++..+.+-- ++ +..+++ +..-.|.-||.. ......++.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 345555557778889987654433 2222 2233333322 22 223333 333334446622 222233311
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECC---------CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSDD---------MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
....+...-..+|+|++..-.-.| |.++.|-.... +.... ..-.--..++|+.+...+.++-+.+-+|
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeee-hhccCCccccccccCcEEEEEccCceEE
Confidence 113455667788999884322122 33444433321 11111 1112235688887434445556667778
Q ss_pred EEEE--CCCCC-----CeEEEec---CC-CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEE
Q 002881 168 KIWN--LGSPD-----PNFTLDA---HQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (871)
Q Consensus 168 ~i~d--~~~~~-----~~~~~~~---~~-~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~ 236 (871)
.-|| ..++. .+..++. .. .....+++. +++.+.++....++|...|..+|+.+..+.-....|++++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID--~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID--TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc--cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7777 44432 2222221 11 111233333 3444788888899999999999999999998899999999
Q ss_pred EcCC-CCEEEEE
Q 002881 237 FHPE-LPIIITG 247 (871)
Q Consensus 237 ~~p~-~~~l~~~ 247 (871)
|-.. -..+.+.
T Consensus 261 FgGkn~d~~yvT 272 (310)
T KOG4499|consen 261 FGGKNLDILYVT 272 (310)
T ss_pred ecCCCccEEEEE
Confidence 9643 3344433
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.98 E-value=0.0023 Score=42.02 Aligned_cols=39 Identities=41% Similarity=0.609 Sum_probs=34.1
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
++....+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 386
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.97 E-value=0.72 Score=49.29 Aligned_cols=146 Identities=12% Similarity=0.121 Sum_probs=88.0
Q ss_pred CCEEEEEECCCeEEEEECCCCc-eE--EEEeecCCcceEEEEEe---cCCC-CEEEEEECCCcEEEEECCCCC-------
Q 002881 111 LPYVLSSSDDMLIKLWDWEKGW-MC--TQIFEGHSHYVMQVTFN---PKDT-NTFASASLDRTIKIWNLGSPD------- 176 (871)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~-~~--~~~~~~~~~~v~~~~~~---p~~~-~~l~~~~~dg~i~i~d~~~~~------- 176 (871)
...|++||..|.++||+...+. .. ...-..-..+|.++..- +... ..|++ -.-..+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 3589999999999999986542 11 11112235678777654 2223 33444 456788888873211
Q ss_pred --CeEEEecCC--CCeeEEEEeecCC---cCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 177 --PNFTLDAHQ--KGVNCVDYFTGGD---KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 177 --~~~~~~~~~--~~i~~i~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
.+.....|. .....+++-|-|. ..++++-+.||.+.+|+-+.-.....+.. .--...+++.|..+.|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111111222 2233444444332 35899999999999999654333333332 222345788888889999998
Q ss_pred CCcEEEEeC
Q 002881 250 DGTVRIWHA 258 (871)
Q Consensus 250 dg~v~iwd~ 258 (871)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888864
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.95 E-value=0.0025 Score=41.75 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=33.7
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
.....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566777889999999999999999999999999995
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.91 E-value=0.77 Score=49.62 Aligned_cols=151 Identities=11% Similarity=0.047 Sum_probs=90.8
Q ss_pred CCCEEEEEEcCCCCEEEEEE--cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCC----CCEEEEEeCCCeEEEEECC-
Q 002881 15 SERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR----KQWVVAGADDMFIRVYNYN- 87 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~- 87 (871)
-.+|..++|.-....+++.. .+|.++.=| ...+..| ..|..+.|.|- ...+........|.||-+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 35788999984444444543 255544333 1223333 35889999985 3456666677899999875
Q ss_pred ----CCcEEEEEccC---CC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 88 ----TMDKVKVFEAH---TD--YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 88 ----~~~~~~~~~~~---~~--~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
+++.+..-..+ .- -...+.|+|....|++-+....-.+++++........--...+.|.|.+|.+ +++.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEE
Confidence 22222221111 11 1245789999988887766655566676654333443335667899999999 55555
Q ss_pred EEE-ECCCcEEEEECC
Q 002881 159 ASA-SLDRTIKIWNLG 173 (871)
Q Consensus 159 ~~~-~~dg~i~i~d~~ 173 (871)
+++ +..=.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 544 444456788854
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.011 Score=67.04 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCcee--EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeE
Q 002881 26 SEPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (871)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~ 103 (871)
.+.+++.|++.|.|...|+.. .+. ..-....++|++++|+.+|..++.|-.+|.|.+||...++..+.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 355788888899999888644 222 12222457999999999999999999999999999999999888876655544
Q ss_pred E---EEEcCCCCEEEEEECCCeEEEEEC
Q 002881 104 C---VAVHPTLPYVLSSSDDMLIKLWDW 128 (871)
Q Consensus 104 ~---i~~~~~~~~l~~~~~dg~i~iwd~ 128 (871)
. +.|..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3 445556667778777775 5554
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.38 Score=49.34 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=127.2
Q ss_pred EEeCCCCEEEEE-eCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee---
Q 002881 64 KFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--- 139 (871)
Q Consensus 64 ~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 139 (871)
.|.++...|+-. -..+.|.-|+..+++. ..+.. .+.+.++..-..+..|+++.. .+.+++.+++........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 567777755544 4477888898876543 23332 233455555444555655543 356677665523122211
Q ss_pred c-CCcceEEEEEecCCCCEEEEEEC-----------CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC
Q 002881 140 G-HSHYVMQVTFNPKDTNTFASASL-----------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 140 ~-~~~~v~~~~~~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
+ .......+...| ++.+-++... -|.++.+|. .+.....+..+-..-+.++|||+++. ++++=+.
T Consensus 107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t-ly~aDT~ 183 (307)
T COG3386 107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT-LYVADTP 183 (307)
T ss_pred CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE-EEEEeCC
Confidence 1 123445667777 4544443222 133444443 34444544544556688999999973 4444455
Q ss_pred CCeEEEEECCC--C----ce-EEEecCcccCeEEEEEcCCCCEEEEEECCC-cEEEEeCCCCeEEEEEecCCccEEEEEE
Q 002881 208 DHTAKVWDYQT--K----SC-VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHATTYRLENTLNYGLERVWAIGY 279 (871)
Q Consensus 208 dg~i~v~d~~~--~----~~-~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~i~~i~~ 279 (871)
.+.|.-|++.. + +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+...+.+++|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 68888887752 1 11 222222345566778888888775555444 89999977 9999988888777788887
Q ss_pred ee-CCCeEEEEE
Q 002881 280 MK-SSRRIVIGY 290 (871)
Q Consensus 280 ~~-~~~~l~~g~ 290 (871)
-- +.+.|.+.+
T Consensus 263 gG~~~~~L~iTs 274 (307)
T COG3386 263 GGPDLNTLYITS 274 (307)
T ss_pred eCCCcCEEEEEe
Confidence 53 345555443
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.87 E-value=0.65 Score=47.34 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=104.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE--ccC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF--EAH---TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~ 130 (871)
...++..+.|..+..-+++|. .+.| +-..+.|+.-... ... .-....+.|..+ ...+++..|. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGEPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcCCce-EEEecCC
Confidence 456899999986666666654 4543 2222333221111 111 123567777643 3334455554 3444444
Q ss_pred CceEEEEe--ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-eEEEecCCCCeeEEEEeecCCcCEEEEEeC
Q 002881 131 GWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 131 ~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
+..-..+. ..-......+.... ......++..|.|..- .+.++. ........+.+..+.-++++. +++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~--~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vavs~~ 164 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALG--DGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGR--YVAVSSR 164 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEE--TTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS---EEEEETT
T ss_pred CCCcEEeecCCCCCCCeeEEEEcC--CCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCc--EEEEECc
Confidence 43333321 12223333444433 2344445555655333 233332 223344556778887777776 6777766
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCCeEEEE--Ee--cCCccEEEEEEeeC
Q 002881 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA-TTYRLENT--LN--YGLERVWAIGYMKS 282 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~-~~~~~~~~--~~--~~~~~i~~i~~~~~ 282 (871)
...+.-||.....-...-+.....|.++.|.|++.+.+++ ..|.|++=+. .....-.. .. ...-.+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 6666778754222222223346789999999998766654 7888888772 22222111 11 12234788999988
Q ss_pred CCeEEEEEcCCeEEE
Q 002881 283 SRRIVIGYDEGTIMV 297 (871)
Q Consensus 283 ~~~l~~g~~dg~i~i 297 (871)
+...++| ..|.+..
T Consensus 244 ~~~wa~g-g~G~l~~ 257 (302)
T PF14870_consen 244 NEIWAVG-GSGTLLV 257 (302)
T ss_dssp S-EEEEE-STT-EEE
T ss_pred CCEEEEe-CCccEEE
Confidence 7766655 4455544
No 392
>PRK10115 protease 2; Provisional
Probab=96.85 E-value=1.5 Score=51.13 Aligned_cols=237 Identities=10% Similarity=0.005 Sum_probs=124.2
Q ss_pred CEEEEEEcCCCCEEEEEEc-C----CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC------CeEEEEE
Q 002881 17 RVKSVDLHPSEPWILASLY-S----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYN 85 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~-d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~ 85 (871)
.+..+.|||||++|+.+.. + ..|++.|+.+|..+...- ...-..++|++|++.|+.+..+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4778899999999988654 2 358899998886432211 1111469999999877766442 3788888
Q ss_pred CCCC--cEEEEEccCCCCeE-EEEEcCCCCEEEEEEC---CCeEEEEECC--CCceEEEEeecCCcceEEEEEecCCCCE
Q 002881 86 YNTM--DKVKVFEAHTDYIR-CVAVHPTLPYVLSSSD---DMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 86 ~~~~--~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
+.++ +....+........ .+..+.++++++..+. ++.+.+++.. ++ .....+.........+. +. + ..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~-~~ 281 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HY-Q-HR 281 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eC-C-CE
Confidence 8887 44444543333333 3333447887765543 4578888853 23 11222222222222222 32 2 33
Q ss_pred EEEEECC----CcEEEEECCCCCCeEEEecC-C-CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEec-Ccc
Q 002881 158 FASASLD----RTIKIWNLGSPDPNFTLDAH-Q-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLE-GHT 229 (871)
Q Consensus 158 l~~~~~d----g~i~i~d~~~~~~~~~~~~~-~-~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~-~~~ 229 (871)
|...+.. ..|...++........+..+ . ..+..+.++ ++. ++++...+|.-+++-+.. +..+..+. ...
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~-l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDW-LVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCE-EEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 3333332 23444455422222333333 2 357777776 332 666666677655554332 22333333 222
Q ss_pred cCeEEEEEc--CCCC-EEEEEE---CCCcEEEEeCCCCe
Q 002881 230 HNVSAVCFH--PELP-IIITGS---EDGTVRIWHATTYR 262 (871)
Q Consensus 230 ~~v~~i~~~--p~~~-~l~~~~---~dg~v~iwd~~~~~ 262 (871)
..+..+.++ +++. ++++.+ .-+.+..+|..+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 223333444 3333 444333 34568888877654
No 393
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.00022 Score=73.28 Aligned_cols=279 Identities=9% Similarity=0.064 Sum_probs=167.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~ 92 (871)
|-.......|-|.+.-+++++.+..|..|| +.++...... ..+....++|..+++.+++. -..+.+.+|++++....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 444566778889887799999999999999 4454444333 34556678999988877654 45789999998764321
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc------
Q 002881 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT------ 166 (871)
Q Consensus 93 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~------ 166 (871)
..-.+.+..-.-+.|++..+.++.+...|.+.|++..+. ........|..++++++|.+ .++.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVTTQ 187 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccch-hhhhhhcccccceeEEEecc--cceeeecCcHHHHHHhhh
Confidence 111122222233889999999999999999999998876 33334445899999999998 445555555433
Q ss_pred ----EEEEECCCC-----------------------------------------CCeEEEecCCCCeeEEEEeecCCcCE
Q 002881 167 ----IKIWNLGSP-----------------------------------------DPNFTLDAHQKGVNCVDYFTGGDKPY 201 (871)
Q Consensus 167 ----i~i~d~~~~-----------------------------------------~~~~~~~~~~~~i~~i~~~~~~~~~~ 201 (871)
+..+..++. ..-..++...+.+.|+.|.-+|.
T Consensus 188 egeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~--- 264 (615)
T KOG2247|consen 188 EGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY--- 264 (615)
T ss_pred ccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc---
Confidence 233322110 00113333445677777877763
Q ss_pred EEEEeCCCeEEEEECCCCceEEEe---cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE--EEEEecCCccEEE
Q 002881 202 LITGSDDHTAKVWDYQTKSCVQTL---EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL--ENTLNYGLERVWA 276 (871)
Q Consensus 202 l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~i~~ 276 (871)
|..+.+-|.|..-+..+++....+ ..+.+.+.+++.|..-+-.++.+ |+.+++-|...-.. ...+.........
T Consensus 265 i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsqcvnkaftlg-dn~nkvRdl~el~e~y~n~L~eaek~lge 343 (615)
T KOG2247|consen 265 ILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQCVNKAFTLG-DNMNKVRDLDELTEVYMNTLIEAEKNLGE 343 (615)
T ss_pred ccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 777777777777776665442221 13555555555554333333333 33444433221000 0001111112234
Q ss_pred EEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 277 IGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 277 i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
+.|.-+|++++.++..|...+.+.+
T Consensus 344 ~~~t~dgqlyals~Q~g~l~~fLtK 368 (615)
T KOG2247|consen 344 IEVTEDGQLYALSSQSGVLSIFLTK 368 (615)
T ss_pred eeeeeccceeeehhccchHHHHHHh
Confidence 5677788888888888887765544
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.0019 Score=60.16 Aligned_cols=141 Identities=10% Similarity=0.113 Sum_probs=76.1
Q ss_pred EEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE-EecCCCCeeEEE
Q 002881 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVD 192 (871)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~ 192 (871)
+...+.||.|.-++++......+.-. .+.+..-.+.....+++|+.+|.|.+|.......... .......|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~----~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER----FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh----hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 44456677777777664322111111 1111111222456899999999999998863221111 111222232222
Q ss_pred EeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc-cCeEEEEEcCCCCEEEEE--ECCCcEEEEeCC
Q 002881 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHPELPIIITG--SEDGTVRIWHAT 259 (871)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~i~~~p~~~~l~~~--~~dg~v~iwd~~ 259 (871)
-. .....+.++++.+|.|+.|+..-.+.+-....|. .++.....+..+.++... |.|..++.|++.
T Consensus 109 p~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 109 PN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cc-ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 11 1122378899999999999998777666665565 344444444444444444 555555555544
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.74 E-value=0.67 Score=45.58 Aligned_cols=180 Identities=11% Similarity=0.050 Sum_probs=109.5
Q ss_pred EEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCceeEEeeecCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 002881 18 VKSVDLHPSEPWILASLYSG--TVCIWNYQSQTMAKSFEVTEL-PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 94 (871)
...+.|..+|.++-+.+.-| .|+.+|+.+++.......... ---.++.. ++......-.++...+||.++.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 34677767777666666544 699999999988766553321 11223333 223333445689999999999999988
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeec--CC---cceEEEEEecCCCCEEEEEECCCcEEE
Q 002881 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG--HS---HYVMQVTFNPKDTNTFASASLDRTIKI 169 (871)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~---~~v~~~~~~p~~~~~l~~~~~dg~i~i 169 (871)
+.-. +.=+.++ .++..|+.+.....|..+|..+.... ..+.. .. ..+.-+.|. ++.+.+=.-....|..
T Consensus 126 ~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~-~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV-RTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE-EEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEE
T ss_pred EecC-CcceEEE--cCCCEEEEECCccceEEECCcccceE-EEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEE
Confidence 8643 4456666 45667777777789999998876333 22221 22 234556776 4556665666677888
Q ss_pred EECCCCCCeEEEec---------------CCCCeeEEEEeecCCcCEEEEE
Q 002881 170 WNLGSPDPNFTLDA---------------HQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 170 ~d~~~~~~~~~~~~---------------~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
.|..++.....+.. ...-.+.|+|.|..+. ++++|
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-LFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-EEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-EEEEe
Confidence 88888876655420 1245789999988764 66666
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.33 Score=47.17 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=69.3
Q ss_pred EEEEEecCCCCEEEEEECCCc-EEEEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEEEeC-----CCeEEEEECC
Q 002881 146 MQVTFNPKDTNTFASASLDRT-IKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSD-----DHTAKVWDYQ 217 (871)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~-----dg~i~v~d~~ 217 (871)
..++++|....-++.+-.-|+ ..++|..+.+...++...+.. .-.-.|+|+|. +|.+.-. -|.|-+||.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--LLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--EEEeecCCCCCCCceEEEEecc
Confidence 346778866677777777665 468898887766665433322 12345888887 5554433 3789999987
Q ss_pred CC-ceEEEecCcccCeEEEEEcCCCCEEEEEE
Q 002881 218 TK-SCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 218 ~~-~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
.+ +.+-.+..|.-....+.|.+||..++.+.
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 53 44667777877788899999999888763
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.70 E-value=0.13 Score=58.14 Aligned_cols=227 Identities=12% Similarity=0.089 Sum_probs=115.7
Q ss_pred CCCEEEEEEcC------CeEEEEeCCCCceeEEeeec-CCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEE
Q 002881 26 SEPWILASLYS------GTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMDKV 92 (871)
Q Consensus 26 ~~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~ 92 (871)
.+..+++|+.+ ..+..||..++......... ...-.+++.. ++...++|+.| .++..||..+.+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 35566777766 35888998887544432222 2223334433 55777888888 36778888776644
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC--
Q 002881 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDM-----LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-- 165 (871)
Q Consensus 93 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-- 165 (871)
..-.-.......-.-.-+|...++||.|| ++-.||..+. ..... ..............-++.+.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~-~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN-KWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC-ccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 32111111111111122577788888885 4777887765 21111 111111222222222577888888654
Q ss_pred ----cEEEEECCCCCCeEE--EecCCCCeeEEEEeecCCcCEEEEEeCCC-----eEEEEECCCCceEEE--ecCcccCe
Q 002881 166 ----TIKIWNLGSPDPNFT--LDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQT--LEGHTHNV 232 (871)
Q Consensus 166 ----~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~--~~~~~~~v 232 (871)
++..||..+++-... +........ ++.. ++. +.++|+.++ +|..||..+.+-... +......+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~--iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGK--IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEEE-CCE--EEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 467888776543221 111112222 2221 232 677777665 377788876554322 12122222
Q ss_pred EEEEEcCCCCEEEEEECCCc-----EEEEeCCCC
Q 002881 233 SAVCFHPELPIIITGSEDGT-----VRIWHATTY 261 (871)
Q Consensus 233 ~~i~~~p~~~~l~~~~~dg~-----v~iwd~~~~ 261 (871)
.... -++...++|+.||. |..||..+.
T Consensus 517 g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 517 GVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 2222 24567778887764 555554443
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.78 Score=44.73 Aligned_cols=230 Identities=15% Similarity=0.151 Sum_probs=131.5
Q ss_pred CEEEEEEeCCCCE-EEEEeCCC-eEEEEECCCCcEEEEEccCCCC--eEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 002881 59 PVRSAKFVARKQW-VVAGADDM-FIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVLSSSDD-----MLIKLWDWE 129 (871)
Q Consensus 59 ~v~~~~~~~~~~~-l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d-----g~i~iwd~~ 129 (871)
....++|+|.... ++.+-.-| ...++|.++.+...++...++. --.-.|||||.+|...-.| |.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3445777775543 44444444 3567888887766665433322 2235799999988876443 789999999
Q ss_pred CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE--------------------ECCCCCCeEEE--e--cCC
Q 002881 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW--------------------NLGSPDPNFTL--D--AHQ 185 (871)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~--------------------d~~~~~~~~~~--~--~~~ 185 (871)
.+....-.+..|.-....+.|.+ |+..++.+. |-|..- |..++..+.+. . .+.
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred cccceecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 77666666777777778889999 788887765 333332 22222222111 1 122
Q ss_pred CCeeEEEEeecCCcCEEEEEeC-CC-----eEEEEECCCCceEEEecC-------cccCeEEEEEcCCCCEEEEEECCC-
Q 002881 186 KGVNCVDYFTGGDKPYLITGSD-DH-----TAKVWDYQTKSCVQTLEG-------HTHNVSAVCFHPELPIIITGSEDG- 251 (871)
Q Consensus 186 ~~i~~i~~~~~~~~~~l~~~~~-dg-----~i~v~d~~~~~~~~~~~~-------~~~~v~~i~~~p~~~~l~~~~~dg- 251 (871)
..+..++.-+++. +..|+. .| --.+=-...++++..+.. ..+-|-+|+.+.+..+++..|-.|
T Consensus 226 lSiRHld~g~dgt---vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN 302 (366)
T COG3490 226 LSIRHLDIGRDGT---VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN 302 (366)
T ss_pred cceeeeeeCCCCc---EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence 3455555544443 333321 11 011111112333333321 233477888887666777666544
Q ss_pred cEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 252 TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
...+||..+|..+...... -+....+...-+++.+.+|.+.++
T Consensus 303 ~~vi~da~tG~vv~~a~l~----daaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 303 RAVIWDAATGAVVSEAALP----DAAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred eEEEEEcCCCcEEeccccc----ccccceeccCceEEecCCceEEec
Confidence 5778999999877654332 122333455557778888888764
No 399
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.51 E-value=1.5 Score=46.85 Aligned_cols=270 Identities=14% Similarity=0.197 Sum_probs=145.9
Q ss_pred CCEEEEEEcCCeEEEEeCCCCcee---EEee-ecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCC--Cc-----
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMA---KSFE-VTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNT--MD----- 90 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~---~~~~-~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~--~~----- 90 (871)
...+++|+.+|.++||+...+... ..++ .-+.||..+..-+ +...||+ -.-..+.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998554311 1122 2356887776532 2334555 3456788887621 11
Q ss_pred --EEEEEccCC--CCeEEEEEcC----C-CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 91 --KVKVFEAHT--DYIRCVAVHP----T-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 91 --~~~~~~~~~--~~i~~i~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
.+.....|. .....+++-| . ..+|++=+-||.+.+++-+.- .....+.. ---...+.+.| ..+.|+++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~-~tDsfvt~ 192 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCP-RTDSFVTA 192 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEee-cCCEEEEe
Confidence 122222232 2223333333 1 357888899999999997754 33333333 22234567888 67889999
Q ss_pred ECCCcEEEEECCC---C-----------------C---CeEEEecCCCCeeEEEEeec-CCcCEEEEEeCCCeEEEEECC
Q 002881 162 SLDRTIKIWNLGS---P-----------------D---PNFTLDAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 162 ~~dg~i~i~d~~~---~-----------------~---~~~~~~~~~~~i~~i~~~~~-~~~~~l~~~~~dg~i~v~d~~ 217 (871)
+.+..+..|.... . + +.+++.. ...+..+..... +....+++-+ ...+.+.+-
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~- 269 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD- 269 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-
Confidence 9888888887521 0 0 1111111 112223332221 1111333333 345666664
Q ss_pred CCceEEEecCcccCeEEEE-E------cCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEE---EeeCCCeE
Q 002881 218 TKSCVQTLEGHTHNVSAVC-F------HPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG---YMKSSRRI 286 (871)
Q Consensus 218 ~~~~~~~~~~~~~~v~~i~-~------~p~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~---~~~~~~~l 286 (871)
+|......+- .....+++ | .|+. ..+++++.++++.||. ..++.+.-.....+| ++. +..-...|
T Consensus 270 ~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~I 345 (418)
T PF14727_consen 270 NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGLI 345 (418)
T ss_pred CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCceE
Confidence 3544333332 22222222 2 2221 2588889999999995 445666655544433 333 33335677
Q ss_pred EEEEcCCeEEE-ecCCCcceEE
Q 002881 287 VIGYDEGTIMV-KIGREEPVAS 307 (871)
Q Consensus 287 ~~g~~dg~i~i-~~~~~~~~~~ 307 (871)
++-+++|.+.+ +++.+++...
T Consensus 346 V~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 346 VSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred EEEcCCCcEEEEEeCCCCcccc
Confidence 78888898887 5666665443
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.50 E-value=0.19 Score=56.83 Aligned_cols=219 Identities=15% Similarity=0.130 Sum_probs=113.2
Q ss_pred CCCCEEEEEeCC------CeEEEEECCCCcEEEEEcc-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCce
Q 002881 67 ARKQWVVAGADD------MFIRVYNYNTMDKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWM 133 (871)
Q Consensus 67 ~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d------g~i~iwd~~~~~~ 133 (871)
..+..+++|+.+ ..+..||..++.......- +...-.+++.. ++...++||.| ..+..||..++.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence 345566777766 3677888887654433321 22223344444 35677788888 367888888762
Q ss_pred EEEE--eecCCcceEEEEEecCCCCEEEEEECCCc-----EEEEECCCCCCeEEEecCCCCeeEEEEee-cCCcCEEEEE
Q 002881 134 CTQI--FEGHSHYVMQVTFNPKDTNTFASASLDRT-----IKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLITG 205 (871)
Q Consensus 134 ~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~ 205 (871)
.... +....... .++.. ++.+.++|+.||. +-.||..+.+-...-. ............ ++. +.++|
T Consensus 361 W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~--iYi~G 434 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGK--LYIIG 434 (571)
T ss_pred eeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCE--EEEEc
Confidence 2221 11111111 12222 6788999999874 7778876654222111 111222222222 333 66677
Q ss_pred eCC------CeEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECCCc-----EEEEeCCCCeEEEE--EecC
Q 002881 206 SDD------HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSEDGT-----VRIWHATTYRLENT--LNYG 270 (871)
Q Consensus 206 ~~d------g~i~v~d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~dg~-----v~iwd~~~~~~~~~--~~~~ 270 (871)
+.+ ..+..||..+++.... +........ ++ .-++.+.+.||.|+. |..||..+.+-... ....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 644 3577888877654322 211111111 22 224567888887763 67788776553322 2222
Q ss_pred CccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 271 LERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 271 ~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
...+. ...-++...++|+.+|.-.+
T Consensus 513 rs~~g--~~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 513 RSAVG--VVVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred ccccc--EEEECCEEEEEecccCcccc
Confidence 12111 22235666777777766544
No 401
>PHA02713 hypothetical protein; Provisional
Probab=96.50 E-value=0.31 Score=55.31 Aligned_cols=204 Identities=13% Similarity=0.103 Sum_probs=94.2
Q ss_pred eEEEEECCCCcEEEEEccCCCCe-EEEEEcCCCCEEEEEECC------CeEEEEECCCCceEEEE--eecCCcceEEEEE
Q 002881 80 FIRVYNYNTMDKVKVFEAHTDYI-RCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQI--FEGHSHYVMQVTF 150 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~ 150 (871)
.+..||..+++....-.-..... .+++. -++...++||.+ ..+..||..++ ..... +....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhce-eEEE
Confidence 56778887765432211111111 12222 245666677643 34778898876 22221 11111111 2222
Q ss_pred ecCCCCEEEEEECCC-----cEEEEECCCCCCeEEEecCCCCeeEEE-EeecCCcCEEEEEeCC----------------
Q 002881 151 NPKDTNTFASASLDR-----TIKIWNLGSPDPNFTLDAHQKGVNCVD-YFTGGDKPYLITGSDD---------------- 208 (871)
Q Consensus 151 ~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~i~~i~-~~~~~~~~~l~~~~~d---------------- 208 (871)
. ++.+.+.|+.++ ++..||..+.+-.. ......+..... ..-++. +.+.|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~~~~g~--IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMCVLDQY--IYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEEEECCE--EEEEeCCCcccccccccccccccc
Confidence 2 577888888764 47889987653221 111111111111 112333 56666644
Q ss_pred -------CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCC------cEEEEeCCC-Ce--EEEEEecCCc
Q 002881 209 -------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG------TVRIWHATT-YR--LENTLNYGLE 272 (871)
Q Consensus 209 -------g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg------~v~iwd~~~-~~--~~~~~~~~~~ 272 (871)
..+..||..+.+-...-.........-...-++.+.+.||.++ .+..||..+ .+ .+..++....
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 2477788776543211111111111111222456667776542 467888776 33 2333322211
Q ss_pred cEEEEEEeeCCCeEEEEEcCC
Q 002881 273 RVWAIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 273 ~i~~i~~~~~~~~l~~g~~dg 293 (871)
..-...-+++..++|+.+|
T Consensus 505 --~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 --ALHTILHDNTIMMLHCYES 523 (557)
T ss_pred --cceeEEECCEEEEEeeecc
Confidence 2222223677777888777
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.48 E-value=1.6 Score=47.28 Aligned_cols=145 Identities=12% Similarity=0.174 Sum_probs=86.5
Q ss_pred CCCCEEEEEEcCC----CCEEEEEEcCCeEEEEeCCC-----CceeEEeeec---CC--CEEEEEEeCCCCEEEEEeCCC
Q 002881 14 RSERVKSVDLHPS----EPWILASLYSGTVCIWNYQS-----QTMAKSFEVT---EL--PVRSAKFVARKQWVVAGADDM 79 (871)
Q Consensus 14 h~~~v~~i~~s~~----~~~la~~~~dg~v~iwd~~~-----~~~~~~~~~~---~~--~v~~~~~~~~~~~l~~~~~dg 79 (871)
.-+.|..+.|.|- -+.|++......|.||-+.. ++....-..+ .- -...+.|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3356999999995 44566666788999998752 2222221111 11 235678999999998877765
Q ss_pred eEEEEECCC--CcEEEEEccCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCceE----EEEeecCCcceEEEEEec
Q 002881 80 FIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-MLIKLWDWEKGWMC----TQIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 80 ~i~iw~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~p 152 (871)
.-.++++.. .+....+ ...+.|.|.+|.+||++|+++-.. =.-++||-...... ..++ .-.++|.++.-.
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVF-dv~~~Icsi~AT- 211 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVF-DVGGYICSIEAT- 211 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceee-cCCCceEEEEEe-
Confidence 545566542 2222333 456789999999999988876443 34577875432110 1112 234456666544
Q ss_pred CCCCEEEEEE
Q 002881 153 KDTNTFASAS 162 (871)
Q Consensus 153 ~~~~~l~~~~ 162 (871)
.+..+|+++
T Consensus 212 -~dsqVAvaT 220 (671)
T PF15390_consen 212 -VDSQVAVAT 220 (671)
T ss_pred -ccceEEEEe
Confidence 344555554
No 403
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.049 Score=57.23 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=99.1
Q ss_pred CCCEE-EEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCE-----EEEEeCCCeEEEEECCCC-c-eEEEe
Q 002881 154 DTNTF-ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY-----LITGSDDHTAKVWDYQTK-S-CVQTL 225 (871)
Q Consensus 154 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~-----l~~~~~dg~i~v~d~~~~-~-~~~~~ 225 (871)
+.+++ .++.....++-.|+..++.+..+..+.. |+-+.+.|+.+..- -++|-++..|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 34443 4455556788889999999888876665 77788888754222 356778889999998732 2 22222
Q ss_pred cCc----ccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE-EEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 226 EGH----THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL-ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 226 ~~~----~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
++| .....|.+-..+| +|++||.+|.|++||- .++. -..++.-..+|..+..+.+|++|+..+..-.+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEE
Confidence 222 2346666666666 8999999999999995 5554 3445566678999999999999998887766555
No 404
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.41 E-value=2.6 Score=48.48 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=88.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecC--CCC---EEEEEECCCcEEEEECC
Q 002881 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK--DTN---TFASASLDRTIKIWNLG 173 (871)
Q Consensus 99 ~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~---~l~~~~~dg~i~i~d~~ 173 (871)
...++....+.+...++.++.++.+...++.........-......|.|+.++|- +.+ .+++|..+..+.+.-..
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 3446666666666788888888888777777653222222233567999999974 344 78888887776555432
Q ss_pred CCCCeEEEe-----cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC--CCceEEEe--cCcccCeEEEEEcCCCCEE
Q 002881 174 SPDPNFTLD-----AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKSCVQTL--EGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 174 ~~~~~~~~~-----~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~--~~~~~~v~~i~~~p~~~~l 244 (871)
......... .-+..|.-..+-.+ ..+|.++..||.+.-|-+. +++.-..- .-...|++--.|+..+..-
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d--~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~ 644 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGD--IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTA 644 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeecc--ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceE
Confidence 222221111 11222333333222 4489999999998877554 33322111 1123455555565554433
Q ss_pred EEEECCCcEEEEeCCCCeE
Q 002881 245 ITGSEDGTVRIWHATTYRL 263 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~ 263 (871)
+.+.+|.-..+|. .++++
T Consensus 645 vfa~sdrP~viY~-~n~kL 662 (1096)
T KOG1897|consen 645 VFALSDRPTVIYS-SNGKL 662 (1096)
T ss_pred EEEeCCCCEEEEe-cCCcE
Confidence 3333455555665 33443
No 405
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.35 E-value=0.97 Score=48.23 Aligned_cols=85 Identities=9% Similarity=0.085 Sum_probs=55.6
Q ss_pred CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCC-eeEEEEeecCC----------------cCEEE
Q 002881 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG-VNCVDYFTGGD----------------KPYLI 203 (871)
Q Consensus 141 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~----------------~~~l~ 203 (871)
....+.+++.+| ++++.++...-|.|.++|+.++..++.+++.... +.-+.....+. .-+++
T Consensus 306 ~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 306 SKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 344578899999 6888888888899999999988877766654432 11111111111 11233
Q ss_pred EEeCCCeEEEEECCCCceEEEec
Q 002881 204 TGSDDHTAKVWDYQTKSCVQTLE 226 (871)
Q Consensus 204 ~~~~dg~i~v~d~~~~~~~~~~~ 226 (871)
-+-.-|.|-||++++|..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 34557889999998887776654
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.28 E-value=1.7 Score=50.80 Aligned_cols=230 Identities=10% Similarity=0.067 Sum_probs=122.9
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCC--------CEEEEEEeC----------------CCCEEEEEeCCCeEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL--------PVRSAKFVA----------------RKQWVVAGADDMFIR 82 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~~~~~dg~i~ 82 (871)
+..|.+++.++.|.-.|..+|+.+-.+..... ..+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777889999999999998877664321 122233321 345888999999999
Q ss_pred EEECCCCcEEEEEccCCCCeE-------------EEEEcC--CCCEEEEEEC----------CCeEEEEECCCCceEEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIR-------------CVAVHP--TLPYVLSSSD----------DMLIKLWDWEKGWMCTQI 137 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~-------------~i~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 137 (871)
-.|.+||+.+..+... +.|. .+.-.| .+..+++|+. +|.|+-+|.++++..-..
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999998776421 1110 111112 1345666643 688999999999444333
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCC-cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 138 FEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
..+.... .... + .+.....++.+. ...-+|.+.+.... -.+... ..+..... ........+.|.-.|.
T Consensus 353 ~~g~p~~-~~~~--~-~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~~----pd~~g~~r--~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 353 DPGNPDP-TAPP--A-PGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQT----PDQWGGDR--TPADEKYSSSLVALDA 421 (764)
T ss_pred ecCCCCc-ccCC--C-CCCEeccCCCCccCceEEcCCCCeEEE-eCCCcc----ccccCCcc--ccCcccccceEEEEeC
Confidence 2221111 1000 1 122222122111 22233332221111 001100 01100000 0001122456777888
Q ss_pred CCCceEEEecCcccCeE---------EEEEcC-CC---CEEEEEECCCcEEEEeCCCCeEEEEEe
Q 002881 217 QTKSCVQTLEGHTHNVS---------AVCFHP-EL---PIIITGSEDGTVRIWHATTYRLENTLN 268 (871)
Q Consensus 217 ~~~~~~~~~~~~~~~v~---------~i~~~p-~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (871)
++|+....++...+.++ -+.+.. +| +.++.++.+|.+.++|..+|+.+....
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 88888777654222221 122322 45 388999999999999999999876543
No 407
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.083 Score=55.61 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=101.4
Q ss_pred eCCCCEEE-EEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCCCce-EEE
Q 002881 66 VARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-------YVLSSSDDMLIKLWDWEKGWM-CTQ 136 (871)
Q Consensus 66 ~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~-~~~ 136 (871)
..+.+.|+ ++.....++-.|++.|+.+....-|.+ |.-+.+.|+.+ .-++|-+|..|.-||.+-... ...
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 33445554 444556788889999999999987776 77788888653 234677888999999984322 222
Q ss_pred EeecCC----cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEE
Q 002881 137 IFEGHS----HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (871)
Q Consensus 137 ~~~~~~----~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~ 212 (871)
...+|. ....|.+-. +..++++|+.+|.|++||--.......+.+...+|..+..+.+|+ .+.|+.+..+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGK---wil~Tc~tyLl 495 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGK---WILATCKTYLL 495 (644)
T ss_pred eeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCc---EEEEecccEEE
Confidence 222231 223444433 577999999999999999744444556677888999999999997 44455567777
Q ss_pred EEECC
Q 002881 213 VWDYQ 217 (871)
Q Consensus 213 v~d~~ 217 (871)
+.++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 77754
No 408
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.21 E-value=0.036 Score=65.38 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=73.6
Q ss_pred eeeeccCCHHHHHHHHHHcCC--hHHHHHHHHHHHHcCChhhHHHHHHHcCC---------cchhHHHHHhcCCHHHHHH
Q 002881 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAMD---------LSGLLLLYSSLGDAEGISK 715 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 715 (871)
.++.+.|++++|.++.+.+.. ...|..|...+.+.|+++.|.+.|.++.. |..++..+...|+.+..++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 567789999999999998764 45799999999999999999999987742 2244445566777666666
Q ss_pred HHHHHHHcCC------chHHHHHHHHcCCHHHHHHHHHHC
Q 002881 716 LASLAKEQGK------NNVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 716 l~~~~~~~~~------~~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
+-+...+.|- ++.-...|.+.|++++|.++|.++
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5555555442 233345566777777777776544
No 409
>PRK10115 protease 2; Provisional
Probab=96.20 E-value=3.6 Score=48.00 Aligned_cols=194 Identities=7% Similarity=-0.010 Sum_probs=100.8
Q ss_pred CEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC------CeEEEEE
Q 002881 59 PVRSAKFVARKQWVVAGAD-----DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD------MLIKLWD 127 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~iwd 127 (871)
.+..+.|+|||++|+.+.+ ...|++.|+.++..+...-... -..++|+++++.|+.+..+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4777899999999987644 2378899998886432221111 1459999998877665432 3688888
Q ss_pred CCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEEEC---CCcEEEEECC--CCCCeEEEecCCCCeeEEEEeecCCcCE
Q 002881 128 WEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (871)
Q Consensus 128 ~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 201 (871)
+.++. .-..++........-..+.+.++.+++..+. ++.+.+++.. .+.+...+. ....+.. .....++.-+
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHEY-SLDHYQHRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCEE-EEEeCCCEEE
Confidence 88762 2233444333333323344435665555443 3468888853 333222222 2222221 1112233212
Q ss_pred EEEEeC--CCeEEEEECCCCceEEEecCc--ccCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 202 LITGSD--DHTAKVWDYQTKSCVQTLEGH--THNVSAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 202 l~~~~~--dg~i~v~d~~~~~~~~~~~~~--~~~v~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
+.+-.. ...|...++.+......+-.+ ...+..+.++.+ .++++...+|.-+++-
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQ 342 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEE
Confidence 222211 223444454421122233333 236778888743 4566666677655543
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=96.17 E-value=2.1 Score=45.01 Aligned_cols=225 Identities=10% Similarity=0.043 Sum_probs=108.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCcEEEEEc----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~ 131 (871)
..++.++.|.....-+++|. +|.| |.. +.|+.-.... ....++.++.|.++ ..++ ++..|.|..- -+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~-~G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWI-VGQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEE-eCCCceEEEE-CCCC
Confidence 55788999986666676664 4543 332 2232211111 12234677888654 3333 3455544332 2222
Q ss_pred ceEEEEeec--CC-cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE-EecCCCCeeEEEEeecCCcCEEEEEeC
Q 002881 132 WMCTQIFEG--HS-HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 132 ~~~~~~~~~--~~-~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
......... .. .........+ ... ..++..|.|..-+ +.++.-.. .......+..+.+.|++. ++..+.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~--~~~-~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~---~v~~g~ 191 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP--GTA-EMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK---YVAVSS 191 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC--Ccc-eeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe---EEEEeC
Confidence 222221111 11 1122222222 223 3344455543322 22322221 223345678888887654 445555
Q ss_pred CCeEEEE-ECCCCceEEEe-cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec----CCccEEEEEEee
Q 002881 208 DHTAKVW-DYQTKSCVQTL-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMK 281 (871)
Q Consensus 208 dg~i~v~-d~~~~~~~~~~-~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~i~~i~~~~ 281 (871)
.|.+..- + ..++..... ......++++.+.|+++.++++ ..|.+++=....+..-..... ....+.++.+.|
T Consensus 192 ~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~ 269 (334)
T PRK13684 192 RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT 269 (334)
T ss_pred CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC
Confidence 5655432 2 222222222 2345678999999999877765 467765433344433222221 123577888888
Q ss_pred CCCeEEEEEcCCeEEE
Q 002881 282 SSRRIVIGYDEGTIMV 297 (871)
Q Consensus 282 ~~~~l~~g~~dg~i~i 297 (871)
++..++ ++.+|.+..
T Consensus 270 ~~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 270 PGEIWA-GGGNGTLLV 284 (334)
T ss_pred CCCEEE-EcCCCeEEE
Confidence 776554 445665544
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.16 E-value=2.2 Score=45.02 Aligned_cols=192 Identities=14% Similarity=0.146 Sum_probs=95.1
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC----cEEEEEcc---CC----CCeEEEEEcCCCCEEEEEEC------CCeEEEEECC
Q 002881 68 RKQWVVAGA-DDMFIRVYNYNTM----DKVKVFEA---HT----DYIRCVAVHPTLPYVLSSSD------DMLIKLWDWE 129 (871)
Q Consensus 68 ~~~~l~~~~-~dg~i~iw~~~~~----~~~~~~~~---~~----~~i~~i~~~~~~~~l~~~~~------dg~i~iwd~~ 129 (871)
+.++|+..+ .++.|.|.|+.+. +..++++. +. ........-|+|+.++++-. -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6789999998742 34444442 11 12233444578888887632 3568888877
Q ss_pred CCceEEEEeec---CCcceEEEEEecCCCCEEEEEEC--------------------CCcEEEEECCCCCCeEEEecCCC
Q 002881 130 KGWMCTQIFEG---HSHYVMQVTFNPKDTNTFASASL--------------------DRTIKIWNLGSPDPNFTLDAHQK 186 (871)
Q Consensus 130 ~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~ 186 (871)
+. .+...... ....-..+-|.| ..+.+++... ..++.+||+.+.+.++++.-...
T Consensus 166 tf-~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TF-EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cc-cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 65 34433332 233456788889 7788888653 35799999999998888875442
Q ss_pred --CeeEEEEeecCCcCEEEEE-eCCCeEEEEEC-CCCc----eEEEecCc-----------------ccCeEEEEEcCCC
Q 002881 187 --GVNCVDYFTGGDKPYLITG-SDDHTAKVWDY-QTKS----CVQTLEGH-----------------THNVSAVCFHPEL 241 (871)
Q Consensus 187 --~i~~i~~~~~~~~~~l~~~-~~dg~i~v~d~-~~~~----~~~~~~~~-----------------~~~v~~i~~~p~~ 241 (871)
-...+.|..+.+..+=++| .-.++|..|-- ..++ .+..+... ..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 3457788777665443333 33445555533 3332 12222111 2347899999999
Q ss_pred CEEEEEE-CCCcEEEEeCCCC
Q 002881 242 PIIITGS-EDGTVRIWHATTY 261 (871)
Q Consensus 242 ~~l~~~~-~dg~v~iwd~~~~ 261 (871)
++|.++. .+|.|+.||+...
T Consensus 324 rfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SST
T ss_pred CEEEEEcccCCcEEEEecCCC
Confidence 9887665 6899999998753
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.21 Score=57.62 Aligned_cols=184 Identities=12% Similarity=0.092 Sum_probs=111.8
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCC-------c---------EEEEEccC-CCCeEEEEEcCCCCEEEEEE--CCCe
Q 002881 62 SAKFVARKQWVVAGADDMFIRVYNYNTM-------D---------KVKVFEAH-TDYIRCVAVHPTLPYVLSSS--DDML 122 (871)
Q Consensus 62 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~---------~~~~~~~~-~~~i~~i~~~~~~~~l~~~~--~dg~ 122 (871)
.++.++.-..+++++..+.+.|+-..+. . ....+.-| .-+|..+..++|+...++.. .+-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 3455555555666666665555543211 0 11222222 23455666677766554433 3447
Q ss_pred EEEEECCCCceE----EEEeec------CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEE
Q 002881 123 IKLWDWEKGWMC----TQIFEG------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVD 192 (871)
Q Consensus 123 i~iwd~~~~~~~----~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~ 192 (871)
|..||+++-... ...+.. ......++.|+|.-....+++..|+.|++..+........--......++++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~ 205 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVL 205 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEE
Confidence 889998753211 111111 2234567889996667788888999999988754433222223345678999
Q ss_pred EeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc----ccCeEEEEEcCCCCEEEEEE
Q 002881 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH----THNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~v~~i~~~p~~~~l~~~~ 248 (871)
|+|.|. -+++|...|++.-|... .+....+... ...|.+++|-....++++-+
T Consensus 206 WSprGK--Ql~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 206 WSPRGK--QLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eccccc--eeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 999998 49999999999998764 4443333321 46799999998777766543
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.15 E-value=2.2 Score=44.90 Aligned_cols=234 Identities=13% Similarity=0.150 Sum_probs=118.3
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCce---eEEee----ecCCCEEEEEEeCC---CCEEEEEeC-C-------
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM---AKSFE----VTELPVRSAKFVAR---KQWVVAGAD-D------- 78 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~---~~~~~----~~~~~v~~~~~~~~---~~~l~~~~~-d------- 78 (871)
..++|+|.|||.. +++...|.|.+++ ..+.. +..+. ........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l-~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRL-LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCE-EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcE-EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4689999999875 5556799999999 55544 22221 13456899999994 344444332 1
Q ss_pred -CeEEEEECCCC-------cEE-EEEcc---CCCCeEEEEEcCCCCEEEEEECC-------------CeEEEEECCCCc-
Q 002881 79 -MFIRVYNYNTM-------DKV-KVFEA---HTDYIRCVAVHPTLPYVLSSSDD-------------MLIKLWDWEKGW- 132 (871)
Q Consensus 79 -g~i~iw~~~~~-------~~~-~~~~~---~~~~i~~i~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~- 132 (871)
..|.-|....+ +.+ ..... ....-..|.|.|+|.+.++.++. |.|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444554433 111 11122 23345779999999655554432 333333333210
Q ss_pred -----------eEEEEeecCCcceEEEEEecCCCCEEEEE-ECCCcEEEEECCCC-------------------------
Q 002881 133 -----------MCTQIFEGHSHYVMQVTFNPKDTNTFASA-SLDRTIKIWNLGSP------------------------- 175 (871)
Q Consensus 133 -----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i~d~~~~------------------------- 175 (871)
.....-.++.. ...++|+|..+.++++= +.++.=.|.-+..+
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00011122332 46899999424444432 12222222222111
Q ss_pred ----CCeEEEecCCCCeeEEEEeecC-----CcCEEEEEeCCCeEEEEECCCCceEE---E-ecCcccCeEEEEEcCCCC
Q 002881 176 ----DPNFTLDAHQKGVNCVDYFTGG-----DKPYLITGSDDHTAKVWDYQTKSCVQ---T-LEGHTHNVSAVCFHPELP 242 (871)
Q Consensus 176 ----~~~~~~~~~~~~i~~i~~~~~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~---~-~~~~~~~v~~i~~~p~~~ 242 (871)
.+...+..| ..+..+.+.... ++.++++....+.|....+..+..+. . +......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 122333333 445566666443 22256666666788888876543322 1 233444799999999998
Q ss_pred EEEEEECCCcEE
Q 002881 243 IIITGSEDGTVR 254 (871)
Q Consensus 243 ~l~~~~~dg~v~ 254 (871)
+.++...+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888877788774
No 414
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.15 E-value=0.017 Score=54.15 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCEEEEEEcCCeEEEEeCCCC-ceeEEeeecCCCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCC-CCeE
Q 002881 27 EPWILASLYSGTVCIWNYQSQ-TMAKSFEVTELPVRSAK-FVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIR 103 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~ 103 (871)
+..+++|+.+|.|.+|+.... .....+..-..+|.++- --.++.+..+++.||.|+.|+..-.+.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 346889999999999997621 11111222222333322 22345578889999999999999888888888887 5666
Q ss_pred EEEEcCCCCEEEEE--ECCCeEEEEECCC
Q 002881 104 CVAVHPTLPYVLSS--SDDMLIKLWDWEK 130 (871)
Q Consensus 104 ~i~~~~~~~~l~~~--~~dg~i~iwd~~~ 130 (871)
....+..+.++.++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666666666666 6677777777654
No 415
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.14 E-value=1.6 Score=43.36 Aligned_cols=221 Identities=13% Similarity=0.165 Sum_probs=127.7
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECC------CC-cEEEEEcc-----CCCCeEEEEEcCCCCE------------EE
Q 002881 60 VRSAKFVARKQWVVAGADDMFIRVYNYN------TM-DKVKVFEA-----HTDYIRCVAVHPTLPY------------VL 115 (871)
Q Consensus 60 v~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~-~~~~~~~~-----~~~~i~~i~~~~~~~~------------l~ 115 (871)
-..++++|.+.+-++....+...+||.+ .. ..+.++.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999888877778899999986 11 22333331 2346788888864433 67
Q ss_pred EEECCCeEEEEECCCCce----EEEEee-cCCcce-EEEEEecC-CCCEEE-EEECCCcEEEEECCCCCCeE--EE----
Q 002881 116 SSSDDMLIKLWDWEKGWM----CTQIFE-GHSHYV-MQVTFNPK-DTNTFA-SASLDRTIKIWNLGSPDPNF--TL---- 181 (871)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~----~~~~~~-~~~~~v-~~~~~~p~-~~~~l~-~~~~dg~i~i~d~~~~~~~~--~~---- 181 (871)
.+++||+|.-|...-+.. ....+. .....| ..+++.+. ..+.|. +--..++|.+||-.-..... .+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 789999999998643311 111221 112223 23444321 234444 44457899999864222110 01
Q ss_pred -ecCCCCee--------EEEEeec-CCcCEEEEEeCCCeEEEEECCCCceEEEec--CcccCeEEEEEcC------CCCE
Q 002881 182 -DAHQKGVN--------CVDYFTG-GDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHP------ELPI 243 (871)
Q Consensus 182 -~~~~~~i~--------~i~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~i~~~p------~~~~ 243 (871)
.....+.+ -+.|... .....=+.|..-|.|-+||+. +..++.+. +.-...+.++..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 00011111 1111110 000012334445789999976 77777763 3344567787766 4567
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEEecCCc------cEEEEEEee
Q 002881 244 IITGSEDGTVRIWHATTYRLENTLNYGLE------RVWAIGYMK 281 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~i~~i~~~~ 281 (871)
|+----||+|..||..+++.+..+....+ .+|.++|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77666799999999999998877765543 467777754
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.12 E-value=0.02 Score=39.40 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT 48 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~ 48 (871)
...+|.+++|+|...+||.+..+|.|.+|.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999998 443
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.02 E-value=1.5 Score=43.90 Aligned_cols=145 Identities=10% Similarity=-0.044 Sum_probs=87.7
Q ss_pred CEEEEEEcCCCCEEEEEE---cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCcEE
Q 002881 17 RVKSVDLHPSEPWILASL---YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKV 92 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~~ 92 (871)
.+.+.+++++++.+|... ....+.++.. +....... ....++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999887765 2334555553 33333222 223678889999987766666666666664 2333222
Q ss_pred -EEEcc--CCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCC--c---eE---EEEeecCCcceEEEEEecCCCCEE
Q 002881 93 -KVFEA--HTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEKG--W---MC---TQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 93 -~~~~~--~~~~i~~i~~~~~~~~l~~~~---~dg~i~iwd~~~~--~---~~---~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
..... -...|+.+.+||||..++... .++.|.+--+... . .. ..........+..+.|.+ +..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEE
Confidence 12221 112899999999999888665 3477777654321 0 11 112222345789999998 55555
Q ss_pred EEEECCC
Q 002881 159 ASASLDR 165 (871)
Q Consensus 159 ~~~~~dg 165 (871)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 5554433
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.98 E-value=0.022 Score=39.20 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
..+|.+++|+|..+.||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
No 419
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.91 E-value=1 Score=48.34 Aligned_cols=272 Identities=8% Similarity=-0.029 Sum_probs=140.6
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 93 (871)
..+|..+-+...|. +.+|+.+| +..||..+++..+.-.... .+|..+.-+-.| .+.+|+.+| |.+.+....+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 34678888888775 67777777 6678877877766544332 566666555555 478888887 5566655422211
Q ss_pred EEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCC--cceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 94 VFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 94 ~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
... -..+.|..+.-..+| .+-.|+..|..+. ..............|. +.|.++..+ ....+-+++.+|.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D--~dGsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLD--TDGSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeec--cCCCEeeeccCceEEEe
Confidence 111 123445544444444 5677777765433 3232212222222222 223334333 34557777777665554
Q ss_pred ECCCCCCeEEEecCCCC-eeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-CcccCeEEEEEcCCCCEEEEEE
Q 002881 171 NLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 171 d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
+-. ......+...++. +...+..|.....-+-...+.|.+.+-+-.++..+.+.. .....|+.+++..++ .+-.|+
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe
Confidence 331 1111112222111 111222221111112233333445555555565554432 223567777777754 566666
Q ss_pred CCCcEEEEeCCC-CeEEEEEe-cCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 249 EDGTVRIWHATT-YRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 249 ~dg~v~iwd~~~-~~~~~~~~-~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
...-+..|+.++ +-...... ...++|..+.-.|+++ |-+|+.+|.+..
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 664566676665 22222222 2345777888888887 888998888765
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.79 E-value=1.8 Score=41.01 Aligned_cols=205 Identities=11% Similarity=0.128 Sum_probs=111.6
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEE-EccCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCc-eEEEE-eec---
Q 002881 70 QWVVAGADDMFIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKGW-MCTQI-FEG--- 140 (871)
Q Consensus 70 ~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~i~~~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~--- 140 (871)
.++.+--..|.|.-||..+.+..+. +.+.. ..++.+--.+ .+.+.++..-.|.=||..... ....+ +.-
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3344444456777788876544322 22221 2333332222 233334443344445532211 11111 110
Q ss_pred -CCcceEEEEEecCCCCEEEEEEC----------CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC
Q 002881 141 -HSHYVMQVTFNPKDTNTFASASL----------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 141 -~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
...+...-..+| +++++ .|.. .|.++.|-... + +..+...-.--+.++|+.+.+. +.++-+.+-
T Consensus 106 ~kknR~NDgkvdP-~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~IsNgl~Wd~d~K~-fY~iDsln~ 180 (310)
T KOG4499|consen 106 RKKNRLNDGKVDP-DGRYY-GGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGISNGLAWDSDAKK-FYYIDSLNY 180 (310)
T ss_pred HHhcccccCccCC-CCcee-eeeeccccccccccccEEEEeccCC-C-ceeeehhccCCccccccccCcE-EEEEccCce
Confidence 123455566677 66663 3332 24455554322 1 2222222233367888866554 666777777
Q ss_pred eEEEEE--CCCCc-----eEEEecC---ccc-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEE
Q 002881 210 TAKVWD--YQTKS-----CVQTLEG---HTH-NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (871)
Q Consensus 210 ~i~v~d--~~~~~-----~~~~~~~---~~~-~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~ 278 (871)
.|.-|| ..+|. .+..++. ... ..-.++...+|.+.+++-..|+|...|..+|+.+.++..+..++++++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 887787 44443 2333322 111 123455677888888888889999999999999999999999999999
Q ss_pred Eee
Q 002881 279 YMK 281 (871)
Q Consensus 279 ~~~ 281 (871)
|.-
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 964
No 421
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.75 E-value=0.088 Score=62.14 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=94.5
Q ss_pred ccCHHHHhhhCCCCCcch---hHHHHHHHHhCCChhhhhhcccC-------cccc-----eeeeeccCCHHHHHHHHHHc
Q 002881 601 RGDLERANEILPSIPKEH---HNSVARFLESRGMIEEAIEVATD-------PDYR-----FELAIQLGRLEVAQEIATEV 665 (871)
Q Consensus 601 ~~~~~~a~~~l~~i~~~~---~~~~~~~~~~~~~~~~a~~~~~~-------~~~~-----f~~~l~l~~~~~A~~~~~~~ 665 (871)
.|++++|.+++..+..+. .+.++.-+.+.|..++|+++... |+.. +......|++++|+++.+.+
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 577777777666554432 35666667777777777765433 2211 23455677888888887765
Q ss_pred CC-------hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH---
Q 002881 666 QS-------ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM--- 735 (871)
Q Consensus 666 ~~-------~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 735 (871)
.. ...|..+.+.+.+.|+++.|.+.|.++.--+. ...+..+.......|+...|..++..
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~----------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT----------VNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 32 23677788888888888888887776653221 11233333344444445444444333
Q ss_pred -----cCCHHHHHHHHHHCCCchHHHHHHHhcC
Q 002881 736 -----LGKLEDCLQLLVESNRIPEAALMARSYL 763 (871)
Q Consensus 736 -----~g~~~~a~~l~~~~~~~~~A~~la~~~~ 763 (871)
.+.+.-.+++|.+.|+|++|.++.+...
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2346777888999999999988777553
No 422
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.66 E-value=3.6 Score=43.47 Aligned_cols=211 Identities=15% Similarity=0.240 Sum_probs=93.8
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCC----CeEEEec---CC----CCeeEEEEeecCCcCEEEEEeC------CCeEEEEE
Q 002881 154 DTNTFASAS-LDRTIKIWNLGSPD----PNFTLDA---HQ----KGVNCVDYFTGGDKPYLITGSD------DHTAKVWD 215 (871)
Q Consensus 154 ~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~---~~----~~i~~i~~~~~~~~~~l~~~~~------dg~i~v~d 215 (871)
..++|++.+ .++.|.|+|+.+.. ..+.++. +. .....+..-|+|+ +++++-. -|-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~--imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR--IMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc--EEEEeccCCCCCCCCcEEEEc
Confidence 456676666 67899999987432 2233332 11 1223333445554 5665422 25688888
Q ss_pred CCCCceEEEecCccc---CeEEEEEcCCCCEEEEEEC--------------------CCcEEEEeCCCCeEEEEEecCCc
Q 002881 216 YQTKSCVQTLEGHTH---NVSAVCFHPELPIIITGSE--------------------DGTVRIWHATTYRLENTLNYGLE 272 (871)
Q Consensus 216 ~~~~~~~~~~~~~~~---~v~~i~~~p~~~~l~~~~~--------------------dg~v~iwd~~~~~~~~~~~~~~~ 272 (871)
-.+............ --..+.|.|..+.+++... ..++.+||+.+.+.++++.....
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 777666665543222 2456788998888887642 34699999999999999987754
Q ss_pred c--EEEEEEee--CCCeEEEEEc-CCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeee
Q 002881 273 R--VWAIGYMK--SSRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVK 347 (871)
Q Consensus 273 ~--i~~i~~~~--~~~~l~~g~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (871)
. +..+.|.. +..+-.+|+. .++|..|-. +.++. |... .++.+.... .++-.++-.++
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k--------~~~g~--W~a~---kVi~ip~~~-----v~~~~lp~ml~ 305 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK--------DDDGE--WAAE---KVIDIPAKK-----VEGWILPEMLK 305 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE---------ETTE--EEEE---EEEEE--EE-------SS---GGGG
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEE--------cCCCC--eeee---EEEECCCcc-----cCccccccccc
Confidence 3 44555544 4555444443 222222210 01222 2221 122221111 01122222222
Q ss_pred ecCccccCCceEEECCCCCEEEEEc--CCcEEEEEeecc
Q 002881 348 ELGTCDLYPQSLKHNPNGRFVVVCG--DGEYIIYTALAW 384 (871)
Q Consensus 348 ~~~~~~~~~~~~~~s~~g~~lav~~--~~~~~i~~~~~~ 384 (871)
.++....-++.|.+|.|.++|-+++ .|.++.|++...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 3333345678999999999998887 899999988653
No 423
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.53 E-value=0.068 Score=62.05 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCChhhhhhcc-----cCcccc---e---eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCC
Q 002881 620 NSVARFLESRGMIEEAIEVA-----TDPDYR---F---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (871)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~-----~~~~~~---f---~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~ 683 (871)
..+..+....|..++|+... .+|... + .++..+|++++|.+.++.. +++..|..+|..+...|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34445556677777776543 244322 1 4456889999999887643 457899999999999999
Q ss_pred hhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHHHHHHHHH
Q 002881 684 LEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 684 ~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
++.|+++|.++-+.. .+..++...|+.+......+.+...... ..-+.++...|++++|++.|.+
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999885432 1223444455554444433333222111 1223445555666666655543
No 424
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.52 E-value=0.021 Score=58.81 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=39.5
Q ss_pred eeeeeccCCHHHHHHHHHHc-------CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 646 FELAIQLGRLEVAQEIATEV-------QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 646 f~~~l~l~~~~~A~~~~~~~-------~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..++...++++++.++.+.. +++..|..+|..+.+.|+.+.|+++|.++-
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667889999988887762 356789999999999999999999999874
No 425
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.50 E-value=0.0045 Score=64.01 Aligned_cols=81 Identities=15% Similarity=-0.036 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
+.|++.+..|....+...|++.|.+.+|- .++--+...-..++.+..-+.+.-..-.||+|.+.+.+
T Consensus 4 ~~~~~~~~~a~~d~~~~~airiyr~leda-------------alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le 70 (615)
T KOG2247|consen 4 KVIPCTLTKAQEDFKCVSAIRIYRRLEDA-------------ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE 70 (615)
T ss_pred cchhhHHHhhhhhccchHHHHHHHHhhhh-------------hccccceeeEecCCCceehhhhhhHHHhhhhhcceecc
Confidence 57999999999999999999966665554 33333333333344443333334445556666666666
Q ss_pred CCCchHHHHHHHhc
Q 002881 749 SNRIPEAALMARSY 762 (871)
Q Consensus 749 ~~~~~~A~~la~~~ 762 (871)
.+.+-+|+.|+++.
T Consensus 71 ~n~tg~aldm~wDk 84 (615)
T KOG2247|consen 71 LNPTGKALDMAWDK 84 (615)
T ss_pred cCCchhHhhhhhcc
Confidence 66666666666665
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=2.3 Score=47.49 Aligned_cols=200 Identities=9% Similarity=0.071 Sum_probs=103.4
Q ss_pred CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE--EeecCCcceEEEEEecCCC
Q 002881 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDT 155 (871)
Q Consensus 78 dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~p~~~ 155 (871)
.-.|+||++. |+.+..+.-....+..+.|+.+. .|++...+|++.+|++-....... .+......|..+.+.. +|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~G 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NG 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-Cc
Confidence 4568888864 66665554444478899999775 577778999999999875422111 1122233355454443 22
Q ss_pred CEEEEEECCCcEEEEECCCCCCeEEEec-CCCCeeEEEE--eecCCcCEEEEEeC--CC-eEEEEECCCCceEEEecCcc
Q 002881 156 NTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDY--FTGGDKPYLITGSD--DH-TAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~--~~~~~~~~l~~~~~--dg-~i~v~d~~~~~~~~~~~~~~ 229 (871)
+++-..+|.+.+-.-.+.....++.. ......+.+| .+++....++..-. .+ .+..-+..+.+ ...+....
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~ 216 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPN 216 (829)
T ss_pred --eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCC
Confidence 33333445554433222212222221 1111222233 22222112211110 00 01111111111 22233334
Q ss_pred cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCC-ccEEEEEEeeCC
Q 002881 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSS 283 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~i~~~~~~ 283 (871)
+.+..+..||+.++|+.-..+|.|.+-+....+....++... .....++|..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 568889999999999999999999999887766665555221 223356666544
No 427
>PRK13684 Ycf48-like protein; Provisional
Probab=95.42 E-value=4.2 Score=42.77 Aligned_cols=268 Identities=8% Similarity=-0.011 Sum_probs=130.6
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEe--e--ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF--E--VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 90 (871)
...+.+|.|.....-+++|. +|.|..=. +.|+.=+.. . ....++.++.|.++ ..+++ +..|.|.. ..+.|+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCCC
Confidence 55789999986666666664 56443322 222211111 1 12335778888654 33444 44554332 222232
Q ss_pred EEEEEc---cCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 91 KVKVFE---AHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 91 ~~~~~~---~~~-~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
.-..+. ... .........+ +. +..++..|.|..-+ +.+..-......-...+..+.+.| ++.+ +..+..|.
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~-~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~-~g~~-v~~g~~G~ 194 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGP-GT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSP-DGKY-VAVSSRGN 194 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECC-Cc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECC-CCeE-EEEeCCce
Confidence 222221 111 1222222333 22 33344555554333 223233333333355688899988 5544 45555665
Q ss_pred EEEEECCCCC-CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC----cccCeEEEEEcCCC
Q 002881 167 IKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPEL 241 (871)
Q Consensus 167 i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~v~~i~~~p~~ 241 (871)
+..-.-..++ -..........++.+.+.+++. .++ .+..|.+.+=+...+..-..... ....+.++.+.|++
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~--~~~-vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN--LWM-LARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC--EEE-EecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 5432111222 1122223456788888888776 444 45567665433344433222221 12357889999987
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEe---cCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 242 PIIITGSEDGTVRIWHATTYRLENTLN---YGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
..+++ +.+|.+.. ....++.-.... .-....+.+.+..+++.+ +.+..|.|.-+
T Consensus 272 ~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~G~il~~ 328 (334)
T PRK13684 272 EIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF-VLGQRGVLLRY 328 (334)
T ss_pred CEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceE-EECCCceEEEe
Confidence 75554 45676553 334444333322 112357778877666554 45566766554
No 428
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.38 E-value=3.4 Score=41.45 Aligned_cols=146 Identities=11% Similarity=0.121 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE-CCCCC
Q 002881 101 YIRCVAVHPTLPYVLSSS---DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN-LGSPD 176 (871)
Q Consensus 101 ~i~~i~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d-~~~~~ 176 (871)
.+...+++++++.++... ....+.++.... .......+ ..+..-.|++ ++...+....+....++. ...++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g--~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG--GSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccC--CccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999999887665 334555555443 33333333 3678889999 566666666666666663 22332
Q ss_pred C-eEEEecC--CCCeeEEEEeecCCcCEEEE-EeCCCeEEEEECC---CC------ceEEEecCcccCeEEEEEcCCCCE
Q 002881 177 P-NFTLDAH--QKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWDYQ---TK------SCVQTLEGHTHNVSAVCFHPELPI 243 (871)
Q Consensus 177 ~-~~~~~~~--~~~i~~i~~~~~~~~~~l~~-~~~dg~i~v~d~~---~~------~~~~~~~~~~~~v~~i~~~p~~~~ 243 (871)
. ....... ...|..+.++|+|..-.+++ ...++.|.+--+. .+ .+..........++.+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 2 2222222 12899999999998622222 1234677766442 23 112222233567899999999987
Q ss_pred EEEEECCC
Q 002881 244 IITGSEDG 251 (871)
Q Consensus 244 l~~~~~dg 251 (871)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 77665443
No 429
>PHA03098 kelch-like protein; Provisional
Probab=95.35 E-value=0.85 Score=51.97 Aligned_cols=146 Identities=10% Similarity=0.046 Sum_probs=69.4
Q ss_pred CCEEEEEEcC------CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE
Q 002881 27 EPWILASLYS------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD-----MFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 27 ~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~ 95 (871)
+..++.|+.+ ..+..||..+++....-.............-++...+.|+.+ ..+..||..+.+....-
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 3445555543 247778877765533211111111111222366777778764 35777887765543221
Q ss_pred cc-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCceEEEEeec-CCcceEEEEEecCCCCEEEEEECCC--
Q 002881 96 EA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTFASASLDR-- 165 (871)
Q Consensus 96 ~~-~~~~i~~i~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg-- 165 (871)
.- +...-.+++ .-++...+.||.+ ..+..||+.++ .....-.. ....-.++... ++.+++.|+.++
T Consensus 375 ~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 450 (534)
T PHA03098 375 PLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN-KWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYID 450 (534)
T ss_pred CcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCC-eeeecCCCCccccCceEEEE--CCEEEEECCccCCC
Confidence 11 111111122 2245666666632 45888998875 22221110 01111122222 456667766432
Q ss_pred ------cEEEEECCCCC
Q 002881 166 ------TIKIWNLGSPD 176 (871)
Q Consensus 166 ------~i~i~d~~~~~ 176 (871)
.+.+||..+.+
T Consensus 451 ~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 451 NIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCcccceEEEecCCCCc
Confidence 37888887654
No 430
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.34 E-value=0.1 Score=58.71 Aligned_cols=103 Identities=24% Similarity=0.207 Sum_probs=80.6
Q ss_pred cCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 002881 652 LGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKN 726 (871)
Q Consensus 652 l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~ 726 (871)
-|++++|.+++.++ ..+..|..||+.+.++|+++.|..+... -.+...+|.+++..+++.+.+.|.+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll--------AAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL--------AAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH--------HHhcCCCChHHHHHHHHHHHhcccH
Confidence 48888888888764 4467899999999999999999885543 3455578888999999999999999
Q ss_pred hHHHHHHHHc----C----CHHHHHHHHHHCCCchHHHHHHHhc
Q 002881 727 NVAFLCLFML----G----KLEDCLQLLVESNRIPEAALMARSY 762 (871)
Q Consensus 727 ~~a~~~~~~~----g----~~~~a~~l~~~~~~~~~A~~la~~~ 762 (871)
++|..||-.. + -+-+-..||.++|...+|++-.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 9999887653 1 1567778899999999998655544
No 431
>PLN03077 Protein ECB2; Provisional
Probab=95.29 E-value=0.13 Score=62.37 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=75.9
Q ss_pred eeeeccCCHHHHHHHHHHcCCh--HHHHHHHHHHHHcCChhhHHHHHHHcCC---------cchhHHHHHhcCCHHHHHH
Q 002881 647 ELAIQLGRLEVAQEIATEVQSE--SKWKQLGELAMSTGKLEMAEGCMKQAMD---------LSGLLLLYSSLGDAEGISK 715 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~~~~--~~w~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 715 (871)
.++.+.|++++|.++.+.+..+ ..|..+...+.+.|+++.|.+.|.++.. +..++..+...|+.+...+
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 5677889999999999887643 4799999999999999999999987632 2344445566777777777
Q ss_pred HHHHHHHcCCc------hHHHHHHHHcCCHHHHHHHHHHCCC
Q 002881 716 LASLAKEQGKN------NVAFLCLFMLGKLEDCLQLLVESNR 751 (871)
Q Consensus 716 l~~~~~~~~~~------~~a~~~~~~~g~~~~a~~l~~~~~~ 751 (871)
+-+.+...|-. +.-...|.+.|++++|.++|.++.+
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 76666665542 2233557778888888887766544
No 432
>PHA03098 kelch-like protein; Provisional
Probab=95.25 E-value=0.95 Score=51.57 Aligned_cols=185 Identities=12% Similarity=0.106 Sum_probs=87.4
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCcEEEEEcc--CCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCce
Q 002881 67 ARKQWVVAGADDM------FIRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWM 133 (871)
Q Consensus 67 ~~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 133 (871)
.++..++.|+.++ .+..||..+.+....-.- .......+. -++...+.||.+ ..+..||..++ .
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES-K 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC-c
Confidence 4556667776532 577888877655322111 111122222 256667777764 35778888765 2
Q ss_pred EEEEee-cCCcceEEEEEecCCCCEEEEEECC------CcEEEEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEE
Q 002881 134 CTQIFE-GHSHYVMQVTFNPKDTNTFASASLD------RTIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLIT 204 (871)
Q Consensus 134 ~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~ 204 (871)
....-. .+...-.+++.. ++.+.+.|+.+ ..+..||..+.+-... .....+ -.++. ..++. +++.
T Consensus 370 W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~-~~~~~--iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPLPISHYGGCAI-YHDGK--IYVI 443 (534)
T ss_pred eeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCCCccccCceEE-EECCE--EEEE
Confidence 222111 111111122222 46677777632 3578888876532211 111111 11222 22332 5566
Q ss_pred EeCC--------CeEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCe
Q 002881 205 GSDD--------HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTYR 262 (871)
Q Consensus 205 ~~~d--------g~i~v~d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~ 262 (871)
|+.+ ..+.+||..+++-... +.........+.+ ++.+++.||.+ +.+.+||..+.+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 6532 2388888876543221 1111111122222 56677777654 357777766544
No 433
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.17 E-value=0.23 Score=60.19 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=24.1
Q ss_pred eeeeccCCHHHHHHHHHHcC------ChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 647 ELAIQLGRLEVAQEIATEVQ------SESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~~------~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.++.+.|++++|.++.+++. +...|..|-..+.+.|+++.|.++|.++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33445555555555554432 2344555555555555555555555444
No 434
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.14 E-value=3.7 Score=40.52 Aligned_cols=183 Identities=11% Similarity=0.021 Sum_probs=113.6
Q ss_pred CeEEEEEcCCCCEEEEEECCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCe
Q 002881 101 YIRCVAVHPTLPYVLSSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178 (871)
Q Consensus 101 ~i~~i~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (871)
....+.|..++.++-+.+.-| .|+.+|+.++...........-.--.++.. ++.+....-.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 456778867777777777665 799999999855444433333333344444 3455555667789999999988877
Q ss_pred EEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc-----cCeEEEEEcCCCCEEEEEECCCcE
Q 002881 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFHPELPIIITGSEDGTV 253 (871)
Q Consensus 179 ~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~l~~~~~dg~v 253 (871)
.++.-. +.-+.++ .+++ .|+.+.....+.++|..+.+....+.... ..+.-+.|. +|.+.|=.=....|
T Consensus 124 ~~~~y~-~EGWGLt--~dg~--~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 124 GTFPYP-GEGWGLT--SDGK--RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEE-S-SS--EEE--ECSS--CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEecC-CcceEEE--cCCC--EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 776543 4445666 3455 46666667899999998887776665432 235556676 45455544455678
Q ss_pred EEEeCCCCeEEEEEecC---------------CccEEEEEEeeCCCeEEEEEc
Q 002881 254 RIWHATTYRLENTLNYG---------------LERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 254 ~iwd~~~~~~~~~~~~~---------------~~~i~~i~~~~~~~~l~~g~~ 291 (871)
...|..+|+....+... .+-...|+|.|..+.+.+.+.
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 88899999887765311 235788999998777766553
No 435
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.18 Score=52.44 Aligned_cols=86 Identities=26% Similarity=0.269 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc------
Q 002881 666 QSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML------ 736 (871)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------ 736 (871)
.++.+|-.||+-+++.++++.|++||.++ +|..+ ..+.+||++-++.++.+.|..+|.+.
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~-----------~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG-----------SALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999986 34433 33566777777777777777776553
Q ss_pred -CC----HHH----HHHHHHHCCCchHHHHHHHhc
Q 002881 737 -GK----LED----CLQLLVESNRIPEAALMARSY 762 (871)
Q Consensus 737 -g~----~~~----a~~l~~~~~~~~~A~~la~~~ 762 (871)
|. ..+ -+..|.+++.|++|-.+|...
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 21 111 234566777777777655543
No 436
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.84 E-value=0.55 Score=50.80 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=41.8
Q ss_pred eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..+-+.|.+|.|....++. .=+..+.+||.+.-..|++..|+.||.++-
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 6778999999999888753 226788999999999999999999999874
No 437
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.82 E-value=0.15 Score=61.67 Aligned_cols=148 Identities=11% Similarity=0.139 Sum_probs=86.8
Q ss_pred ccCHHHHhhhCCCCC-------cchhHHHHHHHHhCCChhhhhhcccCc-------ccc-----eeeeeccCCHHHHHHH
Q 002881 601 RGDLERANEILPSIP-------KEHHNSVARFLESRGMIEEAIEVATDP-------DYR-----FELAIQLGRLEVAQEI 661 (871)
Q Consensus 601 ~~~~~~a~~~l~~i~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~~~-----f~~~l~l~~~~~A~~~ 661 (871)
.++++.|..++..+. ....+.++..+.+.|..+.|..+.... +.. ...+.+.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 566666544443221 122356666667777777776554322 111 2456677888888877
Q ss_pred HHHc------CChHHHHHHHHHHHHcCChhhHHHHHHHcCC-----------cchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 662 ATEV------QSESKWKQLGELAMSTGKLEMAEGCMKQAMD-----------LSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 662 ~~~~------~~~~~w~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
.+.+ .+...|..|-..+.+.|+++.|.+.|.++.. |..++..|...|+.+...++-+.....|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 7665 3355777888888888888888888776632 2234445666777666666655555444
Q ss_pred C------chHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 K------NNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~------~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
- ++.....|.+.|++++|.++|.+
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 23334445556666666665543
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.71 E-value=9.1 Score=44.51 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=24.6
Q ss_pred ccCeEEEEEcCCC---CEEEEEECCCcEEEEeCCCC
Q 002881 229 THNVSAVCFHPEL---PIIITGSEDGTVRIWHATTY 261 (871)
Q Consensus 229 ~~~v~~i~~~p~~---~~l~~~~~dg~v~iwd~~~~ 261 (871)
...|..+.|||.+ ..|++-.+|+++|+||+...
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 3457778888864 67777788888888888653
No 439
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.62 E-value=0.25 Score=50.64 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHH----HHHHHHHHHHHcCCchHH
Q 002881 654 RLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAE----GISKLASLAKEQGKNNVA 729 (871)
Q Consensus 654 ~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~----~~~~l~~~~~~~~~~~~a 729 (871)
++++|.. ++.+.|..+-..++++.|.+||.++.+ +|...++.. .+...+.+.... +...|
T Consensus 30 ~~e~Aa~---------~y~~Aa~~fk~~~~~~~A~~ay~kAa~------~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 30 DYEEAAD---------LYEKAANCFKLAKDWEKAAEAYEKAAD------CYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHH---------HHHHHHHHHHHTT-CHHHHHHHHHHHH------HHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CHHHHHH---------HHHHHHHHHHHHhccchhHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 6677666 556788888888888888888887753 333333322 122333333222 44444
Q ss_pred HHHHHHcCCHHHHHHHHHHCCCchHHH----HHHHhcCCc--hHHHHHHHHHHHhh
Q 002881 730 FLCLFMLGKLEDCLQLLVESNRIPEAA----LMARSYLPS--KVSEIVAIWRKDLQ 779 (871)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~~~~~~~A~----~la~~~~~~--~~~~~~~~~~~~L~ 779 (871)
..+ +++|+++|.+.|++..|+ .+++-+... ..+..++.|.+.+.
T Consensus 94 i~~------~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 94 IEC------YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHH------HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333 367777777777777775 344445443 55666666666553
No 440
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.36 Score=55.85 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=86.4
Q ss_pred eEEEEEecCCCCEEE--EEECCCcEEEEECCCCCCeE-----EE------ecCCCCeeEEEEeecCCcCEEEEEeCCCeE
Q 002881 145 VMQVTFNPKDTNTFA--SASLDRTIKIWNLGSPDPNF-----TL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (871)
Q Consensus 145 v~~~~~~p~~~~~l~--~~~~dg~i~i~d~~~~~~~~-----~~------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i 211 (871)
+..+...+ |....+ ..+.+-.|..||+++..... .+ .....-..++.|.|.-.. ..++...|+.|
T Consensus 103 i~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~l~dlsl 180 (1405)
T KOG3630|consen 103 IVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVDLSDLSL 180 (1405)
T ss_pred ceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhhccccch
Confidence 44444444 433322 23333468889987532111 11 112234567889887654 46777788999
Q ss_pred EEEECCCCce-EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec----CCccEEEEEEeeCCCeE
Q 002881 212 KVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRRI 286 (871)
Q Consensus 212 ~v~d~~~~~~-~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l 286 (871)
++..+.-... +..+ ......++++|+|.|+.++.|-..|++.-|... ++....+.. ...+|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 8887653222 2222 245568999999999999999999999988743 443333322 13689999998776665
Q ss_pred EE
Q 002881 287 VI 288 (871)
Q Consensus 287 ~~ 288 (871)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 54
No 441
>PHA02790 Kelch-like protein; Provisional
Probab=94.41 E-value=2.1 Score=47.75 Aligned_cols=143 Identities=9% Similarity=-0.062 Sum_probs=67.9
Q ss_pred CCEEEEEEcC-----CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCcEEEEEccCC
Q 002881 27 EPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDKVKVFEAHT 99 (871)
Q Consensus 27 ~~~la~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~ 99 (871)
+..+++|+.+ ..+..||..+++....-...........-.-++...++|+.+ ..+..|+..+++....-.-..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 3445566643 247778877765433221111111111123467777777753 357778876554332211111
Q ss_pred CCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCceEEEE--eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 100 DYIRCVAVHPTLPYVLSSSDDM---LIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 100 ~~i~~i~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
..-......-+|...++||.++ .+..||.+++ ..... +.........+.+ ++.+.+.| |.+.+||..+
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~~~---~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYKSCALVF---GRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCccccceEEEE---CCEEEEEC---CceEEecCCC
Confidence 1111111222566667777543 4778888765 22221 1111111112222 45666665 4577888876
Q ss_pred CC
Q 002881 175 PD 176 (871)
Q Consensus 175 ~~ 176 (871)
++
T Consensus 425 ~~ 426 (480)
T PHA02790 425 NT 426 (480)
T ss_pred Cc
Confidence 54
No 442
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.036 Score=56.55 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----hhHHHH-------HhcCCHHH-HHHHHHHHHHc----CCchHHHH
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----GLLLLY-------SSLGDAEG-ISKLASLAKEQ----GKNNVAFL 731 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----~l~~l~-------~~~~~~~~-~~~l~~~~~~~----~~~~~a~~ 731 (871)
..|+.-|..+-++|++..|.+||..+-..+ -+..|| ..+|.... +...-+.+... .-..+++.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 479999999999999999999999875432 222333 22333211 11111111111 11456778
Q ss_pred HHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHHhhhhC--h-------hhhh---hcCCCccCCCCc
Q 002881 732 CLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--P-------KAAE---SLADPEEYSNLF 799 (871)
Q Consensus 732 ~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~~~~~~~~~~~~L~~~~--~-------~~a~---~l~~~~~~~~~~ 799 (871)
|++.++++++|++-|.++-+.+.-.+.+|++...+...=..+|+.|....+ + +.|- +|. -+|..-
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~---~Hpd~~ 406 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALV---HHPDKN 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHH---hCCCcC
Confidence 888899999999998887777766667776654322222234555543221 0 1111 111 111111
Q ss_pred ccHHHHHHHhHHHhhccCCCCCCccccc
Q 002881 800 DDWQVALAVESKAAATRGVHPPAEDYVN 827 (871)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 827 (871)
. ...+|+|..+++.-++|....++.+
T Consensus 407 a--gsq~eaE~kFkevgeAy~il~d~~k 432 (486)
T KOG0550|consen 407 A--GSQKEAEAKFKEVGEAYTILSDPMK 432 (486)
T ss_pred c--chhHHHHHHHHHHHHHHHHhcCHHH
Confidence 1 1257899999999999998888854
No 443
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.37 E-value=0.43 Score=55.43 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=22.1
Q ss_pred eeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
++..+|++++|.+.++.. +....|..+|..+...|+++.|+..|.++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555554432 12334444555555555555555555544
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=94.29 E-value=2.2 Score=47.60 Aligned_cols=182 Identities=10% Similarity=0.082 Sum_probs=83.2
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCC-ceEEEEee
Q 002881 68 RKQWVVAGADDM-----FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKG-WMCTQIFE 139 (871)
Q Consensus 68 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~iwd~~~~-~~~~~~~~ 139 (871)
++..+++|+.++ .+..||..+++....-.-...........-++...++||.+ ..+..||..++ |.....+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 455567776542 56678877655433211111111111122356666777753 35788887655 22111111
Q ss_pred cCCcceEEEEEecCCCCEEEEEECCC---cEEEEECCCCCCeEEEecCCCCe--eEEEEeecCCcCEEEEEeCCCeEEEE
Q 002881 140 GHSHYVMQVTFNPKDTNTFASASLDR---TIKIWNLGSPDPNFTLDAHQKGV--NCVDYFTGGDKPYLITGSDDHTAKVW 214 (871)
Q Consensus 140 ~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~~l~~~~~dg~i~v~ 214 (871)
..... .+++.. ++.+.+.|+.++ .+..||.++.+-... .....+. .+++ ..++. +.+.| |.+.+|
T Consensus 351 ~~r~~-~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~-~~~~~--IYv~G---G~~e~y 420 (480)
T PHA02790 351 KPRCN-PAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCAL-VFGRR--LFLVG---RNAEFY 420 (480)
T ss_pred CCCcc-cEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccceEE-EECCE--EEEEC---CceEEe
Confidence 11111 122222 567778877654 467788765532211 1111111 1221 22332 44555 357788
Q ss_pred ECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 002881 215 DYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTY 261 (871)
Q Consensus 215 d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~ 261 (871)
|..+++-... +....... +++. -++.+.++||.+ ..+..||..+.
T Consensus 421 dp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 421 CESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 8876543221 11111122 2222 255677777754 23555555543
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.11 E-value=14 Score=43.46 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=70.7
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeEEEecCCCC--------eeEEEEeec--------------CCcCEEEEEeCCCeEE
Q 002881 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG--------VNCVDYFTG--------------GDKPYLITGSDDHTAK 212 (871)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~~--------------~~~~~l~~~~~dg~i~ 212 (871)
+..+++++.++.|.-.|..+++.+.++...... ...+.+... .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446666777788888888887776665432210 122333221 1122588888999999
Q ss_pred EEECCCCceEEEecCcccCe-------------EEEEEcC--CCCEEEEEEC----------CCcEEEEeCCCCeEEEEE
Q 002881 213 VWDYQTKSCVQTLEGHTHNV-------------SAVCFHP--ELPIIITGSE----------DGTVRIWHATTYRLENTL 267 (871)
Q Consensus 213 v~d~~~~~~~~~~~~~~~~v-------------~~i~~~p--~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~ 267 (871)
-.|.++|+.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|..+|++...+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 1111 0111122 1235666643 688999999999998877
Q ss_pred ec
Q 002881 268 NY 269 (871)
Q Consensus 268 ~~ 269 (871)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 53
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.93 E-value=6.2 Score=45.81 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=56.2
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 96 (871)
.|..|.++|+|.+||..|..|.+.+.=.........+.+....|.|=.+.-+.. ++. .
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~-~~~---------------------~ 143 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDER-FFT---------------------S 143 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechh-hcc---------------------C
Confidence 688999999999999988776544443222111122222222333322211111 110 1
Q ss_pred cCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCceEEEE
Q 002881 97 AHTDYIRCVAVHPT---LPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (871)
Q Consensus 97 ~~~~~i~~i~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (871)
.+...|..+.|+|. +..|++=+.|+.+++||+.......++
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEE
Confidence 23445777888875 467888888888888888754333333
No 447
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.93 E-value=0.17 Score=54.55 Aligned_cols=77 Identities=26% Similarity=0.332 Sum_probs=43.7
Q ss_pred HHHHHHHhCCChhhhhhccc-----Ccccc----e--eeeeccCCHHHHHHHHHHcCC-----hHHHHHHHHHHHHcCCh
Q 002881 621 SVARFLESRGMIEEAIEVAT-----DPDYR----F--ELAIQLGRLEVAQEIATEVQS-----ESKWKQLGELAMSTGKL 684 (871)
Q Consensus 621 ~~~~~~~~~~~~~~a~~~~~-----~~~~~----f--~~~l~l~~~~~A~~~~~~~~~-----~~~w~~la~~al~~~~~ 684 (871)
+.+.-+...|..+.|.++.. +|+.. + .+.-..|++++|..+..+.-. .-.|..||-....+|++
T Consensus 155 nla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 155 NLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred hHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH
Confidence 44455555666655544322 22111 0 334466778888777654211 22577777777777777
Q ss_pred hhHHHHHHHcCCc
Q 002881 685 EMAEGCMKQAMDL 697 (871)
Q Consensus 685 ~~A~~~y~~~~d~ 697 (871)
-.|+..|.++--+
T Consensus 235 ~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 235 WLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHHHHhhcC
Confidence 7777777766533
No 448
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.89 E-value=0.65 Score=41.69 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=57.3
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQ 723 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~ 723 (871)
..+.|++++|.++.+.+ ....-|-.||..+-..|+++.|+.||.++.-++ ..|+.-
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--------~ddp~~----------- 105 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--------IDAPQA----------- 105 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCchH-----------
Confidence 34778888888877653 346789999999999999999999999876332 122222
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHH
Q 002881 724 GKNNVAFLCLFMLGKLEDCLQLLV 747 (871)
Q Consensus 724 ~~~~~a~~~~~~~g~~~~a~~l~~ 747 (871)
..-++.|++.+|+.++|.+-|.
T Consensus 106 --~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 106 --PWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred --HHHHHHHHHHcCCHHHHHHHHH
Confidence 2335667778888888887765
No 449
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.86 E-value=0.48 Score=48.92 Aligned_cols=167 Identities=23% Similarity=0.305 Sum_probs=104.9
Q ss_pred hhHhHHHHHHccCHHHHhhhCCCCCcch---h----H--HHHHHHHh-------CCChhhhhhcccCcccc----eeeee
Q 002881 591 SLIEYKTLVMRGDLERANEILPSIPKEH---H----N--SVARFLES-------RGMIEEAIEVATDPDYR----FELAI 650 (871)
Q Consensus 591 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~---~----~--~~~~~~~~-------~~~~~~a~~~~~~~~~~----f~~~l 650 (871)
.+......+.++|++.|.+++...+... . + .+.+|+.. +.+.+.|+...+-..++ =..+.
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 3334455666899998877765443321 1 1 22355533 33444444433222222 25677
Q ss_pred ccCCHHHHHHHHHHc-CCh----HHHHHHHHHHHHcCChhhHHHHHHHcCCc-----ch---hHHHHHh-----------
Q 002881 651 QLGRLEVAQEIATEV-QSE----SKWKQLGELAMSTGKLEMAEGCMKQAMDL-----SG---LLLLYSS----------- 706 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~-~~~----~~w~~la~~al~~~~~~~A~~~y~~~~d~-----~~---l~~l~~~----------- 706 (871)
..|+++.|.+.+++. .+. +.--.+|-.|...|+++.|.+||.+..-+ +- +.-+|..
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 899999999999864 221 22336788889999999999999876421 11 1112222
Q ss_pred -------cCCHHHHHHHHHHHHHcCCchHHHHHHHHcCC--------HHHHHHHHHHCCCchHHHH
Q 002881 707 -------LGDAEGISKLASLAKEQGKNNVAFLCLFMLGK--------LEDCLQLLVESNRIPEAAL 757 (871)
Q Consensus 707 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~--------~~~a~~l~~~~~~~~~A~~ 757 (871)
-.|+.-+.+|+++-.++|+-.+||.|+...=+ ++=....|+++.-|++|+.
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 35677788999999999999999999644322 3444567788888888873
No 450
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.79 E-value=0.66 Score=54.03 Aligned_cols=48 Identities=6% Similarity=0.005 Sum_probs=31.9
Q ss_pred eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.++...|++++|.+.+++. +++..|..+|..+...|+++.|+.+|.+.
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4456677777777666542 33556777777777777777777777644
No 451
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.65 E-value=1.4 Score=47.86 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=44.4
Q ss_pred HHHHHhCCChhhhhhccc-----Ccccc------eeeeeccCCHHHHHHHHHHcCC----------hHHHHHHHHHHHHc
Q 002881 623 ARFLESRGMIEEAIEVAT-----DPDYR------FELAIQLGRLEVAQEIATEVQS----------ESKWKQLGELAMST 681 (871)
Q Consensus 623 ~~~~~~~~~~~~a~~~~~-----~~~~~------f~~~l~l~~~~~A~~~~~~~~~----------~~~w~~la~~al~~ 681 (871)
+..+...|..+.|+.... +|... ..++...|++++|.+.++.+.. ...|..+|..+...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 444555666666654321 12111 2455677888888877765411 12455677777888
Q ss_pred CChhhHHHHHHHcC
Q 002881 682 GKLEMAEGCMKQAM 695 (871)
Q Consensus 682 ~~~~~A~~~y~~~~ 695 (871)
++++.|+++|.++-
T Consensus 194 ~~~~~A~~~~~~al 207 (389)
T PRK11788 194 GDLDAARALLKKAL 207 (389)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888887764
No 452
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.62 E-value=0.79 Score=43.96 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHH-----cCChHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002881 652 LGRLEVAQEIATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (871)
Q Consensus 652 l~~~~~A~~~~~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (871)
.++.+++....+. -++...|..||..++..++++.|+.+|.++-.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l 102 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL 102 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444555544433 356789999999999999999999999987543
No 453
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.51 E-value=0.81 Score=43.44 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc----hhHH----HHHhcCCHHHHHHHHHHHHH--
Q 002881 653 GRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS----GLLL----LYSSLGDAEGISKLASLAKE-- 722 (871)
Q Consensus 653 ~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~----~l~~----l~~~~~~~~~~~~l~~~~~~-- 722 (871)
.++++|++... +....|-.+|..+...|+.+.|.+.|.++-... .++- ..+..|.++..+..-+.|..
T Consensus 56 ~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P 133 (250)
T COG3063 56 KNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP 133 (250)
T ss_pred HHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence 34444444322 335689999999999999999999999873211 1111 22445566655554444432
Q ss_pred -----cCCchHHHHHHHHcCCHHHHHHHHHHC-----CCchHHHHHHHhcCC
Q 002881 723 -----QGKNNVAFLCLFMLGKLEDCLQLLVES-----NRIPEAALMARSYLP 764 (871)
Q Consensus 723 -----~~~~~~a~~~~~~~g~~~~a~~l~~~~-----~~~~~A~~la~~~~~ 764 (871)
.+-+.-++.|+++.|+++.|.+.|.++ +.+.-.++|++.|..
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 233455788999999999999988754 445555688877654
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=2 Score=51.81 Aligned_cols=222 Identities=12% Similarity=0.142 Sum_probs=109.4
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 94 (871)
.....++|+|....+|.+..+|.|++|-...-+......... ..+..+.|-...........+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 467789999999999999999999999854322221111100 122333333333333444445556666543221111
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCc----------ceEEEEEecCCCCEEEEEECC
Q 002881 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH----------YVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~p~~~~~l~~~~~d 164 (871)
+...+++..-.+--.+ +.| ..+.+++||..-.......+..-.. ....+.|.+. +
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----------~ 179 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVI----------D 179 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeecccc----------c
Confidence 1222333333222223 445 7788888887643211111111110 0111111110 0
Q ss_pred CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l 244 (871)
-.-..+.+... + ..+..+..++.+..+..... +..+...+.+.+|+.........+. +....+++++..+
T Consensus 180 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 249 (993)
T KOG1983|consen 180 LDTVLISLPDA-Y-LGLSLIEYESLQVLYYSPTK---ILIGFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHF 249 (993)
T ss_pred cccceeecccc-c-ccccccccccceeeeecCCC---cceeeeeeeeeehhcccccchhhcc-----cccccCccCCceE
Confidence 00111111110 1 22233444555555554443 5566666777777754332222222 1112227888999
Q ss_pred EEEECCCcEEEEeCCCCeE
Q 002881 245 ITGSEDGTVRIWHATTYRL 263 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~ 263 (871)
+++..||.+.+||...++.
T Consensus 250 v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 250 VSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred EEEEecCCEEeeecCCCce
Confidence 9999999999999988755
No 455
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.29 E-value=0.4 Score=43.31 Aligned_cols=77 Identities=18% Similarity=0.046 Sum_probs=53.3
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
.+.|++++|...++.. .+...|..+|..+...|+++.|+.+|.++-..+ -++++..-.+
T Consensus 35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--------p~~~~a~~~l-------- 98 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--------ASHPEPVYQT-------- 98 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHH--------
Confidence 4778888887777642 456789999999999999999999888864321 2332223222
Q ss_pred CchHHHHHHHHcCCHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLV 747 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~ 747 (871)
+.++...|++++|++.|.
T Consensus 99 -----g~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 99 -----GVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred -----HHHHHHcCCHHHHHHHHH
Confidence 334556788888887765
No 456
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.28 E-value=3.3 Score=44.37 Aligned_cols=140 Identities=10% Similarity=0.037 Sum_probs=76.2
Q ss_pred CCEEEEEEcCCCCEEEEEE-----------cCC-eEEEEeCCC--Cce--eEEeeecCCCEEEEEEeCCCCEEEEEeCCC
Q 002881 16 ERVKSVDLHPSEPWILASL-----------YSG-TVCIWNYQS--QTM--AKSFEVTELPVRSAKFVARKQWVVAGADDM 79 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 79 (871)
.....|+|.++|+.+++-. ..+ .|.+++-.+ |.. ...+-..-...+.+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4578899999999655532 223 788887443 332 23333333456889999998 44444444
Q ss_pred eEEEEECCCC-----cEE---EEEcc----CCCCeEEEEEcCCCCEEEEEECC-------------------CeEEEEEC
Q 002881 80 FIRVYNYNTM-----DKV---KVFEA----HTDYIRCVAVHPTLPYVLSSSDD-------------------MLIKLWDW 128 (871)
Q Consensus 80 ~i~iw~~~~~-----~~~---~~~~~----~~~~i~~i~~~~~~~~l~~~~~d-------------------g~i~iwd~ 128 (871)
..++.+.+.. +.. ..+.. +......++|.|+|.+.++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334344321 211 12222 13447789999999765544421 34555555
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
+++ .....-.++ .....++|+| .++++++
T Consensus 172 dg~-~~e~~a~G~-rnp~Gl~~d~-~G~l~~t 200 (367)
T TIGR02604 172 DGG-KLRVVAHGF-QNPYGHSVDS-WGDVFFC 200 (367)
T ss_pred CCC-eEEEEecCc-CCCccceECC-CCCEEEE
Confidence 544 222222222 2346778887 5666554
No 457
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.11 E-value=3.1 Score=46.81 Aligned_cols=102 Identities=11% Similarity=0.228 Sum_probs=68.3
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeEEEe-cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC-----CC----ceEEE
Q 002881 155 TNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-----TK----SCVQT 224 (871)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~-----~~----~~~~~ 224 (871)
+...++-+...++.|||.+.+.....-. .....|..++|...+++..+++.+-.+.|.+|.-. .. .++..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 3344444445579999998876433222 34788999999988777788888888899988532 11 22333
Q ss_pred e--cCcc-cCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 225 L--EGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 225 ~--~~~~-~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
+ ..++ ++|.+..|.++|.+++.+| +.+.|++-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 3 2333 6899999999996555443 57888873
No 458
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.07 E-value=0.61 Score=52.92 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=52.5
Q ss_pred ccCCHHHHHHHHHH---c--CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 002881 651 QLGRLEVAQEIATE---V--QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGK 725 (871)
Q Consensus 651 ~l~~~~~A~~~~~~---~--~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 725 (871)
++|+.+.|+.+.-. + ++...|..+|++..++|+++.|.-||.|+= ...-.+.+++.+-+.+..+.|+
T Consensus 185 qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI--------~~~p~n~~~~~ers~L~~~~G~ 256 (895)
T KOG2076|consen 185 QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI--------QANPSNWELIYERSSLYQKTGD 256 (895)
T ss_pred HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH--------hcCCcchHHHHHHHHHHHHhCh
Confidence 45555555554432 2 346799999999999999999999999873 2222334455666667777777
Q ss_pred chHHHHHHHH
Q 002881 726 NNVAFLCLFM 735 (871)
Q Consensus 726 ~~~a~~~~~~ 735 (871)
...|...+.+
T Consensus 257 ~~~Am~~f~~ 266 (895)
T KOG2076|consen 257 LKRAMETFLQ 266 (895)
T ss_pred HHHHHHHHHH
Confidence 7777666544
No 459
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.92 E-value=0.26 Score=39.52 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHc----C---ChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 652 LGRLEVAQEIATEV----Q---SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 652 l~~~~~A~~~~~~~----~---~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
.|+++.|..+++++ + +...|-.+|..+.+.|+++.|.+.+.+.+ ... .+ .+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~-~~~--------~~-------~~~~---- 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK-LDP--------SN-------PDIH---- 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT-HHH--------CH-------HHHH----
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC-CCC--------CC-------HHHH----
Confidence 46778888777643 2 34578889999999999999999776611 100 00 0111
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
. ..+.|+..+|++++|++.|.+
T Consensus 62 -~-l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 -Y-LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -H-HHHHHHHHTT-HHHHHHHHHH
T ss_pred -H-HHHHHHHHhCCHHHHHHHHhc
Confidence 1 235778889999999988864
No 460
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.82 E-value=0.097 Score=58.59 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=68.1
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCC--CCceeEEeee-----cCCCEEEEEEeC---CCCEEEEEeCC
Q 002881 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQ--SQTMAKSFEV-----TELPVRSAKFVA---RKQWVVAGADD 78 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~---~~~~l~~~~~d 78 (871)
.+++.++.|-.++|-. +-+.++ -.-|...||+++ .|+....+.. -..++.-+.|.| +..++..+..+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4556777788888744 223333 234678899875 3443333322 233455566655 66777788888
Q ss_pred CeEEEEECCCCcEEEEEccCCCCeEEEEE-----------cCCCCEEEEEECCCeEEEEE
Q 002881 79 MFIRVYNYNTMDKVKVFEAHTDYIRCVAV-----------HPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~~~~~~~i~~i~~-----------~~~~~~l~~~~~dg~i~iwd 127 (871)
+.|++.++++... ..+.+|...++.++| ||||..++.++.||.++.|.
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 9999888765433 344567776666654 45555555555555555544
No 461
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.75 E-value=0.47 Score=59.54 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred HHHccCHHHHhhhCCCC----Ccc--hhHHHHHHHHhCCChhhhhhcccCcc---------------------cceeeee
Q 002881 598 LVMRGDLERANEILPSI----PKE--HHNSVARFLESRGMIEEAIEVATDPD---------------------YRFELAI 650 (871)
Q Consensus 598 ~~~~~~~~~a~~~l~~i----~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~---------------------~~f~~~l 650 (871)
....|+++.|...++.+ +.. .+...+.++...+..++|+....... ...+...
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 44578888876554432 211 12233456677777777765432210 0113356
Q ss_pred ccCCHHHHHHHHHHc-CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHH
Q 002881 651 QLGRLEVAQEIATEV-QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVA 729 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~-~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 729 (871)
..|++++|.++++.. .++..+..||..+++.|+++.|+++|.++-... -.+.+....++++....|+...|
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 789999999999854 345678899999999999999999998764321 22333344444444444444444
Q ss_pred HHHH
Q 002881 730 FLCL 733 (871)
Q Consensus 730 ~~~~ 733 (871)
..++
T Consensus 657 ~~~l 660 (1157)
T PRK11447 657 RAQL 660 (1157)
T ss_pred HHHH
Confidence 4443
No 462
>PLN03077 Protein ECB2; Provisional
Probab=92.74 E-value=0.92 Score=55.17 Aligned_cols=157 Identities=18% Similarity=0.088 Sum_probs=104.8
Q ss_pred HccCHHHHhhhCCCCCcc--hhHHHHHHHHhCCChhhhhhcccC-------cccc-----eeeeeccCCHHHHHHHHHHc
Q 002881 600 MRGDLERANEILPSIPKE--HHNSVARFLESRGMIEEAIEVATD-------PDYR-----FELAIQLGRLEVAQEIATEV 665 (871)
Q Consensus 600 ~~~~~~~a~~~l~~i~~~--~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~-----f~~~l~l~~~~~A~~~~~~~ 665 (871)
..|.+++|...+...+.. +.+.++.-+.+.|..++|+.+... |+.. +..+...|++++|+++.+.+
T Consensus 536 k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 536 RCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 367888887766655322 236677777888999888876432 3322 24456789999999998876
Q ss_pred C-------ChHHHHHHHHHHHHcCChhhHHHHHHHcCC------cchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002881 666 Q-------SESKWKQLGELAMSTGKLEMAEGCMKQAMD------LSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (871)
Q Consensus 666 ~-------~~~~w~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 732 (871)
. +...|..+.+.+.+.|+++.|++.+.++.- +..|+..++..++.+..+.+++.....+-.+.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~---- 691 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV---- 691 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc----
Confidence 4 345789999999999999999999998741 12334445556665555555444433322221
Q ss_pred HHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002881 733 LFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (871)
Q Consensus 733 ~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~ 764 (871)
+-+-....+|.+.|+|++|..+++....
T Consensus 692 ----~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 692 ----GYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred ----chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 2245556788899999999888876643
No 463
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.57 E-value=26 Score=41.18 Aligned_cols=99 Identities=11% Similarity=0.159 Sum_probs=61.9
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEee---ecCCCEEEEEEeCCC------CEEEEEeCCCeEEEEECCCCcEEEEEc--
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFE---VTELPVRSAKFVARK------QWVVAGADDMFIRVYNYNTMDKVKVFE-- 96 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~------~~l~~~~~dg~i~iw~~~~~~~~~~~~-- 96 (871)
..++++.++|.+.-+..........+. .-+..|.|+++.++. ++++.++.|+.++++.+....++..+.
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 456666667776666554333333332 224578899998765 679999999999999998766666653
Q ss_pred cCCCCeEEEEEcC---CC------CEEEEEECCCeEEEE
Q 002881 97 AHTDYIRCVAVHP---TL------PYVLSSSDDMLIKLW 126 (871)
Q Consensus 97 ~~~~~i~~i~~~~---~~------~~l~~~~~dg~i~iw 126 (871)
+-..++.++.+-+ ++ -+|.+|-.+|.+.-.
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 3344444444432 22 256677777765544
No 464
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.56 E-value=2 Score=50.10 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=20.5
Q ss_pred ccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhh----HHHHHHHc
Q 002881 651 QLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEM----AEGCMKQA 694 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~----A~~~y~~~ 694 (871)
.+|++++|.+.++.. +++..+..||..+...|+++. |+.+|.++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 445555555444432 223444455555555555543 44444443
No 465
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.53 E-value=0.82 Score=42.77 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHHcCC----hHHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----------hhHHHHHhcCCHHHHHHH
Q 002881 652 LGRLEVAQEIATEVQS----ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----------GLLLLYSSLGDAEGISKL 716 (871)
Q Consensus 652 l~~~~~A~~~~~~~~~----~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~~~~~~~~~l 716 (871)
+.+++.-++-++..-- ...|..+|+.+.+.|+++.|.+||.++.++- .+.++....+|...+...
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344544554443221 3468899999999999999999999999884 333344456665544433
Q ss_pred H----HHHHHcCCchH-------HHHHHHHcCCHHHHHHHHHHCC
Q 002881 717 A----SLAKEQGKNNV-------AFLCLFMLGKLEDCLQLLVESN 750 (871)
Q Consensus 717 ~----~~~~~~~~~~~-------a~~~~~~~g~~~~a~~l~~~~~ 750 (871)
. ......|+... .+..++..++|.+|.++|+++.
T Consensus 96 i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 96 IEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 2 22222232222 2233445567777777777664
No 466
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.47 E-value=0.17 Score=38.19 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=38.6
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
+++.|++++|.++.+++ +++..|..+|..+..+|+++.|+..|.++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35789999999999865 34679999999999999999999988875
No 467
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.33 E-value=5.1 Score=45.20 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=70.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-cCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECC-----C
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVH--PTLPYVLSSSDDMLIKLWDWE-----K 130 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~dg~i~iwd~~-----~ 130 (871)
.++-+.-+.-++.-++-+....+.|||.+.+.....-. ...+.|..+.|. |+++.+++.|..+.|.+|.-. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 44445555555544455556689999998876433322 457789999996 578888888888999998642 1
Q ss_pred ---CceEEEE--eecCC-cceEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002881 131 ---GWMCTQI--FEGHS-HYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (871)
Q Consensus 131 ---~~~~~~~--~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (871)
.+..... +..++ ++|.+..|.+ ++ .+++|+ +..+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G-~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLK-DG-TLVVGS-GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEec-CC-eEEEEe-CCEEEEECC
Confidence 1111111 23343 6799999997 44 455544 356777764
No 468
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=0.2 Score=47.21 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=43.5
Q ss_pred eeeeeccCCHHHHHHHHHHcCC----hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHH
Q 002881 646 FELAIQLGRLEVAQEIATEVQS----ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAK 721 (871)
Q Consensus 646 f~~~l~l~~~~~A~~~~~~~~~----~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~ 721 (871)
|-+.---+++++|-+++.+..+ ..-|...|...+ .|.+|+.++++-....-.|. .. -.+.
T Consensus 21 F~lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~afl------kaA~~h~k~~skhDaat~Yv---------eA-~~cy 84 (288)
T KOG1586|consen 21 FLLFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFL------KAADLHLKAGSKHDAATTYV---------EA-ANCY 84 (288)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHhcCCchhHHHHHH---------HH-HHHh
Confidence 4444455688888887654332 223333333322 33444444443222222111 11 1222
Q ss_pred HcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHH
Q 002881 722 EQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAAL 757 (871)
Q Consensus 722 ~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~ 757 (871)
+..+...|..|+ +.|+++|.++||+..|+.
T Consensus 85 kk~~~~eAv~cL------~~aieIyt~~Grf~~aAk 114 (288)
T KOG1586|consen 85 KKVDPEEAVNCL------EKAIEIYTDMGRFTMAAK 114 (288)
T ss_pred hccChHHHHHHH------HHHHHHHHhhhHHHHHHh
Confidence 333455555554 567778888888877753
No 469
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.25 E-value=4.5 Score=42.36 Aligned_cols=119 Identities=9% Similarity=0.087 Sum_probs=75.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE---EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC---TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (871)
...++|.+|.||+|.+.|++--.+..|.+.+....... .......+..|....|.. +.-++..+..| +-+|...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEc
Confidence 34669999999999999999999999999998433111 112222344588999985 45566555444 5566543
Q ss_pred CC-CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC
Q 002881 174 SP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 174 ~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
.. ...+..+.+...|+...|.++..-.+++++-..+.+.=+-+++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 32 2344556778888888998887642333332344444344443
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.08 E-value=14 Score=37.01 Aligned_cols=219 Identities=12% Similarity=0.118 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCC-------CCceeEEeee-----cCCCEEEEEEeCCCCE------------EE
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQ-------SQTMAKSFEV-----TELPVRSAKFVARKQW------------VV 73 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~-------~~~~~~~~~~-----~~~~v~~~~~~~~~~~------------l~ 73 (871)
-+.|+++|.+.+-++....+...+||.. ...++-++.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5689999999877776668899999986 1223333332 1346788888764433 57
Q ss_pred EEeCCCeEEEEECCCCcE-----EEEEc-cCCCCe-EEEEEcC--CCCEEEEEE-CCCeEEEEECCCCceEEE--Eeec-
Q 002881 74 AGADDMFIRVYNYNTMDK-----VKVFE-AHTDYI-RCVAVHP--TLPYVLSSS-DDMLIKLWDWEKGWMCTQ--IFEG- 140 (871)
Q Consensus 74 ~~~~dg~i~iw~~~~~~~-----~~~~~-~~~~~i-~~i~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~- 140 (871)
.+++||+|.-|+..-+.. ...+. .....| ..+++.. .+.+|..+. ..++|.++|-.-. .... .+..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~-~~~~~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR-PPPLPGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc-cccCCCCccCC
Confidence 788999999998532211 12222 112222 3344443 345665553 4688888874422 1110 0000
Q ss_pred ---------------CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe--cCCCCeeEEEEeecC----Cc
Q 002881 141 ---------------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGG----DK 199 (871)
Q Consensus 141 ---------------~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~----~~ 199 (871)
..-.|+-..-.+ +.+.=+.+..-|.|-+||+. +..++++. +.-...+.++..|.. .+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 000111111122 11222233345789999985 44555552 222344566665531 12
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEecCccc------CeEEEEEcC
Q 002881 200 PYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------NVSAVCFHP 239 (871)
Q Consensus 200 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~v~~i~~~p 239 (871)
.+|+--..||+|..||..+++.+-.+....+ .++.+.|..
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 2667667899999999998887777765433 356777765
No 471
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.05 E-value=0.78 Score=30.65 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCC---CEEEEEECCCeEEEEECCCC
Q 002881 100 DYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKG 131 (871)
Q Consensus 100 ~~i~~i~~~~~~---~~l~~~~~dg~i~iwd~~~~ 131 (871)
+.++++.|+|+. .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 47888888899999999964
No 472
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.85 E-value=0.42 Score=43.25 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=39.9
Q ss_pred eeeeccCCHHHHHHHHHHcCC----hHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 647 ELAIQLGRLEVAQEIATEVQS----ESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~~~----~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.+.+..|++++|+..+..+.. +..+..+|+.++..|+++.|..+|.++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 445688999999999977654 457888999999999999999999875
No 473
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.77 E-value=0.73 Score=44.32 Aligned_cols=101 Identities=23% Similarity=0.392 Sum_probs=68.3
Q ss_pred HHHHHHccCHHHHhhhCCC----CCcchh-HHH-HHHHHhCCChhhhhhc-----ccCccc------ceeeeeccCCHHH
Q 002881 595 YKTLVMRGDLERANEILPS----IPKEHH-NSV-ARFLESRGMIEEAIEV-----ATDPDY------RFELAIQLGRLEV 657 (871)
Q Consensus 595 ~~~~~~~~~~~~a~~~l~~----i~~~~~-~~~-~~~~~~~~~~~~a~~~-----~~~~~~------~f~~~l~l~~~~~ 657 (871)
|-.++..+..+.|..++.. .|.+.+ ..+ +-+++..|.++.|.++ ..||.+ +.-+....|+=-+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHH
Confidence 3344545555555433322 233222 233 4556889999998865 355533 3456667777778
Q ss_pred HHHHHH-----HcCChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 658 AQEIAT-----EVQSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 658 A~~~~~-----~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
|.+-.. .+.+...|.+||+.++..++|+.|.-||..+-
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 877664 46789999999999999999999999999863
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.68 E-value=8.4 Score=33.47 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=72.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCceEE------EEeecCCcceEEEEEec---C-CCCEEEEEECCCcEEEEEC
Q 002881 103 RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT------QIFEGHSHYVMQVTFNP---K-DTNTFASASLDRTIKIWNL 172 (871)
Q Consensus 103 ~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~v~~~~~~p---~-~~~~l~~~~~dg~i~i~d~ 172 (871)
..-.|....+.|+.++.-|.|.|++........ ..+..-...|++++-.| . +...|+.|+ ...+..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345677777789999999999999876431111 11222345577775443 2 345666665 568999999
Q ss_pred CCCCCeEEEecCCCCeeEEEEeecCC--cCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 173 GSPDPNFTLDAHQKGVNCVDYFTGGD--KPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~i~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
....-++.-. -..+++++.+-.-+. .+++++|+ +..|.-||....+..++.
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 8776555433 346777777644332 33455544 567777886655544443
No 475
>PRK12370 invasion protein regulator; Provisional
Probab=91.60 E-value=1.4 Score=50.37 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=62.0
Q ss_pred eeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcch--------hHHHHHhcCCHHHHH
Q 002881 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSG--------LLLLYSSLGDAEGIS 714 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~--------l~~l~~~~~~~~~~~ 714 (871)
++...|++++|.+.+++. +++..|..+|..+...|+++.|+.+|.++-..+- +..++...|+.+...
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH
Confidence 445778888888887652 3456788889999999999999999888743211 111234456655444
Q ss_pred HHHHHHHHcC--Cc----hHHHHHHHHcCCHHHHHHHHHHC
Q 002881 715 KLASLAKEQG--KN----NVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 715 ~l~~~~~~~~--~~----~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
...+.+.... .. ...+.++...|++++|.+.+.+.
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4444333221 11 12344555667777777776553
No 476
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.53 E-value=0.28 Score=37.36 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=38.4
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
++.|++++|.++++.. ++...+-.||+.++..|+++.|++.+.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999998764 567899999999999999999999887754
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.53 E-value=36 Score=40.54 Aligned_cols=160 Identities=10% Similarity=0.171 Sum_probs=101.5
Q ss_pred cCCCCEEEEEEc---C----CCCEEEEEEcCCeEEEEeCC------C---------CceeEEeee---cCCCEEEEEEeC
Q 002881 13 QRSERVKSVDLH---P----SEPWILASLYSGTVCIWNYQ------S---------QTMAKSFEV---TELPVRSAKFVA 67 (871)
Q Consensus 13 ~h~~~v~~i~~s---~----~~~~la~~~~dg~v~iwd~~------~---------~~~~~~~~~---~~~~v~~~~~~~ 67 (871)
.-..+|..|.|. . ..++|++=. ...+.|+... . -.++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 224666654 5567777711 1 023333432 234788899998
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCc-----EEEEEccCCC----------CeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 002881 68 -RKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHTD----------YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (871)
Q Consensus 68 -~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~----------~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~ 131 (871)
+...||+....|...||++.... .......+.+ .-..+.|.++-+.|++++.. .+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCC
Confidence 45689999999999999992111 1111111222 23468898888888888775 6899999987
Q ss_pred ceEE-EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 132 WMCT-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 132 ~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
.... -........|..+.-+|.+.++++.-+ ...|...++...
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 5433 233345567888888885444444443 367877787653
No 478
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.48 E-value=7.1 Score=44.53 Aligned_cols=144 Identities=13% Similarity=0.168 Sum_probs=90.3
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeE------Eeee----------------cCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAK------SFEV----------------TELPVRSAKFVA--RKQWVVAGADDMFIR 82 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~------~~~~----------------~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 82 (871)
+.++++|. .+.|.||+...-.... .+.. ....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 8899999976432211 1100 011244443332 456788999999999
Q ss_pred EEECCC-------C----c---------EEEEEccCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCCC--ceEEEEe
Q 002881 83 VYNYNT-------M----D---------KVKVFEAHTDYIRCVAVH--PTLPYVLSSSDDMLIKLWDWEKG--WMCTQIF 138 (871)
Q Consensus 83 iw~~~~-------~----~---------~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 138 (871)
+|.+++ . + +-..+ .-....++++++ ...++||+++....|.||-.... ......-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997631 0 0 01111 223468999998 77888888888888888865532 1111111
Q ss_pred ecCCcceEEEEEecCC--CC---EEEEEECCCcEEEEEC
Q 002881 139 EGHSHYVMQVTFNPKD--TN---TFASASLDRTIKIWNL 172 (871)
Q Consensus 139 ~~~~~~v~~~~~~p~~--~~---~l~~~~~dg~i~i~d~ 172 (871)
..+.+.|.+++|.+.+ +. .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2356679999998743 22 7888899999999887
No 479
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.46 E-value=0.18 Score=49.73 Aligned_cols=79 Identities=25% Similarity=0.245 Sum_probs=56.3
Q ss_pred HHHHhCCChhhhhhcc-cCc---ccceeeeeccCCHHHHHHHHHHc---CC--hHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 624 RFLESRGMIEEAIEVA-TDP---DYRFELAIQLGRLEVAQEIATEV---QS--ESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 624 ~~~~~~~~~~~a~~~~-~~~---~~~f~~~l~l~~~~~A~~~~~~~---~~--~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.|.+..+.+.+|+++. +++ ..|-..+.+||+++.|++-|+.. ++ -+.|-.||.+++..|+++.|+++|+++
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhh
Confidence 3444445556666554 232 22335678999999999998753 32 457888999999999999999999999
Q ss_pred CCcchhHH
Q 002881 695 MDLSGLLL 702 (871)
Q Consensus 695 ~d~~~l~~ 702 (871)
-+++----
T Consensus 176 LeldP~Ne 183 (304)
T KOG0553|consen 176 LELDPDNE 183 (304)
T ss_pred hccCCCcH
Confidence 88865333
No 480
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.39 E-value=0.035 Score=57.12 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred eeeeccCCHHHHHHHHHH-------cCChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 647 ELAIQLGRLEVAQEIATE-------VQSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~-------~~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
.+....|++++|+++.+. .+++..|+.+|+.+...++++.|+++|.++-
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~ 71 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL 71 (280)
T ss_dssp --------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 566788999999998842 2356799999999999999999999999764
No 481
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.38 E-value=23 Score=38.00 Aligned_cols=193 Identities=12% Similarity=0.035 Sum_probs=105.8
Q ss_pred EEEEEEcCCeEEEEeCCCCceeEEeeecC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCC-CCeEEE
Q 002881 29 WILASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCV 105 (871)
Q Consensus 29 ~la~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~~i 105 (871)
.+.++..+|.|.-.|.+++..+-...... ..+.+-.+..+|+ |++++.+|.+..+|..+|+......... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 35555678888888888887553322211 1222222233665 8888899999999998899888877655 111111
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC--CcceEEEEEecCCCCEEEEEEC--CCcEEEEECCCCCCeEEE
Q 002881 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTFNPKDTNTFASASL--DRTIKIWNLGSPDPNFTL 181 (871)
Q Consensus 106 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 181 (871)
..-.++ .+..++.+|.+.-.|..++...-...... ...+..-.. . ....++.+.. ++.+.-.|...++.....
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-e-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 222232 44445577888888887763322211110 111111001 1 2344555555 566777777777665543
Q ss_pred ec----CCCCe------eEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc
Q 002881 182 DA----HQKGV------NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH 228 (871)
Q Consensus 182 ~~----~~~~i------~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 228 (871)
.. ....+ ..-...-++ -+..++.++.+...+..+++.+......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDG---GVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeecccCcccccccccccCceEEECC---cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 11 11111 111111122 2567778888999999999998887753
No 482
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.37 E-value=0.045 Score=49.59 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHH
Q 002881 666 QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQL 745 (871)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l 745 (871)
.++.....|+..+++..+.+..++......+|+ +..+++.+...|.+..|..+|...|++++|+++
T Consensus 40 ~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd--------------~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i 105 (143)
T PF00637_consen 40 NNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD--------------LDKALRLCEKHGLYEEAVYLYSKLGNHDEALEI 105 (143)
T ss_dssp -SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS---------------CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSST
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHcccccccC--------------HHHHHHHHHhcchHHHHHHHHHHcccHHHHHHH
Confidence 456778888888888877777777555444433 567778888899999999999999999999999
Q ss_pred HHHCCCchHHHHHHHhcCCc
Q 002881 746 LVESNRIPEAALMARSYLPS 765 (871)
Q Consensus 746 ~~~~~~~~~A~~la~~~~~~ 765 (871)
+.+.+.+++|+++++.....
T Consensus 106 ~~~~~~~~~a~e~~~~~~~~ 125 (143)
T PF00637_consen 106 LHKLKDYEEAIEYAKKVDDP 125 (143)
T ss_dssp SSSTHCSCCCTTTGGGCSSS
T ss_pred HHHHccHHHHHHHHHhcCcH
Confidence 88889999999999998864
No 483
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.28 E-value=22 Score=37.46 Aligned_cols=232 Identities=13% Similarity=0.059 Sum_probs=113.6
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---EEEE----ccCCCCeEEEEEcCC---CCEEEEEECC--------
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK---VKVF----EAHTDYIRCVAVHPT---LPYVLSSSDD-------- 120 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~----~~~~~~i~~i~~~~~---~~~l~~~~~d-------- 120 (871)
..+.|+|.|||..++ +...|.|.+++ ..+.. +..+ .........++++|+ ..+|.+....
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 467899999987655 45699999999 44443 2222 123456889999994 3445444331
Q ss_pred -CeEEEEECCCC-------ceEEEEeec---CCcceEEEEEecCCCCEEEEEECC-------------CcEEEEECCCCC
Q 002881 121 -MLIKLWDWEKG-------WMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLD-------------RTIKIWNLGSPD 176 (871)
Q Consensus 121 -g~i~iwd~~~~-------~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~d-------------g~i~i~d~~~~~ 176 (871)
..|.-|....+ ..+...... ..+.-..+.|.| ++.+.++.+.. |.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24444544332 111112222 345567799999 66555554433 233333432210
Q ss_pred ------------CeEEEecCCCCeeEEEEeecCCcCEEEEE--eCCCeEEEEECCCC-----------------------
Q 002881 177 ------------PNFTLDAHQKGVNCVDYFTGGDKPYLITG--SDDHTAKVWDYQTK----------------------- 219 (871)
Q Consensus 177 ------------~~~~~~~~~~~i~~i~~~~~~~~~~l~~~--~~dg~i~v~d~~~~----------------------- 219 (871)
....+..--.....++|.|.... |.++ +.++.=.|--+..+
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~--l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR--LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE--EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCc--EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00111111122356788877222 3333 22222122111111
Q ss_pred ------ceEEEecCcccCeEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCeEEE---E-EecCCccEEEEEEeeC
Q 002881 220 ------SCVQTLEGHTHNVSAVCFHP-------ELPIIITGSEDGTVRIWHATTYRLEN---T-LNYGLERVWAIGYMKS 282 (871)
Q Consensus 220 ------~~~~~~~~~~~~v~~i~~~p-------~~~~l~~~~~dg~v~iwd~~~~~~~~---~-~~~~~~~i~~i~~~~~ 282 (871)
.+...+..| ..++.+.|.+ .+.++++.-..+.|....+..+..+. . +.....++..++..||
T Consensus 238 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 122233323 4456666654 33455555556677777776443222 2 2223348999999999
Q ss_pred CCeEEEEEcCCeEE
Q 002881 283 SRRIVIGYDEGTIM 296 (871)
Q Consensus 283 ~~~l~~g~~dg~i~ 296 (871)
|.+.++...+|.|.
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99888877777763
No 484
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=4.2 Score=42.58 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=87.4
Q ss_pred EEEEECCCeEEEEECCCC--ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE----EecCCCC
Q 002881 114 VLSSSDDMLIKLWDWEKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT----LDAHQKG 187 (871)
Q Consensus 114 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~ 187 (871)
.+.+...|.+.-|-.... ...........++|.++.|++ |++.+++--.+.+|.+++....++... .+.....
T Consensus 36 qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 36 QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN 114 (657)
T ss_pred eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence 333444445555544321 123333344567899999999 899999999999999999855444322 2334455
Q ss_pred eeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCC
Q 002881 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIWHATTY 261 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~--~dg~v~iwd~~~~ 261 (871)
|....|+.+.+ ++.....| +-+|-... ...++..+.|.-.|.=..|.|+...++.++ ..+++.=+.++++
T Consensus 115 IlGF~W~~s~e---~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 115 ILGFCWTSSTE---IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEEecCee---EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 88888987754 55555444 45554432 344556667788888888999887554443 3333333444433
No 485
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=4.3 Score=43.32 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=55.7
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE
Q 002881 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (871)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 223 (871)
.|..+..++ .+..++.++.+|.+.++=.+...+...++..+..|+|-.+.-+.. ++
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~---~f-------------------- 160 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER---FF-------------------- 160 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce---ee--------------------
Confidence 356677777 667777777777665554333222233333333344333322211 11
Q ss_pred EecCcccCeEEEEEcCCC---CEEEEEECCCcEEEEeCCCCeEEEEE
Q 002881 224 TLEGHTHNVSAVCFHPEL---PIIITGSEDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 224 ~~~~~~~~v~~i~~~p~~---~~l~~~~~dg~v~iwd~~~~~~~~~~ 267 (871)
+-. ..-.+..++|||+. ..+..-+.|..+|+||....+.+...
T Consensus 161 tss-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 161 TSS-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred ccC-CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 111 12235567899976 56777788999999998876655433
No 486
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.19 E-value=1.1 Score=48.81 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=36.0
Q ss_pred eccCCHHHHHHHHHHcCC----hHHHHHH-HHHHHHcCChhhHHHHHHHcCC
Q 002881 650 IQLGRLEVAQEIATEVQS----ESKWKQL-GELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~~~----~~~w~~l-a~~al~~~~~~~A~~~y~~~~d 696 (871)
+.-|+|+.|.+.+..... |.....+ |+.|.+.|+++.|.+.|.++..
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~ 146 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE 146 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 456999999998875432 4554444 7777999999999999988754
No 487
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=91.14 E-value=1.5 Score=42.59 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=57.9
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHH
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISK 715 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~ 715 (871)
.+..|++.+|...+++. ++.+.|.-+|-.+.+.|+++.|...|.++-++. .+...|...||.+....
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 46789999999999875 346688899999999999999999999886553 44556666777666666
Q ss_pred HHHHHHHcCC
Q 002881 716 LASLAKEQGK 725 (871)
Q Consensus 716 l~~~~~~~~~ 725 (871)
+-.-+...+.
T Consensus 190 lll~a~l~~~ 199 (257)
T COG5010 190 LLLPAYLSPA 199 (257)
T ss_pred HHHHHHhCCC
Confidence 5555544444
No 488
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.00 E-value=1.7 Score=53.33 Aligned_cols=217 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHccCHHHHhhhCCCC------CcchhHHHHHHHHhCCChhhhhhcccCcccce-----------eeeeccCCHHHHH
Q 002881 597 TLVMRGDLERANEILPSI------PKEHHNSVARFLESRGMIEEAIEVATDPDYRF-----------ELAIQLGRLEVAQ 659 (871)
Q Consensus 597 ~~~~~~~~~~a~~~l~~i------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f-----------~~~l~l~~~~~A~ 659 (871)
.....++++.|...+... .......++..+...+..++|+.......... .+....|++++|.
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q ss_pred HHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 002881 660 EIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLF 734 (871)
Q Consensus 660 ~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 734 (871)
++++.+ .++..|..+|..+...|+++.|.++|.+ ......+.+.+..++......|+...|...+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK---------ALKRAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHH---------HHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Q ss_pred HcCC--------HHHHHHHHHHCCCchHHHHHHHh---cCCchHHHHHHHHHHHhhhhChhh----hhhcCCCccCCCCc
Q 002881 735 MLGK--------LEDCLQLLVESNRIPEAALMARS---YLPSKVSEIVAIWRKDLQKVNPKA----AESLADPEEYSNLF 799 (871)
Q Consensus 735 ~~g~--------~~~a~~l~~~~~~~~~A~~la~~---~~~~~~~~~~~~~~~~L~~~~~~~----a~~l~~~~~~~~~~ 799 (871)
..-. ......+|...+++++|+++-+. ..|.........-.-+....+.++ -+.+.-..+.+.+.
T Consensus 761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHH
Q ss_pred ccHHHHHHHhHHHhhccCCCCCC
Q 002881 800 DDWQVALAVESKAAATRGVHPPA 822 (871)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~a 822 (871)
..++......+.+++|...++.|
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
No 489
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.98 E-value=1.1 Score=29.90 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCEEEEEEcCCC---CEEEEEEcCCeEEEEeCCC
Q 002881 16 ERVKSVDLHPSE---PWILASLYSGTVCIWNYQS 46 (871)
Q Consensus 16 ~~v~~i~~s~~~---~~la~~~~dg~v~iwd~~~ 46 (871)
+.|.++.|||.. .+|+.+-..|.|.|+|.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888899999999985
No 490
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.88 E-value=0.8 Score=34.90 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002881 667 SESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (871)
Q Consensus 667 ~~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (871)
++..|..+|..+...++++.|+++|.++-++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4568999999999999999999999986543
No 491
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=90.82 E-value=1.4 Score=47.82 Aligned_cols=97 Identities=23% Similarity=0.336 Sum_probs=64.5
Q ss_pred HccCHHHHhhhCCCCCc------chhHHHHHHHHhCCChhhhhhccc-----Cccc------ce-----eeeeccCCHHH
Q 002881 600 MRGDLERANEILPSIPK------EHHNSVARFLESRGMIEEAIEVAT-----DPDY------RF-----ELAIQLGRLEV 657 (871)
Q Consensus 600 ~~~~~~~a~~~l~~i~~------~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~------~f-----~~~l~l~~~~~ 657 (871)
..|+++.|...+..... .....++..+.+.|.+++|..... +|.. .+ ..++..+++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 46777777554433211 122455666677888888765431 1211 01 23457799999
Q ss_pred HHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 658 AQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 658 A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
|.+.+++. +....|..+|..+...|+++.|.+.|.++..
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99998764 2355788999999999999999999998764
No 492
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.81 E-value=0.32 Score=31.41 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHH
Q 002881 671 WKQLGELAMSTGKLEMAEGCMKQ 693 (871)
Q Consensus 671 w~~la~~al~~~~~~~A~~~y~~ 693 (871)
|..||..+...|+++.|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 67899999999999999999988
No 493
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.78 E-value=0.87 Score=35.78 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
..+..+|..+...|+++.|+++|.++-+. ....|+... .++.. ....+.++...|++++|++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~--~~a~~------~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI------EEQLGDDHP--DTANT------LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------HHHTTTHHH--HHHHH------HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHCCCCH--HHHHH------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678999999999999999999986543 233344211 11111 23345667788999999988874
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.48 E-value=9.1 Score=38.73 Aligned_cols=117 Identities=7% Similarity=0.023 Sum_probs=70.5
Q ss_pred CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEE------CCCeEEEEECCCCceEEEEee----cCCcceEEE
Q 002881 79 MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS------DDMLIKLWDWEKGWMCTQIFE----GHSHYVMQV 148 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~ 148 (871)
..|++||..+.+....-.+-.+.|+.+.|..+.+.++.|. ....+..||+.+. .....-. .-.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~-~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ-TWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-eeeecCCcccccCCCcEEEE
Confidence 4699999988777666666778899999996666666553 3567889998876 3322222 124778888
Q ss_pred EEecCCCCEEE-EEE-C--CCcEEEEECCCCCCeEE-EecCCCCeeEEEEeec
Q 002881 149 TFNPKDTNTFA-SAS-L--DRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTG 196 (871)
Q Consensus 149 ~~~p~~~~~l~-~~~-~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~ 196 (871)
.+...+...+. .|. . +..|..||-.+...+.. .......|..+.+.|-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 88654554444 433 2 23466666444333322 2222345666655544
No 495
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.46 E-value=2 Score=51.99 Aligned_cols=96 Identities=15% Similarity=0.025 Sum_probs=54.3
Q ss_pred HccCHHHHhhhCCCCCcc-----hhHHHHHHHHhCCChhhhhhcc-----cCccc---ceeeeecc---CCHHHHHHHHH
Q 002881 600 MRGDLERANEILPSIPKE-----HHNSVARFLESRGMIEEAIEVA-----TDPDY---RFELAIQL---GRLEVAQEIAT 663 (871)
Q Consensus 600 ~~~~~~~a~~~l~~i~~~-----~~~~~~~~~~~~~~~~~a~~~~-----~~~~~---~f~~~l~l---~~~~~A~~~~~ 663 (871)
..++++.|...++.+... .+......+...|..+.|.... .+|.. .+.++..+ |++++|.+.++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356666665444322111 1122233445566666655432 12222 22333444 88888877776
Q ss_pred Hc----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 664 EV----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 664 ~~----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
+. ++...|..+|..+.+.|+++.|+.+|.++-
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 43 246678888888888888888888887764
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.42 E-value=1.6 Score=48.59 Aligned_cols=97 Identities=14% Similarity=0.009 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHH-----cC-CchHHHHHHHHcCCHH
Q 002881 667 SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKE-----QG-KNNVAFLCLFMLGKLE 740 (871)
Q Consensus 667 ~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~-----~~-~~~~a~~~~~~~g~~~ 740 (871)
+.......|.++...|.+..|..+|..++.++...-+..+....+ +...|+.... .. ..+.+-....++.++.
T Consensus 934 ~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~ 1012 (1243)
T COG5290 934 DNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAELLPSDLLVEFRKAGDAEKILLTYLENLY 1012 (1243)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHH
Confidence 344566777888888999999999999988887775555544333 4444433321 12 2233344466788999
Q ss_pred HHHHHHHHCCCchHHHHHHHhcCC
Q 002881 741 DCLQLLVESNRIPEAALMARSYLP 764 (871)
Q Consensus 741 ~a~~l~~~~~~~~~A~~la~~~~~ 764 (871)
+|+.++++..++.+|+..|+.-+.
T Consensus 1013 eava~~ckgs~y~ea~~~a~~s~~ 1036 (1243)
T COG5290 1013 EAVAMDCKGSEYREAFCEAMVSRL 1036 (1243)
T ss_pred HHHHHHcccccchHHHHHHHHhhh
Confidence 999999999999999988776543
No 497
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=90.27 E-value=0.47 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHHcC
Q 002881 672 KQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 672 ~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
+.+|..++..++++.|+..|.++-
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 345666666666666666665543
No 498
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.22 E-value=15 Score=39.40 Aligned_cols=143 Identities=9% Similarity=0.034 Sum_probs=72.7
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Cce-EEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 100 DYIRCVAVHPTLPYVLSSS-----------DDM-LIKLWDWEK--GWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 100 ~~i~~i~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
.....|+|.++|+.+++-. ..+ .|.+++-.. +.. ....+...-.....+++.+ ++ +++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC--EEEeCCC
Confidence 3467789999988665542 223 677776432 211 2233433344567888887 55 4444444
Q ss_pred CcEEEEECCCC-----CCeEEEe---c----CCCCeeEEEEeecCCcCEEEEEeC------------------CCeEEEE
Q 002881 165 RTIKIWNLGSP-----DPNFTLD---A----HQKGVNCVDYFTGGDKPYLITGSD------------------DHTAKVW 214 (871)
Q Consensus 165 g~i~i~d~~~~-----~~~~~~~---~----~~~~i~~i~~~~~~~~~~l~~~~~------------------dg~i~v~ 214 (871)
...++.|.... +....+. . +....+.+.|.|++.- |+..++. .|.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EEecccCCCceeccCCCccCcccccCceEEEE
Confidence 33334354321 2111122 1 1234678889888751 3333321 1345555
Q ss_pred ECCCCceEEEecCcccCeEEEEEcCCCCEEEEE
Q 002881 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (871)
Q Consensus 215 d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 247 (871)
+..++.. ..+.........++|+|+|.++++-
T Consensus 170 ~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 170 NPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence 5544332 2222223345678888887776553
No 499
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.18 E-value=5.4 Score=48.41 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=31.7
Q ss_pred ccCCHHHHHHHHHHcC----ChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 651 QLGRLEVAQEIATEVQ----SESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~~----~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..|++++|...++.+. ....|..+|..++..|+++.|+.+|.++-
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777888877776432 23456777777888888888888877654
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.16 E-value=25 Score=36.36 Aligned_cols=231 Identities=12% Similarity=0.086 Sum_probs=114.6
Q ss_pred CCEEEEEEcCCeEEEEeCCC--CceeEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcE------------
Q 002881 27 EPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDK------------ 91 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~------------ 91 (871)
+++|+.|+.+|...+. ... ++..+.+ +..+|+++...+..+.|++-+. ...++++++.....
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 3689999999855444 554 3344333 4568999999998887776654 44699999843221
Q ss_pred ---EEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEee-------cCCcceEEEEEecC-CCCEEE
Q 002881 92 ---VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE-------GHSHYVMQVTFNPK-DTNTFA 159 (871)
Q Consensus 92 ---~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~p~-~~~~l~ 159 (871)
....-+|........+.... ..++++....+|.++.+.........+. ....++..+..++. ....++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 01111333333333333221 2334444556777765543211100010 11123333333331 245677
Q ss_pred EEECCCcEEEEECCC--CCCe-----EEEecCC-CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceE--EEecCcc
Q 002881 160 SASLDRTIKIWNLGS--PDPN-----FTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--QTLEGHT 229 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~--~~~~-----~~~~~~~-~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~ 229 (871)
.|+..+...++++.. ..+. ....... .++..... +++ -++.+.++ ...+.|....... ..+. -.
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~---e~Llc~~~-~~v~Vn~~G~~~~r~~~l~-w~ 243 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRD---EFLLCYDE-FGVFVNLYGKRRSRNPILH-WE 243 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCC---eEEEEECc-EEEEEeCCCCccccceEEE-cC
Confidence 776643344444432 1110 0011111 33333333 232 24444444 3444554421221 1222 23
Q ss_pred cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 002881 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (871)
....++++.. +++++-+. ..|.++++.+++.++++..
T Consensus 244 ~~p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 244 FMPESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 4456777764 56776664 4699999999998887764
Done!