Query 002881
Match_columns 871
No_of_seqs 1003 out of 5049
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 05:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 100.0 7.7E-94 2.6E-98 864.7 94.1 790 3-796 1-812 (814)
2 2ymu_A WD-40 repeat protein; u 100.0 1E-48 3.5E-53 451.7 71.1 509 7-587 8-577 (577)
3 1nr0_A Actin interacting prote 100.0 3.4E-49 1.2E-53 456.2 56.7 455 7-490 51-607 (611)
4 1nr0_A Actin interacting prote 100.0 4.9E-48 1.7E-52 446.6 54.5 447 13-490 16-563 (611)
5 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-46 1.2E-50 449.3 60.3 417 48-490 4-456 (814)
6 2ymu_A WD-40 repeat protein; u 100.0 3.6E-45 1.2E-49 422.1 65.2 430 6-490 48-535 (577)
7 3sfz_A APAF-1, apoptotic pepti 100.0 6.7E-46 2.3E-50 467.3 56.7 548 10-589 610-1248(1249)
8 2ynn_A Coatomer subunit beta'; 100.0 5.1E-45 1.7E-49 382.6 44.2 298 3-300 1-301 (304)
9 1pgu_A Actin interacting prote 100.0 3.3E-42 1.1E-46 400.7 62.0 540 12-589 15-613 (615)
10 1pgu_A Actin interacting prote 100.0 4.4E-42 1.5E-46 399.7 56.4 461 6-490 54-610 (615)
11 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-43 5.2E-48 445.9 45.5 463 7-490 649-1245(1249)
12 2oaj_A Protein SNI1; WD40 repe 100.0 3E-41 1E-45 403.5 61.9 467 12-491 14-658 (902)
13 1vyh_C Platelet-activating fac 100.0 3.5E-43 1.2E-47 385.0 41.5 290 8-299 101-408 (410)
14 3ow8_A WD repeat-containing pr 100.0 1.1E-41 3.7E-46 359.5 41.8 288 8-299 25-318 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 2.1E-41 7.1E-46 361.3 44.6 289 5-298 45-339 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 1.1E-40 3.8E-45 357.3 43.5 290 6-298 55-353 (354)
17 4ery_A WD repeat-containing pr 100.0 2.4E-39 8.2E-44 341.5 42.1 292 4-299 12-309 (312)
18 3iz6_a 40S ribosomal protein R 100.0 1E-40 3.5E-45 361.8 31.8 292 5-299 56-372 (380)
19 4gqb_B Methylosome protein 50; 100.0 1.3E-39 4.6E-44 345.9 39.2 288 12-304 27-333 (344)
20 2oaj_A Protein SNI1; WD40 repe 100.0 5.4E-39 1.9E-43 384.0 49.2 466 13-490 56-779 (902)
21 3frx_A Guanine nucleotide-bind 100.0 4.6E-39 1.6E-43 339.6 41.7 288 5-298 7-313 (319)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-39 8.3E-44 345.9 37.7 297 1-300 1-333 (345)
23 4g56_B MGC81050 protein; prote 100.0 4.8E-39 1.6E-43 344.8 36.3 285 11-299 38-340 (357)
24 2hes_X YDR267CP; beta-propelle 100.0 1.7E-38 5.8E-43 337.0 39.1 291 5-299 4-325 (330)
25 2xzm_R RACK1; ribosome, transl 100.0 1.7E-38 6E-43 339.3 38.6 291 2-298 8-336 (343)
26 1erj_A Transcriptional repress 100.0 8.7E-38 3E-42 340.4 42.8 281 13-298 62-385 (393)
27 1vyh_C Platelet-activating fac 100.0 5.2E-38 1.8E-42 343.9 40.8 287 50-380 101-408 (410)
28 1r5m_A SIR4-interacting protei 100.0 1.2E-37 4.1E-42 344.2 42.6 281 13-300 43-359 (425)
29 1got_B GT-beta; complex (GTP-b 100.0 6.7E-37 2.3E-41 326.4 44.8 290 47-380 45-340 (340)
30 2ynn_A Coatomer subunit beta'; 100.0 1.1E-36 3.9E-41 319.0 43.3 292 48-382 4-301 (304)
31 3ow8_A WD repeat-containing pr 100.0 7.6E-37 2.6E-41 322.4 41.0 290 48-381 23-319 (321)
32 4aow_A Guanine nucleotide-bind 100.0 8E-37 2.7E-41 326.6 41.7 294 1-298 24-333 (340)
33 2pbi_B Guanine nucleotide-bind 100.0 2.4E-36 8.3E-41 323.6 43.5 291 48-379 55-353 (354)
34 3iz6_a 40S ribosomal protein R 100.0 8.4E-38 2.9E-42 338.8 32.2 310 37-383 46-375 (380)
35 3frx_A Guanine nucleotide-bind 100.0 7.7E-36 2.6E-40 314.9 43.5 299 48-383 8-317 (319)
36 3zwl_B Eukaryotic translation 100.0 6.1E-36 2.1E-40 323.7 43.0 287 8-299 25-343 (369)
37 1gxr_A ESG1, transducin-like e 100.0 3.9E-36 1.3E-40 320.8 39.1 322 14-382 8-336 (337)
38 2pm9_A Protein WEB1, protein t 100.0 3.4E-38 1.2E-42 347.7 22.2 285 14-300 11-335 (416)
39 1sq9_A Antiviral protein SKI8; 100.0 2.7E-36 9.3E-41 330.2 35.9 288 5-298 6-391 (397)
40 3vl1_A 26S proteasome regulato 100.0 1.1E-36 3.9E-41 335.9 32.3 329 17-382 58-418 (420)
41 4gqb_B Methylosome protein 50; 100.0 6.5E-36 2.2E-40 317.5 36.8 247 13-262 80-333 (344)
42 3dm0_A Maltose-binding peripla 100.0 1.1E-35 3.7E-40 349.6 42.3 288 7-299 374-690 (694)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-35 9.3E-40 314.5 41.1 303 48-384 6-336 (345)
44 3odt_A Protein DOA1; ubiquitin 100.0 6.1E-35 2.1E-39 307.9 41.5 285 5-302 8-296 (313)
45 1gxr_A ESG1, transducin-like e 100.0 5.8E-35 2E-39 311.6 41.6 279 12-298 48-333 (337)
46 1r5m_A SIR4-interacting protei 100.0 4.4E-35 1.5E-39 323.6 41.1 303 36-385 24-363 (425)
47 3k26_A Polycomb protein EED; W 100.0 7.4E-36 2.5E-40 322.6 32.8 284 10-299 13-363 (366)
48 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-35 9.3E-40 319.1 37.0 285 11-299 4-358 (372)
49 4ery_A WD repeat-containing pr 100.0 2.7E-34 9.1E-39 302.8 43.2 291 47-381 13-310 (312)
50 2hes_X YDR267CP; beta-propelle 100.0 2.3E-34 7.9E-39 305.2 41.2 248 45-298 2-276 (330)
51 3ei3_B DNA damage-binding prot 100.0 3.9E-35 1.3E-39 319.1 36.0 284 7-300 65-380 (383)
52 4g56_B MGC81050 protein; prote 100.0 2.5E-35 8.7E-40 315.9 33.5 316 19-383 9-343 (357)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.4E-34 2.9E-38 315.2 45.0 276 8-300 111-389 (445)
54 3v7d_B Cell division control p 100.0 8E-34 2.7E-38 317.5 45.2 279 9-299 115-418 (464)
55 3i2n_A WD repeat-containing pr 100.0 3.1E-35 1E-39 316.6 31.7 288 8-299 11-350 (357)
56 1erj_A Transcriptional repress 100.0 4E-34 1.4E-38 311.5 40.8 294 1-300 1-339 (393)
57 2xzm_R RACK1; ribosome, transl 100.0 9.5E-34 3.2E-38 302.6 42.1 246 48-299 12-282 (343)
58 2pm7_B Protein transport prote 100.0 1.5E-34 5.1E-39 301.8 34.7 251 9-259 3-284 (297)
59 2j04_B YDR362CP, TAU91; beta p 100.0 8.3E-36 2.8E-40 332.6 25.1 268 14-286 132-458 (524)
60 4aez_A CDC20, WD repeat-contai 100.0 3.2E-34 1.1E-38 313.6 37.2 276 18-300 96-378 (401)
61 4aow_A Guanine nucleotide-bind 100.0 3.5E-33 1.2E-37 298.3 44.5 303 46-383 27-337 (340)
62 2pm9_A Protein WEB1, protein t 100.0 1.4E-35 4.9E-40 326.6 24.8 285 13-300 65-412 (416)
63 4e54_B DNA damage-binding prot 100.0 9.9E-35 3.4E-39 321.1 30.3 290 7-301 111-429 (435)
64 4gga_A P55CDC, cell division c 100.0 6.9E-33 2.4E-37 304.9 44.5 276 18-300 108-393 (420)
65 3gre_A Serine/threonine-protei 100.0 2.3E-34 7.8E-39 319.1 32.7 287 8-298 55-436 (437)
66 3dw8_B Serine/threonine-protei 100.0 4.7E-34 1.6E-38 317.8 34.0 280 14-297 27-442 (447)
67 1yfq_A Cell cycle arrest prote 100.0 5.6E-34 1.9E-38 304.8 33.3 277 10-297 6-319 (342)
68 3dwl_C Actin-related protein 2 100.0 1.4E-35 4.6E-40 322.1 20.3 284 11-299 7-376 (377)
69 3bg1_A Protein SEC13 homolog; 100.0 1.2E-34 4.1E-39 305.4 24.6 253 7-259 5-292 (316)
70 3vl1_A 26S proteasome regulato 100.0 2.7E-33 9.1E-38 308.9 34.7 287 9-300 92-417 (420)
71 3zwl_B Eukaryotic translation 100.0 8.3E-32 2.8E-36 291.1 44.8 244 49-298 24-286 (369)
72 3dm0_A Maltose-binding peripla 100.0 1.9E-32 6.5E-37 321.9 42.6 249 49-301 374-631 (694)
73 2pm7_B Protein transport prote 100.0 8.6E-33 2.9E-37 288.4 34.7 249 51-299 3-282 (297)
74 4ggc_A P55CDC, cell division c 100.0 1.3E-31 4.3E-36 283.2 43.9 277 18-300 28-313 (318)
75 3v7d_B Cell division control p 100.0 2E-31 6.9E-36 298.0 47.5 317 48-416 112-460 (464)
76 3mmy_A MRNA export factor; mRN 100.0 2.7E-32 9.3E-37 294.8 38.6 287 5-297 29-341 (368)
77 2j04_A TAU60, YPL007P, hypothe 100.0 7E-35 2.4E-39 314.3 17.3 262 12-301 12-296 (588)
78 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-33 4.1E-38 315.2 27.7 334 48-421 125-519 (524)
79 3f3f_A Nucleoporin SEH1; struc 100.0 8.8E-33 3E-37 296.1 32.7 261 7-267 3-344 (351)
80 1p22_A F-BOX/WD-repeat protein 100.0 3.2E-32 1.1E-36 301.2 37.4 271 13-300 131-412 (435)
81 4a11_B DNA excision repair pro 100.0 3.9E-32 1.3E-36 298.3 37.8 288 8-299 36-362 (408)
82 3ei3_B DNA damage-binding prot 100.0 3.1E-32 1.1E-36 296.2 36.4 294 43-382 59-381 (383)
83 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-31 6.9E-36 296.0 41.9 276 7-298 151-438 (445)
84 3jrp_A Fusion protein of prote 100.0 3.3E-32 1.1E-36 295.5 33.8 254 7-262 3-289 (379)
85 3odt_A Protein DOA1; ubiquitin 100.0 5.5E-31 1.9E-35 277.6 41.8 286 47-384 8-297 (313)
86 3dwl_C Actin-related protein 2 100.0 3.3E-33 1.1E-37 303.3 25.4 244 52-299 6-279 (377)
87 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-31 6.5E-36 288.8 37.6 243 53-299 4-271 (372)
88 1sq9_A Antiviral protein SKI8; 100.0 1.5E-31 5.2E-36 292.4 36.7 245 50-300 9-320 (397)
89 4h5i_A Guanine nucleotide-exch 100.0 4.2E-32 1.4E-36 291.6 31.3 277 15-299 14-340 (365)
90 4e54_B DNA damage-binding prot 100.0 4.3E-32 1.5E-36 299.9 30.3 246 48-297 110-371 (435)
91 3k26_A Polycomb protein EED; W 100.0 5.9E-32 2E-36 292.0 30.3 288 53-381 14-364 (366)
92 3gre_A Serine/threonine-protei 100.0 4.7E-32 1.6E-36 300.5 29.3 268 22-302 34-359 (437)
93 3bg1_A Protein SEC13 homolog; 100.0 2.1E-32 7.3E-37 288.1 24.9 248 52-299 8-290 (316)
94 3i2n_A WD repeat-containing pr 100.0 4E-31 1.4E-35 284.4 33.7 245 51-299 12-288 (357)
95 4aez_A CDC20, WD repeat-contai 100.0 1E-30 3.5E-35 285.8 35.6 247 14-266 133-386 (401)
96 3dw8_B Serine/threonine-protei 100.0 3.9E-31 1.3E-35 294.2 32.9 247 56-306 27-377 (447)
97 4gga_A P55CDC, cell division c 100.0 1.7E-30 5.6E-35 285.9 36.0 252 11-267 143-402 (420)
98 3jro_A Fusion protein of prote 100.0 5.1E-32 1.7E-36 319.7 24.9 253 8-262 2-287 (753)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-30 8.2E-35 287.4 36.7 269 16-290 5-373 (450)
100 3jrp_A Fusion protein of prote 100.0 1.3E-30 4.4E-35 283.0 33.7 250 47-299 1-284 (379)
101 4a11_B DNA excision repair pro 100.0 7.3E-31 2.5E-35 288.1 31.8 307 36-385 22-367 (408)
102 2xyi_A Probable histone-bindin 100.0 2.4E-30 8.1E-35 285.4 33.7 282 17-299 47-407 (430)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 7E-31 2.4E-35 287.4 28.7 277 17-299 36-339 (402)
104 3f3f_A Nucleoporin SEH1; struc 100.0 4.5E-30 1.5E-34 275.0 34.2 246 51-299 5-334 (351)
105 2xyi_A Probable histone-bindin 100.0 2.1E-30 7.1E-35 285.8 30.5 250 10-260 123-410 (430)
106 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-31 3.9E-36 289.4 18.1 253 9-300 46-319 (588)
107 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-30 8.7E-35 276.1 25.2 264 21-298 42-329 (343)
108 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-29 9.7E-34 268.7 32.5 275 9-298 13-332 (355)
109 1yfq_A Cell cycle arrest prote 100.0 4E-29 1.4E-33 267.1 32.0 239 53-300 7-280 (342)
110 4h5i_A Guanine nucleotide-exch 100.0 7.1E-30 2.4E-34 274.2 26.2 244 10-260 68-343 (365)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-29 5.3E-34 276.7 28.8 250 8-263 74-345 (402)
112 4ggc_A P55CDC, cell division c 100.0 2.8E-28 9.5E-33 257.5 35.3 248 11-261 63-316 (318)
113 1p22_A F-BOX/WD-repeat protein 100.0 4E-28 1.4E-32 268.4 37.7 228 55-298 131-361 (435)
114 3mmy_A MRNA export factor; mRN 100.0 8.7E-28 3E-32 259.4 37.0 285 41-373 23-335 (368)
115 4gq1_A NUP37; propeller, trans 100.0 3.2E-29 1.1E-33 272.4 25.6 281 16-299 16-387 (393)
116 3jro_A Fusion protein of prote 100.0 3.5E-29 1.2E-33 295.5 26.7 251 50-301 2-284 (753)
117 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-27 3.8E-32 256.3 35.8 246 41-302 3-271 (355)
118 3bws_A Protein LP49; two-domai 100.0 7.8E-28 2.7E-32 266.3 35.3 277 15-298 122-428 (433)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-27 8.9E-32 262.9 36.8 236 58-299 5-336 (450)
120 1l0q_A Surface layer protein; 100.0 5.6E-26 1.9E-30 247.6 45.3 264 29-301 4-274 (391)
121 3bws_A Protein LP49; two-domai 100.0 8.5E-27 2.9E-31 257.9 38.4 321 14-383 59-432 (433)
122 3mkq_B Coatomer subunit alpha; 100.0 1.9E-29 6.7E-34 226.3 12.6 134 635-768 1-134 (177)
123 1k32_A Tricorn protease; prote 100.0 4.1E-26 1.4E-30 279.9 45.0 426 8-490 45-634 (1045)
124 4gq1_A NUP37; propeller, trans 100.0 7.2E-28 2.5E-32 261.8 22.2 236 22-258 96-387 (393)
125 2w18_A PALB2, fancn, partner a 100.0 6.6E-26 2.3E-30 229.4 30.1 286 5-298 25-353 (356)
126 1l0q_A Surface layer protein; 99.9 7.4E-25 2.5E-29 238.7 39.4 254 9-272 26-287 (391)
127 1k32_A Tricorn protease; prote 99.9 1.6E-23 5.4E-28 257.1 52.5 407 14-486 13-494 (1045)
128 2w18_A PALB2, fancn, partner a 99.9 2E-25 7E-30 225.8 25.3 244 6-258 77-355 (356)
129 1nir_A Nitrite reductase; hemo 99.9 4.5E-24 1.5E-28 240.2 38.3 270 22-298 144-454 (543)
130 3lrv_A PRE-mRNA-splicing facto 99.9 2.1E-25 7.2E-30 237.9 24.5 232 16-258 77-331 (343)
131 2ecf_A Dipeptidyl peptidase IV 99.9 6.9E-24 2.4E-28 251.7 34.9 276 15-298 36-409 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.9E-24 1.7E-28 232.7 28.9 268 16-293 63-375 (415)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.4E-28 229.5 28.6 263 10-283 112-409 (415)
134 1nir_A Nitrite reductase; hemo 99.9 8E-23 2.7E-27 229.9 35.0 281 18-302 181-514 (543)
135 3vgz_A Uncharacterized protein 99.9 7.6E-22 2.6E-26 211.4 38.7 273 14-294 39-336 (353)
136 1xfd_A DIP, dipeptidyl aminope 99.9 6.2E-23 2.1E-27 242.9 24.8 276 16-298 17-389 (723)
137 2ecf_A Dipeptidyl peptidase IV 99.9 5.8E-22 2E-26 235.2 33.0 316 57-418 36-458 (741)
138 3u4y_A Uncharacterized protein 99.9 4.3E-21 1.5E-25 203.5 35.3 276 21-302 3-304 (331)
139 2ojh_A Uncharacterized protein 99.9 2.5E-22 8.6E-27 209.1 25.0 252 34-293 19-293 (297)
140 2z3z_A Dipeptidyl aminopeptida 99.9 4.4E-21 1.5E-25 226.1 30.9 263 18-292 28-376 (706)
141 1ri6_A Putative isomerase YBHE 99.9 2.4E-20 8.1E-25 198.8 30.8 265 27-298 4-304 (343)
142 2z3z_A Dipeptidyl aminopeptida 99.9 2.2E-20 7.4E-25 220.2 33.1 274 16-299 82-432 (706)
143 1ri6_A Putative isomerase YBHE 99.9 3.2E-20 1.1E-24 197.8 31.2 265 13-284 35-335 (343)
144 1pby_B Quinohemoprotein amine 99.9 2.9E-20 1E-24 197.5 30.3 262 28-300 2-308 (337)
145 2ojh_A Uncharacterized protein 99.9 5.1E-21 1.7E-25 199.1 21.5 236 10-251 36-293 (297)
146 3o4h_A Acylamino-acid-releasin 99.9 8.8E-21 3E-25 217.9 25.2 276 1-294 5-304 (582)
147 3vgz_A Uncharacterized protein 99.9 9.5E-19 3.2E-23 187.2 37.3 235 57-298 40-299 (353)
148 3u4y_A Uncharacterized protein 99.9 6.4E-19 2.2E-23 186.7 33.5 231 63-298 3-248 (331)
149 1z68_A Fibroblast activation p 99.9 1.4E-20 4.8E-25 222.3 22.1 272 19-298 19-387 (719)
150 1xfd_A DIP, dipeptidyl aminope 99.8 2.9E-20 9.9E-25 219.9 24.0 278 10-292 52-430 (723)
151 3hfq_A Uncharacterized protein 99.8 4.3E-18 1.5E-22 181.6 34.8 267 29-298 4-313 (347)
152 1jmx_B Amine dehydrogenase; ox 99.8 1.2E-18 4.2E-23 186.0 27.6 241 20-270 4-335 (349)
153 1pby_B Quinohemoprotein amine 99.8 1.1E-18 3.8E-23 185.3 26.7 243 17-270 35-320 (337)
154 3hfq_A Uncharacterized protein 99.8 5.6E-18 1.9E-22 180.7 31.8 247 13-264 37-323 (347)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 6.3E-19 2.2E-23 192.8 23.4 200 14-219 35-279 (434)
156 3pe7_A Oligogalacturonate lyas 99.8 1.6E-18 5.4E-23 188.3 26.2 286 8-298 23-378 (388)
157 3scy_A Hypothetical bacterial 99.8 3.1E-17 1E-21 176.1 35.0 269 24-298 10-333 (361)
158 4a5s_A Dipeptidyl peptidase 4 99.8 4.7E-18 1.6E-22 200.5 30.6 268 15-291 16-382 (740)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 4.1E-19 1.4E-23 194.3 19.3 214 37-261 23-279 (434)
160 3scy_A Hypothetical bacterial 99.8 3.5E-17 1.2E-21 175.6 32.2 261 14-280 48-360 (361)
161 3o4h_A Acylamino-acid-releasin 99.8 3.8E-18 1.3E-22 195.9 26.0 232 57-299 21-273 (582)
162 3pe7_A Oligogalacturonate lyas 99.8 5.1E-17 1.8E-21 176.3 30.0 246 39-290 12-308 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.5E-16 8.5E-21 168.9 30.8 266 29-298 4-337 (365)
164 1jmx_B Amine dehydrogenase; ox 99.8 1.3E-16 4.4E-21 170.3 27.7 228 62-300 4-323 (349)
165 1z68_A Fibroblast activation p 99.8 7E-18 2.4E-22 199.1 18.8 269 17-290 61-428 (719)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.3E-16 4.3E-21 171.2 26.8 243 15-261 39-342 (365)
167 3c5m_A Oligogalacturonate lyas 99.7 1.4E-17 4.7E-22 181.3 18.1 271 18-297 38-377 (396)
168 2oiz_A Aromatic amine dehydrog 99.7 4.7E-16 1.6E-20 165.8 27.9 256 20-284 54-360 (361)
169 2oiz_A Aromatic amine dehydrog 99.7 2.3E-15 7.9E-20 160.4 32.8 262 26-298 14-330 (361)
170 4a5s_A Dipeptidyl peptidase 4 99.7 6.4E-16 2.2E-20 182.2 30.4 231 59-297 18-346 (740)
171 3azo_A Aminopeptidase; POP fam 99.7 1.8E-16 6.3E-21 185.1 25.2 273 9-288 17-351 (662)
172 2gop_A Trilobed protease; beta 99.7 4E-15 1.4E-19 158.5 31.3 257 14-298 13-327 (347)
173 3fvz_A Peptidyl-glycine alpha- 99.7 3.3E-15 1.1E-19 157.4 29.8 241 14-259 22-321 (329)
174 2dg1_A DRP35, lactonase; beta 99.7 2.2E-15 7.5E-20 159.5 26.9 270 15-293 5-301 (333)
175 3c5m_A Oligogalacturonate lyas 99.7 6E-16 2E-20 168.3 23.1 244 40-291 13-302 (396)
176 1q7f_A NHL, brain tumor CG1071 99.7 1.7E-14 5.9E-19 148.8 32.4 238 13-260 27-280 (286)
177 3fvz_A Peptidyl-glycine alpha- 99.7 9.7E-15 3.3E-19 153.9 28.8 239 57-298 23-318 (329)
178 2xdw_A Prolyl endopeptidase; a 99.7 2E-14 6.9E-19 168.6 32.2 245 13-262 122-416 (710)
179 1qks_A Cytochrome CD1 nitrite 99.7 3.9E-13 1.3E-17 150.3 38.8 261 25-290 165-458 (567)
180 3azo_A Aminopeptidase; POP fam 99.7 2.7E-15 9.2E-20 175.2 21.4 250 10-266 62-375 (662)
181 2z2n_A Virginiamycin B lyase; 99.7 7.7E-13 2.6E-17 137.3 37.9 276 11-297 10-291 (299)
182 1q7f_A NHL, brain tumor CG1071 99.6 2E-13 6.8E-18 140.8 32.1 235 56-299 28-277 (286)
183 2xdw_A Prolyl endopeptidase; a 99.6 1E-13 3.6E-18 162.6 33.5 263 25-292 81-400 (710)
184 3e5z_A Putative gluconolactona 99.6 1.5E-13 5.3E-18 142.4 29.8 239 48-298 18-283 (296)
185 1qks_A Cytochrome CD1 nitrite 99.6 1.8E-12 6.1E-17 145.0 39.4 281 15-298 196-534 (567)
186 3e5z_A Putative gluconolactona 99.6 9.3E-14 3.2E-18 144.1 26.9 240 11-263 23-289 (296)
187 2gop_A Trilobed protease; beta 99.6 9.6E-14 3.3E-18 147.8 26.5 225 16-262 59-332 (347)
188 3no2_A Uncharacterized protein 99.6 6.5E-13 2.2E-17 135.1 29.4 242 68-319 4-260 (276)
189 3no2_A Uncharacterized protein 99.6 1.1E-12 3.6E-17 133.5 30.4 236 26-270 4-262 (276)
190 2dg1_A DRP35, lactonase; beta 99.6 1.7E-12 5.8E-17 137.2 32.6 235 11-251 40-301 (333)
191 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-13 3.7E-18 161.9 25.1 278 6-291 58-382 (695)
192 1rwi_B Serine/threonine-protei 99.6 2.2E-13 7.5E-18 139.1 24.1 240 17-262 25-266 (270)
193 2mad_H Methylamine dehydrogena 99.6 1.3E-11 4.5E-16 131.2 38.5 265 22-298 27-346 (373)
194 2bkl_A Prolyl endopeptidase; m 99.6 4E-14 1.4E-18 165.6 20.7 244 13-263 118-400 (695)
195 1rwi_B Serine/threonine-protei 99.6 8.6E-13 2.9E-17 134.7 25.6 239 59-302 25-264 (270)
196 2qc5_A Streptogramin B lactona 99.6 1.5E-11 5.1E-16 127.6 35.3 268 14-290 18-290 (300)
197 3sjl_D Methylamine dehydrogena 99.5 3.1E-12 1.1E-16 133.6 29.7 268 20-298 37-359 (386)
198 3dsm_A Uncharacterized protein 99.5 4.9E-12 1.7E-16 132.8 30.5 250 16-279 44-319 (328)
199 3dsm_A Uncharacterized protein 99.5 2.3E-12 7.9E-17 135.3 27.5 252 36-298 16-298 (328)
200 2z2n_A Virginiamycin B lyase; 99.5 7.9E-11 2.7E-15 122.0 38.3 235 56-298 13-251 (299)
201 1yr2_A Prolyl oligopeptidase; 99.5 9.5E-13 3.2E-17 155.0 25.9 242 14-262 161-443 (741)
202 1yr2_A Prolyl oligopeptidase; 99.5 3.1E-12 1.1E-16 150.6 29.3 261 24-291 115-426 (741)
203 3sjl_D Methylamine dehydrogena 99.5 6.9E-12 2.4E-16 130.9 26.7 257 20-282 82-384 (386)
204 3c75_H MADH, methylamine dehyd 99.5 1.8E-11 6.1E-16 130.4 28.6 264 25-298 82-398 (426)
205 2mad_H Methylamine dehydrogena 99.5 1.6E-10 5.4E-15 122.9 35.5 238 20-267 70-357 (373)
206 3hrp_A Uncharacterized protein 99.5 3.1E-11 1.1E-15 130.3 29.6 235 16-258 131-408 (409)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.7E-11 9.1E-16 126.7 28.0 239 14-260 16-299 (314)
208 2qc5_A Streptogramin B lactona 99.4 8.2E-10 2.8E-14 114.3 37.7 234 56-297 18-255 (300)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 7.6E-11 2.6E-15 123.2 28.8 235 56-297 16-294 (314)
210 3g4e_A Regucalcin; six bladed 99.4 4.5E-10 1.5E-14 116.0 34.1 229 57-292 12-262 (297)
211 3iuj_A Prolyl endopeptidase; h 99.4 2.8E-11 9.5E-16 141.0 27.4 245 12-263 125-408 (693)
212 3g4e_A Regucalcin; six bladed 99.4 3.5E-10 1.2E-14 116.9 29.0 229 13-249 10-261 (297)
213 3hrp_A Uncharacterized protein 99.4 5.2E-10 1.8E-14 120.8 31.1 233 59-297 132-405 (409)
214 3c75_H MADH, methylamine dehyd 99.3 1.2E-10 4.3E-15 124.0 24.2 240 20-267 122-409 (426)
215 4a2l_A BT_4663, two-component 99.3 3.5E-07 1.2E-11 108.5 56.2 421 18-490 175-656 (795)
216 1xip_A Nucleoporin NUP159; bet 99.3 2.6E-11 8.8E-16 127.3 17.3 172 59-248 39-232 (388)
217 1xip_A Nucleoporin NUP159; bet 99.3 2.9E-11 1E-15 126.9 17.2 166 17-198 39-226 (388)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 2.2E-09 7.7E-14 112.3 31.7 223 60-293 51-293 (326)
219 2ghs_A AGR_C_1268P; regucalcin 99.3 2.3E-09 7.8E-14 112.3 30.0 223 16-250 49-292 (326)
220 3dr2_A Exported gluconolactona 99.3 6.1E-10 2.1E-14 115.6 24.6 228 11-251 40-298 (305)
221 3dr2_A Exported gluconolactona 99.3 1.5E-09 5.2E-14 112.6 26.8 237 49-298 36-303 (305)
222 2qe8_A Uncharacterized protein 99.3 1.6E-10 5.3E-15 122.2 19.2 261 16-295 17-314 (343)
223 3iuj_A Prolyl endopeptidase; h 99.3 8.2E-10 2.8E-14 128.6 26.8 229 56-292 127-391 (693)
224 4a2l_A BT_4663, two-component 99.2 6.5E-07 2.2E-11 106.1 52.0 445 15-490 87-611 (795)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.2 4.4E-08 1.5E-12 105.0 36.4 256 27-298 53-333 (376)
226 1mda_H Methylamine dehydrogena 99.2 7.5E-10 2.6E-14 116.1 21.7 256 26-299 30-343 (368)
227 1yiq_A Quinohemoprotein alcoho 99.2 6.4E-09 2.2E-13 120.0 30.7 267 27-298 70-501 (689)
228 1mda_H Methylamine dehydrogena 99.2 5.4E-10 1.8E-14 117.1 18.2 245 20-281 69-366 (368)
229 3v9f_A Two-component system se 99.2 1.6E-05 5.6E-10 93.9 58.4 429 15-490 18-521 (781)
230 1kb0_A Quinohemoprotein alcoho 99.2 1.2E-08 3.9E-13 117.6 29.7 266 27-298 77-503 (677)
231 1npe_A Nidogen, entactin; glyc 99.2 8.5E-08 2.9E-12 97.1 32.8 252 27-284 1-263 (267)
232 3v9f_A Two-component system se 99.1 1.1E-05 3.6E-10 95.5 55.6 450 16-490 115-653 (781)
233 3hxj_A Pyrrolo-quinoline quino 99.1 4.2E-10 1.4E-14 118.4 15.5 299 20-381 24-322 (330)
234 1yiq_A Quinohemoprotein alcoho 99.1 1.1E-08 3.8E-13 118.0 27.5 256 27-288 121-534 (689)
235 3hxj_A Pyrrolo-quinoline quino 99.1 1.3E-09 4.4E-14 114.6 17.6 261 16-298 60-320 (330)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.1 4.6E-08 1.6E-12 104.8 29.2 257 26-298 102-374 (376)
237 1kb0_A Quinohemoprotein alcoho 99.1 1.5E-08 5.3E-13 116.6 26.6 257 27-288 128-536 (677)
238 2hz6_A Endoplasmic reticulum t 99.0 9.3E-11 3.2E-15 124.9 4.4 190 68-270 8-202 (369)
239 2hz6_A Endoplasmic reticulum t 99.0 1.3E-10 4.4E-15 123.9 4.6 255 26-297 8-274 (369)
240 2qe8_A Uncharacterized protein 99.0 1.8E-08 6.3E-13 106.2 19.6 227 13-257 64-318 (343)
241 2ece_A 462AA long hypothetical 99.0 2.7E-07 9.1E-12 96.8 27.4 248 38-290 44-399 (462)
242 1npe_A Nidogen, entactin; glyc 99.0 1.1E-06 3.8E-11 88.8 31.2 221 16-241 36-262 (267)
243 2ece_A 462AA long hypothetical 98.9 8.6E-07 2.9E-11 93.0 27.2 219 25-248 93-399 (462)
244 1fwx_A Nitrous oxide reductase 98.8 1.9E-07 6.5E-12 101.6 21.5 256 30-291 18-407 (595)
245 2iwa_A Glutamine cyclotransfer 98.8 1E-06 3.5E-11 86.8 23.8 204 7-219 11-238 (266)
246 3v64_C Agrin; beta propeller, 98.8 7.7E-06 2.6E-10 85.9 31.9 249 15-269 33-284 (349)
247 1kv9_A Type II quinohemoprotei 98.8 1.9E-06 6.5E-11 99.0 28.7 266 27-298 66-484 (668)
248 3v65_B Low-density lipoprotein 98.8 6.5E-06 2.2E-10 87.8 31.0 255 19-279 80-337 (386)
249 2ad6_A Methanol dehydrogenase 98.8 8.3E-06 2.8E-10 91.6 33.2 266 27-298 62-490 (571)
250 3s94_A LRP-6, low-density lipo 98.8 0.00065 2.2E-08 76.8 48.1 239 27-269 9-252 (619)
251 1kv9_A Type II quinohemoprotei 98.7 2.5E-06 8.5E-11 98.1 28.0 253 27-284 117-513 (668)
252 1w6s_A Methanol dehydrogenase 98.7 1.5E-05 5E-10 89.5 32.9 268 27-298 62-499 (599)
253 1fwx_A Nitrous oxide reductase 98.7 3.6E-07 1.2E-11 99.4 18.9 223 21-249 90-407 (595)
254 2iwa_A Glutamine cyclotransfer 98.7 3.6E-06 1.2E-10 83.0 24.4 192 90-291 10-225 (266)
255 3nol_A Glutamine cyclotransfer 98.7 8.1E-06 2.8E-10 79.3 25.2 192 91-292 33-245 (262)
256 1ijq_A LDL receptor, low-densi 98.7 6.8E-05 2.3E-09 77.4 34.0 236 28-268 2-246 (316)
257 2p4o_A Hypothetical protein; p 98.6 1.9E-05 6.6E-10 81.3 28.9 236 48-293 23-279 (306)
258 3nol_A Glutamine cyclotransfer 98.6 2.4E-06 8.1E-11 83.0 20.2 190 7-205 33-243 (262)
259 1flg_A Protein (quinoprotein e 98.6 7.6E-05 2.6E-09 83.9 35.8 267 27-298 68-512 (582)
260 2ad6_A Methanol dehydrogenase 98.6 8.3E-06 2.8E-10 91.7 27.9 255 27-287 115-522 (571)
261 2fp8_A Strictosidine synthase; 98.6 1.1E-05 3.7E-10 84.0 26.9 234 16-259 19-312 (322)
262 3s94_A LRP-6, low-density lipo 98.6 0.0017 5.8E-08 73.4 51.5 393 15-425 39-516 (619)
263 1w6s_A Methanol dehydrogenase 98.6 9.5E-06 3.3E-10 91.0 26.7 259 21-286 111-530 (599)
264 2xe4_A Oligopeptidase B; hydro 98.6 9.8E-06 3.3E-10 94.8 27.9 245 13-262 170-460 (751)
265 1xi4_A Clathrin heavy chain; a 98.6 1.6E-07 5.6E-12 110.2 11.6 145 620-764 1053-1249(1630)
266 2p4o_A Hypothetical protein; p 98.6 4.7E-05 1.6E-09 78.4 29.2 228 16-251 32-279 (306)
267 3p5b_L Low density lipoprotein 98.6 0.00032 1.1E-08 74.9 36.1 248 27-279 83-339 (400)
268 1flg_A Protein (quinoprotein e 98.5 2.7E-05 9.1E-10 87.6 27.9 257 27-288 117-545 (582)
269 3mbr_X Glutamine cyclotransfer 98.5 3E-05 1E-09 74.7 23.7 191 6-205 10-222 (243)
270 3nok_A Glutaminyl cyclase; bet 98.5 1.4E-05 4.6E-10 77.6 20.8 189 7-205 45-253 (268)
271 3nok_A Glutaminyl cyclase; bet 98.5 4.3E-05 1.5E-09 74.1 24.2 181 101-291 56-254 (268)
272 3mbr_X Glutamine cyclotransfer 98.5 0.00012 4.2E-09 70.4 27.1 192 91-292 11-224 (243)
273 3v64_C Agrin; beta propeller, 98.5 0.00013 4.6E-09 76.3 30.1 207 16-226 73-283 (349)
274 3sov_A LRP-6, low-density lipo 98.5 0.00013 4.4E-09 75.1 29.2 237 28-270 5-248 (318)
275 3v65_B Low-density lipoprotein 98.5 8.9E-05 3E-09 78.9 28.8 208 16-227 116-327 (386)
276 3qqz_A Putative uncharacterize 98.5 8E-05 2.7E-09 72.9 25.5 202 10-216 21-251 (255)
277 1k3i_A Galactose oxidase precu 98.4 3.7E-06 1.3E-10 97.0 18.6 269 20-291 190-530 (656)
278 2fp8_A Strictosidine synthase; 98.4 0.00011 3.7E-09 76.3 27.4 215 59-279 20-291 (322)
279 3p5b_L Low density lipoprotein 98.4 0.00035 1.2E-08 74.7 31.8 219 14-236 110-338 (400)
280 1ijq_A LDL receptor, low-densi 98.4 0.00062 2.1E-08 70.2 32.3 208 15-226 29-246 (316)
281 2xbg_A YCF48-like protein; pho 98.4 0.00078 2.7E-08 69.8 33.0 268 15-297 35-317 (327)
282 3tc9_A Hypothetical hydrolase; 98.4 0.00014 4.7E-09 78.6 27.2 235 17-258 138-428 (430)
283 3qqz_A Putative uncharacterize 98.4 0.00044 1.5E-08 67.7 27.9 200 53-257 22-250 (255)
284 3sov_A LRP-6, low-density lipo 98.3 0.00055 1.9E-08 70.4 28.6 206 17-226 36-246 (318)
285 2xzh_A Clathrin heavy chain 1; 98.2 0.0038 1.3E-07 61.8 31.3 230 20-257 71-329 (365)
286 4a0p_A LRP6, LRP-6, low-densit 98.2 0.017 6E-07 65.1 59.8 200 16-221 37-240 (628)
287 3tc9_A Hypothetical hydrolase; 98.2 0.00051 1.7E-08 74.1 26.8 156 59-217 138-300 (430)
288 4a0p_A LRP6, LRP-6, low-densit 98.2 0.018 6.3E-07 65.0 65.3 244 27-277 6-254 (628)
289 4hw6_A Hypothetical protein, I 98.2 0.00062 2.1E-08 73.4 27.2 237 16-258 139-431 (433)
290 2xzh_A Clathrin heavy chain 1; 98.2 0.0072 2.5E-07 59.9 35.7 251 37-296 49-326 (365)
291 2xbg_A YCF48-like protein; pho 98.1 0.0071 2.4E-07 62.5 33.7 225 57-296 35-273 (327)
292 3m0c_C LDL receptor, low-densi 98.1 0.0021 7E-08 74.4 31.6 208 15-226 423-640 (791)
293 3m0c_C LDL receptor, low-densi 98.1 0.0036 1.2E-07 72.4 33.3 236 28-268 396-640 (791)
294 1k3i_A Galactose oxidase precu 98.1 0.00035 1.2E-08 80.4 24.3 227 61-292 189-476 (656)
295 1bpo_A Protein (clathrin); cla 98.1 0.0087 3E-07 61.8 30.9 204 20-231 70-302 (494)
296 2xe4_A Oligopeptidase B; hydro 98.0 0.00024 8.1E-09 83.0 22.3 193 59-258 175-398 (751)
297 4hw6_A Hypothetical protein, I 98.0 0.0015 5E-08 70.5 26.7 201 59-264 140-377 (433)
298 1bpo_A Protein (clathrin); cla 98.0 0.018 6E-07 59.5 36.7 251 36-295 47-324 (494)
299 1b89_A Protein (clathrin heavy 97.9 9.9E-06 3.4E-10 85.1 5.6 116 648-764 103-236 (449)
300 3kya_A Putative phosphatase; s 97.9 0.0051 1.7E-07 66.3 26.7 240 17-260 140-475 (496)
301 1n7d_A LDL receptor, low-densi 97.9 3.2E-05 1.1E-09 89.0 10.2 246 29-279 379-633 (699)
302 2ism_A Putative oxidoreductase 97.8 0.0088 3E-07 62.4 27.0 225 16-248 31-333 (352)
303 3ei3_A DNA damage-binding prot 97.8 0.14 4.8E-06 62.0 57.2 139 80-221 493-641 (1158)
304 3amr_A 3-phytase; beta-propell 97.8 0.0073 2.5E-07 61.3 24.5 195 68-269 39-273 (355)
305 3ei3_A DNA damage-binding prot 97.7 0.19 6.4E-06 60.9 60.7 260 24-292 470-757 (1158)
306 3kya_A Putative phosphatase; s 97.7 0.023 8E-07 61.1 28.5 200 60-262 141-411 (496)
307 1b89_A Protein (clathrin heavy 97.7 2.5E-05 8.5E-10 82.1 5.1 113 651-763 15-175 (449)
308 3ott_A Two-component system se 97.7 0.16 5.4E-06 59.4 54.6 445 15-490 62-583 (758)
309 1n7d_A LDL receptor, low-densi 97.7 6E-05 2E-09 86.8 8.3 217 16-236 406-632 (699)
310 3amr_A 3-phytase; beta-propell 97.6 0.021 7.1E-07 58.0 25.0 193 27-225 40-271 (355)
311 2p9w_A MAL S 1 allergenic prot 97.6 0.028 9.6E-07 56.5 25.6 155 18-174 15-215 (334)
312 2ism_A Putative oxidoreductase 97.6 0.021 7.1E-07 59.6 25.7 225 58-290 31-333 (352)
313 2p9w_A MAL S 1 allergenic prot 97.6 0.041 1.4E-06 55.3 25.8 206 53-262 8-267 (334)
314 3a9g_A Putative uncharacterize 97.6 0.032 1.1E-06 58.1 26.6 230 16-248 29-330 (354)
315 1xi4_A Clathrin heavy chain; a 97.5 0.0054 1.8E-07 73.0 21.8 271 2-281 6-310 (1630)
316 2vpj_A Kelch-like protein 12; 97.5 0.0051 1.7E-07 62.8 19.1 226 26-262 14-280 (301)
317 3mkq_B Coatomer subunit alpha; 97.5 0.0018 6.3E-08 58.2 13.1 134 591-750 8-142 (177)
318 3a9g_A Putative uncharacterize 97.4 0.099 3.4E-06 54.3 28.6 226 58-290 29-330 (354)
319 3ii7_A Kelch-like protein 7; p 97.4 0.026 8.9E-07 57.6 23.0 223 29-262 14-274 (306)
320 2g8s_A Glucose/sorbosone dehyd 97.4 0.073 2.5E-06 55.4 26.3 228 16-247 18-340 (353)
321 2xn4_A Kelch-like protein 2; s 97.4 0.012 4.1E-07 60.0 20.1 224 27-262 16-278 (302)
322 3ott_A Two-component system se 97.3 0.42 1.4E-05 55.7 60.4 444 15-490 21-542 (758)
323 2vpj_A Kelch-like protein 12; 97.0 0.024 8.2E-07 57.7 18.1 215 68-292 14-263 (301)
324 2g8s_A Glucose/sorbosone dehyd 97.0 0.4 1.4E-05 49.7 27.4 226 58-289 18-340 (353)
325 4asc_A Kelch repeat and BTB do 96.9 0.07 2.4E-06 54.6 20.6 213 37-262 13-279 (315)
326 1zgk_A Kelch-like ECH-associat 96.9 0.049 1.7E-06 55.5 18.9 224 26-262 24-289 (308)
327 3mkr_A Coatomer subunit epsilo 96.8 0.021 7E-07 57.8 14.9 101 595-695 41-157 (291)
328 3ii7_A Kelch-like protein 7; p 96.7 0.064 2.2E-06 54.6 18.6 212 70-293 13-258 (306)
329 2xn4_A Kelch-like protein 2; s 96.7 0.072 2.4E-06 54.1 18.9 212 70-293 17-262 (302)
330 3pbp_A Nucleoporin NUP82; beta 96.6 0.2 6.9E-06 51.9 20.5 143 23-168 28-206 (452)
331 2woz_A Kelch repeat and BTB do 96.5 0.21 7.1E-06 51.1 20.6 213 38-262 25-289 (318)
332 3s25_A Hypothetical 7-bladed b 96.5 0.83 2.8E-05 45.9 27.5 210 23-259 21-254 (302)
333 4asc_A Kelch repeat and BTB do 96.4 0.22 7.5E-06 50.8 20.0 208 72-291 8-252 (315)
334 1cru_A Protein (soluble quinop 96.4 1.4 4.7E-05 47.3 28.7 102 16-118 27-162 (454)
335 3gyz_A Chaperone protein IPGC; 96.4 0.012 4.1E-07 52.5 8.9 108 620-748 13-129 (151)
336 1zgk_A Kelch-like ECH-associat 96.4 0.068 2.3E-06 54.5 15.8 185 68-264 24-244 (308)
337 3sre_A PON1, serum paraoxonase 96.3 0.44 1.5E-05 49.0 21.4 195 59-259 51-297 (355)
338 3pbp_A Nucleoporin NUP82; beta 96.3 0.24 8.2E-06 51.3 18.7 147 65-214 28-208 (452)
339 3das_A Putative oxidoreductase 96.3 1.3 4.3E-05 45.4 29.6 229 56-289 30-325 (347)
340 2be1_A Serine/threonine-protei 96.2 0.71 2.4E-05 46.9 21.9 185 28-223 11-236 (339)
341 2pl2_A Hypothetical conserved 96.2 0.022 7.4E-07 54.7 10.3 33 649-681 49-86 (217)
342 4gyw_A UDP-N-acetylglucosamine 96.1 0.044 1.5E-06 62.9 13.7 131 620-758 13-167 (723)
343 2uvk_A YJHT; unknown function, 95.9 0.17 5.7E-06 52.8 16.5 232 26-265 19-347 (357)
344 4gyw_A UDP-N-acetylglucosamine 95.9 0.047 1.6E-06 62.7 12.9 44 651-694 21-69 (723)
345 3das_A Putative oxidoreductase 95.8 2 6.8E-05 43.9 27.9 229 15-248 31-326 (347)
346 3b7f_A Glycosyl hydrolase, BNR 95.8 1.9 6.4E-05 45.4 24.3 258 15-280 54-391 (394)
347 2woz_A Kelch repeat and BTB do 95.7 0.53 1.8E-05 48.0 18.9 175 80-263 25-234 (318)
348 3sre_A PON1, serum paraoxonase 95.7 2.3 7.7E-05 43.7 24.5 184 102-292 52-287 (355)
349 2xpi_A Anaphase-promoting comp 95.7 0.052 1.8E-06 61.4 12.1 148 601-748 285-466 (597)
350 3s25_A Hypothetical 7-bladed b 95.7 2.1 7E-05 43.0 23.7 175 21-218 58-255 (302)
351 1xnf_A Lipoprotein NLPI; TPR, 95.6 0.23 8E-06 49.0 15.5 44 651-694 55-103 (275)
352 2be1_A Serine/threonine-protei 95.6 0.31 1.1E-05 49.6 16.1 191 70-265 11-236 (339)
353 3vtx_A MAMA; tetratricopeptide 95.5 0.2 6.9E-06 46.0 13.5 45 650-694 16-65 (184)
354 2xpi_A Anaphase-promoting comp 95.4 0.032 1.1E-06 63.2 9.3 152 598-749 315-501 (597)
355 1tl2_A L10, protein (tachylect 95.3 0.25 8.6E-06 46.1 12.9 143 16-167 41-203 (236)
356 3gw4_A Uncharacterized protein 95.3 0.32 1.1E-05 45.3 14.6 41 655-695 49-93 (203)
357 2pl2_A Hypothetical conserved 95.3 0.19 6.5E-06 47.9 12.8 100 650-749 16-144 (217)
358 3ulq_A Response regulator aspa 95.2 0.21 7.2E-06 52.6 14.3 25 670-694 186-210 (383)
359 2uvk_A YJHT; unknown function, 95.2 0.36 1.2E-05 50.2 15.8 92 68-164 19-128 (357)
360 4ga2_A E3 SUMO-protein ligase 95.2 0.092 3.1E-06 46.6 9.5 46 649-694 41-91 (150)
361 3gw4_A Uncharacterized protein 95.0 0.22 7.4E-06 46.5 12.5 47 650-696 3-54 (203)
362 3vtx_A MAMA; tetratricopeptide 95.0 0.22 7.4E-06 45.8 12.2 47 648-694 48-99 (184)
363 3sbq_A Nitrous-oxide reductase 95.0 4.7 0.00016 43.4 24.6 255 30-290 73-453 (638)
364 3mkr_A Coatomer subunit epsilo 95.0 0.26 8.8E-06 49.6 13.6 126 622-755 107-253 (291)
365 4ga2_A E3 SUMO-protein ligase 95.0 0.078 2.7E-06 47.1 8.5 78 648-733 6-88 (150)
366 3as5_A MAMA; tetratricopeptide 94.9 0.25 8.6E-06 45.0 12.4 45 650-694 53-102 (186)
367 2zwa_A Leucine carboxyl methyl 94.9 0.86 2.9E-05 52.2 18.8 195 25-222 396-639 (695)
368 3lvg_A Clathrin heavy chain 1; 94.7 8.2E-05 2.8E-09 76.9 -13.2 114 651-764 37-198 (624)
369 2ho1_A Type 4 fimbrial biogene 94.7 0.25 8.7E-06 48.0 12.3 49 648-696 80-133 (252)
370 4gco_A Protein STI-1; structur 94.7 0.12 4.2E-06 44.1 8.7 44 650-693 24-72 (126)
371 2q7f_A YRRB protein; TPR, prot 94.7 0.21 7.2E-06 48.2 11.6 47 648-694 100-151 (243)
372 2y4t_A DNAJ homolog subfamily 94.7 0.54 1.8E-05 50.5 16.0 46 649-694 153-203 (450)
373 3hym_B Cell division cycle pro 94.6 0.1 3.6E-06 53.3 9.7 153 596-748 30-218 (330)
374 2fo7_A Synthetic consensus TPR 94.6 0.16 5.5E-06 43.2 9.5 45 650-694 12-61 (136)
375 3q15_A PSP28, response regulat 94.6 0.13 4.4E-06 54.2 10.5 25 670-694 184-208 (378)
376 2vgx_A Chaperone SYCD; alterna 94.6 0.25 8.5E-06 43.7 10.7 78 650-748 32-114 (148)
377 3mv2_B Coatomer subunit epsilo 94.6 0.38 1.3E-05 48.1 12.9 50 647-696 108-164 (310)
378 2xcb_A PCRH, regulatory protei 94.5 0.32 1.1E-05 42.4 11.2 78 650-748 29-111 (142)
379 2ho1_A Type 4 fimbrial biogene 94.4 0.25 8.7E-06 48.0 11.6 74 621-694 76-167 (252)
380 4i17_A Hypothetical protein; T 94.4 0.21 7.2E-06 47.9 10.8 27 668-694 42-68 (228)
381 2e2e_A Formate-dependent nitri 94.4 0.15 5E-06 46.6 9.1 47 649-695 20-71 (177)
382 1tl2_A L10, protein (tachylect 94.3 2.1 7.2E-05 40.0 16.2 174 111-296 4-204 (236)
383 4gcn_A Protein STI-1; structur 94.3 0.088 3E-06 45.1 6.9 43 651-693 20-67 (127)
384 4abn_A Tetratricopeptide repea 94.3 0.11 3.6E-06 56.8 9.2 51 647-697 110-166 (474)
385 3sz7_A HSC70 cochaperone (SGT) 94.3 0.36 1.2E-05 43.4 11.4 78 650-748 22-104 (164)
386 3hym_B Cell division cycle pro 94.3 0.53 1.8E-05 47.8 14.2 128 621-748 27-184 (330)
387 1hxi_A PEX5, peroxisome target 94.1 0.15 5.2E-06 43.1 8.0 79 649-748 27-110 (121)
388 1w3b_A UDP-N-acetylglucosamine 94.1 0.35 1.2E-05 50.9 12.7 75 620-694 105-195 (388)
389 2ifu_A Gamma-SNAP; membrane fu 94.1 0.14 4.8E-06 52.0 9.2 23 670-692 78-100 (307)
390 4gco_A Protein STI-1; structur 94.1 0.28 9.7E-06 41.8 9.8 27 669-695 14-40 (126)
391 1ouv_A Conserved hypothetical 94.1 0.52 1.8E-05 46.5 13.3 44 652-695 55-105 (273)
392 2ifu_A Gamma-SNAP; membrane fu 94.1 0.26 8.9E-06 50.0 11.1 28 730-763 162-189 (307)
393 2r5s_A Uncharacterized protein 94.0 0.32 1.1E-05 44.4 10.5 49 649-697 16-69 (176)
394 1fch_A Peroxisomal targeting s 93.9 0.22 7.7E-06 51.8 10.6 48 647-694 106-158 (368)
395 1ouv_A Conserved hypothetical 93.9 0.89 3.1E-05 44.8 14.6 77 620-696 42-142 (273)
396 1hh8_A P67PHOX, NCF-2, neutrop 93.9 0.39 1.3E-05 45.2 11.4 46 650-695 17-64 (213)
397 1qqe_A Vesicular transport pro 93.8 0.72 2.5E-05 46.2 13.6 46 650-695 48-104 (292)
398 1w3b_A UDP-N-acetylglucosamine 93.7 0.5 1.7E-05 49.6 13.0 130 620-749 173-331 (388)
399 3n71_A Histone lysine methyltr 93.7 0.14 4.7E-06 55.6 8.5 98 650-766 320-431 (490)
400 3b7f_A Glycosyl hydrolase, BNR 93.7 7.8 0.00027 40.5 26.7 213 28-247 23-296 (394)
401 3u4t_A TPR repeat-containing p 93.6 0.25 8.5E-06 48.8 9.7 47 648-694 46-100 (272)
402 4eqf_A PEX5-related protein; a 93.5 0.27 9.3E-06 51.2 10.3 47 648-694 186-239 (365)
403 1qqe_A Vesicular transport pro 93.5 0.57 1.9E-05 47.0 12.3 47 649-695 87-145 (292)
404 3upv_A Heat shock protein STI1 93.4 0.41 1.4E-05 40.5 9.6 78 650-748 15-97 (126)
405 3ulq_A Response regulator aspa 93.3 1.1 3.8E-05 46.9 14.8 47 649-695 194-251 (383)
406 3qhy_B Beta-lactamase inhibito 93.3 1.8 6E-05 43.0 15.2 222 17-260 25-246 (282)
407 2vq2_A PILW, putative fimbrial 93.2 0.63 2.2E-05 43.9 11.7 44 651-694 20-68 (225)
408 3gyz_A Chaperone protein IPGC; 93.2 0.66 2.3E-05 41.0 10.7 83 668-758 36-126 (151)
409 2q7f_A YRRB protein; TPR, prot 93.1 1.4 4.6E-05 42.3 14.1 46 650-695 68-118 (243)
410 2zwa_A Leucine carboxyl methyl 93.0 2.6 9E-05 48.1 18.2 194 67-264 396-639 (695)
411 3sz7_A HSC70 cochaperone (SGT) 93.0 0.72 2.5E-05 41.3 11.0 58 668-733 11-68 (164)
412 1a17_A Serine/threonine protei 92.9 0.49 1.7E-05 42.2 9.8 46 650-695 24-74 (166)
413 2y4t_A DNAJ homolog subfamily 92.9 0.56 1.9E-05 50.4 11.9 76 621-696 31-122 (450)
414 3ma5_A Tetratricopeptide repea 92.9 0.84 2.9E-05 36.7 10.2 72 666-764 5-76 (100)
415 3cv0_A Peroxisome targeting si 92.8 0.95 3.2E-05 45.8 13.1 46 649-694 148-198 (327)
416 3qou_A Protein YBBN; thioredox 92.8 0.79 2.7E-05 45.8 12.0 47 650-696 128-179 (287)
417 3uq3_A Heat shock protein STI1 92.7 0.15 5.1E-06 49.8 6.4 101 648-748 47-164 (258)
418 3as5_A MAMA; tetratricopeptide 92.7 0.67 2.3E-05 42.0 10.6 46 650-695 19-69 (186)
419 2vq2_A PILW, putative fimbrial 92.7 0.99 3.4E-05 42.5 12.2 46 650-695 53-104 (225)
420 1cru_A Protein (soluble quinop 92.5 13 0.00043 39.7 30.2 104 58-162 27-162 (454)
421 2c2l_A CHIP, carboxy terminus 92.5 1.5 5E-05 43.7 13.5 78 650-748 15-97 (281)
422 2kck_A TPR repeat; tetratricop 92.5 0.5 1.7E-05 38.5 8.6 46 650-695 17-67 (112)
423 2wg3_C Hedgehog-interacting pr 92.5 13 0.00044 39.7 25.2 231 16-248 14-354 (463)
424 3ieg_A DNAJ homolog subfamily 92.4 0.46 1.6E-05 48.9 10.2 48 647-694 162-214 (359)
425 3ieg_A DNAJ homolog subfamily 92.4 0.68 2.3E-05 47.6 11.4 50 647-696 128-182 (359)
426 3urz_A Uncharacterized protein 92.4 0.4 1.4E-05 45.2 8.7 48 648-695 63-115 (208)
427 2lni_A Stress-induced-phosphop 92.3 0.71 2.4E-05 39.1 9.6 46 649-694 26-76 (133)
428 2qfc_A PLCR protein; TPR, HTH, 92.2 0.63 2.1E-05 46.7 10.4 46 650-695 126-182 (293)
429 4a1s_A PINS, partner of inscut 92.1 0.29 9.9E-06 52.0 8.3 13 599-611 59-71 (411)
430 3qww_A SET and MYND domain-con 92.1 0.69 2.4E-05 49.2 10.9 96 650-766 309-420 (433)
431 3q49_B STIP1 homology and U bo 92.1 0.76 2.6E-05 39.3 9.6 77 650-747 20-101 (137)
432 3ro3_A PINS homolog, G-protein 92.1 1 3.4E-05 39.6 10.7 41 655-695 32-76 (164)
433 2ond_A Cleavage stimulation fa 91.8 0.36 1.2E-05 49.0 8.2 26 669-694 100-125 (308)
434 3ma5_A Tetratricopeptide repea 91.8 0.54 1.8E-05 37.9 7.7 67 650-722 18-89 (100)
435 3upv_A Heat shock protein STI1 91.7 1.1 3.8E-05 37.7 10.1 82 668-757 4-93 (126)
436 3uq3_A Heat shock protein STI1 91.7 0.51 1.7E-05 45.8 8.9 46 650-695 16-65 (258)
437 2pm7_A Protein WEB1, protein t 91.7 0.12 4.1E-06 53.9 4.2 93 733-825 153-277 (399)
438 1elw_A TPR1-domain of HOP; HOP 91.5 0.89 3E-05 37.3 9.1 45 650-694 15-64 (118)
439 3cv0_A Peroxisome targeting si 91.4 0.61 2.1E-05 47.3 9.5 48 647-694 180-232 (327)
440 2pzi_A Probable serine/threoni 91.4 0.22 7.5E-06 57.1 6.6 103 647-750 441-561 (681)
441 4a1s_A PINS, partner of inscut 91.3 0.12 4.2E-06 54.9 4.2 14 670-683 168-181 (411)
442 2vsy_A XCC0866; transferase, g 91.3 0.84 2.9E-05 51.0 11.2 45 650-694 34-83 (568)
443 4eqf_A PEX5-related protein; a 91.3 0.41 1.4E-05 49.8 8.2 101 649-749 75-203 (365)
444 2xcb_A PCRH, regulatory protei 91.2 2 6.7E-05 37.2 11.4 83 669-759 19-109 (142)
445 2hr2_A Hypothetical protein; a 91.2 0.63 2.2E-05 41.2 7.8 91 651-759 23-132 (159)
446 4gcn_A Protein STI-1; structur 91.2 0.47 1.6E-05 40.4 7.0 80 669-748 9-108 (127)
447 2vsy_A XCC0866; transferase, g 91.1 0.64 2.2E-05 52.0 9.9 96 653-748 3-116 (568)
448 3fp2_A TPR repeat-containing p 91.1 0.75 2.6E-05 50.8 10.5 125 624-748 251-403 (537)
449 4abn_A Tetratricopeptide repea 91.0 0.24 8.2E-06 54.0 6.1 109 620-733 141-281 (474)
450 2lni_A Stress-induced-phosphop 90.9 0.8 2.7E-05 38.7 8.4 54 668-721 16-77 (133)
451 3rkv_A Putative peptidylprolyl 90.8 0.7 2.4E-05 41.2 8.1 27 669-695 12-38 (162)
452 1wao_1 Serine/threonine protei 90.7 0.39 1.3E-05 52.2 7.4 48 648-695 15-67 (477)
453 3sf4_A G-protein-signaling mod 90.6 0.13 4.6E-06 54.3 3.6 14 670-683 129-142 (406)
454 2vyi_A SGTA protein; chaperone 90.6 1.3 4.4E-05 37.1 9.4 78 650-748 23-105 (131)
455 3rjv_A Putative SEL1 repeat pr 90.6 2 6.7E-05 40.4 11.5 41 653-694 32-79 (212)
456 1elw_A TPR1-domain of HOP; HOP 90.5 1.4 4.9E-05 35.9 9.5 28 668-695 4-31 (118)
457 3qky_A Outer membrane assembly 90.5 0.86 2.9E-05 44.6 9.2 19 730-748 155-173 (261)
458 1xnf_A Lipoprotein NLPI; TPR, 90.5 1.2 4E-05 43.7 10.3 100 650-749 16-137 (275)
459 3sf4_A G-protein-signaling mod 90.4 0.54 1.8E-05 49.6 8.1 94 655-748 163-292 (406)
460 3q49_B STIP1 homology and U bo 90.4 1.9 6.4E-05 36.7 10.4 59 666-732 7-65 (137)
461 3qwp_A SET and MYND domain-con 90.4 1.3 4.3E-05 47.2 10.8 94 651-766 299-409 (429)
462 1na0_A Designed protein CTPR3; 90.2 1.5 5.1E-05 36.3 9.4 45 650-694 20-69 (125)
463 3qhy_B Beta-lactamase inhibito 90.1 8.2 0.00028 38.1 16.0 218 59-298 25-242 (282)
464 2kck_A TPR repeat; tetratricop 90.1 0.5 1.7E-05 38.5 6.1 28 668-695 6-33 (112)
465 1fch_A Peroxisomal targeting s 90.1 1.9 6.4E-05 44.5 12.0 102 646-747 188-309 (368)
466 3ro2_A PINS homolog, G-protein 90.1 0.19 6.6E-06 51.2 4.1 47 648-694 92-169 (338)
467 4f3v_A ESX-1 secretion system 90.0 1.1 3.8E-05 44.1 9.2 115 598-749 112-234 (282)
468 2h6f_A Protein farnesyltransfe 90.0 1.1 3.7E-05 46.9 9.8 104 622-733 103-223 (382)
469 2vgx_A Chaperone SYCD; alterna 89.8 2 6.7E-05 37.6 10.1 82 668-757 21-110 (148)
470 2kat_A Uncharacterized protein 89.8 2.5 8.4E-05 34.7 10.3 72 666-764 17-88 (115)
471 3q15_A PSP28, response regulat 89.6 2 6.8E-05 44.8 11.7 48 649-696 192-250 (378)
472 4g26_A Pentatricopeptide repea 89.6 0.61 2.1E-05 50.9 7.8 99 651-749 82-201 (501)
473 3edt_B KLC 2, kinesin light ch 89.6 0.49 1.7E-05 46.7 6.6 29 668-696 85-113 (283)
474 2xev_A YBGF; tetratricopeptide 89.3 1.8 6.3E-05 36.3 9.3 45 650-694 13-65 (129)
475 2dba_A Smooth muscle cell asso 89.1 2.2 7.6E-05 36.7 10.0 47 648-694 37-91 (148)
476 3k9i_A BH0479 protein; putativ 88.9 0.77 2.6E-05 38.2 6.4 77 652-749 3-87 (117)
477 2pzi_A Probable serine/threoni 88.8 3 0.0001 47.6 13.3 56 640-695 392-460 (681)
478 3urz_A Uncharacterized protein 88.7 1.1 3.7E-05 42.1 8.0 78 650-748 15-113 (208)
479 1ihg_A Cyclophilin 40; ppiase 88.7 1.5 5E-05 45.8 9.7 38 653-696 214-251 (370)
480 2dba_A Smooth muscle cell asso 88.7 1.8 6.1E-05 37.4 9.0 31 667-697 27-57 (148)
481 3u3w_A Transcriptional activat 88.6 1.1 3.9E-05 44.7 8.6 46 650-695 126-182 (293)
482 1na3_A Designed protein CTPR2; 88.4 1.8 6.1E-05 33.4 8.0 46 650-695 20-70 (91)
483 2vyi_A SGTA protein; chaperone 87.7 3.5 0.00012 34.3 10.1 82 668-757 12-101 (131)
484 3u3w_A Transcriptional activat 87.7 2 6.8E-05 42.9 9.7 111 647-763 83-230 (293)
485 2fbn_A 70 kDa peptidylprolyl i 87.6 1.6 5.3E-05 40.5 8.3 25 670-694 40-64 (198)
486 1hz4_A MALT regulatory protein 87.4 1.2 4.1E-05 46.3 8.2 47 648-694 102-161 (373)
487 1na0_A Designed protein CTPR3; 87.3 3.9 0.00013 33.5 10.1 28 668-695 9-36 (125)
488 4i17_A Hypothetical protein; T 87.3 2.3 7.9E-05 40.3 9.5 82 666-747 5-100 (228)
489 1elr_A TPR2A-domain of HOP; HO 87.3 2.2 7.4E-05 35.7 8.4 85 650-748 15-104 (131)
490 1hxi_A PEX5, peroxisome target 87.2 1.9 6.5E-05 36.1 7.8 55 670-732 19-73 (121)
491 3nf1_A KLC 1, kinesin light ch 87.1 0.66 2.3E-05 46.6 5.7 27 669-695 70-96 (311)
492 2h6f_A Protein farnesyltransfe 87.0 2.3 7.9E-05 44.4 9.9 94 621-722 136-246 (382)
493 4g1t_A Interferon-induced prot 87.0 1.6 5.3E-05 47.2 9.0 49 647-695 221-274 (472)
494 2hr2_A Hypothetical protein; a 86.9 3.3 0.00011 36.6 9.2 27 669-695 12-38 (159)
495 3u4t_A TPR repeat-containing p 86.9 2.7 9.4E-05 41.0 10.1 99 599-697 14-137 (272)
496 3edt_B KLC 2, kinesin light ch 86.8 0.69 2.4E-05 45.5 5.6 51 647-697 93-156 (283)
497 1p5q_A FKBP52, FK506-binding p 86.7 2.1 7.1E-05 43.9 9.3 60 668-748 196-255 (336)
498 1a17_A Serine/threonine protei 86.7 3.7 0.00013 36.1 10.1 28 668-695 13-40 (166)
499 1kt0_A FKBP51, 51 kDa FK506-bi 86.5 0.55 1.9E-05 50.7 5.0 109 641-749 236-377 (457)
500 3rkv_A Putative peptidylprolyl 86.4 2 6.7E-05 38.2 7.9 59 669-748 64-122 (162)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.7e-94 Score=864.70 Aligned_cols=790 Identities=47% Similarity=0.880 Sum_probs=714.8
Q ss_pred ChhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002881 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (871)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 82 (871)
|++++++.+.+|+++|++++|||++++|++++.+|.|+|||+.+++.+..+..|..+|++++|+|++++|++|+.||.|+
T Consensus 1 m~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CCcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
+||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||++++......+.+|...|.+++|+|.+++.+++++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999876778888999999999999996678999999
Q ss_pred CCCcEEEEECCCCCCeEEEecCC-CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC
Q 002881 163 LDRTIKIWNLGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~ 241 (871)
.||.|++||+.++.....+..+. .++.+++|+|.+++.++++++.||.|++||+.+++++..+.+|...|++++|+|++
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 99999999999888888777655 88999999995444589999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC--eEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEee
Q 002881 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR--RIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKH 319 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 319 (871)
+++++++.||.|++||+.+++....+..+...+++++|+|+++ .++++++++.+.++.....+...+++++..++...
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320 (814)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECc
Confidence 9999999999999999999999999999999999999999987 57888888888888888888999999998888643
Q ss_pred cc-----eEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCcCceeE
Q 002881 320 NE-----IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALE 394 (871)
Q Consensus 320 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~ 394 (871)
.. +....+.. .+....+.........+......++.++|+|+|+++++++++.+.+|+...+.....+.+.+
T Consensus 321 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i~~ 397 (814)
T 3mkq_A 321 KNAAASDIFTAVIRG---NEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQD 397 (814)
T ss_dssp TTSCTTCEEEEECCS---CCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEEEEECSE
T ss_pred ccccceeeeeeeccc---ccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccCCCceEE
Confidence 22 22222111 12234555555555566677778899999999999999999999999988888777889999
Q ss_pred EEEecCCcEEEEec-CCeEEEeecccccc--eeeecCccceeeecCcEEEEEeCCeEEEEeccCCcEEEEEEcceeEEEE
Q 002881 395 FVWSSDGEYAVRES-SSKIKIFSKNFQEK--RSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYW 471 (871)
Q Consensus 395 ~~~s~~~~~~~~~~-~~~i~i~~~~~~~~--~~~~~~~s~~~i~~~~~La~~~~~~v~~~d~~~~~~~~~~~~~i~~i~~ 471 (871)
++|+|+|+++++.+ ++.|++|+ .+... ......++|++++++.++....++.|++||+++++.+..+......+.|
T Consensus 398 ~~~spdg~~la~~~~~g~v~l~~-~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~v~~ 476 (814)
T 3mkq_A 398 FVWGPDSNSYALIDETGQIKYYK-NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIW 476 (814)
T ss_dssp EEECTTSSCEEEECTTCCEEEEE-TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCcEEEEE-CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCCEEEE
Confidence 99999998877776 78999995 33322 2233488999655445554455559999999999999998877779999
Q ss_pred cCCCCEEEEE------eCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEeccEEEEEccCCeEE
Q 002881 472 ADSGDLVAIA------SDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLN 545 (871)
Q Consensus 472 s~~~~~la~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~ 545 (871)
||+|++|+++ +++..+++|++.+.....+..+...+++|.+..|..+.++...+.++.|++++++|.+..+++.
T Consensus 477 s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~ 556 (814)
T 3mkq_A 477 SDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLN 556 (814)
T ss_dssp CTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEE
T ss_pred cCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEE
Confidence 9999999999 8999999999999888887777666678888899998888889999999999999999889999
Q ss_pred EEECCeEeEEEecccceEEEEEeeeCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhh-hCCCCC-cchhHHHH
Q 002881 546 YCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANE-ILPSIP-KEHHNSVA 623 (871)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~-~l~~i~-~~~~~~~~ 623 (871)
|+.+++...+.+++.+++++++.+++++++++|+++++..|.++...++|+.++.+++++.|.+ .++.++ ......++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~ 636 (814)
T 3mkq_A 557 YFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIA 636 (814)
T ss_dssp EEETTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHH
T ss_pred EEeCCeeEEEEECCccEEEEEEEecCCEEEEEcCCCCEEEEEECcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 998999 88889999
Q ss_pred HHHHhCCChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHH
Q 002881 624 RFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLL 703 (871)
Q Consensus 624 ~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 703 (871)
+|+++.++++.|+++.++|.++|++++++|+|++|+++++.++++++|++||++|+++++++.|++||.+++|++++.+|
T Consensus 637 ~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 716 (814)
T 3mkq_A 637 RFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLL 716 (814)
T ss_dssp HHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCch--HHHHHHHHHHHhhhh
Q 002881 704 YSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSK--VSEIVAIWRKDLQKV 781 (871)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~--~~~~~~~~~~~L~~~ 781 (871)
|...++.+++.++++++...|+++.|+.+|+++|++++|+++|++++||++|+++|++|+|++ ++.++++|+++|...
T Consensus 717 ~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~ 796 (814)
T 3mkq_A 717 HSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILN 796 (814)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999887
Q ss_pred Ch-hhhhhcCCCccCC
Q 002881 782 NP-KAAESLADPEEYS 796 (871)
Q Consensus 782 ~~-~~a~~l~~~~~~~ 796 (871)
++ ++|++|++|+++|
T Consensus 797 ~~~~~a~~l~~~~~~~ 812 (814)
T 3mkq_A 797 GKNTVSERVCGAEGLP 812 (814)
T ss_dssp TCHHHHTTBCCGGGCC
T ss_pred cchhHHHhhCCcccCC
Confidence 64 7899999999886
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-48 Score=451.68 Aligned_cols=509 Identities=22% Similarity=0.349 Sum_probs=406.9
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
-+++|+||++.|++++|||||++||+|+.|+.|+||| .+++.++++.+|..+|++++|+|++++|++++.|+.|++||.
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 3457899999999999999999999999999999999 578889999999999999999999999999999999999996
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc----------------------------------
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW---------------------------------- 132 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------------- 132 (871)
+++.+..+.+|...|.+++|+|++++|++++.|+.+++|+.....
T Consensus 87 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (577)
T 2ymu_A 87 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred -CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceec
Confidence 578889999999999999999999999999999999999975431
Q ss_pred -----eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC
Q 002881 133 -----MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 133 -----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
........|...|.++.++| ++..+++++.||.|++||. +++....+..|...|.+++|+|++. ++++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~~ 241 (577)
T 2ymu_A 166 WNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ--TIASASD 241 (577)
T ss_dssp ECTTSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSS--CEEEEET
T ss_pred cccceeeeeeccCCCcceeeeeecC-CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCC--EEEEEeC
Confidence 11122335667788999999 7889999999999999996 5667788889999999999999887 6999999
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEE
Q 002881 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 287 (871)
|+.|++||. +++.+..+.+|...|.+++|+|+++.+++++.|+.|++|+. +++....+..|...|++++|+|+++.++
T Consensus 242 d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 242 DKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp TSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEE
Confidence 999999996 47788899999999999999999999999999999999995 5677888888999999999999999999
Q ss_pred EEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCE
Q 002881 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (871)
Q Consensus 288 ~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 367 (871)
+++.||.+++|......+.. +..+...+..++++|+|++
T Consensus 320 t~~~d~~i~~w~~~~~~~~~-----------------------------------------~~~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQHLQT-----------------------------------------LTGHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp EEETTSCEEEEETTSCEEEE-----------------------------------------ECCCSSCEEEEEECTTSSE
T ss_pred EEeCCCeEEEEeCCCCeeEE-----------------------------------------EeCCCCCEEEEEECCCCCE
Confidence 99999999998432221111 1122234568999999999
Q ss_pred EEEEc-CCcEEEEEeecc----cccCcCceeEEEEecCCcEEEEec-CCeEEEeecccccceeee--------cCcccee
Q 002881 368 VVVCG-DGEYIIYTALAW----RNRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVR--------PTFSAER 433 (871)
Q Consensus 368 lav~~-~~~~~i~~~~~~----~~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~~~~~~--------~~~s~~~ 433 (871)
+++++ ++.+.+|+.... ...+...+.+++|+|+|+++++++ ++.|++|+.+.+....+. ..|+|+
T Consensus 359 l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 437 (577)
T 2ymu_A 359 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD- 437 (577)
T ss_dssp EEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTT-
T ss_pred EEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCC-
Confidence 99887 788999974321 123456789999999999888776 799999996654332222 156777
Q ss_pred eecCcEEEEEeCC-eEEEEeccCCcEEEEEE---cceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCcc
Q 002881 434 IYGGTLLAMCSND-FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQ 509 (871)
Q Consensus 434 i~~~~~La~~~~~-~v~~~d~~~~~~~~~~~---~~i~~i~~s~~~~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 509 (871)
+.+|++++.+ .|.+||. +++.+..+. ..|.+++|+|++++|++++.++.+.+|...
T Consensus 438 ---~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~---------------- 497 (577)
T 2ymu_A 438 ---DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---------------- 497 (577)
T ss_dssp ---SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT----------------
T ss_pred ---CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC----------------
Confidence 8999999988 9999996 456666655 489999999999999999999999887210
Q ss_pred ccccceeeeeeeeeEEEeeEEec--cEEEEEccCCeEEEEE--CCeEeEEEecccceEEEEEeeeCCEEEEEecCCceEE
Q 002881 510 GVEDAFELLHETNERVRTGLWVG--DCFIYNNSSWRLNYCV--GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMG 585 (871)
Q Consensus 510 ~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 585 (871)
+. ....+..-...|.++.|.. ..++.....+.+..+- +.....+.....++.-+.+.|++..|+-...++.+..
T Consensus 498 ~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 498 GQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp SC--EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CC--EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 00 0111111134566677764 4565555556666554 2233334444556666777788888888888888877
Q ss_pred EE
Q 002881 586 YT 587 (871)
Q Consensus 586 ~~ 587 (871)
|+
T Consensus 576 Wd 577 (577)
T 2ymu_A 576 WN 577 (577)
T ss_dssp EC
T ss_pred eC
Confidence 63
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-49 Score=456.24 Aligned_cols=455 Identities=18% Similarity=0.242 Sum_probs=367.6
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeCCCCEEEEEeCC----Ce
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADD----MF 80 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~ 80 (871)
....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++ ....+..|.++|.+++|+|+++.|++++.+ +.
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 455688999999999999999999999999999999987543 456778899999999999999999998875 36
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
|++|| +++....+.+|...|.+++|+|+++ .|++|+.|+.|++||..+. .....+.+|...|.+++|+| ++++|+
T Consensus 131 v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fsp-dg~~la 206 (611)
T 1nr0_A 131 VFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNP-DGSLFA 206 (611)
T ss_dssp EEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred EEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECC-CCCEEE
Confidence 77776 5667778889999999999999987 6999999999999999876 67778899999999999999 889999
Q ss_pred EEECCCcEEEEECCCCCCeEEEe-------cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE---------
Q 002881 160 SASLDRTIKIWNLGSPDPNFTLD-------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--------- 223 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--------- 223 (871)
+++.|++|++||+.+++....+. +|...|.+++|+|++. +|++++.|+.|++||+.+++++.
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--KIASASADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC--EEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 99999999999999888777773 7999999999999887 79999999999999998776543
Q ss_pred ----------------------------------EecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-e
Q 002881 224 ----------------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-N 268 (871)
Q Consensus 224 ----------------------------------~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~ 268 (871)
.+.+|...|++++|+|++++|++++.||+|++||+.+++....+ .
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~ 364 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 364 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc
Confidence 33578889999999999999999999999999999998877655 4
Q ss_pred cCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCc----------------ceEEEeCCCcEE-EEeecceEEEEEeecC
Q 002881 269 YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE----------------PVASMDNSGKII-WAKHNEIQTVNIKSVG 331 (871)
Q Consensus 269 ~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 331 (871)
.|...+.+++|++++ .+++++.|+.+++|..... ...++.+++..+ ......+.+++
T Consensus 365 ~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~----- 438 (611)
T 1nr0_A 365 VHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS----- 438 (611)
T ss_dssp SCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE-----
T ss_pred CCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe-----
Confidence 577889999999765 6889999999999964321 122344454332 22222222221
Q ss_pred cceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc------ccCcCceeEEEEecCCcEE
Q 002881 332 ADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR------NRSFGSALEFVWSSDGEYA 404 (871)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~------~~~~~~~~~~~~s~~~~~~ 404 (871)
.++ .. .+. ....+.+++|+|||++|++++ |+.+.+|+..... ..+...+.+++|+|+|+++
T Consensus 439 ------~~~-~~----~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~l 506 (611)
T 1nr0_A 439 ------HGK-LT----EVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 506 (611)
T ss_dssp ------TTE-EE----EEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ------CCc-ee----eee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEE
Confidence 111 10 111 234567899999999999988 8899999876432 2355788999999999998
Q ss_pred EEec-CCeEEEeeccc-cc---------c-eeee-cCccceeeecCcEEEEEeCC-eEEEEeccCCc-EE-EEE----Ec
Q 002881 405 VRES-SSKIKIFSKNF-QE---------K-RSVR-PTFSAERIYGGTLLAMCSND-FICFYDWAECR-LI-RRI----DV 464 (871)
Q Consensus 405 ~~~~-~~~i~i~~~~~-~~---------~-~~~~-~~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~-~~-~~~----~~ 464 (871)
++++ +++|++|+... .. + ..+. ..|+|+ +++||+++.| +|++||++++. .+ ... ..
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd----g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~ 582 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD----NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS 582 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS
T ss_pred EEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC----CCEEEEEECCCcEEEEECCCcccccchhhccCccc
Confidence 8887 79999999753 11 1 1111 267888 9999999988 99999998765 22 332 34
Q ss_pred ceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 465 TVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 465 ~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
.|.+++|+|+++ |++++.|+.+.+|
T Consensus 583 ~v~~v~fs~d~~-l~s~~~D~~i~lW 607 (611)
T 1nr0_A 583 SVNSVIWLNETT-IVSAGQDSNIKFW 607 (611)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred CeeEEEEcCCCE-EEEecCCCCEEEE
Confidence 689999999998 9999999999887
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.9e-48 Score=446.59 Aligned_cols=447 Identities=16% Similarity=0.180 Sum_probs=359.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-- 90 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-- 90 (871)
.+.+.+.+++|+|+|++||+++ ++.|++|++.+++....+.+|...|++++|+|+|++|++|+.||+|+|||+.+++
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 4567899999999999999987 6799999999999999999999999999999999999999999999999987543
Q ss_pred EEEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 91 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
....+..|.+.|.+++|+|++++|++++.+ +.|++||. + .....+.+|...|.+++|+|++...|++++.|++
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--C-CCcceecCCCCCceEEEECCCCCeEEEEEeCCCe
Confidence 456778999999999999999999998875 46777774 3 3345678999999999999944457999999999
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-------CcccCeEEEEEcC
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------GHTHNVSAVCFHP 239 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------~~~~~v~~i~~~p 239 (871)
|++||..+++....+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++++..+. +|...|.+++|+|
T Consensus 172 v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~--~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp EEEEETTTBEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred EEEEECCCCeEeeeeccccCceEEEEECCCCC--EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 99999988888888999999999999999987 89999999999999999999888874 7999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEE-------------------------------------------ecCCccEEE
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTL-------------------------------------------NYGLERVWA 276 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------------------------------------------~~~~~~i~~ 276 (871)
++++|++++.|++|++||+.+++....+ ..|...|++
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence 9999999999999999999987755433 356678999
Q ss_pred EEEeeCCCeEEEEEcCCeEEEecCCCcceEEE--------------eCCCcEEEEeecceEEEEEeecCcceeccCCCee
Q 002881 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASM--------------DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (871)
Q Consensus 277 i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (871)
++|+|++++|++++.||.+++|.......... .+++.++..... + .
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d------------------~-~- 389 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD------------------D-H- 389 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETT------------------T-E-
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcC------------------C-c-
Confidence 99999999999999999999996543322111 112222111100 0 0
Q ss_pred eeeeeecC------------ccccCCceEEECCCCCEEEEEcCCcEEEEEeecc-cccCcCceeEEEEecCCcEEEEec-
Q 002881 343 PLAVKELG------------TCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAW-RNRSFGSALEFVWSSDGEYAVRES- 408 (871)
Q Consensus 343 ~~~~~~~~------------~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~- 408 (871)
+.+++.. .....+..++++|+|+.++++.++.+.+|+.... ...+...+.+++|+|+|+++++++
T Consensus 390 -v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 390 -LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp -EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred -eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence 1112111 1122456788999998888888888888863211 112335678999999999988887
Q ss_pred CCeEEEeecccccc---e------eee-cCccceeeecCcEEEEEeCC-eEEEEeccC-CcEEEE-----EEcceeEEEE
Q 002881 409 SSKIKIFSKNFQEK---R------SVR-PTFSAERIYGGTLLAMCSND-FICFYDWAE-CRLIRR-----IDVTVKNLYW 471 (871)
Q Consensus 409 ~~~i~i~~~~~~~~---~------~~~-~~~s~~~i~~~~~La~~~~~-~v~~~d~~~-~~~~~~-----~~~~i~~i~~ 471 (871)
+++|++|++..... . .+. ..|+|+ |.+|++++.+ +|++||+.+ ++++.. +...|.+++|
T Consensus 469 D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspd----g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~f 544 (611)
T 1nr0_A 469 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN----GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 544 (611)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT----SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred CCeEEEEEccCCceeeeeccCCCCceEEEEECCC----CCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEE
Confidence 79999999754321 1 111 268888 9999999988 999999987 555443 4468999999
Q ss_pred cCCCCEEEEEeCCeEEEEE
Q 002881 472 ADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 472 s~~~~~la~~~~~~~~~l~ 490 (871)
+|||++||+++.|+.+.+|
T Consensus 545 spdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 545 SPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp CTTSSEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEECCCcEEEE
Confidence 9999999999999999888
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.4e-46 Score=449.32 Aligned_cols=417 Identities=19% Similarity=0.265 Sum_probs=307.2
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
+..+.+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+..|..+|++++|+|++++|++|+.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCeEEEecCCCCeeEEEEee-cCCcCEEEEE
Q 002881 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFT-GGDKPYLITG 205 (871)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~ 205 (871)
+.++ .....+.+|...|.+++|+| ++..+++++.||.|++||+.++ .....+..|...|.+++|+| ++. +++++
T Consensus 84 ~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~ 159 (814)
T 3mkq_A 84 YNTG-EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS--TFASG 159 (814)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE--EEEEE
T ss_pred CCCC-cEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC--EEEEE
Confidence 9988 66677788999999999999 8889999999999999999876 55677788999999999999 555 79999
Q ss_pred eCCCeEEEEECCCCceEEEecCcc-cCeEEEEEcC--CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC
Q 002881 206 SDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHP--ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 206 ~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~i~~~p--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~ 282 (871)
+.||.|++||+.++.....+..+. ..+.+++|+| +++++++++.||.|++||+.+++....+..+...|.+++|+|+
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 999999999999888877776554 8899999999 9999999999999999999999999999999899999999999
Q ss_pred CCeEEEEEcCCeEEEecCCCcce-EEEeCCCcEEEEeecceEEEEEeecCc---ceeccCCCeeeeeeeecCccccCCce
Q 002881 283 SRRIVIGYDEGTIMVKIGREEPV-ASMDNSGKIIWAKHNEIQTVNIKSVGA---DYEVTDGERLPLAVKELGTCDLYPQS 358 (871)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (871)
++.+++|+.||.+++|....... ..+..... .+..+....... ...-.++... ...+.. ....
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~ 306 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE-------RSWCIATHPTGRKNYIASGFDNGFT---VLSLGN---DEPT 306 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSS-------SEEEEEECTTCGGGEEEEEETTEEE---EEECSC---CSCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCC-------cEEEEEEccCCCceEEEEEeCCCEE---EEEcCC---CCce
Confidence 99999999999999985443221 11111000 000000000000 0000000000 001111 1234
Q ss_pred EEECCCCCEEEEEcCC----cEEEEEee------ccc---------ccCcCceeEEEEecCCcEEEEecCCeEEEeeccc
Q 002881 359 LKHNPNGRFVVVCGDG----EYIIYTAL------AWR---------NRSFGSALEFVWSSDGEYAVRESSSKIKIFSKNF 419 (871)
Q Consensus 359 ~~~s~~g~~lav~~~~----~~~i~~~~------~~~---------~~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~ 419 (871)
+.++|+|+.+++++.. .+...... ... ......+..++|+|+|+++++.+++.+.+|+...
T Consensus 307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcc
Confidence 5666666666655421 11111100 000 0112245678888888888877788888887543
Q ss_pred cccee---e-ecCccceeeecCcEEEEEeCC-eEEEEeccCCcEEEEEEcceeEEEEcCCC---CEEEEEeCCeEEEEE
Q 002881 420 QEKRS---V-RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDVTVKNLYWADSG---DLVAIASDTSFYILK 490 (871)
Q Consensus 420 ~~~~~---~-~~~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~~~~~~~i~~i~~s~~~---~~la~~~~~~~~~l~ 490 (871)
..... + ...|+|+ +.+|++++.+ .|.+|+.- ......+..+.|+|+| ..|++++.++.+.+|
T Consensus 387 ~~~~~~~~i~~~~~spd----g~~la~~~~~g~v~l~~~~-----~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~ 456 (814)
T 3mkq_A 387 WRNKAFGKCQDFVWGPD----SNSYALIDETGQIKYYKNF-----KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFF 456 (814)
T ss_dssp TEEEEEEECSEEEECTT----SSCEEEECTTCCEEEEETT-----EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEE
T ss_pred ccccCCCceEEEEEeCC----CCeEEEEeCCCcEEEEECC-----CCccceEEcCCcCccceecceEEEEecCCEEEEE
Confidence 22111 1 1256777 7888888776 78888532 1223466777888887 466776777777666
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-45 Score=422.08 Aligned_cols=430 Identities=25% Similarity=0.396 Sum_probs=362.0
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
+..+.+.+|.++|++++|+|++++|++++.|++|+|||. +++.+..+.+|..+|.+++|+|++++|++++.|+.+++|+
T Consensus 48 ~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~ 126 (577)
T 2ymu_A 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecc
Confidence 345678899999999999999999999999999999995 6788899999999999999999999999999999999998
Q ss_pred CCCCc----------------------------------------EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 002881 86 YNTMD----------------------------------------KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (871)
Q Consensus 86 ~~~~~----------------------------------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 125 (871)
..... .......|...|.++.++|++++|++++.||.|++
T Consensus 127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 206 (577)
T 2ymu_A 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206 (577)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred cccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEE
Confidence 64321 12233456778899999999999999999999999
Q ss_pred EECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEE
Q 002881 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
||... .....+.+|...|.+++|+| ++..+++++.|+.|++||. +++....+.+|...|.+++|+|++. .++++
T Consensus 207 w~~~~--~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~--~l~~~ 280 (577)
T 2ymu_A 207 WNRNG--QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQ--TIASA 280 (577)
T ss_dssp ECTTS--CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSS--EEEEE
T ss_pred EeCCC--cEEEEEecCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCC--EEEEE
Confidence 99654 46677888999999999999 8899999999999999996 4567788889999999999999887 79999
Q ss_pred eCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCe
Q 002881 206 SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR 285 (871)
Q Consensus 206 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 285 (871)
+.|+.|++||.. ++....+.+|...|.+++|+|+++.+++++.||.|++||.. +.....+..+...+.+++|+|+++.
T Consensus 281 ~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 281 SDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp ETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSE
T ss_pred eCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCE
Confidence 999999999964 77888899999999999999999999999999999999976 4556677788899999999999999
Q ss_pred EEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCC
Q 002881 286 IVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG 365 (871)
Q Consensus 286 l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 365 (871)
|++|+.+|.+.+|... +..+.. +..+...++.++|+|+|
T Consensus 359 l~~~~~dg~v~~~~~~----------~~~~~~-------------------------------~~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 359 IASASDDKTVKLWNRN----------GQLLQT-------------------------------LTGHSSSVRGVAFSPDG 397 (577)
T ss_dssp EEEEETTSEEEEEETT----------CCEEEE-------------------------------EECCSSCEEEEEECTTS
T ss_pred EEEEeCCCEEEEEcCC----------CCEEEE-------------------------------ecCCCCCeEEEEECCCC
Confidence 9999999999998422 221100 01123355789999999
Q ss_pred CEEEEEc-CCcEEEEEeecc----cccCcCceeEEEEecCCcEEEEec-CCeEEEeecccccceeee--------cCccc
Q 002881 366 RFVVVCG-DGEYIIYTALAW----RNRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVR--------PTFSA 431 (871)
Q Consensus 366 ~~lav~~-~~~~~i~~~~~~----~~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~~~~~~--------~~~s~ 431 (871)
++|++++ ++.+.+|+.... ...+...+.+++|+|+++++++.+ ++.|++|+.+.+....+. ..|+|
T Consensus 398 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 398 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp SCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT
T ss_pred CEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcC
Confidence 9999887 788999974321 123556788999999999888776 799999997654333222 15677
Q ss_pred eeeecCcEEEEEeCC-eEEEEeccCCcEEEEEE---cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 432 ERIYGGTLLAMCSND-FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 432 ~~i~~~~~La~~~~~-~v~~~d~~~~~~~~~~~---~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
+ +.+|++++.+ .|++||. +++.+..+. ..|.+++|+|+|++|++++.++.+.+|
T Consensus 478 d----~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 478 D----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp T----SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred C----CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence 7 9999999988 9999995 677777776 479999999999999999999999888
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.7e-46 Score=467.33 Aligned_cols=548 Identities=13% Similarity=0.191 Sum_probs=419.8
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
.+.+|.+.|++++|+|+|++|++|+.||+|+|||..+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 90 DKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+.+..+.+|...|.+++|+| ++.++++|+.||.|++||++++ .....+.+|...|.+++|+| +++.+++++.||.|
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTL 767 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEec-CCCEEEEEECCCeE
Confidence 99999999999999999999 5568999999999999999988 66777889999999999999 88999999999999
Q ss_pred EEEECCCCCCeEEEec-------------CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-CcccCeE
Q 002881 168 KIWNLGSPDPNFTLDA-------------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVS 233 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~ 233 (871)
++||+.++.....+.. ....+.+++|+|++. .+++++ ++.+.+||+.++..+..+. +|...|.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD--KIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS--EEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC--EEEEEc-CCcEEEEEecCCCceeEEcCCCCCceE
Confidence 9999988766555432 233688999999987 566666 7899999999988877765 7889999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCc----------
Q 002881 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE---------- 303 (871)
Q Consensus 234 ~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~---------- 303 (871)
+++|+|++.++++++.||.|++||+.++.....+..|.+.|++++|+|+++.+++++.||.+.+|.....
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 924 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999952210
Q ss_pred ----------------------------------------ceEEEeCCCcEEEEee--cceEEEEEeecCcceeccCCCe
Q 002881 304 ----------------------------------------PVASMDNSGKIIWAKH--NEIQTVNIKSVGADYEVTDGER 341 (871)
Q Consensus 304 ----------------------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 341 (871)
....+.+++..+.... +.+.++ +..++..
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~---------d~~~~~~ 995 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII---------ELPNNRV 995 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE---------ETTTTSC
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE---------EcCCCce
Confidence 0111222222222211 111211 1222322
Q ss_pred eeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc----ccCcCceeEEEEecCCcEEEEecCCeEEEee
Q 002881 342 LPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR----NRSFGSALEFVWSSDGEYAVRESSSKIKIFS 416 (871)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~ 416 (871)
. ..+..+...+..++|+|+|+++++++ ++.+.+|+..... ..+...+.++.|++++.+++...++.|++||
T Consensus 996 ~----~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 996 F----SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp E----EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred e----eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 1 22345566788999999999999887 8999999876543 3455678999999999888888899999999
Q ss_pred cccccc-eeee--------cCccceeeecCcEEEEEeCC-eEEEEeccCCcEEEEEE---cceeEEEEcCCCCEEEEEeC
Q 002881 417 KNFQEK-RSVR--------PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASD 483 (871)
Q Consensus 417 ~~~~~~-~~~~--------~~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~~~~~---~~i~~i~~s~~~~~la~~~~ 483 (871)
+..... ..+. ..++|+ +.+|++++.+ .|++||+.+++.+..+. ..|.+++|+|+|++|++++.
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~ 1147 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSD----ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1147 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSS----SSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCCceeEEEcccCCcEEEEEECCC----CCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeC
Confidence 754321 1111 156777 8899999888 99999999988776655 47999999999999999999
Q ss_pred CeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEeeEEec--cEEEEEccCCeEEEEECCeEeEEEe---c
Q 002881 484 TSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG--DCFIYNNSSWRLNYCVGGEVTTMFH---L 558 (871)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~~~~~~l~~~~~~~~~~~~~---~ 558 (871)
++.+.+|. +..+.....................+.+..|.. ..++.. + +.+..+-......+.. .
T Consensus 1148 dg~i~vwd--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-~-g~v~vwd~~~g~~~~~~~~~ 1217 (1249)
T 3sfz_A 1148 NGEIRIWN--------VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-G-GYLKWWNVATGDSSQTFYTN 1217 (1249)
T ss_dssp TSCCCEEE--------SSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-S-SSEEEBCSSSCBCCCCCCCS
T ss_pred CCEEEEEE--------CCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC-C-CeEEEEECCCCceeeeeecc
Confidence 99887772 111111110000000000011134466666765 334333 2 5555543111111222 2
Q ss_pred ccceEEEEEeeeCCEEEEEecCCceEEEEec
Q 002881 559 DRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589 (871)
Q Consensus 559 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~ 589 (871)
..++.-+.+.|++..++..+.+|.+..|.+.
T Consensus 1218 ~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1218 GTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp SCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 2334445677888899999999999988753
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.1e-45 Score=382.59 Aligned_cols=298 Identities=59% Similarity=1.096 Sum_probs=278.0
Q ss_pred ChhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002881 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (871)
Q Consensus 3 ~~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 82 (871)
|++++++++.+|.+.|.+++|+|++++|++++.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|+
T Consensus 1 ~~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CcceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
+||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||.|++||++++......+.+|...|.+++|+|.++..|++|+
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999887777889999999999999997789999999
Q ss_pred CCCcEEEEECCCCCCeEEEe-cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC
Q 002881 163 LDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~ 241 (871)
.||+|++||++...+...+. .+...+..+.|+|.+++.++++|+.|+.|++||+++++++.++.+|...|.+++|+|++
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC
Confidence 99999999998887776664 45688999999987666699999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC--eEEEEEcCCeEEEecC
Q 002881 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR--RIVIGYDEGTIMVKIG 300 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~g~~dg~i~i~~~ 300 (871)
++|++|+.||+|++||..+++....+..+...+++++++|++. ++++|+++|.+.+...
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~ 301 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (304)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC
T ss_pred CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEec
Confidence 9999999999999999999999999999989999999999875 5889999988877543
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-42 Score=400.71 Aligned_cols=540 Identities=12% Similarity=0.105 Sum_probs=406.5
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC----ceeEEeeecCCC-EEEEEEeC--CCCEEEEEeCCCeEEEE
Q 002881 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELP-VRSAKFVA--RKQWVVAGADDMFIRVY 84 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~dg~i~iw 84 (871)
..|.+.|.+++|+|++++|++++ ++.|+|||+.++ +....+.+|... |++++|+| ++++|++|+.||.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46889999999999999999998 889999999998 889999999999 99999999 99999999999999999
Q ss_pred ECCCC--------cEEEEEccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCceEEEEeecCCcceEEEEEec
Q 002881 85 NYNTM--------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 85 ~~~~~--------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 152 (871)
|+.++ +....+..|...|.+++|+|++++|++++.+ +.|.+|| .+ .....+.+|...|.+++|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~-~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG-NSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC-CEEEECCSCSSCEEEEEECS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CC-CcceeeecCCccEEEEEECC
Confidence 99754 6677788899999999999999999999988 6888888 33 45677889999999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCeEEEecCCC---CeeEEEEeec-CCcCEEEEEeCCCeEEEEECCCCceEEEe-c-
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK---GVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQTKSCVQTL-E- 226 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~- 226 (871)
++...+++++.||.|++||+.+++....+..|.. .|.+++|+|+ ++ ++++++.||.|++||+.+++.+..+ .
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE--FVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC--EEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC--EEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence 4444899999999999999999988889999998 9999999998 76 8999999999999999999999998 6
Q ss_pred --CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC----CccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 227 --GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG----LERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 227 --~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
.|...|.+++|+ ++.+|++++.||.|++||+.+++....+..+ ...+.++.|. +++.+++++.+|.+.+|..
T Consensus 249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 899999999999 9999999999999999999999998888776 3578888885 8999999999999999865
Q ss_pred CCcc-eEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeee---eeeecCccccCCceEEECCCCCEEEEEcCCcE
Q 002881 301 REEP-VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPL---AVKELGTCDLYPQSLKHNPNGRFVVVCGDGEY 376 (871)
Q Consensus 301 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~ 376 (871)
.... +..+..... .+..+.+ .. ......+|..... .+. ..+...+..+.+++++.+++.+.++.+
T Consensus 327 ~~~~~~~~~~~~~~-------~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i 395 (615)
T 1pgu_A 327 GHDEVLKTISGHNK-------GITALTV-NP-LISGSYDGRIMEWSSSSMH--QDHSNLIVSLDNSKAQEYSSISWDDTL 395 (615)
T ss_dssp TEEEEEEEECCCSS-------CEEEEET-TT-TEEEETTSCEEETTTTEEE--CCCCSCEEEEECCSTTCCEEEETTTEE
T ss_pred CCCcEEEEEeCCCC-------CEEEEEe-cC-cEEECCCCeEEEEEchhhc--CcccCceEEEEECCCcEEEEEeCCCCE
Confidence 4322 122211110 1111111 00 0000011110000 111 344557788999555545555558999
Q ss_pred EEEEeecccccCcCceeEEEEecCCcEEEEecCCeEEEeecccc-cceeeecCccceeee-cCcEEEEEeC-C-eEEEEe
Q 002881 377 IIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQ-EKRSVRPTFSAERIY-GGTLLAMCSN-D-FICFYD 452 (871)
Q Consensus 377 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~s~~~i~-~~~~La~~~~-~-~v~~~d 452 (871)
.+|+....... .....++++|++.+++...++.+.+|+.... ....+.....+..+. .+.+|++++. + .|++||
T Consensus 396 ~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~ 473 (615)
T 1pgu_A 396 KVNGITKHEFG--SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK 473 (615)
T ss_dssp EETTEEEEECS--SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEE
T ss_pred EEEEcccCccc--CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEE
Confidence 99977654322 2677899999999988888899999986322 222222223332222 3778999987 6 999999
Q ss_pred ccCCcEE-EEE---EcceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHhhhhCCCCCCccccccceeeeeeeeeEEEee
Q 002881 453 WAECRLI-RRI---DVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTG 528 (871)
Q Consensus 453 ~~~~~~~-~~~---~~~i~~i~~s~~~~~la~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~ 528 (871)
+.+++.. ..+ ...|.+++|+|+|++|++++.++.+.+|.-. .+. ....+... -...+.+.
T Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~--------~~~------~~~~~~~~--h~~~v~~~ 537 (615)
T 1pgu_A 474 LSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ--------SRE------VKTSRWAF--RTSKINAI 537 (615)
T ss_dssp TTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--------TTE------EEECCSCC--CSSCEEEE
T ss_pred CCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC--------CCc------ceeEeecC--CCCceeEE
Confidence 9988765 222 2479999999999999999999988877211 100 00001100 13456666
Q ss_pred EE------------eccEEEEEccCCeEEEEECCeE-eEEEe---cccceEEEEEeeeCCEEEEEecCCceEEEEec
Q 002881 529 LW------------VGDCFIYNNSSWRLNYCVGGEV-TTMFH---LDRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589 (871)
Q Consensus 529 ~w------------~~~~~i~~~~~~~l~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~ 589 (871)
.| ++..++.....+.+..+-.... ..+.. ...++.-+.+.+++. |+....++.+..|++.
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 66 4456666666677776652221 22222 345666677778888 9888999999999875
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.4e-42 Score=399.69 Aligned_cols=461 Identities=16% Similarity=0.219 Sum_probs=370.2
Q ss_pred hhhhhcccCCCC-EEEEEEcC--CCCEEEEEEcCCeEEEEeCCCC--------ceeEEeeecCCCEEEEEEeCCCCEEEE
Q 002881 6 EIKRKLAQRSER-VKSVDLHP--SEPWILASLYSGTVCIWNYQSQ--------TMAKSFEVTELPVRSAKFVARKQWVVA 74 (871)
Q Consensus 6 ~~~~~~~~h~~~-v~~i~~s~--~~~~la~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 74 (871)
+....+.+|.+. |++++|+| ++++|++++.||.|+|||+.++ .....+..|..+|.+++|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 455678899999 99999999 9999999999999999999754 667788889999999999999999999
Q ss_pred EeCC----CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEEeecCCc---ceE
Q 002881 75 GADD----MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH---YVM 146 (871)
Q Consensus 75 ~~~d----g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~ 146 (871)
++.+ +.|.+|| +++.+..+..|...|.+++|+|+++ .+++++.||.|++||+.++ .....+..|.. .|.
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~ 210 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVR 210 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEE
T ss_pred eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEE
Confidence 9987 6888887 6788889999999999999999998 8999999999999999987 67777888988 999
Q ss_pred EEEEecCC-CCEEEEEECCCcEEEEECCCCCCeEEE-e---cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce
Q 002881 147 QVTFNPKD-TNTFASASLDRTIKIWNLGSPDPNFTL-D---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (871)
Q Consensus 147 ~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 221 (871)
+++|+| + ++++++++.||.|++||+++++....+ . .|...|.++.|+ ++. ++++++.||.|++||+.+++.
T Consensus 211 ~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 211 DVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ--KFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS--EEEEEETTSEEEEEETTTTEE
T ss_pred EEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC--EEEEEcCCCcEEEEECCCCcE
Confidence 999999 6 899999999999999999999988888 5 899999999999 665 899999999999999999999
Q ss_pred EEEecCc----ccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 222 VQTLEGH----THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 222 ~~~~~~~----~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
+..+..+ ...+.++.|. ++.++++++.||.|++||+.+++....+..|...|.+++| |+ +++++.||.+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~ 361 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIME 361 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence 8888766 4678888886 8889999999999999999999999999999999999999 87 888888888888
Q ss_pred ecC------CCcceEEEeC-CCcEEEE--eecceEEEEEeecCc-------------------------ceeccCCCeee
Q 002881 298 KIG------REEPVASMDN-SGKIIWA--KHNEIQTVNIKSVGA-------------------------DYEVTDGERLP 343 (871)
Q Consensus 298 ~~~------~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 343 (871)
|.. +..++.++.. ++..+.. ....+.++++..... .++..+++.+.
T Consensus 362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 863 2333333332 1222222 122233332221100 01111222211
Q ss_pred eeeeecCccccCCceEEECCCCCEEEEEc--CCcEEEEEeeccc------ccCcCceeEEEEecCCcEEEEec-CCeEEE
Q 002881 344 LAVKELGTCDLYPQSLKHNPNGRFVVVCG--DGEYIIYTALAWR------NRSFGSALEFVWSSDGEYAVRES-SSKIKI 414 (871)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~s~~g~~lav~~--~~~~~i~~~~~~~------~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i 414 (871)
. + .....+..++++ ++++++++ ++.+.+|+..... ..+...+.+++|+|+|+++++++ ++.|++
T Consensus 442 ~----~-~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 514 (615)
T 1pgu_A 442 S----V-RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 514 (615)
T ss_dssp E----E-ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred e----c-ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEE
Confidence 1 0 134466788888 77888777 7999999876432 23457889999999999988886 799999
Q ss_pred eecccccc---------eeee-cCccc----------eeeecCcEEEEEeCC-eEEEEeccCC-cEEEEEE---cceeEE
Q 002881 415 FSKNFQEK---------RSVR-PTFSA----------ERIYGGTLLAMCSND-FICFYDWAEC-RLIRRID---VTVKNL 469 (871)
Q Consensus 415 ~~~~~~~~---------~~~~-~~~s~----------~~i~~~~~La~~~~~-~v~~~d~~~~-~~~~~~~---~~i~~i 469 (871)
|++..... ..+. ..|+| + +.+|++++.+ .|++||+.++ +.+..+. ..|.++
T Consensus 515 w~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l 590 (615)
T 1pgu_A 515 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE----EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 590 (615)
T ss_dssp EETTTTEEEECCSCCCSSCEEEEEECCCC------CCS----CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred eeCCCCcceeEeecCCCCceeEEEEcCccccccccccC----CCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEE
Confidence 99653221 1111 16777 7 8999999988 9999999988 6666654 479999
Q ss_pred EEcCCCCEEEEEeCCeEEEEE
Q 002881 470 YWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 470 ~~s~~~~~la~~~~~~~~~l~ 490 (871)
+|+|+++ |++++.++.+.+|
T Consensus 591 ~~s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 591 LWETPST-LVSSGADACIKRW 610 (615)
T ss_dssp EEEETTE-EEEEETTSCEEEE
T ss_pred EEcCCCC-eEEecCCceEEEE
Confidence 9999999 9999999988777
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-43 Score=445.91 Aligned_cols=463 Identities=16% Similarity=0.234 Sum_probs=379.1
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIRVY 84 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw 84 (871)
....+.+|.+.|.+++|+|++++|++++.||.|+|||+.+++.+..+..|..+|.+++|+| ++..+++|+.||.|++|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 3456778999999999999999999999999999999999999999999999999999999 56689999999999999
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEE----------------------------
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ---------------------------- 136 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------- 136 (871)
|+.+++....+.+|.+.|++++|+|++++|++++.||.|++||+.++.....
T Consensus 729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 9999999999999999999999999999999999999999999876522111
Q ss_pred --------------------------EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeE
Q 002881 137 --------------------------IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (871)
Q Consensus 137 --------------------------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 190 (871)
...+|...|.+++|+| ++..+++++.||.|++||+.++.....+.+|...|.+
T Consensus 809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 887 (1249)
T 3sfz_A 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG 887 (1249)
T ss_dssp TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEE
Confidence 1226778899999999 8999999999999999999999999999999999999
Q ss_pred EEEeecCCcCEEEEEeCCCeEEEEECCCCce-----------------------------EEEe--------cCcccCeE
Q 002881 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-----------------------------VQTL--------EGHTHNVS 233 (871)
Q Consensus 191 i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----------------------------~~~~--------~~~~~~v~ 233 (871)
++|+|++. ++++++.||.|++|++.+... .... ..+...+.
T Consensus 888 v~~spdg~--~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 888 VMFSPDGS--SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEECTTSS--EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEECCCCC--EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 99999887 799999999999999653100 0000 11345789
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcc---------
Q 002881 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP--------- 304 (871)
Q Consensus 234 ~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~--------- 304 (871)
+++|+|+++++++|+.||.|++|++.+++....+..|...|.+++|+|+++.+++++.||.+.+|......
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1045 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSS
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999644322
Q ss_pred -eE--EEeCCCcEEEEe-ecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEE
Q 002881 305 -VA--SMDNSGKIIWAK-HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIY 379 (871)
Q Consensus 305 -~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~ 379 (871)
+. .+.+++.++... .+.+.+++ ..+++... .+..+...+..++|+|+|+++++++ ++.+.+|
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd---------~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWN---------VITGRIER----DFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEE---------TTTTCCCE----EEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEE---------CCCCceeE----EEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 22 223344333222 22233332 33443221 2234455778999999999998887 8999999
Q ss_pred Eeeccc-----ccCcCceeEEEEecCCcEEEEec-CCeEEEeecccccc-eee-----------------ecCccceeee
Q 002881 380 TALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEK-RSV-----------------RPTFSAERIY 435 (871)
Q Consensus 380 ~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~~-~~~-----------------~~~~s~~~i~ 435 (871)
+..... ..+.+.+.+++|+|+|+++++++ ++.|++|++..... ..+ ...|+|+
T Consensus 1113 d~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d--- 1189 (1249)
T 3sfz_A 1113 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD--- 1189 (1249)
T ss_dssp CSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTT---
T ss_pred ECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCC---
Confidence 876543 23456789999999999988877 79999999653321 111 1156777
Q ss_pred cCcEEEEEeCCeEEEEeccCCcEEEEEE---cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 436 GGTLLAMCSNDFICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 436 ~~~~La~~~~~~v~~~d~~~~~~~~~~~---~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
+.+|++++ +.|.+||+.+++.+..+. ..|.++.|+|+|+++++++.++.+++|
T Consensus 1190 -g~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1190 -SKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp -SSCEEEES-SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred -CCEEEECC-CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEE
Confidence 88888876 689999999998877665 378999999999999999999998877
No 12
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=403.47 Aligned_cols=467 Identities=12% Similarity=0.086 Sum_probs=343.0
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
.+|.+.|++++|+|++++||+|+.||.|+||+..+++....+. |..+|.+++|+| +++|++++.|+.|++||+.+++.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 4899999999999999999999999999999988776655543 788999999999 88999999999999999999999
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE----------EEeecCCcceEEEEEecCCCCEEEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT----------QIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
+..+. |.+.|++++|+|++++|++|+.||.|++||++++.... ....+|...|.+++|+|.+...+++|
T Consensus 92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 88886 67899999999999999999999999999999873321 12356889999999999656899999
Q ss_pred ECCCcEEEEECCCCCCeEEEecC------------------CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE
Q 002881 162 SLDRTIKIWNLGSPDPNFTLDAH------------------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 223 (871)
+.||.| +||+++++....+..+ ...|.+++|+|++. +|++++.||.|++||+++++++.
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~--~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL--HIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS--EEEEEETTCCEEEEETTTCCEEE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCcEEE
Confidence 999999 9999998887777655 46799999999987 89999999999999999988765
Q ss_pred E--ec---C-------------cccCeEEEEEc----CCC-CEEEEEECC-----CcEEEEeCC----------------
Q 002881 224 T--LE---G-------------HTHNVSAVCFH----PEL-PIIITGSED-----GTVRIWHAT---------------- 259 (871)
Q Consensus 224 ~--~~---~-------------~~~~v~~i~~~----p~~-~~l~~~~~d-----g~v~iwd~~---------------- 259 (871)
. +. . |...|.+++|+ |++ .++++|+.| +.+.+|++.
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 3 21 1 24479999996 443 467777665 378888842
Q ss_pred --CCeEEEEEe-cCCccEEEEEEee----------CCCeEEEEEcCCeEEEecCCCcceEEEeCCCc-EEEEeecceEEE
Q 002881 260 --TYRLENTLN-YGLERVWAIGYMK----------SSRRIVIGYDEGTIMVKIGREEPVASMDNSGK-IIWAKHNEIQTV 325 (871)
Q Consensus 260 --~~~~~~~~~-~~~~~i~~i~~~~----------~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 325 (871)
+.+....+. .+.+.+.++.+.+ +...+++++.+|.+++|............... .+......+..+
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 222334443 2456788888766 34478899999999998542211000000000 000000112222
Q ss_pred EEeecCc-ceecc-CCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeecccc----------------
Q 002881 326 NIKSVGA-DYEVT-DGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRN---------------- 386 (871)
Q Consensus 326 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~~---------------- 386 (871)
.+..... .|... +.. ......+..+...+..++++|+|++|++++ |+.+.+|++.....
T Consensus 408 ~~s~~~~~~w~~~~~~~--~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAA--QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEHHHHHHHHHTT--BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEcCHHHHHHHHhcc--cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 2111000 00000 000 000112333444566789999999999888 89999999765421
Q ss_pred cCcCceeEEEEecCCcEEEEec-CCeEEEeeccccc--------------------------------------------
Q 002881 387 RSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE-------------------------------------------- 421 (871)
Q Consensus 387 ~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~-------------------------------------------- 421 (871)
.+...+.+++|+|+|+++++++ +++|+||++....
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 2345789999999999988887 8999999965321
Q ss_pred --ceeee--------cCccceeeecCcEEEEEeCC-eEEEEeccCCcEEEEE---------EcceeEEEEc-----CCC-
Q 002881 422 --KRSVR--------PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRI---------DVTVKNLYWA-----DSG- 475 (871)
Q Consensus 422 --~~~~~--------~~~s~~~i~~~~~La~~~~~-~v~~~d~~~~~~~~~~---------~~~i~~i~~s-----~~~- 475 (871)
...+. ..|+|+ | +||+++.+ +|++||+.++..+.+. ...|++++|+ |||
T Consensus 566 ~~~~~l~~h~~~V~svafSpd----G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~ 640 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNI----G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY 640 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBT----S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS
T ss_pred ceeEEEEcCCCcEEEEEecCC----c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC
Confidence 01111 156777 8 99999998 9999999888776431 1249999999 885
Q ss_pred --CEEEEEeCCeEEEEEe
Q 002881 476 --DLVAIASDTSFYILKY 491 (871)
Q Consensus 476 --~~la~~~~~~~~~l~~ 491 (871)
.+|++++.|+.+.+|.
T Consensus 641 ~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 641 SSILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEEEEEETTSEEEEEE
T ss_pred cceEEEEEecCCcEEEEE
Confidence 8999999999998883
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-43 Score=384.97 Aligned_cols=290 Identities=26% Similarity=0.492 Sum_probs=276.2
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.+++....+.+|..+|++++|+|++++|++|+.||+|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++++ .+...+.+|...|.++.|+| ++.++++|+.||+|
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTV 258 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999988 66778889999999999999 88999999999999
Q ss_pred EEEECCCCCCeEEEecCCCCeeEEEEeecCC------------------cCEEEEEeCCCeEEEEECCCCceEEEecCcc
Q 002881 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD------------------KPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~------------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 229 (871)
++||+.+++....+..|...|.+++|+|++. +.++++|+.|+.|++||++++.++..+.+|.
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~ 338 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 338 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence 9999999999999999999999999998632 3489999999999999999999999999999
Q ss_pred cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
..|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|++++|+|++++|++|+.||.|++|.
T Consensus 339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=359.55 Aligned_cols=288 Identities=20% Similarity=0.344 Sum_probs=268.4
Q ss_pred hhhcccCCCCEEEEEEcCC----CCEEEEEEcCCeEEEEeCCCCce--eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002881 8 KRKLAQRSERVKSVDLHPS----EPWILASLYSGTVCIWNYQSQTM--AKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~----~~~la~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 81 (871)
.+.+.+|.+.|.+++|+|+ +.+|++|+.||+|+||++.++.. ...+.+|...|.+++|+|++..+++++.|+.|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3566799999999999985 56899999999999999887754 34678899999999999999999999999999
Q ss_pred EEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||++++ .....+..|...|.+++|+| ++++|++|
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~-~~~~~~~~~~~~v~~~~~sp-dg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-KKEYSLDTRGKFILSIAYSP-DGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-SEEEEEECSSSCEEEEEECT-TSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-ceeEEecCCCceEEEEEECC-CCCEEEEE
Confidence 99999999999999999999999999999999999999999999999988 55666778888999999999 89999999
Q ss_pred ECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC
Q 002881 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~ 241 (871)
+.||.|++||+++++.+..+.+|..+|.+++|+|++. +|++|+.||.|++||++++.....+.+|...|.+++|+|++
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ--LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC--EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC--EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 9999999999999999999999999999999999887 89999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
++|++++.||+|++||+.+++.+..+..|.+.|++++|+|+++.|++++.||.|++|.
T Consensus 261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999984
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-41 Score=361.31 Aligned_cols=289 Identities=22% Similarity=0.398 Sum_probs=268.4
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 84 (871)
+...+.+.+|.+.|.+++|+|++++|++|+.||+|+|||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 85 NYNTM----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 85 ~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
++.++ .....+.+|.+.|.++.|++++ .+++++.|+.|++||++++ .....+.+|...|.+++|+| +++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAP-DTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC-cEEEEEcCCCCceEEEEECC-CCCEEEE
Confidence 99875 3566778999999999999886 5899999999999999988 67778889999999999999 8899999
Q ss_pred EECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC--cccCeEEEEEc
Q 002881 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFH 238 (871)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~i~~~ 238 (871)
|+.||+|++||++++.....+.+|...|.+++|+|++. ++++|+.||.|++||+++++.+..+.. +...|++++|+
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence 99999999999999999999999999999999999887 899999999999999999888776653 33479999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 239 p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
|++++|++|+.||.|++||+.+++....+..|.+.|.+++|+|++..|++|+.||.|++|
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 999999999999999999999999999999999999999999999999999999999998
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-40 Score=357.29 Aligned_cols=290 Identities=23% Similarity=0.339 Sum_probs=267.7
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
...+.+.+|.++|.+++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|+|..|++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecC-CCCEE
Q 002881 86 YNTM------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK-DTNTF 158 (871)
Q Consensus 86 ~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l 158 (871)
+... .....+..|...|.+++|+|++..|++++.||+|++||++++ .....+.+|...|.+++|+|. +++.|
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 8643 345667789999999999999999999999999999999988 677788899999999999884 35899
Q ss_pred EEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc--ccCeEEEE
Q 002881 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH--THNVSAVC 236 (871)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~i~ 236 (871)
++|+.||+|++||++++++...+..|...|++++|+|++. ++++++.|+.|++||+++++.+..+..+ ...+++++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~--~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD--AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 9999999999999999999999999999999999999887 8999999999999999988877666543 34789999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 237 ~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
|+|++.+|++|+.||.|++||+.+++.+..+..|.+.|++++|+|++++|++|+.||.+++|
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-39 Score=341.47 Aligned_cols=292 Identities=25% Similarity=0.424 Sum_probs=267.2
Q ss_pred hhhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002881 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (871)
Q Consensus 4 ~~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 83 (871)
.+.++..+.+|.+.|++++|+|++++|++++.||.|++|+..+++....+..|..+|.+++|+|++++|++|+.||.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||++++ .....+..|..+|.+++|+| +++++++++.
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 169 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 169 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcC-CCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999987 66677888999999999999 8899999999
Q ss_pred CCcEEEEECCCCCCeEEEe-cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeE---EEEEcC
Q 002881 164 DRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS---AVCFHP 239 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~---~i~~~p 239 (871)
||.|++||+++++....+. .+..++.+++|+|++. ++++++.||.|++||+++++++..+.+|...+. .....+
T Consensus 170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS--EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC--EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 9999999999988776664 4567899999999887 899999999999999999999999988866533 233346
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE--cCCeEEEec
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY--DEGTIMVKI 299 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~--~dg~i~i~~ 299 (871)
++.++++|+.||.|++||+.+++.+..+..|...|.+++|+|+++.+++++ .||.+++|.
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 788999999999999999999999999999999999999999999999987 699999984
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-40 Score=361.76 Aligned_cols=292 Identities=24% Similarity=0.413 Sum_probs=262.4
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 84 (871)
+...+.+.+|.+.|++++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|++++|++|+.|+.+++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCc-------EEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEe-----ecCCcceEEEEEe
Q 002881 85 NYNTMD-------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFN 151 (871)
Q Consensus 85 ~~~~~~-------~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~ 151 (871)
++.+.. ....+.+|.+.|.++.|+|++ ..|++|+.|+.|++||++++ .....+ .+|...|.++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-QRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC-CEEEEECCCSSSSCCSCEEEEEEC
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC-cEEEEeecccCCCCccCeEEEEee
Confidence 987532 345577899999999999974 57999999999999999988 444444 5788999999998
Q ss_pred cCCCCEEEEEECCCcEEEEECC-CCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc
Q 002881 152 PKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 230 (871)
|.++++|++|+.||+|++||++ .......+.+|...|.+++|+|++. ++++|+.||.|++||+++++++..+..+..
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~--~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ--RFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS--EEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC--eEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence 8788999999999999999998 4577888899999999999999887 899999999999999999998887765432
Q ss_pred -------CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE----ecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 231 -------NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL----NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 231 -------~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
.|++++|+|+|.+|++|+.||.|++||..+++....+ ..|.+.|.+++|+|+|+.|++|+.||.+++|.
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 4899999999999999999999999999999888777 56788999999999999999999999999994
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=345.88 Aligned_cols=288 Identities=18% Similarity=0.273 Sum_probs=242.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC-----------CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002881 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS-----------QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMF 80 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 80 (871)
..|...|.+++|+|||++|++++ |+++++||... .........+..+|.+++|+|++ .|++|+.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 45777899999999999888877 77777776211 11111223366789999999985 6889999999
Q ss_pred EEEEECCCCcEEEE----EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC
Q 002881 81 IRVYNYNTMDKVKV----FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (871)
Q Consensus 81 i~iw~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 156 (871)
|++||+.+++.... ..+|.+.|++++|+|++++|++|+.||.|++||++++ .....+.+|...|.+++|+|++..
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCcCCceEEEEecCCCCC
Confidence 99999998875543 3489999999999999999999999999999999998 778888999999999999996667
Q ss_pred EEEEEECCCcEEEEECCCCCCeEEEe--cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEE
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA 234 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 234 (871)
+|++++.||+|++||++++++...+. .+...+.+++|+|++.. ++++|+.||.|++||+++++++.++.+|...|++
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~ 262 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE-VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG 262 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT-EEEEEETTSEEEEEESCC--CCEEEECCSSCEEE
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCc-ceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE
Confidence 89999999999999999998877664 44567899999987654 8899999999999999999999999999999999
Q ss_pred EEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCe-EEEEEcCCeEEEecCCCcc
Q 002881 235 VCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR-IVIGYDEGTIMVKIGREEP 304 (871)
Q Consensus 235 i~~~p~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~g~~dg~i~i~~~~~~~ 304 (871)
++|+|++ ++|++|+.||+|++||+.+++.. .+..|.+.|++++|+|+++. |++|+.||.|++|.....+
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999998 58999999999999999988765 46788899999999999874 6689999999999655443
No 20
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-39 Score=384.01 Aligned_cols=466 Identities=14% Similarity=0.137 Sum_probs=320.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 92 (871)
.|..+|.+++|+| +++|++++.|++|+|||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+.+++..
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999888886 7789999999999999999999999999999988753
Q ss_pred -----------EEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecC------------------C
Q 002881 93 -----------KVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH------------------S 142 (871)
Q Consensus 93 -----------~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------~ 142 (871)
..+.+|.+.|++++|+|+ +..|++|+.||.| +||++++ .....+..| .
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccC
Confidence 123578999999999996 4689999999999 9999988 555555544 4
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe-----c-------------CCCCeeEEEEeecCC---cCE
Q 002881 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-----A-------------HQKGVNCVDYFTGGD---KPY 201 (871)
Q Consensus 143 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~-------------~~~~i~~i~~~~~~~---~~~ 201 (871)
..|.+++|+| ++.+|++++.||+|++||+++++++.... . +..+|.+++|++..+ ..+
T Consensus 212 ~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l 290 (902)
T 2oaj_A 212 PKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL 290 (902)
T ss_dssp CCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence 6799999999 79999999999999999998887654311 1 234688888865321 113
Q ss_pred EEEE----------------------------------------------------------------------------
Q 002881 202 LITG---------------------------------------------------------------------------- 205 (871)
Q Consensus 202 l~~~---------------------------------------------------------------------------- 205 (871)
+++|
T Consensus 291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~ 370 (902)
T 2oaj_A 291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370 (902)
T ss_dssp EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence 4444
Q ss_pred eCCCeEEEEECCCCceEEE-----------------------------------------ecCcccCeEEEEEcCCCCEE
Q 002881 206 SDDHTAKVWDYQTKSCVQT-----------------------------------------LEGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 206 ~~dg~i~v~d~~~~~~~~~-----------------------------------------~~~~~~~v~~i~~~p~~~~l 244 (871)
+.||.|++||+.++..... +.+|...+.+++|+|++++|
T Consensus 371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l 450 (902)
T 2oaj_A 371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF 450 (902)
T ss_dssp ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence 3345556666544432211 11222333344567889999
Q ss_pred EEEECCCcEEEEeCCCCeEE----EE--Ee-----cCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEE------
Q 002881 245 ITGSEDGTVRIWHATTYRLE----NT--LN-----YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS------ 307 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~----~~--~~-----~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~------ 307 (871)
++|+.||+|++||+.++... .. +. .|...|++++|+|+++.||+|+.||+|++|.........
T Consensus 451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence 99999999999999876421 11 11 566789999999999999999999999998432211000
Q ss_pred -----EeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002881 308 -----MDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 308 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~ 381 (871)
++....-+ ....+ ....+.... ...+..| ......+..+...++.++||||| +||+++ |+.+.+|+.
T Consensus 531 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~-~~~~~~g---~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 531 SGDLEMNFRRFSL-NNTNG-VLVDVRDRA-PTGVRQG---FMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp -------CCSCCG-GGSSC-SEEECGGGC-CTTCSEE---EEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred Ccccceeeeeccc-cCCcc-ccccccccC-CCCCCCc---cceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 00000000 00000 000000000 0000000 01122344566788999999999 999888 788999986
Q ss_pred ecccc-----------cCcCceeEEEEe-----cCC---cEEEEec-CCeEEEeec---cc-c------cceee------
Q 002881 382 LAWRN-----------RSFGSALEFVWS-----SDG---EYAVRES-SSKIKIFSK---NF-Q------EKRSV------ 425 (871)
Q Consensus 382 ~~~~~-----------~~~~~~~~~~~s-----~~~---~~~~~~~-~~~i~i~~~---~~-~------~~~~~------ 425 (871)
..... .+...+.+++|+ ||| +++++++ +++|++|++ .. . .+...
T Consensus 604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v 683 (902)
T 2oaj_A 604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPI 683 (902)
T ss_dssp TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCC
T ss_pred CCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCce
Confidence 54321 344569999999 885 7777777 899999997 21 1 11100
Q ss_pred -ec-Cccce-----------------eeecCcEEEEEeCCeEEEEeccCCcEEEEEEc---ceeEE---E------EcCC
Q 002881 426 -RP-TFSAE-----------------RIYGGTLLAMCSNDFICFYDWAECRLIRRIDV---TVKNL---Y------WADS 474 (871)
Q Consensus 426 -~~-~~s~~-----------------~i~~~~~La~~~~~~v~~~d~~~~~~~~~~~~---~i~~i---~------~s~~ 474 (871)
.. .|+.+ ...-..++++++...+++|++.+++..++.-. .+..+ . ++++
T Consensus 684 ~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~ 763 (902)
T 2oaj_A 684 HKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKN 763 (902)
T ss_dssp CEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEE
T ss_pred EEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccC
Confidence 00 12100 00012234444566999999999988866532 33444 5 6788
Q ss_pred CCEEEEEeCCeEEEEE
Q 002881 475 GDLVAIASDTSFYILK 490 (871)
Q Consensus 475 ~~~la~~~~~~~~~l~ 490 (871)
+..|++.+.++.+.+|
T Consensus 764 ~~~l~~~~~~g~i~~~ 779 (902)
T 2oaj_A 764 LTVIITLEINGHLRVF 779 (902)
T ss_dssp EEEEEEEETTSEEEEE
T ss_pred ceEEEEEeCCCcEEEE
Confidence 9999999999999987
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.6e-39 Score=339.60 Aligned_cols=288 Identities=19% Similarity=0.349 Sum_probs=259.3
Q ss_pred hhhhhhcccCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEeCCC-----CceeEEeeecCCCEEEEEEeCCCCEEEEEeCC
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQS-----QTMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~-~~la~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 78 (871)
+.+..++.+|.+.|.+++|+|++ ++|++|+.||+|++|++.+ +..+..+.+|..+|.+++|+|++++|++|+.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 45667899999999999999965 7999999999999999864 34567888999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecC-----
Q 002881 79 MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK----- 153 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~----- 153 (871)
++|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++.. ....+.+|...|.++.|.|.
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC-----
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999754 56677889999999999983
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeE
Q 002881 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (871)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 233 (871)
++..+++++.|+.|++||+++.+....+.+|...|.+++|+|++. +|++++.||.|++||+.+++++..+.. ...|.
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~ 241 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT--LIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVF 241 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS--EEEEEETTCEEEEEETTTTEEEEEEEC-CSCEE
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEEEEecC-CCcEE
Confidence 244899999999999999999888888999999999999999887 899999999999999999999888875 46899
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec--------CCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY--------GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 234 ~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+++|+|++.++++++.+ .+++|++..+.....+.. +...+.+++|+|+|++|++|+.||.|++|
T Consensus 242 ~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 242 SLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp EEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence 99999999999988754 699999988777766643 24578999999999999999999999998
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=345.93 Aligned_cols=297 Identities=19% Similarity=0.304 Sum_probs=254.0
Q ss_pred CCChhhhhhhcccCCC-CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeE---EeeecCCCEEEEEEeCCCCEEEEEe
Q 002881 1 MPLRLEIKRKLAQRSE-RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK---SFEVTELPVRSAKFVARKQWVVAGA 76 (871)
Q Consensus 1 m~~~~~~~~~~~~h~~-~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~ 76 (871)
|.-.+.+..++.+|.+ .|.+++|+|+|++||+|+.||+|+|||..++.... ...+|...|++++|+|++++|++|+
T Consensus 1 ~~~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp ---CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence 4455677788999988 99999999999999999999999999998876432 2357999999999999999999999
Q ss_pred CCCeEEEEECCCCc--EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--eEEEEeecCCcceEEEEEec
Q 002881 77 DDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTFNP 152 (871)
Q Consensus 77 ~dg~i~iw~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p 152 (871)
.|+.|++|+..++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++. .....+.+|...|.+++|+|
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 99999999998764 567888999999999999999999999999999999998653 34567788999999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCC--CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC-----------
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------- 219 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~----------- 219 (871)
++.+|++++.|++|++||.++++ ....+.+|...|.+++|+|++. +|++++.|+.|++|+....
T Consensus 161 -~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~--~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 161 -SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ--RLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp -SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred -CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC--EEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 78999999999999999998764 3467789999999999999887 8999999999999996321
Q ss_pred ----ceEEEecC-cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe---------EEEEEecCCccEEEEEEeeCC-C
Q 002881 220 ----SCVQTLEG-HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR---------LENTLNYGLERVWAIGYMKSS-R 284 (871)
Q Consensus 220 ----~~~~~~~~-~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~i~~i~~~~~~-~ 284 (871)
.++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+. .......|...|++++|+|++ .
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 317 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence 23445554 78899999999999999999999999999976542 122234678899999999998 4
Q ss_pred eEEEEEcCCeEEEecC
Q 002881 285 RIVIGYDEGTIMVKIG 300 (871)
Q Consensus 285 ~l~~g~~dg~i~i~~~ 300 (871)
.|++|+.||.|++|..
T Consensus 318 ~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 318 LLASCSDDGEVAFWKY 333 (345)
T ss_dssp EEEEEETTSCEEEEEE
T ss_pred EEEEcCCCCcEEEEEe
Confidence 8999999999999943
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-39 Score=344.82 Aligned_cols=285 Identities=17% Similarity=0.241 Sum_probs=242.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEc------CCeEEEEeCCCCcee----EEeeecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLY------SGTVCIWNYQSQTMA----KSFEVTELPVRSAKFVARKQWVVAGADDMF 80 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~------dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 80 (871)
...|...|.+++|||||++||+|+. ||.|++|+..++... .....|...|.+++|+|++. +++++.||.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4579999999999999999999997 788999998776432 33456888999999999986 566788999
Q ss_pred EEEEECCCCcEEE----EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC
Q 002881 81 IRVYNYNTMDKVK----VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (871)
Q Consensus 81 i~iw~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 156 (871)
|++||+.+++... ...+|.+.|++++|+|++++|++|+.||.|++||++++ .....+.+|...|.+++|+|++..
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCc
Confidence 9999998876543 34479999999999999999999999999999999988 777888899999999999996667
Q ss_pred EEEEEECCCcEEEEECCCCCCeEEE--ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEE
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA 234 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 234 (871)
.+++++.||+|++||++++++...+ ..+...+.+++|+|++.. ++++|+.|+.|++||+++++++..+.+|...|++
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD-TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT-EEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc-eEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence 8999999999999999988776554 346678999999998654 8999999999999999999999999999999999
Q ss_pred EEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEee-CCCeEEEEEcCCeEEEec
Q 002881 235 VCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK-SSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 235 i~~~p~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~g~~dg~i~i~~ 299 (871)
++|+|++ ++|++|+.||+|++||+.+++.+..+ .|.+.|++++|+| ++++|++|+.||.|++|.
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 9999987 57999999999999999999887765 5778999999998 799999999999999984
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=337.03 Aligned_cols=291 Identities=20% Similarity=0.332 Sum_probs=242.8
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC--ceeEEe-ee-cCCCEEEEEEeCCCCEEEEEeCCCe
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSF-EV-TELPVRSAKFVARKQWVVAGADDMF 80 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 80 (871)
+++.+.+.+|.++|.+++|+|+ +|++|+.||+|++||+.++ .....+ .. |..+|++++|+|++++|++|+.|+.
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4456788999999999999998 8999999999999999875 445555 34 8999999999999999999999999
Q ss_pred EEEEECCC-------CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---ceEEEEeecCCcceEEEEE
Q 002881 81 IRVYNYNT-------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTF 150 (871)
Q Consensus 81 i~iw~~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~ 150 (871)
|++|+... .+....+.+|.+.|.+++|+|++++|++|+.|+.|++||++.. ......+.+|...|.+++|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 99999853 3567778899999999999999999999999999999999532 2456678899999999999
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCC--CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC--------c
Q 002881 151 NPKDTNTFASASLDRTIKIWNLGSP--DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--------S 220 (871)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~--------~ 220 (871)
+| ++++|++++.|++|++||...+ +++..+.+|...|.+++|+|++...++++|+.|+.|++||+.++ .
T Consensus 162 ~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 162 HP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp CS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 99 8899999999999999998765 56778889999999999999854448999999999999998754 3
Q ss_pred eEEEecC-cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEE-EecCCc-cEEEEEEee--CCCeEEEEEcCC
Q 002881 221 CVQTLEG-HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--LENT-LNYGLE-RVWAIGYMK--SSRRIVIGYDEG 293 (871)
Q Consensus 221 ~~~~~~~-~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~--~~~~-~~~~~~-~i~~i~~~~--~~~~l~~g~~dg 293 (871)
+...+.. |...|.+++|+|++ +|++++.||.|++|+..+++ .... ...|.. .|.+++|+| +++.|++|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 4455554 88999999999765 89999999999999988774 2333 245655 899999999 789999999999
Q ss_pred eEEEec
Q 002881 294 TIMVKI 299 (871)
Q Consensus 294 ~i~i~~ 299 (871)
.+++|.
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999984
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-38 Score=339.28 Aligned_cols=291 Identities=22% Similarity=0.357 Sum_probs=248.5
Q ss_pred CChhhhhhhcccCCCCEEEEEE-----cC-CCCEEEEEEcCCeEEEEeCCCC-------ceeEEeeecCCCEEEEEEeCC
Q 002881 2 PLRLEIKRKLAQRSERVKSVDL-----HP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVAR 68 (871)
Q Consensus 2 ~~~~~~~~~~~~h~~~v~~i~~-----s~-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~ 68 (871)
+..+.....+.+|.+.|++++| +| ++++|++|+.||+|++||+.++ .....+.+|..+|.+++|+|+
T Consensus 8 ~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred ceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence 3445566789999999999999 77 8999999999999999998753 456678899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe--ecCCcceE
Q 002881 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF--EGHSHYVM 146 (871)
Q Consensus 69 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~ 146 (871)
+.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ...... ..|...|.
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS 166 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence 999999999999999999999999999999999999999999999999999999999999854 222221 26888999
Q ss_pred EEEEecCC---------CCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC
Q 002881 147 QVTFNPKD---------TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 147 ~~~~~p~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~ 217 (871)
+++|+|.. +.++++++.||.|++||. .......+..|...|.+++|+|++. +|++|+.||.|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~--~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGK--YIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSS--EEEEEETTCEEEEEESS
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCC--EEEEEcCCCeEEEEECC
Confidence 99999933 268999999999999994 4556677889999999999999987 89999999999999995
Q ss_pred C-CceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE--EEe-----------cCCccEEEEEEeeCC
Q 002881 218 T-KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN--TLN-----------YGLERVWAIGYMKSS 283 (871)
Q Consensus 218 ~-~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~-----------~~~~~i~~i~~~~~~ 283 (871)
+ ..+...+. +...|.+++|+|++.+++++ .|+.|++|++.+++... .+. .+...+.+++|+|++
T Consensus 244 ~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 244 NLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp CCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred CCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 4 44444443 45679999999999877655 57889999998766432 333 455779999999999
Q ss_pred CeEEEEEcCCeEEEe
Q 002881 284 RRIVIGYDEGTIMVK 298 (871)
Q Consensus 284 ~~l~~g~~dg~i~i~ 298 (871)
+.|++|+.||.|++|
T Consensus 322 ~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTF 336 (343)
T ss_dssp CCEEEEETTSEEEEE
T ss_pred CeEEEecCCceEEEE
Confidence 999999999999998
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-38 Score=340.42 Aligned_cols=281 Identities=21% Similarity=0.361 Sum_probs=252.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecC------------------CCEEEEEEeCCCCEEEE
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE------------------LPVRSAKFVARKQWVVA 74 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~ 74 (871)
+|.+.|.+++|+|+|++||+|+ ++.++||++.+++.+..+..+. ..|++++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 5999999999999999999976 7899999999998887776543 24999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002881 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (871)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++++ .....+. +...+.+++|+|.+
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-eeEEEEE-cCCCcEEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999988 4444444 55679999999977
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeEEE-------ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC--------
Q 002881 155 TNTFASASLDRTIKIWNLGSPDPNFTL-------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-------- 219 (871)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------- 219 (871)
++++++|+.||.|++||++++.....+ .+|...|.+++|+|++. ++++|+.||.|++||+++.
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS--EEEEEETTSEEEEEEC-----------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC--EEEEEeCCCEEEEEECCCCCCcccccC
Confidence 899999999999999999988776665 56888999999999887 8999999999999999753
Q ss_pred ----ceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEee------CCCeEEEE
Q 002881 220 ----SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK------SSRRIVIG 289 (871)
Q Consensus 220 ----~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~------~~~~l~~g 289 (871)
.+...+.+|...|.+++|+|++.+|++|+.||.|++||..+++.+..+..|.+.|.+++|++ +++.|++|
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 34567788999999999999999999999999999999999999999999999999999986 68899999
Q ss_pred EcCCeEEEe
Q 002881 290 YDEGTIMVK 298 (871)
Q Consensus 290 ~~dg~i~i~ 298 (871)
+.||.+++|
T Consensus 377 s~Dg~i~iW 385 (393)
T 1erj_A 377 SGDCKARIW 385 (393)
T ss_dssp ETTSEEEEE
T ss_pred CCCCcEEEC
Confidence 999999998
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.2e-38 Score=343.89 Aligned_cols=287 Identities=27% Similarity=0.414 Sum_probs=256.9
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~ 129 (871)
...+.+|..+|++++|+|++++|++|+.||.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.||.|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC
Q 002881 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
+. .....+.+|...|.+++|+| +++.+++|+.|++|++||++++.+...+.+|...|.++.++|++. ++++|+.|+
T Consensus 181 ~~-~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~--~l~s~s~D~ 256 (410)
T 1vyh_C 181 GF-ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT--LIASCSNDQ 256 (410)
T ss_dssp SS-CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS--EEEEEETTS
T ss_pred CC-ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC--EEEEEcCCC
Confidence 87 67778889999999999999 889999999999999999999999999999999999999999887 899999999
Q ss_pred eEEEEECCCCceEEEecCcccCeEEEEEcCC--------------------CCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 002881 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE--------------------LPIIITGSEDGTVRIWHATTYRLENTLNY 269 (871)
Q Consensus 210 ~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (871)
.|++||+.++++...+.+|...|.+++|+|+ +.+|++|+.||.|++||+.+++.+..+..
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~ 336 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence 9999999999999999999999999999996 67999999999999999999999999999
Q ss_pred CCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeec
Q 002881 270 GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349 (871)
Q Consensus 270 ~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (871)
|.+.|.+++|+|++++|++|+.||.|++|....... + ..+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~----------------~------------------------~~~ 376 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC----------------M------------------------KTL 376 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC----------------C------------------------EEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------E------------------------EEE
Confidence 999999999999999999999999999984322110 0 001
Q ss_pred CccccCCceEEECCCCCEEEEEc-CCcEEEEE
Q 002881 350 GTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYT 380 (871)
Q Consensus 350 ~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~ 380 (871)
..+...+.+++|+|++.+|++++ |+.+.+|+
T Consensus 377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 12233556788888888777766 77777775
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=344.20 Aligned_cols=281 Identities=16% Similarity=0.237 Sum_probs=253.3
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeC----CCCc------eeEEeee----------cCCCEEEEEEeCCCCE
Q 002881 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNY----QSQT------MAKSFEV----------TELPVRSAKFVARKQW 71 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~ 71 (871)
.|.+.|.+++|+|+++ +|++|+.||.|++|++ .+++ ....+.. |...|++++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 4568999999999999 9999999999999999 8887 4555554 6779999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcc-------
Q 002881 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY------- 144 (871)
Q Consensus 72 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------- 144 (871)
|++|+.||.|++|+ .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.++ .....+..+...
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG-TVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-EEEEEECCC----------
T ss_pred EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEEEeeccccCccceeec
Confidence 99999999999999 678888999999999999999999999999999999999999988 556666666666
Q ss_pred --------eEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 145 --------VMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 145 --------v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
+.++.|+| +..+++++.+|.|++||+++++....+..|...|.+++|+|++. ++++++.||.|++||+
T Consensus 201 ~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVD--DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK--LLLSASDDGTLRIWHG 276 (425)
T ss_dssp -----CCCBSCCEEEE--TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT--EEEEEETTSCEEEECS
T ss_pred cccCCcceeeEEEEcC--CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC--EEEEEcCCCEEEEEEC
Confidence 89999998 36799999999999999999999999999999999999999887 8999999999999999
Q ss_pred CCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEE
Q 002881 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (871)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~ 296 (871)
.+++.+..+..|...|.+++|+|++ ++++++.||.|++||+.+++.+..+..+...+.+++|+|++++|++++.+|.+.
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 9999999999999999999999999 999999999999999999999999999889999999999999999999999999
Q ss_pred EecC
Q 002881 297 VKIG 300 (871)
Q Consensus 297 i~~~ 300 (871)
+|..
T Consensus 356 i~~~ 359 (425)
T 1r5m_A 356 VYDL 359 (425)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9854
No 29
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.7e-37 Score=326.43 Aligned_cols=290 Identities=20% Similarity=0.325 Sum_probs=253.0
Q ss_pred CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002881 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (871)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iw 126 (871)
.....++.+|..+|.+++|+|++++|++|+.||.|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCc---eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEE
Q 002881 127 DWEKGW---MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (871)
Q Consensus 127 d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 203 (871)
++.+.. .....+.+|...|.++.|+| + +.+++++.|++|++||+++++....+.+|...|.+++|+|++. +++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~ 200 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR--LFV 200 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC--EEE
Confidence 998652 35566789999999999998 3 4699999999999999999999999999999999999999877 899
Q ss_pred EEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC--CccEEEEEEee
Q 002881 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMK 281 (871)
Q Consensus 204 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~i~~~~ 281 (871)
+|+.||.|++||++++.++..+.+|...|++++|+|++.+|++|+.||+|++||+.+++.+..+..+ ...|.+++|+|
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999887776543 24799999999
Q ss_pred CCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEE
Q 002881 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (871)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (871)
++++|++|+.||.+.+|...... .+ ..+..+...+.+++|
T Consensus 281 ~g~~l~~g~~d~~i~vwd~~~~~---------~~-------------------------------~~~~~h~~~v~~~~~ 320 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVWDALKAD---------RA-------------------------------GVLAGHDNRVSCLGV 320 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTCC---------EE-------------------------------EEEECCSSCEEEEEE
T ss_pred CCCEEEEECCCCeEEEEEcccCc---------Ee-------------------------------eEeecCCCcEEEEEE
Confidence 99999999999999998432211 00 001223345567888
Q ss_pred CCCCCEEEEEc-CCcEEEEE
Q 002881 362 NPNGRFVVVCG-DGEYIIYT 380 (871)
Q Consensus 362 s~~g~~lav~~-~~~~~i~~ 380 (871)
+|+|++|++++ |+.+.+|+
T Consensus 321 s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 321 TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEcCCccEEecC
Confidence 88888887776 77788773
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-36 Score=319.01 Aligned_cols=292 Identities=23% Similarity=0.362 Sum_probs=251.7
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
+..+++.+|...|++++|+|++++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC-CeEEEecCCCCeeEEEEeecCCcCEEEEEe
Q 002881 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (871)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~ 206 (871)
+.++ .....+.+|...|.+++|+| ++.++++|+.||+|++||++++. ....+.+|...|.+++|+|.... ++++|+
T Consensus 84 ~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~sgs 160 (304)
T 2ynn_A 84 YNTG-EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGC 160 (304)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT-EEEEEE
T ss_pred CCCC-cEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC-EEEEEe
Confidence 9988 66777889999999999999 78999999999999999998774 44667899999999999985322 899999
Q ss_pred CCCeEEEEECCCCceEEEec-CcccCeEEEEEcC--CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCC
Q 002881 207 DDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHP--ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (871)
Q Consensus 207 ~dg~i~v~d~~~~~~~~~~~-~~~~~v~~i~~~p--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 283 (871)
.|+.|++||++++.+...+. +|...+..+.|+| ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC
Confidence 99999999998877665554 4567899999987 67899999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECC
Q 002881 284 RRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (871)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 363 (871)
+.|++|+.||.|++|...... .. +.+..+...+.+++++|
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~~---------~~-------------------------------~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTYK---------VE-------------------------------KTLNVGLERSWCIATHP 280 (304)
T ss_dssp SEEEEEETTSCEEEEETTTCC---------EE-------------------------------EEECCSSSSEEEEEECT
T ss_pred CEEEEEcCCCeEEEEECCCCc---------ee-------------------------------eeccCCCccEEEEEECC
Confidence 999999999999998433211 11 00111222445788888
Q ss_pred CCC--EEEEEcCCcEEEEEee
Q 002881 364 NGR--FVVVCGDGEYIIYTAL 382 (871)
Q Consensus 364 ~g~--~lav~~~~~~~i~~~~ 382 (871)
++. +++++.++.+.+|+..
T Consensus 281 ~~~~~~~asg~~~g~~~~~~~ 301 (304)
T 2ynn_A 281 TGRKNYIASGFDNGFTVLSLG 301 (304)
T ss_dssp TCGGGCEEEEETTEEEEEECC
T ss_pred CCCceEEEEecCCceEEEEec
Confidence 875 6888888888887653
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.6e-37 Score=322.39 Aligned_cols=290 Identities=23% Similarity=0.357 Sum_probs=252.7
Q ss_pred ceeEEeeecCCCEEEEEEeCC----CCEEEEEeCCCeEEEEECCCCcE--EEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 002881 48 TMAKSFEVTELPVRSAKFVAR----KQWVVAGADDMFIRVYNYNTMDK--VKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 121 (871)
...+...+|.++|.+++|+|+ +.+|++|+.|++|++|++.+++. ...+.+|...|.+++|+|+++++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 334556679999999999985 67899999999999999987654 446789999999999999999999999999
Q ss_pred eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCE
Q 002881 122 LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (871)
Q Consensus 122 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 201 (871)
.|++||++++ .....+..|...+.+++|+| ++++|++++.||.|++||+++++....+..+...+.+++|+|+++ +
T Consensus 103 ~i~lWd~~~~-~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~ 178 (321)
T 3ow8_A 103 HIRLWDLENG-KQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK--Y 178 (321)
T ss_dssp EEEEEETTTT-EEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS--E
T ss_pred cEEEEECCCC-CEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC--E
Confidence 9999999988 56667778888899999999 899999999999999999999998889999999999999999987 8
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEee
Q 002881 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (871)
Q Consensus 202 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 281 (871)
+++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.||.|++||+.+++....+..|...|.+++|+|
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEE
Q 002881 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (871)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (871)
++++|++|+.||.+++|..... ..+ ..+..+...+..++|
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~---------~~~-------------------------------~~~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTR---------TCV-------------------------------HTFFDHQDQVWGVKY 298 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTT---------EEE-------------------------------EEECCCSSCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCC---------EEE-------------------------------EEEcCCCCcEEEEEE
Confidence 9999999999999999843221 110 011222335568899
Q ss_pred CCCCCEEEEEc-CCcEEEEEe
Q 002881 362 NPNGRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 362 s~~g~~lav~~-~~~~~i~~~ 381 (871)
+|+|+.|++++ |+.+.+|+.
T Consensus 299 s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 299 NGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEeC
Confidence 99998888776 788888874
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8e-37 Score=326.63 Aligned_cols=294 Identities=21% Similarity=0.349 Sum_probs=261.5
Q ss_pred CCChhhhhhhcccCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEeCCCCc-----eeEEeeecCCCEEEEEEeCCCCEEEE
Q 002881 1 MPLRLEIKRKLAQRSERVKSVDLHPS-EPWILASLYSGTVCIWNYQSQT-----MAKSFEVTELPVRSAKFVARKQWVVA 74 (871)
Q Consensus 1 m~~~~~~~~~~~~h~~~v~~i~~s~~-~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~ 74 (871)
|+-++.++.+|+||.+.|++++|+|+ +++|++|+.||+|+|||+.+++ ....+.+|..+|.+++|+|++++|++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 34456677789999999999999998 5799999999999999987653 45678889999999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002881 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (871)
++.|+.|++|+............+...+....+++++++|++|+.|+.+++||............+|...+..++|++..
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 99999999999999998888888999999999999999999999999999999988766666777899999999998843
Q ss_pred -CCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeE
Q 002881 155 -TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (871)
Q Consensus 155 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 233 (871)
...+++++.|+.|++||+++++....+.+|..+|.+++|+|+++ ++++|+.||.|++||+++++++..+.. ...|.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKHLYTLDG-GDIIN 260 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEETTCEEEEEETTTTEEEEEEEC-SSCEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC--EEEEEeCCCeEEEEEeccCceeeeecC-CceEE
Confidence 35788999999999999999999999999999999999999887 899999999999999999999888874 46899
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe---------cCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN---------YGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 234 ~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+++|+|++.+ ++++.|+.|++||+.++.....+. .+...|++++|+|++++|++|+.||.|++|
T Consensus 261 ~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 261 ALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp EEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 9999998765 556679999999999887766554 456789999999999999999999999998
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-36 Score=323.57 Aligned_cols=291 Identities=19% Similarity=0.261 Sum_probs=253.4
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
+....+.+|..+|++++|+|++++|++|+.||.|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+.+|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-----ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEE
Q 002881 128 WEKG-----WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (871)
Q Consensus 128 ~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 202 (871)
+... ......+..|...|.++.|+| ++..+++++.|++|++||+++++....+.+|...|.+++++|+.++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 8643 123455678999999999999 7889999999999999999999999999999999999999987555589
Q ss_pred EEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC--CccEEEEEEe
Q 002881 203 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYM 280 (871)
Q Consensus 203 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~i~~~ 280 (871)
++|+.||.|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||+++++....+..+ ...+.+++|+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998877766543 2468999999
Q ss_pred eCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEE
Q 002881 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (871)
Q Consensus 281 ~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (871)
|++++|++|+.||.+++|..... ..+ ..+..+...+..++
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~---------~~~-------------------------------~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKG---------SRV-------------------------------SILFGHENRVSTLR 333 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC---------SEE-------------------------------EEECCCSSCEEEEE
T ss_pred CCCCEEEEEECCCcEEEEECCCC---------ceE-------------------------------EEEECCCCcEEEEE
Confidence 99999999999999999843211 110 01123344567888
Q ss_pred ECCCCCEEEEEc-CCcEEEE
Q 002881 361 HNPNGRFVVVCG-DGEYIIY 379 (871)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~ 379 (871)
|+|+|++|++++ |+.+.+|
T Consensus 334 ~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ECTTSSCEEEEETTSEEEEE
T ss_pred ECCCCCEEEEEcCCCCEEec
Confidence 888888888777 7777777
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.4e-38 Score=338.84 Aligned_cols=310 Identities=20% Similarity=0.305 Sum_probs=262.8
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEE
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLS 116 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 116 (871)
..+..|+..+....+++.+|.++|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++++|++
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence 34556787778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCc------eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE-----ecCC
Q 002881 117 SSDDMLIKLWDWEKGW------MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-----DAHQ 185 (871)
Q Consensus 117 ~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~ 185 (871)
|+.|+.+++||+.+.. .....+.+|...|.++.|.|.++..|++|+.|++|++||+.+++.+..+ .+|.
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence 9999999999987531 2345677899999999999966778999999999999999999887776 5688
Q ss_pred CCeeEEEEeecCCcCEEEEEeCCCeEEEEECC-CCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE
Q 002881 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (871)
Q Consensus 186 ~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (871)
..|.++.|++.... ++++|+.||.|++||++ .+.++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++.+
T Consensus 206 ~~v~~~~~~~~~~~-~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 206 ADVLSLSINSLNAN-MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp SCEEEEEECSSSCC-EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred cCeEEEEeecCCCC-EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 89999999874322 89999999999999998 45778899999999999999999999999999999999999999988
Q ss_pred EEEecCCc-------cEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceecc
Q 002881 265 NTLNYGLE-------RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVT 337 (871)
Q Consensus 265 ~~~~~~~~-------~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (871)
..+..+.. .+.+++|+|+|++|++|+.||.+.+|..... ..+. .+.
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---------~~~~---------~~~--------- 337 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---------EMVL---------NLG--------- 337 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---------CEEE---------EEC---------
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---------ceEE---------EEe---------
Confidence 87765432 4889999999999999999999999843211 1110 000
Q ss_pred CCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeec
Q 002881 338 DGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALA 383 (871)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~ 383 (871)
.....+...+.+++|+|+|++|++++ |+.+.+|+...
T Consensus 338 ---------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 338 ---------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ---------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ---------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 00123455678899999999998887 88899987654
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.7e-36 Score=314.91 Aligned_cols=299 Identities=20% Similarity=0.305 Sum_probs=246.4
Q ss_pred ceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC-----CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC
Q 002881 48 TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNT-----MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 121 (871)
.+..++.+|.++|++++|+|++ ++|++|+.|++|++|++.+ +.++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3456788999999999999965 8999999999999999864 345677889999999999999999999999999
Q ss_pred eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCC---
Q 002881 122 LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD--- 198 (871)
Q Consensus 122 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~--- 198 (871)
.|++||++++ .....+.+|...|.+++|+| ++..+++|+.|++|++||++ +.....+.+|...|.++.++|...
T Consensus 88 ~v~~wd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 88 TLRLWDVATG-ETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp EEEEEETTTT-EEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred EEEEEECCCC-CeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 9999999998 67778889999999999999 88999999999999999996 456778889999999999998542
Q ss_pred -cCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEE
Q 002881 199 -KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAI 277 (871)
Q Consensus 199 -~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i 277 (871)
..++++++.|+.|++||+++++....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+.++
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 243 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL 243 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence 337999999999999999999999999999999999999999999999999999999999999998888765 789999
Q ss_pred EEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCc
Q 002881 278 GYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQ 357 (871)
Q Consensus 278 ~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (871)
+|+|++..+++++.++ +.+|.... ... ...+... ..+ ........+.
T Consensus 244 ~~sp~~~~la~~~~~~-i~v~~~~~----------~~~--------~~~~~~~------~~~--------~~~~~~~~v~ 290 (319)
T 3frx_A 244 AFSPNRYWLAAATATG-IKVFSLDP----------QYL--------VDDLRPE------FAG--------YSKAAEPHAV 290 (319)
T ss_dssp EECSSSSEEEEEETTE-EEEEEETT----------EEE--------EEEECCC------CTT--------CCGGGCCCEE
T ss_pred EEcCCCCEEEEEcCCC-cEEEEeCc----------Cee--------eeccCcc------ccc--------cccCcCccee
Confidence 9999999999888766 55542111 000 0000000 000 0011223445
Q ss_pred eEEECCCCCEEEEEc-CCcEEEEEeec
Q 002881 358 SLKHNPNGRFVVVCG-DGEYIIYTALA 383 (871)
Q Consensus 358 ~~~~s~~g~~lav~~-~~~~~i~~~~~ 383 (871)
.++|+|||++|++++ |+.+.+|++..
T Consensus 291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 291 SLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EEEECCCCCEEEEeecCceEEEEEEee
Confidence 789999999888777 78888887654
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-36 Score=323.68 Aligned_cols=287 Identities=14% Similarity=0.195 Sum_probs=264.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
...+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++||+.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCce----------EEEEeecCCc--ceEEEEE
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWM----------CTQIFEGHSH--YVMQVTF 150 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~----------~~~~~~~~~~--~v~~~~~ 150 (871)
+++.+..+. |...|.+++|+|+++++++++.+ |.|.+||+..... ....+..|.. .+.+++|
T Consensus 105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 999988888 88899999999999999999999 9999999876521 2233445555 8999999
Q ss_pred ecCCCCEEEEEECCCcEEEEECCC-CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc
Q 002881 151 NPKDTNTFASASLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 229 (871)
+| +++.+++++.||.|++||+++ ......+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+. +.
T Consensus 184 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~-~~ 259 (369)
T 3zwl_B 184 ST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT--YFITSSRDTNSFLVDVSTLQVLKKYE-TD 259 (369)
T ss_dssp CG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred cC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC--EEEEecCCceEEEEECCCCceeeeec-CC
Confidence 99 889999999999999999998 677788889999999999999877 89999999999999999999988887 77
Q ss_pred cCeEEEEEcCCCCEEEEEECCC--------------cEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeE
Q 002881 230 HNVSAVCFHPELPIIITGSEDG--------------TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~dg--------------~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i 295 (871)
..+.+++|+|+++++++++.++ .+++||..+++....+..+...|.+++|+|++++|++++.||.+
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence 8899999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred EEec
Q 002881 296 MVKI 299 (871)
Q Consensus 296 ~i~~ 299 (871)
.+|.
T Consensus 340 ~iw~ 343 (369)
T 3zwl_B 340 RLHH 343 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9983
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-36 Score=320.78 Aligned_cols=322 Identities=15% Similarity=0.211 Sum_probs=272.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK-- 91 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-- 91 (871)
|.++|.+++|+|||++++++..++.+.+|.............|..+|++++|+|++++|++++ ||.|++|++.+++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 567899999999999999988877777776555444444557999999999999999999999 99999999987653
Q ss_pred -EEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce-EEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 92 -VKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 92 -~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
...+. .|...|.+++|+|++++|++++.||.|++||++++.. ....+..|...|.+++|+| +++.+++++.||.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence 33333 7899999999999999999999999999999998732 4556778999999999999 88999999999999
Q ss_pred EEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE
Q 002881 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 247 (871)
++||+++++....+..|...+.+++|+|+++ ++++++.||.|++||+++++.+..+. +...+.+++|+|++++++++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGT--KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCC--EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEE
Confidence 9999999988889999999999999999886 79999999999999999998887775 77889999999999999999
Q ss_pred ECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEE
Q 002881 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNI 327 (871)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (871)
+.||.|++||+.+++.. .+..+...+.+++|+|++++|++++.+|.+.+|..... ..+..
T Consensus 243 ~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~---------~~~~~---------- 302 (337)
T 1gxr_A 243 MESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---------ASIFQ---------- 302 (337)
T ss_dssp ETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEEE----------
T ss_pred cCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC---------eEEEE----------
Confidence 99999999999988754 56677789999999999999999999999999843321 11100
Q ss_pred eecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002881 328 KSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (871)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~ 382 (871)
..+...+..+.|+|++++|++++ +|.+.+|++.
T Consensus 303 ----------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 303 ----------------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ----------------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ----------------------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 01122456899999999988776 8889999753
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-38 Score=347.69 Aligned_cols=285 Identities=14% Similarity=0.251 Sum_probs=253.3
Q ss_pred CCCCEEEEEEcCCCC-EEEEE----------EcCCeEEEEeCCCCc---eeEEeeecCCCEEEEEEeCCCCEEEEEeCCC
Q 002881 14 RSERVKSVDLHPSEP-WILAS----------LYSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDM 79 (871)
Q Consensus 14 h~~~v~~i~~s~~~~-~la~~----------~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 79 (871)
+..+|.+++|+|+++ +|++| +.||.|+|||+.++. ....+ .|..+|++++|+|++++|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 345788999999987 89998 789999999998875 33333 4888999999999999999999999
Q ss_pred eEEEEECCC----CcEEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCc------eEE--EEeecCCcceE
Q 002881 80 FIRVYNYNT----MDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGW------MCT--QIFEGHSHYVM 146 (871)
Q Consensus 80 ~i~iw~~~~----~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~--~~~~~~~~~v~ 146 (871)
.|++|++.+ .+....+..|...|++++|+|+ +.+|++++.||.|++||++++. ... .....|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 4578888999999999999998 8999999999999999999874 221 22457889999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecC------CCCeeEEEEeecCCcCEEEEEeCCC---eEEEEECC
Q 002881 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH------QKGVNCVDYFTGGDKPYLITGSDDH---TAKVWDYQ 217 (871)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~~l~~~~~dg---~i~v~d~~ 217 (871)
+++|+|+++.++++++.||.|++||+++++....+..+ ...+.+++|+|++.. ++++++.++ .|++||++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST-RVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT-EEEEEECCSSSCCCCEEETT
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC-EEEEEECCCCCceEEEEeCC
Confidence 99999955899999999999999999998888888766 788999999998744 899999998 99999999
Q ss_pred CC-ceEEEec-CcccCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCC-CeEEEEEcCC
Q 002881 218 TK-SCVQTLE-GHTHNVSAVCFHP-ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEG 293 (871)
Q Consensus 218 ~~-~~~~~~~-~~~~~v~~i~~~p-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~g~~dg 293 (871)
++ .++..+. +|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++ ..|++++.||
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 86 6677777 8999999999999 89999999999999999999999999999999999999999999 8999999999
Q ss_pred eEEEecC
Q 002881 294 TIMVKIG 300 (871)
Q Consensus 294 ~i~i~~~ 300 (871)
.+++|..
T Consensus 329 ~i~iw~~ 335 (416)
T 2pm9_A 329 KIEVQTL 335 (416)
T ss_dssp EEEEEES
T ss_pred cEEEEEc
Confidence 9999843
No 39
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.7e-36 Score=330.18 Aligned_cols=288 Identities=13% Similarity=0.175 Sum_probs=260.4
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc------eeEEeeecCCCEEEEEEeCC----C---CE
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT------MAKSFEVTELPVRSAKFVAR----K---QW 71 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~ 71 (871)
....+.+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ ....+..|..+|++++|+|+ + ++
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345677889999999999999 799999999999999999987 78888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEECCCCcE-----EEEEccC-----CCCeEEEEEc----CCCCE-EEEEECCCeEEEEECCC------
Q 002881 72 VVAGADDMFIRVYNYNTMDK-----VKVFEAH-----TDYIRCVAVH----PTLPY-VLSSSDDMLIKLWDWEK------ 130 (871)
Q Consensus 72 l~~~~~dg~i~iw~~~~~~~-----~~~~~~~-----~~~i~~i~~~----~~~~~-l~~~~~dg~i~iwd~~~------ 130 (871)
|++++.||.|++|++.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999998886 8888888 5899999999 99999 99999999999999987
Q ss_pred CceEE----EEe-------ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec---C---CCCeeEEEE
Q 002881 131 GWMCT----QIF-------EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---H---QKGVNCVDY 193 (871)
Q Consensus 131 ~~~~~----~~~-------~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~i~~i~~ 193 (871)
+.... ..+ ..|...|.+++|+| ++ .+++++.||.|++||++++++...+.. | ...|.+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 42222 133 45888999999999 66 999999999999999999988888888 8 999999999
Q ss_pred eecCCcCEEEEEeCC---CeEEEEECCCCceEEEecC-------------cccCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 194 FTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEG-------------HTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 194 ~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~-------------~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
+|++. ++++++.| |.|++||+++++++..+.. |...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~--~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 242 SPQGS--LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp CSSTT--EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCC--EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99877 89999999 9999999999999999998 999999999999999999999999999999
Q ss_pred CCCCeEEEEEe------cC---------------CccEEEEEEeeCC----------CeEEEEEcCCeEEEe
Q 002881 258 ATTYRLENTLN------YG---------------LERVWAIGYMKSS----------RRIVIGYDEGTIMVK 298 (871)
Q Consensus 258 ~~~~~~~~~~~------~~---------------~~~i~~i~~~~~~----------~~l~~g~~dg~i~i~ 298 (871)
+.+++.+..+. .+ ...|.+++|+|++ +.|++|+.||.+.+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence 99999999998 66 8899999999998 799999999999998
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-36 Score=335.92 Aligned_cols=329 Identities=18% Similarity=0.210 Sum_probs=264.6
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 96 (871)
.+++++|+|++++|++++.||.|++||..+++....+..+ ..+....|+|++++|++|+.||.|++||+.+++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3457999999999999999999999999887766555555 445556789999999999999999999999999888888
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (871)
.|.+.|++++|+|++++|++|+.||.|++||++++ .....+.+|...|.+++|+| +++.|++++.||.|++||+++++
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-SNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-cCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCc
Confidence 99999999999999999999999999999999987 55667789999999999999 88999999999999999999998
Q ss_pred CeEEEec---CCCCeeEEEEe---------------------ecCCcCEEEEEeCCCeEEEEECCCCceEEEec-CcccC
Q 002881 177 PNFTLDA---HQKGVNCVDYF---------------------TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHN 231 (871)
Q Consensus 177 ~~~~~~~---~~~~i~~i~~~---------------------~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~ 231 (871)
....+.. +...+.++.+. |++. ++++|+.||.|++||+++++.+..+. .|...
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK--YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE--EEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC--EEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence 8887764 44556666664 4444 89999999999999999988777664 47889
Q ss_pred eEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeE-EEEEec-CCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEE
Q 002881 232 VSAVCFHPELP-IIITGSEDGTVRIWHATTYRL-ENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (871)
Q Consensus 232 v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~-~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~ 308 (871)
|++++|+|+++ +|++|+.||.|++||+.+++. +..+.. +...+.++ +.++++.|++++.||.+++|......
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~---- 367 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPE---- 367 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTT----
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCC----
Confidence 99999999999 999999999999999998753 566665 55677777 55688899999999999998432210
Q ss_pred eCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCC----EEEEEcCCcEEEEEee
Q 002881 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR----FVVVCGDGEYIIYTAL 382 (871)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~----~lav~~~~~~~i~~~~ 382 (871)
....+.. .... ..+......+..++|+|+++ +++++.+|.+.+|+..
T Consensus 368 --~~~~~~~------------------~~~~-------~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 368 --SERPAIE------------------FETP-------TFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp --CCSCEEC------------------TTSC-------EEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred --CCcccee------------------ccCc-------cEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 0000000 0000 00123344567888888888 7777778888888653
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=317.49 Aligned_cols=247 Identities=19% Similarity=0.232 Sum_probs=214.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEE----eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS----FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++.... ..+|...|++++|+|+|++|++|+.||+|++||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 356789999999986 688999999999999998875543 347999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEEE-eecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQI-FEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
++.+..+.+|.+.|++++|+|++. .|++|+.||.|++||++++...... ...|...+.+++|+|.+++++++|+.||+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 999999999999999999999874 7899999999999999988443332 23456679999999977889999999999
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCC-EEE
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-III 245 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~ 245 (871)
|++||+++++++..+.+|...|++++|+|++.. +|++|+.|+.|++||+.+++.. .+.+|.+.|++++|+|+++ +|+
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~-~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP-FLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSC-CEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCe-EEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEE
Confidence 999999999999999999999999999998754 7999999999999999988754 5688999999999999986 677
Q ss_pred EEECCCcEEEEeCCCCe
Q 002881 246 TGSEDGTVRIWHATTYR 262 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~ 262 (871)
++|.||+|++|++.+..
T Consensus 317 s~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 317 TVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEETTSCEEEEECCC--
T ss_pred EEcCCCeEEEEECCCCC
Confidence 99999999999987654
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-35 Score=349.57 Aligned_cols=288 Identities=22% Similarity=0.361 Sum_probs=253.9
Q ss_pred hhhhcccCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEeCCCC-----ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002881 7 IKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQ-----TMAKSFEVTELPVRSAKFVARKQWVVAGADDMF 80 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~-~~la~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 80 (871)
....+.+|.+.|++++|+|++ .+|++|+.||+|++|++.+. .....+.+|...|++++|+|++++|++|+.||.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345688999999999999975 68999999999999998763 345678899999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe---ecCCcceEEEEEecCC-CC
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF---EGHSHYVMQVTFNPKD-TN 156 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~p~~-~~ 156 (871)
|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||.... ...... .+|...|.+++|+|+. ..
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 999999999999999999999999999999999999999999999998765 222222 4688899999999943 26
Q ss_pred EEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEE
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~ 236 (871)
.+++++.|++|++||+++.+....+.+|...|.+++|+|++. ++++|+.||.|++||+.+++++..+.. ...|.+++
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~ 609 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS--LCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALC 609 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEE
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEE
Confidence 899999999999999999998899999999999999999887 899999999999999999998888764 56799999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCC-------------------ccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-------------------ERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 237 ~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------------~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
|+|++.++++++ ++.|++||+.+++.+..+..+. ..+.+++|+|+|++|++|+.||.|++
T Consensus 610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 999998887766 5679999999998877665321 13688999999999999999999999
Q ss_pred ec
Q 002881 298 KI 299 (871)
Q Consensus 298 ~~ 299 (871)
|.
T Consensus 689 W~ 690 (694)
T 3dm0_A 689 WG 690 (694)
T ss_dssp EE
T ss_pred Ee
Confidence 83
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=314.50 Aligned_cols=303 Identities=21% Similarity=0.318 Sum_probs=242.3
Q ss_pred ceeEEeeecCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE---EEccCCCCeEEEEEcCCCCEEEEEECCCeE
Q 002881 48 TMAKSFEVTEL-PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK---VFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (871)
Q Consensus 48 ~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 123 (871)
..+..+.+|.. .|.+++|+|+|++|++|+.|+.|++|++.++.... ...+|...|++++|+|++++|++|+.|+.|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 45677888877 99999999999999999999999999998876432 236899999999999999999999999999
Q ss_pred EEEECCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC---eEEEecCCCCeeEEEEeecCCc
Q 002881 124 KLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDK 199 (871)
Q Consensus 124 ~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~ 199 (871)
++||+.++. .....+.+|...|.+++|+| ++++|++|+.|++|++||++.+.. ...+..|...|.+++|+|++.
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~- 163 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE- 163 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-
Confidence 999998763 35667889999999999999 899999999999999999987643 456678999999999999987
Q ss_pred CEEEEEeCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---------------Ce
Q 002881 200 PYLITGSDDHTAKVWDYQTKS--CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT---------------YR 262 (871)
Q Consensus 200 ~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~---------------~~ 262 (871)
+|++++.|+.|++||..++. +...+.+|...|++++|+|++++|++|+.||+|++|+... .+
T Consensus 164 -~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 164 -LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp -CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred -EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 79999999999999998775 4578889999999999999999999999999999998532 12
Q ss_pred EEEEEec-CCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCe
Q 002881 263 LENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGER 341 (871)
Q Consensus 263 ~~~~~~~-~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (871)
.+..+.. |...|++++|+|++..|++++.|+.+++|....... + ....
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~----~---------------------------~~~~ 291 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD----P---------------------------QQPT 291 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC----T---------------------------TSCC
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC----c---------------------------ceee
Confidence 3344443 667899999999999999999999999983221100 0 0000
Q ss_pred eeeeeeecCccccCCceEEECCCCC-EEEEEc-CCcEEEEEeecc
Q 002881 342 LPLAVKELGTCDLYPQSLKHNPNGR-FVVVCG-DGEYIIYTALAW 384 (871)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~s~~g~-~lav~~-~~~~~i~~~~~~ 384 (871)
..+.......+...+.+++|+|++. +||+++ ||.+.+|+....
T Consensus 292 ~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 0001111223444667888888874 777665 788888876543
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=307.92 Aligned_cols=285 Identities=22% Similarity=0.330 Sum_probs=258.1
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002881 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 84 (871)
+++.+.+.+|.+.|.+++| |++++|++++.||.|++||+.++.....+..|..+|.+++|+|+++.|++++.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3566788999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC---cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 85 NYNTM---DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 85 ~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
++... +....+..|...|.++.| +++++++++.||.|++|| .+ .....+..|...+.++.|.|.+++.++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG-SLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT-EEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC-cEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 98754 557778899999999999 467999999999999999 33 56777888999999999998778999999
Q ss_pred ECCCcEEEEECCCCCCeEEEec-CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 002881 162 SLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~ 240 (871)
+.||.|++|| ..+....+.. +...+.+++|+|++. +++++.+|.|++||+++++++..+.+|...|++++|+|+
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH---FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE---EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe---EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 9999999999 3445566666 889999999999875 899999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCC
Q 002881 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (871)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (871)
+ .+++++.||.|++||+.+++....+..+...+++++|+|+++ +++++.||.+++|....
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 9 689999999999999999999999999988999999999998 66799999999985443
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.8e-35 Score=311.65 Aligned_cols=279 Identities=15% Similarity=0.234 Sum_probs=251.2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCce---eEEee--ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM---AKSFE--VTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
.+|.+.|.+++|+|++++|++++ ||.|++||+.++.. ...+. .|..+|.+++|+|++++|++++.||.|++||+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 47999999999999999999998 99999999987653 33333 68899999999999999999999999999999
Q ss_pred CCCc--EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 87 NTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 87 ~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
.+++ ....+..|...|.+++|+|++++|++++.||.|++||++++ .....+..|...|.+++|+| +++.+++++.|
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 204 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISN-DGTKLWTGGLD 204 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred CCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECC-CCCEEEEEecC
Confidence 9887 56677889999999999999999999999999999999988 66777888999999999999 88999999999
Q ss_pred CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l 244 (871)
|.|++||+++++....+. +...+.+++|+|+++ ++++++.++.|++||+.+++. ..+..|...|.+++|+|++++|
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~--~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE--WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWF 280 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSS--EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEE
Confidence 999999999887776654 678899999999887 799999999999999997765 4567799999999999999999
Q ss_pred EEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
++++.||.|++||+.+++...... +...+.+++|+|+++.|++++.||.+.+|
T Consensus 281 ~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred EEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 999999999999999998775543 56889999999999999999999999998
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-35 Score=323.60 Aligned_cols=303 Identities=14% Similarity=0.200 Sum_probs=245.2
Q ss_pred CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEC----CCCc------EEEEEcc-------
Q 002881 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNY----NTMD------KVKVFEA------- 97 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~----~~~~------~~~~~~~------- 97 (871)
...+.+|+++..........|..+|++++|+|+++ +|++|+.||.|++|++ .+++ ....+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ----------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 34566788766655545556779999999999999 9999999999999999 8887 4555544
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 98 ---HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 98 ---~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
|.+.|++++|+|++++|++|+.||.|++||. ++ .....+..|...|.+++|+| +++.|++++.||.|++||+.+
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TG-ALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEET-TS-CEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTT
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CC-CeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCC
Confidence 6889999999999999999999999999994 44 56677788999999999999 889999999999999999999
Q ss_pred CCCeEEEecCCCC---------------eeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 002881 175 PDPNFTLDAHQKG---------------VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 175 ~~~~~~~~~~~~~---------------i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p 239 (871)
++....+..+... +.++.|++++ .+++++.+|.|++||+.+++.+..+..|...|.+++|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD---KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETT---EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC---EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence 8888888777766 8999999875 599999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEee
Q 002881 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKH 319 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 319 (871)
++++|++++.||.|++||+.+++....+..+...+.+++|+|++ .+++++.+|.+.+|..... ..+..
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~-- 325 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---------TLLAL-- 325 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---------EEEEE--
T ss_pred CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---------cEeEe--
Confidence 99999999999999999999999888888888999999999999 9999999999999843221 11100
Q ss_pred cceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc
Q 002881 320 NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR 385 (871)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~ 385 (871)
+..+...+..+.|+|+|++|++++ +|.+.+|+.....
T Consensus 326 -----------------------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 326 -----------------------------SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp -----------------------------EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred -----------------------------cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 011223556899999999999887 8899999876543
No 47
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.4e-36 Score=322.64 Aligned_cols=284 Identities=18% Similarity=0.328 Sum_probs=249.4
Q ss_pred hcccCCCCEEEEEEcCC----CCEEEEEEcCCeEEEEeCCCCceeEEeee-----cCCCEEEEEEeCC----CCEEEEEe
Q 002881 10 KLAQRSERVKSVDLHPS----EPWILASLYSGTVCIWNYQSQTMAKSFEV-----TELPVRSAKFVAR----KQWVVAGA 76 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~----~~~la~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~ 76 (871)
...+|.++|.+++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|++++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44589999999999994 55677777788999999998887777764 4577999999999 67999999
Q ss_pred CCCeEEEEECCCCcEEEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEEe---ecCCcceEEEEEec
Q 002881 77 DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIF---EGHSHYVMQVTFNP 152 (871)
Q Consensus 77 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~p 152 (871)
.||.|++||+.+++.+..+..|...|.+++|+| ++.+|++|+.||.|++||++++ .....+ ..|...|.+++|+|
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-EEEEEECSTTSCSSCEEEEEECT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-eEEEEecccccccCceeEEEECC
Confidence 999999999999999999999999999999999 8999999999999999999988 555555 67999999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCeEEE----------------------------ecCCCCeeEEEEeecCCcCEEEE
Q 002881 153 KDTNTFASASLDRTIKIWNLGSPDPNFTL----------------------------DAHQKGVNCVDYFTGGDKPYLIT 204 (871)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------~~~~~~i~~i~~~~~~~~~~l~~ 204 (871)
+++.+++++.||.|++||+++++....+ ..|...|.+++|+ ++ ++++
T Consensus 172 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~ 246 (366)
T 3k26_A 172 -LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD--LILS 246 (366)
T ss_dssp -TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT--EEEE
T ss_pred -CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC--EEEE
Confidence 8899999999999999999876433222 2388999999998 44 8999
Q ss_pred EeCCCeEEEEECCCCce--------------EEEecCcccCeEEEEEcCC--CCEEEEEECCCcEEEEeCCCCe----EE
Q 002881 205 GSDDHTAKVWDYQTKSC--------------VQTLEGHTHNVSAVCFHPE--LPIIITGSEDGTVRIWHATTYR----LE 264 (871)
Q Consensus 205 ~~~dg~i~v~d~~~~~~--------------~~~~~~~~~~v~~i~~~p~--~~~l~~~~~dg~v~iwd~~~~~----~~ 264 (871)
++.||.|++||+.++.. +..+..|...|++++|+|+ +.+|++|+.||.|++||+.+++ ..
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 326 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC 326 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc
Confidence 99999999999987643 7778889999999999999 9999999999999999999875 44
Q ss_pred EEEecC--CccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 265 NTLNYG--LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 265 ~~~~~~--~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
..+..+ ...|++++|+|++++|++|+.||.+++|.
T Consensus 327 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 327 TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 567666 68999999999999999999999999983
No 48
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-35 Score=319.07 Aligned_cols=285 Identities=17% Similarity=0.152 Sum_probs=252.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
+..|.++|.+++|+|++++|++++.+|.|++||..+++ ....+..|..+|++++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8888999999999999999999999999999999999998
Q ss_pred CcEEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce---EEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002881 89 MDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM---CTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 89 ~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
++....+ ..|...|.+++|+|++++|++++.||.|++||++.+.. .......|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcC
Confidence 8755444 67899999999999999999999999999999987642 3444567889999999999 8899999999
Q ss_pred CCcEEEEECC------------------CCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 164 DRTIKIWNLG------------------SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 164 dg~i~i~d~~------------------~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
||.|++||++ .++....+..|...|.+++|+|++. ++++++.||.|++||+++++++..+
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS--RVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS--EEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC--EEEEEeCCCEEEEEECCCCceeEEE
Confidence 9999999954 5666777778999999999999887 8999999999999999999999999
Q ss_pred cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--CeE--------------------------------E------E
Q 002881 226 EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT--YRL--------------------------------E------N 265 (871)
Q Consensus 226 ~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~--~~~--------------------------------~------~ 265 (871)
..|..+|.+++|+|++.++++| .||.|++|++.+ +.. . .
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA 319 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccc
Confidence 9999999999999999888877 899999999887 421 0 2
Q ss_pred EE-ecCCccEEEEEEe-eCC---CeEEEEEcCCeEEEec
Q 002881 266 TL-NYGLERVWAIGYM-KSS---RRIVIGYDEGTIMVKI 299 (871)
Q Consensus 266 ~~-~~~~~~i~~i~~~-~~~---~~l~~g~~dg~i~i~~ 299 (871)
.+ ..|...|++++|. ++| ++|++|+.||.|++|.
T Consensus 320 ~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 320 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 22 3677899999977 555 8999999999999983
No 49
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-34 Score=302.81 Aligned_cols=291 Identities=23% Similarity=0.407 Sum_probs=251.0
Q ss_pred CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002881 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (871)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iw 126 (871)
......+.+|..+|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 35566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe
Q 002881 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (871)
Q Consensus 127 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~ 206 (871)
|++++ .....+.+|...|.++.|+| +++++++++.||.|++||+++++....+..|..+|.++.|+|++. ++++++
T Consensus 93 d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~ 168 (312)
T 4ery_A 93 DVSSG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS--LIVSSS 168 (312)
T ss_dssp ETTTC-CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEE
T ss_pred ECCCC-cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC--EEEEEe
Confidence 99988 66777889999999999999 889999999999999999999999999999999999999999877 899999
Q ss_pred CCCeEEEEECCCCceEEEec-CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEE--EEE-eeC
Q 002881 207 DDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA--IGY-MKS 282 (871)
Q Consensus 207 ~dg~i~v~d~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~--i~~-~~~ 282 (871)
.||.|++||+++++.+..+. .+...+..++|+|++++|++++.||.|++||+.+++.+..+..+...... ..+ .++
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence 99999999999998877664 45668999999999999999999999999999999998888877554322 233 467
Q ss_pred CCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEEC
Q 002881 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (871)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 362 (871)
+.+|++|+.||.+++|...... .+ ..+..+...+..++|+
T Consensus 249 ~~~l~sg~~dg~i~vwd~~~~~---------~~-------------------------------~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 249 GKWIVSGSEDNLVYIWNLQTKE---------IV-------------------------------QKLQGHTDVVISTACH 288 (312)
T ss_dssp SCEEEECCTTSCEEEEETTTCC---------EE-------------------------------EEECCCSSCEEEEEEC
T ss_pred CcEEEEECCCCEEEEEECCCch---------hh-------------------------------hhhhccCCcEEEEeec
Confidence 8899999999999998433211 11 1112233455688999
Q ss_pred CCCCEEEEEc---CCcEEEEEe
Q 002881 363 PNGRFVVVCG---DGEYIIYTA 381 (871)
Q Consensus 363 ~~g~~lav~~---~~~~~i~~~ 381 (871)
|+++++++++ |+.+.+|+.
T Consensus 289 p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 289 PTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SSSSEEEEEECTTTCCEEEEEC
T ss_pred CcCCceEEEEccCCccEEEecC
Confidence 9999988875 788888864
No 50
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=305.20 Aligned_cols=248 Identities=25% Similarity=0.359 Sum_probs=209.4
Q ss_pred CCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEE-cc-CCCCeEEEEEcCCCCEEEEEECC
Q 002881 45 QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--DKVKVF-EA-HTDYIRCVAVHPTLPYVLSSSDD 120 (871)
Q Consensus 45 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~-~~-~~~~i~~i~~~~~~~~l~~~~~d 120 (871)
.+.+.+..+.+|..+|.+++|+|+ +|++|+.|+.|++|++.++ .....+ .. |...|.+++|+|++++|++|+.|
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 345677889999999999999998 9999999999999999875 445556 44 99999999999999999999999
Q ss_pred CeEEEEECCCC------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC----CCeEEEecCCCCeeE
Q 002881 121 MLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP----DPNFTLDAHQKGVNC 190 (871)
Q Consensus 121 g~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~ 190 (871)
+.|++||++.. ......+.+|...|.+++|+| ++++|++|+.|++|++||++.. +....+.+|...|.+
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 99999998532 245667889999999999999 8899999999999999999532 345667889999999
Q ss_pred EEEeecCCcCEEEEEeCCCeEEEEECCCC--ceEEEecCcccCeEEEEEcCC--CCEEEEEECCCcEEEEeCCCC-----
Q 002881 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCVQTLEGHTHNVSAVCFHPE--LPIIITGSEDGTVRIWHATTY----- 261 (871)
Q Consensus 191 i~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v~~i~~~p~--~~~l~~~~~dg~v~iwd~~~~----- 261 (871)
++|+|++. +|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +..|++|+.|++|++||+.++
T Consensus 159 v~~~p~~~--~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 159 VIWHPSEA--LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEECSSSS--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEECCCCC--EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 99999887 8999999999999998766 678889999999999999998 678999999999999998654
Q ss_pred ---eEEEEEec-CCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 262 ---RLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 262 ---~~~~~~~~-~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.....+.. |...|++++|++++ .|++++.||.+++|
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVY 276 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEE
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEE
Confidence 34444544 77899999999665 89999999999998
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.9e-35 Score=319.12 Aligned_cols=284 Identities=17% Similarity=0.227 Sum_probs=241.3
Q ss_pred hhhhcccCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCceeEEee--ecCCCEEEEEEeC-CCCEEEEEeCCCeEE
Q 002881 7 IKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQTMAKSFE--VTELPVRSAKFVA-RKQWVVAGADDMFIR 82 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~-~~la~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 82 (871)
+.+.+.+|.+.|.+++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+| ++++|++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 445678999999999999999 899999999999999999888877776 5999999999999 789999999999999
Q ss_pred EEECCCCcEEEEEcc---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC-EE
Q 002881 83 VYNYNTMDKVKVFEA---HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TF 158 (871)
Q Consensus 83 iw~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l 158 (871)
+||+.+ .....+.. |...|.+++|+|++++|++|+.||.|++||++. .....+..|...|.+++|+| ++. ++
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~~~~~-~~~~~l 220 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNP-RCDWLM 220 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSSCEEEEEECS-SCTTEE
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCCcEEEEEECC-CCCCEE
Confidence 999986 55555543 448899999999999999999999999999953 46677788999999999999 555 99
Q ss_pred EEEECCCcEEEEECCC----CCCeEEEecCCCCeeEEEEee-cCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc----
Q 002881 159 ASASLDRTIKIWNLGS----PDPNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT---- 229 (871)
Q Consensus 159 ~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---- 229 (871)
++++.|+.|++||+++ +.....+ .|...|.+++|+| ++. ++++++.|+.|++||+++++....+.+|.
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST--KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC--EEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC--EEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 9999999999999987 4444444 6899999999999 877 89999999999999999887766555432
Q ss_pred -------------cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec--CCccEEEEEEeeCCCeEEEEEcCCe
Q 002881 230 -------------HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY--GLERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 230 -------------~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
..+..++|+|++.+ +++.||.|++||+.+++.+..+.. +.+.+..++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 23444556666655 667899999999999999998886 346677789999999999997 899
Q ss_pred EEEecC
Q 002881 295 IMVKIG 300 (871)
Q Consensus 295 i~i~~~ 300 (871)
|++|..
T Consensus 375 i~iw~~ 380 (383)
T 3ei3_B 375 ILIWNR 380 (383)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999843
No 52
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-35 Score=315.85 Aligned_cols=316 Identities=16% Similarity=0.192 Sum_probs=230.1
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEE
Q 002881 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKV 92 (871)
Q Consensus 19 ~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~ 92 (871)
..+.+.+++.++.. ..+.....|++.... ...|+..|++++|+|||++|++|+. |+.|++|+..++...
T Consensus 9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~ 83 (357)
T 4g56_B 9 SGVDLGTENLYFQS-NGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN 83 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred cCCCCCccceEEec-CCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence 44566666655444 446778999875433 3469999999999999999999997 788999998776542
Q ss_pred ----EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE---EEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002881 93 ----KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC---TQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 93 ----~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (871)
.....|...|.+++|+|++ .+++++.||.|++||+.++... .....+|...|.+++|+| ++++|++|+.||
T Consensus 84 ~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg 161 (357)
T 4g56_B 84 ESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDF 161 (357)
T ss_dssp GGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTS
T ss_pred eeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCC
Confidence 2334688899999999997 4667889999999999876322 223457999999999999 889999999999
Q ss_pred cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCC-C
Q 002881 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHPEL-P 242 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~i~~~p~~-~ 242 (871)
+|++||+++++....+..|...|.+++|+++++. ++++++.||.|++||++++++...+. .+...+++++|+|++ .
T Consensus 162 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~-~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT-IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS-CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc-eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 9999999999999999999999999999998754 78999999999999999988766553 466779999999975 6
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCC-CeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecc
Q 002881 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (871)
+|++|+.|+.|++||+.+++....+..+...|++++|+|++ ++|++|+.||.|++|...... ++
T Consensus 241 ~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~---------~~------ 305 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE---------VF------ 305 (357)
T ss_dssp EEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE---------EE------
T ss_pred eEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc---------Ee------
Confidence 89999999999999999999999999999999999999987 578999999999998433211 11
Q ss_pred eEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECC-CCCEEEEEc-CCcEEEEEeec
Q 002881 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP-NGRFVVVCG-DGEYIIYTALA 383 (871)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~lav~~-~~~~~i~~~~~ 383 (871)
. . ..+...++.++|+| ++++|++++ |+.+.+|++..
T Consensus 306 ---------------------~----~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 306 ---------------------R----D-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ---------------------E----E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred ---------------------E----E-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 0 0 12334567888998 788887776 78888887643
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.4e-34 Score=315.16 Aligned_cols=276 Identities=25% Similarity=0.424 Sum_probs=248.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
.+.+.+|.+.|.. ++++++++|++|+.||.|++||+.+++.+..+.+|..+|.++.|+ ++.+++|+.||.|++||+.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3467889987533 355568999999999999999999999999999999999999997 5699999999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+++.+..+.+|...|.++.|+ ++.+++|+.||.|++||++++ .....+.+|...|.++.| +++.+++++.||.|
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMV 261 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-CEEEEEECCSSCEEEEEE---CSSCEEEEETTSCE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-cEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEE
Confidence 999999999999999999996 468999999999999999988 667778899999999999 46789999999999
Q ss_pred EEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE
Q 002881 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 247 (871)
++||+++++....+..|...|.++.| ++. ++++++.||.|++||+++++++..+.+|...+.++.++ +.++++|
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 335 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSG 335 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEE--CSS--EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEE
T ss_pred EEEECCCCcEeEEecCCCCceEEEEE--CCC--EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEE
Confidence 99999999999999999999999998 444 79999999999999999999999999999999988875 5699999
Q ss_pred ECCCcEEEEeCCCCeEEEEEec---CCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 248 SEDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
+.||.|++||+.+++.+..+.. +...|.+++|+ ++++++|+.||.+.+|..
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 9999999999999999988886 66789999995 689999999999999843
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8e-34 Score=317.45 Aligned_cols=279 Identities=20% Similarity=0.356 Sum_probs=250.7
Q ss_pred hhcccCCCCE-EEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 9 RKLAQRSERV-KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 9 ~~~~~h~~~v-~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
..+.+|.+.| .++.+ ++++|++|+.||.|++||+.+++.+..+.+|..+|.+++|+|++ .+++|+.||.|++||+.
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 4677898885 66666 56799999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECCCCceE----------------------EEEeecCCc
Q 002881 88 TMDKVKVFEAHTDYIRCVAVH--PTLPYVLSSSDDMLIKLWDWEKGWMC----------------------TQIFEGHSH 143 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------~~~~~~~~~ 143 (871)
+++.+..+.+|.+.|.+++|+ ++++++++|+.||.|++||+++.... ...+.+|..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 999999999999999999999 57789999999999999999876322 456778888
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE
Q 002881 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (871)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 223 (871)
.+.++. | +++.+++++.||.|++||++++++...+.+|...|.+++|+|++. ++++|+.||.|++||+++++++.
T Consensus 272 ~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 272 SVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK--RCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp CEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred eEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEE
Confidence 888874 4 578999999999999999999999999999999999999999887 79999999999999999999999
Q ss_pred EecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 224 TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 224 ~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
.+.+|...|.+++|++ .++++++.||.|++||+.++....... +...+..++|+|+++.+++|+ +|.+.+|.
T Consensus 347 ~~~~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 347 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EECCCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred EEeCCCCcEEEEEEcC--CEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 9999999999999984 799999999999999999888766654 446778899999999999988 89999984
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=316.65 Aligned_cols=288 Identities=15% Similarity=0.233 Sum_probs=246.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEE-EEEc---CCeEEEEeCCCCceeEEee-ecCCCEEEEEEeCC---CCEEEEEeCCC
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWIL-ASLY---SGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVAR---KQWVVAGADDM 79 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la-~~~~---dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~~dg 79 (871)
...+.+|.+.|.+++|+|+++.++ +|+. ||.|+|||+.+++...... .|..+|.+++|+|+ +++|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 345678999999999999997665 4554 8999999999987765433 68999999999999 69999999999
Q ss_pred eEEEEECCCCc-EEEEEccCCCCeEEEEE------cCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCc----ceEEE
Q 002881 80 FIRVYNYNTMD-KVKVFEAHTDYIRCVAV------HPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH----YVMQV 148 (871)
Q Consensus 80 ~i~iw~~~~~~-~~~~~~~~~~~i~~i~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~ 148 (871)
.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||++++......+..|.. .+.++
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 99999999988 88899999999999965 678999999999999999999987545566655544 78999
Q ss_pred E----EecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEee---cCCcCEEEEEeCCCeEEEEECCCCce
Q 002881 149 T----FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT---GGDKPYLITGSDDHTAKVWDYQTKSC 221 (871)
Q Consensus 149 ~----~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~l~~~~~dg~i~v~d~~~~~~ 221 (871)
. |+| +++++++++.||.|++||+++++... ...+...|.+++|+| ++. ++++++.||.|++||++++++
T Consensus 171 ~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 171 AFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMN--KLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEECCCC--CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCC--EEEEEESTTEEEEEEEEEEET
T ss_pred EEEeccCC-CCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCC--EEEEECCCCeEEEEeCcCCCc
Confidence 8 667 88999999999999999999887643 456889999999999 665 899999999999999987665
Q ss_pred EEEe-----cCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC-------------------eEEEEEecCCccEEE
Q 002881 222 VQTL-----EGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTY-------------------RLENTLNYGLERVWA 276 (871)
Q Consensus 222 ~~~~-----~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~~-------------------~~~~~~~~~~~~i~~ 276 (871)
...+ .+|...|++++|+|+++ ++++++.||.|++||+.++ +.+..+..|...|++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 4443 38999999999999998 8999999999999998743 467778888899999
Q ss_pred EEEeeCCCeEE-EEEcCCeEEEec
Q 002881 277 IGYMKSSRRIV-IGYDEGTIMVKI 299 (871)
Q Consensus 277 i~~~~~~~~l~-~g~~dg~i~i~~ 299 (871)
++|+|+++.|+ +++.||.+++|.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEE
T ss_pred EEEcCCCCeEEEEecCCCcEEEEE
Confidence 99999999998 799999999983
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4e-34 Score=311.49 Aligned_cols=294 Identities=23% Similarity=0.360 Sum_probs=234.5
Q ss_pred CCChhhhhhhcccCCCCEEEEEEcCCCCEE---EEEEcCCeEEEEeCCCCcee----EEeeecCCCEEEEEEeCCCCEEE
Q 002881 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWI---LASLYSGTVCIWNYQSQTMA----KSFEVTELPVRSAKFVARKQWVV 73 (871)
Q Consensus 1 m~~~~~~~~~~~~h~~~v~~i~~s~~~~~l---a~~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~ 73 (871)
|+..+.......+|..++..+.+..+...+ .....+....+|+....... .....|...|.+++|+|+|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 80 (393)
T 1erj_A 1 MDHYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLA 80 (393)
T ss_dssp --CCCCCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEE
T ss_pred CCcccCCccccccccccCCCccccCChhHCcHhHhccCCceEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEE
Confidence 444455555566677666544333332211 11223334557775543321 12225999999999999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEEEccCCC------------------CeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 002881 74 AGADDMFIRVYNYNTMDKVKVFEAHTD------------------YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (871)
Q Consensus 74 ~~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (871)
+|+ ++.+++|++.+++.+..+..|.. .|++++|+|++++|++|+.||.|++||++++ ...
T Consensus 81 ~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-~~~ 158 (393)
T 1erj_A 81 TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIV 158 (393)
T ss_dssp EEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEE
T ss_pred EEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence 986 68899999999998887765432 4999999999999999999999999999987 677
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEee-cCCcCEEEEEeCCCeEEEE
Q 002881 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVW 214 (871)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~~~dg~i~v~ 214 (871)
..+.+|...|.+++|+| +++.|++++.|++|++||+++++....+. +...+.+++|+| ++. ++++|+.||.|++|
T Consensus 159 ~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~--~l~~~s~d~~v~iw 234 (393)
T 1erj_A 159 MILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGK--YIAAGSLDRAVRVW 234 (393)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCC--EEEEEETTSCEEEE
T ss_pred EEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCC--EEEEEcCCCcEEEE
Confidence 78889999999999999 78999999999999999999887766665 567799999998 555 89999999999999
Q ss_pred ECCCCceEEEe-------cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC------------eEEEEEecCCccEE
Q 002881 215 DYQTKSCVQTL-------EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY------------RLENTLNYGLERVW 275 (871)
Q Consensus 215 d~~~~~~~~~~-------~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~ 275 (871)
|++++..+..+ .+|...|.+++|+|++.+|++|+.||.|++||+.+. .....+..|...|.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 314 (393)
T 1erj_A 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314 (393)
T ss_dssp ETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred ECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE
Confidence 99998887766 578899999999999999999999999999998753 34556777888999
Q ss_pred EEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 276 AIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
+++|+|++.+|++|+.||.+++|..
T Consensus 315 ~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 315 SVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999999999999999853
No 57
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.5e-34 Score=302.55 Aligned_cols=246 Identities=23% Similarity=0.347 Sum_probs=209.5
Q ss_pred ceeEEeeecCCCEEEEEE-----eC-CCCEEEEEeCCCeEEEEECCCC-------cEEEEEccCCCCeEEEEEcCCCCEE
Q 002881 48 TMAKSFEVTELPVRSAKF-----VA-RKQWVVAGADDMFIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTLPYV 114 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~l 114 (871)
.....+.+|..+|++++| ++ ++++|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 345678899999999999 76 8999999999999999998753 4567788999999999999999999
Q ss_pred EEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe---cCCCCeeEE
Q 002881 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQKGVNCV 191 (871)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~i 191 (871)
++|+.|+.|++||++++ .....+.+|...|.+++|+| +++.+++++.|++|++||+... ...... .|...|.++
T Consensus 92 ~s~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEETTSEEEEEETTSS-CEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEE
T ss_pred EEEcCCCcEEEEECCCC-cEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeee
Confidence 99999999999999988 66777889999999999999 8899999999999999999743 233332 577889999
Q ss_pred EEeecCCc--------CEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-Ce
Q 002881 192 DYFTGGDK--------PYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT-YR 262 (871)
Q Consensus 192 ~~~~~~~~--------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~-~~ 262 (871)
+|+|.+.. .++++++.||.|++||. +.+....+.+|...|.+++|+|++++|++|+.||.|++||+.+ ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 99998631 48999999999999994 5677788899999999999999999999999999999999843 33
Q ss_pred EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 263 ~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
....+. +...|.+++|+|+++++++|+ |+.+++|.
T Consensus 248 ~~~~~~-~~~~v~~v~~sp~~~~la~~~-d~~v~iw~ 282 (343)
T 2xzm_R 248 PQREFD-AGSTINQIAFNPKLQWVAVGT-DQGVKIFN 282 (343)
T ss_dssp CSEEEE-CSSCEEEEEECSSSCEEEEEE-SSCEEEEE
T ss_pred cceeec-CCCcEEEEEECCCCCEEEEEC-CCCEEEEE
Confidence 334443 346799999999998887654 66688874
No 58
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-34 Score=301.75 Aligned_cols=251 Identities=16% Similarity=0.250 Sum_probs=217.8
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC--CceeEEeeecCCCEEEEEEeCC--CCEEEEEeCCCeEEEE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVAR--KQWVVAGADDMFIRVY 84 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw 84 (871)
..+.+|.+.|.+++|+|+|++||+|+.||+|+|||+.+ ++.+..+.+|..+|.+++|+|+ +++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 35679999999999999999999999999999999874 3677889999999999999864 8999999999999999
Q ss_pred ECCCCc--EEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecCC-----
Q 002881 85 NYNTMD--KVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKD----- 154 (871)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~----- 154 (871)
|+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||++++. .....+.+|...|.+++|+|..
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 56677889999999999997 8899999999999999998752 2245677899999999999942
Q ss_pred -------CCEEEEEECCCcEEEEECCCCC----CeEEEecCCCCeeEEEEeecCC-cCEEEEEeCCCeEEEEECCCCc--
Q 002881 155 -------TNTFASASLDRTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKS-- 220 (871)
Q Consensus 155 -------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~-- 220 (871)
++.|++|+.|++|++||++++. ....+.+|...|.+++|+|++. ..+|++++.|+.|++||+++..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 4699999999999999998766 4456788999999999999851 2389999999999999998643
Q ss_pred -eEEEe--cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 221 -CVQTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 221 -~~~~~--~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
....+ ..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 22233 4678889999999999999999999999999965
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-36 Score=332.57 Aligned_cols=268 Identities=13% Similarity=0.135 Sum_probs=219.6
Q ss_pred CCCCEEEEEEcCCC---------CEEEEEE-------------------cCCeEEEEeCCCCcee----EEeeecCCCEE
Q 002881 14 RSERVKSVDLHPSE---------PWILASL-------------------YSGTVCIWNYQSQTMA----KSFEVTELPVR 61 (871)
Q Consensus 14 h~~~v~~i~~s~~~---------~~la~~~-------------------~dg~v~iwd~~~~~~~----~~~~~~~~~v~ 61 (871)
+.+.|.+++|+|++ ++||+|+ .||+|+|||+.+++.. ..+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56789999999986 6777744 6789999999887642 34566788999
Q ss_pred EEEEeCC------CCEEEEEeCCCeEEEEECCCCcE-----------EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 002881 62 SAKFVAR------KQWVVAGADDMFIRVYNYNTMDK-----------VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (871)
Q Consensus 62 ~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 124 (871)
+++|+|+ +.+||+++.||+|++||+.++.. ...+.+|...|++++|++++ .|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence 9999997 57999999999999999986642 24677899999999999864 899999999999
Q ss_pred EEECCCCceEEEEeecCCcceEEE--EEecCCC-CEEEEEECCCcEEEEECCCCCCeEEEecCCC--CeeEEEEeecCCc
Q 002881 125 LWDWEKGWMCTQIFEGHSHYVMQV--TFNPKDT-NTFASASLDRTIKIWNLGSPDPNFTLDAHQK--GVNCVDYFTGGDK 199 (871)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~v~~~--~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~ 199 (871)
+||++++......+.+|...|.++ .|+| ++ ++|++|+.|++|++||+++++....+.+|.. .|.+++|+|++.
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~- 368 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY- 368 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC-
Confidence 999997645556678999999999 4666 55 8999999999999999998877666666553 578999999877
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe-----cCCccE
Q 002881 200 PYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN-----YGLERV 274 (871)
Q Consensus 200 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~i 274 (871)
.+++++.|+.|++||++++.++.++.+|.+.|++++|+|++++|++|+.||+|++||.... ...... .....+
T Consensus 369 -~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v 446 (524)
T 2j04_B 369 -SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRL 446 (524)
T ss_dssp -EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEE
T ss_pred -eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEE
Confidence 6999999999999999999988889999999999999999999999999999999997653 211111 111257
Q ss_pred EEEEEeeCCCeE
Q 002881 275 WAIGYMKSSRRI 286 (871)
Q Consensus 275 ~~i~~~~~~~~l 286 (871)
++++|+|+++.+
T Consensus 447 ~~v~~sp~g~~~ 458 (524)
T 2j04_B 447 WKWDYSIKDDKY 458 (524)
T ss_dssp EECBCCSSSCEE
T ss_pred EEeccCCCCCeE
Confidence 899999998844
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-34 Score=313.62 Aligned_cols=276 Identities=20% Similarity=0.298 Sum_probs=248.2
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeee-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 96 (871)
+.+++|++ ..+++++.||.|++||..+++....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 173 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence 44577775 4577888899999999999998887776 78899999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (871)
.|...|.+++|+ +.+|++|+.||.|++||++........+.+|...|.+++|+| +++.|++++.||.|++||+++++
T Consensus 174 ~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 250 (401)
T 4aez_A 174 GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSI 250 (401)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSS
T ss_pred CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCC
Confidence 999999999995 579999999999999999965577788889999999999999 88999999999999999999999
Q ss_pred CeEEEecCCCCeeEEEEeecCCcCEEEEEe--CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE--CCCc
Q 002881 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS--EDGT 252 (871)
Q Consensus 177 ~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~--~dg~ 252 (871)
+...+..|...|.+++|+|++.. ++++++ .|+.|++||+.+++++..+. +...|.+++|+|+++.+++++ .||.
T Consensus 251 ~~~~~~~~~~~v~~~~~~p~~~~-ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 251 PKFTKTNHNAAVKAVAWCPWQSN-LLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp EEEEECCCSSCCCEEEECTTSTT-EEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred ccEEecCCcceEEEEEECCCCCC-EEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCc
Confidence 99999999999999999998765 677765 79999999999999988886 667899999999999999954 8999
Q ss_pred EEEEeCCCCeEEE--EEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 253 VRIWHATTYRLEN--TLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 253 v~iwd~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
|++|++.+++... .+..|...|.+++|+|++++|++++.||.+.+|..
T Consensus 329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred EEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 9999999876544 46678889999999999999999999999999843
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.5e-33 Score=298.27 Aligned_cols=303 Identities=19% Similarity=0.289 Sum_probs=247.4
Q ss_pred CCceeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc-----EEEEEccCCCCeEEEEEcCCCCEEEEEEC
Q 002881 46 SQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119 (871)
Q Consensus 46 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 119 (871)
+..+..++++|.++|++++|+|+ +++|++|+.||+|++||+.+.+ +...+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 34556679999999999999997 6899999999999999987643 46778899999999999999999999999
Q ss_pred CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCe-EEEecCCCCeeEEEEeecCC
Q 002881 120 DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN-FTLDAHQKGVNCVDYFTGGD 198 (871)
Q Consensus 120 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~i~~~~~~~ 198 (871)
|+.|++|+.... ........+...+....++| .++.+++++.|+.+++||+...... .....|...+.+++|++++.
T Consensus 107 d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTT-EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeeccc-ceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 999999999987 56666677888899999999 7889999999999999998765433 23356788999999999887
Q ss_pred cCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEE
Q 002881 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (871)
Q Consensus 199 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~ 278 (871)
..++++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+.++.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 263 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC 263 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee
Confidence 778999999999999999999999999999999999999999999999999999999999999998888766 6899999
Q ss_pred EeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCce
Q 002881 279 YMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQS 358 (871)
Q Consensus 279 ~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (871)
|+|++. +++++.|+.+.+|....... +........ ......+...+..
T Consensus 264 ~~~~~~-~~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~----------------------~~~~~~h~~~v~~ 311 (340)
T 4aow_A 264 FSPNRY-WLCAATGPSIKIWDLEGKII---------VDELKQEVI----------------------STSSKAEPPQCTS 311 (340)
T ss_dssp ECSSSS-EEEEEETTEEEEEETTTTEE---------EEEECCC-----------------------------CCCCCEEE
T ss_pred cCCCCc-eeeccCCCEEEEEECCCCeE---------EEeccccce----------------------eeeccCCCCCEEE
Confidence 999876 55666789999984332211 111000000 0001223345668
Q ss_pred EEECCCCCEEEEEc-CCcEEEEEeec
Q 002881 359 LKHNPNGRFVVVCG-DGEYIIYTALA 383 (871)
Q Consensus 359 ~~~s~~g~~lav~~-~~~~~i~~~~~ 383 (871)
++|+|+|++|++++ ||.+.+|++..
T Consensus 312 l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 312 LAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 88888888888776 78888887654
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=326.64 Aligned_cols=285 Identities=17% Similarity=0.246 Sum_probs=249.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC----CceeEEeeecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECC
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS----QTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 87 (871)
.|...|.+++|+|++++|++++.||.|++||+.+ .+....+..|..+|++++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 5889999999999999999999999999999987 4577888899999999999998 8999999999999999999
Q ss_pred CCc------EEEE---EccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecC------CcceEEEEEe
Q 002881 88 TMD------KVKV---FEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH------SHYVMQVTFN 151 (871)
Q Consensus 88 ~~~------~~~~---~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~ 151 (871)
+++ .... ...|...|.+++|+|+ +.+|++++.||.|++||++++ .....+..+ ...|.+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEEC
Confidence 876 3322 3578999999999999 789999999999999999988 555555555 7889999999
Q ss_pred cCCCCEEEEEECCC---cEEEEECCCC-CCeEEEe-cCCCCeeEEEEee-cCCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 152 PKDTNTFASASLDR---TIKIWNLGSP-DPNFTLD-AHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 152 p~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~i~~i~~~~-~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
|++..++++++.|+ .|++||++++ .+...+. .|...|.+++|+| ++. ++++++.||.|++||+++++++..+
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--~l~s~~~dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH--LLLSSGRDNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS--CEEEEESSSEEEEECSSSCCEEEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC--eEEEEeCCCCEEEeeCCCCccceee
Confidence 95568999999999 9999999986 5667777 8999999999999 665 7999999999999999999999999
Q ss_pred cCcccCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEe-----------------------------------c
Q 002881 226 EGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLN-----------------------------------Y 269 (871)
Q Consensus 226 ~~~~~~v~~i~~~p~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~-----------------------------------~ 269 (871)
..|...|.+++|+|++ .+|++++.||.|++|++.++....... .
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 9999999999999999 899999999999999998765321110 1
Q ss_pred CCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 270 GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 270 ~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
+..++.+++|+|+|++|++|+.||.|++|..
T Consensus 382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 382 YGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp TCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 3456779999999999999999999999853
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.9e-35 Score=321.12 Aligned_cols=290 Identities=17% Similarity=0.211 Sum_probs=238.6
Q ss_pred hhhhcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCceeE--EeeecCCCEEEEEEeC-CCCEEEEEeCCCeEE
Q 002881 7 IKRKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAK--SFEVTELPVRSAKFVA-RKQWVVAGADDMFIR 82 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 82 (871)
+.+...+|..+|+|++||| ++.+||+|+.||.|+|||+.+++... .+.+|.++|++++|+| ++++|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3445667899999999999 45689999999999999998776544 4457999999999998 689999999999999
Q ss_pred EEECCCCcEEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 83 VYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 83 iw~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
+||++++........ +...+.+++|+|++.+|++|+.||.|++||+++. ....+.+|...|.+++|+|.+..++++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEE
Confidence 999987654433333 3446789999999999999999999999999764 445677899999999999966779999
Q ss_pred EECCCcEEEEECCCCCCeEE---EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc------C
Q 002881 161 ASLDRTIKIWNLGSPDPNFT---LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------N 231 (871)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~ 231 (871)
++.|+.|++||+++.+.... ..+|..+|++++|+|++. +|++++.||.|++||+.++.....+..|.. .
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~--~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA--RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS--EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCC--eeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence 99999999999987664433 357889999999999887 899999999999999999888777765543 2
Q ss_pred eEEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCeEEEEEe-cCCccEEEE-EEeeCCCeEEEEEcCCeEEE
Q 002881 232 VSAVCFHPELPIIITGSE------------DGTVRIWHATTYRLENTLN-YGLERVWAI-GYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 232 v~~i~~~p~~~~l~~~~~------------dg~v~iwd~~~~~~~~~~~-~~~~~i~~i-~~~~~~~~l~~g~~dg~i~i 297 (871)
+....|+|++..+++++. ++.|++||..+++.+..+. .+...|.++ +|+|+|++|++|+ |+.|++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 345678888877777652 3579999999999887765 566678887 6999999999876 788999
Q ss_pred ecCC
Q 002881 298 KIGR 301 (871)
Q Consensus 298 ~~~~ 301 (871)
|...
T Consensus 426 W~~~ 429 (435)
T 4e54_B 426 WSQQ 429 (435)
T ss_dssp CCCC
T ss_pred EECC
Confidence 9544
No 64
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.9e-33 Score=304.93 Aligned_cols=276 Identities=17% Similarity=0.321 Sum_probs=247.6
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee--ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
+..|+||++ +.||+|. |++|+|||..+|+..+.+. .|...|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 456999986 4788876 9999999999999887766 46778999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 96 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
.+|...+.++.|+ +..|++|+.|+.+.+||..........+.+|...+..+.|+| ++..+++++.|+.+++|+..++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCC
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccc
Confidence 9999999998886 578999999999999999987777888899999999999999 8899999999999999999876
Q ss_pred C----CeEEEecCCCCeeEEEEeecCCcCEEEEE--eCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE-
Q 002881 176 D----PNFTLDAHQKGVNCVDYFTGGDKPYLITG--SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS- 248 (871)
Q Consensus 176 ~----~~~~~~~~~~~i~~i~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~- 248 (871)
+ .......|...|.+++|+|.+.. +++++ +.|+.|++||+.++++...+..+ ..+.++.|+|++..+++++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~-~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTT-EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEEC
T ss_pred cccceeeeeecccCCceeeeeeCCCccc-EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEe
Confidence 4 34667788999999999998765 55554 47899999999999998888754 5789999999999888765
Q ss_pred -CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 249 -EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 249 -~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
.||.|++||+.+++.+..+..|.+.|++++|+|+|++|++|+.||+|++|.-
T Consensus 341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 7899999999999999999999999999999999999999999999999953
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=319.15 Aligned_cols=287 Identities=13% Similarity=0.215 Sum_probs=243.0
Q ss_pred hhhc-ccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCC---Cc---eeEEeeecCCCEEEEEEeCCCCEEEEEeCCC
Q 002881 8 KRKL-AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS---QT---MAKSFEVTELPVRSAKFVARKQWVVAGADDM 79 (871)
Q Consensus 8 ~~~~-~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 79 (871)
...+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+ +. ....+ .|..+|++++|+|++++|++|+.||
T Consensus 55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 3455 78999999999999 999999999999999999876 33 23333 4899999999999999999999999
Q ss_pred eEEEEECC---CCcEEEEEc----------c--CCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCceEEEEeec--
Q 002881 80 FIRVYNYN---TMDKVKVFE----------A--HTDYIRCVA--VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-- 140 (871)
Q Consensus 80 ~i~iw~~~---~~~~~~~~~----------~--~~~~i~~i~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 140 (871)
.|++||+. +++....+. . +...+.++. +++++.+|++|+.||.|++||++++ .....+..
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~ 212 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-ERLQIIENSP 212 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-CEEEEEECCG
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eeeEEEccCC
Confidence 99999994 555444332 1 556677777 6688999999999999999999988 55666666
Q ss_pred CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe-cCCCCeeEEEEeec--CCcCEEEEEeCCCeEEEEECC
Q 002881 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTG--GDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 141 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~--~~~~~l~~~~~dg~i~v~d~~ 217 (871)
|...|.+++|+| ++++|++|+.||.|++||++++++...+. .+..+|.+++|+|. .++.++++|+.||.|++||++
T Consensus 213 h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 213 RHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp GGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 889999999999 79999999999999999999988888876 77889999988765 334489999999999999999
Q ss_pred CCceEEEecC--------------------------cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec--
Q 002881 218 TKSCVQTLEG--------------------------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-- 269 (871)
Q Consensus 218 ~~~~~~~~~~--------------------------~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-- 269 (871)
+++++..+.+ |...|++++|+ ++++|++|+.||.|++||+.+++....+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 9988777654 44568889999 678999999999999999998876655554
Q ss_pred -----------------------------------CCccEEEEEEeeC--CCeEEEEEcCCeEEEe
Q 002881 270 -----------------------------------GLERVWAIGYMKS--SRRIVIGYDEGTIMVK 298 (871)
Q Consensus 270 -----------------------------------~~~~i~~i~~~~~--~~~l~~g~~dg~i~i~ 298 (871)
|.+.|.+++|+++ +.+|++|+.||.|++|
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 6789999999998 7899999999999998
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=317.82 Aligned_cols=280 Identities=19% Similarity=0.316 Sum_probs=235.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc-----------eeEEeeecC------------CCEEEEEEeCCC-
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----------MAKSFEVTE------------LPVRSAKFVARK- 69 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~- 69 (871)
|.+.|++++|+|+|++||+|+.||.|+|||+.++. ....+.+|. .+|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999998876 577888898 889999999998
Q ss_pred -CEEEEEeCCCeEEEEECCCCcEE---------------------------------------EE-EccCCCCeEEEEEc
Q 002881 70 -QWVVAGADDMFIRVYNYNTMDKV---------------------------------------KV-FEAHTDYIRCVAVH 108 (871)
Q Consensus 70 -~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------~~-~~~~~~~i~~i~~~ 108 (871)
..|++++.||.|++|++.++... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 89999999999999998764432 12 35799999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCceEEE-------EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC----
Q 002881 109 PTLPYVLSSSDDMLIKLWDWEKGWMCTQ-------IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---- 177 (871)
Q Consensus 109 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---- 177 (871)
|++++|++| .||.|++||+++...... .+.+|...|.+++|+|++.++|++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 899999999995434444 25678999999999994349999999999999999998876
Q ss_pred eEEEecCCC------------CeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccC-------------
Q 002881 178 NFTLDAHQK------------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHN------------- 231 (871)
Q Consensus 178 ~~~~~~~~~------------~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~------------- 231 (871)
...+..+.. .|.+++|+|++. ++++++. +.|++||+++ ++++..+.+|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR--YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSS--EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCC--EEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 678887775 899999999887 7999988 9999999997 8888888877542
Q ss_pred --eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe--------------------------------cCCccEEEE
Q 002881 232 --VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN--------------------------------YGLERVWAI 277 (871)
Q Consensus 232 --v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------------------------~~~~~i~~i 277 (871)
+..++|+|++++|++|+.||.|++||+.+++.+.... .....|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 3349999999999999999999999999887653211 112468899
Q ss_pred EEeeCCCeEEEEEcCCeEEE
Q 002881 278 GYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 278 ~~~~~~~~l~~g~~dg~i~i 297 (871)
+|+|+++.||+++.++...+
T Consensus 423 ~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 423 AWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp EECSSSSEEEEECSSCEEEE
T ss_pred EECCCCCEEEEEecceeeee
Confidence 99999999999998885544
No 67
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.6e-34 Score=304.77 Aligned_cols=277 Identities=13% Similarity=0.139 Sum_probs=244.4
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc---eeEEeeecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEE
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYN 85 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~ 85 (871)
...+|.+.|.+++|+|++++|++++.||.|+||++.++. ....+..|..+|.+++|+|+++ +|++|+.||.|++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345899999999999999999999999999999998877 3455568999999999999999 999999999999999
Q ss_pred C-CCCcEEEEEcc--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---------CceEEEEeecCCcceEEEEEecC
Q 002881 86 Y-NTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---------GWMCTQIFEGHSHYVMQVTFNPK 153 (871)
Q Consensus 86 ~-~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~p~ 153 (871)
+ .+++. ..+.. |...|.+++|+| +.+|++++.||.|++||+++ + .....+. |...|.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~v~~~~~~~- 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKNKIFTMDTNS- 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCCCEEEEEECS-
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC-CeeeEEe-eCCceEEEEecC-
Confidence 9 87655 67778 999999999999 99999999999999999886 4 3333344 888999999998
Q ss_pred CCCEEEEEECCCcEEEEECCC-CC--CeEEEecCCCCeeEEEEee-cCCcCEEEEEeCCCeEEEEECCCC------ceEE
Q 002881 154 DTNTFASASLDRTIKIWNLGS-PD--PNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWDYQTK------SCVQ 223 (871)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~~~dg~i~v~d~~~~------~~~~ 223 (871)
+. +++++.|+.|++||+++ +. .......+...+.+++|+| ++. ++++++.+|.|++|+++.. +...
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE--GYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC--EEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC--EEEEEecCCcEEEEEEcCCCcccccccce
Confidence 33 99999999999999988 54 3344556788999999999 876 8999999999999999876 7777
Q ss_pred EecCccc---------CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC-CccEEEEEEeeCCCeEEEEEcCC
Q 002881 224 TLEGHTH---------NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 224 ~~~~~~~---------~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~g~~dg 293 (871)
.+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ...|.+++ |++++|++|+.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 8887755 9999999999999999999999999999999999999988 89999999 9999999999999
Q ss_pred e-EEE
Q 002881 294 T-IMV 297 (871)
Q Consensus 294 ~-i~i 297 (871)
. ...
T Consensus 315 ~~~~~ 319 (342)
T 1yfq_A 315 TFKTN 319 (342)
T ss_dssp HHHHC
T ss_pred ccccc
Confidence 8 443
No 68
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-35 Score=322.10 Aligned_cols=284 Identities=11% Similarity=0.124 Sum_probs=232.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC--ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
+..|.++|.+++|+|++++|++|+.||.|+|||+.++ +....+..|..+|.+++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4457789999999999999999999999999999988 67788889999999999999999999999999999999998
Q ss_pred Cc---EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCce--EEEEeec-CCcceEEEEEecCCCCEEEEEE
Q 002881 89 MD---KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM--CTQIFEG-HSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 89 ~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
++ ....+..|...|.+++|+|++++|++|+.|+.|++||++++.. ....+.. |...|.+++|+| ++++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~ 165 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGC 165 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEe
Confidence 77 6677788999999999999999999999999999999998732 3455666 999999999999 889999999
Q ss_pred CCCcEEEEECCC------------------CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce---
Q 002881 163 LDRTIKIWNLGS------------------PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--- 221 (871)
Q Consensus 163 ~dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--- 221 (871)
.||.|++||+.. ++....+ .|...|.+++|+|++. ++++++.||.|++||+.+++.
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~--~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN--ALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS--CEEEEETTTEEC-CEECSTTSCEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC--EEEEEeCCCcEEEEECCCCCCcce
Confidence 999999999853 2233334 7889999999999887 799999999999999999887
Q ss_pred -EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe------E---------------------E---------
Q 002881 222 -VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR------L---------------------E--------- 264 (871)
Q Consensus 222 -~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~------~---------------------~--------- 264 (871)
+..+.+|...|.+++|+|++.+|++|+.++.+ +|+..... . .
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALR 321 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----------
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccc
Confidence 78888999999999999999999888766555 66654111 0 0
Q ss_pred EEE----------------ecCCccEEEEEEeeCCC----eEEEEEcCCeEEEec
Q 002881 265 NTL----------------NYGLERVWAIGYMKSSR----RIVIGYDEGTIMVKI 299 (871)
Q Consensus 265 ~~~----------------~~~~~~i~~i~~~~~~~----~l~~g~~dg~i~i~~ 299 (871)
..+ ..|.+.|.++.+.+... .+++|+.||.|++|.
T Consensus 322 ~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 322 STFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ---------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred ccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 001 12778899999776543 599999999999983
No 69
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-34 Score=305.38 Aligned_cols=253 Identities=17% Similarity=0.216 Sum_probs=210.7
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIR 82 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 82 (871)
+...+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|..+|.+++|+| ++++|++|+.|++|+
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp ---------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred eeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 455678999999999999999999999999999999998774 4677889999999999986 489999999999999
Q ss_pred EEECCCC--cEEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCce--EEEEeecCCcceEEEEEecCC--
Q 002881 83 VYNYNTM--DKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWM--CTQIFEGHSHYVMQVTFNPKD-- 154 (871)
Q Consensus 83 iw~~~~~--~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~-- 154 (871)
+||+.++ .....+.+|...|.+++|+|+ +.+|++|+.||.|++||++++.. ....+.+|...|.+++|+|..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999887 456778899999999999998 78999999999999999987522 244567899999999999942
Q ss_pred --------------CCEEEEEECCCcEEEEECCCC---CCeEEEecCCCCeeEEEEeecC--CcCEEEEEeCCCeEEEEE
Q 002881 155 --------------TNTFASASLDRTIKIWNLGSP---DPNFTLDAHQKGVNCVDYFTGG--DKPYLITGSDDHTAKVWD 215 (871)
Q Consensus 155 --------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~--~~~~l~~~~~dg~i~v~d 215 (871)
+.+|++|+.|++|++||++.. +....+.+|...|.+++|+|++ ...+|++++.||.|++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 368999999999999999754 2455677899999999999986 123899999999999999
Q ss_pred CCCCc----eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 216 YQTKS----CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 216 ~~~~~----~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
+.+.. ....+..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 87621 223445688899999999999999999999999999965
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-33 Score=308.91 Aligned_cols=287 Identities=13% Similarity=0.168 Sum_probs=243.0
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
..+..| ..+....|+|++++|++|+.||.|++||+.+++....+..|..+|++++|+|++++|++|+.||.|++||+.+
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 334444 4455567899999999999999999999999998888889999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeec---CCcceEEEEE---------------
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG---HSHYVMQVTF--------------- 150 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~--------------- 150 (871)
++.+..+.+|...|.+++|+|++++|++++.||.|++||++++ .....+.. |...+.++.|
T Consensus 171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 9999999999999999999999999999999999999999988 55555553 4445555555
Q ss_pred ------ecCCCCEEEEEECCCcEEEEECCCCCCeEEEe-cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-E
Q 002881 151 ------NPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-V 222 (871)
Q Consensus 151 ------~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~ 222 (871)
+| +++++++++.||.|++||+++++....+. .|...|.+++|+|++.. ++++|+.||.|++||+++++. +
T Consensus 250 v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~ 327 (420)
T 3vl1_A 250 KNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNAN-YIYAGYENGMLAQWDLRSPECPV 327 (420)
T ss_dssp CCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCTTSCS
T ss_pred ccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCC-EEEEEeCCCeEEEEEcCCCcCch
Confidence 56 77899999999999999999988777664 47789999999998764 799999999999999998754 6
Q ss_pred EEecC-cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---------eEEEEEecCCccEEEEEEeeCCC---eEEEE
Q 002881 223 QTLEG-HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY---------RLENTLNYGLERVWAIGYMKSSR---RIVIG 289 (871)
Q Consensus 223 ~~~~~-~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~i~~~~~~~---~l~~g 289 (871)
..+.. |...|.++.+ |++.+|++++.||.|++|++.+. .....+..+.+.+.+++|+|+++ .+++.
T Consensus 328 ~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~ 406 (420)
T 3vl1_A 328 GEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV 406 (420)
T ss_dssp EEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred hhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence 66766 6667888855 56789999999999999998763 12234556678899999999999 78888
Q ss_pred EcCCeEEEecC
Q 002881 290 YDEGTIMVKIG 300 (871)
Q Consensus 290 ~~dg~i~i~~~ 300 (871)
+.+|.+.+|..
T Consensus 407 g~~g~~~~~~~ 417 (420)
T 3vl1_A 407 GKNNFCALYNL 417 (420)
T ss_dssp ETTTEEEEEES
T ss_pred cCCceEEEEec
Confidence 88999988743
No 71
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-32 Score=291.12 Aligned_cols=244 Identities=21% Similarity=0.317 Sum_probs=217.0
Q ss_pred eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 002881 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~ 128 (871)
....+.+|..+|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-----CcEEEEECCCCC-----------CeEEEecCCC--CeeE
Q 002881 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-----RTIKIWNLGSPD-----------PNFTLDAHQK--GVNC 190 (871)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~-----------~~~~~~~~~~--~i~~ 190 (871)
.++ .....+. +...+.+++|+| +++.+++++.+ |.|.+||+.... ....+..+.. .+.+
T Consensus 104 ~~~-~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNG-QCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTC-CEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCC-cEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 988 4455555 788899999999 88999999999 999999997654 3444555555 8999
Q ss_pred EEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 002881 191 VDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (871)
Q Consensus 191 i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (871)
++|+|++. ++++++.+|.|++||+++ +..+..+..|...|.+++|+|++.+|++++.||.|++||+.+++....+.
T Consensus 181 ~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 181 AGWSTKGK--YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EEECGGGC--EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred EEEcCCCC--EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence 99999887 799999999999999998 78888999999999999999999999999999999999999999888887
Q ss_pred CCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 270 GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 270 ~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+...+.+++|+|+++.+++++.++...++
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 55789999999999999999999876654
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-32 Score=321.89 Aligned_cols=249 Identities=24% Similarity=0.362 Sum_probs=218.7
Q ss_pred eeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC-----cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCe
Q 002881 49 MAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM-----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 122 (871)
....+.+|...|++++|+|++ ++|++|+.|++|++|++.+. .....+.+|...|.+++|+|++++|++|+.||.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345678999999999999875 79999999999999998753 345678899999999999999999999999999
Q ss_pred EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE---ecCCCCeeEEEEeecCCc
Q 002881 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAHQKGVNCVDYFTGGDK 199 (871)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~ 199 (871)
|++||+.++ .....+.+|...|.+++|+| +++.|++++.|++|++||.......... .+|...|.+++|+|++..
T Consensus 454 v~vwd~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 454 LRLWDLAAG-VSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEETTTT-EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEEEECCCC-cceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 999999988 66778889999999999999 8899999999999999998654322221 357788999999998865
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEE
Q 002881 200 PYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (871)
Q Consensus 200 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~ 279 (871)
.++++++.|+.|++||++++++...+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+.+++|
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 610 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCF 610 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEE
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999988877654 67999999
Q ss_pred eeCCCeEEEEEcCCeEEEecCC
Q 002881 280 MKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 280 ~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
+|++..++++++ +.|++|...
T Consensus 611 sp~~~~l~~~~~-~~i~iwd~~ 631 (694)
T 3dm0_A 611 SPNRYWLCAATE-HGIKIWDLE 631 (694)
T ss_dssp CSSSSEEEEEET-TEEEEEETT
T ss_pred cCCCcEEEEEcC-CCEEEEECC
Confidence 999988877665 458887543
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.6e-33 Score=288.43 Aligned_cols=249 Identities=19% Similarity=0.283 Sum_probs=214.2
Q ss_pred EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEE
Q 002881 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLW 126 (871)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iw 126 (871)
..+.+|...|++++|+|+|++|++|+.|++|++|++.+ .+.+..+.+|.++|.+++|+|+ +++|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999974 3677889999999999999864 8899999999999999
Q ss_pred ECCCCc-eEEEEeecCCcceEEEEEecCC-CCEEEEEECCCcEEEEECCCCC--CeEEEecCCCCeeEEEEeecCC----
Q 002881 127 DWEKGW-MCTQIFEGHSHYVMQVTFNPKD-TNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGD---- 198 (871)
Q Consensus 127 d~~~~~-~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~---- 198 (871)
|++++. .....+..|...|.+++|+|+. +.+|++++.||+|++||++++. ....+.+|...|.+++|+|++.
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998763 3445677899999999999932 7899999999999999998763 2456788999999999999731
Q ss_pred -------cCEEEEEeCCCeEEEEECCCCc----eEEEecCcccCeEEEEEcCCC---CEEEEEECCCcEEEEeCCCCe--
Q 002881 199 -------KPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPEL---PIIITGSEDGTVRIWHATTYR-- 262 (871)
Q Consensus 199 -------~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~i~~~p~~---~~l~~~~~dg~v~iwd~~~~~-- 262 (871)
..+|++|+.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++.|++|++||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 2389999999999999998765 567888999999999999985 799999999999999987643
Q ss_pred -EEEEE--ecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 263 -LENTL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 263 -~~~~~--~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
....+ ..+...|++++|+|+++.|++++.||.+++|.
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 22233 34567899999999999999999999999984
No 74
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=283.21 Aligned_cols=277 Identities=16% Similarity=0.286 Sum_probs=243.5
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee--ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
..+|+||+++ .||+|. |++|+|||+.+++.++.+. .|...|++++|+|++++|++|+.||.|++|++++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999986 777765 9999999999999888776 46778999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 96 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
.+|...+.++.+. +..+++++.++.+.+|+..........+.+|...+..+.+++ +++.+++++.||.|++||++++
T Consensus 106 ~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 106 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCB
T ss_pred cCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCC
Confidence 9999988876655 578999999999999999988778888899999999999999 8899999999999999999876
Q ss_pred CC----eEEEecCCCCeeEEEEeecCCcCE-EEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE--
Q 002881 176 DP----NFTLDAHQKGVNCVDYFTGGDKPY-LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS-- 248 (871)
Q Consensus 176 ~~----~~~~~~~~~~i~~i~~~~~~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~-- 248 (871)
+. ......+...|.++.++|.+...+ +++++.++.|++||........... +...+..+.|+|++..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECT
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEc
Confidence 53 355567788999999998876522 2355678999999999877766554 677899999999999887765
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
.||.|++||+.+++.+..+..|.+.|++++|+|++++|++|+.||+|++|.-
T Consensus 262 ~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 7999999999999999999999999999999999999999999999999954
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-31 Score=297.96 Aligned_cols=317 Identities=21% Similarity=0.304 Sum_probs=261.0
Q ss_pred ceeEEeeecCCCE-EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002881 48 TMAKSFEVTELPV-RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (871)
Q Consensus 48 ~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iw 126 (871)
.....+.+|...+ .++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++ .|++|+.||.|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788888775 55555 56799999999999999999999999999999999999999988 99999999999999
Q ss_pred ECCCCceEEEEeecCCcceEEEEEec-CCCCEEEEEECCCcEEEEECCCCCC-----------------------eEEEe
Q 002881 127 DWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASASLDRTIKIWNLGSPDP-----------------------NFTLD 182 (871)
Q Consensus 127 d~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------~~~~~ 182 (871)
|++++ .....+.+|...|.+++|+| .+++++++++.||.|++||+++... ...+.
T Consensus 189 d~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTT-EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCC-cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 99988 67778889999999999995 2668999999999999999987653 33556
Q ss_pred cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 002881 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 183 ~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~ 262 (871)
+|...+.++ +++++ ++++++.||.|++||+.+++++..+.+|...|.+++|+|+++++++|+.||.|++||+.+++
T Consensus 268 ~~~~~v~~~--~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 268 GHMASVRTV--SGHGN--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CCSSCEEEE--EEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred CccceEEEE--cCCCC--EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 777777776 45665 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCee
Q 002881 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (871)
Q Consensus 263 ~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (871)
.+..+..|...|.+++|+ ++.+++|+.||.+++|...... .. ...
T Consensus 344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---------~~---------~~~--------------- 388 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---------RK---------FSY--------------- 388 (464)
T ss_dssp EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---------EE---------EEE---------------
T ss_pred EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---------ee---------eee---------------
Confidence 999999999999999997 5899999999999998443211 10 000
Q ss_pred eeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeeccc------ccCcCceeEEEEecCCcEEEEec-CCeEEEe
Q 002881 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR------NRSFGSALEFVWSSDGEYAVRES-SSKIKIF 415 (871)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~------~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~ 415 (871)
.....+..+.++|++++++++++|.+.+|+..... ..+.+.+.+++|+ ++.+++..+ ++.+.+|
T Consensus 389 --------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 389 --------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp --------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred --------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 01123457889999999999999999999876543 2344677888886 333333333 5655555
Q ss_pred e
Q 002881 416 S 416 (871)
Q Consensus 416 ~ 416 (871)
-
T Consensus 460 ~ 460 (464)
T 3v7d_B 460 I 460 (464)
T ss_dssp E
T ss_pred E
Confidence 3
No 76
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=294.82 Aligned_cols=287 Identities=14% Similarity=0.190 Sum_probs=244.2
Q ss_pred hhhhhhcccCCCCEEEEEEcCC---CCEEEEEEcCCeEEEEeCCC-Ccee-EEeeecCCCEEEEEEeCCCCEEEEEeCCC
Q 002881 5 LEIKRKLAQRSERVKSVDLHPS---EPWILASLYSGTVCIWNYQS-QTMA-KSFEVTELPVRSAKFVARKQWVVAGADDM 79 (871)
Q Consensus 5 ~~~~~~~~~h~~~v~~i~~s~~---~~~la~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 79 (871)
++....+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +... ..+..|..+|++++|+|++++|++++.||
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 3445678899999999999999 59999999999999999987 5544 77888999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEEccCCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCE
Q 002881 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAV--HPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
.|++||+.+++... +..|...|++++| +|++.+|++++.||.|++||++++ .....+..+. .+.++.+.+ ..
T Consensus 109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~~---~~ 182 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-NPMMVLQLPE-RCYCADVIY---PM 182 (368)
T ss_dssp EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-SCSEEEECSS-CEEEEEEET---TE
T ss_pred cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-cEEEEEecCC-CceEEEecC---Ce
Confidence 99999999988766 5569999999999 899999999999999999999987 4455555554 577777764 58
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEe--cCCCCeeEEEEeecCCc--CEEEEEeCCCeEEEEECCCC---ceEEEecCccc
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDK--PYLITGSDDHTAKVWDYQTK---SCVQTLEGHTH 230 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~--~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~ 230 (871)
+++++.++.+.+|+++......... .+...+.++.+.+.... ..+++++.||.|++|+++.. ..+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 8899999999999998765443332 23455677777766542 24999999999999999987 55677777766
Q ss_pred ------------CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 231 ------------NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 231 ------------~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
.|++++|+|++++|++++.||.|++||+.+++.+..+..+...|.+++|+|++++|++|+.|+....
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999885443
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=314.31 Aligned_cols=262 Identities=8% Similarity=0.082 Sum_probs=217.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
+.-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+. +.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~---~~ 76 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELA---QQ 76 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCC---CS
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeC---CC
Confidence 34568899999999999999999999999 755554 447899999999999999 4565555553 32
Q ss_pred EEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCc-----ceEEEEEecCCCCEEEEEECCC
Q 002881 92 VKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH-----YVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 92 ~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~dg 165 (871)
...+. .|.+.|.+++|||+|..|++++.||.|++||.++ +...+. |.. .+.+++|+| ++++|++|+.||
T Consensus 77 ~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DG 151 (588)
T 2j04_A 77 NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDG 151 (588)
T ss_dssp SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTS
T ss_pred ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCC
Confidence 22333 5688999999999999999999999999999543 455555 655 499999999 899999999999
Q ss_pred cEEEEECCCCCC-------eEEE----ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce---EEEe-cCccc
Q 002881 166 TIKIWNLGSPDP-------NFTL----DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC---VQTL-EGHTH 230 (871)
Q Consensus 166 ~i~i~d~~~~~~-------~~~~----~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~-~~~~~ 230 (871)
+|++||+.++.. ..++ .+|...|.+++|+|++ +++++.|+.|++||+.++.. ..++ .+|..
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 999999988753 4555 5667899999999976 78889999999999987763 3556 47888
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEE--eeCCCeEEEEEcCCeEEEecCC
Q 002881 231 NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY--MKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 231 ~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
.|.+++|+ +..+++++ +|+|++||+.+++.......|.+.++++++ +|+++.+++++.+|. ++|...
T Consensus 228 ~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 228 KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999999 58899887 699999999988875544468899999999 999999999999999 888554
No 78
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=315.16 Aligned_cols=334 Identities=11% Similarity=0.073 Sum_probs=243.1
Q ss_pred ceeEEeeecCCCEEEEEEeCCC---------CEEEE-------------------EeCCCeEEEEECCCCcEE----EEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARK---------QWVVA-------------------GADDMFIRVYNYNTMDKV----KVF 95 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~---------~~l~~-------------------~~~dg~i~iw~~~~~~~~----~~~ 95 (871)
.....+. +.++|.+++|+|++ ++||+ ++.|++|+||++.+++.. ..+
T Consensus 125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l 203 (524)
T 2j04_B 125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI 203 (524)
T ss_dssp SCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE
T ss_pred cceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE
Confidence 3333444 56788888888876 56666 446889999999877642 345
Q ss_pred ccCCCCeEEEEEcCC------CCEEEEEECCCeEEEEECCCCce----------EEEEeecCCcceEEEEEecCCCCEEE
Q 002881 96 EAHTDYIRCVAVHPT------LPYVLSSSDDMLIKLWDWEKGWM----------CTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 96 ~~~~~~i~~i~~~~~------~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
..|.+.|.+++|+|+ +.+|++++.||+|++||+.++.. ....+.+|...|++++|+| + ..|+
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~la 281 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVV 281 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEE
Confidence 678889999999996 57999999999999999986521 1235678999999999998 3 5899
Q ss_pred EEECCCcEEEEECCCC-CCeEEEecCCCCeeEEE--EeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc--CeEE
Q 002881 160 SASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVD--YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH--NVSA 234 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~--~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~ 234 (871)
+|+.||+|++||++++ .+...+..|...|.+++ |+|++. .+|++++.|++|++||+++++++.++.+|.. .|.+
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~-~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFED-TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSC-CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCC-eEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence 9999999999999876 45567889999999994 555552 2899999999999999998887766666653 5889
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcE
Q 002881 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKI 314 (871)
Q Consensus 235 i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~ 314 (871)
++|+|+++.+++++.|++|++||++++....++..|.+.|++++|+|+++.|++|+.||++++|............
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~---- 436 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKN---- 436 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcccccc----
Confidence 9999999999999999999999999998878888899999999999999999999999999998532211100000
Q ss_pred EEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeecc----cccCcC
Q 002881 315 IWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAW----RNRSFG 390 (871)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~----~~~~~~ 390 (871)
... ......+..++|+|+|+.+....+..+..+..... -..+.+
T Consensus 437 ------------------------~~~--------~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~ 484 (524)
T 2j04_B 437 ------------------------SSA--------TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI 484 (524)
T ss_dssp ------------------------------------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC
T ss_pred ------------------------Ccc--------ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc
Confidence 000 00001223567888887554433222222221110 123446
Q ss_pred ceeEEEEecCCc---EEEEec-CCeEEEeeccccc
Q 002881 391 SALEFVWSSDGE---YAVRES-SSKIKIFSKNFQE 421 (871)
Q Consensus 391 ~~~~~~~s~~~~---~~~~~~-~~~i~i~~~~~~~ 421 (871)
.+.+++|+|++. ++++++ +|.|+||++....
T Consensus 485 ~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 485 NITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp SCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred eEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 788999999864 777777 6999999876654
No 79
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.8e-33 Score=296.14 Aligned_cols=261 Identities=12% Similarity=0.199 Sum_probs=226.6
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC----ceeEEeeecCCCEEEEEEeC--CCCEEEEEeCCCe
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMF 80 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 80 (871)
+++.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+..|..+|++++|+| ++++|++|+.||.
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 34567899999999999999999999999999999999876 46677788999999999999 6999999999999
Q ss_pred EEEEECCCC---------cEEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCceEEEE------------
Q 002881 81 IRVYNYNTM---------DKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQI------------ 137 (871)
Q Consensus 81 i~iw~~~~~---------~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~------------ 137 (871)
|++||+.++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||++++......
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999887 567888899999999999999 999999999999999999876322111
Q ss_pred eecCCcceEEEEEecC--CCCEEEEEECCCcEEEEECCCCCC--eEEEecCCCCeeEEEEeecCCc--CEEEEEeCCCeE
Q 002881 138 FEGHSHYVMQVTFNPK--DTNTFASASLDRTIKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDK--PYLITGSDDHTA 211 (871)
Q Consensus 138 ~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~--~~l~~~~~dg~i 211 (871)
...|...+.++.|+|. ++..+++++.++.+.+|+...+.. ...+.+|...|.+++|+|++.. .++++++.||.|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 1257788999999994 388999999999998888877664 5566789999999999999732 389999999999
Q ss_pred EEEECCCC----------------------------------------------ceEEEecCcccCeEEEEEcCCCCEEE
Q 002881 212 KVWDYQTK----------------------------------------------SCVQTLEGHTHNVSAVCFHPELPIII 245 (871)
Q Consensus 212 ~v~d~~~~----------------------------------------------~~~~~~~~~~~~v~~i~~~p~~~~l~ 245 (871)
++||++++ +.+..+.+|...|++++|+|++++|+
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence 99999864 56777888999999999999999999
Q ss_pred EEECCCcEEEEeCCCCeEEEEE
Q 002881 246 TGSEDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~ 267 (871)
+++.||.|++|++.+++....+
T Consensus 323 s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEETTSCEEEEEECTTSCEEEE
T ss_pred EecCCCcEEEEecCcCcchhhe
Confidence 9999999999999987655443
No 80
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.2e-32 Score=301.20 Aligned_cols=271 Identities=25% Similarity=0.446 Sum_probs=247.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 92 (871)
+|...|.+++| ++++|++|+.||.|++||..+++....+.+|..+|.+++| +++.|++|+.||.|++||+.+++.+
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 46677998887 7899999999999999999999999999999999999998 7889999999999999999999999
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE--EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 93 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
..+..|...|.+++|++ ..+++|+.||.|++||++++... ...+.+|...|.+++|+ ++.+++|+.||.|++|
T Consensus 207 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVW 281 (435)
T ss_dssp EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEE
T ss_pred EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEE
Confidence 99999999999999974 58999999999999999876433 26778899999999994 5799999999999999
Q ss_pred ECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECC
Q 002881 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED 250 (871)
Q Consensus 171 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d 250 (871)
|+++++....+..|...|.++.+. +. ++++|+.||.|++||+++++++..+.+|...|.+++| ++.+|++|+.|
T Consensus 282 d~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 282 NTSTCEFVRTLNGHKRGIACLQYR--DR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEE--TT--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred ECCcCcEEEEEcCCCCcEEEEEeC--CC--EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC
Confidence 999999999999999999999984 33 8999999999999999999999999999999999999 67899999999
Q ss_pred CcEEEEeCCCCe---------EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 251 GTVRIWHATTYR---------LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 251 g~v~iwd~~~~~---------~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
|.|++||+.++. ....+..|.+.|.+++| +++.|++|+.||.+.+|..
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 999999987665 78888899999999999 7889999999999999843
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=298.25 Aligned_cols=288 Identities=16% Similarity=0.291 Sum_probs=243.9
Q ss_pred hhhcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCceeEEee-------------ecCCCEEEEEEeC-CCCEE
Q 002881 8 KRKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFE-------------VTELPVRSAKFVA-RKQWV 72 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~l 72 (871)
...+.+|.++|++++|+| ++++|++|+.||.|++||+.++.....+. .|..+|.+++|+| ++..|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 455678999999999999 99999999999999999999876554443 4889999999999 78899
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEE
Q 002881 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT 149 (871)
Q Consensus 73 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 149 (871)
++++.||.|++||+.+++....+. +...+.++.|+|.+ .++++++.||.|.+||++++ .....+..|...|.+++
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEEECCCCSCEEEEE
T ss_pred EEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCCCcEEEEE
Confidence 999999999999999998888776 67889999999954 49999999999999999987 56677788999999999
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCC-CeEEE---------------ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEE
Q 002881 150 FNPKDTNTFASASLDRTIKIWNLGSPD-PNFTL---------------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (871)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v 213 (871)
|+|++..++++++.||.|++||++.+. +...+ ..|...|.+++|+|++. ++++++.||.|++
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~v 271 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL--HLLTVGTDNRMRL 271 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC--EEEEecCCCeEEE
Confidence 999544479999999999999998765 33333 46788999999999877 8999999999999
Q ss_pred EECCCCceEEEecCcc-----cCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEE
Q 002881 214 WDYQTKSCVQTLEGHT-----HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (871)
Q Consensus 214 ~d~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 288 (871)
||+.+++.......+. ..+........+..+++++.++.|++||+.+++.+..+..|.+.|.+++|+|++++|++
T Consensus 272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 9999887654443221 12222222334456777788999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEec
Q 002881 289 GYDEGTIMVKI 299 (871)
Q Consensus 289 g~~dg~i~i~~ 299 (871)
|+.||.+.+|.
T Consensus 352 ~~~dg~i~iw~ 362 (408)
T 4a11_B 352 GSRDCNILAWV 362 (408)
T ss_dssp EETTSCEEEEE
T ss_pred ECCCCeEEEEe
Confidence 99999999983
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.1e-32 Score=296.16 Aligned_cols=294 Identities=16% Similarity=0.210 Sum_probs=236.8
Q ss_pred eCCCCceeEEeeecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEc--cCCCCeEEEEEcC-CCCEEEEEE
Q 002881 43 NYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDKVKVFE--AHTDYIRCVAVHP-TLPYVLSSS 118 (871)
Q Consensus 43 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~i~~~~-~~~~l~~~~ 118 (871)
+..+......+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++.+|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 334566777888999999999999999 999999999999999999888877775 6999999999999 678999999
Q ss_pred CCCeEEEEECCCCceEEEEeec---CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEee
Q 002881 119 DDMLIKLWDWEKGWMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT 195 (871)
Q Consensus 119 ~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 195 (871)
.||.|++||+++. . ...+.. |...|.+++|+| +++.+++++.||.|++||+ .+++...+..|...|.+++|+|
T Consensus 139 ~d~~i~iwd~~~~-~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 139 IRGATTLRDFSGS-V-IQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp TTTEEEEEETTSC-E-EEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred CCCEEEEEECCCC-c-eEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 9999999999964 3 333333 347899999999 8899999999999999999 5678888899999999999999
Q ss_pred cCCcCEEEEEeCCCeEEEEECCC----CceEEEecCcccCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecC
Q 002881 196 GGDKPYLITGSDDHTAKVWDYQT----KSCVQTLEGHTHNVSAVCFHP-ELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 196 ~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (871)
++.. ++++++.|+.|++||+++ +.++..+ +|...|++++|+| ++.+|++++.||.|++||+.+++....+..+
T Consensus 215 ~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 215 RCDW-LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp SCTT-EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCCC-EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 8764 799999999999999987 5566666 5899999999999 9999999999999999999988765555433
Q ss_pred C-----------------ccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcc
Q 002881 271 L-----------------ERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD 333 (871)
Q Consensus 271 ~-----------------~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (871)
. +.+..++++|++++ +|+.||.+.+|..... +.+.. +
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---------~~~~~---------l------ 346 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---------GLVHQ---------L------ 346 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---------CEEEE---------E------
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---------ceeee---------e------
Confidence 2 23444566666655 6668888888743211 11100 0
Q ss_pred eeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEee
Q 002881 334 YEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTAL 382 (871)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~ 382 (871)
........+..++|+|+|++|++++++.+.+|+..
T Consensus 347 --------------~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~ 381 (383)
T 3ei3_B 347 --------------RDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRE 381 (383)
T ss_dssp --------------CBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC
T ss_pred --------------cCCCCCceEEEEEEecCccEEEEecCCcEEEEecC
Confidence 00112334557799999999999999999999754
No 83
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-31 Score=295.97 Aligned_cols=276 Identities=28% Similarity=0.492 Sum_probs=251.6
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 86 (871)
....+.+|.+.|.+++|+ +.++++|+.||.|++||+.+++.+..+.+|..+|.++.|+ ++.+++|+.||.|++||+
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence 445678999999999998 5689999999999999999999999999999999999996 567999999999999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
.+++.+..+.+|...|.+++| ++.++++|+.||.|++||++++ .....+.+|...|.++.| ++..+++++.||.
T Consensus 227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~ 300 (445)
T 2ovr_B 227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTS 300 (445)
T ss_dssp SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE---CSSEEEEEETTSC
T ss_pred CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE---CCCEEEEEeCCCe
Confidence 999999999999999999999 6788999999999999999988 677778899999999999 4689999999999
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC---cccCeEEEEEcCCCCE
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---HTHNVSAVCFHPELPI 243 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~~i~~~p~~~~ 243 (871)
|++||+++++....+..|...+.++.+. ++ ++++|+.||.|++||+++++++..+.. |...|++++|+ +++
T Consensus 301 i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 301 IRVWDVETGNCIHTLTGHQSLTSGMELK--DN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp EEEEETTTCCEEEEECCCCSCEEEEEEE--TT--EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred EEEEECCCCCEEEEEcCCcccEEEEEEe--CC--EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE
Confidence 9999999999999999999999888774 44 799999999999999999999998886 78899999996 479
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEE-----ecCCccEEEEEEeeCCCeEEEEEcCCe----EEEe
Q 002881 244 IITGSEDGTVRIWHATTYRLENTL-----NYGLERVWAIGYMKSSRRIVIGYDEGT----IMVK 298 (871)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~g~~dg~----i~i~ 298 (871)
+++|+.||.|++||+.+++.+..+ ..+.+.|++++|+|++..+++|+.||. +.+|
T Consensus 375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~ 438 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 438 (445)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEE
Confidence 999999999999999999988887 356688999999999999999999997 6665
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=295.53 Aligned_cols=254 Identities=16% Similarity=0.247 Sum_probs=222.8
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCC--CCceeEEeeecCCCEEEEEEeCC--CCEEEEEeCCCeEE
Q 002881 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQ--SQTMAKSFEVTELPVRSAKFVAR--KQWVVAGADDMFIR 82 (871)
Q Consensus 7 ~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 82 (871)
+...+.+|.+.|++++|+|++++|++|+.||.|+|||+. ++.....+..|..+|++++|+|+ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456788999999999999999999999999999999998 55677788899999999999987 99999999999999
Q ss_pred EEECCCCc--EEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecC----
Q 002881 83 VYNYNTMD--KVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPK---- 153 (871)
Q Consensus 83 iw~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~---- 153 (871)
+||+.+++ ....+..|...|.+++|+|+ +.+|++++.||.|++||+++.. .....+..|...|.+++|+|.
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999987 67778889999999999999 9999999999999999998762 334466789999999999995
Q ss_pred --------CCCEEEEEECCCcEEEEECCCCCCe----EEEecCCCCeeEEEEeec---CCcCEEEEEeCCCeEEEEECCC
Q 002881 154 --------DTNTFASASLDRTIKIWNLGSPDPN----FTLDAHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 154 --------~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~i~~~~~---~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
++..+++++.||.|++||++++... ..+..|...|.+++|+|+ +. ++++++.||.|++||+.+
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~--~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS--YLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE--EEEEEETTSCEEEEEESS
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC--eEEEEeCCCEEEEEeCCC
Confidence 5889999999999999999876543 466789999999999998 55 899999999999999987
Q ss_pred Cc---eEEE--ecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 002881 219 KS---CVQT--LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 219 ~~---~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~ 262 (871)
+. .... ...|...|++++|+|++++|++++.||.|++|++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 64 2222 23478899999999999999999999999999987543
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-31 Score=277.58 Aligned_cols=286 Identities=18% Similarity=0.214 Sum_probs=244.3
Q ss_pred CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002881 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (871)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iw 126 (871)
.+....+.+|..+|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3677889999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCc--eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEee-cCCcCEEE
Q 002881 127 DWEKGW--MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLI 203 (871)
Q Consensus 127 d~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~ 203 (871)
++.... .....+.+|...|.++.|+ ++.+++++.||.|++|| .++....+..|..++.++.|+| +++ +++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~ 159 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSEN--KFL 159 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTT--EEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCC--EEE
Confidence 987542 4456678899999999995 57999999999999999 5667778889999999999999 554 899
Q ss_pred EEeCCCeEEEEECCCCceEEEecC-cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC
Q 002881 204 TGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 204 ~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~ 282 (871)
+++.||.|++|| .++....+.. |...+.+++|+|++. +++++.||.|++||+.+++.+..+..+...|.+++|+|+
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 999999999999 4566777776 889999999999987 999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEEC
Q 002881 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (871)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 362 (871)
+ .+++++.||.+.+|...... .. .. +..+...+..+.|+
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~~~---------~~-------~~------------------------~~~~~~~i~~~~~~ 275 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKENGS---------LK-------QV------------------------ITLPAISIWSVDCM 275 (313)
T ss_dssp S-CEEEEETTSEEEEECTTTCC---------EE-------EE------------------------EECSSSCEEEEEEC
T ss_pred C-CEEEEecCCEEEEEECCCCc---------ee-------EE------------------------EeccCceEEEEEEc
Confidence 9 69999999999998433221 11 00 01112245678899
Q ss_pred CCCCEEEEEcCCcEEEEEeecc
Q 002881 363 PNGRFVVVCGDGEYIIYTALAW 384 (871)
Q Consensus 363 ~~g~~lav~~~~~~~i~~~~~~ 384 (871)
|+|++++.+.+|.+.+|+....
T Consensus 276 ~~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 276 SNGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TTSCEEEEETTSCEEEEESCGG
T ss_pred cCCCEEEEeCCCcEEEEeCCCC
Confidence 9988777777888888886654
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-33 Score=303.30 Aligned_cols=244 Identities=16% Similarity=0.206 Sum_probs=209.8
Q ss_pred EeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 002881 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (871)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~ 129 (871)
.+..+..+|++++|+|++++|++|+.|+.|++|++.++ +....+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557789999999999999999999999999999988 6778888999999999999999999999999999999999
Q ss_pred CCc--eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC---CeEEEec-CCCCeeEEEEeecCCcCEEE
Q 002881 130 KGW--MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDA-HQKGVNCVDYFTGGDKPYLI 203 (871)
Q Consensus 130 ~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~i~~i~~~~~~~~~~l~ 203 (871)
++. .....+..|...|.+++|+| +++.|++++.|+.|++||+++++ ....+.. |...|.+++|+|++. +++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~ 162 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV--LLA 162 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS--EEE
T ss_pred CCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC--EEE
Confidence 873 24566778999999999999 88999999999999999998876 3677777 999999999999876 899
Q ss_pred EEeCCCeEEEEECC------------------CCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE--
Q 002881 204 TGSDDHTAKVWDYQ------------------TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL-- 263 (871)
Q Consensus 204 ~~~~dg~i~v~d~~------------------~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~-- 263 (871)
+++.||.|++||+. .++++..+ +|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 99999999999985 34566666 8999999999999999999999999999999998876
Q ss_pred --EEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 264 --ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 264 --~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
+..+..+...|.+++|+|++++|++|++++.+.+|.
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 777888889999999999999999998888886653
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-31 Score=288.76 Aligned_cols=243 Identities=15% Similarity=0.176 Sum_probs=218.6
Q ss_pred eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002881 53 FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (871)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~ 130 (871)
+..|..+|++++|+|++++|++|+.|+.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45588999999999999999999999999999999987 8888999999999999999999999999999999999988
Q ss_pred CceE-EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC---eEEE-ecCCCCeeEEEEeecCCcCEEEEE
Q 002881 131 GWMC-TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTL-DAHQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 131 ~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
+... ...+..|...|.+++|+| +++++++++.||.|++||++.... ...+ ..|...|.+++|+|++. +++++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~ 160 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV--LLAAG 160 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS--EEEEE
T ss_pred CeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC--EEEEE
Confidence 7322 233467889999999999 789999999999999999988774 2233 56788999999999876 89999
Q ss_pred eCCCeEEEEEC------------------CCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 002881 206 SDDHTAKVWDY------------------QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 206 ~~dg~i~v~d~------------------~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 267 (871)
+.||.|++||+ .+++++..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 99999999995 467888889899999999999999999999999999999999999999999
Q ss_pred ecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 268 NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 268 ~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
..+...+.+++|+|++.++++| .||.+.+|.
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFT 271 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence 9998899999999999988887 899999874
No 88
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-31 Score=292.38 Aligned_cols=245 Identities=13% Similarity=0.156 Sum_probs=219.3
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------EEEEEccCCCCeEEEEEcCC----C---CEEEE
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD------KVKVFEAHTDYIRCVAVHPT----L---PYVLS 116 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~i~~i~~~~~----~---~~l~~ 116 (871)
...+.+|..+|++++|+| ++|++|+.||.|++|++.+++ ....+..|...|.+++|+|+ + .+|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 455678999999999999 799999999999999999887 78888899999999999999 9 99999
Q ss_pred EECCCeEEEEECCCCce----EEEEeecC-----CcceEEEEEe----cCCCCE-EEEEECCCcEEEEECCC------CC
Q 002881 117 SSDDMLIKLWDWEKGWM----CTQIFEGH-----SHYVMQVTFN----PKDTNT-FASASLDRTIKIWNLGS------PD 176 (871)
Q Consensus 117 ~~~dg~i~iwd~~~~~~----~~~~~~~~-----~~~v~~~~~~----p~~~~~-l~~~~~dg~i~i~d~~~------~~ 176 (871)
++.||.|++||+.++.. ....+..| ...|.+++|+ | +++. |++++.||.|++||++. ++
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 99999999999987732 15666777 5899999999 8 7888 99999999999999988 66
Q ss_pred CeE-----EE-------ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC---c---ccCeEEEEEc
Q 002881 177 PNF-----TL-------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---H---THNVSAVCFH 238 (871)
Q Consensus 177 ~~~-----~~-------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~---~~~v~~i~~~ 238 (871)
... .+ ..|...+.+++|+|++ ++++++.||.|++||+++++++..+.. | ...|.+++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 665 66 4478899999999977 699999999999999999999999998 8 9999999999
Q ss_pred CCCCEEEEEECC---CcEEEEeCCCCeEEEEEec-------------CCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 239 PELPIIITGSED---GTVRIWHATTYRLENTLNY-------------GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 239 p~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
|++.+|++++.| |.|++||+.+++.+..+.. +...|.+++|+|++++|++++.||.+++|..
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999999999 9999999999999999988 8899999999999999999999999999854
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.2e-32 Score=291.61 Aligned_cols=277 Identities=9% Similarity=0.081 Sum_probs=220.8
Q ss_pred CCCEEEEEEcCCCCEEEEEEcC-------CeEEEEeCCCCce----------eEEeeecCCCEEEEEEeCCCCEEEEEe-
Q 002881 15 SERVKSVDLHPSEPWILASLYS-------GTVCIWNYQSQTM----------AKSFEVTELPVRSAKFVARKQWVVAGA- 76 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~d-------g~v~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~- 76 (871)
.-||.+++|+||+++|++|+.+ +.|++|++..+.. ...+..|...|.+++++ ++.+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999998753 3599999876531 12345677788887664 55677664
Q ss_pred ----------CCCeEEEEECCCCcE-EE---EE-----ccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceEE
Q 002881 77 ----------DDMFIRVYNYNTMDK-VK---VF-----EAHTDYIRCVAVHPTLPYVLSSS--DDMLIKLWDWEKGWMCT 135 (871)
Q Consensus 77 ----------~dg~i~iw~~~~~~~-~~---~~-----~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~ 135 (871)
.|+.+++|++.+... +. .. ..+...+.+++|+|||+++++++ .|+.|+|||++++ ...
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-TEK 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-EEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-cEE
Confidence 467899999865432 11 11 13456789999999999987655 6899999999998 444
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE--EecCCCCeeEEEEeecCCcCEEEEEeCCC----
Q 002881 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT--LDAHQKGVNCVDYFTGGDKPYLITGSDDH---- 209 (871)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~~l~~~~~dg---- 209 (871)
..+. |...|.+++|+| +++++++++. +.+.+|+..++..... ...|...|.+++|+|++. ++++++.++
T Consensus 171 ~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~--~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 171 FEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT--VLIAASLKKGKGI 245 (365)
T ss_dssp EEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE--EEEEEEESSSCCE
T ss_pred EEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC--EEEEEecCCccee
Confidence 4444 778899999999 8899999885 4566777766665543 345778899999999987 788888776
Q ss_pred eEEEEECCCCce----EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-ecCCccEEEEEEeeCCC
Q 002881 210 TAKVWDYQTKSC----VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-NYGLERVWAIGYMKSSR 284 (871)
Q Consensus 210 ~i~v~d~~~~~~----~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~ 284 (871)
.++.|++..... ...+.+|...|++++|+|+|++|++|+.|++|+|||+.+++.+..+ ..|...|++++|+|||+
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST 325 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC
T ss_pred EEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC
Confidence 688899876543 3566788999999999999999999999999999999999998875 67899999999999999
Q ss_pred eEEEEEcCCeEEEec
Q 002881 285 RIVIGYDEGTIMVKI 299 (871)
Q Consensus 285 ~l~~g~~dg~i~i~~ 299 (871)
+|++|+.|++|++|.
T Consensus 326 ~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 326 YVASVSAANTIHIIK 340 (365)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEeCCCeEEEEE
Confidence 999999999999984
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.3e-32 Score=299.92 Aligned_cols=246 Identities=17% Similarity=0.210 Sum_probs=201.3
Q ss_pred ceeEEeeecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEE--EEccCCCCeEEEEEcC-CCCEEEEEECCCeE
Q 002881 48 TMAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDKVK--VFEAHTDYIRCVAVHP-TLPYVLSSSDDMLI 123 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i 123 (871)
........|...|+|++|+| ++++||+|+.||.|+|||+.+++... .+.+|.+.|++++|+| ++.+|++|+.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 34455677889999999999 56789999999999999998776544 4468999999999998 68899999999999
Q ss_pred EEEECCCCceEEEEeec--CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCE
Q 002881 124 KLWDWEKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (871)
Q Consensus 124 ~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 201 (871)
++||++++ ........ +...+.+++|+| ++++|++|+.||.|++||+++ +.+..+.+|...|.+++|+|++.. +
T Consensus 190 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~-~ 265 (435)
T 4e54_B 190 RLQDFKGN-ILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDW-F 265 (435)
T ss_dssp EEEETTSC-EEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSS-E
T ss_pred EEeeccCC-ceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCce-E
Confidence 99999876 43333333 344578999999 889999999999999999964 556677889999999999998765 7
Q ss_pred EEEEeCCCeEEEEECCCCceEE---EecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCc------
Q 002881 202 LITGSDDHTAKVWDYQTKSCVQ---TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE------ 272 (871)
Q Consensus 202 l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------ 272 (871)
+++|+.|+.|++||+++.+... ...+|...|++++|+|++.+|++++.||.|++||+.++.....+..+..
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc
Confidence 8899999999999998765433 3356889999999999999999999999999999999887776655432
Q ss_pred cEEEEEEeeCCCeEEEEE-cCCeEEE
Q 002881 273 RVWAIGYMKSSRRIVIGY-DEGTIMV 297 (871)
Q Consensus 273 ~i~~i~~~~~~~~l~~g~-~dg~i~i 297 (871)
.+....|+|++..+++++ .++.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~ 371 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKS 371 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence 244568889988888764 3444443
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.9e-32 Score=292.00 Aligned_cols=288 Identities=16% Similarity=0.304 Sum_probs=236.2
Q ss_pred eeecCCCEEEEEEeCC----CCEEEEEeCCCeEEEEECCCCcEEEEEcc-----CCCCeEEEEEcCC----CCEEEEEEC
Q 002881 53 FEVTELPVRSAKFVAR----KQWVVAGADDMFIRVYNYNTMDKVKVFEA-----HTDYIRCVAVHPT----LPYVLSSSD 119 (871)
Q Consensus 53 ~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~i~~~~~----~~~l~~~~~ 119 (871)
..+|..+|++++|+|+ ...+++++.++.|++|++.+++.+..+.. |...|++++|+|+ +++|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4479999999999984 56677777778999999998877766653 5678999999999 679999999
Q ss_pred CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE---ecCCCCeeEEEEeec
Q 002881 120 DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAHQKGVNCVDYFTG 196 (871)
Q Consensus 120 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~ 196 (871)
||.|++||+.++ .....+.+|...|.+++|+|.++++|++++.||.|++||+++++....+ ..|...|.+++|+|+
T Consensus 94 dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 94 RGIIRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TCEEEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCEEEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 999999999987 6667788899999999999977899999999999999999998888887 679999999999998
Q ss_pred CCcCEEEEEeCCCeEEEEECCCCceEEEec----------------------------CcccCeEEEEEcCCCCEEEEEE
Q 002881 197 GDKPYLITGSDDHTAKVWDYQTKSCVQTLE----------------------------GHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 197 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----------------------------~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
+. ++++++.||.|++||+++++....+. .|...|.+++|+ ++++++++
T Consensus 173 ~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 173 GE--KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp SS--EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CC--EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 77 89999999999999998765543333 388999999999 67999999
Q ss_pred CCCcEEEEeCCCCe--------------EEEEEecCCccEEEEEEeeC--CCeEEEEEcCCeEEEecCCCcceEEEeCCC
Q 002881 249 EDGTVRIWHATTYR--------------LENTLNYGLERVWAIGYMKS--SRRIVIGYDEGTIMVKIGREEPVASMDNSG 312 (871)
Q Consensus 249 ~dg~v~iwd~~~~~--------------~~~~~~~~~~~i~~i~~~~~--~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 312 (871)
.||.|++||+.++. .+..+..+...|++++|+|+ +++|++|+.||.|.+|.....
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~--------- 319 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE--------- 319 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS---------
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC---------
Confidence 99999999988763 37778888889999999999 999999999999999843221
Q ss_pred cEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCcc--ccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002881 313 KIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC--DLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (871)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~lav~~-~~~~~i~~~ 381 (871)
+........+..+ ...+..++|+|+|++|++++ +|.+.+|+.
T Consensus 320 ---------------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 320 ---------------------------DPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ---------------------------SGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ---------------------------CCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 1000000011111 34567888888888887776 677888864
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-32 Score=300.55 Aligned_cols=268 Identities=12% Similarity=0.216 Sum_probs=223.5
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCceeEEe-eecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC---Cc---EEE
Q 002881 22 DLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-EVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT---MD---KVK 93 (871)
Q Consensus 22 ~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~---~~---~~~ 93 (871)
.|+|++..+++++ .|+ .+++.+..+ .+|..+|++++|+| ++++|++|+.||.|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677777776654 488 567888888 88999999999999 999999999999999999876 33 233
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---CCceEEEEeec------------CCcceEEEE--EecCCCC
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE---KGWMCTQIFEG------------HSHYVMQVT--FNPKDTN 156 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~------------~~~~v~~~~--~~p~~~~ 156 (871)
.+ .|...|++++|+|++++|++|+.||.|++||++ ++ ........ +...+.++. ++| +++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~ 183 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE-SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKS 183 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCE
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC-ceeeccccceeEEEEccCcccccCceEEEEEEcC-CCC
Confidence 33 489999999999999999999999999999995 33 22222221 445566666 446 788
Q ss_pred EEEEEECCCcEEEEECCCCCCeEEEec--CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-CcccCeE
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVS 233 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~ 233 (871)
.+++++.||.|++||+++++....+.. |...|.+++|+|++. ++++|+.||.|++||+++++++..+. .|..+|.
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC--VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC--EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC--EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence 999999999999999999999999887 789999999999877 89999999999999999999988886 6788999
Q ss_pred EEEEcC----CCCEEEEEECCCcEEEEeCCCCeEEEEEecC--------------------------CccEEEEEEeeCC
Q 002881 234 AVCFHP----ELPIIITGSEDGTVRIWHATTYRLENTLNYG--------------------------LERVWAIGYMKSS 283 (871)
Q Consensus 234 ~i~~~p----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------------------------~~~i~~i~~~~~~ 283 (871)
+++|+| ++.+|++|+.||.|++||+.+++....+..+ ...|++++|+ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 997665 5779999999999999999999988777643 3458889999 77
Q ss_pred CeEEEEEcCCeEEEecCCC
Q 002881 284 RRIVIGYDEGTIMVKIGRE 302 (871)
Q Consensus 284 ~~l~~g~~dg~i~i~~~~~ 302 (871)
++|++|+.||.|++|....
T Consensus 341 ~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EEEEEEGGGTEEEEEETTC
T ss_pred eEEEecCCCCeEEEEECCC
Confidence 8999999999999995443
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.1e-32 Score=288.12 Aligned_cols=248 Identities=19% Similarity=0.248 Sum_probs=207.5
Q ss_pred EeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEEEEE
Q 002881 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~iwd 127 (871)
.+.+|..+|++++|+|+|++|++|+.|++|++||+.++. .+..+.+|.+.|.+++|+| ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456799999999999999999999999999999998775 4677889999999999986 488999999999999999
Q ss_pred CCCCc-eEEEEeecCCcceEEEEEecCC-CCEEEEEECCCcEEEEECCCCCC---eEEEecCCCCeeEEEEeecCC----
Q 002881 128 WEKGW-MCTQIFEGHSHYVMQVTFNPKD-TNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGD---- 198 (871)
Q Consensus 128 ~~~~~-~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~---- 198 (871)
++++. .....+.+|...|.+++|+|++ +.+|++|+.||+|++||++.... ...+..|...+.++.|+|+..
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98763 3455678899999999999942 68999999999999999987532 233457888999999998731
Q ss_pred -----------cCEEEEEeCCCeEEEEECCCC---ceEEEecCcccCeEEEEEcCCC----CEEEEEECCCcEEEEeCCC
Q 002881 199 -----------KPYLITGSDDHTAKVWDYQTK---SCVQTLEGHTHNVSAVCFHPEL----PIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 199 -----------~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~v~~i~~~p~~----~~l~~~~~dg~v~iwd~~~ 260 (871)
..++++|+.|+.|++||++++ .++..+.+|...|.+++|+|++ .+|++++.||+|++|++.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 137999999999999999755 4677888999999999999986 7999999999999999876
Q ss_pred C---e-EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 261 Y---R-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 261 ~---~-~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
. . ....+..+...|++++|+|+++.|++|+.||.+++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 1233455678999999999999999999999999983
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4e-31 Score=284.41 Aligned_cols=245 Identities=16% Similarity=0.227 Sum_probs=208.2
Q ss_pred EEeeecCCCEEEEEEeCCCCEEE-EEeC---CCeEEEEECCCCcEEEEE-ccCCCCeEEEEEcCC---CCEEEEEECCCe
Q 002881 51 KSFEVTELPVRSAKFVARKQWVV-AGAD---DMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPT---LPYVLSSSDDML 122 (871)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~---dg~i~iw~~~~~~~~~~~-~~~~~~i~~i~~~~~---~~~l~~~~~dg~ 122 (871)
..+.+|..+|.+++|+|++..++ +|+. ||.|++|++.+++..... ..|...|.+++|+|+ +.+|++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45567999999999999997655 5555 899999999998876544 378999999999998 699999999999
Q ss_pred EEEEECCCCceEEEEeecCCcceEEEEE------ecCCCCEEEEEECCCcEEEEECCCCC-CeEEEecCCC----CeeEE
Q 002881 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTF------NPKDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQK----GVNCV 191 (871)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~v~~~~~------~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~----~i~~i 191 (871)
|++||+.++......+.+|...|.++.| +| +++.|++++.||.|++||++++. +...+..+.. .+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999885467788899999999966 56 78899999999999999999887 6777766554 78888
Q ss_pred E----EeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcC---CCCEEEEEECCCcEEEEeCCCCeEE
Q 002881 192 D----YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP---ELPIIITGSEDGTVRIWHATTYRLE 264 (871)
Q Consensus 192 ~----~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p---~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (871)
. |+|++. ++++++.||.|++||+++++.... ..|...|.+++|+| ++.++++++.||.|++||+.+++..
T Consensus 171 ~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 171 AFGNAYNQEER--VVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEECCCC-CCC--EEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEeccCCCCC--EEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 8 566666 899999999999999998887544 55888999999999 8999999999999999998876644
Q ss_pred EEE-----ecCCccEEEEEEeeCCC-eEEEEEcCCeEEEec
Q 002881 265 NTL-----NYGLERVWAIGYMKSSR-RIVIGYDEGTIMVKI 299 (871)
Q Consensus 265 ~~~-----~~~~~~i~~i~~~~~~~-~l~~g~~dg~i~i~~ 299 (871)
..+ ..+...|++++|+|+++ ++++|+.||.+.+|.
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 333 37888999999999998 899999999999983
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-30 Score=285.80 Aligned_cols=247 Identities=18% Similarity=0.299 Sum_probs=219.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN-TMDKV 92 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~ 92 (871)
|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++| +++.|++|+.||.|++||+. .....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCccee
Confidence 7899999999999999999999999999999999999999999999999999 45799999999999999998 56678
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE--CCCcEEEE
Q 002881 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS--LDRTIKIW 170 (871)
Q Consensus 93 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~ 170 (871)
..+..|...|.+++|+|++++|++|+.||.|++||++++ .....+..|...|.+++|+|.+..++++++ .|+.|++|
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 888999999999999999999999999999999999987 566677889999999999997677888876 79999999
Q ss_pred ECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEE--EeCCCeEEEEECCCCceE--EEecCcccCeEEEEEcCCCCEEEE
Q 002881 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT--GSDDHTAKVWDYQTKSCV--QTLEGHTHNVSAVCFHPELPIIIT 246 (871)
Q Consensus 171 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~--~~~dg~i~v~d~~~~~~~--~~~~~~~~~v~~i~~~p~~~~l~~ 246 (871)
|+.+++....+. +...+.+++|+|++. ++++ |+.||.|++||+.++... ..+.+|...|.+++|+|++++|++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~--~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSK--EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSS--EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCC--eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence 999998887775 567899999999987 6777 448999999999986554 446789999999999999999999
Q ss_pred EECCCcEEEEeCCCCeEEEE
Q 002881 247 GSEDGTVRIWHATTYRLENT 266 (871)
Q Consensus 247 ~~~dg~v~iwd~~~~~~~~~ 266 (871)
++.||.|++|++.+++.+..
T Consensus 367 ~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 367 AASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp ECTTSEEEEEECCC------
T ss_pred EeCCCcEEEEECCCCccccc
Confidence 99999999999998876554
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.9e-31 Score=294.17 Aligned_cols=247 Identities=15% Similarity=0.209 Sum_probs=206.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEEccCC------------CCeEEEEEcCCC-
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----------KVKVFEAHT------------DYIRCVAVHPTL- 111 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~i~~i~~~~~~- 111 (871)
+.++|++++|+|+|++|++|+.||.|++|++.+++ ....+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 56899999999999999999999999999999877 477888998 889999999998
Q ss_pred -CEEEEEECCCeEEEEECCCCceE---------------------------------------EEEeecCCcceEEEEEe
Q 002881 112 -PYVLSSSDDMLIKLWDWEKGWMC---------------------------------------TQIFEGHSHYVMQVTFN 151 (871)
Q Consensus 112 -~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~~ 151 (871)
.+|++++.||.|++||+.++... .....+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764211 12236799999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCC-CeEE-------EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce--
Q 002881 152 PKDTNTFASASLDRTIKIWNLGSPD-PNFT-------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-- 221 (871)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-------~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-- 221 (871)
| +++.|++| .||.|++||++... .... +..|...|.+++|+|++.. ++++|+.||.|++||+++++.
T Consensus 187 ~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 187 S-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp T-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETTSCEEEEETTTCSSSC
T ss_pred C-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCCCeEEEEECcCCcccc
Confidence 9 78999998 79999999998433 3321 3478899999999998722 899999999999999998886
Q ss_pred --EEEecCccc------------CeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEEecCCcc-------------
Q 002881 222 --VQTLEGHTH------------NVSAVCFHPELPIIITGSEDGTVRIWHATT-YRLENTLNYGLER------------- 273 (871)
Q Consensus 222 --~~~~~~~~~------------~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~------------- 273 (871)
+..+..|.. .|.+++|+|++.+|++++. |.|++||+.+ ++.+..+..+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 788888776 8999999999999999998 9999999987 7777777766321
Q ss_pred --EEEEEEeeCCCeEEEEEcCCeEEEecCCCcceE
Q 002881 274 --VWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA 306 (871)
Q Consensus 274 --i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~ 306 (871)
+..++|+|++++|++|+.||.+++|........
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 334999999999999999999999966554433
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-30 Score=285.91 Aligned_cols=252 Identities=22% Similarity=0.345 Sum_probs=220.4
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM- 89 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~- 89 (871)
+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+.++.|+ +..|++|+.|+.+++|+....
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence 45788899999999999999999999999999999999999999999999988875 678999999999999998764
Q ss_pred cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eEEEEeecCCcceEEEEEecCCCCEEEEE--ECC
Q 002881 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW---MCTQIFEGHSHYVMQVTFNPKDTNTFASA--SLD 164 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~d 164 (871)
..+..+.+|...+..+.|+|++.++++++.||.+++|+..++. ........|...|.+++|+|.+.+.++++ +.|
T Consensus 221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 4567788999999999999999999999999999999998653 23456678899999999999778888775 479
Q ss_pred CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe--CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCC
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~ 242 (871)
++|++||+.+++....+.. ...+.++.|++++.. +++++ .|+.|++||+.+++++.++.+|.+.|++++|+|+|.
T Consensus 301 ~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~--lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~ 377 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKE--LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 377 (420)
T ss_dssp CEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTE--EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CEEEEEeCCccccceeecc-ccceeeeeecCCCCe--EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 9999999999988777764 457889999998874 55543 789999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEE
Q 002881 243 IIITGSEDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~ 267 (871)
+|++|+.||+|++||+.........
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSCC---
T ss_pred EEEEEecCCeEEEEECCCCCccchh
Confidence 9999999999999998766544433
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-32 Score=319.70 Aligned_cols=253 Identities=16% Similarity=0.250 Sum_probs=219.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCC--CCceeEEeeecCCCEEEEEEeCC--CCEEEEEeCCCeEEE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQ--SQTMAKSFEVTELPVRSAKFVAR--KQWVVAGADDMFIRV 83 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 83 (871)
...+.+|.+.|++++|+|++++|++|+.||.|+|||+. ++.....+.+|..+|++++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45678999999999999999999999999999999988 45677788899999999999998 999999999999999
Q ss_pred EECCCCc--EEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecC-----
Q 002881 84 YNYNTMD--KVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPK----- 153 (871)
Q Consensus 84 w~~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~----- 153 (871)
||+.+++ ....+..|...|++++|+|+ +..+++|+.||.|++||++++. .....+.+|...|.+++|+|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999887 67778899999999999999 9999999999999999998762 334556789999999999994
Q ss_pred -------CCCEEEEEECCCcEEEEECCCCC----CeEEEecCCCCeeEEEEeec---CCcCEEEEEeCCCeEEEEECCCC
Q 002881 154 -------DTNTFASASLDRTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 154 -------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~---~~~~~l~~~~~dg~i~v~d~~~~ 219 (871)
++..+++|+.||.|++||++++. ....+.+|..+|.+++|+|+ +. ++++++.||.|++||+.++
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~--~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS--YLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE--EEEEEESSSCEEEEEESSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC--EEEEEecCCEEEEecCCCC
Confidence 47899999999999999998774 34566789999999999998 55 8999999999999999876
Q ss_pred c-----eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 002881 220 S-----CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 220 ~-----~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~ 262 (871)
. .......|...|++++|+|+++++++|+.||.|++|++.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 4 333345588899999999999999999999999999988543
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-30 Score=287.44 Aligned_cols=269 Identities=13% Similarity=0.134 Sum_probs=228.4
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc---eeEEeeec------------------------------------
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT---MAKSFEVT------------------------------------ 56 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~---~~~~~~~~------------------------------------ 56 (871)
.++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966655 58899999999998 55555432
Q ss_pred ------------------CCCEEEEEEeCCCCEE-EEEeCCCeEEEEECC--CCcEEEEEc--cCCCCeEEEEEcCCCCE
Q 002881 57 ------------------ELPVRSAKFVARKQWV-VAGADDMFIRVYNYN--TMDKVKVFE--AHTDYIRCVAVHPTLPY 113 (871)
Q Consensus 57 ------------------~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~i~~i~~~~~~~~ 113 (871)
...|++++|+|++++| ++|+.||.|++|++. +++.+..+. .|...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 2369999999999996 889999999999999 888888876 57789999999999999
Q ss_pred EEEEECCCeEEEEECCCCce---EEEEeecCCcceEEEEEecCC---CCEEEEEECCCcEEEEECCCCCCeEE-EecCCC
Q 002881 114 VLSSSDDMLIKLWDWEKGWM---CTQIFEGHSHYVMQVTFNPKD---TNTFASASLDRTIKIWNLGSPDPNFT-LDAHQK 186 (871)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~ 186 (871)
|++|+.+|.|.+|++.++.. ....+.+|...|.+++|+| + +.+|++++.|+.|++||+++++.... +.+|..
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999987632 2236678999999999999 6 88999999999999999999888777 458999
Q ss_pred CeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC-------------------------cccCeEEEEEcCCC
Q 002881 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------------------------HTHNVSAVCFHPEL 241 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------------------------~~~~v~~i~~~p~~ 241 (871)
.|.+++|+ ++. +|++++.|+.|++||+.+++++..+.. ....|.+++|+|++
T Consensus 243 ~v~~~~~s-d~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 243 FVSSICCG-KDY--LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp CEEEEEEC-STT--EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred ceEEEEEC-CCC--EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 99999999 766 899999999999999999998887753 23568999999999
Q ss_pred CEEEEEE-CCCcEEEEeC--CCC---eEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 242 PIIITGS-EDGTVRIWHA--TTY---RLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 242 ~~l~~~~-~dg~v~iwd~--~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
+++++++ .|+.|++|++ .++ +.+..+..+ +.+++++|+|++.++++++
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 9999999 8999999999 555 667777777 8899999999643333333
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=282.96 Aligned_cols=250 Identities=20% Similarity=0.291 Sum_probs=217.2
Q ss_pred CceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC--CCcEEEEEccCCCCeEEEEEcCC--CCEEEEEECCCe
Q 002881 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN--TMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDML 122 (871)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~ 122 (871)
|+++..+.+|..+|++++|+|++++|++|+.||.|++|++. +++.+..+.+|...|++++|+|+ +.+|++|+.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 34566788999999999999999999999999999999998 55677888999999999999987 899999999999
Q ss_pred EEEEECCCCc-eEEEEeecCCcceEEEEEecCC--CCEEEEEECCCcEEEEECCCCC--CeEEEecCCCCeeEEEEeec-
Q 002881 123 IKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKD--TNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTG- 196 (871)
Q Consensus 123 i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~- 196 (871)
|++||++++. .....+..|...|.+++|+| + ++.+++++.||.|++||++... ....+..|...|.+++|+|.
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 9999999873 25666778999999999999 6 8899999999999999998873 44566789999999999994
Q ss_pred ------------CCcCEEEEEeCCCeEEEEECCCCc----eEEEecCcccCeEEEEEcCC---CCEEEEEECCCcEEEEe
Q 002881 197 ------------GDKPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPE---LPIIITGSEDGTVRIWH 257 (871)
Q Consensus 197 ------------~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~i~~~p~---~~~l~~~~~dg~v~iwd 257 (871)
+. ++++++.||.|++||++++. ....+.+|...|.+++|+|+ +.+|++++.||.|++||
T Consensus 160 ~~~~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 160 IEEDGEHNGTKESR--KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp ----------CTTC--EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccCCCCCC--EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 44 89999999999999998764 45677889999999999999 89999999999999999
Q ss_pred CCCCe---EEEEEe--cCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 258 ATTYR---LENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 258 ~~~~~---~~~~~~--~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
+.++. ....+. .+...+++++|+|++++|++++.||.+++|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 98864 222222 3667899999999999999999999999983
No 101
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.3e-31 Score=288.07 Aligned_cols=307 Identities=17% Similarity=0.205 Sum_probs=244.3
Q ss_pred CCeEEEEeCCCCceeEEeeecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc-------------cCCCC
Q 002881 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDKVKVFE-------------AHTDY 101 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~ 101 (871)
++.+++|+++.++....+.+|.++|++++|+| ++++|++|+.||.|++|++.+++....+. +|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45678888888888888999999999999999 99999999999999999999876544432 59999
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecC--CCCEEEEEECCCcEEEEECCCCCCe
Q 002881 102 IRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK--DTNTFASASLDRTIKIWNLGSPDPN 178 (871)
Q Consensus 102 i~~i~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (871)
|.+++|+| ++.+|++++.||.|++||++++ .....+. +...+.++.|+|. ++.++++++.||.|++||+++++..
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 99999999 7789999999999999999988 4444444 6778999999984 2349999999999999999999999
Q ss_pred EEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc-eEEEe---------------cCcccCeEEEEEcCCCC
Q 002881 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-CVQTL---------------EGHTHNVSAVCFHPELP 242 (871)
Q Consensus 179 ~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~---------------~~~~~~v~~i~~~p~~~ 242 (871)
..+..|...|.+++|+|++.. ++++++.||.|++||++++. ++..+ ..|...|.+++|+|+++
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~~-ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYDY-ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EEECCCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eeecCCCCcEEEEEECCCCCc-EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 999999999999999998864 68899999999999998765 34444 56888999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEEecC-----CccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEE
Q 002881 243 IIITGSEDGTVRIWHATTYRLENTLNYG-----LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWA 317 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 317 (871)
+|++++.||.|++||+.+++.......+ ...+........+..+++++.+|.+.+|..... ..+
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~-- 327 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQI-- 327 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEE--
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---------cce--
Confidence 9999999999999999988754433221 111222222344567778888899988743211 111
Q ss_pred eecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc
Q 002881 318 KHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR 385 (871)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~-~~~~~i~~~~~~~ 385 (871)
..+..+...+..++|+|+|++|++++ ||.+.+|+.....
T Consensus 328 -----------------------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 328 -----------------------------TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp -----------------------------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred -----------------------------eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 11123344567899999999998887 8999999887654
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=2.4e-30 Score=285.36 Aligned_cols=282 Identities=21% Similarity=0.318 Sum_probs=240.7
Q ss_pred CEEEEEEcCCC----------CEEEEEEc----CCeEEEEeCC--------------------------CCce-eEEeee
Q 002881 17 RVKSVDLHPSE----------PWILASLY----SGTVCIWNYQ--------------------------SQTM-AKSFEV 55 (871)
Q Consensus 17 ~v~~i~~s~~~----------~~la~~~~----dg~v~iwd~~--------------------------~~~~-~~~~~~ 55 (871)
+..++.|.|+. .++++|+. .+.|.++++. +++. ......
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 56889999975 35777765 3457777532 1122 234456
Q ss_pred cCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCC----------CcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeE
Q 002881 56 TELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNT----------MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLI 123 (871)
Q Consensus 56 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i 123 (871)
|.+.|++++|+|+ +.+|++++.+|.|++|++.+ ......+.+|...|.+++|+|+++ +|++|+.||.|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 8999999999997 68999999999999999986 677888899999999999999988 99999999999
Q ss_pred EEEECCCCce------EEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC---CCeEEEecCCCCeeEEEEe
Q 002881 124 KLWDWEKGWM------CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP---DPNFTLDAHQKGVNCVDYF 194 (871)
Q Consensus 124 ~iwd~~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~ 194 (871)
++||+.++.. ....+.+|...|.+++|+|.++.+|++++.||.|++||++++ ++...+..|...|++++|+
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence 9999987311 134567899999999999977899999999999999999987 5777888999999999999
Q ss_pred ecCCcCEEEEEeCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCCC------------
Q 002881 195 TGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATT------------ 260 (871)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~------------ 260 (871)
|++.. ++++|+.||.|++||+++ +.++..+..|...|++++|+|+++ +|++++.||.|++||+..
T Consensus 287 p~~~~-~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 287 PYSEF-ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp SSCTT-EEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCCCC-EEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc
Confidence 98764 789999999999999997 567888889999999999999985 799999999999999886
Q ss_pred --CeEEEEEecCCccEEEEEEeeCCC-eEEEEEcCCeEEEec
Q 002881 261 --YRLENTLNYGLERVWAIGYMKSSR-RIVIGYDEGTIMVKI 299 (871)
Q Consensus 261 --~~~~~~~~~~~~~i~~i~~~~~~~-~l~~g~~dg~i~i~~ 299 (871)
.+.+..+..|...|.+++|+|+++ .+++++.||.+.+|.
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 356777778888999999999999 899999999999983
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=7e-31 Score=287.39 Aligned_cols=277 Identities=18% Similarity=0.241 Sum_probs=231.8
Q ss_pred CEEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCc----eeEEeeecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-
Q 002881 17 RVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTM- 89 (871)
Q Consensus 17 ~v~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~- 89 (871)
....++++|+...++ +++.+|.|+||++.... ....+.+|..+|++++|+| ++++|++|+.||.|++|++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344688888876544 46779999999986642 3445678999999999999 9999999999999999999987
Q ss_pred ------cEEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEe--ecCCcceEEEEEecCCCCEEEE
Q 002881 90 ------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 90 ------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
+.+..+.+|...|.+++|+|++ .+|++++.||.|++||++++ .....+ ..|...|.+++|+| +++.|++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 193 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-AAVLTLGPDVHPDTIYSVDWSR-DGALICT 193 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-EEEEEECTTTCCSCEEEEEECT-TSSCEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-CccEEEecCCCCCceEEEEECC-CCCEEEE
Confidence 6678889999999999999998 69999999999999999988 556666 78999999999999 8899999
Q ss_pred EECCCcEEEEECCCCCCeEEE-ecCCCC-eeEEEEeecCCcCEEEEE---eCCCeEEEEECCCCce-EEEec-CcccCeE
Q 002881 161 ASLDRTIKIWNLGSPDPNFTL-DAHQKG-VNCVDYFTGGDKPYLITG---SDDHTAKVWDYQTKSC-VQTLE-GHTHNVS 233 (871)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~~~l~~~---~~dg~i~v~d~~~~~~-~~~~~-~~~~~v~ 233 (871)
++.||.|++||+++++....+ ..|... +.++.|+|++. ++++| +.++.|++||++++.. +.... .+...+.
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK--ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE--EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc--EEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence 999999999999999888887 677765 89999999876 78888 6899999999988654 33322 4677899
Q ss_pred EEEEcCCCCEEEE-EECCCcEEEEeCCCCeE-EEEEec--CCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 234 AVCFHPELPIIIT-GSEDGTVRIWHATTYRL-ENTLNY--GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 234 ~i~~~p~~~~l~~-~~~dg~v~iwd~~~~~~-~~~~~~--~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
+++|+|++.++++ |+.||.|++||+.+++. +..+.. +...+.+++|+|++..+++ .++.+++|.
T Consensus 272 ~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 272 LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 9999999998875 45799999999998873 333333 4588999999999998764 556777763
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=4.5e-30 Score=275.02 Aligned_cols=246 Identities=16% Similarity=0.236 Sum_probs=217.4
Q ss_pred EEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEccCCCCeEEEEEcC--CCCEEEEEECCCeEE
Q 002881 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIK 124 (871)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~ 124 (871)
..+.+|..+|++++|+|++++|++|+.||.|++|++.++ +....+.+|...|++++|+| ++.+|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346789999999999999999999999999999999876 46677789999999999999 589999999999999
Q ss_pred EEECCCCc--------eEEEEeecCCcceEEEEEecCC--CCEEEEEECCCcEEEEECCCCCCeEEEe------------
Q 002881 125 LWDWEKGW--------MCTQIFEGHSHYVMQVTFNPKD--TNTFASASLDRTIKIWNLGSPDPNFTLD------------ 182 (871)
Q Consensus 125 iwd~~~~~--------~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------ 182 (871)
+||++++. .....+..|...|.+++|+| + ++++++++.||.|++||+++++....+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998753 44667778999999999999 6 8899999999999999998876543332
Q ss_pred -cCCCCeeEEEEeec---CCcCEEEEEeCCCeEEEEECCCCce--EEEecCcccCeEEEEEcCCC----CEEEEEECCCc
Q 002881 183 -AHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPEL----PIIITGSEDGT 252 (871)
Q Consensus 183 -~~~~~i~~i~~~~~---~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~i~~~p~~----~~l~~~~~dg~ 252 (871)
.+...+.++.|+|+ +. ++++++.++.+.+|+...+.. +..+.+|...|++++|+|++ .+|++|+.||.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPE--KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCC--EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred CCcccceeEEEeccCCCCCc--EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 56788999999997 44 899999999998888877765 77788899999999999998 79999999999
Q ss_pred EEEEeCCCC----------------------------------------------eEEEEEecCCccEEEEEEeeCCCeE
Q 002881 253 VRIWHATTY----------------------------------------------RLENTLNYGLERVWAIGYMKSSRRI 286 (871)
Q Consensus 253 v~iwd~~~~----------------------------------------------~~~~~~~~~~~~i~~i~~~~~~~~l 286 (871)
|++||+.++ +.+..+..|...|++++|+|++++|
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 321 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL 321 (351)
T ss_dssp EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence 999998764 5667777888999999999999999
Q ss_pred EEEEcCCeEEEec
Q 002881 287 VIGYDEGTIMVKI 299 (871)
Q Consensus 287 ~~g~~dg~i~i~~ 299 (871)
++|+.||.+++|.
T Consensus 322 ~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 322 SSAGDDGKVRLWK 334 (351)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEecCCCcEEEEe
Confidence 9999999999983
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.1e-30 Score=285.82 Aligned_cols=250 Identities=21% Similarity=0.344 Sum_probs=221.8
Q ss_pred hcccCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEeCCC----------CceeEEeeecCCCEEEEEEeCCCC-EEEEEeC
Q 002881 10 KLAQRSERVKSVDLHPS-EPWILASLYSGTVCIWNYQS----------QTMAKSFEVTELPVRSAKFVARKQ-WVVAGAD 77 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~-~~~la~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 77 (871)
...+|.+.|++++|+|+ +.+|++++.+|.|++|++.+ ......+..|...|.+++|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34579999999999997 67899999999999999986 577788899999999999999998 9999999
Q ss_pred CCeEEEEECCCCcE-------EEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc--eEEEEeecCCcceEE
Q 002881 78 DMFIRVYNYNTMDK-------VKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQ 147 (871)
Q Consensus 78 dg~i~iw~~~~~~~-------~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~ 147 (871)
||.|++|++.++.. ...+..|...|.+++|+| ++..|++++.||.|++||++++. .....+..|...|.+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 99999999987422 456778999999999999 67899999999999999999762 455566789999999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCC-CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC--------
Q 002881 148 VTFNPKDTNTFASASLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------- 218 (871)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-------- 218 (871)
++|+|.+..++++|+.||.|++||+++ ..++..+..|...|.+++|+|++.. ++++++.||.|++||+..
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET-ILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTT-EEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999996556899999999999999998 5678888899999999999998854 799999999999999986
Q ss_pred ------CceEEEecCcccCeEEEEEcCCCC-EEEEEECCCcEEEEeCCC
Q 002881 219 ------KSCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATT 260 (871)
Q Consensus 219 ------~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~~dg~v~iwd~~~ 260 (871)
.+.+..+.+|...|++++|+|+++ ++++++.||.|++|++..
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 367778888999999999999999 999999999999999764
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-31 Score=289.36 Aligned_cols=253 Identities=10% Similarity=0.118 Sum_probs=206.8
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
+.+.+|...|.+++|+|+| .++.+.+|+.+.. ....+ .|...|.+++|||+|++||+++.||.|++|+.++
T Consensus 46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~ 116 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK 116 (588)
T ss_dssp SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred ceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence 3457999999999999999 4666666664322 22222 3578899999999999999999999999999654
Q ss_pred CcEEEEEccCCC-----CeEEEEEcCCCCEEEEEECCCeEEEEECCCCce------EEEEe----ecCCcceEEEEEecC
Q 002881 89 MDKVKVFEAHTD-----YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM------CTQIF----EGHSHYVMQVTFNPK 153 (871)
Q Consensus 89 ~~~~~~~~~~~~-----~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~----~~~~~~v~~~~~~p~ 153 (871)
.+..+. |.. .+.+++|||+|++|++|+.||+|++||+.++.. ....+ .+|...|.+++|+|
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP- 192 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE- 192 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-
Confidence 666666 665 499999999999999999999999999998732 34554 67888999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCC---eEEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc
Q 002881 154 DTNTFASASLDRTIKIWNLGSPDP---NFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 229 (871)
++ +++++.|++|++||+.++.. ..++ .+|...|.+++|+ +. .+++++ ++.|++||+.+++......+|.
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~--~LASa~-~~tIkLWd~~~~~~~~~~~gh~ 265 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY--KVVLTC-PGYVHKIDLKNYSISSLKTGSL 265 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT--EEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC--EEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence 55 88999999999999988773 2456 4788899999998 43 688887 6999999999877744444799
Q ss_pred cCeEEEEE--cCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 230 HNVSAVCF--HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 230 ~~v~~i~~--~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
..|..+.| +|++..++++++||+ ++|... .++++|++..++.. |+.+.+|..
T Consensus 266 ~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~ 319 (588)
T 2j04_A 266 ENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWST 319 (588)
T ss_dssp SCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTT
T ss_pred ceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEEC
Confidence 99999999 999999999999999 999976 25689999887764 888888743
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=276.06 Aligned_cols=264 Identities=11% Similarity=0.095 Sum_probs=216.0
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC---------CCcE
Q 002881 21 VDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN---------TMDK 91 (871)
Q Consensus 21 i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~---------~~~~ 91 (871)
..+.+++..|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+.. +++.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455678899999999999999999998888776 456888899998 9999999999999665 5554
Q ss_pred EEEEc-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEEe-ecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 92 VKVFE-AHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIF-EGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 92 ~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+..+. .|.+.|.+++|+| +++++++|+.||.|++||++++.. .... ..|...+.+++|+| ++.++++|+.||.|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i 194 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECT-TSCEEEEECTTSCE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence 55554 6778999999999 999999999999999999998844 4443 45566899999999 89999999999999
Q ss_pred EEEECCCCCCe-EEEec-CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC---cccCeE--EEEEcCC
Q 002881 168 KIWNLGSPDPN-FTLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---HTHNVS--AVCFHPE 240 (871)
Q Consensus 168 ~i~d~~~~~~~-~~~~~-~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~--~i~~~p~ 240 (871)
++||+++++.. ..+.. |..+|.+++|+|++. ++++++ ++.|++||+++++.+..+.. |...+. +++|+|+
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~--~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY--WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEECTTSS--EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEeCCCC--EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 99999999877 77887 999999999999887 788888 55999999998877655543 333343 6999999
Q ss_pred CCEEEEEEC-CCcEEEEeCCCCeEEEEEecCCccEEEEEEee---CCCeEEEEEcCCeEEEe
Q 002881 241 LPIIITGSE-DGTVRIWHATTYRLENTLNYGLERVWAIGYMK---SSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 241 ~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~g~~dg~i~i~ 298 (871)
+++|++++. |+.|++|++.+....... .++..++|.+ +.+.+++++.||.+.++
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 999999998 999999998665433322 4567888988 88999999999999875
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.8e-29 Score=268.75 Aligned_cols=275 Identities=14% Similarity=0.150 Sum_probs=215.6
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECC
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADDMFIRVYNYN 87 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~ 87 (871)
..+.+|.+.|.+++|+|||++|++|+.+| ++||+..+++...... ...+..+.+.++++.++ +|+.|+.|++||..
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 35578999999999999999999988665 7899988876655433 23588899999998884 57778999999999
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE--EECCC
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS--ASLDR 165 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~~dg 165 (871)
+++.+..+. |...|.+++|+++. ++++ .|+.|++||+.+.......+.. +...++++| +.+++ |+.||
T Consensus 90 ~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~---~~la~~sg~~~g 159 (355)
T 3vu4_A 90 KKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN---GLLVYSNEFNLG 159 (355)
T ss_dssp TTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET---TEEEEEESSCTT
T ss_pred CCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc---cEEEEeCCCcCc
Confidence 999988887 66789999999864 4444 4789999999876222222222 344566666 56665 58899
Q ss_pred cEEEEECCCCC---------------C-eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCe-EEEEECCCCceEEEec-C
Q 002881 166 TIKIWNLGSPD---------------P-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLE-G 227 (871)
Q Consensus 166 ~i~i~d~~~~~---------------~-~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~-~ 227 (871)
.|++||+.++. + ...+.+|..+|.+++|+|++. ++++|+.||+ |++||+++++++..+. +
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~--~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD--MVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS--EEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC--EEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 99999998765 2 678899999999999999887 8999999998 9999999999999998 5
Q ss_pred -cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEE--------------------ec-CCccEEEEEEeeCC
Q 002881 228 -HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE--NTL--------------------NY-GLERVWAIGYMKSS 283 (871)
Q Consensus 228 -~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~--~~~--------------------~~-~~~~i~~i~~~~~~ 283 (871)
|...|.+++|+|++++|++++.|++|++||+..+... ..+ .. .......++|++++
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 9999999999999999999999999999998754311 110 00 11223678999999
Q ss_pred CeEEEEEcCCeEEEe
Q 002881 284 RRIVIGYDEGTIMVK 298 (871)
Q Consensus 284 ~~l~~g~~dg~i~i~ 298 (871)
+.|++++.||.+.+|
T Consensus 318 ~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 318 SLVVVWPHTRMIETF 332 (355)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCeEEEE
Confidence 999999999999886
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4e-29 Score=267.06 Aligned_cols=239 Identities=12% Similarity=0.062 Sum_probs=209.3
Q ss_pred eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEC
Q 002881 53 FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD---KVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDW 128 (871)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~ 128 (871)
...|...|++++|+|++++|++++.||.|++|++.+++ ....+..|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 34689999999999999999999999999999998877 3455568999999999999999 9999999999999999
Q ss_pred -CCCceEEEEeec--CCcceEEEEEecCCCCEEEEEECCCcEEEEECCC---------CCCeEEEecCCCCeeEEEEeec
Q 002881 129 -EKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---------PDPNFTLDAHQKGVNCVDYFTG 196 (871)
Q Consensus 129 -~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~i~~~~~ 196 (871)
.++ . ...+.+ |...|.+++|+| ++.+++++.||.|++||+++ +++...+. +...+.+++|+|+
T Consensus 87 ~~~~-~-~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 87 IGSP-S-FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSS-S-EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred ccCC-c-eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 876 3 366677 999999999998 78999999999999999987 66665555 7889999999865
Q ss_pred CCcCEEEEEeCCCeEEEEECCC-Cc--eEEEecCcccCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCC------eEEEE
Q 002881 197 GDKPYLITGSDDHTAKVWDYQT-KS--CVQTLEGHTHNVSAVCFHP-ELPIIITGSEDGTVRIWHATTY------RLENT 266 (871)
Q Consensus 197 ~~~~~l~~~~~dg~i~v~d~~~-~~--~~~~~~~~~~~v~~i~~~p-~~~~l~~~~~dg~v~iwd~~~~------~~~~~ 266 (871)
+ +++++.++.|++||+++ +. .......|...+.+++|+| ++.++++++.||.|++|++... +....
T Consensus 162 ~----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 162 R----LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp E----EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred c----EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 4 99999999999999987 54 3344556788999999999 9999999999999999999876 66777
Q ss_pred EecCCc---------cEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 267 LNYGLE---------RVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 267 ~~~~~~---------~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
+..+.. .|.+++|+|++++|++|+.||.+.+|..
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 777654 8999999999999999999999999843
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=7.1e-30 Score=274.23 Aligned_cols=244 Identities=11% Similarity=0.145 Sum_probs=199.1
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEE-----------cCCeEEEEeCCCCcee-EEee--------ecCCCEEEEEEeCCC
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASL-----------YSGTVCIWNYQSQTMA-KSFE--------VTELPVRSAKFVARK 69 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~-----------~dg~v~iwd~~~~~~~-~~~~--------~~~~~v~~~~~~~~~ 69 (871)
.+.+|.+.|.+++++ +..+++|. .|+.+++|++.+.... .... .++..+++++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 356788888888775 45666654 4678999998765322 1111 234568999999999
Q ss_pred CEEEEEe--CCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE-EEEeecCCcceE
Q 002881 70 QWVVAGA--DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSHYVM 146 (871)
Q Consensus 70 ~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~ 146 (871)
+++++++ .|++|+|||+.+++.+..+. |...|.+++|+|+|++|++++.++ +.+|+..++... ......|...|.
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEE
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEE
Confidence 9987654 68999999999999988886 777899999999999999998665 566666655343 345567888999
Q ss_pred EEEEecCCCCEEEEEECCC----cEEEEECCCCCC----eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC
Q 002881 147 QVTFNPKDTNTFASASLDR----TIKIWNLGSPDP----NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
+++|+| ++..+++++.|+ .+..|++..... ...+..|..+|++++|+|++. +|++|+.|+.|++||+++
T Consensus 224 ~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~--~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 224 KINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE--LAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC--EEEEEETTSCEEEEETTT
T ss_pred EEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC--ceEEEcCCCEEEEEECCC
Confidence 999999 888999998887 688898876543 345678899999999999987 899999999999999999
Q ss_pred CceEEEe-cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002881 219 KSCVQTL-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 219 ~~~~~~~-~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
++++..+ .+|...|++++|+|+|++|++||.|++|+||++..
T Consensus 301 ~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 301 LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999875 78999999999999999999999999999999853
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.5e-29 Score=276.69 Aligned_cols=250 Identities=13% Similarity=0.181 Sum_probs=215.5
Q ss_pred hhhcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCC-------ceeEEeeecCCCEEEEEEeCCC-CEEEEEeCC
Q 002881 8 KRKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADD 78 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 78 (871)
...+.+|.+.|.+++|+| ++.+|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+|++ ..|++++.|
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence 345778999999999999 9999999999999999999987 6678899999999999999998 699999999
Q ss_pred CeEEEEECCCCcEEEEE--ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe-ecCCcc-eEEEEEecCC
Q 002881 79 MFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-EGHSHY-VMQVTFNPKD 154 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~-v~~~~~~p~~ 154 (871)
|.|++||+.+++.+..+ ..|.+.|.+++|+|++++|++++.||.|++||++++ .....+ ..|... +.++.|+| +
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~ 231 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVS-E 231 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECS-T
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcC-C
Confidence 99999999999999999 889999999999999999999999999999999998 445555 677765 89999999 7
Q ss_pred CCEEEEE---ECCCcEEEEECCCCCC-eEEEe-cCCCCeeEEEEeecCCcCEEE-EEeCCCeEEEEECCCCce-EEEecC
Q 002881 155 TNTFASA---SLDRTIKIWNLGSPDP-NFTLD-AHQKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQTKSC-VQTLEG 227 (871)
Q Consensus 155 ~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~-~~~~~~ 227 (871)
+.++++| +.|+.|++||+++.+. ..... .+...+.++.|+|++. +++ +|+.||.|++||+.++++ +..+..
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~g~~dg~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN--IVYLCGKGDSSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT--EEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCC--EEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence 8888888 7899999999988664 33333 5678899999999987 565 566799999999998874 444443
Q ss_pred --cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE
Q 002881 228 --HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL 263 (871)
Q Consensus 228 --~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 263 (871)
|...|.+++|+|++.++++ .++.+++|++.++..
T Consensus 310 ~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 310 FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred cccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 4588999999999987764 467999999887653
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.8e-28 Score=257.49 Aligned_cols=248 Identities=21% Similarity=0.302 Sum_probs=213.1
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM- 89 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~- 89 (871)
+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++. +++..+++++.++.+++|+..+.
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCc
Confidence 457888999999999999999999999999999999999999999998887655 45678999999999999998865
Q ss_pred cEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---eEEEEeecCCcceEEEEEecCCCCEEE--EEECC
Q 002881 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW---MCTQIFEGHSHYVMQVTFNPKDTNTFA--SASLD 164 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~--~~~~d 164 (871)
..+..+.+|...+.++.+++++++|++++.||.|++||++++. ........+...|.++.++|.+.+.+. +++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence 4567788999999999999999999999999999999998753 223455667888999999996666654 45678
Q ss_pred CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l 244 (871)
++|++||......... ..+...+..+.|+|.+...++++|+.|+.|++||+++++++.++.+|.+.|++++|+|++++|
T Consensus 221 ~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l 299 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 299 (318)
T ss_dssp CEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred CEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 9999999988765554 446778999999998874222234479999999999999999999999999999999999999
Q ss_pred EEEECCCcEEEEeCCCC
Q 002881 245 ITGSEDGTVRIWHATTY 261 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~ 261 (871)
++||.||+|++||+...
T Consensus 300 ~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 300 ASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEETTTEEEEECCSCC
T ss_pred EEEecCCeEEEEECCCC
Confidence 99999999999998754
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=4e-28 Score=268.37 Aligned_cols=228 Identities=28% Similarity=0.514 Sum_probs=209.0
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 002881 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (871)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (871)
.|...|.++.| ++++|++|+.||.|++||+.+++....+.+|.+.|.+++| ++++|++|+.||.|++||+.++ ..
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-~~ 205 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG-EM 205 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC-CE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-cE
Confidence 45667888776 8999999999999999999999999999999999999999 6789999999999999999988 66
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCe---EEEecCCCCeeEEEEeecCCcCEEEEEeCCCeE
Q 002881 135 TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (871)
Q Consensus 135 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i 211 (871)
...+.+|...|.+++|++ +.+++|+.||.|++||+.++... ..+.+|...|.++.+ +++ ++++|+.||.|
T Consensus 206 ~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~s~~~dg~i 278 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK--YIVSASGDRTI 278 (435)
T ss_dssp EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT--EEEEEETTSEE
T ss_pred EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC--EEEEEeCCCeE
Confidence 777889999999999975 59999999999999999887765 567789999999998 444 89999999999
Q ss_pred EEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc
Q 002881 212 KVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 212 ~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
++||+++++++..+.+|...|.++.++ +.++++|+.||.|++||+.+++.+..+..|...|.+++| ++..|++|+.
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~ 354 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 354 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC
Confidence 999999999999999999999999995 579999999999999999999999999999999999998 7889999999
Q ss_pred CCeEEEe
Q 002881 292 EGTIMVK 298 (871)
Q Consensus 292 dg~i~i~ 298 (871)
||.+.+|
T Consensus 355 dg~i~vw 361 (435)
T 1p22_A 355 DGKIKVW 361 (435)
T ss_dssp TSCEEEE
T ss_pred CCcEEEE
Confidence 9999998
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8.7e-28 Score=259.36 Aligned_cols=285 Identities=16% Similarity=0.189 Sum_probs=227.6
Q ss_pred EEeCCCCceeEEeeecCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECCC-CcEE-EEEccCCCCeEEEEEcCCCCEEE
Q 002881 41 IWNYQSQTMAKSFEVTELPVRSAKFVAR---KQWVVAGADDMFIRVYNYNT-MDKV-KVFEAHTDYIRCVAVHPTLPYVL 115 (871)
Q Consensus 41 iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~i~~i~~~~~~~~l~ 115 (871)
.|+....+.+..+..|...|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+..|...|++++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3455666777888899999999999999 69999999999999999997 5554 77889999999999999999999
Q ss_pred EEECCCeEEEEECCCCceEEEEeecCCcceEEEEE--ecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEE
Q 002881 116 SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF--NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDY 193 (871)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 193 (871)
+++.||.|++||++++ .... ...|...|.+++| +| ++++|++++.||.|++||+++++....+..+. .+.++.+
T Consensus 103 s~~~dg~v~iwd~~~~-~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~ 178 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSN-QAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADV 178 (368)
T ss_dssp EEETTSEEEEEETTTT-EEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEE
T ss_pred EEcCCCcEEEEEcCCC-Ccee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEe
Confidence 9999999999999988 4433 5569999999999 77 77899999999999999999999888887654 5555555
Q ss_pred eecCCcCEEEEEeCCCeEEEEECCCCceEEEe--cCcccCeEEEEEcCCCCE----EEEEECCCcEEEEeCCCC---eEE
Q 002881 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL--EGHTHNVSAVCFHPELPI----IITGSEDGTVRIWHATTY---RLE 264 (871)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~v~~i~~~p~~~~----l~~~~~dg~v~iwd~~~~---~~~ 264 (871)
. +. .+++++.++.+.+|++......... ..+...+.++.+.++... +++++.||.|++|++... ...
T Consensus 179 ~--~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 179 I--YP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp E--TT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred c--CC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 4 33 6889999999999999876543322 224455666776665544 999999999999999877 445
Q ss_pred EEEecCCc------------cEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCc
Q 002881 265 NTLNYGLE------------RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (871)
Q Consensus 265 ~~~~~~~~------------~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (871)
..+..+.. .|.+++|+|++++|++|+.||.|++|..... ..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~----------------- 308 (368)
T 3mmy_A 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------TKL----------------- 308 (368)
T ss_dssp EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEE-----------------
T ss_pred eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---------cEE-----------------
Confidence 56666644 6999999999999999999999999843211 111
Q ss_pred ceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcC
Q 002881 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGD 373 (871)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~ 373 (871)
..+..+...++.++|+|+|++|++++.
T Consensus 309 --------------~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 309 --------------KTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp --------------EECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred --------------EEecCCCCCceEEEECCCCCeEEEEec
Confidence 111233445678999999999888873
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.2e-29 Score=272.42 Aligned_cols=281 Identities=12% Similarity=0.125 Sum_probs=201.5
Q ss_pred CCEEEEEEc---CCCCEEEEEEcCCeEEEEeCCCC-------ceeEE--eeecCCCEEEEEEeC----------------
Q 002881 16 ERVKSVDLH---PSEPWILASLYSGTVCIWNYQSQ-------TMAKS--FEVTELPVRSAKFVA---------------- 67 (871)
Q Consensus 16 ~~v~~i~~s---~~~~~la~~~~dg~v~iwd~~~~-------~~~~~--~~~~~~~v~~~~~~~---------------- 67 (871)
....++.|. |++..+++++.++.|.+|+.... ..... .-.+..++..+.|++
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 456778884 44444555556888999975321 11111 112344555665543
Q ss_pred ----CCCEEEEEeCCCeEEEEECCCCcEEE-----EEccCCCCeEEEEEcC--------CCCEEEEEECCCeEEEEECCC
Q 002881 68 ----RKQWVVAGADDMFIRVYNYNTMDKVK-----VFEAHTDYIRCVAVHP--------TLPYVLSSSDDMLIKLWDWEK 130 (871)
Q Consensus 68 ----~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~i~~i~~~~--------~~~~l~~~~~dg~i~iwd~~~ 130 (871)
++.+|++++.|++|++||..+++... .+.+|.+.|.+++|+| ++++|++|+.|++|+|||+++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 45679999999999999999886543 2468999999999998 788999999999999999988
Q ss_pred CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE-------------------------EecCC
Q 002881 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-------------------------LDAHQ 185 (871)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------~~~~~ 185 (871)
+ .....+..|..++.+++|+|++.++|++++.||+|++||+++++.... ..+|.
T Consensus 176 ~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 176 E-GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp T-EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred C-ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 7 445555678889999999996567899999999999999987654322 23566
Q ss_pred CCeeEEEEe-ecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEE------------------EcC--CCCEE
Q 002881 186 KGVNCVDYF-TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC------------------FHP--ELPII 244 (871)
Q Consensus 186 ~~i~~i~~~-~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~------------------~~p--~~~~l 244 (871)
..+.++.|+ +++. .+++++.|+.+++||+.++.....+..|...+..+. ++| ++.++
T Consensus 255 ~~v~~v~~~~~dg~--~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 255 SSLANVRWIGSDGS--GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA 332 (393)
T ss_dssp SSCSEEEEETTTTC--EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred ccceeeeeecCCCC--EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence 788899987 5565 799999999999999988776666555544444333 333 23366
Q ss_pred EEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEec
Q 002881 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~ 299 (871)
++|+.||.|++||..+++.......+..+|++++|+|||++||+++++|.+.+++
T Consensus 333 ~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp EEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 7788999999999999988887778888999999999999999999999877753
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-29 Score=295.49 Aligned_cols=251 Identities=19% Similarity=0.265 Sum_probs=215.1
Q ss_pred eEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC--CCcEEEEEccCCCCeEEEEEcCC--CCEEEEEECCCeEEE
Q 002881 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN--TMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKL 125 (871)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i 125 (871)
+..+.+|.++|++++|+|++++|++|+.||.|++|++. +++....+.+|.++|++++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34677899999999999999999999999999999998 55677888999999999999988 899999999999999
Q ss_pred EECCCCc-eEEEEeecCCcceEEEEEecCC--CCEEEEEECCCcEEEEECCCC--CCeEEEecCCCCeeEEEEeecC---
Q 002881 126 WDWEKGW-MCTQIFEGHSHYVMQVTFNPKD--TNTFASASLDRTIKIWNLGSP--DPNFTLDAHQKGVNCVDYFTGG--- 197 (871)
Q Consensus 126 wd~~~~~-~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~--- 197 (871)
||+.++. .....+.+|...|.+++|+| + ++.+++|+.||.|++||++++ .....+..|...|.++.|+|..
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 9999873 25566778999999999999 6 899999999999999999877 3456677899999999999941
Q ss_pred --------CcCEEEEEeCCCeEEEEECCCC----ceEEEecCcccCeEEEEEcCC---CCEEEEEECCCcEEEEeCCCCe
Q 002881 198 --------DKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHTHNVSAVCFHPE---LPIIITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 198 --------~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~i~~~p~---~~~l~~~~~dg~v~iwd~~~~~ 262 (871)
++.++++|+.||.|++||++++ .+...+.+|...|++++|+|+ +.++++|+.||.|++||+.++.
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 1237999999999999999876 456778889999999999999 8999999999999999998764
Q ss_pred -----EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCC
Q 002881 263 -----LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (871)
Q Consensus 263 -----~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~ 301 (871)
.......+.+.|++++|+|+++.+++|+.||.+++|...
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 222233466789999999999999999999999998443
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.1e-27 Score=256.32 Aligned_cols=246 Identities=13% Similarity=0.147 Sum_probs=187.8
Q ss_pred EEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEE-EEEEC
Q 002881 41 IWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV-LSSSD 119 (871)
Q Consensus 41 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~ 119 (871)
||++.+...+.....|..+|++++|+|||++|++|+.++ +++|++++++....... ..+..+++.++++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566677777777788999999999999999999998776 78999988776655432 247888999988877 46777
Q ss_pred CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCeEEEecCCCCeeEEEEeecCC
Q 002881 120 DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGD 198 (871)
Q Consensus 120 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~ 198 (871)
|+.|++||..++ .....+. +...|.++.|++ +.++++ .++.|++||+.+. +.+..+.. +...+++++ .
T Consensus 80 d~~v~iWd~~~~-~~~~~~~-~~~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~ 148 (355)
T 3vu4_A 80 KEVVHIWDDVKK-QDVSRIK-VDAPVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--G 148 (355)
T ss_dssp TTEEEEEETTTT-EEEEEEE-CSSCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--T
T ss_pred ccEEEEEECCCC-cEEEEEE-CCCceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--c
Confidence 899999999988 4455554 667899999987 234444 4789999999887 55555443 344555665 2
Q ss_pred cCEEEE--EeCCCeEEEEECCCCc---------------e-EEEecCcccCeEEEEEcCCCCEEEEEECCCc-EEEEeCC
Q 002881 199 KPYLIT--GSDDHTAKVWDYQTKS---------------C-VQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHAT 259 (871)
Q Consensus 199 ~~~l~~--~~~dg~i~v~d~~~~~---------------~-~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~-v~iwd~~ 259 (871)
++++ |+.+|.|++||+.++. + +..+.+|...|++++|+|++.+|++|+.||+ |++||+.
T Consensus 149 --~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 149 --LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp --EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred --EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 5665 5889999999999765 2 6788999999999999999999999999998 9999999
Q ss_pred CCeEEEEEe-c-CCccEEEEEEeeCCCeEEEEEcCCeEEEecCCC
Q 002881 260 TYRLENTLN-Y-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (871)
Q Consensus 260 ~~~~~~~~~-~-~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~ 302 (871)
+++.+..+. . |...|.+++|+|++++|++++.||.+++|....
T Consensus 227 ~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 227 DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 999999998 4 788999999999999999999999999996443
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=7.8e-28 Score=266.26 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=235.9
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEE-----eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-----FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
...+.+++|+|++.++++++.++.|++||..+++.... +..|...|.+++|+|++..+++++.|+.|++||++++
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 34566999999777777777788999999999988773 3467889999999999999999999999999999999
Q ss_pred cEEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE------
Q 002881 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS------ 162 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------ 162 (871)
+.+..+..|...+.+++|+|+++++++++ .|+.|.+||++++ .....+..+ ..+.+++|+| +++.+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-LEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQ 278 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTT
T ss_pred eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-cEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCcc
Confidence 99999999999999999999999886555 7999999999987 555555544 4589999999 777888877
Q ss_pred --CCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 002881 163 --LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 163 --~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~ 240 (871)
.||.|++||+.+++....+ .+...+.+++|+|+++. ++++++.++.|++||+.+++.+..+. +...+.+++|+|+
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~-l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~d 355 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENK-IYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPD 355 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTE-EEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT
T ss_pred ccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCE-EEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCC
Confidence 5889999999888765554 34557889999998864 56777899999999999988887776 6678999999999
Q ss_pred CCEEEEEEC---------------CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc-CCeEEEe
Q 002881 241 LPIIITGSE---------------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMVK 298 (871)
Q Consensus 241 ~~~l~~~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~-dg~i~i~ 298 (871)
++++++++. ||.|++||..+++....+..+ ..+.+++|+|+++.|++++. ++.+.+|
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 998988876 579999999999988888764 67999999999999998875 9999997
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-27 Score=262.94 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=203.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEEEEcc-------------------------------------
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD---KVKVFEA------------------------------------- 97 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~------------------------------------- 97 (871)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966655 57899999999998 5555543
Q ss_pred -----------------CCCCeEEEEEcCCCCEE-EEEECCCeEEEEECC--CCceEEEEee--cCCcceEEEEEecCCC
Q 002881 98 -----------------HTDYIRCVAVHPTLPYV-LSSSDDMLIKLWDWE--KGWMCTQIFE--GHSHYVMQVTFNPKDT 155 (871)
Q Consensus 98 -----------------~~~~i~~i~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~--~~~~~v~~~~~~p~~~ 155 (871)
|.+.|++++|+|++++| ++|+.||.|++||+. ++ .....+. .|...|.+++|+| ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~sp-~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLRKRFCFSKRPNAISIAE-DD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEEEEEECSSCEEEEEECT-TS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeeeecccCCCCceEEEEcC-CC
Confidence 33379999999999996 889999999999998 66 4444444 5678899999999 88
Q ss_pred CEEEEEECCCcEEEEECCCCCCeE----EEecCCCCeeEEEEeec---CCcCEEEEEeCCCeEEEEECCCCceEEE-ecC
Q 002881 156 NTFASASLDRTIKIWNLGSPDPNF----TLDAHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTKSCVQT-LEG 227 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~i~~~~~---~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~ 227 (871)
++|++++.+|.|.+|++.++.... .+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+.. +.+
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ--FIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE--EEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc--EEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 999999999999999998776543 66788999999999998 55 899999999999999999988877 568
Q ss_pred cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC-------------------------CccEEEEEEeeC
Q 002881 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-------------------------LERVWAIGYMKS 282 (871)
Q Consensus 228 ~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------------~~~i~~i~~~~~ 282 (871)
|...|.+++|+ ++.+|++++.|+.|++||+.+++.+..+..+ ...+.+++|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 9999999999999999999999988877632 346899999999
Q ss_pred CCeEEEEE-cCCeEEEec
Q 002881 283 SRRIVIGY-DEGTIMVKI 299 (871)
Q Consensus 283 ~~~l~~g~-~dg~i~i~~ 299 (871)
+++|++++ .++.+.+|.
T Consensus 319 ~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILE 336 (450)
T ss_dssp SSEEEEEETTCSEEEEEE
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 99999999 899999983
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.6e-26 Score=247.56 Aligned_cols=264 Identities=16% Similarity=0.139 Sum_probs=221.6
Q ss_pred EEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEE
Q 002881 29 WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWV-VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107 (871)
Q Consensus 29 ~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~ 107 (871)
.+++++.++.|++||..+++....+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 56777789999999999999988888664 58999999999987 566689999999999999988887665 8999999
Q ss_pred cCCCCEEEEEE-CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE-EEEECCCcEEEEECCCCCCeEEEecCC
Q 002881 108 HPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF-ASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (871)
Q Consensus 108 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~ 185 (871)
+|++++|++++ .++.|.+||+.++ .....+..+ ..+.+++|+| +++.+ ++++.++.|++||+.+++....+..+
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 157 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG- 157 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred CCCCCEEEEEECCCCEEEEEECCCC-eEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence 99999886555 5799999999988 555555544 4689999999 66655 78888999999999988877777654
Q ss_pred CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE---CCCcEEEEeCCCCe
Q 002881 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS---EDGTVRIWHATTYR 262 (871)
Q Consensus 186 ~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~---~dg~v~iwd~~~~~ 262 (871)
..+.++.|+|+++. ++++++.++.|++||+++++....+. +...+.+++|+|+++++++++ .++.|++||+.+++
T Consensus 158 ~~~~~~~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 158 RSPKGIAVTPDGTK-VYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp SSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred CCcceEEECCCCCE-EEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 45689999998873 34677889999999999998877776 456789999999999999888 68999999999999
Q ss_pred EEEEEecCCccEEEEEEeeCCCeE-EEEEcCCeEEEecCC
Q 002881 263 LENTLNYGLERVWAIGYMKSSRRI-VIGYDEGTIMVKIGR 301 (871)
Q Consensus 263 ~~~~~~~~~~~i~~i~~~~~~~~l-~~g~~dg~i~i~~~~ 301 (871)
.+..+..+ ..+.+++|+|+++.+ ++++.++.+.+|...
T Consensus 236 ~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 236 ITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 88888776 468899999999988 556789999998544
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=8.5e-27 Score=257.90 Aligned_cols=321 Identities=9% Similarity=0.146 Sum_probs=245.6
Q ss_pred CCCCEEEEE---EcCCCCEEEEEEc--------------CC--eEEEEeCCCC--ceeEEeeecCCCEEEEEEeCCCCEE
Q 002881 14 RSERVKSVD---LHPSEPWILASLY--------------SG--TVCIWNYQSQ--TMAKSFEVTELPVRSAKFVARKQWV 72 (871)
Q Consensus 14 h~~~v~~i~---~s~~~~~la~~~~--------------dg--~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l 72 (871)
....+..++ |+|++..+++.+. ++ .|..||..++ +.+..+..+ ..+.+++|+|++..+
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 345678888 9998887765432 22 4444554445 455555544 456699999977777
Q ss_pred EEEeCCCeEEEEECCCCcEEEE-----EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEE
Q 002881 73 VAGADDMFIRVYNYNTMDKVKV-----FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (871)
Q Consensus 73 ~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 147 (871)
++++.++.|++||+.+++.... +.+|...|.+++|+|++.++++++.|+.|++||++++ .....+..|...+.+
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~ 216 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-AYKATVDLTGKWSKI 216 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-CEEEEEECSSSSEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-eEEEEEcCCCCCeeE
Confidence 8888899999999999988873 4478889999999999999999999999999999987 556666788889999
Q ss_pred EEEecCCCCEE-EEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe--------CCCeEEEEECCC
Q 002881 148 VTFNPKDTNTF-ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS--------DDHTAKVWDYQT 218 (871)
Q Consensus 148 ~~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~--------~dg~i~v~d~~~ 218 (871)
++|+| +++.+ ++++.|+.|++||+++++....+.. ...+.+++|+|+++ ++++++ .||.|++||+.+
T Consensus 217 ~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~--~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 217 LLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGK--ELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp EEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSS--EEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred EEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCC--EEEEEECCCCccccCCCeEEEEECCC
Confidence 99999 56666 5555899999999998877666554 45689999999887 677776 588999999998
Q ss_pred CceEEEecCcccCeEEEEEcCCCCEE-EEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc------
Q 002881 219 KSCVQTLEGHTHNVSAVCFHPELPII-ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD------ 291 (871)
Q Consensus 219 ~~~~~~~~~~~~~v~~i~~~p~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~------ 291 (871)
++.+..+. +...+.+++|+|+++.+ ++++.|+.|++||+.+++....+. +...+.+++|+|+++.+++++.
T Consensus 293 ~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 293 EKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp TEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred CcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccc
Confidence 88776653 56688999999999754 666899999999999999888776 4477999999999999998876
Q ss_pred ---------CCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEEC
Q 002881 292 ---------EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (871)
Q Consensus 292 ---------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 362 (871)
||.+.+|..... +.+ .. + .. ...+..++|+
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~---------~~~---------------------------~~-~---~~-~~~~~~~~~s 409 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTD---------TVK---------------------------EF-W---EA-GNQPTGLDVS 409 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTT---------EEE---------------------------EE-E---EC-SSSEEEEEEC
T ss_pred cccccccccceEEEEEECCCC---------cEE---------------------------EE-e---cC-CCCCceEEEc
Confidence 356766532211 111 00 0 00 1245689999
Q ss_pred CCCCEEEEEc--CCcEEEEEeec
Q 002881 363 PNGRFVVVCG--DGEYIIYTALA 383 (871)
Q Consensus 363 ~~g~~lav~~--~~~~~i~~~~~ 383 (871)
|+|++|++++ ++.+.+|+...
T Consensus 410 ~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 410 PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCCEEEEEECCCCeEEEEEecC
Confidence 9999888764 78899987653
No 122
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-29 Score=226.31 Aligned_cols=134 Identities=23% Similarity=0.397 Sum_probs=130.6
Q ss_pred hhhcccCcccceeeeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHH
Q 002881 635 AIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGIS 714 (871)
Q Consensus 635 a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~ 714 (871)
|+++++||+++|++||++|+++.|+++|+.++++.+|++||+.|+.+|++++|++||.+++|++++.+||...||.++++
T Consensus 1 AL~~~~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 1 ALQFVQDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp CCTTSSCHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred CccccCChHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHH
Q 002881 715 KLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVS 768 (871)
Q Consensus 715 ~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~~~ 768 (871)
++++++...|+++.||++++++|++++|+++|++++||++|+.+|++|+|+++.
T Consensus 81 kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a 134 (177)
T 3mkq_B 81 KMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAA 134 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999999999999999999999999999997543
No 123
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=4.1e-26 Score=279.94 Aligned_cols=426 Identities=12% Similarity=0.070 Sum_probs=299.5
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcC------CeEEEEeCCCCceeEEeeecCCCE-------EEEEEeCCCCEEEE
Q 002881 8 KRKLAQRSERVKSVDLHPSEPWILASLYS------GTVCIWNYQSQTMAKSFEVTELPV-------RSAKFVARKQWVVA 74 (871)
Q Consensus 8 ~~~~~~h~~~v~~i~~s~~~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~ 74 (871)
.+.+.+|...+.+++|||||++||+++.+ ..|.+|+..+++ .+.+..|...+ ..++|+|||+.+++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 35677899999999999999999987643 379999988876 56777788888 99999999997777
Q ss_pred EeCC------CeEEEEECCCCcEE-------------------------------------------------EEEccCC
Q 002881 75 GADD------MFIRVYNYNTMDKV-------------------------------------------------KVFEAHT 99 (871)
Q Consensus 75 ~~~d------g~i~iw~~~~~~~~-------------------------------------------------~~~~~~~ 99 (871)
++.+ ..|.+|++.+++.. ..+..|.
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7644 36888887655422 1223567
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeE
Q 002881 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179 (871)
Q Consensus 100 ~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 179 (871)
..+.++.|+++ ..+++++.++.+.+|.+.........+..|. .+...+|+| +++.++.+ .++.|.+||+.. ..+.
T Consensus 204 ~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~-~~l~ 278 (1045)
T 1k32_A 204 THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNT-DGRRILFS-KGGSIYIFNPDT-EKIE 278 (1045)
T ss_dssp SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEE-SSSCEEEE-ETTEEEEECTTT-CCEE
T ss_pred CcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcC-CCCEEEEE-eCCEEEEecCCc-eEee
Confidence 77888899987 5667777889889997653222334444454 356779999 77777776 489999999843 3333
Q ss_pred EEec-----------CCCCeeEEEEe-ecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc-CeEEEEEcCCCCEEEE
Q 002881 180 TLDA-----------HQKGVNCVDYF-TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIIT 246 (871)
Q Consensus 180 ~~~~-----------~~~~i~~i~~~-~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l~~ 246 (871)
.+.. +...+.+++|+ |++. .+++++ ++.|.+|+..++... .+..+.. .+..++|+ +|+.+++
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~--~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGD--LIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGGG--CEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEE
T ss_pred eeccCcccccccccccccccceeeecCCCCC--EEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEE
Confidence 4333 23368999999 9987 466666 889999999877654 4556666 89999999 9999999
Q ss_pred EECCCcEE-EEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEE
Q 002881 247 GSEDGTVR-IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTV 325 (871)
Q Consensus 247 ~~~dg~v~-iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (871)
++.++.+. +|+..+++... +..+...+..++|+|||+.|++++.++.+.+|.....
T Consensus 354 ~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---------------------- 410 (1045)
T 1k32_A 354 GTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---------------------- 410 (1045)
T ss_dssp EETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----------------------
T ss_pred EECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC----------------------
Confidence 99888888 99988776543 3366678999999999999999999998888632211
Q ss_pred EEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcC-----------CcEEEEEeecccc----cCcC
Q 002881 326 NIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGD-----------GEYIIYTALAWRN----RSFG 390 (871)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~-----------~~~~i~~~~~~~~----~~~~ 390 (871)
+...+. ..+...+..++|+|||++|++++. +.+.+|+...... .+..
T Consensus 411 --------------~~~~~~----~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~ 472 (1045)
T 1k32_A 411 --------------KPTVIE----RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 472 (1045)
T ss_dssp --------------CEEEEE----ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSS
T ss_pred --------------ceEEec----cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCc
Confidence 111000 012224568999999999987763 3788888654331 2234
Q ss_pred ceeEEEEecCCcEEEEecC-CeEEEeec------------------c------------------------cccceeeec
Q 002881 391 SALEFVWSSDGEYAVRESS-SKIKIFSK------------------N------------------------FQEKRSVRP 427 (871)
Q Consensus 391 ~~~~~~~s~~~~~~~~~~~-~~i~i~~~------------------~------------------------~~~~~~~~~ 427 (871)
....++|+|+|++++..++ +...+|+. . .........
T Consensus 473 ~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l 552 (1045)
T 1k32_A 473 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI 552 (1045)
T ss_dssp BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEEC
T ss_pred ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEc
Confidence 5678899999998877663 33333321 0 000000000
Q ss_pred ----------CccceeeecCcEEEE------------E-eCC-eEEEEeccCCcEEEEEEcceeEEEEcCCCCEEEEEeC
Q 002881 428 ----------TFSAERIYGGTLLAM------------C-SND-FICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASD 483 (871)
Q Consensus 428 ----------~~s~~~i~~~~~La~------------~-~~~-~v~~~d~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~ 483 (871)
.++++ +.++++ . ... .++.||+.+++.. .+...+..+++||||++|++++.
T Consensus 553 ~~~~~~~~~~~~s~d----g~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~v~~~~~S~DG~~l~~~~~ 627 (1045)
T 1k32_A 553 NVDPGDYRMIIPLES----SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVKNNLTDLRLSADRKTVMVRKD 627 (1045)
T ss_dssp SCCCBCEEEEEECSS----EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEEEEEEEEEECTTSCEEEEEET
T ss_pred CCCCCChhheEEcCC----CeEEEEecccCcccccccccCCCceEEEEECCCCcEE-EeecCcceEEECCCCCEEEEEcC
Confidence 22333 665664 1 122 8999999988753 33367889999999999999998
Q ss_pred CeEEEEE
Q 002881 484 TSFYILK 490 (871)
Q Consensus 484 ~~~~~l~ 490 (871)
+...+|.
T Consensus 628 ~~i~~~d 634 (1045)
T 1k32_A 628 DGKIYTF 634 (1045)
T ss_dssp TSCEEEE
T ss_pred CcEEEEe
Confidence 8777765
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=7.2e-28 Score=261.76 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=181.8
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCceeE-----EeeecCCCEEEEEEeC--------CCCEEEEEeCCCeEEEEECCC
Q 002881 22 DLHPSEPWILASLYSGTVCIWNYQSQTMAK-----SFEVTELPVRSAKFVA--------RKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 22 ~~s~~~~~la~~~~dg~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iw~~~~ 88 (871)
.+++++.+|++++.|++|+|||..+++... .+.+|.+.|++++|+| ++++|++|+.|++|+|||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 334456689999999999999998886543 3567999999999998 889999999999999999999
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCceEEE------------------------EeecCCc
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQ------------------------IFEGHSH 143 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~------------------------~~~~~~~ 143 (871)
+..+..+..|..++.+++|+|++. +|++|+.||.|++||++++..... ...+|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 888888888999999999999875 799999999999999987632211 1235777
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCee------------------EEEEeecCCcCEEEEE
Q 002881 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVN------------------CVDYFTGGDKPYLITG 205 (871)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~------------------~i~~~~~~~~~~l~~~ 205 (871)
.+.++.|.+.++..+++++.|+++++||+..+.....+..+...+. ...++|..++.++++|
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 8899999855899999999999999999987665544443333322 2344554455467788
Q ss_pred eCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 206 SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 206 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
+.||.|++||..++++......|..+|.+++|+|+|++|++++.+| +.+|.+
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 8999999999999998888888999999999999999999999765 556654
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=6.6e-26 Score=229.37 Aligned_cols=286 Identities=16% Similarity=0.136 Sum_probs=200.0
Q ss_pred hhhhhhcccCCC----CEEEEEEcCCCC---EEEEEEcCCeEEEEeCCCC---ceeEEeeecCCCEEEEEEeCCCCEEEE
Q 002881 5 LEIKRKLAQRSE----RVKSVDLHPSEP---WILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVARKQWVVA 74 (871)
Q Consensus 5 ~~~~~~~~~h~~----~v~~i~~s~~~~---~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~ 74 (871)
+++..+++.-++ .+.++-|-..|- .+++++ ...|++|+..++ +.+.+++.|+.+|..+.+.||-.-|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 344445554444 356677765443 677777 678999999998 888999999999999988886433322
Q ss_pred EeC-C---CeEEEEECCCC----cEEEEEccCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceEEEEeecCCcc
Q 002881 75 GAD-D---MFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHPTLPYVLSSS--DDMLIKLWDWEKGWMCTQIFEGHSHY 144 (871)
Q Consensus 75 ~~~-d---g~i~iw~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~ 144 (871)
..- + +.|+..-+... .......+|...|..+ ++++.+.+++ .|+.|++|++............|...
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~ 180 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE 180 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence 211 0 11111111111 1111112344334443 4554444433 48999999995533566666788888
Q ss_pred eEEEEEec--CCCCEEEEEECCCcEEEEECCCCCCeEEEecCC---CCeeEEEEeecCCcCEE------------EEEeC
Q 002881 145 VMQVTFNP--KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ---KGVNCVDYFTGGDKPYL------------ITGSD 207 (871)
Q Consensus 145 v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~~l------------~~~~~ 207 (871)
+..++|+| .++..|++++.|++|++||+.+++.+.++.+|. ..+.+++|+|++. ++ ++|+.
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~--~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL--LFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE--EEEEEC------------C
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC--EEEEeccCCCcceeeccCC
Confidence 88888887 457899999999999999999999999998654 3577789999876 44 66888
Q ss_pred CCeEEEEECCCCceEEEe-----cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEE-EEEEee
Q 002881 208 DHTAKVWDYQTKSCVQTL-----EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVW-AIGYMK 281 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~-----~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~-~i~~~~ 281 (871)
|++|++||..+++.+..+ .+|...+.+..++ +.++++++.||+|+|||+.+++.+.++..|...+. +++|+|
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 999999999999887665 3566555544444 78999999999999999999999999988877665 589999
Q ss_pred CCCeEEEEEcCCeEEEe
Q 002881 282 SSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 282 ~~~~l~~g~~dg~i~i~ 298 (871)
+|++|++|+.|++|++|
T Consensus 337 DG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 337 TDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp SSSEEEEECTTSCEEEE
T ss_pred CCCEEEEEECCCcEEEe
Confidence 99999999999999998
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=7.4e-25 Score=238.69 Aligned_cols=254 Identities=10% Similarity=0.063 Sum_probs=210.5
Q ss_pred hhcccCCCCEEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC
Q 002881 9 RKLAQRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNY 86 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~ 86 (871)
..+.+| ..+.+++|+|++++++ +++.++.|++||..+++.+..+..+. .+.+++|+|++++|++++ .++.|++||+
T Consensus 26 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~ 103 (391)
T 1l0q_A 26 ATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (391)
T ss_dssp EEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence 344545 4589999999999874 55579999999999999988887655 899999999999886555 5799999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE-EEEECC
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF-ASASLD 164 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~d 164 (871)
.+++.+..+..| ..+.+++|+|+++.| ++++.++.|++||+.++ .....+..+ ..+.+++|+| +++.+ ++++.+
T Consensus 104 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~ 179 (391)
T 1l0q_A 104 TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAVTP-DGTKVYVANFDS 179 (391)
T ss_dssp TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEECT-TSSEEEEEETTT
T ss_pred CCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceEEECC-CCCEEEEEeCCC
Confidence 999988887755 468999999999987 67778999999999988 555555555 4579999999 56655 677889
Q ss_pred CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe---CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS---DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~ 241 (871)
+.|++||+++++....+. +...+.+++|+|++. ++++++ .++.|++||+.+++.+..+..+. .+.+++|+|++
T Consensus 180 ~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~--~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg 255 (391)
T 1l0q_A 180 MSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT--KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDG 255 (391)
T ss_dssp TEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS--EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEEe-cCCCccceEECCCCC--EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCC
Confidence 999999999887666655 456789999999887 577776 68999999999999888887654 57899999999
Q ss_pred CEE-EEEECCCcEEEEeCCCCeEEEEEecCCc
Q 002881 242 PII-ITGSEDGTVRIWHATTYRLENTLNYGLE 272 (871)
Q Consensus 242 ~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 272 (871)
+++ ++++.|+.|++||+.+++....+..+..
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 877 5668899999999999999888876644
No 127
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.6e-23 Score=257.06 Aligned_cols=407 Identities=11% Similarity=0.072 Sum_probs=287.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECC
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYNYN 87 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~ 87 (871)
+.+.+.+.+||| +.|+.++. +.|.+|+..+++. +.+..|...+.+++|||||++|++++.+ ..|++|+..
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~ 88 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE 88 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC
Confidence 567889999996 47888764 7999999987764 5677799999999999999999988643 489999998
Q ss_pred CCcEEEEEccCCCCe-------EEEEEcCCCCEEEEEECC------CeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002881 88 TMDKVKVFEAHTDYI-------RCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i-------~~i~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (871)
+++ ...+..|...+ ..++|+|+|+.+++++.+ ..|.+|++.++ ....... +. ...+.|+| +
T Consensus 89 ~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~~-~~--~~~~~~sp-G 162 (1045)
T 1k32_A 89 NGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI-NFVPLNL-GP--ATHILFAD-G 162 (1045)
T ss_dssp TTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT-EEEECCS-CS--CSEEEEET-T
T ss_pred CCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCC-CeEEecC-CC--cceeeeCC-C
Confidence 876 56778888888 899999999977777644 46888888776 3333332 22 34677998 4
Q ss_pred CCEEEEEEC------------CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-Cce
Q 002881 155 TNTFASASL------------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSC 221 (871)
Q Consensus 155 ~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~ 221 (871)
++++++. +....+|....+.....+..|...+.++.|+++ . ++++++.++.+.+|.+.. +..
T Consensus 163 --~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~--l~~~~~~dg~~~l~~~~~~g~~ 237 (1045)
T 1k32_A 163 --RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R--IYFITDIDGFGQIYSTDLDGKD 237 (1045)
T ss_dssp --EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E--EEEEECTTSSCEEEEEETTSCS
T ss_pred --EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E--EEEEEeccCceEEEEEeCCCCc
Confidence 7887753 234556643333445566889999999999876 2 677788888888887653 334
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec-----------CCccEEEEEEe-eCCCeEEEE
Q 002881 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-----------GLERVWAIGYM-KSSRRIVIG 289 (871)
Q Consensus 222 ~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~i~~i~~~-~~~~~l~~g 289 (871)
...+..|. .+...+|+|+|+.++.++ ++.|++|+....+.. .+.. +...+.+++|+ |+|+.|+++
T Consensus 238 ~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~ 314 (1045)
T 1k32_A 238 LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV 314 (1045)
T ss_dssp CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE
T ss_pred ceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEE
Confidence 45555454 456779999999888875 899999998544433 4443 22368899999 999999988
Q ss_pred EcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCcccc-CCceEEECCCCCEE
Q 002881 290 YDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDL-YPQSLKHNPNGRFV 368 (871)
Q Consensus 290 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l 368 (871)
+ ++.+.+|......... +..... .+..++|+ ||+.+
T Consensus 315 ~-~~~i~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 315 S-RGQAFIQDVSGTYVLK-----------------------------------------VPEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp E-TTEEEEECTTSSBEEE-----------------------------------------CSCCSCEEEEEECSS-SEEEE
T ss_pred E-cCEEEEEcCCCCceEE-----------------------------------------ccCCCcceEEeeeEc-CCCeE
Confidence 7 6667665322111100 001111 33578899 99988
Q ss_pred EEEcC-CcEE-EEEeeccc----ccCcCceeEEEEecCCcEEEEec-CCeEEEeecccccceeee---------cCccce
Q 002881 369 VVCGD-GEYI-IYTALAWR----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVR---------PTFSAE 432 (871)
Q Consensus 369 av~~~-~~~~-i~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~-~~~i~i~~~~~~~~~~~~---------~~~s~~ 432 (871)
+++++ +.+. +|+..... ..+...+..++|+|+|+++++.+ ++.|++||+.......+. ..|+|+
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN 431 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred EEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCC
Confidence 88774 4455 55543321 12335678999999999887776 679999997654332221 156787
Q ss_pred eeecCcEEEEEeC-----------CeEEEEeccCCcEEEEEE---cceeEEEEcCCCCEEEEEeCCeE
Q 002881 433 RIYGGTLLAMCSN-----------DFICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDTSF 486 (871)
Q Consensus 433 ~i~~~~~La~~~~-----------~~v~~~d~~~~~~~~~~~---~~i~~i~~s~~~~~la~~~~~~~ 486 (871)
|++|++++. ..|++||+.+++ +..+. ..+..+.|+|||++|++.+.++.
T Consensus 432 ----G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~ 494 (1045)
T 1k32_A 432 ----SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSL 494 (1045)
T ss_dssp ----SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred ----CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccC
Confidence 888877653 289999999887 44333 25778999999999999887544
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=2e-25 Score=225.81 Aligned_cols=244 Identities=11% Similarity=0.041 Sum_probs=173.2
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEE-EEEcC---CeEEEEeCCCC----ceeEEeeecCCCEEEEEEeCCCCEEEEEe-
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWIL-ASLYS---GTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVARKQWVVAGA- 76 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la-~~~~d---g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 76 (871)
+..+++++|+.+|..+.+.||..-|+ ++..+ +.|+..-+... .....-.+|...|..+ ++++.+.+++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~ 153 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGT 153 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEeccc
Confidence 45567778888888888888654333 33221 11221111111 1111112344344443 5666555543
Q ss_pred -CCCeEEEEEC-CCCcEEEEEccCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCceEEEEeecCC---cceEEE
Q 002881 77 -DDMFIRVYNY-NTMDKVKVFEAHTDYIRCVAVHP---TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---HYVMQV 148 (871)
Q Consensus 77 -~dg~i~iw~~-~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~ 148 (871)
.|+.|++|++ .+++.+..+..|...++.++|+| ++..|++|+.|++|+|||++++ +....+.+|. ..+.++
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~v 232 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHK 232 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEE
T ss_pred CCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEE
Confidence 4899999999 45888888889999999999999 7799999999999999999998 5666666543 357788
Q ss_pred EEecCCCCEE------------EEEECCCcEEEEECCCCCCeEEE-----ecCCCCeeEEEEeecCCcCEEEEEeCCCeE
Q 002881 149 TFNPKDTNTF------------ASASLDRTIKIWNLGSPDPNFTL-----DAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (871)
Q Consensus 149 ~~~p~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i 211 (871)
+|+| ++.++ ++|+.|++|++||..+++.+..+ .+|...+.+..+ ++. ++++++.|++|
T Consensus 233 afSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~--~lASgS~DgTI 307 (356)
T 2w18_A 233 AYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDH--CAAAILTSGTI 307 (356)
T ss_dssp EEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETT--EEEEEETTSCE
T ss_pred EECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCC--EEEEEcCCCcE
Confidence 9999 67665 56888999999999988766554 244444433333 333 79999999999
Q ss_pred EEEECCCCceEEEecCcccCeE-EEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 212 KVWDYQTKSCVQTLEGHTHNVS-AVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 212 ~v~d~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
++||+.+++++.++.+|...+. +++|+|+|++|++|+.|++|++||+
T Consensus 308 kIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999887655 6899999999999999999999984
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.5e-24 Score=240.16 Aligned_cols=270 Identities=14% Similarity=0.133 Sum_probs=220.0
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCcEEEEEccCC
Q 002881 22 DLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY--NTMDKVKVFEAHT 99 (871)
Q Consensus 22 ~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~ 99 (871)
+|+|++..+++++.+++|.+||..+++.+.++..+.. +..++|+|+|++|++++.|+.|.+||+ .+++.+..+.. .
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence 4889998888888899999999999999999885433 899999999999999999999999999 88888888874 4
Q ss_pred CCeEEEEEcC----CCCEEEEEEC-CCeEEEEECCCCceEEEEeec----------C-CcceEEEEEecCCCCEEEEEEC
Q 002881 100 DYIRCVAVHP----TLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEG----------H-SHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 100 ~~i~~i~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~----------~-~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
..+..++|+| +|+++++++. +++|.+||..+. .+...+.. | ...+.++.++|++...+++...
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 5689999999 9999999884 899999999988 44444443 2 2368999999966677788888
Q ss_pred CCcEEEEECCCCCCeE--EEecCCCCeeEEEEeecCCcCEEEE-EeCCCeEEEEECCCCceEEEecC----cccCeEEEE
Q 002881 164 DRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVC 236 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~----~~~~v~~i~ 236 (871)
++.|.+||..+.+... .+ .+...+..+.|+|+++ ++++ +..++.|.+||..+++++..+.. |.+....+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~--~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR--YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSC--EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCC--EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 9999999998766544 33 3456678899999987 5554 45689999999999998888764 44433333
Q ss_pred EcCC-CCEEEEEE-CCCcEEEEeCCC-------CeEEEEEecCCccEEEEEEeeCCCeEEEEE-------cCCeEEEe
Q 002881 237 FHPE-LPIIITGS-EDGTVRIWHATT-------YRLENTLNYGLERVWAIGYMKSSRRIVIGY-------DEGTIMVK 298 (871)
Q Consensus 237 ~~p~-~~~l~~~~-~dg~v~iwd~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~-------~dg~i~i~ 298 (871)
++|+ +..+++++ .|++|.+||+.+ ++.+.++..+.+.+..+.++|+++.|.+++ .+++|.+|
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence 5777 56666665 579999999988 889999998888889999999999999987 25677776
No 130
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.1e-25 Score=237.88 Aligned_cols=232 Identities=12% Similarity=0.124 Sum_probs=186.8
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCC---------CCceeEEee-ecCCCEEEEEEeC--CCCEEEEEeCCCeEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQ---------SQTMAKSFE-VTELPVRSAKFVA--RKQWVVAGADDMFIRV 83 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 83 (871)
..|.++.|+|+ +++++.|++|++|+.. +++.+..+. .|..+|.+++|+| +++++++|+.||.|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45667778887 8999999999999655 555455544 5678999999999 9999999999999999
Q ss_pred EECCCCcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeec-CCcceEEEEEecCCCCEEEEE
Q 002881 84 YNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 84 w~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~ 161 (871)
||+.+++...... .|...|++++|+|++.+|++|+.||.|++||++++......+.. |..+|.+++|+| ++.+|+++
T Consensus 154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~ 232 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVE 232 (343)
T ss_dssp EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEE
T ss_pred EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEE
Confidence 9999999877764 45568999999999999999999999999999998555356666 999999999999 88999999
Q ss_pred ECCCcEEEEECCCCCCeEEEec---CCCCee--EEEEeecCCcCEEEEEeC-CCeEEEEECCCCceEEEecCcccCeEEE
Q 002881 162 SLDRTIKIWNLGSPDPNFTLDA---HQKGVN--CVDYFTGGDKPYLITGSD-DHTAKVWDYQTKSCVQTLEGHTHNVSAV 235 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~---~~~~i~--~i~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~v~~i 235 (871)
+ ++.|++||+++.+....+.. +...+. +++|+|++. ++++++. ++.+++|++.+....... .++..+
T Consensus 233 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~ 305 (343)
T 3lrv_A 233 C-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK--NMIAYSNESNSLTIYKFDKKTKNWTK----DEESAL 305 (343)
T ss_dssp E-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS--EEEEEETTTTEEEEEEECTTTCSEEE----EEEEEC
T ss_pred e-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC--EEEEecCCCCcEEEEEEcccccceEe----cCceeE
Confidence 9 55999999998876544332 333443 699999887 8999888 999999999765543333 567788
Q ss_pred EEcC---CCCEEEEEECCCcEEEEeC
Q 002881 236 CFHP---ELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 236 ~~~p---~~~~l~~~~~dg~v~iwd~ 258 (871)
+|+| +...+++++.||.+.++-.
T Consensus 306 ~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 306 CLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp CC----CCCCEEEEEEETTEEEEEEE
T ss_pred ecCccccccceeEEEecCCceEEEEe
Confidence 8998 8889999999999998853
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=6.9e-24 Score=251.70 Aligned_cols=276 Identities=9% Similarity=0.046 Sum_probs=215.9
Q ss_pred CCCEEEEEEcCCCCEEEEEEc-CC-----eEEEEeCCCCceeEEeeecCC------------------------CEEEEE
Q 002881 15 SERVKSVDLHPSEPWILASLY-SG-----TVCIWNYQSQTMAKSFEVTEL------------------------PVRSAK 64 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~-dg-----~v~iwd~~~~~~~~~~~~~~~------------------------~v~~~~ 64 (871)
...+.+++|||||++|++++. +| .|.+||..+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557999999999999999998 88 899999999988777765433 278999
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCC
Q 002881 65 FVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS 142 (871)
Q Consensus 65 ~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 142 (871)
|||||++|++++. +.|.+||+.++. ....+..|...+.+++|||+|++|++++. +.|.+||+.++ ........+.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g-~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG-RQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT-EEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC-CEEEeccCCc
Confidence 9999999999987 999999999873 44556678888999999999999998875 59999999987 4444443333
Q ss_pred cc----------------eEEEEEecCCCCEEEEEECCC---------------------------------cEEEEECC
Q 002881 143 HY----------------VMQVTFNPKDTNTFASASLDR---------------------------------TIKIWNLG 173 (871)
Q Consensus 143 ~~----------------v~~~~~~p~~~~~l~~~~~dg---------------------------------~i~i~d~~ 173 (871)
.. +.++.|+| +++.|++++.|+ .|.+||+.
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred cceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 32 47799999 788888887665 78899998
Q ss_pred C-CCCeEEEe--cCCCCeeEEEEeecCCcCEEEEEeC-----CCeEEEEECCCCceEEEecCccc----CeEEEEEcCCC
Q 002881 174 S-PDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSD-----DHTAKVWDYQTKSCVQTLEGHTH----NVSAVCFHPEL 241 (871)
Q Consensus 174 ~-~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~----~v~~i~~~p~~ 241 (871)
+ ++...... .+...+..++| |+++ .|++++. +..|++||+.+++....+..+.. .+..++|+|+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~--~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQ--HLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETT--EEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCC--EEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 8 76544332 36677899999 9998 5665543 56899999999988776665443 45688999999
Q ss_pred CEEEEEECCCcEEEEeCC-CCeEEEEEecCCccEEEE-EEeeCCCeEEEEEc-CC--eEEEe
Q 002881 242 PIIITGSEDGTVRIWHAT-TYRLENTLNYGLERVWAI-GYMKSSRRIVIGYD-EG--TIMVK 298 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~i~~i-~~~~~~~~l~~g~~-dg--~i~i~ 298 (871)
+++++++.||.+++|.+. ++. ...+..+...+.++ .|+|+++.|++.+. ++ .+.+|
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence 999999999987777654 345 66777776778887 59999998866544 44 56665
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=4.9e-24 Score=232.73 Aligned_cols=268 Identities=12% Similarity=0.061 Sum_probs=212.9
Q ss_pred CCEEEEEEcCCCC-EEEEEE----cCC----eEEEEeC--CCCcee--EEeeecCCCEEEEEEeC--------------C
Q 002881 16 ERVKSVDLHPSEP-WILASL----YSG----TVCIWNY--QSQTMA--KSFEVTELPVRSAKFVA--------------R 68 (871)
Q Consensus 16 ~~v~~i~~s~~~~-~la~~~----~dg----~v~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~--------------~ 68 (871)
..+...+|++.|. .+++|+ .+| .|++||+ .+++.+ ..+.+|...++.+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677888989886 555765 367 8999999 888877 45788888888877765 2
Q ss_pred CCEEEEEeCC------CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCceEEEEee
Q 002881 69 KQWVVAGADD------MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM---LIKLWDWEKGWMCTQIFE 139 (871)
Q Consensus 69 ~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~ 139 (871)
+..++.++.+ +.|++||+.. .....+..|...+.+++|+|+|++|++++.++ .|++||++++. .. .+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-~~-~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VR-QVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EE-EEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-EE-Eee
Confidence 6677766654 7999999974 45677778999999999999999999999875 99999999873 33 456
Q ss_pred cCCcceEEEEEecCCCCEEE-EEECCCc--EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC-CC--eEEE
Q 002881 140 GHSHYVMQVTFNPKDTNTFA-SASLDRT--IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DH--TAKV 213 (871)
Q Consensus 140 ~~~~~v~~~~~~p~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~-dg--~i~v 213 (871)
.|...+.+++|+| +++.|+ +++.++. |.+||+.+++. ..+..+...+.+++|+|+++ .|++++. ++ .|++
T Consensus 220 ~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~--~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 220 SFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ--NLAFTSDQAGRPQVYK 295 (415)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS--EEEEEECTTSSCEEEE
T ss_pred cCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC--EEEEEECCCCCcEEEE
Confidence 6788899999999 677666 6666655 99999988764 56667888899999999987 5777765 44 7888
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 214 ~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
||+.+++. ..+..+...+.+++|+|+|++|++++.+ +.|++||+.+++.. .+..+ ..+.+++|+|+|+.|++++
T Consensus 296 ~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 296 VNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-FLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp EETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-SSCEEEEECTTSSEEEEEE
T ss_pred EECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC-CCcCCeEEcCCCCEEEEEE
Confidence 89987764 4455566788999999999999988764 58999999988764 44444 3789999999999999887
Q ss_pred cCC
Q 002881 291 DEG 293 (871)
Q Consensus 291 ~dg 293 (871)
.++
T Consensus 373 ~~~ 375 (415)
T 2hqs_A 373 SQG 375 (415)
T ss_dssp EET
T ss_pred cCC
Confidence 765
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.3e-23 Score=229.46 Aligned_cols=263 Identities=11% Similarity=0.050 Sum_probs=208.6
Q ss_pred hcccCCCCEEEEEEcC--------------CCCEEEEEEcC------CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCC
Q 002881 10 KLAQRSERVKSVDLHP--------------SEPWILASLYS------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK 69 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~--------------~~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 69 (871)
.+.+|...+..+++++ .+..++.++.+ +.|++||... ...+.+..|...+.+++|+|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC
Confidence 3556666666666654 25667766654 7999999874 4567778899999999999999
Q ss_pred CEEEEEeCCC---eEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEE-EEECCCe--EEEEECCCCceEEEEeecCCc
Q 002881 70 QWVVAGADDM---FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVL-SSSDDML--IKLWDWEKGWMCTQIFEGHSH 143 (871)
Q Consensus 70 ~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~ 143 (871)
++|++++.++ .|++||+.+++.. .+..|...+.+++|+|+|++|+ +++.++. |++||+.++ .. ..+..|..
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~-~~l~~~~~ 267 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI-RQVTDGRS 267 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CE-EECCCCSS
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CE-EeCcCCCC
Confidence 9999999875 9999999998775 4666888999999999999888 5665554 999999887 33 45667888
Q ss_pred ceEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC---CeEEEEECC
Q 002881 144 YVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQ 217 (871)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d---g~i~v~d~~ 217 (871)
.+.+++|+| +++.|++++. ++ .|.+||+.+++. ..+..+...+.+++|+|+++ +|++++.+ +.|++||+.
T Consensus 268 ~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~--~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 268 NNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK--FMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp CEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS--EEEEEEECSSCEEEEEEETT
T ss_pred cccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC--EEEEEECcCCceEEEEEECC
Confidence 899999999 7888887775 45 677889887763 44455667888999999988 67766653 589999999
Q ss_pred CCceEEEecCcccCeEEEEEcCCCCEEEEEECCC---cEEEEeCCCCeEEEEEecCCccEEEEEEeeCC
Q 002881 218 TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (871)
Q Consensus 218 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 283 (871)
+++.. .+..+. .+.+++|+|+|+.|++++.++ .|++||+. ++....+..+.+.|.+++|+|..
T Consensus 344 ~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 344 TGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred CCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 88764 455454 899999999999999988777 79999986 55667788888999999999964
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=8e-23 Score=229.95 Aligned_cols=281 Identities=13% Similarity=0.162 Sum_probs=224.0
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeC--CCCceeEEeeecCCCEEEEEEeC----CCCEEEEEeC-CCeEEEEECCCCc
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNY--QSQTMAKSFEVTELPVRSAKFVA----RKQWVVAGAD-DMFIRVYNYNTMD 90 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~iw~~~~~~ 90 (871)
+.+++|+|||++|++++.++.|.+||+ .+++.+.++.. ...+..++|+| +|+++++++. +++|.+||..+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 899999999999999999999999999 88888888874 45679999999 9999999985 8999999999999
Q ss_pred EEEEEcc----------CC-CCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 91 KVKVFEA----------HT-DYIRCVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 91 ~~~~~~~----------~~-~~i~~i~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
.+..+.. |. ..+..+.++|+++.+ ++...++.|.+||..+...+......+...+..+.|+| +++++
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l 338 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYF 338 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEE
Confidence 9888764 22 378999999987654 55667899999999875433322223556688899999 67766
Q ss_pred EEE-ECCCcEEEEECCCCCCeEEEec----CCCCeeEEEEeecCCcCEEEEEe-CCCeEEEEECCC-------CceEEEe
Q 002881 159 ASA-SLDRTIKIWNLGSPDPNFTLDA----HQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQT-------KSCVQTL 225 (871)
Q Consensus 159 ~~~-~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~~-------~~~~~~~ 225 (871)
+++ ..+++|.+||+.+++....+.. |.+....+ ++|++. .+++++. .+++|.+||+.+ .++++++
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g-~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYG-PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCc-cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE
Confidence 554 4689999999999987777764 43333332 355533 3667765 689999999998 8899999
Q ss_pred cCcccCeEEEEEcCCCCEEEEEE-------CCCcEEEEeCCCCeEE-EEE--------ecCCccEEEEEEeeCCCeEEEE
Q 002881 226 EGHTHNVSAVCFHPELPIIITGS-------EDGTVRIWHATTYRLE-NTL--------NYGLERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 226 ~~~~~~v~~i~~~p~~~~l~~~~-------~dg~v~iwd~~~~~~~-~~~--------~~~~~~i~~i~~~~~~~~l~~g 289 (871)
.+|...+..+.++|++++|++++ .+++|.+||+.+++.. ..+ ..+..+++.+.|+|+|+.+.++
T Consensus 417 ~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 417 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 99988889999999999999987 2679999999998866 444 3445789999999999999987
Q ss_pred E-----cCCeEEEecCCC
Q 002881 290 Y-----DEGTIMVKIGRE 302 (871)
Q Consensus 290 ~-----~dg~i~i~~~~~ 302 (871)
. .++.|.+|....
T Consensus 497 ~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp EECCTTSCCEEEEEETTT
T ss_pred eecCCCCCCeEEEEECCC
Confidence 4 368888875443
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=7.6e-22 Score=211.44 Aligned_cols=273 Identities=10% Similarity=0.054 Sum_probs=221.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEEc-------CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Q 002881 14 RSERVKSVDLHPSEPWILASLY-------SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYN 85 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~-------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~ 85 (871)
....+..++|+|+++++++++. ++.|.+||..+++.+..+... ..+..++|+|+|+++++++ .++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456889999999999988874 568999999999988888754 4578899999999766554 479999999
Q ss_pred CCCCcEEEEEccCCCC---------eEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002881 86 YNTMDKVKVFEAHTDY---------IRCVAVHPTLPYVLSSS--DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (871)
Q Consensus 86 ~~~~~~~~~~~~~~~~---------i~~i~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (871)
..+++.+..+..+... +.+++|+|+++++++++ .++.|.+||..++ .....+..+...+.++.|+| +
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~-d 195 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLALDS-E 195 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEEET-T
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEECC-C
Confidence 9999988888754432 78999999999888776 4789999999988 55555554555688899999 7
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeEEEec----CCCCeeEEEEeecCCcCEEEEEe-CCCeEEEEECCCCceEEEecCcc
Q 002881 155 TNTFASASLDRTIKIWNLGSPDPNFTLDA----HQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~ 229 (871)
++.+++++.++.|.+||+.+++....+.. +...+..++|+|+++ ++++++ .++.|.+||..+++.+..+....
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--RAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--EEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--EEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 88899999999999999998887766654 445677899999987 455544 55999999999999887776443
Q ss_pred cCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCe
Q 002881 230 HNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
...++|+|+++.+++++ .++.|.+||..+++.+..+... ..+.+++|+|+|+.|+++..++.
T Consensus 274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCC
T ss_pred --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcccc
Confidence 25799999999666555 6899999999999988888765 57899999999998888877654
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=6.2e-23 Score=242.88 Aligned_cols=276 Identities=12% Similarity=0.124 Sum_probs=205.2
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCC---CEEEEEEeCCCCEEEEEeCC---------CeEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL---PVRSAKFVARKQWVVAGADD---------MFIRV 83 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~i 83 (871)
..+.+++|+|||+++++ +.||+|++||..+++....+..|.. .|.+++|||||++|++++.+ +.|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34788999999997766 6799999999999988877776654 49999999999999999774 78999
Q ss_pred EECCCCcEEEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcce---------------
Q 002881 84 YNYNTMDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV--------------- 145 (871)
Q Consensus 84 w~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--------------- 145 (871)
||+.+++. ..+. .|...+..++|||+|+.|++++. +.|++||+.++ ........+...+
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCceECcccceeEEEEec
Confidence 99998876 3333 34455889999999999999886 79999999987 4444444433323
Q ss_pred ---EEEEEecCCCCEEEEEECCC----------------------------------cEEEEECCCCCCeEEEecC----
Q 002881 146 ---MQVTFNPKDTNTFASASLDR----------------------------------TIKIWNLGSPDPNFTLDAH---- 184 (871)
Q Consensus 146 ---~~~~~~p~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~---- 184 (871)
.++.|+| +++.|++++.++ .|.+||+.+++....+..+
T Consensus 173 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 173 KTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred cCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 7899999 888888887553 7999999888765555543
Q ss_pred --CCCeeEEEEeecCCcCEEEEEeC----CCeEEEEECCCCceEEEecCc-ccCe----EEEEEcCCCCEEEE--EECCC
Q 002881 185 --QKGVNCVDYFTGGDKPYLITGSD----DHTAKVWDYQTKSCVQTLEGH-THNV----SAVCFHPELPIIIT--GSEDG 251 (871)
Q Consensus 185 --~~~i~~i~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~-~~~v----~~i~~~p~~~~l~~--~~~dg 251 (871)
...+..++|+|+++ ++++... +..|++||+.+++....+..+ ...+ ..++|+|+|+.|+. +..++
T Consensus 252 ~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 252 MREYYITMVKWATSTK--VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp GSSEEEEEEEESSSSE--EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred CccceeEEEEEeCCCe--EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 56788999999987 5655543 357999999998876655432 3333 37899999996664 45666
Q ss_pred ------cEEEEe-CCCCeE--EEEEecCCccEEE-EEEeeCCCeEEEEEcC---CeEEEe
Q 002881 252 ------TVRIWH-ATTYRL--ENTLNYGLERVWA-IGYMKSSRRIVIGYDE---GTIMVK 298 (871)
Q Consensus 252 ------~v~iwd-~~~~~~--~~~~~~~~~~i~~-i~~~~~~~~l~~g~~d---g~i~i~ 298 (871)
.|.+|| ..++.. ...+..+...+.. ++|+|+|+.|+..+.+ +.+.+|
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 577787 344431 3444433344554 6999999999876655 555554
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=5.8e-22 Score=235.16 Aligned_cols=316 Identities=9% Similarity=0.010 Sum_probs=226.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-CC-----eEEEEECCCCcEEEEEccCCC------------------------CeEEEE
Q 002881 57 ELPVRSAKFVARKQWVVAGAD-DM-----FIRVYNYNTMDKVKVFEAHTD------------------------YIRCVA 106 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~------------------------~i~~i~ 106 (871)
...+.+++|+|||++|++++. |+ .|.+||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 999999999988777765433 378999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCC
Q 002881 107 VHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (871)
Q Consensus 107 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 185 (871)
|||||++|++++. +.|.+||+.++. .....+..|...+.+++|+| +++.+++++ ++.|.+||+.+++.......+.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999887 899999998761 02234556778899999999 888888887 5699999998876543333332
Q ss_pred CC----------------eeEEEEeecCCcCEEEEEeCCC---------------------------------eEEEEEC
Q 002881 186 KG----------------VNCVDYFTGGDKPYLITGSDDH---------------------------------TAKVWDY 216 (871)
Q Consensus 186 ~~----------------i~~i~~~~~~~~~~l~~~~~dg---------------------------------~i~v~d~ 216 (871)
.. +..+.|+|+++ .|++++.++ .|++||+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~--~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDS--AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSS--CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred cceeccccceeeeeccccccceEECCCCC--EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 22 47799999998 577776554 8899999
Q ss_pred CC-CceEEEec--CcccCeEEEEEcCCCCEEEEEEC-----CCcEEEEeCCCCeEEEEEecCCc----cEEEEEEeeCCC
Q 002881 217 QT-KSCVQTLE--GHTHNVSAVCFHPELPIIITGSE-----DGTVRIWHATTYRLENTLNYGLE----RVWAIGYMKSSR 284 (871)
Q Consensus 217 ~~-~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~----~i~~i~~~~~~~ 284 (871)
.+ ++...... .+...+..++| |+|+.|++++. ++.|++||+.+++....+..+.. .+.+++|+|||+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~ 349 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS 349 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence 88 77654433 36778999999 99999987764 56799999999987766655432 446899999999
Q ss_pred eEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceE-EECC
Q 002881 285 RIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSL-KHNP 363 (871)
Q Consensus 285 ~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~ 363 (871)
.+++++.+|...+|. ++.++. . ..+......+..+ .|+|
T Consensus 350 ~~~~~~~~g~~~l~~--------~~~~~~-~-------------------------------~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 350 ILWSSERTGFQHLYR--------IDSKGK-A-------------------------------AALTHGNWSVDELLAVDE 389 (741)
T ss_dssp EEEEECTTSSCEEEE--------ECSSSC-E-------------------------------EESCCSSSCEEEEEEEET
T ss_pred EEEEecCCCccEEEE--------EcCCCC-e-------------------------------eeeeecceEEEeEeEEeC
Confidence 888888888777762 111111 0 0011112223344 6999
Q ss_pred CCCEEEEEc--CC--cEEEEEeecc-c----ccCcCceeEEEEecCCcEEEEec-C----CeEEEeecc
Q 002881 364 NGRFVVVCG--DG--EYIIYTALAW-R----NRSFGSALEFVWSSDGEYAVRES-S----SKIKIFSKN 418 (871)
Q Consensus 364 ~g~~lav~~--~~--~~~i~~~~~~-~----~~~~~~~~~~~~s~~~~~~~~~~-~----~~i~i~~~~ 418 (871)
+|+.|++.+ ++ .+.+|..... . ......+..+.|+|+|++++... + ..+.+++..
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 999876554 33 7888876531 1 11123456788888888766543 1 356666543
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=4.3e-21 Score=203.53 Aligned_cols=276 Identities=7% Similarity=0.064 Sum_probs=204.3
Q ss_pred EEEcCCCCE-EEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcE-EEEEcc
Q 002881 21 VDLHPSEPW-ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDK-VKVFEA 97 (871)
Q Consensus 21 i~~s~~~~~-la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~ 97 (871)
..|++++.+ +++.+.++.|.+||..+++....+..+..++ +++|+|+|+++++++. ++.|.+||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 346666666 4556668999999999999988888776667 9999999997777766 88999999999887 777776
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC---eEEEEECCCCceEEEEeecCCcceEEEEEecCCCC-EEEEEECCCc-EEEEEC
Q 002881 98 HTDYIRCVAVHPTLPYVLSSSDDM---LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASASLDRT-IKIWNL 172 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~-i~i~d~ 172 (871)
+..+..+++|+|++++++++..++ .|.+||+.++ .....+..+ ....+++|+| +++ ++++...++. |.+|++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-KFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-EEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC-CeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEEEEE
Confidence 766666699999999999655553 8999999988 444454443 4468999999 555 5566666688 999999
Q ss_pred CCCCCeE----EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce---EEEecCcccCeEEEEEcCCCCEEE
Q 002881 173 GSPDPNF----TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC---VQTLEGHTHNVSAVCFHPELPIII 245 (871)
Q Consensus 173 ~~~~~~~----~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~~i~~~p~~~~l~ 245 (871)
....... ........+..+.|+|+++. +++++..++.|.+||+.+++. +..+.. ...+..++|+|+|++++
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~-l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNF-AFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSE-EEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEE
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCE-EEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEE
Confidence 7654432 22234456789999999873 344555689999999998887 777764 35678899999999776
Q ss_pred EEE-CCCcEEEEeCCCCeE--EEEEecC----Ccc---EEEEEEeeCCCeEEEEEc-CCeEEEecCCC
Q 002881 246 TGS-EDGTVRIWHATTYRL--ENTLNYG----LER---VWAIGYMKSSRRIVIGYD-EGTIMVKIGRE 302 (871)
Q Consensus 246 ~~~-~dg~v~iwd~~~~~~--~~~~~~~----~~~---i~~i~~~~~~~~l~~g~~-dg~i~i~~~~~ 302 (871)
+++ .++.|.+||..+++. +..+... ... ...++|+|+++.|++++. ++.+.+|....
T Consensus 237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 654 577899999999886 4333322 122 245899999999877655 56888875443
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=2.5e-22 Score=209.08 Aligned_cols=252 Identities=12% Similarity=0.082 Sum_probs=196.2
Q ss_pred EcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEccC-CCCeEEEEEcCCC
Q 002881 34 LYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-MDKVKVFEAH-TDYIRCVAVHPTL 111 (871)
Q Consensus 34 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-~~~i~~i~~~~~~ 111 (871)
+.++.|++||..+++... +..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......| ...+.+++|+|++
T Consensus 19 ~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 458899999999887664 555888999999999999999987 78999999998 8777666555 4678999999999
Q ss_pred CEEEEEEC--CC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE-EEECCCcEEEEECCC-CCCeEEEecCC
Q 002881 112 PYVLSSSD--DM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLDRTIKIWNLGS-PDPNFTLDAHQ 185 (871)
Q Consensus 112 ~~l~~~~~--dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~ 185 (871)
++|++++. ++ .|..|+..++ . ...+..+ ..+..++|+| +++.++ +++.++.+.+|+++. ......+..+.
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGG-T-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCC-C-CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CEEEEEEeCCCCcceEEEEECCCC-c-eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 99999983 34 4444555554 2 3333333 3488999999 666655 788899999998642 23345566677
Q ss_pred CCeeEEEEeecCCcCEEEEEe-CCCeEEEEECC-CCceEEEecCcccCeEEEEEcCCCCEEEEEECC-----------Cc
Q 002881 186 KGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQ-TKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-----------GT 252 (871)
Q Consensus 186 ~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~-~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d-----------g~ 252 (871)
..+.++.|+|+++ ++++++ .++.+.+|++. .+..+..+..+...+..++|+|++++|++++.+ +.
T Consensus 173 ~~~~~~~~s~dg~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 173 GRNDGPDYSPDGR--WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CccccceECCCCC--EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 8899999999887 566555 58899999886 456677777788889999999999999888766 56
Q ss_pred EEEEeCCCCeE--EEEEecCCccEEEEEEeeCCCeEEEEEcCC
Q 002881 253 VRIWHATTYRL--ENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 253 v~iwd~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg 293 (871)
|++||+.+++. +..+..+...+.+++|+|+++.|++++.+.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999988765 334446667889999999999999887654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=4.4e-21 Score=226.11 Aligned_cols=263 Identities=14% Similarity=0.096 Sum_probs=192.6
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCcee-EEeeecC-----------------CCEEEEEEeCCCCEEEEEeCCC
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-KSFEVTE-----------------LPVRSAKFVARKQWVVAGADDM 79 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg 79 (871)
+..+.|+ |..+++++.+| | +||..+++.+ ..+..+. ..|.+++|+|| ..++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 5557888 66677777777 8 9999999873 3333332 56999999999 6666664 59
Q ss_pred eEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-----CceEEEEeecCCcc----------
Q 002881 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK-----GWMCTQIFEGHSHY---------- 144 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~---------- 144 (871)
.|++||+.+++... +..+...+.+++|+|+|++|+++ .++.|.+||+.+ + ........+...
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g-~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS-RAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC-CCEESCSCCBTTEEESSCCGGG
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC-CcEEeccCCCCCeEcccchhhh
Confidence 99999999876544 44466778999999999999985 679999999988 6 344433333332
Q ss_pred ----eEEEEEecCCCCEEEEEE---------------------------------CCCcEEEEECCCCCCeEEEe--cCC
Q 002881 145 ----VMQVTFNPKDTNTFASAS---------------------------------LDRTIKIWNLGSPDPNFTLD--AHQ 185 (871)
Q Consensus 145 ----v~~~~~~p~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~--~~~ 185 (871)
+.++.|+| +++.|++++ .+..|.+||+.+++...... .+.
T Consensus 179 e~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 179 EFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp CTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 47899999 888888887 44679999998876433322 355
Q ss_pred CCeeEEEEeecCCcCEEEEEeCCC-----eEEEEECCCCceEEEec-C-ccc---CeEEEEEcC--CCCEEEEEECCCcE
Q 002881 186 KGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLE-G-HTH---NVSAVCFHP--ELPIIITGSEDGTV 253 (871)
Q Consensus 186 ~~i~~i~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~-~-~~~---~v~~i~~~p--~~~~l~~~~~dg~v 253 (871)
..+.+++|+|+++ .+++++.++ .|++||+.+++....+. . +.. .+.++.|+| +|+++++++.||.+
T Consensus 258 ~~~~~~~~spdg~--~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 258 KFLTNLSWSPDEN--ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp CEEEEEEECTTSS--EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred eeEeeEEEECCCC--EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 6789999999988 677777665 89999999884433332 1 221 246789999 99999999999999
Q ss_pred EEEeCC-CCeEEEEEecCCccEEE-EEEeeCCCeEEEEEcC
Q 002881 254 RIWHAT-TYRLENTLNYGLERVWA-IGYMKSSRRIVIGYDE 292 (871)
Q Consensus 254 ~iwd~~-~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~g~~d 292 (871)
++|.+. ++.....+..+...+.+ ++|+|+++.|++++.+
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 999875 56777777777667776 7999999988776654
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.4e-20 Score=198.83 Aligned_cols=265 Identities=12% Similarity=0.157 Sum_probs=190.4
Q ss_pred CCEEEEE-EcCCeEEEEeCC-CCc--eeEEeeecCCCEEEEEEeCCCCEEEEEeCC-CeEEEEECC--CCc--EEEEEcc
Q 002881 27 EPWILAS-LYSGTVCIWNYQ-SQT--MAKSFEVTELPVRSAKFVARKQWVVAGADD-MFIRVYNYN--TMD--KVKVFEA 97 (871)
Q Consensus 27 ~~~la~~-~~dg~v~iwd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~ 97 (871)
+++++++ +.++.|.+|++. +++ ....+ .+...+.+++|+|+|++|++++.+ +.|.+|+++ +++ .+..+..
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 3445555 669999999985 342 23333 467789999999999999998886 999999997 554 3344544
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCc--eEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEEEECC
Q 002881 98 HTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLG 173 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~ 173 (871)
+. .+..++|+|++++|++++. ++.|.+||+..+. .....+..+ ..+.+++|+| +++.+++++ .++.|.+||+.
T Consensus 83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEec
Confidence 44 7899999999998877765 8899999995321 233333333 4588999999 677777776 89999999998
Q ss_pred C-CCCeE----EEec-CCCCeeEEEEeecCCcCEEE-EEeCCCeEEEEECCC--Cce--EEEec---Cc---ccCeEEEE
Q 002881 174 S-PDPNF----TLDA-HQKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQT--KSC--VQTLE---GH---THNVSAVC 236 (871)
Q Consensus 174 ~-~~~~~----~~~~-~~~~i~~i~~~~~~~~~~l~-~~~~dg~i~v~d~~~--~~~--~~~~~---~~---~~~v~~i~ 236 (871)
+ ++... .... ....+..++|+|+++ +++ ++..++.|.+|++.. +.. ...+. .. ...+..++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~--~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ--YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSS--EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCC--EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence 7 44322 2222 345778899999887 454 445789999999953 332 22222 11 23567899
Q ss_pred EcCCCCEEEEE-ECCCcEEEEeCC--C--CeEEEEEecCCccEEEEEEeeCCCeEEEEE-cCCeEEEe
Q 002881 237 FHPELPIIITG-SEDGTVRIWHAT--T--YRLENTLNYGLERVWAIGYMKSSRRIVIGY-DEGTIMVK 298 (871)
Q Consensus 237 ~~p~~~~l~~~-~~dg~v~iwd~~--~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~-~dg~i~i~ 298 (871)
|+|++++++++ +.++.|.+|++. + .+.+..+..+. .+.+++|+|+++.|++++ .++.+.+|
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEE
Confidence 99999877754 478999999988 3 34455555553 488999999999998887 57888886
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=2.2e-20 Score=220.23 Aligned_cols=274 Identities=9% Similarity=0.088 Sum_probs=208.6
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----Cc
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-----MD 90 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~ 90 (871)
..|.+++|||| ..++.+. ++.|.+||+.+++... +..+...+.+++|+|||++|+++ .++.|++|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6676664 6999999998886654 44466778999999999999995 679999999998 77
Q ss_pred EEEEEccCCCC--------------eEEEEEcCCCCEEEEEE---------------------------------CCCeE
Q 002881 91 KVKVFEAHTDY--------------IRCVAVHPTLPYVLSSS---------------------------------DDMLI 123 (871)
Q Consensus 91 ~~~~~~~~~~~--------------i~~i~~~~~~~~l~~~~---------------------------------~dg~i 123 (871)
.......+... +.++.|+|||++|++++ .++.|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 65544433332 48899999999999987 44689
Q ss_pred EEEECCCCceEEEEee--cCCcceEEEEEecCCCCEEEEEECCC-----cEEEEECCCCCCeEEEe--cCCC---CeeEE
Q 002881 124 KLWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDR-----TIKIWNLGSPDPNFTLD--AHQK---GVNCV 191 (871)
Q Consensus 124 ~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~---~i~~i 191 (871)
.+||+.++ ....... .|...+.+++|+| +++.+++++.++ .|.+||+.+++....+. .+.. .+..+
T Consensus 238 ~~~d~~~~-~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 238 GIYHLATG-KTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEETTTT-EEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEECCCC-ceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 99999987 3333332 4667899999999 888888887776 89999998884333332 1221 24678
Q ss_pred EEee--cCCcCEEEEEeCCCeEEEEECC-CCceEEEecCcccCeEE-EEEcCCCCEEEEEECC-C----cEEEEeCCCCe
Q 002881 192 DYFT--GGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTHNVSA-VCFHPELPIIITGSED-G----TVRIWHATTYR 262 (871)
Q Consensus 192 ~~~~--~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~-i~~~p~~~~l~~~~~d-g----~v~iwd~~~~~ 262 (871)
.|+| +++ +++++..+|.+.+|.+. ++..+..+..+...+.. ++|+|+++.|+.++.+ + .|..||..+++
T Consensus 316 ~~sp~~dg~--~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 316 TFLPGSNNQ--FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EECTTCSSE--EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eeecCCCCE--EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 9999 776 78888889989998876 56777788777777877 7999999987766544 3 67777877765
Q ss_pred EEEEEecCCccEEEEEEeeCCCeEEEEEcC----CeEEEec
Q 002881 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDE----GTIMVKI 299 (871)
Q Consensus 263 ~~~~~~~~~~~i~~i~~~~~~~~l~~g~~d----g~i~i~~ 299 (871)
...+. +...+.+++|+|+|+.+++++.+ +.+.+|.
T Consensus 394 -~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 394 -TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp -CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred -ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 33333 44678999999999999887554 3466653
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3.2e-20 Score=197.81 Aligned_cols=265 Identities=12% Similarity=0.109 Sum_probs=189.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcC-CeEEEEeCC--CCce--eEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEC
Q 002881 13 QRSERVKSVDLHPSEPWILASLYS-GTVCIWNYQ--SQTM--AKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNY 86 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~d-g~v~iwd~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~ 86 (871)
.|...+.+++|+|+|++|++++.+ +.|.+|++. +++. +..+..+. .+..++|+|++++|++++. ++.|.+|++
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 467789999999999999998876 999999987 5553 33444333 7899999999998877765 889999999
Q ss_pred C---CCcEEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEE----Eee-cCCcceEEEEEecCCCCE
Q 002881 87 N---TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQ----IFE-GHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 87 ~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~----~~~-~~~~~v~~~~~~p~~~~~ 157 (871)
. +.+....+..+ ..+.+++|+|+++++++++ .++.|.+||+.+...... ... .....+..++|+| +++.
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~ 191 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQY 191 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSE
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCE
Confidence 4 33444455443 4588999999999988887 899999999987223322 122 2345688999999 6765
Q ss_pred EEE-EECCCcEEEEECCC--CCC--eEEEecC------CCCeeEEEEeecCCcCEEE-EEeCCCeEEEEECC--CC--ce
Q 002881 158 FAS-ASLDRTIKIWNLGS--PDP--NFTLDAH------QKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQ--TK--SC 221 (871)
Q Consensus 158 l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~------~~~i~~i~~~~~~~~~~l~-~~~~dg~i~v~d~~--~~--~~ 221 (871)
+++ +..++.|.+|++.. ++. ....... ...+..++|+|+++ +++ ++..++.|.+||+. ++ +.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~--~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR--HLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC--EEEEEecCCCEEEEEEEcCCCCceEE
Confidence 554 44889999999954 332 2222211 23456799999887 455 55578999999998 32 34
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEE-CCCcEEEE--eCCCCeE--EEEEecCCccEEEEEEeeCCC
Q 002881 222 VQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIW--HATTYRL--ENTLNYGLERVWAIGYMKSSR 284 (871)
Q Consensus 222 ~~~~~~~~~~v~~i~~~p~~~~l~~~~-~dg~v~iw--d~~~~~~--~~~~~~~~~~i~~i~~~~~~~ 284 (871)
+..+..+.. +.+++|+|++++|++++ .++.|.+| |..+++. +..+... ....+++|.|+.+
T Consensus 270 ~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 270 EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence 445554444 88999999999888887 67999999 5556653 3344432 4566777777544
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.9e-20 Score=197.55 Aligned_cols=262 Identities=8% Similarity=0.021 Sum_probs=201.6
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeecCC--CEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCcEEEEEcc-C----C
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTEL--PVRSAKFVARKQWVVA-GADDMFIRVYNYNTMDKVKVFEA-H----T 99 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~-~----~ 99 (871)
+++++++.++.|.+||..+++.+..+..... .+..++|+|+|+.+++ ++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788899999999999999998887774332 5889999999987755 45578999999999988877653 2 1
Q ss_pred CCeEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 100 DYIRCVAVHPTLPYVLSSS------------DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 100 ~~i~~i~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
..+.+++|+|++++|++++ .++.|.+||+.++ .....+.. ...+.+++|+| +++.++++ ++.|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-cEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeE
Confidence 2577899999999999886 5799999999887 44444443 34577889999 67777776 6899
Q ss_pred EEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe-CCC-----------------------eEEEEECCCCceE-
Q 002881 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-DDH-----------------------TAKVWDYQTKSCV- 222 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~-~dg-----------------------~i~v~d~~~~~~~- 222 (871)
.+||+.+++....+..+... ..+.|+|++.. +++.+ .++ .|.+||+.+++..
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 233 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWE-AETYAQPDVLA--VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233 (337)
T ss_dssp EEEETTTTEEEEEECSTTTT-TTTBCCCBCCC--CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred EEEECCCCcEeeeeeccccC-CCceeCCCccE--EeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence 99999988776666544311 12367887763 33222 222 4789999988764
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecC
Q 002881 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (871)
Q Consensus 223 ~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~ 300 (871)
..+..+...+.+++|+|++++++++ ++.|.+||+.+++....+..+ ..+.+++|+|+++.|++++.++.+.+|..
T Consensus 234 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 2334455678899999999999888 689999999999988877655 56789999999999999998999988743
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=5.1e-21 Score=199.15 Aligned_cols=236 Identities=10% Similarity=0.012 Sum_probs=183.3
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCC-CceeEEeeec-CCCEEEEEEeCCCCEEEEEeC--CC--eEEE
Q 002881 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEVT-ELPVRSAKFVARKQWVVAGAD--DM--FIRV 83 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--dg--~i~i 83 (871)
.+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|++++|++++. ++ .|..
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4566889999999999999999986 88999999998 8777666555 367899999999999999983 34 4555
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
|+..++. ...+..+. .+.+++|+|++++|+ +++.++.+.+|+++........+..+...+.++.|+| +++.+++++
T Consensus 115 ~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~ 191 (297)
T 2ojh_A 115 LPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWIYFNS 191 (297)
T ss_dssp EETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred EECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC-CCCEEEEEe
Confidence 5555544 34444333 489999999999887 7788999999986432233455666778899999999 677666655
Q ss_pred -CCCcEEEEECC-CCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC-----------CeEEEEECCCCce--EEEecC
Q 002881 163 -LDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD-----------HTAKVWDYQTKSC--VQTLEG 227 (871)
Q Consensus 163 -~dg~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d-----------g~i~v~d~~~~~~--~~~~~~ 227 (871)
.++.+.+|++. .+.....+..+...+.++.|+|+++ +|++++.+ +.|.+||+.+++. +..+.+
T Consensus 192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 269 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD--KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG 269 (297)
T ss_dssp CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS--EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE
T ss_pred cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC--EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC
Confidence 58999999986 4555666777778889999999987 67766654 5699999988765 444446
Q ss_pred cccCeEEEEEcCCCCEEEEEECCC
Q 002881 228 HTHNVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 228 ~~~~v~~i~~~p~~~~l~~~~~dg 251 (871)
|...+.+++|+|+++.|++++.+.
T Consensus 270 ~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 270 GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp STTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCcccccceECCCCCEEEEEEecc
Confidence 788899999999999998887653
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=8.8e-21 Score=217.86 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=204.2
Q ss_pred CCChhhh-hhhccc-CCCCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCceeEEeeecC-CCEEEEEEeCCCCEEEEEe
Q 002881 1 MPLRLEI-KRKLAQ-RSERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGA 76 (871)
Q Consensus 1 m~~~~~~-~~~~~~-h~~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 76 (871)
||+.+.- .+.++. +..+|.+++|+|||++||+++. +|++.||++.+++.. .+..+. ..+..+.|+|| +.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~ 82 (582)
T 3o4h_A 5 MPVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRD 82 (582)
T ss_dssp -CCCHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEE
T ss_pred eeccHHHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEec
Confidence 5665533 234443 3668999999999999999877 999999998666554 454454 68999999999 7777776
Q ss_pred C---CCeEEEEECCC--CcEEEEEccCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEE
Q 002881 77 D---DMFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF 150 (871)
Q Consensus 77 ~---dg~i~iw~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 150 (871)
. +....+|.++. ......+..+. .+...+|+|+++. +++++.++.+.+||+.++ ........+. .+++|
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGG-GLRELARLPG---FGFVS 157 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEEEEEEESS---CEEEE
T ss_pred cCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEEEeecCCC---ceEEE
Confidence 5 44455654432 22222443322 3456788988863 344444455669999987 4444443333 78999
Q ss_pred ecCCCCEEEEEECC----CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC--eEEEEECCCCceEEE
Q 002881 151 NPKDTNTFASASLD----RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTKSCVQT 224 (871)
Q Consensus 151 ~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~ 224 (871)
+| +++.+++++.+ +.|.+||+.+++.. .+..+...+..++|+|+|+ .|+++..++ .|++||+.+++.. .
T Consensus 158 sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 158 DI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK--VTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC--EEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred CC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC--EEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 99 88999988777 78999999887754 6677888899999999998 677888888 8999999988877 7
Q ss_pred ecCcccCeEEEE--------EcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCe
Q 002881 225 LEGHTHNVSAVC--------FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (871)
Q Consensus 225 ~~~~~~~v~~i~--------~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~ 294 (871)
+..+...+..+. |+|+|.++++++.||.+++|++ ++... ...+.+.+++|+ +++.+++++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 777776666666 9999999999999999999998 66544 334678899999 9988888776654
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=9.5e-19 Score=187.24 Aligned_cols=235 Identities=9% Similarity=0.003 Sum_probs=187.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-------CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEC
Q 002881 57 ELPVRSAKFVARKQWVVAGAD-------DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDW 128 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~ 128 (871)
...+..++|+|+++++++++. ++.|.+||..+++.+..+... ..+..++|+|+++++++++ .++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999988874 568999999999988887643 4478899999999766554 4799999999
Q ss_pred CCCceEEEEeecCCc---------ceEEEEEecCCCCEEEEEE--CCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecC
Q 002881 129 EKGWMCTQIFEGHSH---------YVMQVTFNPKDTNTFASAS--LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197 (871)
Q Consensus 129 ~~~~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 197 (871)
.++. ....+..+.. .+.++.|+| +++.+++++ .++.|.+||+.+++....+..+...+..+.|+|++
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 119 KTGE-VKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp TTCC-EEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred CCCe-eEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 9884 4444443322 278899999 666666655 47899999999888877776556668899999998
Q ss_pred CcCEEEEEeCCCeEEEEECCCCceEEEecC----cccCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEecCCc
Q 002881 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPELPIIITGSE-DGTVRIWHATTYRLENTLNYGLE 272 (871)
Q Consensus 198 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~v~~i~~~p~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~ 272 (871)
+ ++++++.++.|.+||..+++....+.. +...+.+++|+|+++.+++++. ++.|.+||..+++....+..+.
T Consensus 197 ~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 197 K--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp T--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred C--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 7 688888899999999999988877654 4556888999999997777665 4899999999999888777653
Q ss_pred cEEEEEEeeCCCeEEEEE-cCCeEEEe
Q 002881 273 RVWAIGYMKSSRRIVIGY-DEGTIMVK 298 (871)
Q Consensus 273 ~i~~i~~~~~~~~l~~g~-~dg~i~i~ 298 (871)
...++|+|+++.++++. .++.+.+|
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEE
Confidence 25799999999777666 57888776
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=6.4e-19 Score=186.70 Aligned_cols=231 Identities=9% Similarity=0.075 Sum_probs=172.5
Q ss_pred EEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEEeec
Q 002881 63 AKFVARKQW-VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEG 140 (871)
Q Consensus 63 ~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~ 140 (871)
..|.++++. +++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 346666666 5566778999999999999988887766667 9999999998777766 889999999988442555566
Q ss_pred CCcceEEEEEecCCCCEEEEEECCC---cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCe-EEEEEC
Q 002881 141 HSHYVMQVTFNPKDTNTFASASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDY 216 (871)
Q Consensus 141 ~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~-i~v~d~ 216 (871)
+..+..+++|+| ++++++++..++ .|.+||+.+++....+.. .....+++|+|+++. ++++...++. |.+|++
T Consensus 82 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~-l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 GQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNG-LILIDRSSANTVRRFKI 158 (331)
T ss_dssp CSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSC-EEEEEETTTTEEEEEEE
T ss_pred CCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCE-EEEEecCCCceEEEEEE
Confidence 666655599999 788888655553 899999998887776654 445689999999874 5555566678 999998
Q ss_pred CCCceEE----EecCcccCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeE---EEEEecCCccEEEEEEeeCCCeEEE
Q 002881 217 QTKSCVQ----TLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRL---ENTLNYGLERVWAIGYMKSSRRIVI 288 (871)
Q Consensus 217 ~~~~~~~----~~~~~~~~v~~i~~~p~~~~l~~~~-~dg~v~iwd~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~ 288 (871)
.....+. ........+..++|+|+|+++++++ .++.|++||+.+++. +..+..+ ..+..++|+|+|+++++
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEE
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEE
Confidence 7543321 1123345688999999999665554 688999999998887 7777655 66789999999998776
Q ss_pred EEc-CCeEEEe
Q 002881 289 GYD-EGTIMVK 298 (871)
Q Consensus 289 g~~-dg~i~i~ 298 (871)
++. ++.+.+|
T Consensus 238 ~~~~~~~i~~~ 248 (331)
T 3u4y_A 238 LTESTVDVFNF 248 (331)
T ss_dssp ECSSEEEEEEE
T ss_pred EEcCCCEEEEE
Confidence 653 5556554
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=222.28 Aligned_cols=272 Identities=13% Similarity=0.112 Sum_probs=194.9
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCC---CEEEEEEeCCCCEEEEEeC---------CCeEEEEEC
Q 002881 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL---PVRSAKFVARKQWVVAGAD---------DMFIRVYNY 86 (871)
Q Consensus 19 ~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~ 86 (871)
.+++|+|+|.+++ .+.+|.|++||..+++....+..+.. .+.+++|||||++|++++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 4889999996554 44699999999999988777765543 4899999999999998876 789999999
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcce-----------------EEEE
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV-----------------MQVT 149 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~~~ 149 (871)
.+++.+... .....+..++|||||+.|+++. ++.|++||+.++........++...| .++.
T Consensus 98 ~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 988762111 1135688999999999999886 67999999988743222223333222 4899
Q ss_pred EecCCCCEEEEEECCC----------------------------------cEEEEECCCCCCe--EE------EecCCCC
Q 002881 150 FNPKDTNTFASASLDR----------------------------------TIKIWNLGSPDPN--FT------LDAHQKG 187 (871)
Q Consensus 150 ~~p~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--~~------~~~~~~~ 187 (871)
|+| +++.|++++.|. .|.+||+.+++.. .. +..+...
T Consensus 176 wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 176 WSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp ECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred ECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 999 888998887652 7889999876542 11 2346778
Q ss_pred eeEEEEeecCCcCEEEEEeCC----CeEEEEE----CCCCceEEEe----cCcccCeE-----EEEEcCCCCEEEE--EE
Q 002881 188 VNCVDYFTGGDKPYLITGSDD----HTAKVWD----YQTKSCVQTL----EGHTHNVS-----AVCFHPELPIIIT--GS 248 (871)
Q Consensus 188 i~~i~~~~~~~~~~l~~~~~d----g~i~v~d----~~~~~~~~~~----~~~~~~v~-----~i~~~p~~~~l~~--~~ 248 (871)
+..++|+|++. ++++.... ..|.+|| ..++++...+ .+|...+. .+.|+|+|+.++. +.
T Consensus 255 ~~~~~~SpD~~--~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 255 FSWLTWVTDER--VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEESSSSE--EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred EEEeEEeCCCe--EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 89999999954 55554322 2488999 8777665444 35666665 7899999985554 44
Q ss_pred CCC--cEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcC-----CeEEEe
Q 002881 249 EDG--TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE-----GTIMVK 298 (871)
Q Consensus 249 ~dg--~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~d-----g~i~i~ 298 (871)
.+| .|.+|++.+++ ...+..+...+..+.++ +++.|+..+.+ +...+|
T Consensus 333 ~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 333 KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 555 57777877766 34455555567777777 88887776654 555554
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=2.9e-20 Score=219.93 Aligned_cols=278 Identities=9% Similarity=0.054 Sum_probs=199.6
Q ss_pred hcccCCC---CEEEEEEcCCCCEEEEEEcC---------CeEEEEeCCCCceeEEeee---cCCCEEEEEEeCCCCEEEE
Q 002881 10 KLAQRSE---RVKSVDLHPSEPWILASLYS---------GTVCIWNYQSQTMAKSFEV---TELPVRSAKFVARKQWVVA 74 (871)
Q Consensus 10 ~~~~h~~---~v~~i~~s~~~~~la~~~~d---------g~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~ 74 (871)
.+.+|.. .|.+++|||||++|++++.+ +.+.+||+.+++. ..+.. |...+..++|||||++|++
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~ 130 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF 130 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE
Confidence 3444544 49999999999999998764 7889999998876 33432 3445889999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCe------------------EEEEEcCCCCEEEEEECCC---------------
Q 002881 75 GADDMFIRVYNYNTMDKVKVFEAHTDYI------------------RCVAVHPTLPYVLSSSDDM--------------- 121 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i------------------~~i~~~~~~~~l~~~~~dg--------------- 121 (871)
++. +.|++|+..+++.......+...+ .+++|||||++|++++.|+
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 886 799999999888776665544333 7899999999999987653
Q ss_pred -------------------eEEEEECCCCceEEEEeecC------CcceEEEEEecCCCCEEEEEEC----CCcEEEEEC
Q 002881 122 -------------------LIKLWDWEKGWMCTQIFEGH------SHYVMQVTFNPKDTNTFASASL----DRTIKIWNL 172 (871)
Q Consensus 122 -------------------~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d~ 172 (871)
.|.+||+.++. ....+..+ ...+.+++|+| +++.+++.+. +..|.+||+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEET
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeC
Confidence 79999998873 22333333 66799999999 7777766643 357999999
Q ss_pred CCCCCeEEEec-CCCCe----eEEEEeecCCcCEEEE-EeCCC------eEEEEE-CCCCc--eEEEecCcccCeEE-EE
Q 002881 173 GSPDPNFTLDA-HQKGV----NCVDYFTGGDKPYLIT-GSDDH------TAKVWD-YQTKS--CVQTLEGHTHNVSA-VC 236 (871)
Q Consensus 173 ~~~~~~~~~~~-~~~~i----~~i~~~~~~~~~~l~~-~~~dg------~i~v~d-~~~~~--~~~~~~~~~~~v~~-i~ 236 (871)
.+++....+.. +...+ ..+.|+|+++. ++++ +..++ .|.+|| ..++. +...+..+...+.. ++
T Consensus 288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK-FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTCCEEEEEEEECSSCCCCCCCCCEECTTSCS-EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCcceEEEEeccCCEEeccCCCceEcCCCCe-EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 98876655443 23333 37899999985 3333 55667 577777 34444 14455433444554 69
Q ss_pred EcCCCCEEEEEECC---CcEEEEeCCCCe--EEEEEec---CCccEEEEEEeeCCCeEEEEEcC
Q 002881 237 FHPELPIIITGSED---GTVRIWHATTYR--LENTLNY---GLERVWAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 237 ~~p~~~~l~~~~~d---g~v~iwd~~~~~--~~~~~~~---~~~~i~~i~~~~~~~~l~~g~~d 292 (871)
|+|+|+.|+..+.+ +.+++|++.... ....+.. +...+..++|+|+|+.+++.+..
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 99999999876655 789999876432 2333432 34568899999999999876543
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=4.3e-18 Score=181.62 Aligned_cols=267 Identities=11% Similarity=0.093 Sum_probs=185.4
Q ss_pred EEEEEEc----CCeEEEEeCC--CCceeE-EeeecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCc--EEEEEc
Q 002881 29 WILASLY----SGTVCIWNYQ--SQTMAK-SFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMD--KVKVFE 96 (871)
Q Consensus 29 ~la~~~~----dg~v~iwd~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~--~~~~~~ 96 (871)
.+++|++ ++.|.+|+++ +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4566644 3456676654 555443 2334556788899999999 665554 6899999997765 344445
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEE--EEeec---------CCcceEEEEEecCCCCEEEEEECC
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCT--QIFEG---------HSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~---------~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
.+...+..++|+|+|++|++++ .++.|.+|++....... ..+.. +...+.+++|+| +++++++...+
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~ 161 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGS 161 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCC
Confidence 5677889999999999999888 67999999996321222 22211 123488999999 66677766778
Q ss_pred CcEEEEECC-CCCCeE--EEec-CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC--Cce--EEEecCcc------c
Q 002881 165 RTIKIWNLG-SPDPNF--TLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT--KSC--VQTLEGHT------H 230 (871)
Q Consensus 165 g~i~i~d~~-~~~~~~--~~~~-~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~--~~~~~~~~------~ 230 (871)
+.|.+|++. +++... .+.. ....+..++|+|+++. +++++..++.|.+|++.. ++. +..+.... .
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~-l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY-AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE-EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 899999998 443221 1222 2336788999999873 344456788999999874 443 22332222 3
Q ss_pred CeEEEEEcCCCCEE-EEEECCCcEEEEeCCC---CeEEEEEecCCccEEEEEEeeCCCeEEEEEcC-CeEEEe
Q 002881 231 NVSAVCFHPELPII-ITGSEDGTVRIWHATT---YRLENTLNYGLERVWAIGYMKSSRRIVIGYDE-GTIMVK 298 (871)
Q Consensus 231 ~v~~i~~~p~~~~l-~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~d-g~i~i~ 298 (871)
.+..++|+|+|++| +++..++.|.+|++.. .+.+..+..+...+..++|+|+|++|++++.+ +.+.+|
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 48889999999977 4556689999999872 24555666555668899999999999888764 788776
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.2e-18 Score=186.01 Aligned_cols=241 Identities=10% Similarity=0.074 Sum_probs=185.6
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecC-CCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEEEEcc
Q 002881 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~ 97 (871)
.+++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|+|+.++++ ..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788889999999999999999999999888887543 257899999999976654 5689999999999988877763
Q ss_pred CC------CCeEEEEEcCCCCEEEEEECC------------CeEEEEECCCCce--EEEEeecCCcceEEEEEecCCCCE
Q 002881 98 HT------DYIRCVAVHPTLPYVLSSSDD------------MLIKLWDWEKGWM--CTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 98 ~~------~~i~~i~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
+. ..+.+++|+|+|++|++++.+ +.|.+||+.++.. ...... +...+.+++|+| +++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-
Confidence 32 237889999999999998865 8999999987422 122333 334588999999 666
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEecCC----------------------------------------------------
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLDAHQ---------------------------------------------------- 185 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------------------------- 185 (871)
+++++ +.|.+||+.+++....+....
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 55544 459999998877665554221
Q ss_pred ----------------CCeeEEEEee-cCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE
Q 002881 186 ----------------KGVNCVDYFT-GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 186 ----------------~~i~~i~~~~-~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
..+..++++| +++ +++++ ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~--~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPN--QIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTT--EEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCC--EEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec
Confidence 1234556667 766 56666 88999999999988777763 34577899999999888888
Q ss_pred CCCcEEEEeCCCCeEEEEEecC
Q 002881 249 EDGTVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~ 270 (871)
.++.|.+||..+++.+..+..+
T Consensus 314 ~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp BSSEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEEEeccccceeeeeecC
Confidence 8999999999999988777654
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=1.1e-18 Score=185.27 Aligned_cols=243 Identities=11% Similarity=0.061 Sum_probs=187.4
Q ss_pred CEEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCceeEEeeecC-----CCEEEEEEeCCCCEEEEEe------------CC
Q 002881 17 RVKSVDLHPSEPWILASL-YSGTVCIWNYQSQTMAKSFEVTE-----LPVRSAKFVARKQWVVAGA------------DD 78 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~------------~d 78 (871)
.+.+++|+|+|+++++++ .++.|.+||..+++.+..+.... ..+.+++|+|+|+++++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 588999999998776554 47899999999998887766321 2577899999999999886 57
Q ss_pred CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 79 MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
+.|.+||..+++....+.. ...+.+++|+|++++|+++ ++.|.+||+.++ .....+..+.. ...+.|+| ++..+
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~s~-dg~~l 188 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAG-TLVEDKPIQSW-EAETYAQP-DVLAV 188 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTT-EEEEEECSTTT-TTTTBCCC-BCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCC-cEeeeeecccc-CCCceeCC-CccEE
Confidence 9999999999888877764 4567889999999988888 688999999988 44444443320 01236788 45544
Q ss_pred EEEEC-CC-----------------------cEEEEECCCCCCe-EEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEE
Q 002881 159 ASASL-DR-----------------------TIKIWNLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (871)
Q Consensus 159 ~~~~~-dg-----------------------~i~i~d~~~~~~~-~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v 213 (871)
+.++. ++ .|.+||+.+++.. ..+..+...+.+++|+|+++ +++++ ++.|.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~--~~~v~~ 264 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT--RAFGA--YNVLES 264 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS--EEEEE--ESEEEE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC--EEEEe--CCeEEE
Confidence 43332 22 4689999887754 22345556788999999887 56666 689999
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC
Q 002881 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 214 ~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (871)
||+.+++.+..+.. ...+.+++|+|+++++++++.++.|.+||+.+++.+..+..+
T Consensus 265 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 265 FDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99999888877764 346789999999999999999999999999999888777654
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=5.6e-18 Score=180.74 Aligned_cols=247 Identities=11% Similarity=0.144 Sum_probs=177.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC
Q 002881 13 QRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNY 86 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~---dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~ 86 (871)
.+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+|+|++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3556778899999999 666554 5899999997776 3344455777889999999999999888 6899999999
Q ss_pred CC-Cc--EEEEEcc---------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCceEEE--Eeec-CCcceEEEEE
Q 002881 87 NT-MD--KVKVFEA---------HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE-KGWMCTQ--IFEG-HSHYVMQVTF 150 (871)
Q Consensus 87 ~~-~~--~~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~--~~~~-~~~~v~~~~~ 150 (871)
.. +. .+..+.. +...+.+++|+|+|+.+++...++.|.+|++. ++ .... .+.. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEE
Confidence 63 32 2333321 12348899999999955555668899999998 44 2222 1122 2335788999
Q ss_pred ecCCCCEEEE-EECCCcEEEEECCC--CCC--eEEEecCC------CCeeEEEEeecCCcCEE-EEEeCCCeEEEEECCC
Q 002881 151 NPKDTNTFAS-ASLDRTIKIWNLGS--PDP--NFTLDAHQ------KGVNCVDYFTGGDKPYL-ITGSDDHTAKVWDYQT 218 (871)
Q Consensus 151 ~p~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~------~~i~~i~~~~~~~~~~l-~~~~~dg~i~v~d~~~ 218 (871)
+| +++++++ +..++.|.+|++.. ++. ...+.... ..+..++|+|+++ ++ ++...++.|.+|++..
T Consensus 195 sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 195 SP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH--FLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC--EEEEEEETTTEEEEEEECG
T ss_pred CC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC--EEEEEeCCCCEEEEEEECC
Confidence 99 6775544 56788999999874 322 22222222 3478899999987 45 5566789999999873
Q ss_pred ---CceEEEecCcccCeEEEEEcCCCCEEEEEECC-CcEEEE--eCCCCeEE
Q 002881 219 ---KSCVQTLEGHTHNVSAVCFHPELPIIITGSED-GTVRIW--HATTYRLE 264 (871)
Q Consensus 219 ---~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~d-g~v~iw--d~~~~~~~ 264 (871)
.+.+..+..+...+..++|+|+|++|++++.+ +.|.+| |..++++.
T Consensus 272 ~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 272 DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 24455666666678899999999988888765 899999 65667654
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=6.3e-19 Score=192.75 Aligned_cols=200 Identities=13% Similarity=0.077 Sum_probs=154.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCC----------ceeEE-----eeecCCCEEEEEEeCCCCEEE----E
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----------TMAKS-----FEVTELPVRSAKFVARKQWVV----A 74 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~ 74 (871)
....+..+++++++.++++++.+| ++||+.... ..... ...+..+|++++|+|+|++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 344688999999999999998887 888874210 01111 112456799999999999999 7
Q ss_pred EeCCCeEEEEECCCC--------c---EEEEEccCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCceEEEEeecCC
Q 002881 75 GADDMFIRVYNYNTM--------D---KVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS 142 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~--------~---~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 142 (871)
|+.|+.|++||+.++ + ....+.+|...|.+++|+|+ +.+|++++.||.|++||++++ .......+|.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCATLPST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEEEECGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceeeccCCC
Confidence 788999999998654 2 24555679999999999998 789999999999999999988 4444556788
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCC-------CCeeEEEEeecCCcCEEEE-EeCCC-----
Q 002881 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ-------KGVNCVDYFTGGDKPYLIT-GSDDH----- 209 (871)
Q Consensus 143 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~~~l~~-~~~dg----- 209 (871)
..|.+++|+| ++++|++|+.||+|++||++ ++....+..+. ..+.++.|++++. ++++ +..+|
T Consensus 193 ~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~--~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 193 VAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV--FAIVYAAADGTLETS 268 (434)
T ss_dssp GCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE--EEEEEEETTCCSSSC
T ss_pred CceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce--EEEEEccCCCccCCC
Confidence 8999999999 79999999999999999998 55555554332 3788999998654 4433 33443
Q ss_pred -eEEEEECCCC
Q 002881 210 -TAKVWDYQTK 219 (871)
Q Consensus 210 -~i~v~d~~~~ 219 (871)
.+++|++...
T Consensus 269 ~~v~i~~l~~~ 279 (434)
T 2oit_A 269 PDVVMALLPKK 279 (434)
T ss_dssp CEEEEEECCCT
T ss_pred CceEEEEeccC
Confidence 3899999854
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=1.6e-18 Score=188.28 Aligned_cols=286 Identities=9% Similarity=0.037 Sum_probs=199.2
Q ss_pred hhhcccCCCCEEE-----EEEcCCCCEEEEEEc-CC--eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCC
Q 002881 8 KRKLAQRSERVKS-----VDLHPSEPWILASLY-SG--TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM 79 (871)
Q Consensus 8 ~~~~~~h~~~v~~-----i~~s~~~~~la~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 79 (871)
.+.++.|...... .+|||||++|+.++. +| .|.+||..+++.......+...+....|+|||+.|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 4556677766776 899999999999887 66 488899998887776666665665778999999999999999
Q ss_pred eEEEEECCCCcEEEEEccCCCCeEEEEE--cCCCCEEEEEE----------------------CCCeEEEEECCCCceEE
Q 002881 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAV--HPTLPYVLSSS----------------------DDMLIKLWDWEKGWMCT 135 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~ 135 (871)
.|++||+.+++.......+...+....| +|++.+++... .++.|.+||+.++ ...
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-EST 181 (388)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-CEE
T ss_pred eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-ceE
Confidence 9999999999887777766665654444 89998887432 3468999999987 333
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECC------CcEEEEECCCCCCeEEEecCC--CCeeEEEEeecCCcCEEEEEeC
Q 002881 136 QIFEGHSHYVMQVTFNPKDTNTFASASLD------RTIKIWNLGSPDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
.. ..+...+..+.|+|.+++.++.+..+ ..|.++|..++.. ..+..+. ..+....|+|+++. +++++..
T Consensus 182 ~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~-l~~~~~~ 258 (388)
T 3pe7_A 182 VI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSA-LVYVSYL 258 (388)
T ss_dssp EE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSC-EEEEEEE
T ss_pred Ee-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCE-EEEEecC
Confidence 33 34556789999999445566655543 3788888866543 3333333 24778899999985 3233332
Q ss_pred CC----eEEEEECCCCceE--EEecCcccC---eEEEEEcCCCCEEEEE---------ECCCcEEEEeCCCCeEEEEEec
Q 002881 208 DH----TAKVWDYQTKSCV--QTLEGHTHN---VSAVCFHPELPIIITG---------SEDGTVRIWHATTYRLENTLNY 269 (871)
Q Consensus 208 dg----~i~v~d~~~~~~~--~~~~~~~~~---v~~i~~~p~~~~l~~~---------~~dg~v~iwd~~~~~~~~~~~~ 269 (871)
++ .|++||+.+++.. ..+.++... ...+.|+|+|+.|+.. ..+..|++||+.+++.. .+..
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~ 337 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVAR 337 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEE
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-Eecc
Confidence 22 3999999988743 233321111 1123799999877754 44668999999987754 3443
Q ss_pred CCc-----------cEEEEEEeeCCCeEEEEEc-CCeEEEe
Q 002881 270 GLE-----------RVWAIGYMKSSRRIVIGYD-EGTIMVK 298 (871)
Q Consensus 270 ~~~-----------~i~~i~~~~~~~~l~~g~~-dg~i~i~ 298 (871)
+.. .+.+++|+|||+.|+..+. +|...+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 433 4778899999999887664 4554443
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=3.1e-17 Score=176.05 Aligned_cols=269 Identities=10% Similarity=0.071 Sum_probs=187.3
Q ss_pred cCCCCEEEEEEc----CCeEEEEeC--CCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCC--CcE
Q 002881 24 HPSEPWILASLY----SGTVCIWNY--QSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----MFIRVYNYNT--MDK 91 (871)
Q Consensus 24 s~~~~~la~~~~----dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~--~~~ 91 (871)
.+...++++|++ ++.|.+|.+ .+++.......+...+..++|+|+|++|++++.+ +.|.+|+++. ++.
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 334456777765 467888866 4565544333366778889999999999999886 7999998865 433
Q ss_pred --EEEEccCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEE---E--eec--------CCcceEEEEEecCCC
Q 002881 92 --VKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQ---I--FEG--------HSHYVMQVTFNPKDT 155 (871)
Q Consensus 92 --~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~---~--~~~--------~~~~v~~~~~~p~~~ 155 (871)
+.....+......+++ ++++|++++ .++.|.+|++........ . ..+ +...+.+++|+| ++
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg 166 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DG 166 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CC
Confidence 3334445566778888 788888776 578999999975422211 1 111 123458899999 67
Q ss_pred CEEEEEE-CCCcEEEEECCCCCC------e-------EEEecCCCCeeEEEEeecCCcCEEEEEe-CCCeEEEEECCCCc
Q 002881 156 NTFASAS-LDRTIKIWNLGSPDP------N-------FTLDAHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKS 220 (871)
Q Consensus 156 ~~l~~~~-~dg~i~i~d~~~~~~------~-------~~~~~~~~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~ 220 (871)
+.+++++ .++.|.+|++..... . .........+..++|+|+++ ++++++ .++.|.+|++.++.
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK--FAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTCEEEEEEEETTE
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC--EEEEEcCCCCeEEEEEecCCc
Confidence 7555544 588999999875442 1 11223455678999999987 566665 68999999998765
Q ss_pred e--EEEe---cCcccCeEEEEEcCCCCEEEEEECC--CcEEEEeCC--CCe--EEEEEecCCccEEEEEEeeCCCeEEEE
Q 002881 221 C--VQTL---EGHTHNVSAVCFHPELPIIITGSED--GTVRIWHAT--TYR--LENTLNYGLERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 221 ~--~~~~---~~~~~~v~~i~~~p~~~~l~~~~~d--g~v~iwd~~--~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~g 289 (871)
. +..+ ..+......++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+|+|++|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEE
T ss_pred eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEE
Confidence 4 2323 2233457899999999988776654 899999985 454 3444444 4567899999999999988
Q ss_pred E-cCCeEEEe
Q 002881 290 Y-DEGTIMVK 298 (871)
Q Consensus 290 ~-~dg~i~i~ 298 (871)
+ .++.+.+|
T Consensus 324 ~~~~~~v~v~ 333 (361)
T 3scy_A 324 CRDTNVIQIF 333 (361)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCEEEE
Confidence 7 56777775
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=4.7e-18 Score=200.49 Aligned_cols=268 Identities=12% Similarity=0.081 Sum_probs=188.3
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCC-----EEEEEEeCCCCEEEEEeCC---------Ce
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP-----VRSAKFVARKQWVVAGADD---------MF 80 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~ 80 (871)
.....++.|+|||.+++++ +|.|++||+.+++....+..|... ...+.|||||++|++++.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3456789999999988886 999999999999987777776532 2448999999999998876 66
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcce---------------
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV--------------- 145 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--------------- 145 (871)
+.+||+.+++.. .+..|...+...+|||||+.|+.+. ++.|++|++.++.....+..++...+
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 779999998754 4666778899999999999999885 67999999988743332333333222
Q ss_pred --EEEEEecCCCCEEEEEECCC------------------------------------cEEEEECCC---CC--CeEEEe
Q 002881 146 --MQVTFNPKDTNTFASASLDR------------------------------------TIKIWNLGS---PD--PNFTLD 182 (871)
Q Consensus 146 --~~~~~~p~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~ 182 (871)
..+.|+| +++.|+.++.|. +|.+||+.+ ++ ....+.
T Consensus 172 ~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 172 AYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 3489999 888888775322 478899987 63 233443
Q ss_pred c------CCCCeeEEEEeecCCcCEEEEEeC----CCeEEEEECCCCc----eE--EEe--cCcccCeE-----EEEEcC
Q 002881 183 A------HQKGVNCVDYFTGGDKPYLITGSD----DHTAKVWDYQTKS----CV--QTL--EGHTHNVS-----AVCFHP 239 (871)
Q Consensus 183 ~------~~~~i~~i~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~----~~--~~~--~~~~~~v~-----~i~~~p 239 (871)
. +...+..++|+|+++ .++.... +..|.+||+.+++ +. ..+ ..+...+. .+.|+|
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~--~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQER--ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTE--EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred CCccCCCCCeEEEEEEEeCCCe--EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 2 667789999999987 4444432 2379999998887 22 111 33444443 788999
Q ss_pred CCCEEE-EEEC-C--CcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc
Q 002881 240 ELPIII-TGSE-D--GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 240 ~~~~l~-~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
||+.++ ..+. + ..|++||..+++.. .+......+..+. .++++.|+..+.
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEE-EEeCCEEEEEEe
Confidence 999877 6653 3 35888898766544 3333334555543 245666655443
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=4.1e-19 Score=194.27 Aligned_cols=214 Identities=14% Similarity=0.115 Sum_probs=165.4
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------cEEEE-----EccCCCC
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----------DKVKV-----FEAHTDY 101 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~-----~~~~~~~ 101 (871)
+.+++|+.. .. .+...++.+++++++.++++++.++ +++|+.... ..... .-.+...
T Consensus 23 ~~vri~~~~-~~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSP-EE------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCC-SS------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCc-cc------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 568888742 11 1344688999999999999999988 888875311 01111 1135678
Q ss_pred eEEEEEcCCCCEEE----EEECCCeEEEEECCCC-----c-----eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 102 IRCVAVHPTLPYVL----SSSDDMLIKLWDWEKG-----W-----MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 102 i~~i~~~~~~~~l~----~~~~dg~i~iwd~~~~-----~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
|.+++|+|++++|+ +|+.|+.|++||+++. . .....+.+|...|.+++|+|.++++|++++.||+|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 7788999999998653 1 12455667999999999999558999999999999
Q ss_pred EEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc-------ccCeEEEEEcCC
Q 002881 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-------THNVSAVCFHPE 240 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------~~~v~~i~~~p~ 240 (871)
++||++++........|...|.+++|+|+++ +|++|+.||.|++||.+ ++....+..| ...|.+++|+++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~--~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~ 251 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGK--QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT 251 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSS--CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCC--EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence 9999998866666677888999999999987 79999999999999998 6655555433 237999999998
Q ss_pred CCEEEEE-ECCCc------EEEEeCCCC
Q 002881 241 LPIIITG-SEDGT------VRIWHATTY 261 (871)
Q Consensus 241 ~~~l~~~-~~dg~------v~iwd~~~~ 261 (871)
+.++++. +.||. +++|++.+.
T Consensus 252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 252 YVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceEEEEEccCCCccCCCCceEEEEeccC
Confidence 8776543 34433 899998754
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=3.5e-17 Score=175.61 Aligned_cols=261 Identities=10% Similarity=0.105 Sum_probs=182.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcC----CeEEEEeCCC--Ccee--EEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYS----GTVCIWNYQS--QTMA--KSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVY 84 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~d----g~v~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw 84 (871)
+...+..++|+|+|++|++++.+ |.|.+|++.. ++.. .....+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999998875 7999998765 4432 233334556777887 888888776 58899999
Q ss_pred ECCCCcEEEEE------cc--------CCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCce------E------EEE
Q 002881 85 NYNTMDKVKVF------EA--------HTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWM------C------TQI 137 (871)
Q Consensus 85 ~~~~~~~~~~~------~~--------~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~------~------~~~ 137 (871)
++.+...+... .+ +...+.+++|+|+|++|++++. ++.|.+|++..... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754332111 11 1234588999999997776654 78999999875431 1 122
Q ss_pred eecCCcceEEEEEecCCCCEEEEEE-CCCcEEEEECCCCCC--eEEEe---cCCCCeeEEEEeecCCcCEEEEEeC--CC
Q 002881 138 FEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSPDP--NFTLD---AHQKGVNCVDYFTGGDKPYLITGSD--DH 209 (871)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~---~~~~~i~~i~~~~~~~~~~l~~~~~--dg 209 (871)
...+...+..++|+| +++++++++ .++.|.+|++.+++. ...+. .+......++|+|+++ +++++.. ++
T Consensus 206 ~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~--~l~v~~~~~~~ 282 (361)
T 3scy_A 206 KVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK--YLYASNRLKAD 282 (361)
T ss_dssp ECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS--EEEEEECSSSC
T ss_pred ecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC--EEEEECCCCCC
Confidence 233445678999999 777777666 689999999986543 22222 2234467999999987 5656554 58
Q ss_pred eEEEEECC--CCc--eEEEecCcccCeEEEEEcCCCCEEEEEE-CCCcEEEE--eCCCCeEEEEE-ecCCccEEEEEEe
Q 002881 210 TAKVWDYQ--TKS--CVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIW--HATTYRLENTL-NYGLERVWAIGYM 280 (871)
Q Consensus 210 ~i~v~d~~--~~~--~~~~~~~~~~~v~~i~~~p~~~~l~~~~-~dg~v~iw--d~~~~~~~~~~-~~~~~~i~~i~~~ 280 (871)
.|.+|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+| |..++++.... ..+...+.|+.|.
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99999985 444 3444444 45678999999999888887 67889995 55677765443 2234567888775
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=3.8e-18 Score=195.92 Aligned_cols=232 Identities=9% Similarity=-0.005 Sum_probs=174.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEEEccCC-CCeEEEEEcCCCCEEEEEEC---CCeEEEEECCC-
Q 002881 57 ELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKVFEAHT-DYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEK- 130 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~---dg~i~iwd~~~- 130 (871)
..+|.+++|+|||++|++++. ||++.||++.+++. ..+..|. ..+..++|+|+ +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 568999999999999999887 99999999976655 4444454 68999999999 77777765 45455654432
Q ss_pred -CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC-
Q 002881 131 -GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD- 208 (871)
Q Consensus 131 -~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d- 208 (871)
....... ... ..+...+|+|++...+++.+.++.+.+||+.+++.......+ . .++.|+|+|+ ++++++.+
T Consensus 99 ~~g~~~~l-~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~--~la~~~~~~ 171 (582)
T 3o4h_A 99 RPGEEQRL-EAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGD--LIAGLGFFG 171 (582)
T ss_dssp STTCCEEC-TTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETT--EEEEEEEEE
T ss_pred CCCccccc-cCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCC--EEEEEEEcC
Confidence 2122222 222 234466888855555555555666669999887654444332 2 7899999998 68877766
Q ss_pred ---CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCC--cEEEEeCCCCeEEEEEecCCccEEEEE-----
Q 002881 209 ---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG--TVRIWHATTYRLENTLNYGLERVWAIG----- 278 (871)
Q Consensus 209 ---g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~i~----- 278 (871)
+.|++||+.+++.. .+..+...+..++|+|||+.|+++..+| .|++||+.+++.. .+..+...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp TTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEE
T ss_pred CCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccc
Confidence 78999999887754 5677888899999999999999888888 8999999988877 6666656666666
Q ss_pred ---EeeCCCeEEEEEcCCeEEEec
Q 002881 279 ---YMKSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 279 ---~~~~~~~l~~g~~dg~i~i~~ 299 (871)
|+|||..+++++.+|.+.+|.
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEE
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999998888999999998873
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=5.1e-17 Score=176.28 Aligned_cols=246 Identities=9% Similarity=0.009 Sum_probs=172.1
Q ss_pred EEEEeCCCCceeEEeeecCCCEEE-----EEEeCCCCEEEEEeC-CC--eEEEEECCCCcEEEEEccCCCCeEEEEEcCC
Q 002881 39 VCIWNYQSQTMAKSFEVTELPVRS-----AKFVARKQWVVAGAD-DM--FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT 110 (871)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~ 110 (871)
...++..++..+..+..+...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+|+
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 344577788888888877766665 889999999999887 66 5888999998877766666666667889999
Q ss_pred CCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEE--ecCCCCEEEEEE----------------------CCCc
Q 002881 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF--NPKDTNTFASAS----------------------LDRT 166 (871)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~----------------------~dg~ 166 (871)
|+.|+.++.++.|.+||+.++ ........+...+....| +| ++..++... .++.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATL-EENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTC-CEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCC-cceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 999999999999999999988 445555555555544444 77 677766432 3467
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEee-cCCcCEEEEEeCC------CeEEEEECCCCceEEEecCcc--cCeEEEEE
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDD------HTAKVWDYQTKSCVQTLEGHT--HNVSAVCF 237 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~--~~v~~i~~ 237 (871)
|.+||+.+++. ..+..+...+..+.|+| +++ .|+....+ ..|.++|..++.. ..+..+. ..+..+.|
T Consensus 170 l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~--~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 170 LMRVDLKTGES-TVILQENQWLGHPIYRPYDDS--TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFW 245 (388)
T ss_dssp EEEEETTTCCE-EEEEEESSCEEEEEEETTEEE--EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEE
T ss_pred EEEEECCCCce-EEeecCCccccccEECCCCCC--EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceE
Confidence 99999988764 44445666789999999 887 46655543 3788888875544 3343333 35778999
Q ss_pred cCCCCEEEEEEC-CC----cEEEEeCCCCeEEEEEecCC--cc---EEEEEEeeCCCeEEEEE
Q 002881 238 HPELPIIITGSE-DG----TVRIWHATTYRLENTLNYGL--ER---VWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 238 ~p~~~~l~~~~~-dg----~v~iwd~~~~~~~~~~~~~~--~~---i~~i~~~~~~~~l~~g~ 290 (871)
+|+|+.|+..+. ++ .|++||+.+++......... .. .....|+|||+.|++..
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 308 (388)
T 3pe7_A 246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV 308 (388)
T ss_dssp CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence 999997765443 22 39999999887433222111 00 11236899999888653
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=2.5e-16 Score=168.92 Aligned_cols=266 Identities=11% Similarity=0.066 Sum_probs=182.2
Q ss_pred EEEEEEcC--CeEEEEeC--CCCceeEEee---ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEEcc-CC
Q 002881 29 WILASLYS--GTVCIWNY--QSQTMAKSFE---VTELPVRSAKFVARKQWVVAGADDMFIRVYNYN-TMDKVKVFEA-HT 99 (871)
Q Consensus 29 ~la~~~~d--g~v~iwd~--~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~-~~ 99 (871)
++++|++. +.|.+|++ .++++...-. .....+..++|+|+|++|++++.+ .|.+|++. +++....... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46677764 56877765 4565432212 133468899999999999999888 99999997 7766543321 11
Q ss_pred CCeEEEEEcCCCCE--EEEEE-------------CCCeEEEEECCCCceEEEEee----cCCcceEEEEEecCCCCEEEE
Q 002881 100 DYIRCVAVHPTLPY--VLSSS-------------DDMLIKLWDWEKGWMCTQIFE----GHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 100 ~~i~~i~~~~~~~~--l~~~~-------------~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~ 160 (871)
+.+.+++|+|+|++ +++++ .+|.+.+|++........... .+...+.+++|+| +++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~ 161 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYS 161 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEE
Confidence 23567899999985 44543 689999999974223332222 2456789999999 7777777
Q ss_pred EEC-CCcEEEEECC-CCCCe--EEEe--cCCCCeeEEEEeecCCcCEEEEEe-CCCeEEEEECC--CCceE---EEec--
Q 002881 161 ASL-DRTIKIWNLG-SPDPN--FTLD--AHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQ--TKSCV---QTLE-- 226 (871)
Q Consensus 161 ~~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~--~~~~~---~~~~-- 226 (871)
++. ++.|.+|++. +++.. ..+. .+...+..++|+|+++ ++++++ .++.|.+|++. +++.. ..+.
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~--~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN--YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC--EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 664 6899999998 56532 2233 2356688999999987 566665 47899999865 45542 1222
Q ss_pred -C----ccc------CeEEEE-EcCCCCEEEEEECCC------cEEEEeCC-CCeEEE---EEecCCccEEEEEEee---
Q 002881 227 -G----HTH------NVSAVC-FHPELPIIITGSEDG------TVRIWHAT-TYRLEN---TLNYGLERVWAIGYMK--- 281 (871)
Q Consensus 227 -~----~~~------~v~~i~-~~p~~~~l~~~~~dg------~v~iwd~~-~~~~~~---~~~~~~~~i~~i~~~~--- 281 (871)
. +.. .+..++ |+|+|++|++++.++ .|.+|++. +++... ....+...+..++|+|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence 1 121 478999 999999888765432 89999986 666543 2333334567899999
Q ss_pred CCCeEEEEEcC-CeEEEe
Q 002881 282 SSRRIVIGYDE-GTIMVK 298 (871)
Q Consensus 282 ~~~~l~~g~~d-g~i~i~ 298 (871)
+|++|++++.+ +.+.+|
T Consensus 320 dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp CTTEEEEECSSSCEEEEE
T ss_pred CCCEEEEEEcCCCeEEEE
Confidence 89999998764 888876
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=1.3e-16 Score=170.27 Aligned_cols=228 Identities=10% Similarity=0.020 Sum_probs=175.1
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCC-CCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEee
Q 002881 62 SAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFE 139 (871)
Q Consensus 62 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 139 (871)
.+++++++..+++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++++ ..++.|.+||+.++. ....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-NTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-EEEEEE
Confidence 45678889999999999999999999999888876543 257889999999876654 468999999999884 333333
Q ss_pred -cC-----CcceEEEEEecCCCCEEEEEECC------------CcEEEEECCCCC---CeEEEecCCCCeeEEEEeecCC
Q 002881 140 -GH-----SHYVMQVTFNPKDTNTFASASLD------------RTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGD 198 (871)
Q Consensus 140 -~~-----~~~v~~~~~~p~~~~~l~~~~~d------------g~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~~ 198 (871)
.+ ...+..++|+| +++.+++++.+ +.|.+||+.+++ ...... +...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred cccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc
Confidence 22 23367899999 78888888765 899999998743 333443 344688899999886
Q ss_pred cCEEEEEeCCCeEEEEECCCCceEEEecCcc-------------------------------------------------
Q 002881 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------------------------------------------------- 229 (871)
Q Consensus 199 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------------------------------------------------- 229 (871)
+++ ++ +.|.+||..+++.+..+..+.
T Consensus 161 --l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 161 --LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp --EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred --EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 444 43 349999999888776654321
Q ss_pred -------------------cCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEE
Q 002881 230 -------------------HNVSAVCFHP-ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 230 -------------------~~v~~i~~~p-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g 289 (871)
..+.+++|+| ++++++++ ++.|.+||+.+++....+... ..+.+++|+|+++.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEE
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEe
Confidence 1345677889 99998888 789999999999988877654 457899999999999998
Q ss_pred EcCCeEEEecC
Q 002881 290 YDEGTIMVKIG 300 (871)
Q Consensus 290 ~~dg~i~i~~~ 300 (871)
+.++.+.+|..
T Consensus 313 ~~~~~v~v~d~ 323 (349)
T 1jmx_B 313 GTFNDLAVFNP 323 (349)
T ss_dssp SBSSEEEEEET
T ss_pred cCCCeEEEEec
Confidence 88899988743
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=7e-18 Score=199.14 Aligned_cols=269 Identities=9% Similarity=0.053 Sum_probs=189.3
Q ss_pred CEEEEEEcCCCCEEEEEEc---------CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 17 RVKSVDLHPSEPWILASLY---------SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
.+.+++|||||++|++++. ++.|++||+.+++.+.... ....+..++|||||++|+++. ++.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 3889999999999998876 6899999999987621111 135688999999999999986 7899999998
Q ss_pred CCcEEEEE-ccCCCCe-----------------EEEEEcCCCCEEEEEECCC----------------------------
Q 002881 88 TMDKVKVF-EAHTDYI-----------------RCVAVHPTLPYVLSSSDDM---------------------------- 121 (871)
Q Consensus 88 ~~~~~~~~-~~~~~~i-----------------~~i~~~~~~~~l~~~~~dg---------------------------- 121 (871)
+++..... .++...| .+++|||||++|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 87765432 2333222 4899999999999987652
Q ss_pred ------eEEEEECCCCceE--EEE-----eecCCcceEEEEEecCCCCEEEEEECCC----cEEEEE----CCCCCCeEE
Q 002881 122 ------LIKLWDWEKGWMC--TQI-----FEGHSHYVMQVTFNPKDTNTFASASLDR----TIKIWN----LGSPDPNFT 180 (871)
Q Consensus 122 ------~i~iwd~~~~~~~--~~~-----~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d----~~~~~~~~~ 180 (871)
.|.+||+.++... ... +.+|...+.+++|+| ++.++++....+ .|.+|| +.+++....
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 7889999887321 121 235788899999999 566666644332 488899 766654433
Q ss_pred E----ecCCCCee-----EEEEeecCCcCEEEEEeCCC--eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 181 L----DAHQKGVN-----CVDYFTGGDKPYLITGSDDH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 181 ~----~~~~~~i~-----~i~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
+ ..+...+. .+.|+|+++.-+++++..+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 3 35566565 78999998852233344555 57777887666 45555566668887777 7777777665
Q ss_pred C-----CcEEEEeCCC--Ce-EEEEEec----CCccEEEEEEeeCCCeEEEEE
Q 002881 250 D-----GTVRIWHATT--YR-LENTLNY----GLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 250 d-----g~v~iwd~~~--~~-~~~~~~~----~~~~i~~i~~~~~~~~l~~g~ 290 (871)
+ +..++|.+.. +. ....+.. +...+..+.|+|+++.++..+
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 5 7788887643 42 1233332 335678899999999888654
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=1.3e-16 Score=171.22 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=173.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCC-CCceeEEeeec-CCCEEEEEEeCCCCE--EEEEe-------------C
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQ-SQTMAKSFEVT-ELPVRSAKFVARKQW--VVAGA-------------D 77 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~ 77 (871)
...+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++ +++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3468899999999999998877 99999987 77765443321 133567899999995 44553 6
Q ss_pred CCeEEEEECC-CCcEEEEEc----cCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC-CCceE-EEEee--cCCcceEE
Q 002881 78 DMFIRVYNYN-TMDKVKVFE----AHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWE-KGWMC-TQIFE--GHSHYVMQ 147 (871)
Q Consensus 78 dg~i~iw~~~-~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~-~~~~~--~~~~~v~~ 147 (871)
+|.+.+|++. +++....+. .+...+.+++|+|+|++|++++. ++.|.+|++. ++... ...+. .|...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8999999997 465544443 24567999999999999888764 6799999998 55322 12222 23566899
Q ss_pred EEEecCCCCEEEEEEC-CCcEEEEECC--CCCCe---EEEecC-------CC------CeeEEE-EeecCCcCEEEEEeC
Q 002881 148 VTFNPKDTNTFASASL-DRTIKIWNLG--SPDPN---FTLDAH-------QK------GVNCVD-YFTGGDKPYLITGSD 207 (871)
Q Consensus 148 ~~~~p~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~~~~-------~~------~i~~i~-~~~~~~~~~l~~~~~ 207 (871)
++|+| +++.+++++. ++.|.+|++. +++.. ..+... .. .+..++ |+|+++ +++++..
T Consensus 198 ~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~--~l~v~~~ 274 (365)
T 1jof_A 198 VAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK--YMFASSR 274 (365)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS--EEEEEEE
T ss_pred eEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC--EEEEECC
Confidence 99999 7878777765 7899999875 34432 122211 11 478899 999987 5655543
Q ss_pred C-C-----eEEEEECC-CCceEE---EecCcccCeEEEEEcC---CCCEEEEEECC-CcEEEEeCCCC
Q 002881 208 D-H-----TAKVWDYQ-TKSCVQ---TLEGHTHNVSAVCFHP---ELPIIITGSED-GTVRIWHATTY 261 (871)
Q Consensus 208 d-g-----~i~v~d~~-~~~~~~---~~~~~~~~v~~i~~~p---~~~~l~~~~~d-g~v~iwd~~~~ 261 (871)
+ + .|.+|++. +++... ....+...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 2 89999986 565443 2333444567889999 89999998864 89999997655
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=1.4e-17 Score=181.31 Aligned_cols=271 Identities=9% Similarity=0.042 Sum_probs=183.6
Q ss_pred EEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 002881 18 VKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 94 (871)
+.+++|||||++|+.+... ..|.+||..+++.......+......+.|+|||++|+.++.++.|.+|++.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6788999999998887643 4788999888875543332322233478999999999999999999999998877666
Q ss_pred EccCCCCeEE-------------------EEEcCCCCEEEEE-----ECCCeEEEEECCCCceEEEEeecCCcceEEEEE
Q 002881 95 FEAHTDYIRC-------------------VAVHPTLPYVLSS-----SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF 150 (871)
Q Consensus 95 ~~~~~~~i~~-------------------i~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 150 (871)
...+...... +.|+|+++.++.+ ..+..|.+||+.++ ...... .+...+..+.|
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~~~-~~~~~~~~~~~ 195 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG-ELEVIH-QDTAWLGHPIY 195 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC-CEEEEE-EESSCEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC-cEEeec-cCCcccccceE
Confidence 6544442222 3467777766544 35678999999887 333333 45667899999
Q ss_pred ecCCCCEEEEEECC------CcEEEEECCCCCCeEEEecC--CCCeeEEEEeecCCcCEEEEEeCC-----CeEEEEECC
Q 002881 151 NPKDTNTFASASLD------RTIKIWNLGSPDPNFTLDAH--QKGVNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQ 217 (871)
Q Consensus 151 ~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~~l~~~~~d-----g~i~v~d~~ 217 (871)
+|.++..++..+.+ ..|.+||+.+++.. .+..+ ...+..+.|+|+++. |+.++.+ +.|++||+.
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSA--MAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSC--EEEEEEETTTCCEEEEEECTT
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCE--EEEEecCCCCccceEEEEECC
Confidence 99445556555543 36888998765433 22222 235778899999874 5554433 459999998
Q ss_pred CCceEEEecCcccCeEEEEEcC-CCCEEEEEE----------------CCCcEEEEeCCCCeEEEEEecCCc--------
Q 002881 218 TKSCVQTLEGHTHNVSAVCFHP-ELPIIITGS----------------EDGTVRIWHATTYRLENTLNYGLE-------- 272 (871)
Q Consensus 218 ~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~~----------------~dg~v~iwd~~~~~~~~~~~~~~~-------- 272 (871)
+++........ ... +.|+| +|+++++++ .++.|++||+.+++... +..+..
T Consensus 273 ~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~ 348 (396)
T 3c5m_A 273 TLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGD 348 (396)
T ss_dssp TCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTB
T ss_pred CCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCcccccccc
Confidence 87654332211 123 89999 999888765 24689999998876433 333322
Q ss_pred ---cEEEEEEeeCCCeEEEEEc-CCeEEE
Q 002881 273 ---RVWAIGYMKSSRRIVIGYD-EGTIMV 297 (871)
Q Consensus 273 ---~i~~i~~~~~~~~l~~g~~-dg~i~i 297 (871)
.+..++|+|+|+.|+.++. ++...+
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l 377 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFEGVPAI 377 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred ccCCCCCceEccCCCeEEEEecCCCCceE
Confidence 2566789999999888765 344333
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=4.7e-16 Score=165.78 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=188.9
Q ss_pred EEEEcCCCCEEEEEEc----------CCeEEEEeCCCCceeEEeeec------CCCEEEEEEeCCCCEEEEEeC--CCeE
Q 002881 20 SVDLHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVT------ELPVRSAKFVARKQWVVAGAD--DMFI 81 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i 81 (871)
.++|+|||++++++.. ++.|.+||..+++.+..+... ......++++|+|++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999999863 567999999999988887753 245678999999999999874 6899
Q ss_pred EEEECCCCcEEEE-EccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEE------EeecCCcceEEEEEecC
Q 002881 82 RVYNYNTMDKVKV-FEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQ------IFEGHSHYVMQVTFNPK 153 (871)
Q Consensus 82 ~iw~~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~~v~~~~~~p~ 153 (871)
.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|++........ .+..+..++ .+.++|
T Consensus 134 ~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~- 209 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPAL- 209 (361)
T ss_dssp EEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEE-
T ss_pred EEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecc-
Confidence 9999999988877 5532 2 2335677765 6778889999999999875323321 111222222 233356
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCeE--EEecC----------CCCeeEEEEeecCCcCEEEEEeC-----------CCe
Q 002881 154 DTNTFASASLDRTIKIWNLGSPDPNF--TLDAH----------QKGVNCVDYFTGGDKPYLITGSD-----------DHT 210 (871)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~----------~~~i~~i~~~~~~~~~~l~~~~~-----------dg~ 210 (871)
++..++..+.++.+.++|+....... .+... ......++++|+++. ++++.. .+.
T Consensus 210 ~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~--lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 210 DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR--MYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE--EEEEEESSCCTTCTTCCCSE
T ss_pred cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe--EEEEEccCCCcccccCCCce
Confidence 45667777788999999997654321 11110 111223678888764 444332 358
Q ss_pred EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eEEEEEecCCccEEEEEEeeCCC
Q 002881 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RLENTLNYGLERVWAIGYMKSSR 284 (871)
Q Consensus 211 i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~i~~i~~~~~~~ 284 (871)
|.+||+.+++.+.++..+. +.+++|+|+|++|++++. +.|.+||..++ +.+..+.......+.++++|+|+
T Consensus 288 v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999999999999998776 899999999999998886 99999999999 98888765557788999999986
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=2.3e-15 Score=160.41 Aligned_cols=262 Identities=10% Similarity=0.021 Sum_probs=189.3
Q ss_pred CCCEEEEEE------cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCC
Q 002881 26 SEPWILASL------YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTM 89 (871)
Q Consensus 26 ~~~~la~~~------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~ 89 (871)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|||+++++++. ++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566777654 3679999999999988888776555 8999999999999863 678999999999
Q ss_pred cEEEEEccC------CCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEE-eecCCcceEEEEEecCCCCEEEE
Q 002881 90 DKVKVFEAH------TDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQI-FEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 90 ~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
+.+..+..+ ......++++|+|++|+++.. ++.|.+||+.++ ..... +.. .. ...+.+.|.+...+++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~-~~-~~~v~~~p~~~~~~~~ 168 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAA-AG-CWSVIPQPNRPRSFMT 168 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGG-TT-EEEEEECTTSSSEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecC-CC-cceeEEcCCCCeeEEE
Confidence 888877532 345678999999999999874 589999999988 44444 332 22 2335677755678889
Q ss_pred EECCCcEEEEECCC-CCCeEEE------ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce--EEEecCc---
Q 002881 161 ASLDRTIKIWNLGS-PDPNFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTLEGH--- 228 (871)
Q Consensus 161 ~~~dg~i~i~d~~~-~~~~~~~------~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~--- 228 (871)
.+.||.+.+|++.. ++..... .....++ .+..++++. .++..+.++.|.++|+..... ...+...
T Consensus 169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~--~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD--KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS--EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred ECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC--EEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence 99999999999865 3322111 1112221 223356654 456667789999999875432 2221110
Q ss_pred -------ccCeEEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 229 -------THNVSAVCFHPELPIIITGSE-----------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 229 -------~~~v~~i~~~p~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
......++++|+++.++++.. .+.|.+||+.+++.+..+..+. +++++|+|+|++|++++
T Consensus 246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence 011113789999887777643 3479999999999999998875 99999999999999888
Q ss_pred cCCeEEEe
Q 002881 291 DEGTIMVK 298 (871)
Q Consensus 291 ~dg~i~i~ 298 (871)
. +.+.+|
T Consensus 324 ~-~~v~v~ 330 (361)
T 2oiz_A 324 G-GNVNVY 330 (361)
T ss_dssp S-SCEEEE
T ss_pred C-CeEEEE
Confidence 6 888876
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=6.4e-16 Score=182.22 Aligned_cols=231 Identities=12% Similarity=0.064 Sum_probs=164.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-----eEEEEEcCCCCEEEEEECC---------CeEE
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY-----IRCVAVHPTLPYVLSSSDD---------MLIK 124 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----i~~i~~~~~~~~l~~~~~d---------g~i~ 124 (871)
....+.|+|||++++++ ||.|++||+.+++....+..|... ...+.|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35678999999988886 899999999999988888777643 2347899999999998876 5677
Q ss_pred EEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE-ecCCCCe---------------
Q 002881 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGV--------------- 188 (871)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i--------------- 188 (871)
+||+.++ ... .+..|...+...+|+| +++.++.+. ++.|.+|++.+++..... .++...+
T Consensus 96 ~~d~~~~-~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNKR-QLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTTT-EEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCCC-cEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 9999988 333 3556777899999999 788887774 689999999877644321 1222212
Q ss_pred --eEEEEeecCCcCEEEEEeCC-C-----------------------------------eEEEEECCC---Cc--eEEEe
Q 002881 189 --NCVDYFTGGDKPYLITGSDD-H-----------------------------------TAKVWDYQT---KS--CVQTL 225 (871)
Q Consensus 189 --~~i~~~~~~~~~~l~~~~~d-g-----------------------------------~i~v~d~~~---~~--~~~~~ 225 (871)
..+.|+|+|+ .|+.++.| + .|++||+.+ ++ ....+
T Consensus 172 ~~~~~~wSpDg~--~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 172 AYSALWWSPNGT--FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSBCEEECTTSS--EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred CCcceEECCCCC--EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 3488999998 56665321 1 588899988 63 22333
Q ss_pred c------CcccCeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCCe----EE--EEE--ecCCccEE-----EEEEeeC
Q 002881 226 E------GHTHNVSAVCFHPELPIIITGSE----DGTVRIWHATTYR----LE--NTL--NYGLERVW-----AIGYMKS 282 (871)
Q Consensus 226 ~------~~~~~v~~i~~~p~~~~l~~~~~----dg~v~iwd~~~~~----~~--~~~--~~~~~~i~-----~i~~~~~ 282 (871)
. ++...+..++|+|||+.++.... +..|++||+.+++ +. ..+ ..+...+. ...|+||
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 3 26677999999999986665543 2369999998876 11 111 22333333 6889999
Q ss_pred CCeEE-EEE-cCCeEEE
Q 002881 283 SRRIV-IGY-DEGTIMV 297 (871)
Q Consensus 283 ~~~l~-~g~-~dg~i~i 297 (871)
|+.++ ..+ .+|.-.+
T Consensus 330 G~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHI 346 (740)
T ss_dssp SSEEEEEEECTTSCEEE
T ss_pred CCEEEEEEEcCCCceEE
Confidence 99887 554 4554443
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=1.8e-16 Score=185.08 Aligned_cols=273 Identities=12% Similarity=0.050 Sum_probs=195.5
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEE--EcCCeEEEEeCCCCceeEEeeecCCCEE---------EEEEe--CCCCE-EEE
Q 002881 9 RKLAQRSERVKSVDLHPSEPWILAS--LYSGTVCIWNYQSQTMAKSFEVTELPVR---------SAKFV--ARKQW-VVA 74 (871)
Q Consensus 9 ~~~~~h~~~v~~i~~s~~~~~la~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~ 74 (871)
..+.+|...+..++|++++-+++.. +.++...||....+...+.+..+...+. ...|+ |||++ |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 4566899999999999886666655 4478899999655555666776766666 66676 99998 776
Q ss_pred EeC-CCeEEEEECC--CCcEEEEEcc-----CCCCeEEEEEcCCCCEEEEEECC----------CeEEEEECCC------
Q 002881 75 GAD-DMFIRVYNYN--TMDKVKVFEA-----HTDYIRCVAVHPTLPYVLSSSDD----------MLIKLWDWEK------ 130 (871)
Q Consensus 75 ~~~-dg~i~iw~~~--~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d----------g~i~iwd~~~------ 130 (871)
++. +..|.+++.. +......+.. |...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 654 5667777765 2033445554 66778999999999999998876 5899999987
Q ss_pred CceEEEEeecCCcceEEEEEecCCCCEEEEEECC--------CcEEEEECC-CC---CCeEEEecCCCCeeEEEEeecCC
Q 002881 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD--------RTIKIWNLG-SP---DPNFTLDAHQKGVNCVDYFTGGD 198 (871)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~i~~i~~~~~~~ 198 (871)
+ ........+...+..+.|+| +++.|+.++.+ ..|.+||+. ++ +.......+...+..+.|+|+++
T Consensus 177 ~-~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 177 S-AVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp G-GSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred C-ceeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 4 33333314556788899999 88888877755 379999998 45 33333344567899999999987
Q ss_pred cCEEEEEeCCC--eEEEEECCCCceEEEecCcccC--------eEEEEEcCCCCEEEEEECCCcEEEE--eCCCCeEEEE
Q 002881 199 KPYLITGSDDH--TAKVWDYQTKSCVQTLEGHTHN--------VSAVCFHPELPIIITGSEDGTVRIW--HATTYRLENT 266 (871)
Q Consensus 199 ~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~--------v~~i~~~p~~~~l~~~~~dg~v~iw--d~~~~~~~~~ 266 (871)
+++++..++ .|.+||..+++.......+... +..++|+|++.++++++. +.+++| |..+++ ...
T Consensus 255 --l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~ 330 (662)
T 3azo_A 255 --LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD 330 (662)
T ss_dssp --EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE
T ss_pred --EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE
Confidence 777887788 6777777667655444433222 567899999999999998 999999 655555 566
Q ss_pred EecCCccEEEEEEeeCCCeEEE
Q 002881 267 LNYGLERVWAIGYMKSSRRIVI 288 (871)
Q Consensus 267 ~~~~~~~i~~i~~~~~~~~l~~ 288 (871)
+..+...+..+ |++++..++.
T Consensus 331 l~~~~~~~~~~-~s~~~~~~~~ 351 (662)
T 3azo_A 331 AAGPWTEWAAT-LTVSGTRAVG 351 (662)
T ss_dssp CCSSCCEEEEE-EEEETTEEEE
T ss_pred ecCCCCeEEEE-EecCCCEEEE
Confidence 66666666655 1455554443
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=4e-15 Score=158.49 Aligned_cols=257 Identities=12% Similarity=0.097 Sum_probs=179.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEE---------cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC---C--
Q 002881 14 RSERVKSVDLHPSEPWILASL---------YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---M-- 79 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-- 79 (871)
.-..+..+++ ||++++... .++.|.+||..+++... + ..+..+.|+|||++|+.++.+ +
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 3456788888 899888753 25679999998886543 3 468899999999999987753 3
Q ss_pred eEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC---------------------------CeEEEEECCCCc
Q 002881 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD---------------------------MLIKLWDWEKGW 132 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------------------------g~i~iwd~~~~~ 132 (871)
.|.+|++.+++.......+ . +..+.|+|+|+.|+.++.+ ..|.+||+.++.
T Consensus 86 ~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred eEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 4888898887766555433 3 9999999999999887642 579999998873
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEEECCC-------cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEE
Q 002881 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-------TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
..... .. . .+..+.|+| ++ +++++..++ ...+|.+.+++ ...+..+ ..+..+ +|+++ .++.+
T Consensus 164 ~~~~l-~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~--~l~~~ 232 (347)
T 2gop_A 164 VIEEF-EK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGE--RILLY 232 (347)
T ss_dssp EEEEE-EE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSS--CEEEE
T ss_pred EEeee-cC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCC--EEEEE
Confidence 31333 22 3 688999999 66 777776542 33444443333 3344333 444443 88887 46555
Q ss_pred eCC--------CeEEEEECCCCceEEEecCcccCeEE-EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEE
Q 002881 206 SDD--------HTAKVWDYQTKSCVQTLEGHTHNVSA-VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (871)
Q Consensus 206 ~~d--------g~i~v~d~~~~~~~~~~~~~~~~v~~-i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~ 276 (871)
+.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.+++| +.+++...... +...+.+
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~~v~~ 306 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GRHWIMG 306 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SSSEEEE
T ss_pred EccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CCCeEEe
Confidence 533 4788888 56655555556677886 9999 88 88999999999999 87666544443 4578999
Q ss_pred EEEeeCCCeEEEEEcCCeE-EEe
Q 002881 277 IGYMKSSRRIVIGYDEGTI-MVK 298 (871)
Q Consensus 277 i~~~~~~~~l~~g~~dg~i-~i~ 298 (871)
++|+| ..+++++.++.. .+|
T Consensus 307 ~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 307 FDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp EEESS--SEEEEEECSSSCCEEE
T ss_pred eeeeC--cEEEEEcCCCChHHhe
Confidence 99999 666666666543 444
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=3.3e-15 Score=157.42 Aligned_cols=241 Identities=10% Similarity=0.084 Sum_probs=183.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcC------------------------CeEEEEeCCCCceeEEee-ecCCCEEEEEEeCC
Q 002881 14 RSERVKSVDLHPSEPWILASLYS------------------------GTVCIWNYQSQTMAKSFE-VTELPVRSAKFVAR 68 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~d------------------------g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~ 68 (871)
.-+.+.+++++|+|+.+++...+ +.|.+||..+++....+. .+-..+..++++|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 35679999999999988777666 479999998898876654 23457899999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCc-EEEEE---------ccCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEECCCCceEEE
Q 002881 69 KQWVVAGADDMFIRVYNYNTMD-KVKVF---------EAHTDYIRCVAVHP-TLPYVLSSS-DDMLIKLWDWEKGWMCTQ 136 (871)
Q Consensus 69 ~~~l~~~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~i~~i~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 136 (871)
|+.+++.+.++.|++|+.+... .+..+ ..+......++++| ++..+++.+ .++.|.+||.... ...
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~--~~~ 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK--FVT 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC--EEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC--EEE
Confidence 9988888889999999976542 45555 24455789999999 777777775 6899999995433 333
Q ss_pred Eeec----------CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe--cCCCCeeEEEEeecCCcCEEEE
Q 002881 137 IFEG----------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLIT 204 (871)
Q Consensus 137 ~~~~----------~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~~ 204 (871)
.+.. +-.....++++|+.++++++...++.|++||..+++.+..+. .+...+..++++| +. .+.+
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~--~~~~ 256 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF--LFAV 256 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE--EEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE--EEEe
Confidence 3321 223478999999447778888889999999998787777763 3456678888888 21 2222
Q ss_pred -------EeCCCeEEEEECCCCceEEEec---CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 205 -------GSDDHTAKVWDYQTKSCVQTLE---GHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 205 -------~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
...+..|++|+..+++.+..+. .+...+.+++++|+|.++++...++.|++|++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 2334589999999999888873 566778999999999888888889999999864
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=2.2e-15 Score=159.50 Aligned_cols=270 Identities=9% Similarity=0.040 Sum_probs=196.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 94 (871)
+..|.++.|+|++..++....++.++.| .++....+..+...+.+++|+|+|+.++++..++.|.+||..+++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 3457888999988877776778889999 3556666666777789999999999777888899999999988876655
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCceEEEEee--cCCcceEEEEEecCCCCEEEEEEC-----
Q 002881 95 FEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASL----- 163 (871)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~----- 163 (871)
...+...+.+++|+|+++++++...+ +.|.+||.+++. ....+. .+...+..+.++| +++++++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTN 159 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTB
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECC-CCCEEEEeccccccC
Confidence 54567789999999999877776666 689999998773 332322 2345689999999 6776666543
Q ss_pred -CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-CceEEE--------ecCcccCeE
Q 002881 164 -DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQT--------LEGHTHNVS 233 (871)
Q Consensus 164 -dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~--------~~~~~~~v~ 233 (871)
.+.|..+|..+++.. .+......+..++|+|+++. ++++...++.|.+|++.+ +..+.. +.++ ..+.
T Consensus 160 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~-l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~ 236 (333)
T 2dg1_A 160 PLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKV-LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD 236 (333)
T ss_dssp CCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSE-EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred CCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCE-EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence 356666666554433 23223345788999998763 334445678999999864 332221 1112 3578
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCc------cEEEEEEeeCCCeEEEEEcCC
Q 002881 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE------RVWAIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 234 ~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~~g~~dg 293 (871)
.++++++|.++++...++.|.+||. +++....+..+.. .+.+++|+|+++.|.+++.+|
T Consensus 237 ~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred ceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 8999999998888878899999997 5666666665433 588999999988888777765
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=6e-16 Score=168.33 Aligned_cols=244 Identities=9% Similarity=-0.046 Sum_probs=165.1
Q ss_pred EEEeCCCCceeEEeeecCCC-----EEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCC
Q 002881 40 CIWNYQSQTMAKSFEVTELP-----VRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (871)
Q Consensus 40 ~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~ 111 (871)
...|..++..+..+..+... +..++|+|||++|+..... ..|.+|+..+++.......+......+.|+|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 45577788777777655433 6788999999998877553 478899998877654433333333347899999
Q ss_pred CEEEEEECCCeEEEEECCCCceEEEEeecCCcceEE-------------------EEEecCCCCEEEEE-----ECCCcE
Q 002881 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ-------------------VTFNPKDTNTFASA-----SLDRTI 167 (871)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~p~~~~~l~~~-----~~dg~i 167 (871)
++|+.++.++.|.+||+.++ ........+...... +.|+| +++.++.+ ..+..|
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETL-EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp SEEEEEETTTEEEEEETTTC-CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEE
T ss_pred CEEEEEEcCCcEEEEECCCC-CcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceE
Confidence 99999999999999999887 444444434332222 24566 44444433 356689
Q ss_pred EEEECCCCCCeEEEecCCCCeeEEEEee-cCCcCEEEEEeCC------CeEEEEECCCCceEEEecCc-ccCeEEEEEcC
Q 002881 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDD------HTAKVWDYQTKSCVQTLEGH-THNVSAVCFHP 239 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~-~~~v~~i~~~p 239 (871)
.+||+.+++..... .+...+..+.|+| ++. .++..+.+ ..|.+||+.++......... ...+..+.|+|
T Consensus 171 ~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~--~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 171 IKVDIETGELEVIH-QDTAWLGHPIYRPFDDS--TVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EEEETTTCCEEEEE-EESSCEEEEEEETTEEE--EEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred EEEECCCCcEEeec-cCCcccccceECCCCCC--EEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence 99999887654443 4567788999999 665 35544433 46899998765533322211 23578899999
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCeEEEEEecCCccEEEEEEee-CCCeEEEEEc
Q 002881 240 ELPIIITGSED-----GTVRIWHATTYRLENTLNYGLERVWAIGYMK-SSRRIVIGYD 291 (871)
Q Consensus 240 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~g~~ 291 (871)
+|+.|+.++.+ +.|++||+.+++........ ... +.|+| +|+.+++++.
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEEC
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecC
Confidence 99987776544 44999999888754433222 223 89999 9998887653
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=1.7e-14 Score=148.83 Aligned_cols=238 Identities=15% Similarity=0.187 Sum_probs=176.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeee------cCCCEEEEEEe-CCCCEEEEEeC-CCeEEEE
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV------TELPVRSAKFV-ARKQWVVAGAD-DMFIRVY 84 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~~~~~-dg~i~iw 84 (871)
++-..+.+++++|++.++++...++.|.+||.. ++....+.. +...+..++++ +++..+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455679999999999977777778999999976 666665542 23468899995 66665555533 7899999
Q ss_pred ECCCCcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee--cCCcceEEEEEecCCCCEEEEE
Q 002881 85 NYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
+ .+++.+..+. .+...+.+++++|+++.+++...++.|.+||.... . ...+. .+...+..++++| +++++++.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~-~~~~~~~~~~~~p~~i~~~~-~g~l~v~~ 181 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V-LHKFGCSKHLEFPNGVVVND-KQEIFISD 181 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E-EEEEECTTTCSSEEEEEECS-SSEEEEEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E-EEEeCCCCccCCcEEEEECC-CCCEEEEE
Confidence 9 5677776664 34467899999999987777777899999997643 3 33332 3445689999999 67777777
Q ss_pred ECCCcEEEEECCCCCCeEEEecC--CCCeeEEEEeecCCcCEEEEEeCCC-eEEEEECCCCceEEEecCcc--cCeEEEE
Q 002881 162 SLDRTIKIWNLGSPDPNFTLDAH--QKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHT--HNVSAVC 236 (871)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~--~~v~~i~ 236 (871)
+.++.|.+||.. ++....+... ...+..+++++++. ++++...++ .|.+||. +++.+..+..+. ..+.+++
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~--l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~ 257 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE--ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVA 257 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCC--EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCC--EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEE
Confidence 778999999974 4445555433 25678999998875 677776675 9999995 466666665443 3478999
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCC
Q 002881 237 FHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 237 ~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
++|+|.++++ +.|+.|++|+...
T Consensus 258 ~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 258 LMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EETTTEEEEE-ETTTEEEEEECSC
T ss_pred ECCCCcEEEE-CCCCeEEEEEccc
Confidence 9999986666 6799999999754
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=9.7e-15 Score=153.86 Aligned_cols=239 Identities=11% Similarity=0.047 Sum_probs=182.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCC------------------------CeEEEEECCCCcEEEEEc-cCCCCeEEEEEcCCC
Q 002881 57 ELPVRSAKFVARKQWVVAGADD------------------------MFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTL 111 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~-~~~~~i~~i~~~~~~ 111 (871)
-+.+.+++++|+|+.+++...+ +.|.+||..+++....+. .+...+..++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999988888776 479999999898877665 455678999999999
Q ss_pred CEEEEEECCCeEEEEECCCCceEEEEe---------ecCCcceEEEEEecCCCCEEEEEE-CCCcEEEEECCCCCCeEEE
Q 002881 112 PYVLSSSDDMLIKLWDWEKGWMCTQIF---------EGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSPDPNFTL 181 (871)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 181 (871)
+.+++.+.++.|.+||..........+ ..+-.....++++|++++++++.+ .++.|.+|+. .++....+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEe
Confidence 988888888999999987542233333 234446899999996677777775 6899999994 55555555
Q ss_pred ecCC----------CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEE--
Q 002881 182 DAHQ----------KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHPELPIIITG-- 247 (871)
Q Consensus 182 ~~~~----------~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~-- 247 (871)
.... .....++++|++.. ++++...++.|++|+..+++.+..+. .+...+.+++++| +..+.+.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~-l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQ-LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTE-EEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCE-EEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 3222 23789999987332 67777788999999998888888774 3556788999999 4333333
Q ss_pred -----ECCCcEEEEeCCCCeEEEEEe---cCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 248 -----SEDGTVRIWHATTYRLENTLN---YGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 248 -----~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+.+..|++|+..+++.+..+. .+...+..++++|+|..+++...++.|.+|
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 334589999999999888874 455678999999999877777888888775
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=2e-14 Score=168.64 Aligned_cols=245 Identities=9% Similarity=0.016 Sum_probs=177.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCe-------
Q 002881 13 QRSERVKSVDLHPSEPWILASLYSG-----TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMF------- 80 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 80 (871)
+|...+.+++|||||++||.+..++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445689999999999999876533 8999999999876643222 23678999999999999988765
Q ss_pred ---------EEEEECCCCcE--EEEEc--cCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCC------CceEEE
Q 002881 81 ---------IRVYNYNTMDK--VKVFE--AHTDYIRCVAVHPTLPYVLSSSD-----DMLIKLWDWEK------GWMCTQ 136 (871)
Q Consensus 81 ---------i~iw~~~~~~~--~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~~~~~ 136 (871)
|++|++.++.. ...+. .|...+..+.|+|+|++|+.++. +..|.+||+.+ +.....
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999988762 22333 35566889999999999988765 56899999976 422234
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEECC----CcEEEEECCCCCC--eEEEecCCC--CeeEEEEeecCCcCEEEEEeCC
Q 002881 137 IFEGHSHYVMQVTFNPKDTNTFASASLD----RTIKIWNLGSPDP--NFTLDAHQK--GVNCVDYFTGGDKPYLITGSDD 208 (871)
Q Consensus 137 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~--~i~~i~~~~~~~~~~l~~~~~d 208 (871)
.+..+...+.. .|+| +++.|+..+.. +.|.+||+.++.. ...+..+.. .+..+.|++++. ++++...+
T Consensus 281 ~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--lv~~~~~~ 356 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF--LVLCYLHD 356 (710)
T ss_dssp EEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE--EEEEEEET
T ss_pred EeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE--EEEEEEEC
Confidence 44455555554 4788 56666555543 3699999987652 344444443 577788875443 67777778
Q ss_pred Ce--EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCCe
Q 002881 209 HT--AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG-S---EDGTVRIWHATTYR 262 (871)
Q Consensus 209 g~--i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~-~---~dg~v~iwd~~~~~ 262 (871)
+. |.+|++.+++.+..+..+...+..+.++|+++.++.. + ..++|+.||+.+++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 74 6677876788777887777788899999998766543 2 34789999998776
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=3.9e-13 Score=150.32 Aligned_cols=261 Identities=10% Similarity=0.046 Sum_probs=185.4
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC--CCcEEEEEccCCCCe
Q 002881 25 PSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN--TMDKVKVFEAHTDYI 102 (871)
Q Consensus 25 ~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i 102 (871)
|.+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+.... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 33344555566899999999999999888744 356799999999999999999999999995 888888776533 46
Q ss_pred EEEEEc----CCCCEEEEEEC-CCeEEEEECCCCceEEEEeec---------C-CcceEEEEEecCCCCEEEEEECCCcE
Q 002881 103 RCVAVH----PTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEG---------H-SHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 103 ~~i~~~----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
..++|+ |+|+++++++. ++.|.++|..+......+... | ...+..+..++.+...++....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 789999 69999887765 599999999887444332211 1 22577888888555566666677999
Q ss_pred EEEECCCCCCeEEE-ecCCCCeeEEEEeecCCcCEEEE-EeCCCeEEEEECCCCceEEEecC-----cccCeEEEEEcCC
Q 002881 168 KIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWDYQTKSCVQTLEG-----HTHNVSAVCFHPE 240 (871)
Q Consensus 168 ~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~-----~~~~v~~i~~~p~ 240 (871)
.++|....+..... .........+.|+|+++ ++++ ...++.|.++|+.+++.+..+.. |.+.-..+ ++|+
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr--~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~ 399 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHR--YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPT 399 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSC--EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETT
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCC--EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCC
Confidence 99998765422211 12334567888999887 5544 45678999999999987766653 22211122 5887
Q ss_pred CCEE-EEEE-CCCcEEEEeCCC-------CeEEEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 241 LPII-ITGS-EDGTVRIWHATT-------YRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 241 ~~~l-~~~~-~dg~v~iwd~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
+..+ +++. .++.|.++|..+ ++.+.++......-..+..+|+++++.+..
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 5444 4443 468999999887 667777775533334466788888777655
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=2.7e-15 Score=175.19 Aligned_cols=250 Identities=9% Similarity=0.055 Sum_probs=171.6
Q ss_pred hcccCCCCEE---------EEEEc--CCCCE-EEEEEc-CCeEEEEeCC--C-CceeEEeee-----cCCCEEEEEEeCC
Q 002881 10 KLAQRSERVK---------SVDLH--PSEPW-ILASLY-SGTVCIWNYQ--S-QTMAKSFEV-----TELPVRSAKFVAR 68 (871)
Q Consensus 10 ~~~~h~~~v~---------~i~~s--~~~~~-la~~~~-dg~v~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~ 68 (871)
.+..|...+. ...|+ |||++ |+.++. +..|.+++.. + + ....+.. |...+..++|+||
T Consensus 62 ~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 62 SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEETT
T ss_pred eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-CCEeccCCccCCCCccccCcEECCC
Confidence 4555655555 66666 99998 777654 5667777765 2 4 3445554 5667899999999
Q ss_pred CCEEEEEeCC----------CeEEEEECCC------CcEEEEEc-cCCCCeEEEEEcCCCCEEEEEECC--------CeE
Q 002881 69 KQWVVAGADD----------MFIRVYNYNT------MDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDD--------MLI 123 (871)
Q Consensus 69 ~~~l~~~~~d----------g~i~iw~~~~------~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d--------g~i 123 (871)
|+.|++++.+ ..|.+|++.+ ++. ..+. .+...+..++|||||++|+.++.+ ..|
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 9999998876 5899999987 544 4555 566778889999999999988755 379
Q ss_pred EEEECC-CC--ceEEEEeecCCcceEEEEEecCCCCEEEEEECCC--cEEEEECCCCCCeEEEecCCCC--------eeE
Q 002881 124 KLWDWE-KG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR--TIKIWNLGSPDPNFTLDAHQKG--------VNC 190 (871)
Q Consensus 124 ~iwd~~-~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~--------i~~ 190 (871)
.+||+. ++ .........|...+..+.|+| +++++++++.++ .|.+||+.+++.......+... +..
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 999998 44 144455555677899999999 666888888888 5666666555433222222111 456
Q ss_pred EEEeecCCcCEEEEEeCCCeEEEE--ECCCCceEEEecCcccCeEEE-EEcCCCCEEEEEECCC--cEEEEeCCCCeEEE
Q 002881 191 VDYFTGGDKPYLITGSDDHTAKVW--DYQTKSCVQTLEGHTHNVSAV-CFHPELPIIITGSEDG--TVRIWHATTYRLEN 265 (871)
Q Consensus 191 i~~~~~~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~~~~~v~~i-~~~p~~~~l~~~~~dg--~v~iwd~~~~~~~~ 265 (871)
+++++++. +++++.. +.+++| |..+++ +..+..+...+..+ +++++.-++++++.+. .|..+|+.+++...
T Consensus 299 ~~~~~~~~--~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 299 FAPLANGL--IAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EEECTTSC--EEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EeEeCCCE--EEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 77877766 7888887 888888 655454 67777777777776 5544433444445443 46666777776544
Q ss_pred E
Q 002881 266 T 266 (871)
Q Consensus 266 ~ 266 (871)
.
T Consensus 375 l 375 (662)
T 3azo_A 375 I 375 (662)
T ss_dssp E
T ss_pred e
Confidence 3
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=7.7e-13 Score=137.33 Aligned_cols=276 Identities=7% Similarity=-0.037 Sum_probs=193.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEe-eecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
+..+...+.+++++|+|...++...++.|.+||.. +...... ..+...+.+++++++|...++...++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34456789999999999866655557899999987 5543322 2245679999999999977777768899999976 3
Q ss_pred cEEEEEc--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 90 DKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 90 ~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
+. ..+. .....+..+++.+++...++...++.|..||. ++.........+...+..++++| ++++.++...++.|
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAI 164 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEE
T ss_pred cE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEE
Confidence 33 2232 34567899999999987777767889999998 44233223333456689999998 67777766667899
Q ss_pred EEEECCCCCCeEE-EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEE-ecCcccCeEEEEEcCCCCEEE
Q 002881 168 KIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT-LEGHTHNVSAVCFHPELPIII 245 (871)
Q Consensus 168 ~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~i~~~p~~~~l~ 245 (871)
..||. +++.... .......+..+.+.+++. +.++...++.|.+||. +++.... ...+...+.+++++++|.+.+
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDA--LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSS--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCC--EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence 99998 5543322 223345677888888765 5555556789999998 6654332 333456789999999998766
Q ss_pred EEECCCcEEEEeCCCCeEEEE-EecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 246 TGSEDGTVRIWHATTYRLENT-LNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
+...++.|..||. +++.... +..+...+.++++ +++...++...++.+++
T Consensus 241 ~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 241 TEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp EETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred eccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 6657789999997 4553322 2333467889999 88776665554555544
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=2e-13 Score=140.82 Aligned_cols=235 Identities=13% Similarity=0.158 Sum_probs=173.3
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc------cCCCCeEEEEEc-CCCCEEEEEEC-CCeEEEEE
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE------AHTDYIRCVAVH-PTLPYVLSSSD-DMLIKLWD 127 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~~~~i~~i~~~-~~~~~l~~~~~-dg~i~iwd 127 (871)
+-..+.++++++++..+++.+.++.|.+||.+ ++....+. .+...+..++++ +++..+++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 33568999999999988888889999999987 56666664 234578999994 66655555433 78999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEe--cCCCCeeEEEEeecCCcCEEEEE
Q 002881 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~~~ 205 (871)
.. +.........+...+..++++| +++++++...++.|.+||.. ++....+. .+...+..++++++++ ++++.
T Consensus 107 ~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~ 181 (286)
T 1q7f_A 107 QY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE--IFISD 181 (286)
T ss_dssp TT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE--EEEEE
T ss_pred CC-CcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC--EEEEE
Confidence 44 4233333233445689999999 67777777778999999964 44444443 3345688999998875 66777
Q ss_pred eCCCeEEEEECCCCceEEEecCc--ccCeEEEEEcCCCCEEEEEECCC-cEEEEeCCCCeEEEEEecCC--ccEEEEEEe
Q 002881 206 SDDHTAKVWDYQTKSCVQTLEGH--THNVSAVCFHPELPIIITGSEDG-TVRIWHATTYRLENTLNYGL--ERVWAIGYM 280 (871)
Q Consensus 206 ~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~i~~~p~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~--~~i~~i~~~ 280 (871)
..++.|.+||.. ++.+..+..+ ...+..++++|+|.++++...++ .|.+|+. +++.+..+..+. ..+.+++++
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM 259 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence 778999999974 6666666433 35789999999999888887776 9999995 566666665543 347899999
Q ss_pred eCCCeEEEEEcCCeEEEec
Q 002881 281 KSSRRIVIGYDEGTIMVKI 299 (871)
Q Consensus 281 ~~~~~l~~g~~dg~i~i~~ 299 (871)
|+|+.+++ +.++.|.+|.
T Consensus 260 ~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 260 DDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp TTTEEEEE-ETTTEEEEEE
T ss_pred CCCcEEEE-CCCCeEEEEE
Confidence 99986665 6788998873
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.64 E-value=1e-13 Score=162.57 Aligned_cols=263 Identities=8% Similarity=-0.002 Sum_probs=184.4
Q ss_pred CCCCEEEEEEcCC-----eEEEEeCCCCceeEEeee------cCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCC
Q 002881 25 PSEPWILASLYSG-----TVCIWNYQSQTMAKSFEV------TELPVRSAKFVARKQWVVAGADDM-----FIRVYNYNT 88 (871)
Q Consensus 25 ~~~~~la~~~~dg-----~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~ 88 (871)
|+|++++....++ .+.+.+..+++....+.. +...+..++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8999888765432 345555444444333321 223588999999999999876643 899999999
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCe----------------EEEEECCCCceE-EEEee--cCCcceEEEE
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML----------------IKLWDWEKGWMC-TQIFE--GHSHYVMQVT 149 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~-~~~~~--~~~~~v~~~~ 149 (871)
++.......+ ..+..++|+|||+.|+.++.++. |++|++.++... ..++. .|...+..+.
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 9876543222 22677999999999999988766 999999887421 22223 2455688999
Q ss_pred EecCCCCEEEEEEC-----CCcEEEEECCC------CC-CeEEEecCCCCeeEEEEeecCCcCEEEEEeC----CCeEEE
Q 002881 150 FNPKDTNTFASASL-----DRTIKIWNLGS------PD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSD----DHTAKV 213 (871)
Q Consensus 150 ~~p~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~----dg~i~v 213 (871)
|+| ++++++.++. +..|.+||+.+ +. ....+..+...+.. .|+++++. ++..+. .+.|.+
T Consensus 240 ~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~--l~~~s~~~~~~~~l~~ 315 (710)
T 2xdw_A 240 LSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTV--FTFKTNRHSPNYRLIN 315 (710)
T ss_dssp ECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTE--EEEEECTTCTTCEEEE
T ss_pred EcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCE--EEEEECCCCCCCEEEE
Confidence 999 7777777664 56899999976 43 35566666655554 48888874 444443 347999
Q ss_pred EECCCCc--eEEEecCccc--CeEEEEEcCCCCEEEEEECCCc--EEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEE
Q 002881 214 WDYQTKS--CVQTLEGHTH--NVSAVCFHPELPIIITGSEDGT--VRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (871)
Q Consensus 214 ~d~~~~~--~~~~~~~~~~--~v~~i~~~p~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 287 (871)
||+.++. ....+..+.. .+..++|++++.++++...|+. |.+|++.+++....+..+.+.+..++++|+++.++
T Consensus 316 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 316 IDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp EETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred EeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 9998764 2334444433 5788999988888888888884 66678767887777877777888999999998777
Q ss_pred EEEcC
Q 002881 288 IGYDE 292 (871)
Q Consensus 288 ~g~~d 292 (871)
....+
T Consensus 396 ~~~ss 400 (710)
T 2xdw_A 396 YQFTS 400 (710)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 65443
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=1.5e-13 Score=142.42 Aligned_cols=239 Identities=7% Similarity=-0.017 Sum_probs=176.7
Q ss_pred ceeEEeeecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iw 126 (871)
..+..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+..+...+.+++++|+|.++++...++.|.+|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 34445555566788999999998 7778888999999999887 56666777889999999999977776667899999
Q ss_pred ECCCCceEEEEeecC----CcceEEEEEecCCCCEEEEE----E-------------CCCcEEEEECCCCCCeEEEecCC
Q 002881 127 DWEKGWMCTQIFEGH----SHYVMQVTFNPKDTNTFASA----S-------------LDRTIKIWNLGSPDPNFTLDAHQ 185 (871)
Q Consensus 127 d~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~ 185 (871)
|..++. ........ ...+..++++| +++++++. + ..+.|..++.. + ....+..+.
T Consensus 96 d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGE-WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLSAPIRDR 171 (296)
T ss_dssp CSTTCC-EEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEEEEECCC
T ss_pred cCCCCc-EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEEEeecCC
Confidence 997763 33332211 12456799999 77777763 2 13456666654 3 344455566
Q ss_pred CCeeEEEEeecCCcCEEEEEeCCCeEEEEECC-CCce---EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 002881 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSC---VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261 (871)
Q Consensus 186 ~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~ 261 (871)
...+.++|+|+++ .+++.+.++.|.+|++. ++.. ...+..+...+.+++++++|.+.++. ++.|.+|+.. +
T Consensus 172 ~~~~gi~~s~dg~--~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 172 VKPNGLAFLPSGN--LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp SSEEEEEECTTSC--EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred CCCccEEECCCCC--EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence 6778999999987 56777778999999986 4544 23333345556789999999866665 7899999976 7
Q ss_pred eEEEEEecCCccEEEEEE-eeCCCeEEEEEcCCeEEEe
Q 002881 262 RLENTLNYGLERVWAIGY-MKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 262 ~~~~~~~~~~~~i~~i~~-~~~~~~l~~g~~dg~i~i~ 298 (871)
+....+..+.. +.+++| +|+++.|.+++.++..++.
T Consensus 247 ~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 247 DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 77777777766 889999 5899999999988877764
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=1.8e-12 Score=144.99 Aligned_cols=281 Identities=13% Similarity=0.120 Sum_probs=202.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCC--CCceeEEeeecCCCEEEEEEe----CCCCEEEEEeC-CCeEEEEECC
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQ--SQTMAKSFEVTELPVRSAKFV----ARKQWVVAGAD-DMFIRVYNYN 87 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~iw~~~ 87 (871)
...+..+.|||||+++++++.++.|.+||+. +++.+..+.... ....++|+ |||+++++++. +++|.++|..
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 3467799999999999999999999999995 788888777543 46799999 69999988876 6899999999
Q ss_pred CCcEEEEEcc----------CCC-CeEEEEEcCCCCEEE-EEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCC
Q 002881 88 TMDKVKVFEA----------HTD-YIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDT 155 (871)
Q Consensus 88 ~~~~~~~~~~----------~~~-~i~~i~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 155 (871)
+.+.+..+.. |.. .+..+..+++++.++ ....+|.|.++|....................+.|+| ++
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dg 353 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SH 353 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TS
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CC
Confidence 9998887652 112 678889999876554 4455799999998865322222223344577889999 67
Q ss_pred CEEEEEE-CCCcEEEEECCCCCCeEEEec-CCCC--eeEEE-EeecCCcCEEEEEe-CCCeEEEEECCC-------CceE
Q 002881 156 NTFASAS-LDRTIKIWNLGSPDPNFTLDA-HQKG--VNCVD-YFTGGDKPYLITGS-DDHTAKVWDYQT-------KSCV 222 (871)
Q Consensus 156 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~--i~~i~-~~~~~~~~~l~~~~-~dg~i~v~d~~~-------~~~~ 222 (871)
++++++. .++.|.++|+.+++....+.. ...+ -.... ++|++. ++.+++. .++.|.++|..+ .+.+
T Consensus 354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g-~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC-cEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 7766555 678999999998876665544 2111 11223 355543 2555554 468999999987 5677
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCC-----e-EEEEEec--------CCccEEEEEEee
Q 002881 223 QTLEGHTHNVSAVCFHPELPIIITGSE-------DGTVRIWHATTY-----R-LENTLNY--------GLERVWAIGYMK 281 (871)
Q Consensus 223 ~~~~~~~~~v~~i~~~p~~~~l~~~~~-------dg~v~iwd~~~~-----~-~~~~~~~--------~~~~i~~i~~~~ 281 (871)
.++......-..+..+|+++++.+... .++|.++|+.+. . ....+.. ...+++.+.|+|
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 887765444455789999999988763 358999998876 2 1133321 246899999999
Q ss_pred CCCeEEEEEc-----CCeEEEe
Q 002881 282 SSRRIVIGYD-----EGTIMVK 298 (871)
Q Consensus 282 ~~~~l~~g~~-----dg~i~i~ 298 (871)
+|+.+.++.. ++.|.+.
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~ 534 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVV 534 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEE
T ss_pred CCCEEEEEeecCCCCCCcEEEE
Confidence 9999887643 5666653
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=9.3e-14 Score=144.10 Aligned_cols=240 Identities=10% Similarity=0.050 Sum_probs=176.5
Q ss_pred cccCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002881 11 LAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
+..+.....+++|+|+++ .++++..++.|..|+..++ ...+..+...+.+++++|+|+++++...++.|.+||..++
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 445566788999999998 6677777899999998877 5667767788999999999998777767789999999888
Q ss_pred cEEEEEccC----CCCeEEEEEcCCCCEEEEE----E-------------CCCeEEEEECCCCceEEEEeecCCcceEEE
Q 002881 90 DKVKVFEAH----TDYIRCVAVHPTLPYVLSS----S-------------DDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (871)
Q Consensus 90 ~~~~~~~~~----~~~i~~i~~~~~~~~l~~~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 148 (871)
+........ ...+..++++|+|+++++. + ..+.|..++.. + .. ..+..+......+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~-~~~~~~~~~~~gi 177 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TL-SAPIRDRVKPNGL 177 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CE-EEEECCCSSEEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CE-EEeecCCCCCccE
Confidence 765443321 2346789999999988773 2 13456666655 3 33 3334555667899
Q ss_pred EEecCCCCEEEEEECCCcEEEEECC-CCCC---eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEE
Q 002881 149 TFNPKDTNTFASASLDRTIKIWNLG-SPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224 (871)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 224 (871)
+|+| +++.+++.+.++.|.+|++. .++. ...+..+...+..+++.+++. +.++. ++.|.+||.. ++.+..
T Consensus 178 ~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~---l~v~~-~~~v~~~~~~-g~~~~~ 251 (296)
T 3e5z_A 178 AFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL---IWASA-GDGVHVLTPD-GDELGR 251 (296)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC---EEEEE-TTEEEEECTT-SCEEEE
T ss_pred EECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC---EEEEc-CCeEEEECCC-CCEEEE
Confidence 9999 77777777778999999986 3433 223333445567889988886 44444 8899999986 777777
Q ss_pred ecCcccCeEEEEE-cCCCCEEEEEECCCcEEEEeCCCCeE
Q 002881 225 LEGHTHNVSAVCF-HPELPIIITGSEDGTVRIWHATTYRL 263 (871)
Q Consensus 225 ~~~~~~~v~~i~~-~p~~~~l~~~~~dg~v~iwd~~~~~~ 263 (871)
+..+.. +++++| .|+++.|++++.+ .+.-++..+.++
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 777766 899999 5899889888875 455667666554
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=9.6e-14 Score=147.78 Aligned_cols=225 Identities=12% Similarity=0.127 Sum_probs=156.2
Q ss_pred CCEEEEEEcCCCCEEEEEEcC---C--eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC------------
Q 002881 16 ERVKSVDLHPSEPWILASLYS---G--TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------------ 78 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~d---g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 78 (871)
..+.+++|||||++|+.++.+ + .|.+|++.+++.......+ . +..+.|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999999987653 3 4888888887766554433 4 9999999999999988642
Q ss_pred ---------------CeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC-------eEEEEECCCCceEEE
Q 002881 79 ---------------MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-------LIKLWDWEKGWMCTQ 136 (871)
Q Consensus 79 ---------------g~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~ 136 (871)
..|.+|++.+++.+..+.. . .+..+.|+|+| .+++++.++ ...||.++++ ....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEE
Confidence 5799999998877455544 3 78899999999 777776542 3344444344 4443
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEECC--------CcEEEEECCCCCCeEEEecCCCCeeE-EEEeecCCcCEEEEEeC
Q 002881 137 IFEGHSHYVMQVTFNPKDTNTFASASLD--------RTIKIWNLGSPDPNFTLDAHQKGVNC-VDYFTGGDKPYLITGSD 207 (871)
Q Consensus 137 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~-i~~~~~~~~~~l~~~~~ 207 (871)
... + ..+..+ +| +++.++.++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++.
T Consensus 213 l~~-~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg---~~~~~~~ 281 (347)
T 2gop_A 213 MFE-K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK---VYFTLFE 281 (347)
T ss_dssp EEE-E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE---EEEEEEE
T ss_pred ecc-C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc---EEEEEec
Confidence 333 3 445544 88 67777666643 3688888 44433333344566775 8887 43 7888899
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcE-EEEeCCCCe
Q 002881 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTV-RIWHATTYR 262 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v-~iwd~~~~~ 262 (871)
++.+++| +.+++..... .+...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 282 ~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 282 EGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp TTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred CCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 9999999 8766654433 4577899999999 677777777664 666655 44
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=6.5e-13 Score=135.10 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=179.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEccCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC-Ccce
Q 002881 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYV 145 (871)
Q Consensus 68 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v 145 (871)
.++.|++++.++.|.+||.++++.+..+..+. ..+.++.++|+|+.++ +.++.|..||. ++ .....+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G-~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG-RELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS-CEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC-CEEEEEcCCCCccc
Confidence 45789999999999999999999999998766 4789999999999888 45778999998 56 344444443 3568
Q ss_pred EEEEEecCCCCEEEEEEC-CCcEEEEECCCCCCeEEEecC------CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC
Q 002881 146 MQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPNFTLDAH------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
.++.+.| +++++++.+. ++.|..+|. +++.+..+... ......+...++++ ++++...++.|..||..
T Consensus 80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~--~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN--YLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC--EEEEETTTTEEEEECTT-
T ss_pred cccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC--EEEEecCCCEEEEECCC-
Confidence 8899999 8889998887 788888886 56655555321 12344556666666 88899999999999988
Q ss_pred CceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCC------ccEEEEEEeeCCCeEEEEEcC
Q 002881 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL------ERVWAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 219 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~i~~i~~~~~~~~l~~g~~d 292 (871)
|+.+.++... ..+.++...++++++++++.++.|..+|..+|+.+..+.... ..+..+...++|+.+++.+..
T Consensus 155 G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 155 GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 9999888754 345677889999999999888899999999999999886432 237788888899877776422
Q ss_pred CeEEEecCCCcceEEEeCCCcEEEEee
Q 002881 293 GTIMVKIGREEPVASMDNSGKIIWAKH 319 (871)
Q Consensus 293 g~i~i~~~~~~~~~~~~~~~~~~~~~~ 319 (871)
....-.......++.++++|+++|...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred ccccccccCCceEEEECCCCCEEEEec
Confidence 110000001223456778888888754
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=1.1e-12 Score=133.54 Aligned_cols=236 Identities=8% Similarity=0.027 Sum_probs=180.3
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCceeEEeeecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCC-CCeE
Q 002881 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIR 103 (871)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~ 103 (871)
.++.|++++.++.|.+||.++|+.+..+..+. ..+.++.++|+|+.++ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 35678888899999999998999999998765 4789999999999888 45778999998 899999888653 4788
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEEe-e----cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC
Q 002881 104 CVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIF-E----GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177 (871)
Q Consensus 104 ~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~----~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 177 (871)
++.+.++|+.+++.+. ++.|..+|.... .+...- . .+......+...+ +++++++.+.++.|..||.. ++.
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk-~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNMKGE-VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECTTSC-EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeCCCC-EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCE
Confidence 9999999999999887 788888886433 332221 1 1112344566777 78999999999999999997 888
Q ss_pred eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc------cCeEEEEEcCCCCEEEEEECC-
Q 002881 178 NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------HNVSAVCFHPELPIIITGSED- 250 (871)
Q Consensus 178 ~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~v~~i~~~p~~~~l~~~~~d- 250 (871)
+.++... ..+.++...++++ ++++++.++.|..+|..+++.+..+..+. ..+.++...++|.++++.+..
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~--~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~ 234 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGD--CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH 234 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSC--EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred EEEEECC-CCccceeEcCCCC--EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence 8887754 3455666677666 78888888899999999999998886432 227889999999988887421
Q ss_pred -------CcEEEEeC-CCCeEEEEEecC
Q 002881 251 -------GTVRIWHA-TTYRLENTLNYG 270 (871)
Q Consensus 251 -------g~v~iwd~-~~~~~~~~~~~~ 270 (871)
+..+++.+ .+++.+.++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 235 DREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp CTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred cccccccCCceEEEECCCCCEEEEecCc
Confidence 12244444 578888777654
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=1.7e-12 Score=137.17 Aligned_cols=235 Identities=9% Similarity=0.055 Sum_probs=167.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC----CeEEEEEC
Q 002881 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----MFIRVYNY 86 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~ 86 (871)
+..+...+.+++|+|+|..++++..++.|.+||..+++.......+...+.+++|+|+|+.+++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 44566678999999999977777778999999998887665554566789999999999987777666 68999999
Q ss_pred CCCcEEEEEc--cCCCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 87 NTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSD------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 87 ~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
+++.....+. .+...+.+++++|+|..+++... .+.|..+|..++ ...... .+...+..++|+| +++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~~~~~~~i~~~~-dg~~l 196 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPII-QNISVANGIALST-DEKVL 196 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEE-EEESSEEEEEECT-TSSEE
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC-EEEEee-cCCCcccceEECC-CCCEE
Confidence 8876554443 34557899999999987766543 356777776654 232222 2334578899999 66655
Q ss_pred -EEEECCCcEEEEECCC-CCCeEEE-----ecC--CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc
Q 002881 159 -ASASLDRTIKIWNLGS-PDPNFTL-----DAH--QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (871)
Q Consensus 159 -~~~~~dg~i~i~d~~~-~~~~~~~-----~~~--~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 229 (871)
++.+.++.|.+||+.+ +.....+ ... ...+..+++++++. ++++...++.|.+||. +++.+..+..+.
T Consensus 197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~v~~~d~-~g~~~~~~~~~~ 273 (333)
T 2dg1_A 197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN--LYVAMYGQGRVLVFNK-RGYPIGQILIPG 273 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC--EEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC--EEEEEcCCCEEEEECC-CCCEEEEEEcCC
Confidence 4555678999999964 3322211 111 13567888888776 6666667889999998 466666665443
Q ss_pred c------CeEEEEEcCCCCEEEEEECCC
Q 002881 230 H------NVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 230 ~------~v~~i~~~p~~~~l~~~~~dg 251 (871)
. .+.+++|+|++..|++++.++
T Consensus 274 ~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 274 RDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CccccccCcceEEECCCCCEEEEEeCcc
Confidence 3 588999999987777666554
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=1.1e-13 Score=161.91 Aligned_cols=278 Identities=8% Similarity=-0.063 Sum_probs=181.7
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCceeEEee------ecCCCEEEEEEeCCCCEEEE
Q 002881 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSG-----TVCIWNYQSQTMAKSFE------VTELPVRSAKFVARKQWVVA 74 (871)
Q Consensus 6 ~~~~~~~~h~~~v~~i~~s~~~~~la~~~~dg-----~v~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~ 74 (871)
.+...+...-..-..-..+|+|++++....++ .+.+.+...+.....+. .|...+..++|||||++|+.
T Consensus 58 ~l~~~~~~~~~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~ 137 (695)
T 2bkl_A 58 ALAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAF 137 (695)
T ss_dssp HHHHHHHHHHSCCEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEE
T ss_pred HHHHHHHHhhccccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEE
Confidence 34444443333222233448999988776543 34444544554433332 23346899999999999994
Q ss_pred E-----eCCCeEEEEECCCCcEEEEEccCCCCe--EEEEEcCCCCEEEEEECCCe-------------EEEEECCCCce-
Q 002881 75 G-----ADDMFIRVYNYNTMDKVKVFEAHTDYI--RCVAVHPTLPYVLSSSDDML-------------IKLWDWEKGWM- 133 (871)
Q Consensus 75 ~-----~~dg~i~iw~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~- 133 (871)
+ +.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.++..
T Consensus 138 ~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~ 215 (695)
T 2bkl_A 138 AQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK 215 (695)
T ss_dssp EEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG
T ss_pred EECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh
Confidence 4 345689999999987641 1111222 67999999999999988776 99999988742
Q ss_pred --EEEEeecCCcceEEEEEecCCCCEEEEEECCC----cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEe-
Q 002881 134 --CTQIFEGHSHYVMQVTFNPKDTNTFASASLDR----TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS- 206 (871)
Q Consensus 134 --~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~- 206 (871)
+......+...+.++.|+| ++++++.++.++ .|.+++..++. ...+..+...+....+ ++++ +++.+.
T Consensus 216 ~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~--l~~~s~~ 290 (695)
T 2bkl_A 216 DTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR--FYVLTDE 290 (695)
T ss_dssp CEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE--EEEEECT
T ss_pred ceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc--EEEEECC
Confidence 2222233556789999999 677777766555 67777665544 4445555555556555 5554 455544
Q ss_pred --CCCeEEEEECCCCce---EEEecCc-ccCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEEecC-CccEEEEE
Q 002881 207 --DDHTAKVWDYQTKSC---VQTLEGH-THNVSAVCFHPELPIIITGSEDGTVRIWHAT-TYRLENTLNYG-LERVWAIG 278 (871)
Q Consensus 207 --~dg~i~v~d~~~~~~---~~~~~~~-~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~-~~~i~~i~ 278 (871)
.++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++...|+..++|.+. +++....+..+ .+.+..++
T Consensus 291 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~ 369 (695)
T 2bkl_A 291 GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLM 369 (695)
T ss_dssp TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCB
T ss_pred CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEee
Confidence 358999999987653 3333333 4457888888 66788888999988887554 35555666554 56677888
Q ss_pred EeeCCCeEEEEEc
Q 002881 279 YMKSSRRIVIGYD 291 (871)
Q Consensus 279 ~~~~~~~l~~g~~ 291 (871)
++|+++.++....
T Consensus 370 ~s~d~~~l~~~~s 382 (695)
T 2bkl_A 370 GLEDLDDAYYVFT 382 (695)
T ss_dssp SCTTCSEEEEEEE
T ss_pred cCCCCCEEEEEEc
Confidence 8999888776544
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=2.2e-13 Score=139.15 Aligned_cols=240 Identities=8% Similarity=-0.058 Sum_probs=167.8
Q ss_pred CEEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 17 RVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 17 ~v~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
...+++++|+|..++ +...++.|.+|+..++........+...+.+++++++|+.+++.. ++.|.+|+..+... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 788999999998555 335678999999765543222122335678999999999555555 88999999876543 333
Q ss_pred c-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 96 E-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 96 ~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
. .....+..++++++|..+++...++.|.+|+..+... ..........+..++++| +++++++...++.|.+||..+
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTT
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCC
Confidence 2 3336789999999998777767788999998665422 222222334578899999 677777777788999999876
Q ss_pred CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEE
Q 002881 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (871)
Q Consensus 175 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~ 254 (871)
.............+..+++.+++. ++++...++.|.+|+..+.........+...+.+++++|+|.++++.+.++.|+
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~--l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGT--VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCC--EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred CceEeecccCCCCceEEEECCCCC--EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 553332223335678899988774 666666788999999876544332223335689999999999888888899999
Q ss_pred EEeCCCCe
Q 002881 255 IWHATTYR 262 (871)
Q Consensus 255 iwd~~~~~ 262 (871)
+++....+
T Consensus 259 ~~~~~~~~ 266 (270)
T 1rwi_B 259 KLTSLEHH 266 (270)
T ss_dssp EECCCGGG
T ss_pred EEcCCCcc
Confidence 99976543
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=1.3e-11 Score=131.23 Aligned_cols=265 Identities=9% Similarity=-0.014 Sum_probs=186.1
Q ss_pred EEcCCCCEEEEEEc--CC---eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEC
Q 002881 22 DLHPSEPWILASLY--SG---TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA----------DDMFIRVYNY 86 (871)
Q Consensus 22 ~~s~~~~~la~~~~--dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~ 86 (871)
...|+++++++... .+ .|.+||..+++.+..+.....+ .++++|||++++++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44578888777653 22 8899999999988887765554 999999999999886 3678999999
Q ss_pred CCCcEEEEEccC-------CCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEE-eecCCcceEEEEEecCCCC
Q 002881 87 NTMDKVKVFEAH-------TDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQI-FEGHSHYVMQVTFNPKDTN 156 (871)
Q Consensus 87 ~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~ 156 (871)
.+++.+..+... ......+.|+|+|++|+++.. ++.|.++| .++. .... +.. .. ++.+.|.+..
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~~-~~---~~~~~~~~~~ 178 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-SDDQLLSS-PT---CYHIHPGAPS 178 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-EEeEEcCC-Cc---eEEEEeCCCc
Confidence 998887776432 123568999999999999874 57899999 8874 3333 322 11 2445564567
Q ss_pred EEEEEECCCcEEEEECCCCCCeEEEe-----cCCCCe-eEEEEeecCCcCEEEEEeCCCeEEEEECCCCc--eEEEecC-
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFTLD-----AHQKGV-NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS--CVQTLEG- 227 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i-~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~- 227 (871)
.+++.+.||.+.++|. +++...... ....++ ....+.+++.. ++++ +..+.+.+.|+.++. .+..+..
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~-~~~~~v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWP-VYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCE-EEEE-cCCceEEEEeccCCcceEeeeeeec
Confidence 7788889999999999 766553322 111221 23445666553 3333 367899999987543 2222211
Q ss_pred ---------cccCeEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC-eEE
Q 002881 228 ---------HTHNVSAVCFHPELPIIITGSE----------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIV 287 (871)
Q Consensus 228 ---------~~~~v~~i~~~p~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~ 287 (871)
.......+.++|+++.+.+... .+.|.++|..+++.+..+... ...++++|+|||+ .++
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~ 334 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLY 334 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEE
Confidence 1122344788999988777653 357999999999999888765 4689999999999 677
Q ss_pred EEE-cCCeEEEe
Q 002881 288 IGY-DEGTIMVK 298 (871)
Q Consensus 288 ~g~-~dg~i~i~ 298 (871)
++. .++.+.++
T Consensus 335 v~~~~~~~V~Vi 346 (373)
T 2mad_H 335 ALSAGTEVLHIY 346 (373)
T ss_pred EEcCCCCeEEEE
Confidence 766 47887775
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=4e-14 Score=165.61 Aligned_cols=244 Identities=9% Similarity=-0.085 Sum_probs=168.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc-----CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCe-------
Q 002881 13 QRSERVKSVDLHPSEPWILASLY-----SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMF------- 80 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 80 (871)
+|...+.+++|||||++||.+.. +..|++||+.+++.+............++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 45567999999999999995543 358999999998764111111112267999999999999988765
Q ss_pred ------EEEEECCCCcE--EEEE--ccCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCceEEEEeecCCcceE
Q 002881 81 ------IRVYNYNTMDK--VKVF--EAHTDYIRCVAVHPTLPYVLSSSDDM----LIKLWDWEKGWMCTQIFEGHSHYVM 146 (871)
Q Consensus 81 ------i~iw~~~~~~~--~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~ 146 (871)
|++|++.++.. ...+ ..|...+..+.|+|+|++|++++.++ .|.+|+..++ ..... ..+...+.
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-~~~~l-~~~~~~~~ 275 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-DFRLL-VKGVGAKY 275 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-SCEEE-EECSSCCE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-ceEEe-ecCCCceE
Confidence 99999998762 2333 34556789999999999998887666 6777776554 33333 33444556
Q ss_pred EEEEecCCCCEEEEEE---CCCcEEEEECCCCCC--eEEEecC--CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC-C
Q 002881 147 QVTFNPKDTNTFASAS---LDRTIKIWNLGSPDP--NFTLDAH--QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-T 218 (871)
Q Consensus 147 ~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~-~ 218 (871)
...| | ++.+++.+. .++.|.+||+.++.. ...+..+ ...+..++++ ++. ++++...++..++|.+. +
T Consensus 276 ~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~--lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 276 EVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH--LSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp EEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE--EEEEEEETTEEEEEEEETT
T ss_pred EEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE--EEEEEEECCEEEEEEEeCC
Confidence 6666 4 344544444 258899999987653 2333333 4457777776 332 78888889888877554 3
Q ss_pred CceEEEecCc-ccCeEEEEEcCCCCEEEEEE----CCCcEEEEeCCCCeE
Q 002881 219 KSCVQTLEGH-THNVSAVCFHPELPIIITGS----EDGTVRIWHATTYRL 263 (871)
Q Consensus 219 ~~~~~~~~~~-~~~v~~i~~~p~~~~l~~~~----~dg~v~iwd~~~~~~ 263 (871)
+.....+..+ ...+..++++|+++.++... ..++|++||+.+++.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 5566666554 55677888999988666433 346899999988764
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=8.6e-13 Score=134.72 Aligned_cols=239 Identities=8% Similarity=-0.045 Sum_probs=167.1
Q ss_pred CEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEE
Q 002881 59 PVRSAKFVARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (871)
...+++++++|+.++ +.+.++.|.+|+..+.........+...+.++++++++..+++.. ++.|.+||..+. .....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~-~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN-NQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS-CCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc-eEeee
Confidence 678999999998666 446788999999765543322223445688999999988555544 889999998865 33222
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC
Q 002881 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (871)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~ 217 (871)
.......+..++++| +++++++...++.|.+|+..+.............+..+++++++. ++++...++.|.+||..
T Consensus 103 ~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN--VYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC--EEEEEGGGTEEEEECTT
T ss_pred ecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC--EEEEECCCCEEEEEecC
Confidence 222335688999999 677777777788999998655443322222334567899988775 66666678899999988
Q ss_pred CCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 218 TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 218 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
++........+...+.+++++++|.++++...++.|.+|+..+.........+...+.+++++++|+.+++...++.|.+
T Consensus 180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~ 259 (270)
T 1rwi_B 180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 259 (270)
T ss_dssp TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEE
Confidence 66654433334467899999999987777777889999998765433322223357899999999998888888899888
Q ss_pred ecCCC
Q 002881 298 KIGRE 302 (871)
Q Consensus 298 ~~~~~ 302 (871)
+...+
T Consensus 260 ~~~~~ 264 (270)
T 1rwi_B 260 LTSLE 264 (270)
T ss_dssp ECCCG
T ss_pred EcCCC
Confidence 64443
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=1.5e-11 Score=127.59 Aligned_cols=268 Identities=6% Similarity=-0.064 Sum_probs=186.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEE-eeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Q 002881 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 92 (871)
....+.+++++++|...++...++.|.+||.. ++.... +......+.++++.++|...++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45689999999999866665568999999977 554431 22233678999999999877776668899999987 5543
Q ss_pred EE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 93 KV-FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 93 ~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
.. .......+.++++.+++...++...++.|..+|.. +.............+..+++.| ++++.++...++.|..+|
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEEC
Confidence 22 22244678999999999877776668899999987 4233222333455689999998 677666666678899999
Q ss_pred CCCCCCeEE-EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEE-ecCcccCeEEEEEcCCCCEEEEEEC
Q 002881 172 LGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT-LEGHTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 172 ~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
. +++.... .......+..+.+.+++. +.++....+.|.+|+. ++..... .......+.+++++++|.+.++...
T Consensus 174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 174 N-TGKLEEYPLPTNAAAPVGITSGNDGA--LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSS--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred C-CCcEEEeeCCCCCCCcceEEECCCCC--EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 8 4443321 122345678888887765 5555556778999998 4554332 3334567899999999987776666
Q ss_pred CCcEEEEeCCCCeEEE-EEecCCccEEEEEEeeCCCeEEEEE
Q 002881 250 DGTVRIWHATTYRLEN-TLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 250 dg~v~iwd~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
++.|..|+. +++... .+......+.++++.++|+..++..
T Consensus 250 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 250 ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence 789999997 454332 2332345678888888887554443
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=3.1e-12 Score=133.59 Aligned_cols=268 Identities=13% Similarity=0.122 Sum_probs=190.3
Q ss_pred EEEEcCCCCEEEEEEc-----CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe----------CCCeEEEE
Q 002881 20 SVDLHPSEPWILASLY-----SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA----------DDMFIRVY 84 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 84 (871)
.....|+++++++... ++.|.++|..+++.+..+.....+ . ++++|||+++++++ .++.|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 4556799999998865 579999999999999999876666 4 99999999998876 36789999
Q ss_pred ECCCCcEEEEEccCC-------CCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCC
Q 002881 85 NYNTMDKVKVFEAHT-------DYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDT 155 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 155 (871)
|..+++.+..+.... .....+.++|+|++++++.. ++.|.++|..++ +....+.... +....|.+.
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v~g----~~~~~P~g~ 189 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPD----CYHIFPTAP 189 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS----EEEEEEEET
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEECCC----cceeecCCC
Confidence 999999888875321 24567999999999998874 689999999998 4444443211 122234367
Q ss_pred CEEEEEECCCcEEEEECCC-CCCeEEEecC----CCCee-EEEEe-ecCCcCEEEEEeCCCeEEEEECCCCce--EEEec
Q 002881 156 NTFASASLDRTIKIWNLGS-PDPNFTLDAH----QKGVN-CVDYF-TGGDKPYLITGSDDHTAKVWDYQTKSC--VQTLE 226 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~-~i~~~-~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~ 226 (871)
..+++.+.||.+.+.++.. ++........ ..++. ...|. +++. ++..+.+|.|++.|..++.. +..+.
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~---~~~vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR---LVWPTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE---EEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc---EEEEeCCCEEEEEECCCCcceeeccee
Confidence 7888999999999999976 4543222111 12221 23454 3442 44466689999999976542 22221
Q ss_pred ---------C-cccCeEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC-e
Q 002881 227 ---------G-HTHNVSAVCFHPELPIIITGSE----------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-R 285 (871)
Q Consensus 227 ---------~-~~~~v~~i~~~p~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~ 285 (871)
+ .......+.++|+++.+++... .+.|.++|+.+++.+..+... .+++++++++|++ .
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPL 345 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCE
T ss_pred ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeE
Confidence 0 1123345777999988777642 247999999999999988876 5789999999997 6
Q ss_pred EEEEEc-CCeEEEe
Q 002881 286 IVIGYD-EGTIMVK 298 (871)
Q Consensus 286 l~~g~~-dg~i~i~ 298 (871)
|+++.. ++.+.+.
T Consensus 346 ly~tn~~~~~VsVi 359 (386)
T 3sjl_D 346 LYALSTGDKTLYIH 359 (386)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEcCCCCeEEEE
Confidence 666543 6777664
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=4.9e-12 Score=132.84 Aligned_cols=250 Identities=10% Similarity=-0.017 Sum_probs=177.9
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~ 94 (871)
.....+.+.. +...++...++.|.+||..+++.+.++. ....+..+++++++ .++++. .++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEE
Confidence 4577888753 3344444457899999999999988885 34678899999998 555555 789999999999988777
Q ss_pred EccCC-----CCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC---
Q 002881 95 FEAHT-----DYIRCVAVHPTLPYVLSSS--DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD--- 164 (871)
Q Consensus 95 ~~~~~-----~~i~~i~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--- 164 (871)
+.... .....+++ ++..|+++. .++.|.++|..++ .....+... .....+.++| ++++++++..+
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~g-~~p~~i~~~~-dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD-KVVDELTIG-IQPTSLVMDK-YNKMWTITDGGYEG 195 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT-EEEEEEECS-SCBCCCEECT-TSEEEEEBCCBCTT
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEcC-CCccceEEcC-CCCEEEEECCCccC
Confidence 66433 14556777 345666665 4889999999988 444444332 2356788898 67766666554
Q ss_pred -------CcEEEEECCCCCCeEEEecC-CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEE--ecCcccCeEE
Q 002881 165 -------RTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT--LEGHTHNVSA 234 (871)
Q Consensus 165 -------g~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~v~~ 234 (871)
+.|.++|..+++....+... ......++++|+++ .+.++.. .|.+||..+++.... +.........
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~--~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~g 271 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD--TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYG 271 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC--EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEE
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC--EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEE
Confidence 78999999888766565432 23678999999877 5666544 899999988775321 1212456889
Q ss_pred EEEcC-CCCEEEEE----ECCCcEEEEeCCCCeEEEEEecCCccEEEEEE
Q 002881 235 VCFHP-ELPIIITG----SEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (871)
Q Consensus 235 i~~~p-~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~ 279 (871)
++++| ++.++++. ..++.|.+||.. ++.+.++... .....++|
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 99999 55566665 568899999987 8888877654 34455555
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=2.3e-12 Score=135.31 Aligned_cols=252 Identities=8% Similarity=-0.040 Sum_probs=176.8
Q ss_pred CCeEEEEeCCCCceeEEeee------cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcC
Q 002881 36 SGTVCIWNYQSQTMAKSFEV------TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~ 109 (871)
++.|.+||.++++....+.. .......+.+. ++...++...++.|.+||..+++.+..+. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 78999999999887654311 12346777774 34444555567999999999999988885 346789999999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCceEEEEeecCC-----cceEEEEEecCCCCEEEEEE-CCCcEEEEECCCCCCeEEEe
Q 002881 110 TLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHS-----HYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSPDPNFTLD 182 (871)
Q Consensus 110 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 182 (871)
++ .++++. .++.|.+||..++ .....+.... .....+++ . ++..+++.. .++.|.++|+.+++....+.
T Consensus 94 ~g-~lyv~~~~~~~v~~iD~~t~-~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 94 DE-KAYVTQIWDYRIFIINPKTY-EITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp TT-EEEEEEBSCSEEEEEETTTT-EEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CC-eEEEEECCCCeEEEEECCCC-eEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 88 566555 7899999999988 4443333222 13456666 3 454444443 48999999999888777665
Q ss_pred cCCCCeeEEEEeecCCcCEEEEEeCC----------CeEEEEECCCCceEEEecCc-ccCeEEEEEcCCCCEEEEEECCC
Q 002881 183 AHQKGVNCVDYFTGGDKPYLITGSDD----------HTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 183 ~~~~~i~~i~~~~~~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~~~~~-~~~v~~i~~~p~~~~l~~~~~dg 251 (871)
.. .....+.++|+++ +++++..+ +.|.++|..+++....+... ......++++|+++.+.++..
T Consensus 170 ~g-~~p~~i~~~~dG~--l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 170 IG-IQPTSLVMDKYNK--MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp CS-SCBCCCEECTTSE--EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred cC-CCccceEEcCCCC--EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence 43 3456788888775 55555443 78999999988877666533 236889999999998888754
Q ss_pred cEEEEeCCCCeEEEE--EecCCccEEEEEEeeCCCeEEEE-----EcCCeEEEe
Q 002881 252 TVRIWHATTYRLENT--LNYGLERVWAIGYMKSSRRIVIG-----YDEGTIMVK 298 (871)
Q Consensus 252 ~v~iwd~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~g-----~~dg~i~i~ 298 (871)
.|.+||..+++.... +.........++++|++..|.++ ..++.|.++
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 899999988775321 11113578999999955555554 456777765
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=7.9e-11 Score=121.98 Aligned_cols=235 Identities=6% Similarity=-0.057 Sum_probs=166.2
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (871)
+...+.+++++++|...++...++.|.+||.. ++..... ..+...+.++++++++...++...++.|..||.... ..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EE
Confidence 44678999999999977766668899999988 5543322 234567999999999987777666889999998733 22
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE-EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEE
Q 002881 135 TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (871)
Q Consensus 135 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v 213 (871)
..........+..++++| +++++++...++.|..||. +++.... .......+..+.+.+++. ++++...++.|..
T Consensus 91 ~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA--LWFTENQNNAIGR 166 (299)
T ss_dssp EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEE
T ss_pred EEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC--EEEEeCCCCEEEE
Confidence 222222455689999998 6777777767889999998 4443322 122345678888888775 5665666789999
Q ss_pred EECCCCceEEE-ecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE-EecCCccEEEEEEeeCCCeEEEEEc
Q 002881 214 WDYQTKSCVQT-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT-LNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 214 ~d~~~~~~~~~-~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
||. +++.... .......+.++++++++.+.++...++.|.+|+. +++.... .......+.+++++++|+..++...
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence 998 6665432 3334556889999999987777666789999998 6664432 2334467899999999886555545
Q ss_pred CCeEEEe
Q 002881 292 EGTIMVK 298 (871)
Q Consensus 292 dg~i~i~ 298 (871)
++.+..+
T Consensus 245 ~~~i~~~ 251 (299)
T 2z2n_A 245 ANKIGRL 251 (299)
T ss_dssp TTEEEEE
T ss_pred CceEEEE
Confidence 5666553
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=9.5e-13 Score=155.03 Aligned_cols=242 Identities=10% Similarity=0.029 Sum_probs=163.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCe--------
Q 002881 14 RSERVKSVDLHPSEPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMF-------- 80 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 80 (871)
|...+.+++|||||++||.+..+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33468899999999999987653 3599999999987653 222222357899999 99998876553
Q ss_pred ------EEEEECCCCcE--EEEEc--cCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCceE-EEEeecCCcc
Q 002881 81 ------IRVYNYNTMDK--VKVFE--AHTDYIRCVAVHPTLPYVLSSSDDM-----LIKLWDWEKGWMC-TQIFEGHSHY 144 (871)
Q Consensus 81 ------i~iw~~~~~~~--~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~-~~~~~~~~~~ 144 (871)
|.+|++.++.. ...+. .+...+..+.|+|+|++|+..+.++ .|.+||+.++... ...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 89999987652 23333 3334688999999999998877554 8999999876222 2333444444
Q ss_pred eEEEEEecCCCCEEEEEEC----CCcEEEEECCCCC-C-eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC-
Q 002881 145 VMQVTFNPKDTNTFASASL----DRTIKIWNLGSPD-P-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ- 217 (871)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~-~-~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~- 217 (871)
+.... +| +++.|+..+. ++.|.+||+.++. . ...+..+...+..+.++ ++. ++++...++..++|.+.
T Consensus 319 ~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~-lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 319 QWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNR-LFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp CEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTE-EEEEEEETTEEEEEEEET
T ss_pred eEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCE-EEEEEEECCEEEEEEEeC
Confidence 44443 46 6677776665 3459999997752 2 23333344445566665 222 77888888877776543
Q ss_pred CCceEEEecCc-ccCeEEEEEcCCCCEEEEE-E---CCCcEEEEeCCCCe
Q 002881 218 TKSCVQTLEGH-THNVSAVCFHPELPIIITG-S---EDGTVRIWHATTYR 262 (871)
Q Consensus 218 ~~~~~~~~~~~-~~~v~~i~~~p~~~~l~~~-~---~dg~v~iwd~~~~~ 262 (871)
++.....+..+ ...+..+.++|+++.++.. + ..++|+.||+.+++
T Consensus 394 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 394 DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 45566666543 5668889999998755533 2 34689999998876
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=3.1e-12 Score=150.61 Aligned_cols=261 Identities=9% Similarity=-0.028 Sum_probs=172.5
Q ss_pred cCCCCEEEEEEcCCe---EEEEe--CC---CCceeEEee------ecCCCEEEEEEeCCCCEEEEEeCC-----CeEEEE
Q 002881 24 HPSEPWILASLYSGT---VCIWN--YQ---SQTMAKSFE------VTELPVRSAKFVARKQWVVAGADD-----MFIRVY 84 (871)
Q Consensus 24 s~~~~~la~~~~dg~---v~iwd--~~---~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 84 (871)
+|+|++++....++. -.+|. .. .+.....+. .+...+..++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489999887665432 44554 33 333333222 122368899999999999987654 469999
Q ss_pred ECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCe--------------EEEEECCCCceE-EEEeec--CCcceEE
Q 002881 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML--------------IKLWDWEKGWMC-TQIFEG--HSHYVMQ 147 (871)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~~~-~~~~~~--~~~~v~~ 147 (871)
|+.+++.+.... +...+..++|+|| +.|+.++.++. |++|++.++... ..++.. +...+..
T Consensus 195 dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 999998765421 1222357899999 99998877654 899999876421 223332 3345889
Q ss_pred EEEecCCCCEEEEEECCC-----cEEEEECCCC--CCeEEEecCCCCeeEEEEeecCCcCEEEEEeC----CCeEEEEEC
Q 002881 148 VTFNPKDTNTFASASLDR-----TIKIWNLGSP--DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD----DHTAKVWDY 216 (871)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~----dg~i~v~d~ 216 (871)
+.|+| ++++++..+.++ .|.+||+.++ +....+..+...+... ++|+++ .|+..+. ++.|.+||+
T Consensus 273 ~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~--~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 273 ASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGD--QLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp EEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETT--EEEEEECTTCTTCEEEEEEC
T ss_pred EEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCC--EEEEEECCCCCCCEEEEEeC
Confidence 99999 787777766543 8999999876 4145555555555444 347777 4555554 456999999
Q ss_pred CCC--ceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEEecC-CccEEEEEEeeCCCeEEEEEc
Q 002881 217 QTK--SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT-TYRLENTLNYG-LERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 217 ~~~--~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~g~~ 291 (871)
.++ .....+..+...+..++|+ ++.++++...|+..++|... +++....+..+ .+.+..++++|+++.++....
T Consensus 349 ~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 349 SGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp SSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred CCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 874 3334444455556778887 55678888889887777543 45566666543 567888999999887775543
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=6.9e-12 Score=130.94 Aligned_cols=257 Identities=10% Similarity=0.047 Sum_probs=176.9
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEeCCCCceeEEeeecC-------CCEEEEEEeCCCCEEEEEeC--CCe
Q 002881 20 SVDLHPSEPWILASL----------YSGTVCIWNYQSQTMAKSFEVTE-------LPVRSAKFVARKQWVVAGAD--DMF 80 (871)
Q Consensus 20 ~i~~s~~~~~la~~~----------~dg~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--dg~ 80 (871)
.++++|||++++++. .++.|.+||..+++.+..+.... .....+.|+|||++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 499999999888875 35789999999999998886532 24667999999999998874 689
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC----CcceE-EEEEecCCC
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH----SHYVM-QVTFNPKDT 155 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~-~~~~~p~~~ 155 (871)
|.++|+.+++.+.++.... . ...+....+.+++.+.||.+.+.++.+..........+ ..++. ...|.+.++
T Consensus 162 VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 9999999999998886422 1 22333344567788889999999987621322211111 12221 245654255
Q ss_pred CEEEEEECCCcEEEEECCCCCC--eEEEe----------cCCCCeeEEEEeecCCcCEEEEEe--------CCCeEEEEE
Q 002881 156 NTFASASLDRTIKIWNLGSPDP--NFTLD----------AHQKGVNCVDYFTGGDKPYLITGS--------DDHTAKVWD 215 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~--~~~~~----------~~~~~i~~i~~~~~~~~~~l~~~~--------~dg~i~v~d 215 (871)
+++ ..+.+|.|.+.|+.+... ...+. ........+.++++++..|++... ..+.|.++|
T Consensus 239 ~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 239 RLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp EEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred cEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 444 466689999999976643 22221 012233456777777752232221 125799999
Q ss_pred CCCCceEEEecCcccCeEEEEEcCCCC-EEEEE-ECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeC
Q 002881 216 YQTKSCVQTLEGHTHNVSAVCFHPELP-IIITG-SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (871)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~ 282 (871)
+.+++.+..+.. ...+.++.++|+++ +|+++ ..++.|.++|..+++.+.++... +....+.+++|
T Consensus 318 ~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 318 AKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 999999988874 34678999999996 66664 45899999999999999988766 44455666665
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=1.8e-11 Score=130.44 Aligned_cols=264 Identities=11% Similarity=0.078 Sum_probs=187.6
Q ss_pred CCCCEEEEEEcC-----CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEECCCC
Q 002881 25 PSEPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA----------DDMFIRVYNYNTM 89 (871)
Q Consensus 25 ~~~~~la~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~ 89 (871)
|++++++++... +.|.++|..+++.+..+.....+ .+.++|||++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 577777776653 69999999999999999877766 899999999998886 3678999999999
Q ss_pred cEEEEEccC-------CCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002881 90 DKVKVFEAH-------TDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (871)
Q Consensus 90 ~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (871)
+.+..+.-. ......+.++|+|++++++.. ++.|.+.|..+.. ....+.... . ....|.+...+++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v~g--~--~~~~p~g~~~~v~ 234 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDVPD--C--YHIFPASPTVFYM 234 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS--E--EEEEEEETTEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEcCC--c--eeeccCCCcEEEE
Confidence 988877522 234567899999999999874 5789999999984 444433211 1 2334434577788
Q ss_pred EECCCcEEEEECCCCCCeEEE----ecCCCCe-eEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE--EecC------
Q 002881 161 ASLDRTIKIWNLGSPDPNFTL----DAHQKGV-NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--TLEG------ 227 (871)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~----~~~~~~i-~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~------ 227 (871)
.+.||.+.+.++.+++..... .....++ ..+.+.+++.. ++.....+.|.+.|........ .+..
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~--~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR--LVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE--EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE--EEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 888999998888555544221 1111221 23456777764 5555668899999987544211 1110
Q ss_pred ----cccCeEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCC-eEEEEE-c
Q 002881 228 ----HTHNVSAVCFHPELPIIITGSE----------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGY-D 291 (871)
Q Consensus 228 ----~~~~v~~i~~~p~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~g~-~ 291 (871)
.......+.++|+++.+++... .+.|.++|..+++.+..+... ...+.+.|+||++ .+++.. .
T Consensus 313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~ 391 (426)
T 3c75_H 313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAG 391 (426)
T ss_dssp GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETT
T ss_pred ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCC
Confidence 0111223689999887776542 357999999999999988765 4689999999999 888877 5
Q ss_pred CCeEEEe
Q 002881 292 EGTIMVK 298 (871)
Q Consensus 292 dg~i~i~ 298 (871)
++.+.+.
T Consensus 392 s~~VsVI 398 (426)
T 3c75_H 392 TQTLHIY 398 (426)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 7888774
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=1.6e-10 Score=122.90 Aligned_cols=238 Identities=10% Similarity=-0.000 Sum_probs=165.9
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEeCCCCceeEEeeec-------CCCEEEEEEeCCCCEEEEEeC--CCe
Q 002881 20 SVDLHPSEPWILASL----------YSGTVCIWNYQSQTMAKSFEVT-------ELPVRSAKFVARKQWVVAGAD--DMF 80 (871)
Q Consensus 20 ~i~~s~~~~~la~~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~ 80 (871)
.+++||||++++++. .++.|.+||..+++.+..+... ......+.|+|||++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 2678999999998888777543 123568999999999999874 578
Q ss_pred EEEEECCCCcEEEE-EccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEEEe----ecCCcc-eEEEEEecC
Q 002881 81 IRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIF----EGHSHY-VMQVTFNPK 153 (871)
Q Consensus 81 i~iw~~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~-v~~~~~~p~ 153 (871)
|.++| .+++.+.. +.... |+.+.|++ ..+++.+.||.+.++|. ++....... .....+ .....+.+.
T Consensus 150 v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99988877 65322 24455554 34566778999999999 663332211 011112 233456663
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCe--EEEec----------CCCCeeEEEEeecCCcCEEEEEeC----------CCeE
Q 002881 154 DTNTFASASLDRTIKIWNLGSPDPN--FTLDA----------HQKGVNCVDYFTGGDKPYLITGSD----------DHTA 211 (871)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~i~~i~~~~~~~~~~l~~~~~----------dg~i 211 (871)
++ .++..+..+.+.+.|+.+.... ..+.. .......+.++|+++. +.++.. ++.|
T Consensus 224 ~~-~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~--lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 224 SG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG--IYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred CC-EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE--EEEEeccCCcccccCCCCeE
Confidence 34 4444446789999998765321 12211 1122344678887764 444332 3589
Q ss_pred EEEECCCCceEEEecCcccCeEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCeEEEEE
Q 002881 212 KVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 212 ~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~ 267 (871)
.++|..+++.+.++.. .....++.|+|+|+ +++++. .++.|.++|..+++.+..+
T Consensus 301 ~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999999999888863 34578999999999 777776 5899999999999988773
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=3.1e-11 Score=130.33 Aligned_cols=235 Identities=11% Similarity=0.030 Sum_probs=168.2
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCC--eEEEEECCCCcEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--FIRVYNYNTMDKVK 93 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~ 93 (871)
.....++|+|++.++++...++.|++||..++.......... ... ++|+|+++.|++++.++ .|.+|+..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 468899999999866666667899999998877665554433 334 99999999999988766 89999987665444
Q ss_pred EE----ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEE----eecCCcce-E-EEEEecCCCCEEEEEEC
Q 002881 94 VF----EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI----FEGHSHYV-M-QVTFNPKDTNTFASASL 163 (871)
Q Consensus 94 ~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v-~-~~~~~p~~~~~l~~~~~ 163 (871)
.+ ......+.+++++|++..|+++..++.|..||..++. .... ..++...- . .++|+|.++.++++-..
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 44 2245668899999965667777778999999998763 2222 12222222 3 89999955666666677
Q ss_pred CCcEEEEECCCCCCeEEEecCC---------------CCeeEEEEeecCCcCEEEEEe-CCCeEEEEECCCCceEEEecC
Q 002881 164 DRTIKIWNLGSPDPNFTLDAHQ---------------KGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEG 227 (871)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~---------------~~i~~i~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~ 227 (871)
++.|..|+.... ...+.++. .....+++++++. ++++-. .++.|+.|++.++.. .++.+
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~--lyvad~~~~~~I~~~~~~~G~v-~~~~g 362 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN--FYIVDGFKGYCLRKLDILDGYV-STVAG 362 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC--EEEEETTTTCEEEEEETTTTEE-EEEEE
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC--EEEEeCCCCCEEEEEECCCCEE-EEEeC
Confidence 889999997653 33332221 3467899998876 677777 789999999877754 33333
Q ss_pred c---------------ccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 228 H---------------THNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 228 ~---------------~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
+ -.....++++|++.++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 3 245889999999887777777888887764
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=2.7e-11 Score=126.66 Aligned_cols=239 Identities=7% Similarity=0.025 Sum_probs=164.7
Q ss_pred CCCCEEEEEEcCCCCEEEE-------EEcCCeEEEEeCCCCceeEEee----ecCCCEEEEEEeCC-CCEEEEEeCCCeE
Q 002881 14 RSERVKSVDLHPSEPWILA-------SLYSGTVCIWNYQSQTMAKSFE----VTELPVRSAKFVAR-KQWVVAGADDMFI 81 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~-------~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i 81 (871)
.-....+++|++++..+++ +..++.|.+||..+++...... .+...+.+++++++ |+ |.+++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCE
Confidence 3345689999999987666 4668899999988877543221 14457899999999 65 4444445579
Q ss_pred EEEECCCCcEEEE-Ecc----CCCCeEEEEEcCCCCEEEEEECC---------------CeEEEEECCCCceEEEEeecC
Q 002881 82 RVYNYNTMDKVKV-FEA----HTDYIRCVAVHPTLPYVLSSSDD---------------MLIKLWDWEKGWMCTQIFEGH 141 (871)
Q Consensus 82 ~iw~~~~~~~~~~-~~~----~~~~i~~i~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~ 141 (871)
.+||.+ ++.... ... +...+.+++++++|...++...+ +.|..||.. + ...... .+
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~-~~ 170 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQVD-TA 170 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEEEE-EE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C-CEEEec-cC
Confidence 999988 665433 221 12458899999999877766554 567777765 3 333322 23
Q ss_pred CcceEEEEEe----cCCCCEEE-EEECCCcEEEEECC-CCCC-----eEEEecCC-CCeeEEEEeecCCcCEEEEEeCCC
Q 002881 142 SHYVMQVTFN----PKDTNTFA-SASLDRTIKIWNLG-SPDP-----NFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 142 ~~~v~~~~~~----p~~~~~l~-~~~~dg~i~i~d~~-~~~~-----~~~~~~~~-~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
......++|+ | +++.++ +...++.|.+||.. .++. ...+..+. ..+..+++.+++. ++++...++
T Consensus 171 ~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--l~v~~~~~~ 247 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN--LLVANWGSS 247 (314)
T ss_dssp ESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC--EEEEEETTT
T ss_pred CCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC--EEEEEcCCC
Confidence 3446789999 8 565554 44567899999976 3321 11122222 4577888888775 666666788
Q ss_pred eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEE-EECCCcEEEEeCCC
Q 002881 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT-GSEDGTVRIWHATT 260 (871)
Q Consensus 210 ~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~-~~~dg~v~iwd~~~ 260 (871)
.|.+||..+++.+..+..+...+.+++++|+++.|.+ ...++.|..|++..
T Consensus 248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999999877777667666678999999999995554 44567899998764
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=8.2e-10 Score=114.30 Aligned_cols=234 Identities=8% Similarity=-0.065 Sum_probs=164.0
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-EccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceE
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (871)
....+.++++.++|...++...++.|.+|+.. ++.... +..+...+.++++.+++...++...++.|..+|.. +...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 34578999999999977777678999999987 554432 23334678999999999877766667899999988 4232
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE-EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEE
Q 002881 135 TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (871)
Q Consensus 135 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v 213 (871)
..........+.++++.+ +++++++...++.|..+|.. ++.... +......+..+.+.++++ +.++...++.|..
T Consensus 96 ~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA--LWFTENQNNSIGR 171 (300)
T ss_dssp EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS--EEEEETTTTEEEE
T ss_pred EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC--EEEEecCCCeEEE
Confidence 222232346689999998 67777776668899999987 443321 222345678888888776 5566556789999
Q ss_pred EECCCCceEE-EecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE-EecCCccEEEEEEeeCCCeEEEEEc
Q 002881 214 WDYQTKSCVQ-TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT-LNYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 214 ~d~~~~~~~~-~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
++. +++... ....+...+.++++++++.+.++....+.|.+|+. +++.... +......+.++++.++|+..++...
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 998 555433 22234456889999999987777666778999997 5554332 3334567889999999885555545
Q ss_pred CCeEEE
Q 002881 292 EGTIMV 297 (871)
Q Consensus 292 dg~i~i 297 (871)
++.+..
T Consensus 250 ~~~i~~ 255 (300)
T 2qc5_A 250 ANQIGR 255 (300)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 566654
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=7.6e-11 Score=123.19 Aligned_cols=235 Identities=8% Similarity=0.077 Sum_probs=162.5
Q ss_pred cCCCEEEEEEeCCCCEEEE-------EeCCCeEEEEECCCCcEEEEEc----cCCCCeEEEEEcCC-CCEEEEEECCCeE
Q 002881 56 TELPVRSAKFVARKQWVVA-------GADDMFIRVYNYNTMDKVKVFE----AHTDYIRCVAVHPT-LPYVLSSSDDMLI 123 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~i~~i~~~~~-~~~l~~~~~dg~i 123 (871)
.-....+++|++++..+++ ++.++.|.+|+..+++...... ++...+.+++++++ +. |.+++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCE
Confidence 3345689999999987777 5678899999988877643322 24467899999999 64 5555555589
Q ss_pred EEEECCCCceEEEE-eec----CCcceEEEEEecCCCCEEEEEECC---------------CcEEEEECCCCCCeEEEec
Q 002881 124 KLWDWEKGWMCTQI-FEG----HSHYVMQVTFNPKDTNTFASASLD---------------RTIKIWNLGSPDPNFTLDA 183 (871)
Q Consensus 124 ~iwd~~~~~~~~~~-~~~----~~~~v~~~~~~p~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~ 183 (871)
.+||.+ + ..... ... ....+.+++++| +++++++...+ +.|..|+.. ++.. .+..
T Consensus 95 ~~~d~~-g-~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~ 169 (314)
T 1pjx_A 95 LVVQTD-G-TFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDT 169 (314)
T ss_dssp EEEETT-S-CEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEE
T ss_pred EEEeCC-C-CEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-Eecc
Confidence 999988 5 33333 221 123578999999 67777766554 567777765 4332 2222
Q ss_pred CCCCeeEEEEe----ecCCcCEEEEEeCCCeEEEEECC-CCc-----eEEEecCcc-cCeEEEEEcCCCCEEEEEECCCc
Q 002881 184 HQKGVNCVDYF----TGGDKPYLITGSDDHTAKVWDYQ-TKS-----CVQTLEGHT-HNVSAVCFHPELPIIITGSEDGT 252 (871)
Q Consensus 184 ~~~~i~~i~~~----~~~~~~~l~~~~~dg~i~v~d~~-~~~-----~~~~~~~~~-~~v~~i~~~p~~~~l~~~~~dg~ 252 (871)
.......++++ ++++. ++++...++.|.+|+.. +++ ....+..+. ..+..++++++|.++++...++.
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~-l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQ-LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EESSEEEEEEEECTTSCEEE-EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCCCcceEEEecccCCCCCE-EEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 33456788998 77652 34444567899999976 443 223333333 55788999999998888878899
Q ss_pred EEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEc-CCeEEE
Q 002881 253 VRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMV 297 (871)
Q Consensus 253 v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~-dg~i~i 297 (871)
|.+||..+++....+..+...+.+++++|+++.|.+++. ++.+..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence 999998877766666666678999999999996666654 344443
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=4.5e-10 Score=116.04 Aligned_cols=229 Identities=12% Similarity=0.094 Sum_probs=159.2
Q ss_pred CCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEE
Q 002881 57 ELPVRSAKFVARKQWV-VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (871)
..-..+..|+|++..| ++...++.|..||..+++. ..+. ....+.+++++++|++ +++. ++.|.+||.+++ ...
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l-~v~~-~~~l~~~d~~~g-~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGY-VATI-GTKFCALNWKEQ-SAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSE-EEEE-TTEEEEEETTTT-EEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCE-EEEE-CCeEEEEECCCC-cEE
Confidence 3345688999965554 5555688999999988765 3333 4567999999999984 4444 568999999877 333
Q ss_pred EEeec----CCcceEEEEEecCCCCEEEEEECC---------CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEE
Q 002881 136 QIFEG----HSHYVMQVTFNPKDTNTFASASLD---------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (871)
Q Consensus 136 ~~~~~----~~~~v~~~~~~p~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 202 (871)
..... ....+..++++| +++++++.... ..-.+|.+........+.......+.++|+|+++. ++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~-ly 164 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI-FY 164 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE-EE
T ss_pred EEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE-EE
Confidence 33221 124578899999 67766554321 22345544332233333333445688999998873 44
Q ss_pred EEEeCCCeEEEEEC--CCCce-----EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEE
Q 002881 203 ITGSDDHTAKVWDY--QTKSC-----VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVW 275 (871)
Q Consensus 203 ~~~~~dg~i~v~d~--~~~~~-----~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 275 (871)
++.+.++.|.+|++ .++.. ...+..+...+..++++++|.+.++....+.|..||..+++.+..+..+...++
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 55666789999987 44543 222333345678999999998888887788899999988999988888877899
Q ss_pred EEEEe-eCCCeEEEEEcC
Q 002881 276 AIGYM-KSSRRIVIGYDE 292 (871)
Q Consensus 276 ~i~~~-~~~~~l~~g~~d 292 (871)
+++|. |+++.|.+++..
T Consensus 245 ~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEESGGGCEEEEEEBC
T ss_pred EEEEeCCCCCEEEEEcCC
Confidence 99998 898888777654
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=2.8e-11 Score=141.03 Aligned_cols=245 Identities=13% Similarity=0.128 Sum_probs=164.9
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEc-C----CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCC-------
Q 002881 12 AQRSERVKSVDLHPSEPWILASLY-S----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM------- 79 (871)
Q Consensus 12 ~~h~~~v~~i~~s~~~~~la~~~~-d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------- 79 (871)
.+|...+..++|||||++||.+.. . ..|++||+.+++.+.. ..+......++|+ ||+.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 346667999999999999986543 2 4699999999986543 1111113567899 999999988774
Q ss_pred ------eEEEEECCCCcE--EEEEc--c-CCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCceEEEEeecCCcc
Q 002881 80 ------FIRVYNYNTMDK--VKVFE--A-HTDYIRCVAVHPTLPYVLSSSD----DMLIKLWDWEKGWMCTQIFEGHSHY 144 (871)
Q Consensus 80 ------~i~iw~~~~~~~--~~~~~--~-~~~~i~~i~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~ 144 (871)
.|++|++.++.. ...+. . |......+.|+|+|++|+.... ++.|.++|+.++......+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 499999987643 33333 3 4556788999999998875543 2589999997763333444455555
Q ss_pred eEEEEEecCCCCEEEEEECC---CcEEEEECCCCCC--eEEEecCCCCeeEEEEeecCCcCEEEEEeCCC--eEEEEECC
Q 002881 145 VMQVTFNPKDTNTFASASLD---RTIKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQ 217 (871)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg--~i~v~d~~ 217 (871)
.... |++.++.+++++..+ +.|..+|+.++.. ...+..+...+. .|+++++. ++++...++ .|++|++.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~-lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY-LFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE-EEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE-EEEEEEECCeeEEEEEECC
Confidence 5554 556345555555443 6799999987654 245555665554 88898873 334444454 68899987
Q ss_pred CCceEEEecC-cccCeEEEEEcCCCCEEEEEECC----CcEEEEeCCCCeE
Q 002881 218 TKSCVQTLEG-HTHNVSAVCFHPELPIIITGSED----GTVRIWHATTYRL 263 (871)
Q Consensus 218 ~~~~~~~~~~-~~~~v~~i~~~p~~~~l~~~~~d----g~v~iwd~~~~~~ 263 (871)
.+ ....+.. ....+..+.++|+++.++....+ +++..||+.+++.
T Consensus 359 g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 44 4444432 34457778888888766655444 7899999887753
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=3.5e-10 Score=116.86 Aligned_cols=229 Identities=11% Similarity=0.135 Sum_probs=155.5
Q ss_pred cCCCCEEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Q 002881 13 QRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 91 (871)
.+..-.-+..|+|++..|+ +...++.|..||..++.. ..+. ....+.+++++++|++++ +. ++.|.+||.++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcE
Confidence 3444566899999765555 445588999999888765 3333 456799999999999544 44 56799999988765
Q ss_pred EEEEcc----CCCCeEEEEEcCCCCEEEEEECC---------CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002881 92 VKVFEA----HTDYIRCVAVHPTLPYVLSSSDD---------MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 92 ~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (871)
...... ....+..++++|+|++.++.... ..-.+|.+......... ..+......++|+| +++.+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-~~~~~~pngi~~sp-dg~~l 163 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-FDQVDISNGLDWSL-DHKIF 163 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-EEEESBEEEEEECT-TSCEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-eeccccccceEEcC-CCCEE
Confidence 443322 12357889999999866654321 22345544432123222 22334467899999 66655
Q ss_pred -EEEECCCcEEEEECC--CCCCe--EEE---ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc
Q 002881 159 -ASASLDRTIKIWNLG--SPDPN--FTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (871)
Q Consensus 159 -~~~~~dg~i~i~d~~--~~~~~--~~~---~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 230 (871)
++.+.++.|.+|++. ++... ..+ ......+..+++.+++. +.++....+.|..||..+++.+..+..+..
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~--lwva~~~~~~v~~~d~~tG~~~~~i~~p~~ 241 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK--LWVACYNGGRVIRLDPVTGKRLQTVKLPVD 241 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC--EEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC--EEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence 555667899999973 44321 111 22234567888888775 667777788999999998999888887777
Q ss_pred CeEEEEEc-CCCCEEEEEEC
Q 002881 231 NVSAVCFH-PELPIIITGSE 249 (871)
Q Consensus 231 ~v~~i~~~-p~~~~l~~~~~ 249 (871)
.+++++|. |+++.|.+++.
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEeCCCCCEEEEEcC
Confidence 89999998 88887666554
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.36 E-value=5.2e-10 Score=120.76 Aligned_cols=233 Identities=10% Similarity=0.054 Sum_probs=162.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCceEEE
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM--LIKLWDWEKGWMCTQ 136 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~ 136 (871)
.+..++|+++++.+++...++.|++||..++......... .... ++|+|+++.|+++..++ .|.+++..++.....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 5789999999997777777899999999887766555443 2334 99999999999988866 799999876643222
Q ss_pred E--e-ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE----EecCCCC--eeEEEEeecCCcCEEEEEeC
Q 002881 137 I--F-EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT----LDAHQKG--VNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 137 ~--~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~--i~~i~~~~~~~~~~l~~~~~ 207 (871)
. . ......+.+++++| ++..|+++..++.|..||..++..... ..+.... ...++|+|++.. ++++-..
T Consensus 210 ~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~-lyv~d~~ 287 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN-FYMSDQN 287 (409)
T ss_dssp EEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE-EEEEETT
T ss_pred eeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE-EEEEeCC
Confidence 1 1 21445678899999 445566677789999999987653222 1111111 138999985432 5666667
Q ss_pred CCeEEEEECCCCceEEEecCc---------------ccCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEecC-
Q 002881 208 DHTAKVWDYQTKSCVQTLEGH---------------THNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLNYG- 270 (871)
Q Consensus 208 dg~i~v~d~~~~~~~~~~~~~---------------~~~v~~i~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~- 270 (871)
++.|+.|+.... +..+.++ -.....++++|+|.++++-+ .++.|+.|+..++.........
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~ 365 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD 365 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC
Confidence 889999997643 2233222 23478999999999888877 7899999998777654333210
Q ss_pred -------------CccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 271 -------------LERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 271 -------------~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
....+.+++++++.++++-..++.|+.
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 245888999999777776666666653
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.34 E-value=1.2e-10 Score=123.96 Aligned_cols=240 Identities=10% Similarity=0.084 Sum_probs=168.6
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEeCCCCceeEEeeec-------CCCEEEEEEeCCCCEEEEEeC--CCe
Q 002881 20 SVDLHPSEPWILASL----------YSGTVCIWNYQSQTMAKSFEVT-------ELPVRSAKFVARKQWVVAGAD--DMF 80 (871)
Q Consensus 20 ~i~~s~~~~~la~~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~ 80 (871)
.++++|||++|+++. .++.|.++|..+++.+..+... ......+.|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999988876 3678999999999998887643 234567899999999999874 579
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCceEEE---EeecCCcce-EEEEEecCCC
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQ---IFEGHSHYV-MQVTFNPKDT 155 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v-~~~~~~p~~~ 155 (871)
|.+.|..+++.+..+..... ....|++ ..+++.+.||.+.+.+..++..... .+.....++ ..+.+.+ ++
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg 276 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL-RS 276 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT-TT
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC-CC
Confidence 99999999999888764221 2333433 4566677788888778755422211 111111111 2346788 55
Q ss_pred CEEEEEECCCcEEEEECCCCCCe--EEEec----------CCCCeeEEEEeecCCcCEEEEEe----------CCCeEEE
Q 002881 156 NTFASASLDRTIKIWNLGSPDPN--FTLDA----------HQKGVNCVDYFTGGDKPYLITGS----------DDHTAKV 213 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~i~~i~~~~~~~~~~l~~~~----------~dg~i~v 213 (871)
..++..+..+.+.+.|+.+.... ..+.. .......+.++++++. +++.. .++.|.+
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r--lyVa~~~~~~gthk~~s~~VsV 354 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDR--IYLLVDQRDEWKHKAASRFVVV 354 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTE--EEEEEEECCTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCE--EEEEecccccccccCCCCEEEE
Confidence 66666677899999998654321 11110 0112223688888774 33332 1357999
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCeEEEEE
Q 002881 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTL 267 (871)
Q Consensus 214 ~d~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~ 267 (871)
+|..+.+.+.++... ....++.|+|+++ ++++.. .++.|.++|+.+++.+.++
T Consensus 355 ID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 355 LNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999999888643 3578999999998 888887 5899999999999999887
No 215
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.33 E-value=3.5e-07 Score=108.45 Aligned_cols=421 Identities=11% Similarity=0.108 Sum_probs=252.2
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEe-eecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Q 002881 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 96 (871)
|.++...+++. |.+++.++-|..|+..+++..... ..+...|.++...+++. |.+|+.++-|..||..+++......
T Consensus 175 i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence 88888888886 555666555889998776544321 12345788888888776 4555554448889988765543322
Q ss_pred c-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeec-------CCcceEEEEEecCCCCEEEEEE
Q 002881 97 A-------HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 97 ~-------~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
. ....|.++...++|. |.+|+.+ -|.+||..++ ........ ....|.++...+ + ..+.+|+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~D~-~-g~lWigt 327 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTD-SFASYSSNPVENGSLSQRSVRSIFMDS-Q-GGMWLGT 327 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTT-EEEEECCCTTSTTSCSSSCEEEEEECT-T-SCEEEEE
T ss_pred CCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCC-eEEEEecCCCCCCCCCCCcEEEEEEeC-C-cCEEEEE
Confidence 1 135699999998876 5556666 5889998876 33333211 235689998886 3 4577788
Q ss_pred CCCcEEEEECCCCCCeEEEec-------CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC--------
Q 002881 163 LDRTIKIWNLGSPDPNFTLDA-------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------- 227 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------- 227 (871)
.++-|..|+..+.... .+.. ....|.++...+++. |.+|+.++-|..|+..++........
T Consensus 328 ~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~---lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN---LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGI 403 (795)
T ss_dssp SSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC---EEEEESSSCEEEECTTTCCEEEECCC------CC
T ss_pred CCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC---EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCC
Confidence 8888999987654322 2211 234577777766554 78888888899999887654332211
Q ss_pred cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe----cCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCc
Q 002881 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN----YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE 303 (871)
Q Consensus 228 ~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~ 303 (871)
....|.++...+++..|.+|+.++-|..||..+++...... .....|.++...++|.. -+|+.+|..++.
T Consensus 404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~~Gl~~~~----- 477 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTLSALVRFN----- 477 (795)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEESSCEEEEE-----
T ss_pred CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEecCceeEEe-----
Confidence 23568999999998857778877789999988776543322 22357888888777764 445556654442
Q ss_pred ceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEeec
Q 002881 304 PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA 383 (871)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~ 383 (871)
+....+. .+.. ..+.. ......+..+...++|++.+.+. +.+..|+...
T Consensus 478 ------~~~~~~~---------~~~~------~~~~~---------~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~ 526 (795)
T 4a2l_A 478 ------PEQRSFT---------TIEK------EKDGT---------PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEG 526 (795)
T ss_dssp ------TTTTEEE---------ECCB------CTTCC---------BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEET
T ss_pred ------CCCCeEE---------Eccc------ccccc---------ccCCceEEEEEECCCCCEEEEeC-CceEEEeCCC
Confidence 1111100 0000 00000 00112445777888888777665 6677776543
Q ss_pred ccc----------cCcCceeEEEEecCCcEEEEecCCeEEEeecccccceeeec--Cccce---eee---cCcEEEEEeC
Q 002881 384 WRN----------RSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP--TFSAE---RIY---GGTLLAMCSN 445 (871)
Q Consensus 384 ~~~----------~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~s~~---~i~---~~~~La~~~~ 445 (871)
... .....+.++...++|...+.... .+..|+........+.. .+..+ .+. .|. |-+++.
T Consensus 527 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~-lWi~t~ 604 (795)
T 4a2l_A 527 LDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGR-LWLSTN 604 (795)
T ss_dssp TEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSC-EEEEET
T ss_pred CeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCC-EEEEcC
Confidence 211 11235677777788876655544 57777654332222111 11111 111 233 444455
Q ss_pred CeEEEEeccCCcEEEEEEc-------c--eeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 446 DFICFYDWAECRLIRRIDV-------T--VKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 446 ~~v~~~d~~~~~~~~~~~~-------~--i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
+.|..||.++++. ..+.. . ..++...++|+ |.+++.+++..+.
T Consensus 605 ~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~-l~~g~~~Gl~~~~ 656 (795)
T 4a2l_A 605 RGISCFNPETEKF-RNFTESDGLQSNQFNTASYCRTSVGQ-MYFGGINGITTFR 656 (795)
T ss_dssp TEEEEEETTTTEE-EEECGGGTCSCSCEEEEEEEECTTSC-EEEEETTEEEEEC
T ss_pred CceEEEcCCCCcE-EEcCCcCCCccccCccCceeECCCCe-EEEecCCceEEEc
Confidence 6788888776653 33331 1 24667778887 5667778877754
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.32 E-value=2.6e-11 Score=127.29 Aligned_cols=172 Identities=12% Similarity=0.023 Sum_probs=135.3
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----------KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
+++.+++++.+.++++|+.++ +.+|++++.+ ..... .+.+ |+.++| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999986 5569875433 11222 3566 999999 88999999 889999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeC
Q 002881 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~ 207 (871)
+++.. .......|...+.++.+.+ + .+++++.||.|.+||+.++.... +...|.|++|+|.| ++.|..
T Consensus 113 v~sl~-~~~~~~~~~~~v~~i~~~~--p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG----~~vg~~ 180 (388)
T 1xip_A 113 LEELS-EFRTVTSFEKPVFQLKNVN--N-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ----LAVLLK 180 (388)
T ss_dssp SSSTT-CEEEEEECSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE----EEEEET
T ss_pred chhhh-ccCccceeecceeeEEecC--C-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc----eEEEEc
Confidence 98764 3444556777888888776 2 38889999999999998776542 34689999999987 678999
Q ss_pred CCeEEEEECCCCce--EEEe------c---CcccCeEEEEEcCCCCEEEEEE
Q 002881 208 DHTAKVWDYQTKSC--VQTL------E---GHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 208 dg~i~v~d~~~~~~--~~~~------~---~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
||.+++|+...+.. ..++ . +|...|.+++|.+++.++++-+
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999999887664 5555 2 3678899999999988887644
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=2.9e-11 Score=126.86 Aligned_cols=166 Identities=10% Similarity=0.063 Sum_probs=130.5
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc-----------eeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 85 (871)
++..+++++...++++|+.++ +.+|+.++.. ..... .+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999998775 6669865332 11223 3556 999999 99999999 889999999
Q ss_pred CCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002881 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (871)
+.+.........|...+.++.+.+. .+++++.||.|.+||+.++.. .. +...|+|++|+| ++ ++.|..||
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSp-kG--~~vg~~dg 182 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTN-SQ--LAVLLKDR 182 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECS-SE--EEEEETTS
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcC-Cc--eEEEEcCC
Confidence 9887766667778888988887765 389999999999999997733 22 345799999999 44 78899999
Q ss_pred cEEEEECCCCCC--eEEE------e---cCCCCeeEEEEeecCC
Q 002881 166 TIKIWNLGSPDP--NFTL------D---AHQKGVNCVDYFTGGD 198 (871)
Q Consensus 166 ~i~i~d~~~~~~--~~~~------~---~~~~~i~~i~~~~~~~ 198 (871)
++++|+...... ...+ . +|...|.++.|.+++.
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 999998876654 4455 2 3678899999998765
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.31 E-value=2.2e-09 Score=112.32 Aligned_cols=223 Identities=11% Similarity=-0.015 Sum_probs=152.3
Q ss_pred EEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe
Q 002881 60 VRSAKFVARKQW-VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF 138 (871)
Q Consensus 60 v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 138 (871)
.....|+|++.. +++...++.|..|+..+++.. .+. ....+.+++|+|+|+++++ +.+ .|.+||..++. .....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~-~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV-LTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC-EEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCc-EEEEe
Confidence 467889998554 455556889999999877543 333 3467999999999876664 444 59999998773 33322
Q ss_pred ec----CCcceEEEEEecCCCCEEEEEEC------CCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC
Q 002881 139 EG----HSHYVMQVTFNPKDTNTFASASL------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (871)
Q Consensus 139 ~~----~~~~v~~~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d 208 (871)
.. ....+..+.++| +++++++... .+.|..++ +++ ...+.......+.++|+|+++. ++++.+.+
T Consensus 126 ~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~-lyv~~~~~ 200 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTT-GYFVDTKV 200 (326)
T ss_dssp CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCE-EEEEETTT
T ss_pred eCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCE-EEEEECCC
Confidence 21 124588999999 6666655432 24566666 333 2233223345678999998873 33444557
Q ss_pred CeEEEEECC--CC-c-----eEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEe
Q 002881 209 HTAKVWDYQ--TK-S-----CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYM 280 (871)
Q Consensus 209 g~i~v~d~~--~~-~-----~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~ 280 (871)
+.|.+|++. ++ . ....+......+..++++++|.+.++...++.|..|+. +++....+..+...+.+++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence 899999986 55 3 12233333455778999999988777767789999997 677777777776789999998
Q ss_pred -eCCCeEEEEEcCC
Q 002881 281 -KSSRRIVIGYDEG 293 (871)
Q Consensus 281 -~~~~~l~~g~~dg 293 (871)
++++.|.+++..+
T Consensus 280 g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 280 GPDASRLLVTSARE 293 (326)
T ss_dssp STTSCEEEEEEBCT
T ss_pred cCCCCEEEEEecCC
Confidence 8888887766544
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.29 E-value=2.3e-09 Score=112.28 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=150.4
Q ss_pred CCEEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 002881 16 ERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 94 (871)
.-..+..|+|++..++ +...++.|..||..+++.. .+. ....+.++.|+|+|+++++. .+ .|.+||..+++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 3457889999866554 4555789999998877543 333 35679999999999876654 44 499999988776443
Q ss_pred Ecc----CCCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE-EEEC
Q 002881 95 FEA----HTDYIRCVAVHPTLPYVLSSSD------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASL 163 (871)
Q Consensus 95 ~~~----~~~~i~~i~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~ 163 (871)
... ....+..++++|+|++.++... .+.|..++ ++ ...... .+......++|+| +++.++ +.+.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~-~~~~~~~~i~~s~-dg~~lyv~~~~ 199 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLF-ADISIPNSICFSP-DGTTGYFVDTK 199 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEE-EEESSEEEEEECT-TSCEEEEEETT
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEee-CCCcccCCeEEcC-CCCEEEEEECC
Confidence 321 1235889999999986665432 24566666 34 333322 2333467899999 666554 4455
Q ss_pred CCcEEEEECC--CC-CC--eEEE---ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEE
Q 002881 164 DRTIKIWNLG--SP-DP--NFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAV 235 (871)
Q Consensus 164 dg~i~i~d~~--~~-~~--~~~~---~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i 235 (871)
++.|.+||+. ++ .. ...+ ......+..+.+.+++. +.++...++.|..||. +++.+..+..+...++++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~--lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH--IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC--EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC--EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 7899999986 44 21 1122 22334567788877765 5666656789999998 577777777677779999
Q ss_pred EEc-CCCCEEEEEECC
Q 002881 236 CFH-PELPIIITGSED 250 (871)
Q Consensus 236 ~~~-p~~~~l~~~~~d 250 (871)
+|+ |++..|++++..
T Consensus 277 af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 277 AFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEESTTSCEEEEEEBC
T ss_pred EEecCCCCEEEEEecC
Confidence 998 888777655543
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=6.1e-10 Score=115.56 Aligned_cols=228 Identities=10% Similarity=0.006 Sum_probs=154.9
Q ss_pred cccCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002881 11 LAQRSERVKSVDLHPSEPW-ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 11 ~~~h~~~v~~i~~s~~~~~-la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 89 (871)
+..+........|+|+++. +++...++.|..|+. +++ ...+..+...+..++++++|+.+++...++.|.+|+.+ +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 3344556788999999994 455556889999997 454 34555567789999999999966665566889999976 5
Q ss_pred cEEEEEcc----CCCCeEEEEEcCCCCEEEE----EEC-------------CCeEEEEECCCCceEEEEeecCCcceEEE
Q 002881 90 DKVKVFEA----HTDYIRCVAVHPTLPYVLS----SSD-------------DMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (871)
Q Consensus 90 ~~~~~~~~----~~~~i~~i~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 148 (871)
+....... ....+..++++|+|...++ |+. .+.|..+|..++ ...... .......+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~~~~~--~~~~p~gl 193 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRMA--DLDHPNGL 193 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CCEEEE--EESSEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cEEEEe--cCCCCcce
Confidence 54322221 1234678999999987776 332 256788887665 232222 33456789
Q ss_pred EEecCCCCEEEEEECC------CcEEEEECCCCCCe--EEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC
Q 002881 149 TFNPKDTNTFASASLD------RTIKIWNLGSPDPN--FTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 149 ~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 219 (871)
+|+| +++.++++... +.|.+|++..+... ..+ .........+.+.++++ +.++..+ .|.+|+. ++
T Consensus 194 ~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~---lwv~~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 194 AFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW---LWSSSGT-GVCVFDS-DG 267 (305)
T ss_dssp EECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC---EEECCSS-EEEEECT-TS
T ss_pred EEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC---EEEecCC-cEEEECC-CC
Confidence 9999 77777776665 78999998654310 111 11233445677877776 5555544 5999998 47
Q ss_pred ceEEEecCcccCeEEEEEcCCCCEEEEEECCC
Q 002881 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 220 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg 251 (871)
+.+..+..+. .+.+++|+|+++.|..++.++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 7777776554 588999999998888888754
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.26 E-value=1.5e-09 Score=112.57 Aligned_cols=237 Identities=8% Similarity=-0.010 Sum_probs=161.1
Q ss_pred eeEEeeecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002881 49 MAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (871)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd 127 (871)
.+..+...........|+|+++ .++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 3444544555678899999999 5566667899999997 444 345555677899999999998665555567899999
Q ss_pred CCCCceEEEEeecC----CcceEEEEEecCCCCEEEE----EEC-------------CCcEEEEECCCCCCeEEEecCCC
Q 002881 128 WEKGWMCTQIFEGH----SHYVMQVTFNPKDTNTFAS----ASL-------------DRTIKIWNLGSPDPNFTLDAHQK 186 (871)
Q Consensus 128 ~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~ 186 (871)
.+ + ......... ...+..+.++| ++++.++ |.. .+.|..+|..+++..... ...
T Consensus 114 ~~-g-~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 114 AD-G-QAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp TT-S-CEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CC-C-CEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 86 4 222222111 12356799999 7777775 332 256777887666544333 344
Q ss_pred CeeEEEEeecCCcCEEEEEeCC------CeEEEEECCCCceE--EEe-cCcccCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 187 GVNCVDYFTGGDKPYLITGSDD------HTAKVWDYQTKSCV--QTL-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 187 ~i~~i~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~--~~~-~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
..+.++|+|+++ .++++... +.|.+|++..+... ..+ .........++++++|++.+ ++.+ .|.+|+
T Consensus 189 ~p~gl~~spdg~--~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~ 264 (305)
T 3dr2_A 189 HPNGLAFSPDEQ--TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFD 264 (305)
T ss_dssp SEEEEEECTTSS--EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEEC
T ss_pred CCcceEEcCCCC--EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEEC
Confidence 567899999987 46665554 78999998754311 111 11233456789999998444 4444 599999
Q ss_pred CCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 258 ATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 258 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
. .++....+..+. .+.+++|+++++.|.+++.++..++.
T Consensus 265 ~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 265 S-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp T-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred C-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 7 577777776664 58899999999999999888776653
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=1.6e-10 Score=122.23 Aligned_cols=261 Identities=10% Similarity=0.041 Sum_probs=169.4
Q ss_pred CCEEEEEEcCCCCEEEEEE--cCCeEEEEeCCCCceeEEee-------ecCCCEEEEEEeCCCCEEEEEeC-----CCeE
Q 002881 16 ERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFE-------VTELPVRSAKFVARKQWVVAGAD-----DMFI 81 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~--~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 81 (871)
..+..++++|+|+.+++.. .++.+.||.+.+++. ..+. .+-..+..++++++++..++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6799999999999877753 234355555545543 2221 23457999999999876555433 5789
Q ss_pred EEEECCCCcEEEEEccC------CCCeEEEEEcCCCCEEEEE-E---CCCeEEEEECCCCceEEEEeecCCcceE-EEEE
Q 002881 82 RVYNYNTMDKVKVFEAH------TDYIRCVAVHPTLPYVLSS-S---DDMLIKLWDWEKGWMCTQIFEGHSHYVM-QVTF 150 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~-~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~ 150 (871)
.+||+.+++.+..+..+ ...+..+++++++..++++ + .++.|.+||+.++ .....+.+|..... ...+
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccccccce
Confidence 99999999877766432 2356889999865555544 3 5789999999877 45555544322110 1233
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCC-eEEEEECC---CCc-----e
Q 002881 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQ---TKS-----C 221 (871)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg-~i~v~d~~---~~~-----~ 221 (871)
.+ ++..+.+.+.+|.+..|. ..++.++++|+++ .++++...+ .+..++.. .+. .
T Consensus 175 ~~-~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~--~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 175 VI-DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENE--WLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp EE-TTEECBEECTTSCEECCC--------------CCEEEEEECTTSC--EEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred eE-CCEEEEeccCCCceecee--------------cccceeEeccCCC--EEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 44 455666666777765543 2457899999886 566665554 56555532 111 0
Q ss_pred EE--EecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC-CccEEEEEEeeCCCeEEEEEcCCeE
Q 002881 222 VQ--TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 222 ~~--~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~g~~dg~i 295 (871)
.. ...++......++++++|.++++...++.|.+||..+++........ ...+.++++.+++.++++.+..+.+
T Consensus 238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 238 GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 00 11123334567999999999999888999999998567654433322 3568899999998877776655444
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=8.2e-10 Score=128.60 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=153.2
Q ss_pred cCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC---------
Q 002881 56 TELPVRSAKFVARKQWVVAGAD-----DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM--------- 121 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------- 121 (871)
+...+..++|||||++|+.+.+ ...|++||+.+++.+.... +......++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 3446888999999999985432 3579999999998654311 11113567899 999999888774
Q ss_pred ----eEEEEECCCCceE-EEEee--c-CCcceEEEEEecCCCCEEEEEEC----CCcEEEEECCCCC-CeEEEecCCCCe
Q 002881 122 ----LIKLWDWEKGWMC-TQIFE--G-HSHYVMQVTFNPKDTNTFASASL----DRTIKIWNLGSPD-PNFTLDAHQKGV 188 (871)
Q Consensus 122 ----~i~iwd~~~~~~~-~~~~~--~-~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~i 188 (871)
.|++|++.+.... ..++. . |.....++.|+| ++++++.... +..|.++|+.++. ....+..+....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 3999999876321 22332 2 344578899999 6666654332 2489999997764 445555555555
Q ss_pred eEEEEeecCCcCEEEEEeC---CCeEEEEECCCCce--EEEecCcccCeEEEEEcCCCCEEEEEECCC---cEEEEeCCC
Q 002881 189 NCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATT 260 (871)
Q Consensus 189 ~~i~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg---~v~iwd~~~ 260 (871)
... ++++++. +++.... .+.|..+++.++.. ...+..+...+. .|+++++.|+....++ .|++|++..
T Consensus 284 ~~~-~~~~g~~-l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 284 VSL-VDNKGST-LYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEE-EEEETTE-EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred EEE-EeccCCE-EEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 544 6677764 4444433 36899999987654 344555555554 8899998877666544 689999875
Q ss_pred CeEEEEEec-CCccEEEEEEeeCCCeEEEEEcC
Q 002881 261 YRLENTLNY-GLERVWAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 261 ~~~~~~~~~-~~~~i~~i~~~~~~~~l~~g~~d 292 (871)
+ ....+.. ..+.+..+.++++++.++....+
T Consensus 360 ~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 360 K-RVREVALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp C-EEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred C-eeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence 4 4444443 33457777888888888776654
No 224
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.25 E-value=6.5e-07 Score=106.14 Aligned_cols=445 Identities=9% Similarity=0.088 Sum_probs=252.8
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeec-CC---CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-EL---PVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 90 (871)
...|.++...++|. |.+|+.+| +..||..+++... +... .. .|.++...++|...+ ++. +-|..|+..+++
T Consensus 87 ~n~I~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi-~t~-~gl~~~~~~~~~ 161 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VWIGTRDG-LSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLI-STP-EGLIMFDIKESK 161 (795)
T ss_dssp CSCEEEEEECTTSC-EEEEESSC-EEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEE-EET-TEEEEEETTTTE
T ss_pred ccceeEEEECCCCC-EEEEeCCc-hheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEE-EEC-CceEEEECCCCE
Confidence 45799999999987 55666655 8899987765433 3221 11 288888888886544 455 458899987654
Q ss_pred EEEEEccC-CCC-eEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEE-eecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 91 KVKVFEAH-TDY-IRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI-FEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 91 ~~~~~~~~-~~~-i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
.......+ ... |.++...+++. |.+++.++.|..|+..++ ..... .......|.++...+ + ..+..++.++-+
T Consensus 162 ~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~-~-g~lwigt~~~Gl 237 (795)
T 4a2l_A 162 FIDDSFSTAMHKTIASTLYRQGDQ-IYIGTSTDGLYTYSITQK-TFEKVIPILGTKQIQAILQQS-P-TRIWVATEGAGL 237 (795)
T ss_dssp EECSSSCHHHHTCCEEEEEEETTE-EEEEESSSCEEEEETTTC-CEEECC----CCCEEEEEEEE-T-TEEEEEEBSSCE
T ss_pred EEeccCCCCCCcceEEEEECCCCC-EEEEECCCCEEEEeCCCC-eEEEecCCCCCCeeEEEEEcC-C-CCEEEEECCCCe
Confidence 32211111 123 88888887774 556777656889998776 33222 112345688888776 3 456666665568
Q ss_pred EEEECCCCCCeEEEec--------CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC-------cccCe
Q 002881 168 KIWNLGSPDPNFTLDA--------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------HTHNV 232 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------~~~~v 232 (871)
..||..+++.. .+.. ....|.++...+++. +.+|+.+ -|.+||..++........ ....|
T Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i 312 (795)
T 4a2l_A 238 FLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNR---LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSV 312 (795)
T ss_dssp EEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSC---EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCE
T ss_pred EEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCC---EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcE
Confidence 89998665432 2221 134578887766654 7777766 588999876654332211 23569
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe------cCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCc---
Q 002881 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN------YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE--- 303 (871)
Q Consensus 233 ~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~--- 303 (871)
.++...++|. |..|+.++-|..|+..+........ .....|.++...++|+ |-+|+.++-+..+.....
T Consensus 313 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 313 RSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp EEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE
T ss_pred EEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE
Confidence 9999999886 5567777789999866554322111 1235689998888776 555776644444322211
Q ss_pred ----------------ceEEE--eCCCcEEEEe-e-cceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEECC
Q 002881 304 ----------------PVASM--DNSGKIIWAK-H-NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (871)
Q Consensus 304 ----------------~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 363 (871)
.+.++ +.++..+|.. . ..+..++. .+++...+...........+.++...+
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~---------~~~~~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR---------NSGQVENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET---------TTCCEEEECTTTSCCSCSCEEEEEECS
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC---------CCCcEEEeecCCCCcCCCeeEEEEECC
Confidence 12222 2344423332 1 23333321 222211111100001123456778888
Q ss_pred CCCEEEEEcCCcEEEEEeeccc-----c------cCcCceeEEEEecCCcEEEEecCCeEEEeecccccceeee---c--
Q 002881 364 NGRFVVVCGDGEYIIYTALAWR-----N------RSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVR---P-- 427 (871)
Q Consensus 364 ~g~~lav~~~~~~~i~~~~~~~-----~------~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~~~~~~~---~-- 427 (871)
+|++.+.+. +.+.+|+....+ . .....+.++...++|...+... +.|..|+...... .+. .
T Consensus 462 ~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~ 538 (795)
T 4a2l_A 462 EGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVS 538 (795)
T ss_dssp SSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSC
T ss_pred CCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCC
Confidence 888766655 667777643321 0 0123567777778887666555 5577776543221 111 0
Q ss_pred Cccce---eee---cCcEEEEEeCCeEEEEeccCCcEEEEEE-------cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 428 TFSAE---RIY---GGTLLAMCSNDFICFYDWAECRLIRRID-------VTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 428 ~~s~~---~i~---~~~~La~~~~~~v~~~d~~~~~~~~~~~-------~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
..... .|. .|. |-+++.+.|..||..+++.. .+. ..|.++...++|.+.+.+ ..++..+.
T Consensus 539 ~l~~~~i~~i~~d~~g~-lWigT~~Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~ 611 (795)
T 4a2l_A 539 NVTKLFTNCIYEASNGI-IWVGTREGFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCFN 611 (795)
T ss_dssp GGGGSCEEEEEECTTSC-EEEEESSCEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEE
T ss_pred CCCCCeeEEEEECCCCC-EEEEeCCCceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-CCceEEEc
Confidence 01111 121 244 33444447888997766543 332 247778888889866554 67777664
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=4.4e-08 Score=104.96 Aligned_cols=256 Identities=10% Similarity=-0.041 Sum_probs=168.2
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecC---------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTE---------LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 97 (871)
+..+++++.++.|..+|..+|+.+-...... ..+.+ ....++..+++++.++.|..+|..+++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5568888889999999999999876666421 22322 2223566788899999999999999998877764
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcce-----EEEEEecCCCCEEEEEECCCcEEEEEC
Q 002881 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV-----MQVTFNPKDTNTFASASLDRTIKIWNL 172 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (871)
........... +..+++++.++.|..+|..++...-. ........ ...... +..+++++.++.+..+|.
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~-~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWT-VNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE-EECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEET
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEE-EeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEEC
Confidence 43322222222 45788899999999999988843333 22211110 112222 356788888999999999
Q ss_pred CCCCCeEEEecCCCC----------eeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCC
Q 002881 173 GSPDPNFTLDAHQKG----------VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (871)
Q Consensus 173 ~~~~~~~~~~~~~~~----------i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~ 242 (871)
.+++........... +...-.. .+. .+++++.++.+..+|..+++.+..... .....+... +.
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~--~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~ 278 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNG--VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GN 278 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEE-ETT--EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TT
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEE-ECC--EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CC
Confidence 998877665432110 1010011 122 588888899999999999998876653 233444443 56
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEEecC-CccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 243 IIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.+++++.+|.|..+|..+++........ ...+.+... .+..|.+++.+|.+...
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEE
Confidence 7888888999999999999988776622 222222222 25677788888877653
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.22 E-value=7.5e-10 Score=116.05 Aligned_cols=256 Identities=9% Similarity=-0.068 Sum_probs=172.9
Q ss_pred CCCEEEEEEc-CC----eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEECCCCc
Q 002881 26 SEPWILASLY-SG----TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA----------DDMFIRVYNYNTMD 90 (871)
Q Consensus 26 ~~~~la~~~~-dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~ 90 (871)
...++++... ++ .|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 3345555544 34 8889999999999999877777 799999999999886 36899999999999
Q ss_pred EEEEEccC-------CCCeEEEEEcCCCCEEEEEEC--CCeEEE--EECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002881 91 KVKVFEAH-------TDYIRCVAVHPTLPYVLSSSD--DMLIKL--WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 91 ~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (871)
.+..+..+ ......++++|+|++++++.. +..+.+ +|..+ . ..+... .. ....|.+...++
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v-~~i~v~-~~---~~~~p~g~~~~~ 179 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---D-QLTKSA-SC---FHIHPGAAATHY 179 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---E-EEEECS-SC---CCCEEEETTEEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---c-eEEECC-Cc---eEEccCCCeEEE
Confidence 99988643 123567999999999999874 467888 88876 2 222111 11 123343556777
Q ss_pred EEECCCcEEEEECCC-----CCCeE----EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc--eEEEecCc
Q 002881 160 SASLDRTIKIWNLGS-----PDPNF----TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS--CVQTLEGH 228 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~-----~~~~~----~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~ 228 (871)
+.+.||.+.+.|+.+ ++... .+.....+. . ++++. .++..+. +.+.+.|..++. .+..+...
T Consensus 180 ~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~--~~~~vs~-~~V~viD~~~~~~~v~~~~~~~ 252 (368)
T 1mda_H 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPG--MLVWAVA-SSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTT--EEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred EEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCC--EEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence 777889998889876 22211 011112232 2 55554 3444445 899999986533 22222110
Q ss_pred ----------ccCeEEEEEcCCCCEEEEEEC-C--------CcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEE
Q 002881 229 ----------THNVSAVCFHPELPIIITGSE-D--------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 229 ----------~~~v~~i~~~p~~~~l~~~~~-d--------g~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g 289 (871)
......+.++|+++.++++.. . +.+.++|+.+++.+..+..+ ...+.++++|||+.++++
T Consensus 253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEE
T ss_pred cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEE
Confidence 011112689999998876543 2 35679999999998888766 468999999999865554
Q ss_pred -E-cCCeEEEec
Q 002881 290 -Y-DEGTIMVKI 299 (871)
Q Consensus 290 -~-~dg~i~i~~ 299 (871)
. .++.+.+..
T Consensus 332 ~~~~~~~VsVID 343 (368)
T 1mda_H 332 NSAGTEVLDIYD 343 (368)
T ss_dssp EETTTTEEEEEE
T ss_pred ccCCCCeEEEEE
Confidence 4 478887753
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.20 E-value=6.4e-09 Score=120.01 Aligned_cols=267 Identities=10% Similarity=0.097 Sum_probs=178.7
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCC----------E-EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELP----------V-RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
+..|++++.++.|.-+|..+|+.+-.+...... + ..+.. .+..+++++.|+.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 456778888899999999999998877643210 0 11222 4568899999999999999999998877
Q ss_pred ccC--CCCeEEEEEcC---CCCEEEEEE------CCCeEEEEECCCCceEEEEeec-CC---------------------
Q 002881 96 EAH--TDYIRCVAVHP---TLPYVLSSS------DDMLIKLWDWEKGWMCTQIFEG-HS--------------------- 142 (871)
Q Consensus 96 ~~~--~~~i~~i~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~-~~--------------------- 142 (871)
... ......+..+| ++ .+++++ .+|.|..||.+++...-..... +.
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 642 11111111112 33 455554 3689999999998544332211 00
Q ss_pred --------cceEEEEEecCCCCEEEEEECCCc-------------------EEEEECCCCCCeEEEecCC---------C
Q 002881 143 --------HYVMQVTFNPKDTNTFASASLDRT-------------------IKIWNLGSPDPNFTLDAHQ---------K 186 (871)
Q Consensus 143 --------~~v~~~~~~p~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~---------~ 186 (871)
.....++++| +.+.+++++.++. |..+|..+++....+.... .
T Consensus 227 w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp HHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 0112577888 6778888887764 9999999999888776421 1
Q ss_pred CeeEEEEeecCC-cCEEEEEeCCCeEEEEECCCCceEEEecCccc-----------------------------------
Q 002881 187 GVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH----------------------------------- 230 (871)
Q Consensus 187 ~i~~i~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----------------------------------- 230 (871)
++.......++. ..+++.++.+|.++++|..+|+.+........
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 222222223332 23688899999999999999998744321110
Q ss_pred ----CeEEEEEcCCCCEEEEEEC---------------------------------------------CCcEEEEeCCCC
Q 002881 231 ----NVSAVCFHPELPIIITGSE---------------------------------------------DGTVRIWHATTY 261 (871)
Q Consensus 231 ----~v~~i~~~p~~~~l~~~~~---------------------------------------------dg~v~iwd~~~~ 261 (871)
.-..++++|+..++++.+. +|.|+.||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 0112688898887777532 377999999999
Q ss_pred eEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 262 RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 262 ~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+....+..+. +.+.-.+...+..+++|+.||.++.+
T Consensus 466 ~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~ 501 (689)
T 1yiq_A 466 QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAY 501 (689)
T ss_dssp EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEE
Confidence 9998887663 33444667788899999999998875
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.18 E-value=5.4e-10 Score=117.14 Aligned_cols=245 Identities=8% Similarity=-0.007 Sum_probs=163.9
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEeCCCCceeEEeeecC-------CCEEEEEEeCCCCEEEEEeC--CCe
Q 002881 20 SVDLHPSEPWILASL----------YSGTVCIWNYQSQTMAKSFEVTE-------LPVRSAKFVARKQWVVAGAD--DMF 80 (871)
Q Consensus 20 ~i~~s~~~~~la~~~----------~dg~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--dg~ 80 (871)
.+.++||+++++++. .++.|.+||..+++.+.++..+. .....++++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999999886 36889999999999999987541 24678999999999999875 467
Q ss_pred EEE--EECCCCcEEEEEccCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC----CceEEE----EeecCCcceEEEE
Q 002881 81 IRV--YNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEK----GWMCTQ----IFEGHSHYVMQVT 149 (871)
Q Consensus 81 i~i--w~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~iwd~~~----~~~~~~----~~~~~~~~v~~~~ 149 (871)
+.+ +|..+ +..+... +. ....|++ ..+++.+.||.+.+.|+++ ...... .+.....+. .
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~ 218 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q 218 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred EEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence 888 88876 4444321 11 1223443 3444556788888888876 212211 011112233 3
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCCCeE--EEec----------CCCCeeEEEEeecCCcCEEEEE-e---C-----C
Q 002881 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDA----------HQKGVNCVDYFTGGDKPYLITG-S---D-----D 208 (871)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~----------~~~~i~~i~~~~~~~~~~l~~~-~---~-----d 208 (871)
.+ ++..++..+. +.+.+.|..+..... .+.. .......+.++|+++. ++++ . . +
T Consensus 219 -~~-~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~--lyV~~~~~~~~~~~~~ 293 (368)
T 1mda_H 219 -AN-YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG--IMILTVEHSRSCLAAA 293 (368)
T ss_dssp -ET-TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE--EEEEEEECSSCTTSCE
T ss_pred -cc-cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE--EEEEeccccCcccccC
Confidence 55 4455555555 999999986543211 1110 0111223678998874 4433 2 1 2
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCC-EEEEEE-CCCcEEEEeCCCCeEEEEEecCCccEEEEEEee
Q 002881 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (871)
Q Consensus 209 g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 281 (871)
+.+.++|+.+++.+..+.... ....+.|+|+|+ .+++.. .++.|.++|+.+++.+.++..+ ...+.+++.+
T Consensus 294 ~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~P~~i~~~~ 366 (368)
T 1mda_H 294 ENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSVQN 366 (368)
T ss_dssp EEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEECCC
T ss_pred CCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CCCCEEEeec
Confidence 356699999999988887443 578999999997 566666 5899999999999999998866 4456666543
No 229
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=1.6e-05 Score=93.85 Aligned_cols=429 Identities=12% Similarity=0.045 Sum_probs=246.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeee----------cCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV----------TELPVRSAKFVARKQWVVAGADDMFIRVY 84 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 84 (871)
...|.+|.-.++|. |-.|..+| +..||-.+ .+.+.. ....|+++.-.++|..|.+|+.++-+..|
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~ 92 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAY 92 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceE
Confidence 45799999999885 77777777 66677433 233321 13458999888888756678887568999
Q ss_pred ECCCCcEEEEEcc-------CCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCceEEEEee-----cCCcceEEEEE
Q 002881 85 NYNTMDKVKVFEA-------HTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-----GHSHYVMQVTF 150 (871)
Q Consensus 85 ~~~~~~~~~~~~~-------~~~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~ 150 (871)
|..+.+....... ....|.++...+ ++ .|.+++.++.|..||..++ ....... .....|.++..
T Consensus 93 d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~ 170 (781)
T 3v9f_A 93 NYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATG-KFTHYNKSTVPALPSEQTWTATE 170 (781)
T ss_dssp ETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTT-EEEEESTTTCTTCSCCCEEEEEE
T ss_pred CCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCC-eEEeeccCcccCCCccceEEEEE
Confidence 9887665433111 123688888877 65 5667775556889998776 3333211 11245788877
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCCCCeEEEe--------cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceE
Q 002881 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (871)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 222 (871)
.+ ...+..++.++-|..||..+.+.. .+. .....|.++...+++. |.+|+.+ -+.+||..+++..
T Consensus 171 d~--~g~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~-Gl~~~d~~~~~~~ 243 (781)
T 3v9f_A 171 AE--DGKLYIGHVEGGLSILSLNDKSVK-HFVHDPQNPNSLPGNDVRCIYKDTNGN---IWIGTSK-GLALFNANTETFT 243 (781)
T ss_dssp EE--TTEEEEEETTTEEEEEETTTTEEE-EECC--------CCSSEEEEEECTTCC---EEEEETT-EEEEEETTTTEEE
T ss_pred CC--CCCEEEEecCCCeEEEcCCCCceE-eeecCCCCcccCCCCceeEEEEcCCCC---EEEEeCC-cHheECCCCCcEE
Confidence 75 445666777767889998665322 111 1134577776655554 6667766 6889998765432
Q ss_pred EEec-------CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe--------------cCCccEEEEEEee
Q 002881 223 QTLE-------GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN--------------YGLERVWAIGYMK 281 (871)
Q Consensus 223 ~~~~-------~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~i~~i~~~~ 281 (871)
.... .....|.++...++|. |..|+..+-|.++|..+++...... .....|.++...+
T Consensus 244 ~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~ 322 (781)
T 3v9f_A 244 NFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS 322 (781)
T ss_dssp C-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS
T ss_pred EEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC
Confidence 2111 1245689999888875 5566665678889987665332211 1235688888887
Q ss_pred CCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCccccCCceEEE
Q 002881 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (871)
Q Consensus 282 ~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (871)
+|. |-+|+.++-+..+.........+... . .... ...-....+.++..
T Consensus 323 ~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-----------------~-------~~~~-------~~~l~~~~v~~i~~ 370 (781)
T 3v9f_A 323 FNN-IWIGTWGGGINFISNAPPTFHTWSYS-----------------P-------TQMN-------ESSLSNKVVSSVCD 370 (781)
T ss_dssp SCC-EEEEEBSSCEEEECSSCCSCEEEC----------------------------CCC-------SSCCSSSCEEEEEE
T ss_pred CCC-EEEEecCCeEEEeCCCCCcceeeccC-----------------c-------cccc-------cCCCCCcceEEEEE
Confidence 776 45566443333321111111111000 0 0000 00001123457777
Q ss_pred CCCCCEEEEEcCCcEEEEEeecccc--------cCcCceeEEEEecCCcEEEEecCCeEEEeecccccceeeec-Cccce
Q 002881 362 NPNGRFVVVCGDGEYIIYTALAWRN--------RSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP-TFSAE 432 (871)
Q Consensus 362 s~~g~~lav~~~~~~~i~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~s~~ 432 (871)
.++|++.+...++.+..|+...... .....+.++...++|.+.+...++.+..++........+.. .....
T Consensus 371 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 450 (781)
T 3v9f_A 371 DGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELL 450 (781)
T ss_dssp CTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCC
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCC
Confidence 7888766555467777776432211 12245667777777777665555678777654322222211 01111
Q ss_pred ---eee--cCcEEEEEeCCeEEEEeccCCcEEEEEE--------cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 433 ---RIY--GGTLLAMCSNDFICFYDWAECRLIRRID--------VTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 433 ---~i~--~~~~La~~~~~~v~~~d~~~~~~~~~~~--------~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
.+. ....|-+++.+.|..||..+++...... ..|.++...++|+..+.....+.+.+.
T Consensus 451 ~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT 521 (781)
T ss_dssp CEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred eEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence 111 1234555555789999988765433221 357888889999977766557776653
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=1.2e-08 Score=117.63 Aligned_cols=266 Identities=13% Similarity=0.087 Sum_probs=182.5
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCC-----------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL-----------PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
+..|++++.++.|.-+|..+|+.+-.+..... ....++. .+..+++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 44677777789999999999998877764321 0112222 4678999999999999999999999888
Q ss_pred ccC-C----CCeEE-EEEcCCCCEEEEEEC------CCeEEEEECCCCceEEEEeecCCc--------------------
Q 002881 96 EAH-T----DYIRC-VAVHPTLPYVLSSSD------DMLIKLWDWEKGWMCTQIFEGHSH-------------------- 143 (871)
Q Consensus 96 ~~~-~----~~i~~-i~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------------------- 143 (871)
..+ . ..+.+ ... .+..+++++. +|.|..+|..++...-........
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 754 1 11211 111 1345666553 689999999998544333221100
Q ss_pred -----------ceEEEEEecCCCCEEEEEECCC-------------------cEEEEECCCCCCeEEEecCC--------
Q 002881 144 -----------YVMQVTFNPKDTNTFASASLDR-------------------TIKIWNLGSPDPNFTLDAHQ-------- 185 (871)
Q Consensus 144 -----------~v~~~~~~p~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~-------- 185 (871)
....++++| +.+.+++++.++ .|..+|..+++....++...
T Consensus 233 g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 113567888 677888877664 59999999999887765422
Q ss_pred -CCeeEEEEeecCC-cCEEEEEeCCCeEEEEECCCCceEEEecCcccC-----------e--------------------
Q 002881 186 -KGVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-----------V-------------------- 232 (871)
Q Consensus 186 -~~i~~i~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-----------v-------------------- 232 (871)
.....+....+++ ..+++.++.+|.++++|..+|+.+..+.....+ +
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G 391 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG 391 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence 1222333333442 137899999999999999999988766422100 1
Q ss_pred ----EEEEEcCCCCEEEEEECC-------------------------------------------CcEEEEeCCCCeEEE
Q 002881 233 ----SAVCFHPELPIIITGSED-------------------------------------------GTVRIWHATTYRLEN 265 (871)
Q Consensus 233 ----~~i~~~p~~~~l~~~~~d-------------------------------------------g~v~iwd~~~~~~~~ 265 (871)
..++++|++.++++...+ |.|..||+.+++.+.
T Consensus 392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W 471 (677)
T 1kb0_A 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW 471 (677)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence 146889988888776432 789999999999988
Q ss_pred EEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 266 TLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 266 ~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.+... .+++...+...+..+++++.+|.++++
T Consensus 472 ~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 472 SVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp EEEES-SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred ecCCC-CCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 88755 345566677888889999999998875
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.15 E-value=8.5e-08 Score=97.10 Aligned_cols=252 Identities=10% Similarity=0.034 Sum_probs=162.5
Q ss_pred CCEEEEEEcCCeEEEEeCCCCce-----eEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEEEccCCC
Q 002881 27 EPWILASLYSGTVCIWNYQSQTM-----AKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVKVFEAHTD 100 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~ 100 (871)
|++|+.+. .+.|+.+++..... ...+......+..++|++++..|+.+. .++.|..++.++......+.....
T Consensus 1 ~~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CcEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45666665 35788898776532 112222234578999999877776665 478999999886654444433335
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC---CCcEEEEECCCCC
Q 002881 101 YIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLGSPD 176 (871)
Q Consensus 101 ~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~ 176 (871)
....+++++++..|+.+. ..+.|.+++++.. ...............++++| ++..++.+.. .+.|..+++....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCC-CEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 689999999766666554 4678999998764 22222322224578999999 4455544443 4688889886543
Q ss_pred CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEE
Q 002881 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (871)
Q Consensus 177 ~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iw 256 (871)
..............+++++++.. ++++-...+.|.++|+........+.. ......++.. ++.++++....+.|..+
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~-lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQ-LCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCCcEEEEcCCCCE-EEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEE
Confidence 32222233345788999987653 455556678999999875443333332 2334566665 34344444456899999
Q ss_pred eCCCCeEEEEEecCC-ccEEEEEEeeCCC
Q 002881 257 HATTYRLENTLNYGL-ERVWAIGYMKSSR 284 (871)
Q Consensus 257 d~~~~~~~~~~~~~~-~~i~~i~~~~~~~ 284 (871)
|..+++.+..+.... ...+.+++.|++.
T Consensus 235 d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 235 DLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eCCCCCceEEEccccccccceeeecCccC
Confidence 999999888887553 2577888888754
No 232
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=1.1e-05 Score=95.53 Aligned_cols=450 Identities=12% Similarity=0.068 Sum_probs=252.5
Q ss_pred CCEEEEEEcC--CCCEEEEEEcCCeEEEEeCCCCceeEEeee------cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 16 ERVKSVDLHP--SEPWILASLYSGTVCIWNYQSQTMAKSFEV------TELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 16 ~~v~~i~~s~--~~~~la~~~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
..|.++...+ ++. |.+++.++-|..||..+++... +.. ....|.++...++|. |.+|+.++-|..|+..
T Consensus 115 ~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~ 191 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK-LYIGHVEGGLSILSLN 191 (781)
T ss_dssp SCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE-EEEEETTTEEEEEETT
T ss_pred CcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC-EEEEecCCCeEEEcCC
Confidence 3688998887 665 5666645558889987765433 321 234588888877775 5556666568889988
Q ss_pred CCcEEEEEc-------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee-------cCCcceEEEEEecC
Q 002881 88 TMDKVKVFE-------AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-------GHSHYVMQVTFNPK 153 (871)
Q Consensus 88 ~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~p~ 153 (871)
+++...... .....|.++...+++. |.+|+.+ -+.+||..++ ....... .....|.++...+
T Consensus 192 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~- 267 (781)
T 3v9f_A 192 DKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN-IWIGTSK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLK- 267 (781)
T ss_dssp TTEEEEECC--------CCSSEEEEEECTTCC-EEEEETT-EEEEEETTTT-EEEC-----------CCCCEEEEEECT-
T ss_pred CCceEeeecCCCCcccCCCCceeEEEEcCCCC-EEEEeCC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECC-
Confidence 765433211 1235689999888876 5556665 6899998766 3222211 1235688888875
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCeEEEe--------------cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC
Q 002881 154 DTNTFASASLDRTIKIWNLGSPDPNFTLD--------------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 219 (871)
...+..|+..+-|.++|..+........ .....|.++...+.+. |-+|+.++-|..++..++
T Consensus 268 -~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~---lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 268 -DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN---IWIGTWGGGINFISNAPP 343 (781)
T ss_dssp -TSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC---EEEEEBSSCEEEECSSCC
T ss_pred -CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC---EEEEecCCeEEEeCCCCC
Confidence 4567778876678899987654322111 1234577777766654 888887788999987755
Q ss_pred ceEEEec---------CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE---ecCCccEEEEEEeeCCCeEE
Q 002881 220 SCVQTLE---------GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL---NYGLERVWAIGYMKSSRRIV 287 (871)
Q Consensus 220 ~~~~~~~---------~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~ 287 (871)
....... .....|.++...++|. |..|+.++-|..|+..++...... ......|+++...+++.. -
T Consensus 344 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-W 421 (781)
T 3v9f_A 344 TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-W 421 (781)
T ss_dssp SCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-E
T ss_pred cceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-E
Confidence 4322110 1235689999988876 556666667899997755432211 123467889888777764 4
Q ss_pred EEEcCCeEEEecCC-------------CcceEEE--eCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeee-cCc
Q 002881 288 IGYDEGTIMVKIGR-------------EEPVASM--DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKE-LGT 351 (871)
Q Consensus 288 ~g~~dg~i~i~~~~-------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 351 (871)
+|+.++-+..+... ...+.++ +.++.+.......+..++.. +++........ ...
T Consensus 422 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~---------~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 422 FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLA---------SKKVIHHYDTSNSQL 492 (781)
T ss_dssp EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESS---------SSSCCEEECTTTSSC
T ss_pred EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCC---------CCeEEecccCccccc
Confidence 46654333332221 1223333 23344333333333333322 11111111000 001
Q ss_pred cccCCceEEECCCCCEEEEEcCCcEEEEEeeccc--------ccCcCceeEEEEecCCcEEEEecCCeEEEeecccccce
Q 002881 352 CDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR--------NRSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKR 423 (871)
Q Consensus 352 ~~~~~~~~~~s~~g~~lav~~~~~~~i~~~~~~~--------~~~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~~~~ 423 (871)
....+..+...++|++.+.+.++.+..|+..... ......+.++...++|...+....|-+..|+.......
T Consensus 493 ~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ 572 (781)
T ss_dssp SCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE
T ss_pred ccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE
Confidence 1235667888899987776665566666532211 11123567777778887666555444377765433222
Q ss_pred eeec--Ccc---ceeee---cCcEEEEEeCCeEEEEeccCCcEEEEEEc---------ceeEEEEcCCCCEEEEEeCCeE
Q 002881 424 SVRP--TFS---AERIY---GGTLLAMCSNDFICFYDWAECRLIRRIDV---------TVKNLYWADSGDLVAIASDTSF 486 (871)
Q Consensus 424 ~~~~--~~s---~~~i~---~~~~La~~~~~~v~~~d~~~~~~~~~~~~---------~i~~i~~s~~~~~la~~~~~~~ 486 (871)
.+.. .+. ...+. .|. |-+++.+.|..||..+.+. ..+.. ...++...++|+ |.+++.+++
T Consensus 573 ~~~~~~gl~~~~i~~i~~d~~g~-lW~~t~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~-l~~g~~~Gl 649 (781)
T 3v9f_A 573 VFQRKEGLPNTHIRAISEDKNGN-IWASTNTGISCYITSKKCF-YTYDHSNNIPQGSFISGCVTKDHNGL-IYFGSINGL 649 (781)
T ss_dssp EECGGGTCSCCCCCEEEECSSSC-EEEECSSCEEEEETTTTEE-EEECGGGTCCSSCEEEEEEEECTTSC-EEEEETTEE
T ss_pred EccccCCCCCceEEEEEECCCCC-EEEEcCCceEEEECCCCce-EEecccCCccccccccCceEECCCCE-EEEECCCce
Confidence 2211 111 11111 243 4444555677888765543 33321 134667778887 566777887
Q ss_pred EEEE
Q 002881 487 YILK 490 (871)
Q Consensus 487 ~~l~ 490 (871)
.++.
T Consensus 650 ~~f~ 653 (781)
T 3v9f_A 650 CFFN 653 (781)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7764
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=4.2e-10 Score=118.43 Aligned_cols=299 Identities=12% Similarity=0.066 Sum_probs=187.5
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCC
Q 002881 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT 99 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 99 (871)
++....++. |.+++.++.|..|| .+++.......+...+.++...+++. +.+++.+ |..+|. +++....+..+.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCC
Confidence 445555665 67777788899999 88887665554444556677666665 5555554 888885 555443333222
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeE
Q 002881 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179 (871)
Q Consensus 100 ~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 179 (871)
.......+. +..+.+++.++.|..+|.. +.. ......+...+.++...+ ++ .+..++.++.|..+|.. ++...
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~-~g-~l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRFKTKKAIYATPIVSE-DG-TIYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECT-TS-CEEEECTTSEEEEECTT-SCEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEEcCCCceeeeeEEcC-CC-EEEEEcCCCEEEEECCC-CCEeE
Confidence 222333333 4578888889999999988 533 333333444455666665 34 47778888999999998 77666
Q ss_pred EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 180 ~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
........+.++...+++. +.+++ +.|..+| .+++...........+.++...++|. +.+++.++.|..++ .
T Consensus 171 ~~~~~~~~~~~~~~d~~g~---l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~ 242 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGT---IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-P 242 (330)
T ss_dssp EEECSSCCCSCCEECTTCC---EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-T
T ss_pred EEecCCCceeeeEEcCCCE---EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-C
Confidence 6665555566666655554 55666 7899999 77777777766666788888888875 55567778899898 4
Q ss_pred CCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCCcceEEEeCCCcEEEEeecceEEEEEeecCcceeccCC
Q 002881 260 TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDG 339 (871)
Q Consensus 260 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (871)
+++....+......+.++...+++ .|.+++.+|.+.. ++++++..|... +
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~----------~d~~g~~~~~~~-------~------------ 292 (330)
T 3hxj_A 243 DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYA----------INPDGTEKWNFE-------T------------ 292 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEE----------ECTTSCEEEEEE-------C------------
T ss_pred CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEE----------ECCCCcEEEEEE-------c------------
Confidence 566666665544434444554444 5666777765544 233444433311 0
Q ss_pred CeeeeeeeecCccccCCceEEECCCCCEEEEEcCCcEEEEEe
Q 002881 340 ERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTA 381 (871)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~~~~i~~~ 381 (871)
....+..+...++|++.+.+.+|.+.+...
T Consensus 293 ------------~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 293 ------------GSWIIATPVIDENGTIYFGTRNGKFYALFN 322 (330)
T ss_dssp ------------SSCCCSCCEECTTCCEEEECTTSCEEEEEC
T ss_pred ------------CCccccceEEcCCCEEEEEcCCCeEEEEec
Confidence 011234566778888777666787776643
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=1.1e-08 Score=117.99 Aligned_cols=256 Identities=11% Similarity=0.063 Sum_probs=169.5
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeec-C-CCEEEEEEeC---CCCEEEEEe------CCCeEEEEECCCCcEEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVT-E-LPVRSAKFVA---RKQWVVAGA------DDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~-~~v~~~~~~~---~~~~l~~~~------~dg~i~iw~~~~~~~~~~~ 95 (871)
+..|++++.+|.|..+|..+|+.+-.+... . .....+..+| ++ .+++++ .+|.|..||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 457888888999999999999988776642 1 1101111112 44 455553 3689999999999998777
Q ss_pred ccCC-------------------------------CCeEEEEEcCCCCEEEEEECCCe-------------------EEE
Q 002881 96 EAHT-------------------------------DYIRCVAVHPTLPYVLSSSDDML-------------------IKL 125 (871)
Q Consensus 96 ~~~~-------------------------------~~i~~i~~~~~~~~l~~~~~dg~-------------------i~i 125 (871)
.... .....++++|++..+++++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 01125788898889999988764 999
Q ss_pred EECCCCceEEEEeec--CC-------cceEEEEEecCCCC---EEEEEECCCcEEEEECCCCCCeEEEecCCC-------
Q 002881 126 WDWEKGWMCTQIFEG--HS-------HYVMQVTFNPKDTN---TFASASLDRTIKIWNLGSPDPNFTLDAHQK------- 186 (871)
Q Consensus 126 wd~~~~~~~~~~~~~--~~-------~~v~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------- 186 (871)
+|.+++... -.+.. |. ..+....... ++. .++.++.+|.++++|..+++.+........
T Consensus 280 lD~~TG~~~-W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 280 VNADTGEYV-WHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EETTTCCEE-EEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEccCCcee-EeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 999998443 33322 21 1222222222 333 788899999999999999987643321110
Q ss_pred --------------------------------CeeEEEEeecCCcCEEEEEeC---------------------------
Q 002881 187 --------------------------------GVNCVDYFTGGDKPYLITGSD--------------------------- 207 (871)
Q Consensus 187 --------------------------------~i~~i~~~~~~~~~~l~~~~~--------------------------- 207 (871)
.-..++++|... ++++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~--~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG--LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT--EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC--EEEEeccccceeeeeccccccccccccccccCcc
Confidence 001256666554 4554321
Q ss_pred ------------------CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEec
Q 002881 208 ------------------DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (871)
Q Consensus 208 ------------------dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (871)
+|.|..||+.+++.+..+..+. ++..-.+...+.++++++.||.|+.||..+|+.+..+..
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 3789999999999988876443 333335566778999999999999999999999998876
Q ss_pred CCccE-EEEEEeeCCCeEEE
Q 002881 270 GLERV-WAIGYMKSSRRIVI 288 (871)
Q Consensus 270 ~~~~i-~~i~~~~~~~~l~~ 288 (871)
+.+.+ .-+.|..+|+..++
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEE
T ss_pred CCCcccCceEEEECCEEEEE
Confidence 64322 34667778765443
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.11 E-value=1.3e-09 Score=114.63 Aligned_cols=261 Identities=12% Similarity=0.005 Sum_probs=175.0
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
..+.++...+++. |.+++.+ |..+|. +++....+............. +..+.+++.++.|..+|.. ++.....
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 3456777777775 5555434 888885 555443333222222223333 5668888889999999988 7777766
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002881 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (871)
Q Consensus 96 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (871)
..+...+.++...+++. +.+++.++.|..+|.. + .....+......+.++...+ ++. +.+++ +.|..+| .++
T Consensus 133 ~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~~~d~-~g~-l~v~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G-TEKWRFKTNDAITSAASIGK-DGT-IYFGS--DKVYAIN-PDG 204 (330)
T ss_dssp ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S-CEEEEEECSSCCCSCCEECT-TCC-EEEES--SSEEEEC-TTS
T ss_pred cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C-CEeEEEecCCCceeeeEEcC-CCE-EEEEe--CEEEEEC-CCC
Confidence 65666667777777775 6778888999999988 5 33333333445566677765 454 44555 8899999 666
Q ss_pred CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 176 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
+...........+.++...+++. +.+++.++.|..+|. ++..+..+......+.++...+++ .|.+++.+|.|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~---l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~ 279 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDGT---IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYA 279 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTSC---EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEE
T ss_pred cEEEEEccCCcceeceEECCCCe---EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEE
Confidence 66666665556677777766654 777888888999984 566666665444444556666666 5667788889999
Q ss_pred EeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 256 wd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+|. +++....+......+.++...+++. |.+|+.+|.+.+.
T Consensus 280 ~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 280 INP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred ECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 995 6777777766656667777766665 6778999988874
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.09 E-value=4.6e-08 Score=104.83 Aligned_cols=257 Identities=10% Similarity=0.028 Sum_probs=169.3
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCe---
Q 002881 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI--- 102 (871)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i--- 102 (871)
++..+++++.++.|..+|..+|+................. .+..+++++.++.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 3456888888999999999999988766644322111222 24578889999999999999999887776432211
Q ss_pred --EEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcc---------e-EEEEEecCCCCEEEEEECCCcEEEE
Q 002881 103 --RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY---------V-MQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 103 --~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
...... +..+++++.++.+..+|..++...-......... + ..... .+..+++++.++.+..+
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTAL 254 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEE
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEE
Confidence 122222 3578888889999999998884433322111000 0 01111 24677888889999999
Q ss_pred ECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCc-ccCeEEEEEcCCCCEEEEEEC
Q 002881 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 171 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~i~~~p~~~~l~~~~~ 249 (871)
|..+++....... .....+.. .+. .+++++.++.|..+|..+++........ ...+...... +..|++++.
T Consensus 255 d~~tG~~~w~~~~--~~~~~~~~--~~~--~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~ 326 (376)
T 3q7m_A 255 DLRSGQIMWKREL--GSVNDFIV--DGN--RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDS 326 (376)
T ss_dssp ETTTCCEEEEECC--CCEEEEEE--ETT--EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECT
T ss_pred ECCCCcEEeeccC--CCCCCceE--ECC--EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeC
Confidence 9999887766542 23333333 233 5888888999999999999988776522 2222233332 457888999
Q ss_pred CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
+|.|.++|..+++.+.........+.+.... .+..|.+++.+|.+..+
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEE
Confidence 9999999999999888776643333322111 25578888888887653
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=1.5e-08 Score=116.58 Aligned_cols=257 Identities=12% Similarity=0.077 Sum_probs=175.0
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeec-C----CCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVT-E----LPVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 95 (871)
+..|++++.++.|..+|..+|+.+-.+..+ . ..+...-.. .+..+++++. +|.|+.+|..+|+.+..+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 567888888999999999999998887754 2 112111111 2445666553 699999999999998877
Q ss_pred ccCCCC--------------------------------eEEEEEcCCCCEEEEEECCC-------------------eEE
Q 002881 96 EAHTDY--------------------------------IRCVAVHPTLPYVLSSSDDM-------------------LIK 124 (871)
Q Consensus 96 ~~~~~~--------------------------------i~~i~~~~~~~~l~~~~~dg-------------------~i~ 124 (871)
...... ...++++|++..+++++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 542211 13578889888999887764 599
Q ss_pred EEECCCCceEEEEeec-CC-------cceEEEEEecCCC---CEEEEEECCCcEEEEECCCCCCeEEEecCCCC------
Q 002881 125 LWDWEKGWMCTQIFEG-HS-------HYVMQVTFNPKDT---NTFASASLDRTIKIWNLGSPDPNFTLDAHQKG------ 187 (871)
Q Consensus 125 iwd~~~~~~~~~~~~~-~~-------~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------ 187 (871)
.+|.+++...-..-.. |. .....+.... ++ ..++.++.+|.+.++|..+++.+........+
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 9999998443332221 21 1122233333 44 68899999999999999999887665422111
Q ss_pred -----e------------------------eEEEEeecCCcCEEEEEeC-------------------------------
Q 002881 188 -----V------------------------NCVDYFTGGDKPYLITGSD------------------------------- 207 (871)
Q Consensus 188 -----i------------------------~~i~~~~~~~~~~l~~~~~------------------------------- 207 (871)
+ ..++++|+.. ++++...
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~--~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG--LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT--EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC--EEEEeChhcceeeecccccccccccccccccccccccc
Confidence 0 1356676655 4555432
Q ss_pred ------------CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCc-cE
Q 002881 208 ------------DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE-RV 274 (871)
Q Consensus 208 ------------dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i 274 (871)
.|.|..||+.+++.+..+. +..++.+..+...+.++++++.||.+++||..+++.+..+....+ ..
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 2789999999999988876 334445555667778899999999999999999999998876542 22
Q ss_pred EEEEEeeCCCeEEE
Q 002881 275 WAIGYMKSSRRIVI 288 (871)
Q Consensus 275 ~~i~~~~~~~~l~~ 288 (871)
.-+.|.++|+..++
T Consensus 523 ~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 523 APSTYMVDGRQYVS 536 (677)
T ss_dssp CCEEEEETTEEEEE
T ss_pred CCEEEEeCCEEEEE
Confidence 34566678765543
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=9.3e-11 Score=124.95 Aligned_cols=190 Identities=12% Similarity=0.016 Sum_probs=112.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCc-ceE
Q 002881 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH-YVM 146 (871)
Q Consensus 68 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~ 146 (871)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..++... .....+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-TKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS-EECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-eeeeccCccccc
Confidence 578899999999999999999999988876 45555556667777888889999999999877332 22222211 110
Q ss_pred -EEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 147 -QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 147 -~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
+.... .+..+++++.++.|..||..+++....+..+. ...++|.+. .+++++.++.|+.||..+++.+..+
T Consensus 85 ~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~--~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 85 ASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS--LLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred cCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC--EEEEEecCCEEEEEECCCCCEEEeE
Confidence 00111 34567888889999999999998877665443 133455444 6888899999999999999876665
Q ss_pred cCcccCeEEEEEcCCC---CEEEEEECCCcEEEEeCCCCeEEEEEecC
Q 002881 226 EGHTHNVSAVCFHPEL---PIIITGSEDGTVRIWHATTYRLENTLNYG 270 (871)
Q Consensus 226 ~~~~~~v~~i~~~p~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (871)
.... .....+.++. ..+++++.||.|+.||..+|+.+......
T Consensus 157 ~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 157 TYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp EEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred eccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 4221 1223334432 46778889999999999999988877644
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=123.86 Aligned_cols=255 Identities=9% Similarity=0.014 Sum_probs=142.3
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-eE-
Q 002881 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY-IR- 103 (871)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~- 103 (871)
++..+++++.||.|+.||..+|+.+..+.. .++.+..+..++..+++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 467899999999999999999999888876 45666666678878888889999999999998877666433211 10
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec
Q 002881 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA 183 (871)
Q Consensus 104 ~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 183 (871)
+..+. .+..+++++.++.|..||.+++. ....+..+. ...++| ++..+++++.|+.|..||.++++....+..
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 00111 34578888899999999999883 333333332 234566 677888999999999999999887766542
Q ss_pred CCCCeeEEEEeecC-CcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeE-EEEEcCCCCEE----EEEECCCcEEEEe
Q 002881 184 HQKGVNCVDYFTGG-DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS-AVCFHPELPII----ITGSEDGTVRIWH 257 (871)
Q Consensus 184 ~~~~i~~i~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l----~~~~~dg~v~iwd 257 (871)
.. .....+.++. ....+++++.+|.|..||..+++.+..... ..++. ...+++++... +.+ ++.++.+|
T Consensus 159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld 233 (369)
T 2hz6_A 159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VETLRYLT 233 (369)
T ss_dssp EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHHHHHHH
T ss_pred cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--ccceeeee
Confidence 21 1112222211 002477889999999999999998887763 34443 34455565422 112 34566666
Q ss_pred CCCCe----EEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 258 ATTYR----LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 258 ~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
..+|+ ......... .+.+ ..-.+..|.+++.+|.++.
T Consensus 234 ~~tG~~~~~~~W~~~~~~-~~~s--p~~~~g~lyv~~~~G~l~a 274 (369)
T 2hz6_A 234 FMSGEVGRITKWKYPFPK-ETEA--KSKLTPTLYVGKYSTSLYA 274 (369)
T ss_dssp HHHHHHHHHHTSCCCCCC-HHHH--HHHSEEEECBEECSSCEEC
T ss_pred hhcCCcccceeeeeccCc-cccc--cccccceEEEecccCCEEe
Confidence 65555 333332221 1100 0012346677777777665
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=1.8e-08 Score=106.21 Aligned_cols=227 Identities=5% Similarity=-0.040 Sum_probs=151.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc-----CCeEEEEeCCCCceeEEeeec------CCCEEEEEEeCCCCEEEEE-e---C
Q 002881 13 QRSERVKSVDLHPSEPWILASLY-----SGTVCIWNYQSQTMAKSFEVT------ELPVRSAKFVARKQWVVAG-A---D 77 (871)
Q Consensus 13 ~h~~~v~~i~~s~~~~~la~~~~-----dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~-~---~ 77 (871)
+|-..+.+++++|+++++++-.. ++.|.+||..+++.++.+..+ ...+..+++++++..++++ . .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45678999999999875554433 578999999999877777643 2356899999876565544 3 5
Q ss_pred CCeEEEEECCCCcEEEEEccCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC
Q 002881 78 DMFIRVYNYNTMDKVKVFEAHTDYIR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (871)
Q Consensus 78 dg~i~iw~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 156 (871)
++.|.+||..+++..+.+..|..... ...+.++|..+.+.+.+|.+..|. ..+..++|+| +++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~-dg~ 207 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDA-ENE 207 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECT-TSC
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEecc-CCC
Confidence 78999999998887777665432111 134455666666677777765543 1256799999 777
Q ss_pred EEEEEECCC-cEEEEECC---CCCC-------eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEe
Q 002881 157 TFASASLDR-TIKIWNLG---SPDP-------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (871)
Q Consensus 157 ~l~~~~~dg-~i~i~d~~---~~~~-------~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 225 (871)
.|+++..++ .+..++.. .+.. .....++......+++++++. ++++...++.|.+||..+++.....
T Consensus 208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~--l~va~~~~~~V~~~d~~~G~~~~~~ 285 (343)
T 2qe8_A 208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN--IYVGDLAHSAIGVITSADRAYKLLV 285 (343)
T ss_dssp EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC--EEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC--EEEEccCCCeEEEEECCCCCEEEEE
Confidence 788777666 55555432 1110 011222334556788888765 7788888899999998556543333
Q ss_pred cC-cccCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 226 EG-HTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 226 ~~-~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
.. +...++++++.+++.++++.+..+.+.+|.
T Consensus 286 ~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 286 TDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 22 245689999999998888877655554443
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=2.7e-07 Score=96.78 Aligned_cols=248 Identities=11% Similarity=0.105 Sum_probs=162.3
Q ss_pred eEEEEeCCC-----CceeEEeeec--CCCEEEEEE-----------e--CCCCEEEEEe-CCCeEEEEECCCC----cEE
Q 002881 38 TVCIWNYQS-----QTMAKSFEVT--ELPVRSAKF-----------V--ARKQWVVAGA-DDMFIRVYNYNTM----DKV 92 (871)
Q Consensus 38 ~v~iwd~~~-----~~~~~~~~~~--~~~v~~~~~-----------~--~~~~~l~~~~-~dg~i~iw~~~~~----~~~ 92 (871)
.+.+.|++. ++.+..+... ......+.| + +++++|++.+ .++.|.|+|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 366666665 5666655432 123334445 6 7888877655 4789999999765 566
Q ss_pred EEEc------c-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCceEEEEee-c-CC-cceEEEEEecCCCC
Q 002881 93 KVFE------A-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQIFE-G-HS-HYVMQVTFNPKDTN 156 (871)
Q Consensus 93 ~~~~------~-~~~~i~~i~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~-~~-~~v~~~~~~p~~~~ 156 (871)
+++. . .......+..+|+| .++++..+ |.|.+.|.++. .+..... + .. ..-..+.|+| +.+
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~-~v~~~~~~~~~~~~~~Yd~~~~p-~~~ 200 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF-EPLGKWEIDRGDQYLAYDFWWNL-PNE 200 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC-CEEEECCSBCTTCCCCCCEEEET-TTT
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC-eEEEEEccCCCCccccceEEECC-CCC
Confidence 6663 1 11245667889999 66666555 78999999988 4444443 2 11 2234688899 778
Q ss_pred EEEEEE-------------------CCCcEEEEECCCCCCeEEEecC-C-CCeeEEEE--eecCCcCEEEEEe------C
Q 002881 157 TFASAS-------------------LDRTIKIWNLGSPDPNFTLDAH-Q-KGVNCVDY--FTGGDKPYLITGS------D 207 (871)
Q Consensus 157 ~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~-~-~~i~~i~~--~~~~~~~~l~~~~------~ 207 (871)
.+++.. .+.+|.+||+.+++...++... . .....+.| +|+++ ++.+++ .
T Consensus 201 ~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~--~aYV~~e~~~~~L 278 (462)
T 2ece_A 201 VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKL--MGFINMVVSLKDL 278 (462)
T ss_dssp EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCC--EEEEEEEEETTTC
T ss_pred EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCC--EEEEEEeeeccCC
Confidence 888874 3689999999987766666643 1 23445656 77776 454444 5
Q ss_pred CCeEEEEECCCCce--EEEe--cCc----------------ccCeEEEEEcCCCCEEEEEEC-CCcEEEEeCC---CCeE
Q 002881 208 DHTAKVWDYQTKSC--VQTL--EGH----------------THNVSAVCFHPELPIIITGSE-DGTVRIWHAT---TYRL 263 (871)
Q Consensus 208 dg~i~v~d~~~~~~--~~~~--~~~----------------~~~v~~i~~~p~~~~l~~~~~-dg~v~iwd~~---~~~~ 263 (871)
++.|.+|....+.. .+.+ ... ......|.++|||++|.++.. .+.|.+||+. +.++
T Consensus 279 ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~l 358 (462)
T 2ece_A 279 SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVL 358 (462)
T ss_dssp CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 67888877654421 1111 110 134678999999998887764 6789999985 3355
Q ss_pred EEEEecCC--------------ccEEEEEEeeCCCeEEEEE
Q 002881 264 ENTLNYGL--------------ERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 264 ~~~~~~~~--------------~~i~~i~~~~~~~~l~~g~ 290 (871)
+..+.... +....++++|||++|.++.
T Consensus 359 v~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 359 TGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 65555431 1357899999999999887
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.96 E-value=1.1e-06 Score=88.80 Aligned_cols=221 Identities=8% Similarity=-0.020 Sum_probs=145.3
Q ss_pred CCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEE
Q 002881 16 ERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~ 93 (871)
..+.+++|+|++..|+.+.. ++.|.+++..++.....+...-.....++++|++..|+.+. ..+.|.+++.+......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 35679999998777776654 68999999876554333332235689999999877666655 46799999987543322
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (871)
...........++++|++..|+.+.. .+.|..++++.. .........-.....++++|+++.++++-...+.|.++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 23322356789999997777766654 368888888754 22222222334578899999444455555567899999
Q ss_pred ECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc-cCeEEEEEcCCC
Q 002881 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHPEL 241 (871)
Q Consensus 171 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~i~~~p~~ 241 (871)
|+.+......... ......++. ++.. ++++...++.|..+|..+++.+..+.... .....+++.|++
T Consensus 195 ~~~g~~~~~~~~~-~~~P~gi~~--d~~~-lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 195 NPAQPGRRKVLEG-LQYPFAVTS--YGKN-LYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ETTEEEEEEEEEC-CCSEEEEEE--ETTE-EEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred ecCCCceEEEecC-CCCceEEEE--eCCE-EEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 9975433333332 233345554 3432 45555567899999999898888876433 246778888775
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.88 E-value=8.6e-07 Score=92.95 Aligned_cols=219 Identities=10% Similarity=0.045 Sum_probs=146.0
Q ss_pred CCCCEEEEEE-cCCeEEEEeCCCC----ceeEEeee-------cCCCEEEEEEeCCCCEEEEEeCC------CeEEEEEC
Q 002881 25 PSEPWILASL-YSGTVCIWNYQSQ----TMAKSFEV-------TELPVRSAKFVARKQWVVAGADD------MFIRVYNY 86 (871)
Q Consensus 25 ~~~~~la~~~-~dg~v~iwd~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~ 86 (871)
+++++|++.+ .++.|.|+|+.+. +..++++. .......+..+|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 8888887755 4789999998765 66676631 11245677888999 66665444 78999999
Q ss_pred CCCcEEEEEccCCC---CeEEEEEcCCCCEEEEEE-------------------CCCeEEEEECCCCceEEEEeecC--C
Q 002881 87 NTMDKVKVFEAHTD---YIRCVAVHPTLPYVLSSS-------------------DDMLIKLWDWEKGWMCTQIFEGH--S 142 (871)
Q Consensus 87 ~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~~--~ 142 (871)
.+++.+..+..... .-..+.|+|+++.++++. ....|.+||+.++ +....+... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEEecCCCC
Confidence 99999988863222 234588899999888874 3689999999987 444444432 1
Q ss_pred cceEEEEE--ecCCCCEEEEEE------CCCcEEEEECCCCCC--eEEE--ecC----------------CCCeeEEEEe
Q 002881 143 HYVMQVTF--NPKDTNTFASAS------LDRTIKIWNLGSPDP--NFTL--DAH----------------QKGVNCVDYF 194 (871)
Q Consensus 143 ~~v~~~~~--~p~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~~----------------~~~i~~i~~~ 194 (871)
.....+.| +| +++++++++ .+++|.+|....++. ...+ ... ......+.++
T Consensus 251 ~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23445555 99 666666655 567887766544321 1111 110 2346788999
Q ss_pred ecCCcCEEEEE-eCCCeEEEEECCC---CceEEEecCcc--------------cCeEEEEEcCCCCEEEEEE
Q 002881 195 TGGDKPYLITG-SDDHTAKVWDYQT---KSCVQTLEGHT--------------HNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 195 ~~~~~~~l~~~-~~dg~i~v~d~~~---~~~~~~~~~~~--------------~~v~~i~~~p~~~~l~~~~ 248 (871)
++++ +|.++ -..+.|.+||+.. .+.+..+.... .....+.++|+|++|+++.
T Consensus 330 ~DGr--fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDK--FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSC--EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCC--EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9987 45544 4478999999863 24444443220 1257899999999998886
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.84 E-value=1.9e-07 Score=101.56 Aligned_cols=256 Identities=12% Similarity=0.040 Sum_probs=175.2
Q ss_pred EEEEEcCCeEEEEeCCCCceeEEeeecC---------------------------------------CCEEEEEEeC---
Q 002881 30 ILASLYSGTVCIWNYQSQTMAKSFEVTE---------------------------------------LPVRSAKFVA--- 67 (871)
Q Consensus 30 la~~~~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~--- 67 (871)
+.+|+.+|.|+|+-+.+++.++.+.... +.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5567889999999988887766653210 1112244454
Q ss_pred --CCCEEEEEeC-CCeEEEEECCCCcEEEEEccC-CCCeEEEEE-c-CCCCEEEEEE------------------CCCeE
Q 002881 68 --RKQWVVAGAD-DMFIRVYNYNTMDKVKVFEAH-TDYIRCVAV-H-PTLPYVLSSS------------------DDMLI 123 (871)
Q Consensus 68 --~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~-~~~i~~i~~-~-~~~~~l~~~~------------------~dg~i 123 (871)
||+++++... ++.|.+.|+.+.+....+.-. ...+..+++ + |++.++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 8888888765 568999999999988865432 345888888 5 8999999885 24689
Q ss_pred EEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC--------------------------------------
Q 002881 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-------------------------------------- 165 (871)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-------------------------------------- 165 (871)
.+.|.++.....++..+. ....++.+| +++++++.+.+.
T Consensus 178 tvID~~t~~v~~qI~Vgg--~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG--NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESS--CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCC--CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 999999874444444332 245677888 677777777543
Q ss_pred cEEEEECCC--CCC-eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCc------------eEEEecCccc
Q 002881 166 TIKIWNLGS--PDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS------------CVQTLEGHTH 230 (871)
Q Consensus 166 ~i~i~d~~~--~~~-~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~~~~~ 230 (871)
.|.+.|..+ ++. ...+.. .....++.++|+|+. +++++..+..|.++|+.+.+ ....+. -..
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~-v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~ 331 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKH-LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGL 331 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSE-EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCS
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCE-EEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCC
Confidence 477777776 444 344432 234578999999984 45555678899999998642 233333 334
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeEEEEEecCCccE-----EEEEEeeCCCeEEEEEc
Q 002881 231 NVSAVCFHPELPIIITGSEDGTVRIWHATT----------YRLENTLNYGLERV-----WAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 231 ~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~g~~ 291 (871)
....++|+|+|...++..-|++|.+||+.+ .+.+..+..+..+- ..+..+|||++|+++..
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 578899999995455666889999999876 55677777664321 11245789999887653
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.81 E-value=1e-06 Score=86.83 Aligned_cols=204 Identities=7% Similarity=-0.025 Sum_probs=142.9
Q ss_pred hhhhcccCCC--CEEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCceeEEeeecCC-CEEEEEEeCCCCEEEEEe-CCC
Q 002881 7 IKRKLAQRSE--RVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTEL-PVRSAKFVARKQWVVAGA-DDM 79 (871)
Q Consensus 7 ~~~~~~~h~~--~v~~i~~s~~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~dg 79 (871)
+..++ .|.. ....++|+|++ .|..++. ++.|.++|..+++.+..+..... ....+++. ++.|+.++ .++
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred EEEEE-ECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 34444 3554 36899999987 4555432 57999999999999988764332 22344554 55666655 478
Q ss_pred eEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC-Cc---ceEEEEEecCCC
Q 002881 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SH---YVMQVTFNPKDT 155 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~---~v~~~~~~p~~~ 155 (871)
.+.++|..+++.+..+...... ...++++++.++++..++.|.++|..+......+..+. .. .+..+.|. ++
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg 162 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NG 162 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TT
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CC
Confidence 9999999999999888633111 23456678888887788999999999874444443221 11 35677887 45
Q ss_pred CEEEEEECCCcEEEEECCCCCCeEEEecC-------------CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC
Q 002881 156 NTFASASLDRTIKIWNLGSPDPNFTLDAH-------------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 219 (871)
..++....++.|.+.|..+++....+... ....+.++|+|+++. +++++...+.+.+.++...
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~-lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR-IFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE-EEEEETTCSEEEEEEEEEC
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE-EEEECCCCCeEEEEEEecc
Confidence 55555556789999999999988777532 134589999998875 7778888899999887643
No 246
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.80 E-value=7.7e-06 Score=85.85 Aligned_cols=249 Identities=11% Similarity=0.023 Sum_probs=157.8
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~ 93 (871)
.+..+|.+..+ .++|+.+. .+.|+..++.......... ....+..++|++.+..|+... ..+.|..++.+......
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCccccccc-CceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 34455666666 45666654 4568888877655444433 334578999998777777665 57889999988765444
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-CcEEEEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RTIKIWN 171 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d 171 (871)
.+.........+++.+.+..|+.+ ...+.|.+.+++.. .........-.....++++|.++.++++-... +.|..++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 444334456789999866555544 45678999998865 33333333345578999999555555555555 7899999
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCC
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg 251 (871)
+............-...+.++++|.+.. +.++-...+.|..+++........+........++++. ++.++++-...+
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~-lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~ 266 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRR-MYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTK 266 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCE-EEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCC
Confidence 8754333222223345688999987653 45555567889999987543333333334456677773 444555555667
Q ss_pred cEEEEeCCCCeEEEEEec
Q 002881 252 TVRIWHATTYRLENTLNY 269 (871)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~ 269 (871)
.|..++..+|+....+..
T Consensus 267 ~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 267 SINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EEEEEETTTCCSCEEEEC
T ss_pred eEEEEEccCCCccEEecc
Confidence 787777666665554443
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=1.9e-06 Score=99.04 Aligned_cols=266 Identities=11% Similarity=0.100 Sum_probs=175.2
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCC----------E-EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELP----------V-RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 95 (871)
+..|++++.++.|.-+|..+|+.+-.+...... + ..+.. .+..+++++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456778888999999999999988777543210 0 11222 3567889999999999999999998887
Q ss_pred ccCC----CCeEE-EEEcCCCCEEEEEEC------CCeEEEEECCCCceEEEEeec--CC--------------------
Q 002881 96 EAHT----DYIRC-VAVHPTLPYVLSSSD------DMLIKLWDWEKGWMCTQIFEG--HS-------------------- 142 (871)
Q Consensus 96 ~~~~----~~i~~-i~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~--~~-------------------- 142 (871)
.... ..+.+ ..+. +..+++++. +|.|..+|.+++...-..... ..
T Consensus 144 ~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 6421 11111 1111 335665543 589999999998444333211 00
Q ss_pred --------cceEEEEEecCCCCEEEEEECCC-------------------cEEEEECCCCCCeEEEecCC---------C
Q 002881 143 --------HYVMQVTFNPKDTNTFASASLDR-------------------TIKIWNLGSPDPNFTLDAHQ---------K 186 (871)
Q Consensus 143 --------~~v~~~~~~p~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~---------~ 186 (871)
.....++++| ..+.++.++.++ .|..+|..+++....++... .
T Consensus 222 ~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp HHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 0112467888 667888887766 39999999999887776421 2
Q ss_pred CeeEEEEeecCC-cCEEEEEeCCCeEEEEECCCCceEEEecCccc------------Ce---------------------
Q 002881 187 GVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------------NV--------------------- 232 (871)
Q Consensus 187 ~i~~i~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------------~v--------------------- 232 (871)
+.....+..+++ ..+++.++.+|.++++|..+|+.+...+.... ++
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~ 380 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence 333333333443 12688899999999999999998754332110 00
Q ss_pred ---EEEEEcCCCCEEEEEE------------------------------------CCCcEEEEeCCCCeEEEEEecCCcc
Q 002881 233 ---SAVCFHPELPIIITGS------------------------------------EDGTVRIWHATTYRLENTLNYGLER 273 (871)
Q Consensus 233 ---~~i~~~p~~~~l~~~~------------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~ 273 (871)
..++++|+..++++.. .+|.|..||..+++........ ..
T Consensus 381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~ 459 (668)
T 1kv9_A 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-TH 459 (668)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SS
T ss_pred cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CC
Confidence 1257788766665421 2378999999999998887765 33
Q ss_pred EEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 274 VWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 274 i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.+...+...+..+++|+.+|.++.+
T Consensus 460 ~~~~~~~t~gg~vf~g~~dg~l~a~ 484 (668)
T 1kv9_A 460 WNGGTLSTAGNLVFQGTAAGQMHAY 484 (668)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEE
T ss_pred CcCceeEeCCCEEEEECCcccchhh
Confidence 4444556678889999999988875
No 248
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.78 E-value=6.5e-06 Score=87.79 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=162.1
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEEEcc
Q 002881 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 19 ~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 97 (871)
.|.+..+ ..+|+.+. .+.|+.+++..+....... ....+..++|++.+..|+... ..+.|..++.+.......+..
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 3445555 44565554 4678888887665544443 344578999998777776654 578999999887655444443
Q ss_pred CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-CcEEEEECCCC
Q 002881 98 HTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RTIKIWNLGSP 175 (871)
Q Consensus 98 ~~~~i~~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~ 175 (871)
.......+++.+.+..|+.+ ...+.|.+.+++.. .........-.....++++|.++.++++-... +.|..+++...
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~-~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC-ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 34456778999866555554 45678888888765 33333333345678999999555555554445 78999998765
Q ss_pred CCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 176 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
.........-...+.++++|++.. ++++-+..+.|..+++........+........++++. .+.++++-...+.|..
T Consensus 236 ~~~~~~~~~~~~PnGlavd~~~~~-lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 236 GRRIIADTHLFWPNGLTIDYAGRR-MYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINS 313 (386)
T ss_dssp SCEEEECSSCSCEEEEEEEGGGTE-EEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcEEEEECCCCCeeeEEEeCCCCE-EEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEE
Confidence 444433334455789999987653 45555567889999987543333333334456777773 4455566666778888
Q ss_pred EeCCCCeEEEEEecCCccEEEEEE
Q 002881 256 WHATTYRLENTLNYGLERVWAIGY 279 (871)
Q Consensus 256 wd~~~~~~~~~~~~~~~~i~~i~~ 279 (871)
++..+++....+.........+++
T Consensus 314 ~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 314 ANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTCCSCEEEECSCSCCCCEEE
T ss_pred EECCCCcceEEEccCCCCCceEEE
Confidence 886677665555544333344433
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.78 E-value=8.3e-06 Score=91.65 Aligned_cols=266 Identities=13% Similarity=0.081 Sum_probs=167.5
Q ss_pred CCEEEEEEc-CCeEEEEeC-CCCceeEEeeecCC-C----------EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 002881 27 EPWILASLY-SGTVCIWNY-QSQTMAKSFEVTEL-P----------VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 27 ~~~la~~~~-dg~v~iwd~-~~~~~~~~~~~~~~-~----------v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 93 (871)
+..+++++. ++.|.-+|. .+|+.+-.+..... . ...++. .+..+++++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445777777 889999999 89998877653321 0 011222 35678889999999999999999987
Q ss_pred EEccCC----CCeE-EEEEcCCCCEEEEEEC------CCeEEEEECCCCceEEEEeecCCc-------------------
Q 002881 94 VFEAHT----DYIR-CVAVHPTLPYVLSSSD------DMLIKLWDWEKGWMCTQIFEGHSH------------------- 143 (871)
Q Consensus 94 ~~~~~~----~~i~-~i~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------- 143 (871)
...... ..+. ..... +..+++++. +|.|..+|.+++...-+.......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 765321 0111 11111 345666665 789999999998444332221110
Q ss_pred ------------------ceEEEEEecCCCCEEEEEECC----------------CcEEEEECCCCCCeEEEecCCC---
Q 002881 144 ------------------YVMQVTFNPKDTNTFASASLD----------------RTIKIWNLGSPDPNFTLDAHQK--- 186 (871)
Q Consensus 144 ------------------~v~~~~~~p~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~--- 186 (871)
....+++.+ ....++.++.+ +.|..+|..+++....++....
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred ccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 001355666 45566666532 3599999999998877753211
Q ss_pred ------CeeEEEEeecCCc-CEEEEEeCCCeEEEEECCCCceEEEecCcc-------------cCe--------------
Q 002881 187 ------GVNCVDYFTGGDK-PYLITGSDDHTAKVWDYQTKSCVQTLEGHT-------------HNV-------------- 232 (871)
Q Consensus 187 ------~i~~i~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------~~v-------------- 232 (871)
....+...++++. .+++.++.+|.+.++|..+++.+....... .++
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 1111222234421 257788889999999999999877654221 111
Q ss_pred ------------EEEEEcCCCCEEEEEE-------------------------------------CCCcEEEEeCCCCeE
Q 002881 233 ------------SAVCFHPELPIIITGS-------------------------------------EDGTVRIWHATTYRL 263 (871)
Q Consensus 233 ------------~~i~~~p~~~~l~~~~-------------------------------------~dg~v~iwd~~~~~~ 263 (871)
..++++|+..++++.+ .+|.|..||..+++.
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 2357888877776654 347899999999998
Q ss_pred EEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 264 ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 264 ~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
...+.... .+.+......+..+.+++.+|.++.+
T Consensus 457 ~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~ 490 (571)
T 2ad6_A 457 KWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKAL 490 (571)
T ss_dssp EEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred EEEecCCC-CccceeEEECCCEEEEEcCCCeEEEE
Confidence 88776542 23333334456677778888887764
No 250
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.76 E-value=0.00065 Score=76.80 Aligned_cols=239 Identities=8% Similarity=-0.016 Sum_probs=141.8
Q ss_pred CCEEEEEEcCCeEEEEeCCCCce-eEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcE-EEEEccCCCCeE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDK-VKVFEAHTDYIR 103 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~~~~~i~ 103 (871)
.++|+-+ ....|+..++..... .......-..+..++|++.+..|+.+.. .+.|..++++.... ...+........
T Consensus 9 ~~~~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~ 87 (619)
T 3s94_A 9 APLLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 87 (619)
T ss_dssp -CCEEEE-CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE
T ss_pred CceEEEe-ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC
Confidence 3445544 367899999876431 2222223445789999998887777655 67899999876532 233443335788
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEEEECCCCCCeEEE
Q 002881 104 CVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSPDPNFTL 181 (871)
Q Consensus 104 ~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 181 (871)
.+++.+.+..|+.+. ..+.|.+.++++. .........-.....++++|.++.++++-. ..+.|...++.........
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence 999999666666554 5689999999875 333333334445678999994444444432 2467888888665444444
Q ss_pred ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 002881 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261 (871)
Q Consensus 182 ~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~ 261 (871)
...-...+.+++.+.+.. ++++-...+.|..+|+..........+......++++.++ .++++-...+.|...|..++
T Consensus 167 ~~~~~~P~Glald~~~~~-LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQK-LYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp CSSCSSEEEEEEETTTTE-EEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred eCCCCCCcEEEEEccCCE-EEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 344456788999887653 4455556678999998744332222212223346777665 45555556778999998777
Q ss_pred eEEEEEec
Q 002881 262 RLENTLNY 269 (871)
Q Consensus 262 ~~~~~~~~ 269 (871)
+....+..
T Consensus 245 ~~~~~i~~ 252 (619)
T 3s94_A 245 EGLREIHS 252 (619)
T ss_dssp CCCEECCS
T ss_pred cccEEEec
Confidence 65544443
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.74 E-value=2.5e-06 Score=98.09 Aligned_cols=253 Identities=11% Similarity=0.087 Sum_probs=161.7
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecC----CCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEc
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTE----LPVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~ 96 (871)
+..+++++.+|.|..+|..+|+.+-.+.... ..+.+.-.. .+..+++++. +|.|..+|..+|+.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 4568888889999999999999887776421 111110001 1345665543 5899999999999988875
Q ss_pred cCC---C----------------------------CeEEEEEcCCCCEEEEEECCC-------------------eEEEE
Q 002881 97 AHT---D----------------------------YIRCVAVHPTLPYVLSSSDDM-------------------LIKLW 126 (871)
Q Consensus 97 ~~~---~----------------------------~i~~i~~~~~~~~l~~~~~dg-------------------~i~iw 126 (871)
... . ....+++.|+...+++++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 210 0 112468888888888888776 39999
Q ss_pred ECCCCceEEEEeec-CC-------cceEEEEEecCCCC---EEEEEECCCcEEEEECCCCCCeEEEecCC----------
Q 002881 127 DWEKGWMCTQIFEG-HS-------HYVMQVTFNPKDTN---TFASASLDRTIKIWNLGSPDPNFTLDAHQ---------- 185 (871)
Q Consensus 127 d~~~~~~~~~~~~~-~~-------~~v~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------- 185 (871)
|.+++...-+.-.. |. .+........ +++ .++.++.+|.+.++|..+++.+.......
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 99998443332222 22 2222223333 333 68889999999999999998764432211
Q ss_pred --CCe------------------------eEEEEeecCCcCEEEEE----------------------------------
Q 002881 186 --KGV------------------------NCVDYFTGGDKPYLITG---------------------------------- 205 (871)
Q Consensus 186 --~~i------------------------~~i~~~~~~~~~~l~~~---------------------------------- 205 (871)
.++ ..++++|... ++.+.
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g--~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG--LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT--EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCC--EEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 000 1145555543 23321
Q ss_pred --eCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccE-EEEEEeeC
Q 002881 206 --SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERV-WAIGYMKS 282 (871)
Q Consensus 206 --~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i-~~i~~~~~ 282 (871)
..+|.|..||+.+++.+...... .+.....+...+.++++++.||.|+.||..+++.+..+....+.. .-+.+..+
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 12378999999999988777643 233333444567789999999999999999999998887653211 22344455
Q ss_pred CC
Q 002881 283 SR 284 (871)
Q Consensus 283 ~~ 284 (871)
|+
T Consensus 512 G~ 513 (668)
T 1kv9_A 512 GR 513 (668)
T ss_dssp TE
T ss_pred CE
Confidence 55
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.73 E-value=1.5e-05 Score=89.45 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=166.3
Q ss_pred CCEEEEEEc-CCeEEEEeC-CCCceeEEeeecCC-----------CEEEEEEeCCCCE----EEEEeCCCeEEEEECCCC
Q 002881 27 EPWILASLY-SGTVCIWNY-QSQTMAKSFEVTEL-----------PVRSAKFVARKQW----VVAGADDMFIRVYNYNTM 89 (871)
Q Consensus 27 ~~~la~~~~-dg~v~iwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~ 89 (871)
+..|++++. ++.|.-+|. .+|+.+-.+..... ....++++|.+.. +++++.|+.|.-+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445777777 889999999 89998877654321 0123455554444 888999999999999999
Q ss_pred cEEEEEccCCC----CeE-EEEEcCCCCEEEEEE------CCCeEEEEECCCCceEEEEeecCCc---------------
Q 002881 90 DKVKVFEAHTD----YIR-CVAVHPTLPYVLSSS------DDMLIKLWDWEKGWMCTQIFEGHSH--------------- 143 (871)
Q Consensus 90 ~~~~~~~~~~~----~i~-~i~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~--------------- 143 (871)
+.+........ .+. ...+. ++ .+++++ .+|.|.-+|.+++...-+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 99877653220 111 11111 33 566655 3799999999998444333221110
Q ss_pred ---------------------ce-EEEEEecCCCCEEEEEECC----------------CcEEEEECCCCCCeEEEecCC
Q 002881 144 ---------------------YV-MQVTFNPKDTNTFASASLD----------------RTIKIWNLGSPDPNFTLDAHQ 185 (871)
Q Consensus 144 ---------------------~v-~~~~~~p~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~ 185 (871)
.+ ..+++.+ ..+.++.++.+ +.|..+|..+++....++...
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred ccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 00 1345666 56677777665 379999999999887776432
Q ss_pred CC---------eeEEEEe-ecCCc-CEEEEEeCCCeEEEEECCCCceEEEecCcc-------------cCe---------
Q 002881 186 KG---------VNCVDYF-TGGDK-PYLITGSDDHTAKVWDYQTKSCVQTLEGHT-------------HNV--------- 232 (871)
Q Consensus 186 ~~---------i~~i~~~-~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------~~v--------- 232 (871)
.. ...+... .+++. .+++.++.+|.+.++|..+|+.+....... .++
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 21 1112221 23421 367778899999999999999877654211 011
Q ss_pred -----------------EEEEEcCCCCEEEEEE---------------------------------------CCCcEEEE
Q 002881 233 -----------------SAVCFHPELPIIITGS---------------------------------------EDGTVRIW 256 (871)
Q Consensus 233 -----------------~~i~~~p~~~~l~~~~---------------------------------------~dg~v~iw 256 (871)
..++++|+..++++.. .+|.|..|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 2356777666555432 34678889
Q ss_pred eCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 257 HATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 257 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
|+.+++.+....... +.++-.....+..+.+++.||.++.+
T Consensus 459 D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~ 499 (599)
T 1w6s_A 459 NAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKAR 499 (599)
T ss_dssp CTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred ECCCCCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEE
Confidence 998988887765432 22222233456677778888877653
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=3.6e-07 Score=99.37 Aligned_cols=223 Identities=10% Similarity=0.059 Sum_probs=157.9
Q ss_pred EEEcC-----CCCEEEEEEc-CCeEEEEeCCCCceeEEeeec-CCCEEEEEE-e-CCCCEEEEEe---------------
Q 002881 21 VDLHP-----SEPWILASLY-SGTVCIWNYQSQTMAKSFEVT-ELPVRSAKF-V-ARKQWVVAGA--------------- 76 (871)
Q Consensus 21 i~~s~-----~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~--------------- 76 (871)
...|. ||+++.+... ++.|.+.|+.+.+..+.++.. ...+..+++ + |++.++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 55555 8888888766 567999999999988866543 345888888 5 9999999885
Q ss_pred ---CCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC--------------------------------
Q 002881 77 ---DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-------------------------------- 121 (871)
Q Consensus 77 ---~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-------------------------------- 121 (871)
.++.+.++|..+.+...++.-.. ....++++|+|+++++++.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 24689999999998888876322 356788999999999888553
Q ss_pred ------eEEEEECCC--CceEEEEeecCCcceEEEEEecCCCCEEEE-EECCCcEEEEECCCCC------------CeEE
Q 002881 122 ------LIKLWDWEK--GWMCTQIFEGHSHYVMQVTFNPKDTNTFAS-ASLDRTIKIWNLGSPD------------PNFT 180 (871)
Q Consensus 122 ------~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~i~d~~~~~------------~~~~ 180 (871)
.|.+.|..+ +......+.. .....++.++| +++++++ +..+.+|.++|+.+.+ ....
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 366667665 3221222211 12356789999 6665555 4568899999998542 1122
Q ss_pred EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC----------CceEEEecCcccCe-----EEEEEcCCCCEEE
Q 002881 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----------KSCVQTLEGHTHNV-----SAVCFHPELPIII 245 (871)
Q Consensus 181 ~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~v-----~~i~~~p~~~~l~ 245 (871)
. .-......++|+++| . ..++..-++.|.+||+.+ .+.+.++..|..+- .++..+|||++|+
T Consensus 327 v-~vG~gP~h~aF~~dG-~-aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~ 403 (595)
T 1fwx_A 327 P-ELGLGPLHTAFDGRG-N-AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV 403 (595)
T ss_dssp C-BCCSCEEEEEECTTS-E-EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred c-CCCCCcceEEECCCC-e-EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence 2 233557889999988 3 677888899999999976 55677777664432 1234589999999
Q ss_pred EEEC
Q 002881 246 TGSE 249 (871)
Q Consensus 246 ~~~~ 249 (871)
+...
T Consensus 404 ~~Nk 407 (595)
T 1fwx_A 404 CLSK 407 (595)
T ss_dssp EEES
T ss_pred EcCC
Confidence 8763
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.72 E-value=3.6e-06 Score=82.98 Aligned_cols=192 Identities=9% Similarity=0.035 Sum_probs=132.1
Q ss_pred cEEEEEccCCC--CeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002881 90 DKVKVFEAHTD--YIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 90 ~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
+.+.++. |.. ....+.|++++ .|+.++. ++.|.+.|+.++........+.......+++. ++...++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3445553 443 36899999986 5555543 57999999999854444332322233456665 34555566668
Q ss_pred CcEEEEECCCCCCeEEEecC-CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc-----cCeEEEEEc
Q 002881 165 RTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFH 238 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~i~~~ 238 (871)
+.+.++|..+.+.+.++... .. ...+++++.. ++++..++.|.++|..+.+.+..+.... ..+..+.|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKI--LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS---CCEEEECSSS--EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCC---eEEEEECCCE--EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 99999999998888777643 22 2335567664 4455568899999999988887776432 136678888
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEEecC-------------CccEEEEEEeeCCCeEEEEEc
Q 002881 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYG-------------LERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 239 p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~l~~g~~ 291 (871)
++...+....++.|.+.|..+++.+..+... ......++++|+++.+.+++.
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 6655555556789999999999988888653 135689999999887776653
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=8.1e-06 Score=79.25 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=130.3
Q ss_pred EEEEEccCCCC--eEEEEEcCCCCEEEEEECCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 91 KVKVFEAHTDY--IRCVAVHPTLPYVLSSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 91 ~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
.+.++ .|... ...+.|+ ++.+..+.+.+| .|+.+|+++++............-..++.. ++.+.++.-.++.
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCE
Confidence 44555 34433 4788998 565556666665 899999999955444433222222334544 3455555556899
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc-----cCeEEEEEcCCC
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFHPEL 241 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~i~~~p~~ 241 (871)
+.+||..+.+.+.++.....+ ..+ +++++ .++.+..++.|.++|..+.+.+.++.... ..+..+.|. +|
T Consensus 109 v~v~D~~t~~~~~ti~~~~eG-~gl--t~dg~--~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDGEG-WGL--THNDQ--YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp EEEEETTTCCEEEEEECSSCC-CCE--EECSS--CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEECccCcEEEEEECCCCc-eEE--ecCCC--EEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 999999999988888754322 233 35565 35555557899999999998887776432 334567776 66
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEecC------------CccEEEEEEeeCCCeEEEEEcC
Q 002881 242 PIIITGSEDGTVRIWHATTYRLENTLNYG------------LERVWAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~l~~g~~d 292 (871)
.+.+..-.++.|.+.|..+++.+..+... ......|+|+|+++.|.+.+..
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65555556789999999999988887653 1356889999998888877654
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.67 E-value=6.8e-05 Score=77.43 Aligned_cols=236 Identities=10% Similarity=-0.046 Sum_probs=147.2
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCC----CcEEEEEccCCCCe
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNT----MDKVKVFEAHTDYI 102 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~----~~~~~~~~~~~~~i 102 (871)
++|+.+. .+.|+..|+.+.+....+. ....+..++|++++..|+.+.. .+.|..++.++ ......+.......
T Consensus 2 ~~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 2 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp CEEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred CEEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 4566655 4568999988876655444 3456789999998777766654 68999999876 22222333333456
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-CcEEEEECCCCCCeEE
Q 002881 103 RCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RTIKIWNLGSPDPNFT 180 (871)
Q Consensus 103 ~~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~ 180 (871)
..+++.+.+..|+.+ ...+.|.+.+++.. ...............++++|.++.++++.... +.|..+++........
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~ 158 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 158 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE
Confidence 889998765556554 56789999998865 33333333345678999998445444444333 7898898865432222
Q ss_pred EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 181 ~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
....-...+.+++++++.. ++++-...+.|..+|+.......... .......++++.. +.++++-...+.|..++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~-lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGR-LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EECCCCCceEEEEeccCCE-EEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeC
Confidence 2333456788999987653 44555567899999987432221112 1223456777753 455556666778888887
Q ss_pred CCCeEEEEEe
Q 002881 259 TTYRLENTLN 268 (871)
Q Consensus 259 ~~~~~~~~~~ 268 (871)
.+++....+.
T Consensus 237 ~~g~~~~~i~ 246 (316)
T 1ijq_A 237 LTGSDVNLLA 246 (316)
T ss_dssp TTCCCCEEEE
T ss_pred CCCcceEEEe
Confidence 6776544443
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.65 E-value=1.9e-05 Score=81.34 Aligned_cols=236 Identities=10% Similarity=0.026 Sum_probs=144.0
Q ss_pred ceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC--CeEEE
Q 002881 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKL 125 (871)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~i 125 (871)
+.+..+... .....++|+++++.+++-..++.|..|+..+ +....+. ....+..+++.++++++++.... ..|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 334444322 4577899999998666666789999999775 3333333 23568899999999865554332 24777
Q ss_pred EECCCCceEEEEee-cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-eEEEe---------cCCCCeeEEEEe
Q 002881 126 WDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLD---------AHQKGVNCVDYF 194 (871)
Q Consensus 126 wd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~i~~i~~~ 194 (871)
+|..++. ...... ........++..+ ++..+++-..++.|.++|..+++. +.... ..-...+.+ +
T Consensus 100 ~d~~~g~-~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 100 LVKSDGT-VETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EECTTSC-EEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EcCCCCe-EEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 7777663 332222 1222234444444 444444444588999999765421 11111 011233455 7
Q ss_pred ecCCcCEEEEEeCCCeEEEEECCC-Cce--EEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE--EEec
Q 002881 195 TGGDKPYLITGSDDHTAKVWDYQT-KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN--TLNY 269 (871)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~ 269 (871)
+++.. ++++-...+.|..|++.. +.. ...+. .......++++++|.++++....+.|.+++.. ++... .+..
T Consensus 176 ~dg~~-lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNF-LYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EETTE-EEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred cCCCE-EEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 77653 455556678999999874 321 11111 11235668999999887777778899999965 65533 3344
Q ss_pred CCccEEEEEEe---eCCCeEEEEEcCC
Q 002881 270 GLERVWAIGYM---KSSRRIVIGYDEG 293 (871)
Q Consensus 270 ~~~~i~~i~~~---~~~~~l~~g~~dg 293 (871)
.....++++|. |+++.|.+++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 44678999998 8888888777654
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=2.4e-06 Score=83.01 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=128.7
Q ss_pred hhhhcccCCCC--EEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeE
Q 002881 7 IKRKLAQRSER--VKSVDLHPSEPWILASLYSG--TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFI 81 (871)
Q Consensus 7 ~~~~~~~h~~~--v~~i~~s~~~~~la~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 81 (871)
+.+++ .|... ...+.|+ ++.+..+++.+| .|+++|+.+++.+..+.... ........++++.|.... .++.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 34445 35444 3789998 666555555555 89999999999998887543 333333344566666665 48899
Q ss_pred EEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeec-CC---cceEEEEEecCCCCE
Q 002881 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HS---HYVMQVTFNPKDTNT 157 (871)
Q Consensus 82 ~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~p~~~~~ 157 (871)
.+||..+.+.+.++..... ...+++++..|+.+..++.|.++|..+......+... .. ..+..+.|. ++..
T Consensus 110 ~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~l 184 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEI 184 (262)
T ss_dssp EEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEE
T ss_pred EEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEE
Confidence 9999999999999875332 2233356777777777788999999987444443221 12 234457776 4666
Q ss_pred EEEEECCCcEEEEECCCCCCeEEEecC------------CCCeeEEEEeecCCcCEEEEE
Q 002881 158 FASASLDRTIKIWNLGSPDPNFTLDAH------------QKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~i~~i~~~~~~~~~~l~~~ 205 (871)
++..-.+..|.+.|..+++....+... ....+.|+|+|+++. ++++|
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~-lfVTG 243 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR-LFVTG 243 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE-EEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE-EEEEC
Confidence 655556889999999999887777532 134588999998774 44444
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=7.6e-05 Score=83.85 Aligned_cols=267 Identities=12% Similarity=0.033 Sum_probs=163.4
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCC---------EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELP---------VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 97 (871)
+..+++++.++.|.-+|..+|+.+-.+...... ...++. .+..+++++.++.|.-+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 345666666456999999999988777643221 011222 356788899999999999999999877653
Q ss_pred CCC----CeE-EEEEcC---CCC-EEEEEEC------CCeEEEEECCCCceEEEEeecCCcc------------------
Q 002881 98 HTD----YIR-CVAVHP---TLP-YVLSSSD------DMLIKLWDWEKGWMCTQIFEGHSHY------------------ 144 (871)
Q Consensus 98 ~~~----~i~-~i~~~~---~~~-~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~------------------ 144 (871)
... .+. ...... +++ .+++++. +|.|.-+|.+++...-. .......
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~-~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM-RPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE-EESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee-cCCCccccccccCcccccccccccc
Confidence 321 111 111111 233 5666553 78999999998844332 2111000
Q ss_pred -----------------------eEEEEEecCCCCEEEEEEC--------------------C----CcEEEEECCCCCC
Q 002881 145 -----------------------VMQVTFNPKDTNTFASASL--------------------D----RTIKIWNLGSPDP 177 (871)
Q Consensus 145 -----------------------v~~~~~~p~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~ 177 (871)
-..++++| ..+.+++++. | +.|..+|..+++.
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred cCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 01245666 4567776663 2 5899999999998
Q ss_pred eEEEecCCC---------CeeEEEEe-ecCCc-CEEEEEeCCCeEEEEECCCCceEEEecCccc-------------Ce-
Q 002881 178 NFTLDAHQK---------GVNCVDYF-TGGDK-PYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-------------NV- 232 (871)
Q Consensus 178 ~~~~~~~~~---------~i~~i~~~-~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-------------~v- 232 (871)
...++.... ...-+... .+++. .+++.++.+|.++++|..+|+.+........ ++
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 887753211 11111111 23421 3688899999999999999998776543210 00
Q ss_pred -------------------------------EEEEEcCCCCEEEEEE---------------------------------
Q 002881 233 -------------------------------SAVCFHPELPIIITGS--------------------------------- 248 (871)
Q Consensus 233 -------------------------------~~i~~~p~~~~l~~~~--------------------------------- 248 (871)
..++++|+..++++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 1345666655555432
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
.+|.|..||+.+++......... +++.-.....+..+++|+.||.++.+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~ 512 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAF 512 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEE
Confidence 25789999999999888776542 22222233356677788888887764
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.64 E-value=8.3e-06 Score=91.65 Aligned_cols=255 Identities=13% Similarity=0.063 Sum_probs=159.0
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCC----CEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEc
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~ 96 (871)
+..+++++.++.|..+|..+|+.+-....... .+.+--.. .+..+++++. ++.|..+|..+|+.+..+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 45688888899999999999998876653220 11110001 2345666655 7999999999999988775
Q ss_pred cCCCC--------------------------------------eEEEEEcCCCCEEEEEECC----------------Ce
Q 002881 97 AHTDY--------------------------------------IRCVAVHPTLPYVLSSSDD----------------ML 122 (871)
Q Consensus 97 ~~~~~--------------------------------------i~~i~~~~~~~~l~~~~~d----------------g~ 122 (871)
..... ...+++.+....++.++.+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 32110 0135667766677776642 35
Q ss_pred EEEEECCCCceEEEEee-cC--------CcceEEEEEecCCC---CEEEEEECCCcEEEEECCCCCCeEEEecCC-----
Q 002881 123 IKLWDWEKGWMCTQIFE-GH--------SHYVMQVTFNPKDT---NTFASASLDRTIKIWNLGSPDPNFTLDAHQ----- 185 (871)
Q Consensus 123 i~iwd~~~~~~~~~~~~-~~--------~~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 185 (871)
|..+|.+++...-+.-. .| ..++. +...+ ++ ..++.++.+|.+.++|..+++.+.......
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 99999998844333221 12 12222 22223 34 367788899999999999998776654321
Q ss_pred --------CCe--------------------------eEEEEeecCCcCEEEEEe-------------------------
Q 002881 186 --------KGV--------------------------NCVDYFTGGDKPYLITGS------------------------- 206 (871)
Q Consensus 186 --------~~i--------------------------~~i~~~~~~~~~~l~~~~------------------------- 206 (871)
.++ ..++++|+.. ++++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g--~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR--TLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT--EEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC--EEEEEchhccccccccccccccCCccccccc
Confidence 111 1245555544 344332
Q ss_pred ------------CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCcc-
Q 002881 207 ------------DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER- 273 (871)
Q Consensus 207 ------------~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~- 273 (871)
.+|.|..||..+++.+.+.... ..+.+......+..+++++.||.|+.+|..+++.+..+......
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 3578999999999988777532 22222223334567888999999999999999999988765321
Q ss_pred EEEEEEeeCCCeEE
Q 002881 274 VWAIGYMKSSRRIV 287 (871)
Q Consensus 274 i~~i~~~~~~~~l~ 287 (871)
-..+.+..+|+.++
T Consensus 509 ~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 509 GSPMTYSFKGKQYI 522 (571)
T ss_dssp SCCEEEEETTEEEE
T ss_pred eeeEEEEECCEEEE
Confidence 11233446665433
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=1.1e-05 Score=84.04 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=147.0
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeec--------------------CCCEEEEEEeCCCCEEEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT--------------------ELPVRSAKFVARKQWVVAG 75 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~l~~~ 75 (871)
....+++|++++.++.++..++.|..|+..++... .+... ...+..+++.+++..|+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34677899999987888888999999997765443 23210 1357899999844456666
Q ss_pred eCCCeEEEEECCCCcEEEEEcc-----CCCCeEEEEEcC-CCCEEEEEEC-----------------CCeEEEEECCCCc
Q 002881 76 ADDMFIRVYNYNTMDKVKVFEA-----HTDYIRCVAVHP-TLPYVLSSSD-----------------DMLIKLWDWEKGW 132 (871)
Q Consensus 76 ~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~i~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~~ 132 (871)
...+.|..++..++.. ..+.. .......+++.+ +|...++-.. +|.|..+|..++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~- 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK- 175 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT-
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC-
Confidence 5556688888765432 22211 123478899999 8876655432 367889998766
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEE-ECCCcEEEEECCCCC--CeEEEecCCCCeeEEEEeecCCcCEEEEEeC--
Q 002881 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASA-SLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-- 207 (871)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~-- 207 (871)
........ -.....++|+| +++.++++ +..+.|.+|++.... ....+....+ ...+++.+++. +.++...
T Consensus 176 ~~~~~~~~-~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~--l~va~~~~~ 250 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH--FWVSSSEEL 250 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC--EEEEEEEET
T ss_pred EEEEeccC-CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC--EEEEecCcc
Confidence 33222221 12346789999 66655554 556899999987532 1122221223 67788877775 4544433
Q ss_pred --------CCeEEEEECCCCceEEEecCcc----cCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 208 --------DHTAKVWDYQTKSCVQTLEGHT----HNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 208 --------dg~i~v~d~~~~~~~~~~~~~~----~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
.+.|..+|.. ++.+..+.... ..++++++ .++.++++...++.|..+++.
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 4678888864 77666665432 34666666 355555555567788888865
No 262
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.63 E-value=0.0017 Score=73.37 Aligned_cols=393 Identities=13% Similarity=0.078 Sum_probs=210.0
Q ss_pred CCCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCce-eEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcE
Q 002881 15 SERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDK 91 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~ 91 (871)
-..+..++|++.+..|..+.. ++.|..++.+.... ...+...-..+..+++.+.+..|+.+. ..+.|.+.+++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 446889999998877777665 67899998765532 223333335788999999766666554 578999999876543
Q ss_pred EEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEE
Q 002881 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (871)
Q Consensus 92 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 169 (871)
...+...-.....|++.|.+.+|+.+.. .+.|...+++.. .........-.....+++++.++.++++-...+.|..
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~ 197 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 197 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence 3333344556788999998777776653 467777787754 3333333334557899999844555555555678999
Q ss_pred EECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc--------------------
Q 002881 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-------------------- 229 (871)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------------- 229 (871)
+|+.+................+++..+ . ++++-...+.|...|..+++....+....
T Consensus 198 ~~~dG~~~~~~~~~~~~~P~gi~~~~~--~-ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~ 274 (619)
T 3s94_A 198 SNLDGTNRQAVVKGSLPHPFALTLFED--I-LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 274 (619)
T ss_dssp ESSSCCEEC---------CCCEEESSS--E-EEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCT
T ss_pred ecCCCCccEEEEeCCCCCceEEEEeCC--E-EEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCcccc
Confidence 998764332222212222345555432 2 45555566788888876664332221100
Q ss_pred -----cCeEEEE-----------EcCCC---------------CEEEEEECCCcEEEEeCCCCeEE-EEEe-cCCccEEE
Q 002881 230 -----HNVSAVC-----------FHPEL---------------PIIITGSEDGTVRIWHATTYRLE-NTLN-YGLERVWA 276 (871)
Q Consensus 230 -----~~v~~i~-----------~~p~~---------------~~l~~~~~dg~v~iwd~~~~~~~-~~~~-~~~~~i~~ 276 (871)
+....+| ..|.| .+|+.+. .+.|+..++.+.... ..+. .....+.+
T Consensus 275 C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ 353 (619)
T 3s94_A 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIA 353 (619)
T ss_dssp TTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEE
T ss_pred ccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccceEEEecCCCccceeEEeccccCccEE
Confidence 0011111 11211 1333333 345666666544311 1111 12346788
Q ss_pred EEEeeCCCeEEEEEc-CCeEEEecCC-------------CcceEEEeC-CCcEEEEeec--ceEEEEEeecCcceeccCC
Q 002881 277 IGYMKSSRRIVIGYD-EGTIMVKIGR-------------EEPVASMDN-SGKIIWAKHN--EIQTVNIKSVGADYEVTDG 339 (871)
Q Consensus 277 i~~~~~~~~l~~g~~-dg~i~i~~~~-------------~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 339 (871)
++|.+.+..|..+.. .+.|...... .+.-.+++. .+.++|.... .+.+.+ .+|
T Consensus 354 ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~----------~~G 423 (619)
T 3s94_A 354 IDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR----------LNG 423 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE----------TTS
T ss_pred EEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEe----------CCC
Confidence 999886666665543 4444433211 122345553 4556666432 233332 123
Q ss_pred CeeeeeeeecCccccCCceEEECCCCCEEEEEcCC-cEEEEEee--ccc-----ccCcCceeEEEEecCCcEEEEec--C
Q 002881 340 ERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDG-EYIIYTAL--AWR-----NRSFGSALEFVWSSDGEYAVRES--S 409 (871)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~lav~~~~-~~~i~~~~--~~~-----~~~~~~~~~~~~s~~~~~~~~~~--~ 409 (871)
....... ...-..|..+++.|....|-++.-+ .-.|+... ... .........++.++++..+.... .
T Consensus 424 ~~~~~l~---~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 424 TMRKILI---SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp CSCEEEE---CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CeEEEEE---ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCC
Confidence 2211111 1122357889999874455444322 23343322 111 12344567788887665444433 5
Q ss_pred CeEEEeecccccceee
Q 002881 410 SKIKIFSKNFQEKRSV 425 (871)
Q Consensus 410 ~~i~i~~~~~~~~~~~ 425 (871)
++|..++++....+.+
T Consensus 501 ~~I~~~~~dG~~~~~~ 516 (619)
T 3s94_A 501 DKIEVMNTDGTGRRVL 516 (619)
T ss_dssp TEEEEEESSSCCCEEE
T ss_pred CEEEEEecCCCceEEE
Confidence 7788888776654443
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.60 E-value=9.5e-06 Score=90.97 Aligned_cols=259 Identities=14% Similarity=0.126 Sum_probs=159.6
Q ss_pred EEEcCCCCE----EEEEEcCCeEEEEeCCCCceeEEeeecCC----CEEEEEEeCCCCEEEEEe------CCCeEEEEEC
Q 002881 21 VDLHPSEPW----ILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGA------DDMFIRVYNY 86 (871)
Q Consensus 21 i~~s~~~~~----la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~------~dg~i~iw~~ 86 (871)
++++|.+.. |++++.++.|.-+|..+|+.+-....... .+.+--...++ .+++++ .+|.|+-+|.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~ 189 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDV 189 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEET
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEEC
Confidence 444444444 88888899999999999998876553220 11110001134 566655 3799999999
Q ss_pred CCCcEEEEEccCCCC-------------------------------------e-EEEEEcCCCCEEEEEECC--------
Q 002881 87 NTMDKVKVFEAHTDY-------------------------------------I-RCVAVHPTLPYVLSSSDD-------- 120 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~-------------------------------------i-~~i~~~~~~~~l~~~~~d-------- 120 (871)
.+|+.+..+...... + ..+++.+....++.++.+
T Consensus 190 ~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~ 269 (599)
T 1w6s_A 190 KTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM 269 (599)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcc
Confidence 999998877532211 0 134566777788887765
Q ss_pred --------CeEEEEECCCCceEEEEeec--CC--------cceEEEEEe-cCCC---CEEEEEECCCcEEEEECCCCCCe
Q 002881 121 --------MLIKLWDWEKGWMCTQIFEG--HS--------HYVMQVTFN-PKDT---NTFASASLDRTIKIWNLGSPDPN 178 (871)
Q Consensus 121 --------g~i~iwd~~~~~~~~~~~~~--~~--------~~v~~~~~~-p~~~---~~l~~~~~dg~i~i~d~~~~~~~ 178 (871)
+.|.-+|.+++.. .-.+.. |. .++. +... . ++ ..++.++.+|.+.++|..+++.+
T Consensus 270 r~gd~~y~~sv~Ald~~TG~~-~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 270 RPGDNKWTMTIFGRDADTGEA-KFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp SCSCCTTSSEEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCccccceEEEEeCCCCce-eeEeecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 3899999999844 333332 21 1121 2222 2 44 46777899999999999999877
Q ss_pred EEEecCC-------------CCe--------------------------eEEEEeecCCcCEEEEE--------------
Q 002881 179 FTLDAHQ-------------KGV--------------------------NCVDYFTGGDKPYLITG-------------- 205 (871)
Q Consensus 179 ~~~~~~~-------------~~i--------------------------~~i~~~~~~~~~~l~~~-------------- 205 (871)
....... .++ ..++++|... ++++.
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~--~~yv~~~~~~~~~~~~~~~ 424 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRE--LFFMGINHICMDWEPFMLP 424 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT--EEEEEEECEEEEEEECCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCC--EEEEeccccceeeeccccc
Confidence 6654211 011 1234444332 22211
Q ss_pred -------------------e------CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002881 206 -------------------S------DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 206 -------------------~------~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
+ ..|.|..||+.+++.+...... .+..+-.....+.+++.++.||.++.||.++
T Consensus 425 ~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 425 YKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp CCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCC
Confidence 1 3478999999999988776522 1221111223456788899999999999999
Q ss_pred CeEEEEEecCCccE-EEEEEeeCCCeE
Q 002881 261 YRLENTLNYGLERV-WAIGYMKSSRRI 286 (871)
Q Consensus 261 ~~~~~~~~~~~~~i-~~i~~~~~~~~l 286 (871)
|+.+..+....+.+ .-+.+..+|+..
T Consensus 504 G~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 504 GDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 99999887654322 224555666543
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.60 E-value=9.8e-06 Score=94.77 Aligned_cols=245 Identities=11% Similarity=0.003 Sum_probs=141.2
Q ss_pred cCCC-CEEEEEEc-CCCCEEEEEEc-CC----eEEEEeCCCC-ceeE-EeeecCCCEEEEEEeCCCCEEEEEeCC-----
Q 002881 13 QRSE-RVKSVDLH-PSEPWILASLY-SG----TVCIWNYQSQ-TMAK-SFEVTELPVRSAKFVARKQWVVAGADD----- 78 (871)
Q Consensus 13 ~h~~-~v~~i~~s-~~~~~la~~~~-dg----~v~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 78 (871)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+.. ....+.|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence 3443 68889999 99999887654 33 4999999998 6321 1211 13468899999988877664
Q ss_pred CeEEEEECCCCcE--EEEEc-cCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCc-eE--EEEeecCCcceEEEE
Q 002881 79 MFIRVYNYNTMDK--VKVFE-AHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGW-MC--TQIFEGHSHYVMQVT 149 (871)
Q Consensus 79 g~i~iw~~~~~~~--~~~~~-~~~~~i~~i~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~v~~~~ 149 (871)
..|.++++.++.. ...+. ........+.|+|+|++|+..+. ...|.++|+.++. .. ............++.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 3688889887642 23333 23345678899999999887663 3468889988652 22 333344455566676
Q ss_pred EecCCCCEEEEEECC----CcEEEEECCCCCCeEE-EecCCCCeeEEEEeecCCcCEEEEEeCCCe--EEEEEC------
Q 002881 150 FNPKDTNTFASASLD----RTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHT--AKVWDY------ 216 (871)
Q Consensus 150 ~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~--i~v~d~------ 216 (871)
|+. ++.+++....+ ..|..+++.++..... +..+...+..-.+.+.++. ++++...++. |.++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~-lv~~~~~~g~~~l~~~dl~~~~~~ 404 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNY-LVVAGRRAGLTRIWTMMADSQDGV 404 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSE-EEEEEEETTEEEEEEEECCTTTSC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCE-EEEEEEeCCEEEEEEEeccccccc
Confidence 664 44444454443 3677777764222222 2233333332334444443 6666777775 555665
Q ss_pred -CCCceEEEecCcc-cCeEEEEE----cCCCC-EEEEEECC---CcEEEEeCCCCe
Q 002881 217 -QTKSCVQTLEGHT-HNVSAVCF----HPELP-IIITGSED---GTVRIWHATTYR 262 (871)
Q Consensus 217 -~~~~~~~~~~~~~-~~v~~i~~----~p~~~-~l~~~~~d---g~v~iwd~~~~~ 262 (871)
.++.....+.... ..+..+.+ ++++. ++++.+.. +.+..+|+.+++
T Consensus 405 ~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 405 FKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3333133332111 22333433 33554 44444332 356677776654
No 265
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.58 E-value=1.6e-07 Score=110.19 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=113.5
Q ss_pred HHHHHHHHhCCChhhhhhcccC---cccceeeee-ccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 620 NSVARFLESRGMIEEAIEVATD---PDYRFELAI-QLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~~~---~~~~f~~~l-~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..++..+...+..++|..+-.. ...+....+ .+++|++|.+++.+.+.+..|.++|.+.+..|+++.|++||.+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd 1132 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD 1132 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 4466777778888888776433 233333344 889999999999999999999999999999999999999999998
Q ss_pred Ccch------------------------------------hHHHHHhcCCH------------HHHHHHHHHHHHcCCch
Q 002881 696 DLSG------------------------------------LLLLYSSLGDA------------EGISKLASLAKEQGKNN 727 (871)
Q Consensus 696 d~~~------------------------------------l~~l~~~~~~~------------~~~~~l~~~~~~~~~~~ 727 (871)
|.+. +.+.|...+.. ..+..++......|++.
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHH
Confidence 7765 11222222222 23456777888889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002881 728 VAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (871)
Q Consensus 728 ~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~ 764 (871)
.|..+|...+++.++...|++++++++|++.+++-..
T Consensus 1213 eA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1213 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999988877655
No 266
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.57 E-value=4.7e-05 Score=78.39 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=138.7
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCcEEE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDKVK 93 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~ 93 (871)
.....++|+|++..+++-..++.|..||... .....+. ....+..+++.++|+.+++.... ..|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 5678999999998555555689999999765 4433333 34568899999999965555432 257777877776543
Q ss_pred EEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee---------cCCcceEEEEEecCCCCEEEEEEC
Q 002881 94 VFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE---------GHSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 94 ~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
.... .......++..+++..+++-..++.|..+|..++........ ..-.....+ +|++..++++-+.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3321 222344555555544344444588999999875421111000 111234455 6733344555556
Q ss_pred CCcEEEEECCC-CCC--eEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEE--EecCcccCeEEEEEc
Q 002881 164 DRTIKIWNLGS-PDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--TLEGHTHNVSAVCFH 238 (871)
Q Consensus 164 dg~i~i~d~~~-~~~--~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~i~~~ 238 (871)
.+.|..|++.. ++. ...+.. ......+++.+++. ++++....+.|.+++.. ++... .+.......++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~--l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN--LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC--EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC--EEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 78999999864 321 122211 13346678888775 66666667899999975 65532 333333568999998
Q ss_pred ---CCCCEEEEEECCC
Q 002881 239 ---PELPIIITGSEDG 251 (871)
Q Consensus 239 ---p~~~~l~~~~~dg 251 (871)
|++..|++++..+
T Consensus 264 g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CSTTTTTEEEEEECTT
T ss_pred cccCCCCEEEEECCCC
Confidence 8877777666543
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.56 E-value=0.00032 Score=74.92 Aligned_cols=248 Identities=10% Similarity=-0.051 Sum_probs=157.9
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCC----cEEEEEccCCCC
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTM----DKVKVFEAHTDY 101 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~----~~~~~~~~~~~~ 101 (871)
.++|+.+. ...|+..++.......... ....+..++|++.+..|+... ..+.|..++++.. .....+......
T Consensus 83 ~~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 83 IAYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp SCEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred cceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 34566654 5789999988765544443 445788999999877777665 4678999988752 233344434556
Q ss_pred eEEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CCcEEEEECCCCCCeE
Q 002881 102 IRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPNF 179 (871)
Q Consensus 102 i~~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~ 179 (871)
...+++.+.+..|+.+ ...+.|.+.+++.. .........-.....++++|.++.++++-.. .+.|...++.......
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~-~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTC-SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCC-ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 8899999855555554 45788999998866 3334444344457899999944444444323 4789999987655444
Q ss_pred EEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 180 ~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
.....-...+.+++++.+.. ++++-...+.|..+|+........... ......+++... +.++.+-...+.|..+|
T Consensus 240 ~~~~~l~~P~glavd~~~~~-lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGR-LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSAN 317 (400)
T ss_dssp EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEE
T ss_pred EEECCCCceEEEEEEeCCCE-EEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEE
Confidence 44444456789999987663 444445678899999874433222221 233456777743 34556666677898888
Q ss_pred CCCCeEEEEEecCCccEEEEEE
Q 002881 258 ATTYRLENTLNYGLERVWAIGY 279 (871)
Q Consensus 258 ~~~~~~~~~~~~~~~~i~~i~~ 279 (871)
..+|+....+.........+..
T Consensus 318 ~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 318 RLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSSCCCCEEEECSCSCEEEEEE
T ss_pred cCCCCceEEEecCCCCCceEEE
Confidence 7777766666555444555543
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.53 E-value=2.7e-05 Score=87.59 Aligned_cols=257 Identities=11% Similarity=0.057 Sum_probs=158.6
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCC----CEE-EEEEeC---CCC-EEEEEeC------CCeEEEEECCCCcE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVR-SAKFVA---RKQ-WVVAGAD------DMFIRVYNYNTMDK 91 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~-~~~~~~---~~~-~l~~~~~------dg~i~iw~~~~~~~ 91 (871)
+..+++++.++.|.-+|..+|+.+-....... .+. .-.... +|+ .+++++. +|.|.-+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45688888899999999999998876654321 111 111111 233 5666653 78999999999998
Q ss_pred EEEEccCCCCe-----------------------------------------EEEEEcCCCCEEEEEEC-----------
Q 002881 92 VKVFEAHTDYI-----------------------------------------RCVAVHPTLPYVLSSSD----------- 119 (871)
Q Consensus 92 ~~~~~~~~~~i-----------------------------------------~~i~~~~~~~~l~~~~~----------- 119 (871)
+.........+ ..+++.|....+++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654211000 13466677777877763
Q ss_pred ---------C----CeEEEEECCCCceEEEEee-cCC--------cceEEEEEe-cCCC---CEEEEEECCCcEEEEECC
Q 002881 120 ---------D----MLIKLWDWEKGWMCTQIFE-GHS--------HYVMQVTFN-PKDT---NTFASASLDRTIKIWNLG 173 (871)
Q Consensus 120 ---------d----g~i~iwd~~~~~~~~~~~~-~~~--------~~v~~~~~~-p~~~---~~l~~~~~dg~i~i~d~~ 173 (871)
| +.|.-+|.+++...-+.-. .|. .++. +... . ++ ..++.++.+|.+.++|..
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECC
Confidence 2 5899999999844433222 221 1221 2221 2 34 378889999999999999
Q ss_pred CCCCeEEEecCC-------------CCe--------------------------------eEEEEeecCCcCEEEEEe--
Q 002881 174 SPDPNFTLDAHQ-------------KGV--------------------------------NCVDYFTGGDKPYLITGS-- 206 (871)
Q Consensus 174 ~~~~~~~~~~~~-------------~~i--------------------------------~~i~~~~~~~~~~l~~~~-- 206 (871)
+++.+....... .++ ..++++|... ++++..
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g--~~yv~~~~ 432 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG--LFYVPANH 432 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC--CEEEEEEC
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC--EEEEechh
Confidence 988776654321 000 0223343332 232221
Q ss_pred -------------------------------CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 207 -------------------------------DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 207 -------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
.+|.|..||+.+++.+....... ++..-.....+.++++++.||.++.
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 25789999999999887765332 2222112224568888999999999
Q ss_pred EeCCCCeEEEEEecCCccE-EEEEEeeCCCeEEE
Q 002881 256 WHATTYRLENTLNYGLERV-WAIGYMKSSRRIVI 288 (871)
Q Consensus 256 wd~~~~~~~~~~~~~~~~i-~~i~~~~~~~~l~~ 288 (871)
||.++|+.+..+....+.. .-+.+..+|+..++
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 9999999999888764322 12566677764443
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.52 E-value=3e-05 Score=74.70 Aligned_cols=191 Identities=12% Similarity=0.058 Sum_probs=127.7
Q ss_pred hhhhhcccCCC--CEEEEEEcCCCCEEEEEEcC--CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCe
Q 002881 6 EIKRKLAQRSE--RVKSVDLHPSEPWILASLYS--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMF 80 (871)
Q Consensus 6 ~~~~~~~~h~~--~v~~i~~s~~~~~la~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~ 80 (871)
++.+.+ .|.. -...+.|++ +.+..+.+.. +.|+++|+.+++.+..+..... .......+.++.|... ..++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCE
Confidence 444555 4543 467899987 4444444443 4899999999999988875433 2223333345556555 45899
Q ss_pred EEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeec-CC---cceEEEEEecCCCC
Q 002881 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HS---HYVMQVTFNPKDTN 156 (871)
Q Consensus 81 i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~p~~~~ 156 (871)
+.+||.++.+.+.++...... ..++ +++..|+++..++.|.++|..+......+-.+ +. ..+..+.|. ++.
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~ 161 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGE 161 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTE
T ss_pred EEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCE
Confidence 999999999999998754322 3444 56777777777899999999987444333221 21 235667776 466
Q ss_pred EEEEEECCCcEEEEECCCCCCeEEEecC-------------CCCeeEEEEeecCCcCEEEEE
Q 002881 157 TFASASLDRTIKIWNLGSPDPNFTLDAH-------------QKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~~~l~~~ 205 (871)
.++....+..|.+.|..+++....+... ..-.+.|+|+|.++. ++++|
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~-lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR-LFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE-EEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE-EEEEC
Confidence 6655556889999999999887776421 134688999998764 55555
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=1.4e-05 Score=77.63 Aligned_cols=189 Identities=7% Similarity=0.015 Sum_probs=127.4
Q ss_pred hhhhcccCCCC--EEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEE
Q 002881 7 IKRKLAQRSER--VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRV 83 (871)
Q Consensus 7 ~~~~~~~h~~~--v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i 83 (871)
+.+++ .|... ...+.|+. +.+..+.+.+|.|+++|+++++.+..+ ... ........++++.|... ..++.+.+
T Consensus 45 Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEE
Confidence 33444 34443 47888874 455556666889999999999998887 333 33332233445555544 45889999
Q ss_pred EECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee-cCC---cceEEEEEecCCCCEEE
Q 002881 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHS---HYVMQVTFNPKDTNTFA 159 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~---~~v~~~~~~p~~~~~l~ 159 (871)
||.++++.+.++..... -..++ +++..|+.+..++.|.++|..+......+.. .+. ..+..+.|. ++..++
T Consensus 121 ~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lya 195 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYA 195 (268)
T ss_dssp EETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEE
T ss_pred EECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEE
Confidence 99999999999875332 23344 5678888887889999999998744433322 122 234667787 455555
Q ss_pred EEECCCcEEEEECCCCCCeEEEecC-------------CCCeeEEEEeecCCcCEEEEE
Q 002881 160 SASLDRTIKIWNLGSPDPNFTLDAH-------------QKGVNCVDYFTGGDKPYLITG 205 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~~~l~~~ 205 (871)
....+..|.+.|..+++....+... ..-.+.|+|.|+++. ++++|
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r-lfVTG 253 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR-IFMTG 253 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC-EEEEE
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE-EEEeC
Confidence 5556889999999999887776432 135689999998764 56655
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=4.3e-05 Score=74.10 Aligned_cols=181 Identities=9% Similarity=-0.000 Sum_probs=128.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEE
Q 002881 101 YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (871)
Q Consensus 101 ~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 180 (871)
....+.|+. +.+..+.+.+|.|+.+|+++++..... ......-..++.. ++.+.++.-.++.+.+||..+.+.+.+
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 347888874 555666777889999999998655555 3322222345554 456666666789999999999998888
Q ss_pred EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc-----cCeEEEEEcCCCCEEEEEECCCcEEE
Q 002881 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFHPELPIIITGSEDGTVRI 255 (871)
Q Consensus 181 ~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~l~~~~~dg~v~i 255 (871)
+.....+ ..++ +++. .|+.+..++.|.++|..+.+.+.++.... ..+..+.|. +|.+.+....++.|.+
T Consensus 132 i~~~~eG-wGLt--~Dg~--~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 132 TRYSGEG-WGLC--YWNG--KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EECSSCC-CCEE--EETT--EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EeCCCce-eEEe--cCCC--EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence 8754332 3343 4565 46666678999999999998888776432 235667777 6655555546789999
Q ss_pred EeCCCCeEEEEEecC-------------CccEEEEEEeeCCCeEEEEEc
Q 002881 256 WHATTYRLENTLNYG-------------LERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 256 wd~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~l~~g~~ 291 (871)
.|..+++.+..+... ......|+++|+++.|.+.+.
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999988877643 135788999998877777654
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=0.00012 Score=70.37 Aligned_cols=192 Identities=9% Similarity=0.063 Sum_probs=129.4
Q ss_pred EEEEEccCC--CCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 91 KVKVFEAHT--DYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 91 ~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
.+..+ .|. .....+.|++ +.+..+.+.+ ..|+.+|+.++.............-..++.. ++....+.-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 44455 344 4567899986 4444555554 4899999999955444432222222344444 4556666667899
Q ss_pred EEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc-----cCeEEEEEcCCC
Q 002881 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFHPEL 241 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~i~~~p~~ 241 (871)
+.+||..+.+.+.++.....+ ..++ +++. .|+++..++.|.++|..+.+.+.++.... ..+..+.|. +|
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~--~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG-WALT--SDDS--HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CEEE--ECSS--CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEECCcCcEEEEEeCCCCc-eEEe--eCCC--EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence 999999999988888754433 3444 4555 35555668899999999998888776432 245667766 56
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEecC-------------CccEEEEEEeeCCCeEEEEEcC
Q 002881 242 PIIITGSEDGTVRIWHATTYRLENTLNYG-------------LERVWAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~l~~g~~d 292 (871)
...+..-.+..|.+.|..+++.+..+... ......|+++|+++.|.+.+..
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 55555546779999999999988877632 1356889999988887776643
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.48 E-value=0.00013 Score=76.33 Aligned_cols=207 Identities=11% Similarity=0.024 Sum_probs=134.9
Q ss_pred CCEEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEE
Q 002881 16 ERVKSVDLHPSEPWILASL-YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 93 (871)
..+..++|++.+..|..+. ..+.|..++...+.....+.........+++.+.+..|+.+ ...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3578999998777777665 47889999987765444343333456789999866666555 456899999987654444
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSD-D-MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
.+.........++++|.+..|+.+.. . +.|...+++.. .........-.....++++|.++.+.++-+..+.|..+|
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 44444456899999997766666544 3 78888888764 223332333345789999984555555555677899999
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 226 (871)
+........+.........+++. .+. ++++-...+.|..++..+++....+.
T Consensus 232 ~dG~~~~~~~~~~~~~P~giav~-~~~--ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 232 LDGSHRKAVISQGLPHPFAITVF-EDS--LYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEE-TTE--EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCceEEEEeCCCCCceEEEEE-CCE--EEEecCCCCeEEEEEccCCCccEEec
Confidence 87654433343334455667762 222 55555667788888866666555554
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.47 E-value=0.00013 Score=75.11 Aligned_cols=237 Identities=8% Similarity=-0.005 Sum_probs=148.2
Q ss_pred CEEEEEEcCCeEEEEeCCCCc--eeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcE-EEEEccCCCCeE
Q 002881 28 PWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDK-VKVFEAHTDYIR 103 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~~~~~i~ 103 (871)
++|+.+. ...|+..++.... ....+. .-..+..++|++.+..|+... ..+.|..++.+++.. ...+........
T Consensus 5 p~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 5 PLLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp CEEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred cEEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 4566554 5679999988763 222222 223467899999766666554 467899999876532 222222234567
Q ss_pred EEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE--CCCcEEEEECCCCCCeEE
Q 002881 104 CVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS--LDRTIKIWNLGSPDPNFT 180 (871)
Q Consensus 104 ~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~ 180 (871)
.+++.+.+..|+.+ ...+.|.+++++.. ...............++++|. +..++.+. ..+.|...++........
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~ 160 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFII 160 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGG-GTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence 89998755555544 45688999998865 333333344455789999984 44454444 257899999865443333
Q ss_pred EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002881 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 181 ~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~ 260 (871)
....-...+.+++++++.. ++++-+..+.|..+|+.................++++..+ .++.+-...+.|..++..+
T Consensus 161 ~~~~l~~Pnglavd~~~~~-lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQK-LYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp ECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeccCCE-EEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCC
Confidence 3333445688999986653 4555556789999998743332223333445667777643 4555655677888888877
Q ss_pred CeEEEEEecC
Q 002881 261 YRLENTLNYG 270 (871)
Q Consensus 261 ~~~~~~~~~~ 270 (871)
++....+...
T Consensus 239 G~~~~~i~~~ 248 (318)
T 3sov_A 239 GEGLREIHSD 248 (318)
T ss_dssp CCSCEEEECC
T ss_pred CCceEEEeCC
Confidence 7765555443
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.47 E-value=8.9e-05 Score=78.92 Aligned_cols=208 Identities=11% Similarity=0.024 Sum_probs=136.9
Q ss_pred CCEEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEE
Q 002881 16 ERVKSVDLHPSEPWILASL-YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 93 (871)
..+..++|++.+..|+.+. .++.|..++...+.....+.........+++.+.+..|+.. ...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4578899998777676655 47889999987665444443333456788999876666555 446789888887554444
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSD-D-MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
.+.........++++|.+..|+.+.. . +.|...+++.. .........-.....++++|.++.++++-+..+.|..+|
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 44444466899999998777776654 3 67888888765 333333333445789999984555555555677899999
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 227 (871)
+........+.........+++. .+. ++++-...+.|..++..+++....+..
T Consensus 275 ~dG~~~~~~~~~~~~~P~giav~-~~~--ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 275 LDGSHRKAVISQGLPHPFAITVF-EDS--LYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEE-TTE--EEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCCeeEEEEECCCCCceEEEEE-CCE--EEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 87654443443334455677772 222 566666778888888666766555543
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.45 E-value=8e-05 Score=72.91 Aligned_cols=202 Identities=10% Similarity=0.076 Sum_probs=137.5
Q ss_pred hcccCCCCEEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCceeEEeeec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002881 10 KLAQRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (871)
Q Consensus 10 ~~~~h~~~v~~i~~s~~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 87 (871)
.+.+-.+.+..++|+|++..|+ +...++.|...|.. ++..+.+... ....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999876555 46678899999987 8888777532 3567889999988766665567889999876
Q ss_pred CCcE---EEEEc------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--CceEEEEee-------cCCcceEEEE
Q 002881 88 TMDK---VKVFE------AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK--GWMCTQIFE-------GHSHYVMQVT 149 (871)
Q Consensus 88 ~~~~---~~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~-------~~~~~v~~~~ 149 (871)
.... +.... ..+.....++|+|.++.|+++.......+|.++. ......... .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 22221 2344568999999998888887765555655541 001112111 1233578999
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCC---------CCeeEEEEeecCCcCEEEEEeCCCeEEEEEC
Q 002881 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ---------KGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (871)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~ 216 (871)
++|..+++++....++.+..+|... +....+.-.. ...-.|++.++|+ +.+.++.+.++.|.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~---lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN---IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC---EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC---EEEEcCCceEEEEEe
Confidence 9997777888888888999999764 4555443322 2557899998886 555577777777754
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.45 E-value=3.7e-06 Score=96.99 Aligned_cols=269 Identities=11% Similarity=0.003 Sum_probs=153.8
Q ss_pred EEEEcC-CCCEEEEEEcCC-----------eEEEEeCCCCceeE--Eeee-cCCCEEEEEEeCCCCEEEEEeC-CCeEEE
Q 002881 20 SVDLHP-SEPWILASLYSG-----------TVCIWNYQSQTMAK--SFEV-TELPVRSAKFVARKQWVVAGAD-DMFIRV 83 (871)
Q Consensus 20 ~i~~s~-~~~~la~~~~dg-----------~v~iwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 83 (871)
+.++.| +++.++.|+.++ .+.+||..+++... .+.. +.....++++.+++..+++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887532 58899998875432 2221 2333445778899999999984 568999
Q ss_pred EECCCCcEEEEEccCCC-CeEEEEEcCCCCEEEEEE-CC-----CeEEEEECCCCceEEEEe----ecCCcceEEEEEec
Q 002881 84 YNYNTMDKVKVFEAHTD-YIRCVAVHPTLPYVLSSS-DD-----MLIKLWDWEKGWMCTQIF----EGHSHYVMQVTFNP 152 (871)
Q Consensus 84 w~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~p 152 (871)
||..+.+....-..+.. .-.+++..++++.++.|+ .+ ..+.+||..++ .....- ......-....+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-TWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT-EEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC-cceeCCCccccccccccccceeec
Confidence 99987755433221211 123456667889888888 34 56999999876 333220 00000000001112
Q ss_pred CCCCEEEEEECC---------CcEEEEECCCCCCeEEEecCC---------CCeeEEEEeecCCcCEEEEEeCCC-----
Q 002881 153 KDTNTFASASLD---------RTIKIWNLGSPDPNFTLDAHQ---------KGVNCVDYFTGGDKPYLITGSDDH----- 209 (871)
Q Consensus 153 ~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~~~l~~~~~dg----- 209 (871)
++..++.++.+ ..+..||..+........... ..-.++.+...+. .+++.|+.++
T Consensus 349 -~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~-~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 349 -DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG-KILTFGGSPDYQDSD 426 (656)
T ss_dssp -TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTT-EEEEECCBSSSSSSB
T ss_pred -CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCC-eEEEEeCCCCCCCCC
Confidence 34455555444 356788887665333222111 1123333332222 2677777432
Q ss_pred ------eEEEEECCCCceEEEe--cCcccC-eEEEEEcCCCCEEEEEECC-----------CcEEEEeCCCCeEEEEE--
Q 002881 210 ------TAKVWDYQTKSCVQTL--EGHTHN-VSAVCFHPELPIIITGSED-----------GTVRIWHATTYRLENTL-- 267 (871)
Q Consensus 210 ------~i~v~d~~~~~~~~~~--~~~~~~-v~~i~~~p~~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~-- 267 (871)
.|.+||..+....... ..+... -.+.+..|++++++.|+.+ ..+.+||..+.+-...-
T Consensus 427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~ 506 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 506 (656)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence 6788888776544332 222222 2355677899999999864 46899998776533211
Q ss_pred ecCCccEEEEEEeeCCCeEEEEEc
Q 002881 268 NYGLERVWAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 268 ~~~~~~i~~i~~~~~~~~l~~g~~ 291 (871)
........+..+.|+++.+++|+.
T Consensus 507 ~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 507 SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCccccccHhhcCCCcEEEecCCC
Confidence 111112234455689999888875
No 278
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.42 E-value=0.00011 Score=76.30 Aligned_cols=215 Identities=10% Similarity=0.027 Sum_probs=132.3
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcc-------------------CCCCeEEEEEcCCCCEEEEEEC
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA-------------------HTDYIRCVAVHPTLPYVLSSSD 119 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------------------~~~~i~~i~~~~~~~~l~~~~~ 119 (871)
...+++|+++++.++++..++.|..|+..+++....... ....+..+++.+++..|+++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 456789999998788888899999999876544322110 0135788999984345777766
Q ss_pred CCeEEEEECCCCceEEEEee---c-CCcceEEEEEecCCCCEEEEEEC-----------------CCcEEEEECCCCCCe
Q 002881 120 DMLIKLWDWEKGWMCTQIFE---G-HSHYVMQVTFNPKDTNTFASASL-----------------DRTIKIWNLGSPDPN 178 (871)
Q Consensus 120 dg~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~p~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~ 178 (871)
.+.|..+|..++ ....... + .......+++.|.++++.++-.. ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGG-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCE-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCC-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 666888887754 2222211 1 11346778888723455554322 367888887665432
Q ss_pred EEEecCCCCeeEEEEeecCCcCEEEEE-eCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCCCCEEEEEEC------
Q 002881 179 FTLDAHQKGVNCVDYFTGGDKPYLITG-SDDHTAKVWDYQTKS--CVQTLEGHTHNVSAVCFHPELPIIITGSE------ 249 (871)
Q Consensus 179 ~~~~~~~~~i~~i~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~i~~~p~~~~l~~~~~------ 249 (871)
.... .....+.++++++++ .+.++ ...+.|.+|++.... ....+....+ ...+++.++|.+.++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~--~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSS--FVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEE-EESCCCEEEECTTSS--EEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred Eecc-CCccCcceEECCCCC--EEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 2222 223446789998876 45444 556899999987421 1111111223 778999999987666544
Q ss_pred ----CCcEEEEeCCCCeEEEEEecCC----ccEEEEEE
Q 002881 250 ----DGTVRIWHATTYRLENTLNYGL----ERVWAIGY 279 (871)
Q Consensus 250 ----dg~v~iwd~~~~~~~~~~~~~~----~~i~~i~~ 279 (871)
.+.|..+|. .++.+..+.... ..+.++++
T Consensus 255 ~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 255 HGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp TSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE
T ss_pred cCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE
Confidence 467888885 477666665442 23555554
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.42 E-value=0.00035 Score=74.66 Aligned_cols=219 Identities=11% Similarity=-0.002 Sum_probs=140.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCC----ceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECC
Q 002881 14 RSERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYN 87 (871)
Q Consensus 14 h~~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 87 (871)
.-..+..++|++.+..|..+.. ++.|..+++... .....+.........+++.+.+..|+.. ...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 3457889999997777776654 678999987652 2233333334567899999865555555 457899999988
Q ss_pred CCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002881 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 88 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (871)
.......+.........|++.|.+.+|+.+.. .+.|...+++.. .........-.....++++|.++.+.++-+..+
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 66555455444556899999997777776653 378999998765 333333333356789999984444444445567
Q ss_pred cEEEEECCCCCCeEEEec--CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEE
Q 002881 166 TIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~ 236 (871)
.|..+|+........... .......++. .++. ++++-...+.|..+|..+++.+..+........++.
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~-lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDK-VFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTE-EEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCE-EEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 899999976544333332 1233445655 3332 566666678888888777776666654444444443
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.40 E-value=0.00062 Score=70.15 Aligned_cols=208 Identities=12% Similarity=0.016 Sum_probs=131.2
Q ss_pred CCCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCC---CceeE-EeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCC
Q 002881 15 SERVKSVDLHPSEPWILASLY-SGTVCIWNYQS---QTMAK-SFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNT 88 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~ 88 (871)
...+.+++|++++..|+.+.. ++.|..++..+ +.... .+...-..+..+++.+.+..|+.+ ...+.|.+++.+.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 345789999998776776654 68899999876 12222 232222456889999866666555 5578999999875
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
......+.........++++|.+..|+.+... +.|...+++.. .........-.....++++|.++.++++-+..+.
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 54433344344568999999977777766543 68888888754 3222322333457899999844445555556679
Q ss_pred EEEEECCCCCCeEEEec--CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec
Q 002881 167 IKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 226 (871)
|..+|+........... .......+++. ++. ++++-...+.|..++..+++.+..+.
T Consensus 188 I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~-ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDK-VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTE-EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEecCCCceEEEeecCCccCCcEEEEEE--CCE-EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 99999975433222222 12345566663 222 55666667888888877776555443
No 281
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.39 E-value=0.00078 Score=69.82 Aligned_cols=268 Identities=7% Similarity=-0.025 Sum_probs=151.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee----ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE----VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 90 (871)
...+.+|.|.+++..+++ +..|.|.. ..+.|+.=.... .....+.++.+.+ +. +++++..+.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 457999999888876774 45776533 334343212221 1244688999986 43 444556675543 334344
Q ss_pred EEEEEc---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 91 KVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 91 ~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
.-.... .+...+..+.+.+++..++ ++.+|.|.. ..+.+.............+..+.+.| ++.+++++ .+|.+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~G~~ 185 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVS-SRGSF 185 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEE-TTSSE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEE-CCCcE
Confidence 333322 2335577888877665554 445665533 22333334444445566789999998 56666554 45655
Q ss_pred EEEECCCCCCeEEE-ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC----cccCeEEEEEcCCCC
Q 002881 168 KIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPELP 242 (871)
Q Consensus 168 ~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~v~~i~~~p~~~ 242 (871)
..-+-..+..-..+ ......+..+.+.+++. +++++.+|.+++.+...++....+.. ....+.++.+.|++.
T Consensus 186 ~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~---~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 186 YSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR---LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp EEEECTTCSSCEEEECCSSSCEEEEEECTTSC---EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred EEEeCCCCCceeECCCCCCCccceeEECCCCC---EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 44332212222222 23456677888877664 55666788887764332333222221 223588999998877
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEEec---CCccEEEEEEeeCCCeEEEEEcCCeEEE
Q 002881 243 IIITGSEDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (871)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~g~~dg~i~i 297 (871)
+++++. +|.| ++....|+.-..+.. ....+.++.+.+++. +++++.+|.+.-
T Consensus 263 ~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~ 317 (327)
T 2xbg_A 263 VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLR 317 (327)
T ss_dssp EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEE
T ss_pred EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEE
Confidence 666654 6777 344444544333432 124678888876554 566667787654
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00014 Score=78.59 Aligned_cols=235 Identities=9% Similarity=0.121 Sum_probs=138.4
Q ss_pred CEEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC----C-eEEEEECCCCc
Q 002881 17 RVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----M-FIRVYNYNTMD 90 (871)
Q Consensus 17 ~v~~i~~s~-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g-~i~iw~~~~~~ 90 (871)
....++++| ++..|.++...+.|+.+|..++...... ........++|++++++|+++... . .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 567899998 4666777766688999998776654433 345568899999999977776542 1 34444433 22
Q ss_pred EE--EEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEEee-cCCcceEEEEEecCCCC-EEEEEECCC
Q 002881 91 KV--KVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTN-TFASASLDR 165 (871)
Q Consensus 91 ~~--~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~-~l~~~~~dg 165 (871)
.. ..+.. ......++++| ++..+++-..++.|..++..++ ....... ........++|+| +++ ++++-...+
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~~~~~P~gia~~p-dG~~lyv~d~~~~ 292 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQDSGWEFHIQFHP-SGNYAYIVVVNQH 292 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTT
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcCCCCcceeEEEcC-CCCEEEEEECCCC
Confidence 21 22221 23456788999 5665555556789999999876 3322222 2223467899999 677 455555678
Q ss_pred cEEEEECCCCC----CeEEEecC---------------CCCee-EEEEee------cCCcCEEEEEeCCCeEEEEECCCC
Q 002881 166 TIKIWNLGSPD----PNFTLDAH---------------QKGVN-CVDYFT------GGDKPYLITGSDDHTAKVWDYQTK 219 (871)
Q Consensus 166 ~i~i~d~~~~~----~~~~~~~~---------------~~~i~-~i~~~~------~~~~~~l~~~~~dg~i~v~d~~~~ 219 (871)
.|..++..... ....+.+. -.... .+...+ +.++.++++-...+.|+.++. ++
T Consensus 293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G 371 (430)
T 3tc9_A 293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG 371 (430)
T ss_dssp EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS
T ss_pred EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC
Confidence 89998865421 11222211 01112 333332 122324555555678888883 45
Q ss_pred ceEEEecCc------------------ccCeEEEEEcCC-CCEEEEEECCCcEEEEeC
Q 002881 220 SCVQTLEGH------------------THNVSAVCFHPE-LPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 220 ~~~~~~~~~------------------~~~v~~i~~~p~-~~~l~~~~~dg~v~iwd~ 258 (871)
... ++.+. -.....++++|+ +.++++-..++.|+.++.
T Consensus 372 ~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 372 RVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred cEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 432 22211 124678888884 555555555667777654
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.35 E-value=0.00044 Score=67.66 Aligned_cols=200 Identities=10% Similarity=0.077 Sum_probs=132.8
Q ss_pred eeecCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCcEEEEEcc-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 002881 53 FEVTELPVRSAKFVARKQWVVA-GADDMFIRVYNYNTMDKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (871)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~ 130 (871)
+.+-...+..++|+|+++.|++ ...++.|...|.. ++.++.+.- -......+++.+++.++++.-.++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 3444567999999998776664 6678899999988 888777642 224678899999887666655678899998875
Q ss_pred Cce--EEEEee------cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC---CCCeEEEe-------cCCCCeeEEE
Q 002881 131 GWM--CTQIFE------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTLD-------AHQKGVNCVD 192 (871)
Q Consensus 131 ~~~--~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~-------~~~~~i~~i~ 192 (871)
... ...... ..+.....++|+| .++.|+++.......+|.... ......+. .....+..++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 532 112211 1234468999999 565666666655555555431 11122221 1234568899
Q ss_pred EeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcc---------cCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT---------HNVSAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
+.|.... +++....++.+.++|.. ++.+..+.-.. ...-.|+|.|+|++.++ ++.+.++.+.
T Consensus 180 ~dp~tg~-lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNT-LLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTE-EEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCe-EEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 9987654 77778888999999976 55655443221 25689999999985555 7766666665
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.29 E-value=0.00055 Score=70.37 Aligned_cols=206 Identities=12% Similarity=0.026 Sum_probs=133.9
Q ss_pred CEEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCcee-EEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEE
Q 002881 17 RVKSVDLHPSEPWILASL-YSGTVCIWNYQSQTMA-KSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~-~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 93 (871)
.+.+++|++.+..|..+. .++.|..++...+... ..+...-.....+++.+.+..|+.. ...+.|.+++.+......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 467899999766666654 4678999998765322 2233233456789999866656554 457899999987544333
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
.+.........+++.|.+..|+.+.. .+.|...+++.. .........-.....++++|.++.+.++=+..+.|..+|
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 34344566899999997777776663 578888888754 222333333345689999994455555555678899999
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 226 (871)
+..................+++. ++. ++.+-...+.|..++..+++....+.
T Consensus 195 ~dG~~~~~~~~~~~~~P~glav~--~~~-lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 195 LDGTNRQAVVKGSLPHPFALTLF--EDI-LYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTSCSCEEEECSCCSCEEEEEEE--TTE-EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCceEEEecCCCCCceEEEEe--CCE-EEEEecCCCeEEEEECCCCCceEEEe
Confidence 87644333333334455666664 332 56666667889999987776655554
No 285
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.24 E-value=0.0038 Score=61.84 Aligned_cols=230 Identities=17% Similarity=0.200 Sum_probs=148.6
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEccC
Q 002881 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-MDKVKVFEAH 98 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~ 98 (871)
+.-.||..+.+|.-. ..++.|||+++.+.++.+... .+|..=.|..+.. |+..+ +..|.-|++.. ..+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 344689888888765 788999999999988888754 5787888876554 44444 35799999974 4566777655
Q ss_pred C----CCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCceEEEEeecCCcceEEEEEe--cCCCCEEEEEECC-
Q 002881 99 T----DYIRCVAVHPTLPYVLSSSD-------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN--PKDTNTFASASLD- 164 (871)
Q Consensus 99 ~----~~i~~i~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~d- 164 (871)
. ..|..-..+++.++++..+- .|.+.+|+.+.+ ..+.+.+|......+... +...+.|+.+...
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 224 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 224 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--ccceeeeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 3 46777788888888775442 378999999875 677888886544333332 2122344444432
Q ss_pred --CcEEEEECCCC---CCeE---E--E-e---cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc
Q 002881 165 --RTIKIWNLGSP---DPNF---T--L-D---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (871)
Q Consensus 165 --g~i~i~d~~~~---~~~~---~--~-~---~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 230 (871)
+.+.+.++... .+.+ . + - ....-..++..++.-. ++..-+.-|.+.+||+.++.++..-+-...
T Consensus 225 ~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg--viyviTK~G~ihlyDleTgt~i~~nrIS~d 302 (365)
T 2xzh_A 225 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD--VVFLITKYGYIHLYDLETGTCIYMNRISGE 302 (365)
T ss_dssp TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC--EEEEEeCCcEEEEEEcccCcEEEEeccCCC
Confidence 58999998543 1111 1 1 0 1122234566665544 788889999999999999999887765555
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEe
Q 002881 231 NVSAVCFHPELPIIITGSEDGTVRIWH 257 (871)
Q Consensus 231 ~v~~i~~~p~~~~l~~~~~dg~v~iwd 257 (871)
+|...+-+....=++.....|.|.-..
T Consensus 303 ~iF~ta~~~~~~Gi~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 303 TIFVTAPHEATAGIIGVNRKGQVLSVC 329 (365)
T ss_dssp CEEEEEEEGGGTEEEEEETTCEEEEEE
T ss_pred ceEEecccCCCCcEEEEcCCCEEEEEE
Confidence 655444443333333334555544433
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.19 E-value=0.017 Score=65.15 Aligned_cols=200 Identities=9% Similarity=-0.039 Sum_probs=132.1
Q ss_pred CCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEE
Q 002881 16 ERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~ 93 (871)
..+..++|++.+..|..+.. ++.|..+++........+......+..+++.+.+..|+.+. ..+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 46889999998777776654 78899999876544444433334577899998777666554 46899999987554333
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002881 94 VFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (871)
Q Consensus 94 ~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (871)
.+...-.....|++.|....|+.+.. .+.|...+++.. ....... .-.....+++++.++.+.++-...+.|..+|
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d 194 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-ERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-ceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence 33344456799999997667776653 568888888765 2333333 3456789999994444455555567899999
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 221 (871)
+.+... ..+.........+++.. +. ++++-...+.|...|..+++.
T Consensus 195 ~dG~~~-~v~~~~l~~P~glav~~--~~-ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 195 MLGLNR-EVIADDLPHPFGLTQYQ--DY-IYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TTSCSC-EEEEECCSCEEEEEEET--TE-EEEEETTTTEEEEEETTTCCS
T ss_pred CCCCce-EEeeccCCCceEEEEEC--CE-EEEecCCCCEEEEEECCCCCc
Confidence 976544 33333334455666643 22 455555578888888766543
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00051 Score=74.13 Aligned_cols=156 Identities=8% Similarity=0.083 Sum_probs=100.8
Q ss_pred CEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECC-C----eEEEEECCCCc
Q 002881 59 PVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M----LIKLWDWEKGW 132 (871)
Q Consensus 59 ~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g----~i~iwd~~~~~ 132 (871)
....++++| ++..|+++...+.|+.+|..++...... ........++|++++++|+++... + .+...+.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 4666777766688999998876544433 345668899999999977776642 1 34445544332
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec-CCCCeeEEEEeecCCcCEEEEEeCCCeE
Q 002881 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (871)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~~~~~dg~i 211 (871)
.....+.. ......++++|.++.++++-..++.|..++..+......... .......++++|+++. ++++-...+.|
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~-lyv~d~~~~~I 294 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY-AYIVVVNQHYI 294 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE-EEEEETTTTEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE-EEEEECCCCEE
Confidence 21122221 223567889985566666666778999999876543222222 2234678999998873 34455567889
Q ss_pred EEEECC
Q 002881 212 KVWDYQ 217 (871)
Q Consensus 212 ~v~d~~ 217 (871)
..++..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 998765
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.18 E-value=0.018 Score=64.96 Aligned_cols=244 Identities=10% Similarity=-0.015 Sum_probs=157.7
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeee-cCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEEEccCCCCeEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVKVFEAHTDYIRC 104 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~ 104 (871)
.++|+.+ ..+.|+..++++......+.. .-..+..++|++.+..|+.+. .++.|..++++.......+.........
T Consensus 6 ~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 6 EAFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CcEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 4466665 467899999987654443332 224678999999877777665 4789999998765544444433345778
Q ss_pred EEEcCCCCEEEEEE-CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC--CCcEEEEECCCCCCeEEE
Q 002881 105 VAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL--DRTIKIWNLGSPDPNFTL 181 (871)
Q Consensus 105 i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 181 (871)
+++.+.+..|+.+. ..+.|.+.+++... ........-.....++++|..+ .|+.+.. .+.|...++.........
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G-~lY~tD~g~~~~I~r~~~dG~~~~~l~ 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEG-FMYWTEWGGKPKIDRAAMDGSERTTLV 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCC-eEEEeCCCCCCEEEEEeCCCCceEEEE
Confidence 99987766665554 46789999988653 2333323344578999999444 4444442 578888888765544333
Q ss_pred ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 002881 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261 (871)
Q Consensus 182 ~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~ 261 (871)
..-...+.+++.+.+.. ++++-...+.|..+|+..... ..+........++++.. +.++++-...+.|...|..++
T Consensus 163 -~~~~~P~GlalD~~~~~-LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 163 -PNVGRANGLTIDYAKRR-LYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp -CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred -CCCCCcceEEEccccCE-EEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 34456788999887653 455555678999999875433 33333334456788775 445555556788999998777
Q ss_pred eEEEEEecCCccEEEE
Q 002881 262 RLENTLNYGLERVWAI 277 (871)
Q Consensus 262 ~~~~~~~~~~~~i~~i 277 (871)
+....+......+..+
T Consensus 239 ~~~~~l~~~~~~p~~i 254 (628)
T 4a0p_A 239 QNRTIIQGHLDYVMDI 254 (628)
T ss_dssp CSCEEEECSCCSCCEE
T ss_pred CceEEEecCCCCccee
Confidence 7555555443333444
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.18 E-value=0.00062 Score=73.43 Aligned_cols=237 Identities=11% Similarity=0.091 Sum_probs=136.3
Q ss_pred CCEEEEEEcCC--CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCC
Q 002881 16 ERVKSVDLHPS--EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM-----FIRVYNYNT 88 (871)
Q Consensus 16 ~~v~~i~~s~~--~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~ 88 (871)
.....++|+|+ +..|.++...+.|+.++..++....... .......++|+++|+ |+++...+ .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999995 4556666555899999987776654433 445689999999999 55554321 233333222
Q ss_pred CcE-EEEEccCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCceEEEEeec-CCcceEEEEEecCCCC-EEEEEECC
Q 002881 89 MDK-VKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTN-TFASASLD 164 (871)
Q Consensus 89 ~~~-~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~-~l~~~~~d 164 (871)
+.. ...+. .......++++| ++...++-..++.|..+|..++......+.. ....-..++|+| +++ ++++-...
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~ 294 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGK 294 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEETTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCC
Confidence 111 01121 233456788999 5655545556788999998866331233222 222235699999 666 45555557
Q ss_pred CcEEEEECCC--CCC--eEEEecC---------------CCCeeEEEEee-------cCCcCEEEEEeCCCeEEEEECCC
Q 002881 165 RTIKIWNLGS--PDP--NFTLDAH---------------QKGVNCVDYFT-------GGDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 165 g~i~i~d~~~--~~~--~~~~~~~---------------~~~i~~i~~~~-------~~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
+.|..++... +.. ...+.+. -.....+++.+ +..+.++++-..++.|+.++. +
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence 8899988753 211 1222211 12245677721 222225555566788988885 4
Q ss_pred CceEEEecCc------------------ccCeEEEEEc-CCCCEEEEEECCCcEEEEeC
Q 002881 219 KSCVQTLEGH------------------THNVSAVCFH-PELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 219 ~~~~~~~~~~------------------~~~v~~i~~~-p~~~~l~~~~~dg~v~iwd~ 258 (871)
+.. .++.+. -.....++++ +++.++++-..++.|+.+++
T Consensus 374 G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 374 GRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp SEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 533 333221 1236678888 55555555555666776654
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.17 E-value=0.0072 Score=59.92 Aligned_cols=251 Identities=10% Similarity=0.117 Sum_probs=160.5
Q ss_pred CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEE
Q 002881 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLS 116 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 116 (871)
..|.|.|+.++..+..-... --+.-.+|..+.||.-. ..++.|+|+++..+++.+.- ...|..=.|-.+. .|+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEE
T ss_pred CEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEE
Confidence 37889998876554322211 12344588888887765 67899999999999988875 4567777887554 5666
Q ss_pred EECCCeEEEEECCCCceEEEEeecCC----cceEEEEEecCCCCEEEEEEC-------CCcEEEEECCCCCCeEEEecCC
Q 002881 117 SSDDMLIKLWDWEKGWMCTQIFEGHS----HYVMQVTFNPKDTNTFASASL-------DRTIKIWNLGSPDPNFTLDAHQ 185 (871)
Q Consensus 117 ~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~ 185 (871)
.+. ..|+-|+++....+.+.+..|. ..|..-..++ +.+.++..+- .|.+.+|+.+.. ..+.+++|.
T Consensus 123 VT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 199 (365)
T 2xzh_A 123 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 199 (365)
T ss_dssp EES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred EcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeee
Confidence 655 4799999987667778877763 4566677777 6666555432 367889987543 345556665
Q ss_pred CCeeEEEEeecCCc-CEEEEEeC---CCeEEEEECCCC---ce------EEEecC---cccCeEEEEEcCCCCEEEEEEC
Q 002881 186 KGVNCVDYFTGGDK-PYLITGSD---DHTAKVWDYQTK---SC------VQTLEG---HTHNVSAVCFHPELPIIITGSE 249 (871)
Q Consensus 186 ~~i~~i~~~~~~~~-~~l~~~~~---dg~i~v~d~~~~---~~------~~~~~~---~~~~v~~i~~~p~~~~l~~~~~ 249 (871)
.....+....+... .+++.+.. .+++.+.++... .+ +..+-. ..+-..++..++....+..-+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 43322222111111 12332222 258999988432 11 111111 1233567888888889999999
Q ss_pred CCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEE
Q 002881 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (871)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~ 296 (871)
-|.|++||+.++.++..-+...+.|...+......-++.-...|.+.
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred CcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 99999999999999888777777776666555444444444555543
No 291
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.15 E-value=0.0071 Score=62.46 Aligned_cols=225 Identities=8% Similarity=0.008 Sum_probs=123.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Q 002881 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (871)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~ 132 (871)
...+.++.|.+.+..+++ +..|.| +...+.++.-.... .....+..+.+++ + .+++++.+|.|.. ..+.+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCC
Confidence 457899999887777775 456765 33444443222221 1244688999986 3 4445566775554 333332
Q ss_pred eEEEEee--cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE-ecCCCCeeEEEEeecCCcCEEEEEeCCC
Q 002881 133 MCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 133 ~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
....... .+...+..+.+.+ ++..++ ++.+|.|.. ....++.-... ......+..+.+.+++. +++++ .+|
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~--~~~~g-~~G 183 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALG-NGSAEM-ITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE--YVAVS-SRG 183 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEE-TTEEEE-EETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC--EEEEE-TTS
T ss_pred CceECccccCCCCCeEEEEEEC-CCCEEE-EeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc--EEEEE-CCC
Confidence 2222221 2334567777765 444444 445665533 22333332222 34455688888887654 55555 445
Q ss_pred eEEE-EEC--CCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecC----CccEEEEEEeeC
Q 002881 210 TAKV-WDY--QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG----LERVWAIGYMKS 282 (871)
Q Consensus 210 ~i~v-~d~--~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~i~~i~~~~~ 282 (871)
.+.. .|- .+.+.+. ......+..+.+.|++.++ .++.+|.+++.+...++.-..+... ...+.++.+.++
T Consensus 184 ~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 184 SFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp SEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred cEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence 4443 332 2222321 2345678899999988755 4556788877643334433333222 235788888887
Q ss_pred CCeEEEEEcCCeEE
Q 002881 283 SRRIVIGYDEGTIM 296 (871)
Q Consensus 283 ~~~l~~g~~dg~i~ 296 (871)
+..++++. +|.+.
T Consensus 261 ~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 261 NEVWLAGG-AGALL 273 (327)
T ss_dssp SCEEEEES-TTCEE
T ss_pred CEEEEEeC-CCeEE
Confidence 77666554 55553
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.12 E-value=0.0021 Score=74.42 Aligned_cols=208 Identities=11% Similarity=0.004 Sum_probs=133.3
Q ss_pred CCCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCCC----ceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Q 002881 15 SERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNT 88 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~ 88 (871)
...+..++|++.+..|+.+.. .+.|+.+++... .....+...-..+..|++.+.+..|+.+. ..+.|.+.+++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 456789999997666666554 678888887653 22233332345677899998887666654 478999999886
Q ss_pred CcEEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
......+.........|++.|.+.+|+.+.. .+.|...++... ....+....-.....|++++..+.++++=...+.
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 5544444444556899999998777777653 268999998865 3334444344568899999844544454455678
Q ss_pred EEEEECCCCCCeEEEecCC--CCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec
Q 002881 167 IKIWNLGSPDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 226 (871)
|..+++........+.... .....+++ .++. ++++-...+.|...+..+++.+..+.
T Consensus 582 I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~-lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 582 ISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDK-VFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTE-EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEecCCCceEEEecCCCccCCCCEEEE--eCCE-EEEEECCCCEEEEEeCCCCcceEEee
Confidence 9999997655444443321 22344554 3332 45555566788888877776555553
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0036 Score=72.43 Aligned_cols=236 Identities=10% Similarity=-0.028 Sum_probs=144.9
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCC----cEEEEEccCCCCe
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTM----DKVKVFEAHTDYI 102 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~----~~~~~~~~~~~~i 102 (871)
.+|+.+. ...|+..++.......... ....+..++|++....|+... ..+.|+.+++... .....+.......
T Consensus 396 p~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 396 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CEEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 3555544 4568888877665444333 445678999999766666554 4678998988753 2233444345567
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-CcEEEEECCCCCCeEE
Q 002881 103 RCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RTIKIWNLGSPDPNFT 180 (871)
Q Consensus 103 ~~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~ 180 (871)
..|++.+.+..|+.+ ...+.|.+.+++.. ....+....-.....|+++|..+.++++-... +.|...++.+......
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCC-eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 789999877666655 45689999999865 33344444445578999999444444443333 7899999876554444
Q ss_pred EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002881 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (871)
Q Consensus 181 ~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~ 258 (871)
+...-...+.|++.+.... ++++-...+.|..+++........+.. .-....+|++..+ .++++-...+.|...+.
T Consensus 553 v~~~l~~P~GLavD~~~~~-LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGR-LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 630 (791)
T ss_dssp ECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEET
T ss_pred EeCCCCCceEEEEecCCCe-EEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeC
Confidence 4444456788999876653 444445567899999874433333322 1223456666433 34444445567777776
Q ss_pred CCCeEEEEEe
Q 002881 259 TTYRLENTLN 268 (871)
Q Consensus 259 ~~~~~~~~~~ 268 (871)
.+|+.+..+.
T Consensus 631 ~tG~~~~~l~ 640 (791)
T 3m0c_C 631 LTGSDVNLLA 640 (791)
T ss_dssp TTCCCCEEEE
T ss_pred CCCcceEEee
Confidence 6665544443
No 294
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.08 E-value=0.00035 Score=80.35 Aligned_cols=227 Identities=9% Similarity=0.014 Sum_probs=128.2
Q ss_pred EEEEEeC-CCCEEEEEeCCC-----------eEEEEECCCCcEE--EEEc-cCCCCeEEEEEcCCCCEEEEEEC-CCeEE
Q 002881 61 RSAKFVA-RKQWVVAGADDM-----------FIRVYNYNTMDKV--KVFE-AHTDYIRCVAVHPTLPYVLSSSD-DMLIK 124 (871)
Q Consensus 61 ~~~~~~~-~~~~l~~~~~dg-----------~i~iw~~~~~~~~--~~~~-~~~~~i~~i~~~~~~~~l~~~~~-dg~i~ 124 (871)
..+++.+ +++.++.|+.+. .+.+||..+++.. ..+. .+.....++++..++..+++|+. +..+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 3567777 888888887542 6889998876532 2332 23333445778889999999884 46899
Q ss_pred EEECCCCceEEEEeecCCc-ceEEEEEecCCCCEEEEEE-CC-----CcEEEEECCCCCCeEEEecCC-CCee----EEE
Q 002881 125 LWDWEKGWMCTQIFEGHSH-YVMQVTFNPKDTNTFASAS-LD-----RTIKIWNLGSPDPNFTLDAHQ-KGVN----CVD 192 (871)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~~-~~i~----~i~ 192 (871)
+||..++ .....-.-+.. .-.+++..+ ++++++.|+ .+ ..+.+||..+.+-.. +.... .+.. ...
T Consensus 269 ~yd~~t~-~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 269 LYDSSSD-SWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEEGGGT-EEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGG
T ss_pred EecCcCC-ceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccccce
Confidence 9999876 33332111111 112344555 678888888 34 568999987654221 11000 0000 000
Q ss_pred EeecCCcCEEEEEeC---------CCeEEEEECCCCceEEEecCccc---------CeEEEEEcC-CCCEEEEEECCC--
Q 002881 193 YFTGGDKPYLITGSD---------DHTAKVWDYQTKSCVQTLEGHTH---------NVSAVCFHP-ELPIIITGSEDG-- 251 (871)
Q Consensus 193 ~~~~~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~~~---------~v~~i~~~p-~~~~l~~~~~dg-- 251 (871)
+..++. .++.|+. ...+..||..+.........+.. .-.++.+.. ++++++.|+.++
T Consensus 346 ~~~~~~--iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 346 YRSDNH--AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GTTTCS--CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred eecCCc--eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 111121 3344433 34578888887654333222211 234455543 677888887543
Q ss_pred ---------cEEEEeCCCCeEEEEE--ecCCccE-EEEEEeeCCCeEEEEEcC
Q 002881 252 ---------TVRIWHATTYRLENTL--NYGLERV-WAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 252 ---------~v~iwd~~~~~~~~~~--~~~~~~i-~~i~~~~~~~~l~~g~~d 292 (871)
.|.+||..+..-.... ..+..+. .+.+..|+++.+++|+.+
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6788888776644332 2233333 344566789988888754
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.07 E-value=0.0087 Score=61.78 Aligned_cols=204 Identities=18% Similarity=0.240 Sum_probs=137.1
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEccC
Q 002881 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-MDKVKVFEAH 98 (871)
Q Consensus 20 ~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~ 98 (871)
+.-.||..+.+|.-. ..++.|||+++...++.+...+ +|..=.|..+.. |+..+ +..|+-|++.. ..+.+.|..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheecc
Confidence 345788888777765 7899999999999888887544 577777765543 44443 45799999964 3566777655
Q ss_pred ----CCCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCceEEEEeecCCcceEEEEEe--cCCCCEEEEEECC-
Q 002881 99 ----TDYIRCVAVHPTLPYVLSSSD-------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN--PKDTNTFASASLD- 164 (871)
Q Consensus 99 ----~~~i~~i~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~d- 164 (871)
...|..-..+++.++++..+- .|.+.+|+.+.+ ..+.+.+|......+... +...+.|+.+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 346777788899998775432 478999999875 667788887655444432 1112355555543
Q ss_pred --CcEEEEECCCC---CCeE---EEe------cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCccc
Q 002881 165 --RTIKIWNLGSP---DPNF---TLD------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (871)
Q Consensus 165 --g~i~i~d~~~~---~~~~---~~~------~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 230 (871)
+.+.+.++... .+.+ ... ....-..++..++.-. ++..-+.-|.+.+||+.++.++..-+-...
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg--viyviTK~G~i~lyDleTgt~i~~nrIs~~ 301 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD--VVFLITKYGYIHLYDLETGTCIYMNRISGE 301 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC--EEEEEecCceEEEEecccceeeeeecccCC
Confidence 78999998543 1111 111 1122234666666544 788899999999999999999876553333
Q ss_pred C
Q 002881 231 N 231 (871)
Q Consensus 231 ~ 231 (871)
+
T Consensus 302 ~ 302 (494)
T 1bpo_A 302 T 302 (494)
T ss_dssp C
T ss_pred c
Confidence 3
No 296
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.05 E-value=0.00024 Score=83.03 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=112.8
Q ss_pred CEEEEEEe-CCCCEEEEEeC-C----CeEEEEECCCC-cEEE-EEccCCCCeEEEEEcCCCCEEEEEECC-----CeEEE
Q 002881 59 PVRSAKFV-ARKQWVVAGAD-D----MFIRVYNYNTM-DKVK-VFEAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKL 125 (871)
Q Consensus 59 ~v~~~~~~-~~~~~l~~~~~-d----g~i~iw~~~~~-~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i 125 (871)
.+....|| |||++|+.+.. + ..|+++|+.++ +.+. .+. .....+.|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99999886644 2 35999999988 6321 111 113468899999888877665 36888
Q ss_pred EECCCCceE-EEEee-cCCcceEEEEEecCCCCEEEEEEC---CCcEEEEECCCCC-Ce--EEEe-cCCCCeeEEEEeec
Q 002881 126 WDWEKGWMC-TQIFE-GHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLGSPD-PN--FTLD-AHQKGVNCVDYFTG 196 (871)
Q Consensus 126 wd~~~~~~~-~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~-~~~~~i~~i~~~~~ 196 (871)
+++.++... ..++. ........+.|+| ++++|+..+. ...|.++|+.++. .. ..+. ........+.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~- 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG- 329 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-
Confidence 888776321 23332 2334567889999 7777666553 3468888987753 22 3332 2233444444432
Q ss_pred CCcCEEEEEeCC----CeEEEEECCCCceEEE-ecCccc--CeEEEEEcCCCCEEEEEECCCc--EEEEeC
Q 002881 197 GDKPYLITGSDD----HTAKVWDYQTKSCVQT-LEGHTH--NVSAVCFHPELPIIITGSEDGT--VRIWHA 258 (871)
Q Consensus 197 ~~~~~l~~~~~d----g~i~v~d~~~~~~~~~-~~~~~~--~v~~i~~~p~~~~l~~~~~dg~--v~iwd~ 258 (871)
++. +++....+ ..|..+++.++..... +-.+.. .+..+.+.. +.++++...+|. |.++++
T Consensus 330 g~~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 330 TSH-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTE-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEEC
T ss_pred CCE-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEec
Confidence 443 34444332 3677788765322222 222322 345555553 345566667775 455564
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.04 E-value=0.0015 Score=70.46 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=122.2
Q ss_pred CEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCC
Q 002881 59 PVRSAKFVAR--KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-----LIKLWDWEKG 131 (871)
Q Consensus 59 ~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 131 (871)
....++|+|+ +..|+++...+.|+.++..++...... ........+++++++. |+++...+ .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4678999994 556666655589999998876655443 3455689999999999 55554422 2333333322
Q ss_pred ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEE-ec-CCCCeeEEEEeecCCcCEEEEEeCCC
Q 002881 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DA-HQKGVNCVDYFTGGDKPYLITGSDDH 209 (871)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~i~~i~~~~~~~~~~l~~~~~dg 209 (871)
......+. .-.....++++|.+++++++-..++.|..+|..++.....+ .. .......++++|+++. ++++-...+
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~-LYvad~~~~ 295 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW-AYIIYNGKH 295 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE-EEEEETTTT
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE-EEEEeCCCC
Confidence 21111221 12334667888855666666666788999998766542222 21 1222346999998863 444555678
Q ss_pred eEEEEECC--CCce--EEEecC---------------cccCeEEEEE---------cCCCCEEEEEECCCcEEEEeCCCC
Q 002881 210 TAKVWDYQ--TKSC--VQTLEG---------------HTHNVSAVCF---------HPELPIIITGSEDGTVRIWHATTY 261 (871)
Q Consensus 210 ~i~v~d~~--~~~~--~~~~~~---------------~~~~v~~i~~---------~p~~~~l~~~~~dg~v~iwd~~~~ 261 (871)
.|+.+++. ++.. ...+.+ .-.....+++ .+++.++++-...+.|+.++. +|
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99998865 2321 112211 1123667888 677777777777788999984 56
Q ss_pred eEE
Q 002881 262 RLE 264 (871)
Q Consensus 262 ~~~ 264 (871)
...
T Consensus 375 ~v~ 377 (433)
T 4hw6_A 375 RVT 377 (433)
T ss_dssp EEE
T ss_pred CEE
Confidence 443
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.04 E-value=0.018 Score=59.54 Aligned_cols=251 Identities=9% Similarity=0.101 Sum_probs=161.6
Q ss_pred CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEE
Q 002881 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVL 115 (871)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 115 (871)
+..|.|-|+.++..+..-... --+.-.+|..+.||.=. ..++.|+|+++..+++.+.-.. .|..=.|-.+ +.|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEE
Confidence 347889998876544322211 12455688888777665 6799999999999988887544 5666677654 3566
Q ss_pred EEECCCeEEEEECCCCceEEEEeecCC----cceEEEEEecCCCCEEEEEEC-------CCcEEEEECCCCCCeEEEecC
Q 002881 116 SSSDDMLIKLWDWEKGWMCTQIFEGHS----HYVMQVTFNPKDTNTFASASL-------DRTIKIWNLGSPDPNFTLDAH 184 (871)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~ 184 (871)
..+. ..|+-|++.....+.+.+..|. ..|..-..++ +.+.++..+- .|.+.+|+.+.. ..+.+++|
T Consensus 121 lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 121 LVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp EECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred EEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 6654 4899999987667778877763 4577777777 6666664432 467889998654 34566666
Q ss_pred CCCeeEEEEeecCCc-CEEEEEeC---CCeEEEEECCCC---ce-----EEEe-c---CcccCeEEEEEcCCCCEEEEEE
Q 002881 185 QKGVNCVDYFTGGDK-PYLITGSD---DHTAKVWDYQTK---SC-----VQTL-E---GHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 185 ~~~i~~i~~~~~~~~-~~l~~~~~---dg~i~v~d~~~~---~~-----~~~~-~---~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
......+....+... .+++.+.. .+++.+.++... .+ ...+ - ...+-..++..++....+..-+
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence 554433332211111 13333333 278999998532 11 1111 1 1123356788898888999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeE
Q 002881 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (871)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i 295 (871)
.-|.|++||+.++..+..-+...+.|...+......-++.-...|.+
T Consensus 278 K~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred cCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999988777776777665555554444444455544
No 299
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.88 E-value=9.9e-06 Score=85.13 Aligned_cols=116 Identities=12% Similarity=0.163 Sum_probs=55.8
Q ss_pred eeeccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHH-------------
Q 002881 648 LAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGIS------------- 714 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~------------- 714 (871)
++-++|+|+++.++.+.. +...|..+|+.+...|+++.|..+|.++.++.++..++...|+.+...
T Consensus 103 ~Y~Klg~l~e~e~f~~~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk 181 (449)
T 1b89_A 103 ALAKTNRLAELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 181 (449)
T ss_dssp ------CHHHHTTTTTCC-----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHcCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHH
Confidence 666778888877777542 335788888888888888888888887777777666666666644433
Q ss_pred HHHHHHHHcCCchHHHHHHHHcC----CHHHHHHHHHHCCCchHHH-HHHHhcCC
Q 002881 715 KLASLAKEQGKNNVAFLCLFMLG----KLEDCLQLLVESNRIPEAA-LMARSYLP 764 (871)
Q Consensus 715 ~l~~~~~~~~~~~~a~~~~~~~g----~~~~a~~l~~~~~~~~~A~-~la~~~~~ 764 (871)
.+...+...|++.+|..+.+.+. +..+++++|.+.|+|++|+ .|...++.
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 33333344444444433332221 1333447899999999997 44444433
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.0051 Score=66.28 Aligned_cols=240 Identities=10% Similarity=0.123 Sum_probs=135.9
Q ss_pred CEEEEEEcC-CCCEEEEEEc-CCeEEEEeCCCCceeEEeeec---CCCEEEEEE-------eCCCCEEEEEeCCC-----
Q 002881 17 RVKSVDLHP-SEPWILASLY-SGTVCIWNYQSQTMAKSFEVT---ELPVRSAKF-------VARKQWVVAGADDM----- 79 (871)
Q Consensus 17 ~v~~i~~s~-~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg----- 79 (871)
....|+|+| ++..|.++.. .+.|++.|..++......... ......++| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 578999999 3555555544 467999998877666544432 235899999 99999777776653
Q ss_pred --eEEEEECCC-CcEE-----EEEccCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECC-------CCce----------
Q 002881 80 --FIRVYNYNT-MDKV-----KVFEAHTDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWE-------KGWM---------- 133 (871)
Q Consensus 80 --~i~iw~~~~-~~~~-----~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~iwd~~-------~~~~---------- 133 (871)
.|.+++... +... ..+... .....++++|++..|+ +-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366665443 1221 122211 2345678899555555 55567889999987 4422
Q ss_pred -EEEEee-cCCcceEEEEEecCCCCE-EEEEECCCcEEEEECCCCCC----eEEEecC---C------------CCee-E
Q 002881 134 -CTQIFE-GHSHYVMQVTFNPKDTNT-FASASLDRTIKIWNLGSPDP----NFTLDAH---Q------------KGVN-C 190 (871)
Q Consensus 134 -~~~~~~-~~~~~v~~~~~~p~~~~~-l~~~~~dg~i~i~d~~~~~~----~~~~~~~---~------------~~i~-~ 190 (871)
....+. +.......++|+| +++. +++-+....|+.++...... ...+-+. . .... .
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred ccceeEecCCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 112221 2234467999999 6775 44445667888866543221 1222211 1 1123 2
Q ss_pred EEEeec-----CCcCEEEEEeCCCeEEEEECCCCceEEEecCc------------------------ccCeEEEEEcCC-
Q 002881 191 VDYFTG-----GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH------------------------THNVSAVCFHPE- 240 (871)
Q Consensus 191 i~~~~~-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------------------~~~v~~i~~~p~- 240 (871)
+..... ....++++-..++.|+.++. ++. +.++-+. -.....|+++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 333210 22225555566788888883 453 3344221 123566777775
Q ss_pred CCEEEEEECCCcEEEEeCCC
Q 002881 241 LPIIITGSEDGTVRIWHATT 260 (871)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~ 260 (871)
+.++++=+.+..|+.+++..
T Consensus 456 g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp TEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCC
Confidence 55555555556666666543
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.87 E-value=3.2e-05 Score=89.05 Aligned_cols=246 Identities=10% Similarity=-0.051 Sum_probs=144.6
Q ss_pred EEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCC----CcEEEEEccCCCCeE
Q 002881 29 WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNT----MDKVKVFEAHTDYIR 103 (871)
Q Consensus 29 ~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~----~~~~~~~~~~~~~i~ 103 (871)
+|+.+. .+.|++.++.+......+.. ...+..++|++.+..|+.+.. .+.|..+++.+ ......+........
T Consensus 379 ~ll~~~-~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~ 456 (699)
T 1n7d_A 379 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 456 (699)
T ss_dssp CBCCCC-TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred eEEecC-ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence 344433 45788888877655443332 345678999998887777654 57899999875 222222222222355
Q ss_pred EEEEcCCCCEEEEE-ECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-CcEEEEECCCCCCeEEE
Q 002881 104 CVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RTIKIWNLGSPDPNFTL 181 (871)
Q Consensus 104 ~i~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 181 (871)
.+++.+.+..|+.+ ...+.|.+.++... ...............++++|.++.++++-... +.|.++++.........
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSC-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCC-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 68887654444444 45678999998865 33333333334457788988445555443333 78888887654332222
Q ss_pred ecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002881 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (871)
Q Consensus 182 ~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~ 259 (871)
...-...+.++++|++.. ++++-+..+.|..+++........+. .......++++..+ .++++....+.|..++..
T Consensus 536 ~~~l~~PnGlavd~~~~~-LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGR-LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CSSCSSCCCEEECTTTCC-EEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred eCCCCCccEEEEeccCCE-EEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 222344578999987654 55566667899999986433222222 11223445666554 455555667889999988
Q ss_pred CCeEEEEEecCCccEEEEEE
Q 002881 260 TYRLENTLNYGLERVWAIGY 279 (871)
Q Consensus 260 ~~~~~~~~~~~~~~i~~i~~ 279 (871)
+++.+..+......++.+++
T Consensus 614 ~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 614 TGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp TEEEEECCCTTCSSCCCCCB
T ss_pred CCCceEEeecCCCCCcEEEE
Confidence 88877776554334444443
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.81 E-value=0.0088 Score=62.44 Aligned_cols=225 Identities=14% Similarity=0.088 Sum_probs=122.3
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeE--Eee---ecCCCEEEEEEeCC---CCEEEEEeC-C-----CeE
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK--SFE---VTELPVRSAKFVAR---KQWVVAGAD-D-----MFI 81 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~--~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i 81 (871)
.....++|.|+|. |+++...|.|.+++ +++... .+. ........++|+|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4578999999998 55666779999998 444221 111 12346889999998 566665543 2 678
Q ss_pred EEEECCCCc-----EE-EEEc---cCCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCC--------
Q 002881 82 RVYNYNTMD-----KV-KVFE---AHTDYIRCVAVHPTLPYVLSSSD-------------DMLIKLWDWEKG-------- 131 (871)
Q Consensus 82 ~iw~~~~~~-----~~-~~~~---~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~iwd~~~~-------- 131 (871)
..|+...+. .+ ..+. ........++|.|+|.+.++.+. .|.|.-++.+..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876432 11 1132 11123468999999965555332 156666665531
Q ss_pred ----ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc--------EEEEECCC----------------CCCeEEEec
Q 002881 132 ----WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT--------IKIWNLGS----------------PDPNFTLDA 183 (871)
Q Consensus 132 ----~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--------i~i~d~~~----------------~~~~~~~~~ 183 (871)
........++. ....++|+|.++.++++-..... |.+..... ..+...+.
T Consensus 188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 01111122333 25678899854555555433332 33332211 01222221
Q ss_pred CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce------EEEecCcccCeEEEEEcCCCCEEEEEE
Q 002881 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------VQTLEGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 184 ~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~~~~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
+......+++ ..+. ++++....+.|...++..... ...+-.....+..+++.|+|.+.++..
T Consensus 266 ~~~ap~G~~~-~~G~--l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAF-FRGD--LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEE-ETTE--EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcceEE-ECCE--EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2223455666 3343 555555567777777653321 112212235688899999987666553
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.80 E-value=0.14 Score=61.99 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=87.7
Q ss_pred eEEEEECCCCcEEEEEccC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC----
Q 002881 80 FIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD---- 154 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~---- 154 (871)
.|++.+.+.+..+..+... ...|...+.+. ++++.++ ++.+.++.++.+......-..-...|.|+++.|..
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~ 569 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNG 569 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTT
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcc
Confidence 3667776655566666543 34577777664 4677765 67888887765421111112235679999987632
Q ss_pred -CCEEEEEEC-CCcEEEEECCCCCCeEEEecC-CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC--CCce
Q 002881 155 -TNTFASASL-DRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKSC 221 (871)
Q Consensus 155 -~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~--~~~~ 221 (871)
..++++|.. |++++++++...+.+....-. .....++.+..-+..+++.+|-.||.+.-+.+. ++..
T Consensus 570 ~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l 641 (1158)
T 3ei3_A 570 LSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL 641 (1158)
T ss_dssp CCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE
T ss_pred cccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc
Confidence 478999997 999999999876655433221 224455555443445689999999998766553 4444
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.78 E-value=0.0073 Score=61.27 Aligned_cols=195 Identities=8% Similarity=0.131 Sum_probs=123.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCC----CC---EEEEEEC---CCeEEEEECC--CCceEE
Q 002881 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT----LP---YVLSSSD---DMLIKLWDWE--KGWMCT 135 (871)
Q Consensus 68 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~----~~---~l~~~~~---dg~i~iwd~~--~~~~~~ 135 (871)
...+++....++-+.+||+ +|+.+..+.. +.+..+..-|. |+ ++++... +++|.+|++. ++ .+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence 4466666677889999999 7888888763 56777777663 22 2233333 5789999774 33 222
Q ss_pred EEee-----cCC-cceEEEEE--ecCCCC-EEEEEECCCcEEEEECC---CC----CCeEEEecCCCCeeEEEEeecCCc
Q 002881 136 QIFE-----GHS-HYVMQVTF--NPKDTN-TFASASLDRTIKIWNLG---SP----DPNFTLDAHQKGVNCVDYFTGGDK 199 (871)
Q Consensus 136 ~~~~-----~~~-~~v~~~~~--~p~~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~i~~~~~~~~ 199 (871)
..-. ... ..+..+++ +|..+. ++++...+|.+..|++. .+ +.++++.. ...+-.+...+...
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g- 192 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG- 192 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT-
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC-
Confidence 2211 011 44666777 664443 68888889999999883 22 33455543 34566666665544
Q ss_pred CEEEEEeCCCeEEEEECC-----CCceEEEec-Cc-ccCeEEEEE--cCCCC-EEEEEE-CCCcEEEEeCC-CCeEEEEE
Q 002881 200 PYLITGSDDHTAKVWDYQ-----TKSCVQTLE-GH-THNVSAVCF--HPELP-IIITGS-EDGTVRIWHAT-TYRLENTL 267 (871)
Q Consensus 200 ~~l~~~~~dg~i~v~d~~-----~~~~~~~~~-~~-~~~v~~i~~--~p~~~-~l~~~~-~dg~v~iwd~~-~~~~~~~~ 267 (871)
.|+++-++.-|..++.. +++.+..+. ++ ...+..+++ .+++. +|++++ .++++.+||.. +.+.+..+
T Consensus 193 -~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 -RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp -EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred -eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 79999998778888854 344554442 22 246888887 45555 666666 56789999986 56666555
Q ss_pred ec
Q 002881 268 NY 269 (871)
Q Consensus 268 ~~ 269 (871)
..
T Consensus 272 ~I 273 (355)
T 3amr_A 272 RI 273 (355)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.71 E-value=0.19 Score=60.89 Aligned_cols=260 Identities=9% Similarity=0.057 Sum_probs=142.4
Q ss_pred cCCCCEEEEEEc---------CCeEEEEeCCCCceeEEeeec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 002881 24 HPSEPWILASLY---------SGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (871)
Q Consensus 24 s~~~~~la~~~~---------dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 93 (871)
..+.+.|+++.- ...|++.+...+..+..+... ...|...+.+ +.+++.++ .+.+.++.+++++...
T Consensus 470 ~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~ 546 (1158)
T 3ei3_A 470 VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQ 546 (1158)
T ss_dssp CSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEE
T ss_pred cCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceee
Confidence 334555666542 223666665555555555543 3356666644 34666665 6788888877654322
Q ss_pred EE-ccCCCCeEEEEEcCC------CCEEEEEEC-CCeEEEEECCCCceEEEEeecCCcceEEEEEec-CCCCEEEEEECC
Q 002881 94 VF-EAHTDYIRCVAVHPT------LPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASASLD 164 (871)
Q Consensus 94 ~~-~~~~~~i~~i~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d 164 (871)
.. ..-...|.|+++.|. ++++++|.. |++++|+++.+.......-.+......++.+.. .+..++.+|-.|
T Consensus 547 ~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d 626 (1158)
T 3ei3_A 547 ISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD 626 (1158)
T ss_dssp EEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred ecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC
Confidence 11 123567999999863 369999997 999999999875333222111122334444332 134678899999
Q ss_pred CcEEEEECC--CCCCeEE--EecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEE-EEEcC
Q 002881 165 RTIKIWNLG--SPDPNFT--LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA-VCFHP 239 (871)
Q Consensus 165 g~i~i~d~~--~~~~~~~--~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~-i~~~p 239 (871)
|.+..+.+. ++..... ..-...++.-..+...+.. .+++.+ ++...+|..+ ++...+ ......+.. ..|+.
T Consensus 627 G~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~-~V~a~s-~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~s 702 (1158)
T 3ei3_A 627 GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTT-NVFACS-DRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNS 702 (1158)
T ss_dssp SEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCE-EEEEES-SSCEEEEESS-SSEEEE-EBSSSCCCEEEEECC
T ss_pred CeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCce-eEEEEC-CCCEEEEEcC-CceEEe-ccChHHhceEeccCc
Confidence 998776654 3332211 1222345544444333332 334333 4444445433 332222 111223333 33533
Q ss_pred CC--CEEEEEECCCcEEEEeCCCCe--EEEEEecCCccEEEEEEeeCCCeEEEEEcC
Q 002881 240 EL--PIIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 240 ~~--~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~g~~d 292 (871)
.. .-++..+ ++.++|..+.+.+ .++.++.. ..+..++++|..+.+++++.+
T Consensus 703 e~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~-~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 703 DGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY-ESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp SSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECS-SEEEEEEEEGGGTEEEEEEEE
T ss_pred ccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCC-CCceEEEEcCCCCEEEEEEEe
Confidence 21 2344433 4569998775433 34455554 678999999999988876644
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.023 Score=61.15 Aligned_cols=200 Identities=13% Similarity=0.061 Sum_probs=119.2
Q ss_pred EEEEEEeC-CCCEEEEEeC-CCeEEEEECCCCcEEEEEccC---CCCeEEEEE-------cCCCCEEEEEECCC------
Q 002881 60 VRSAKFVA-RKQWVVAGAD-DMFIRVYNYNTMDKVKVFEAH---TDYIRCVAV-------HPTLPYVLSSSDDM------ 121 (871)
Q Consensus 60 v~~~~~~~-~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~---~~~i~~i~~-------~~~~~~l~~~~~dg------ 121 (871)
...|+|+| ++..|+++.. .+.|++.|.+++......... ......++| ++++.+|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 56899998 4555555544 467999998876665544322 235899999 99999777776654
Q ss_pred -eEEEEECCC--Cce--E-EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC-------CCCC-----------
Q 002881 122 -LIKLWDWEK--GWM--C-TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-------SPDP----------- 177 (871)
Q Consensus 122 -~i~iwd~~~--~~~--~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-------~~~~----------- 177 (871)
.|.+.+... ... . ...+.... ....++.+|.++.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665444 111 0 01222111 235678899666777777788899999987 4443
Q ss_pred eEE-Ee-cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECC--CCce--EEEecCc---------------ccCeE-EE
Q 002881 178 NFT-LD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKSC--VQTLEGH---------------THNVS-AV 235 (871)
Q Consensus 178 ~~~-~~-~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~--~~~~--~~~~~~~---------------~~~v~-~i 235 (871)
... +. ........++|+|+++. ++++-+..+.|+.++.. ++.. ..++-+. -.... .+
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~-lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKY-AYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSE-EEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCE-EEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 22 22334578999998872 34444567889886653 2321 1222111 01234 44
Q ss_pred EEc-------CCCCEEEEEECCCcEEEEeCCCCe
Q 002881 236 CFH-------PELPIIITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 236 ~~~-------p~~~~l~~~~~dg~v~iwd~~~~~ 262 (871)
... +++.++++-+.+..|+.++ .+|.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~ 411 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI 411 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence 554 4566666666677888887 4453
No 307
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.70 E-value=2.5e-05 Score=82.12 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=34.3
Q ss_pred ccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHH----------------------------
Q 002881 651 QLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLL---------------------------- 702 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~---------------------------- 702 (871)
.+|++++|.+++.+.+++..|..||+.+++.|+++.|+++|.++.|+.....
T Consensus 15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~ 94 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 94 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccc
Confidence 5677888888888888888888888888888888888888888777542222
Q ss_pred --------HHHhcCCHH------------HHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002881 703 --------LYSSLGDAE------------GISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (871)
Q Consensus 703 --------l~~~~~~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~ 762 (871)
+|...|+.+ -+..++......|++..|..+|.....+..-.+.+.+++++++|++.+++-
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 233333322 234566666778888888888888888888888889999999999888876
Q ss_pred C
Q 002881 763 L 763 (871)
Q Consensus 763 ~ 763 (871)
.
T Consensus 175 ~ 175 (449)
T 1b89_A 175 N 175 (449)
T ss_dssp T
T ss_pred C
Confidence 4
No 308
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.69 E-value=0.16 Score=59.38 Aligned_cols=445 Identities=10% Similarity=0.073 Sum_probs=228.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 94 (871)
...|.++.-.++| .|.+|+.+| +..||..+.............|.++.. .+| .|.+++.+ -|..++..+++....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3568998888776 467777665 789998776433211112335777654 344 57777766 578889877654332
Q ss_pred Ec----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe-ec----CCcceEEEEEecCCCCEEEEEECCC
Q 002881 95 FE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-EG----HSHYVMQVTFNPKDTNTFASASLDR 165 (871)
Q Consensus 95 ~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~----~~~~v~~~~~~p~~~~~l~~~~~dg 165 (871)
.. .....|.++...+++. |.+|+.+ -|..++..++ ...... .. ....|.++...+ +++.+..|+. +
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~ 211 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQ-IYVGTYN-GLCRYIPSNG-KFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-G 211 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCC-EEEEETT-EEEEEETTTT-EEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-E
T ss_pred ccCCCCcCCCeEEEEEEcCCCC-EEEEeCC-CHhhCccCCC-ceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-C
Confidence 11 1235688888887776 4456654 5778888766 322221 11 122478887776 4565666664 4
Q ss_pred cEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEec-------CcccCeEEEEEc
Q 002881 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------GHTHNVSAVCFH 238 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------~~~~~v~~i~~~ 238 (871)
-+..+|..+++...........|.++....++. |.+|+.+ -+.+++..++....... -....|.++...
T Consensus 212 Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D 287 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD---LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFAD 287 (758)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC---EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEEC
T ss_pred CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC---EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEc
Confidence 688888766542211111123466665544443 6667754 57888877654322111 123458889888
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEEe-------cCCccEEEEEEeeCCCeEEEEEcCCeEEEecCCC---------
Q 002881 239 PELPIIITGSEDGTVRIWHATTYRLENTLN-------YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE--------- 302 (871)
Q Consensus 239 p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~~--------- 302 (871)
++|. |-.|+..| +.++... ... ..+. .....|.++.-.++|. |-+|+.+|...+.....
T Consensus 288 ~~g~-lWiGT~~G-l~~~~~~-~~~-~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~~Gl~~~~~~~~~~~~~~~~~ 362 (758)
T 3ott_A 288 QEHN-IWLGTDYG-ISLSRYN-SAL-QFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGANGLIRFTDPAGERHDAIWYR 362 (758)
T ss_dssp TTCC-EEEEESSS-EEEECCC-C-C-EEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEETTEEEEESCTTSSCCCCEEEC
T ss_pred CCCC-EEEEeCCc-ccccccC-Cce-eEEecccCCCCCCCceEEEEEEcCCCC-EEEeeCCcceeecccccccceeEEec
Confidence 8876 44555556 5555432 211 1111 1124688887776666 44566677665532210
Q ss_pred ----------cceEEE--eCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeeecCc--cccCCceEEECCCCCEE
Q 002881 303 ----------EPVASM--DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGT--CDLYPQSLKHNPNGRFV 368 (871)
Q Consensus 303 ----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l 368 (871)
..+.++ +.++.+-......+..++. .+++........... ....+.++...++|++.
T Consensus 363 ~~~~~~~l~~~~v~~i~~d~~g~lWigt~~GL~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW 433 (758)
T 3ott_A 363 MGDKTYPLSHNRIRHIYEDKEQQLWIATDGSINRYDY---------ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLW 433 (758)
T ss_dssp TTCSSSCCSCSCEEEEEECTTSCEEEEETTEEEEEET---------TTTEEEEEEEECCC--CBSSSEEEEEECTTSEEE
T ss_pred cCCcCCCCCCCceEEEEECCCCCEEEEeCCcHhhcCc---------CCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEE
Confidence 112333 2233333333223333321 122221111111000 11234566667777766
Q ss_pred EEEcCCcEEEEEeecc-----c-----------c-cCcCceeEEEEecCCcEEE-EecCCeEEEeecccccceeeec---
Q 002881 369 VVCGDGEYIIYTALAW-----R-----------N-RSFGSALEFVWSSDGEYAV-RESSSKIKIFSKNFQEKRSVRP--- 427 (871)
Q Consensus 369 av~~~~~~~i~~~~~~-----~-----------~-~~~~~~~~~~~s~~~~~~~-~~~~~~i~i~~~~~~~~~~~~~--- 427 (871)
+....+.+..|+.... . . .....+.++...++|..-+ .++.+.|..++........+..
T Consensus 434 igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~ 513 (758)
T 3ott_A 434 ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADEL 513 (758)
T ss_dssp EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTS
T ss_pred EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCc
Confidence 5544667877764321 0 0 0112356676677777554 3444557777654332222211
Q ss_pred --Cccceeee---cCcEEEEEeCCeEEEEeccCCcEEEE----EE-cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 428 --TFSAERIY---GGTLLAMCSNDFICFYDWAECRLIRR----ID-VTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 428 --~~s~~~i~---~~~~La~~~~~~v~~~d~~~~~~~~~----~~-~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
...+..+. .|. |-+++.+.+..||..+++...- +. ..|.++.-. +|+ |-+++..+++.+.
T Consensus 514 ~~~~~~~~i~~d~~g~-lWigt~~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~Gl~~~~ 583 (758)
T 3ott_A 514 TGEKSPNYLLCDEDGL-LWVGFHGGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNGLWIID 583 (758)
T ss_dssp CGGGCEEEEEECTTSC-EEEEETTEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSCEEEEE
T ss_pred CCCcccceEEECCCCC-EEEEecCceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCCeEEEc
Confidence 11122222 233 3344556788888765542210 11 245666543 554 5555677877764
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.67 E-value=6e-05 Score=86.79 Aligned_cols=217 Identities=11% Similarity=0.020 Sum_probs=129.6
Q ss_pred CCEEEEEEcCCCCEEEEEEc-CCeEEEEeCCC----CceeEEeeecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCC
Q 002881 16 ERVKSVDLHPSEPWILASLY-SGTVCIWNYQS----QTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTM 89 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~-dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~ 89 (871)
..+..++|++.+..|+.+.. .+.|..+++.+ ......+...-..+..+++.+.+..|+.+ ...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 34678899998777776644 57899999875 22222221112235568888655555544 45688999998765
Q ss_pred cEEEEEccCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002881 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (871)
Q Consensus 90 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (871)
.....+.........++++|.+.+|+.+.. .+.|...++... ....+....-.....++|+|.++.++++-+..+.|
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 444444333345678999997666665543 267888877654 22222222233456899999556666666677889
Q ss_pred EEEECCCCCCeEEEec--CCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEE
Q 002881 168 KIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (871)
Q Consensus 168 ~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~ 236 (871)
.++++.+......+.. .......+++. ++. ++++....+.|..++..+++.+..+.......+.|.
T Consensus 565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd--~~~-lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDK-VFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEECSSSSCCEEECCCSSSCSSCCCCEEE--TTE-EEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EEEccCCCceEEEEecCCcCCCceEeEEE--CCE-EEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 9999875433322221 11223344443 332 566666678899999887877766654333333443
No 310
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.63 E-value=0.021 Score=58.00 Aligned_cols=193 Identities=10% Similarity=0.161 Sum_probs=120.8
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCC----CC---EEEEEeC---CCeEEEEECC--CCcEEEE
Q 002881 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR----KQ---WVVAGAD---DMFIRVYNYN--TMDKVKV 94 (871)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~iw~~~--~~~~~~~ 94 (871)
..+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ |+ ++++... +++|.+|+++ ++ .+..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence 345666667888999998 8888887753 56777777663 22 2333333 5799999774 33 3444
Q ss_pred Ecc------CC-CCeEEEEE--cCC-CC-EEEEEECCCeEEEEECC---CC---ceEEEEeecCCcceEEEEEecCCCCE
Q 002881 95 FEA------HT-DYIRCVAV--HPT-LP-YVLSSSDDMLIKLWDWE---KG---WMCTQIFEGHSHYVMQVTFNPKDTNT 157 (871)
Q Consensus 95 ~~~------~~-~~i~~i~~--~~~-~~-~l~~~~~dg~i~iwd~~---~~---~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (871)
+.. .. ..+..+++ +|. +. ++++...+|.+..|++. .+ .+..+.+.. .+.+..|...+ ....
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd-~~g~ 193 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADD-EYGR 193 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEET-TTTE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcC-CCCe
Confidence 421 11 45666777 774 43 68888889999999883 22 123334433 35678888888 7789
Q ss_pred EEEEECCCcEEEEECCCC-----CCeEEEe-c-CCCCeeEEEEeecCCcC-EEEEEe-CCCeEEEEECC-CCceEEEe
Q 002881 158 FASASLDRTIKIWNLGSP-----DPNFTLD-A-HQKGVNCVDYFTGGDKP-YLITGS-DDHTAKVWDYQ-TKSCVQTL 225 (871)
Q Consensus 158 l~~~~~dg~i~i~d~~~~-----~~~~~~~-~-~~~~i~~i~~~~~~~~~-~l~~~~-~dg~i~v~d~~-~~~~~~~~ 225 (871)
|+.+-++.-|..++.+.. +.+..+. + ....+..+++.+..++. +|++++ .++.+.+||.. +.+.+..+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 999999877777775422 2222221 1 12357778876443222 566665 56799999986 44444444
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.62 E-value=0.028 Score=56.49 Aligned_cols=155 Identities=10% Similarity=0.038 Sum_probs=108.7
Q ss_pred EEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCceeEEeeec-------CCCEEEEEE---eCCCCEEEEEeC---------
Q 002881 18 VKSVDLHPSEPWILASL-YSGTVCIWNYQSQTMAKSFEVT-------ELPVRSAKF---VARKQWVVAGAD--------- 77 (871)
Q Consensus 18 v~~i~~s~~~~~la~~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~~--------- 77 (871)
.-+++|++....+.+++ .+|+|..|+...+......-.. ...+..+.| .|++..+++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 44789998766677666 6999999998766544331111 113689999 688777765442
Q ss_pred ----CCeEEEEECC---CCcEEEEEc--c-----------CCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCceEEE
Q 002881 78 ----DMFIRVYNYN---TMDKVKVFE--A-----------HTDYIRCVAVHPTLPYVLSSSDD-MLIKLWDWEKGWMCTQ 136 (871)
Q Consensus 78 ----dg~i~iw~~~---~~~~~~~~~--~-----------~~~~i~~i~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~ 136 (871)
+..|..||+. +++.+.... . -......++..++|+..++++.. +.|...+.+.. ....
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 6789999999 787765553 1 11247899999999999989888 88888887654 2222
Q ss_pred EeecC-----CcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002881 137 IFEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (871)
Q Consensus 137 ~~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (871)
..... ......++++| +++.|++....|.+..+|+..
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred eeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 22111 12356899999 778888877799999999974
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.58 E-value=0.021 Score=59.58 Aligned_cols=225 Identities=10% Similarity=0.042 Sum_probs=120.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--EEc---cCCCCeEEEEEcCC---CCEEEEEECC------CeE
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK--VFE---AHTDYIRCVAVHPT---LPYVLSSSDD------MLI 123 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~---~~~~~i~~i~~~~~---~~~l~~~~~d------g~i 123 (871)
.....++|.|+|. ++++..+|.|.+++ +++... .+. ........++|+|+ +..|+++... +.|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567999999998 45556679999998 444221 111 12346889999998 5566655442 578
Q ss_pred EEEECCCCc-----eEEEEee---cCCcceEEEEEecCCCCEEEEEEC-------------CCcEEEEECCCC-------
Q 002881 124 KLWDWEKGW-----MCTQIFE---GHSHYVMQVTFNPKDTNTFASASL-------------DRTIKIWNLGSP------- 175 (871)
Q Consensus 124 ~iwd~~~~~-----~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~------- 175 (871)
..++...+. .+...+. ...+....++|.| ++.+.++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 888876431 1111122 1122346899999 6665555332 256666666431
Q ss_pred -----CCeEEEecCCCCeeEEEEee-cCCcCEEEEEeCCCe--------EEEEECCC----------------CceEEEe
Q 002881 176 -----DPNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHT--------AKVWDYQT----------------KSCVQTL 225 (871)
Q Consensus 176 -----~~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~~~dg~--------i~v~d~~~----------------~~~~~~~ 225 (871)
.....+...-.....++|+| .+. ++++-...+. |.+..... ..++..+
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~--l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGE--LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCC--EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCC--EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 01111111123346678888 443 3333322222 33332111 0122223
Q ss_pred cCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe----E--EEEEecCCccEEEEEEeeCCCeEEEEE
Q 002881 226 EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR----L--ENTLNYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 226 ~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~----~--~~~~~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
. +......++| .+|.++++....+.|...++.... . ...+-....++..+++.|||...++..
T Consensus 265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2 2234566777 456565555556677777654322 1 122212346788999999987666543
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.56 E-value=0.041 Score=55.33 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=127.2
Q ss_pred eeecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEEEccC-----C--CCeEEEEE---cCCCCEEEEEE---
Q 002881 53 FEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVKVFEAH-----T--DYIRCVAV---HPTLPYVLSSS--- 118 (871)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~-----~--~~i~~i~~---~~~~~~l~~~~--- 118 (871)
+........+++|.+....+..++ ..+.|..|+...+......-.. . ..+..+.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 334455567899999777777777 6899999998766544332211 1 13578999 68876666443
Q ss_pred ----------CCCeEEEEECC---CCceEEEEe-ec-----------CCcceEEEEEecCCCCEEEEEECC-CcEEEEEC
Q 002881 119 ----------DDMLIKLWDWE---KGWMCTQIF-EG-----------HSHYVMQVTFNPKDTNTFASASLD-RTIKIWNL 172 (871)
Q Consensus 119 ----------~dg~i~iwd~~---~~~~~~~~~-~~-----------~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~ 172 (871)
.+..|..+|+. ++......- .. .......++..+ +++..++++.. +.|...+.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeC
Confidence 26789999998 553333221 11 112478899999 78888888888 88888877
Q ss_pred CCCCCeEEEe------cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-EEEec--Cc---ccCeEEE-EEcC
Q 002881 173 GSPDPNFTLD------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLE--GH---THNVSAV-CFHP 239 (871)
Q Consensus 173 ~~~~~~~~~~------~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~--~~---~~~v~~i-~~~p 239 (871)
... ....+. ......+.|+++|++. .|++....|.+..+|+.+... ..... +. ......+ ..-.
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~--~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSN--KLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTT--EEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCC--EEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 554 333221 1123467999999987 577776699999999884322 01111 21 1223343 3334
Q ss_pred CCCE-EEEEECCCcEEEEeCCCCe
Q 002881 240 ELPI-IITGSEDGTVRIWHATTYR 262 (871)
Q Consensus 240 ~~~~-l~~~~~dg~v~iwd~~~~~ 262 (871)
+|+. +++.+..+.+.+.+...++
T Consensus 244 ~G~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp TTEEEEEEEETTEEEEEECSSTTS
T ss_pred CCEEEEEEcCCCCEEEEECCCCcc
Confidence 6666 4444455556665544433
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.56 E-value=0.032 Score=58.06 Aligned_cols=230 Identities=15% Similarity=0.077 Sum_probs=126.5
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCc-eeEEee---ecCCCEEEEEEeCC---CCEEEEEeC----C----Ce
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-MAKSFE---VTELPVRSAKFVAR---KQWVVAGAD----D----MF 80 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g~ 80 (871)
.....|+|.|+|+ |+++..+|.|.+++ .+++ .+..+. ........++++|+ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578999999997 66666789999997 4554 222211 12346889999998 556665543 3 57
Q ss_pred EEEEECCCC--c---E--E-EEEc-cCCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCc------
Q 002881 81 IRVYNYNTM--D---K--V-KVFE-AHTDYIRCVAVHPTLPYVLSSSD-------------DMLIKLWDWEKGW------ 132 (871)
Q Consensus 81 i~iw~~~~~--~---~--~-~~~~-~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~------ 132 (871)
|..|+.... . . + ..+. ........++|.|+|.+.++.+. .|.|.-++.+..-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 778877654 1 1 1 1122 11123467999999976655432 2456666654320
Q ss_pred -eEEEEeecCCcceEEEEEecCCCCEEEEEECCC---cEEEEECCC----------------CCCeEEEecCCCCeeEEE
Q 002881 133 -MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR---TIKIWNLGS----------------PDPNFTLDAHQKGVNCVD 192 (871)
Q Consensus 133 -~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~----------------~~~~~~~~~~~~~i~~i~ 192 (871)
.......++.. ...++|+|.++.++++-.... .|.+..... ..+...+.........+.
T Consensus 187 ~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 187 PNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp TTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 01112223433 467899984455444432221 243332211 012223211233456777
Q ss_pred Eeec-----CCcCEEEEEeCCCeEEEEECCCC-ceE--EEe-cCcccCeEEEEEcCCCCEEEEEE
Q 002881 193 YFTG-----GDKPYLITGSDDHTAKVWDYQTK-SCV--QTL-EGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 193 ~~~~-----~~~~~l~~~~~dg~i~v~d~~~~-~~~--~~~-~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
+... -++.++++....+.|...++... ... ..+ .+....+..+++.|+|.+.++..
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 7421 12235666666778888888743 221 222 22245688999999987666553
No 315
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.54 E-value=0.0054 Score=72.97 Aligned_cols=271 Identities=10% Similarity=0.106 Sum_probs=156.1
Q ss_pred CChhhhhhhcccCCCCEEEEEEcC----CCCEEEEEE---cCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEE
Q 002881 2 PLRLEIKRKLAQRSERVKSVDLHP----SEPWILASL---YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA 74 (871)
Q Consensus 2 ~~~~~~~~~~~~h~~~v~~i~~s~----~~~~la~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 74 (871)
|..+.-.-.++.-+-.-.++.|.. ..+++.+-- ....|.|-|+.++..+..-. -.--+.-.+|..+.||.
T Consensus 6 pi~~~e~~~L~~lGi~~~~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiAL 82 (1630)
T 1xi4_A 6 PIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIAL 82 (1630)
T ss_pred CeehhhhhhhhhcCCCcccccccceeeecCceEEEEecCCCCceEEEEECCCCCCccccc---ccchhhccCCCcceEEE
Confidence 444444444443333344455543 234444422 23478888888765432211 11223445788877776
Q ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecC----CcceEEEEE
Q 002881 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH----SHYVMQVTF 150 (871)
Q Consensus 75 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~ 150 (871)
=. ..++.|+|+++..+++.+.- ..+|..=.|-... .|+..+. ..|.-|++.+...+...+..| ...|..-..
T Consensus 83 ra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~ 158 (1630)
T 1xi4_A 83 KA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT 158 (1630)
T ss_pred ec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeee
Confidence 54 67999999999888877764 3456666776543 4555554 479999998655566666655 445666667
Q ss_pred ecCCCCEEEEEE-------CCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcC-EEEEEe---CCCeEEEEECCCC
Q 002881 151 NPKDTNTFASAS-------LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP-YLITGS---DDHTAKVWDYQTK 219 (871)
Q Consensus 151 ~p~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-~l~~~~---~dg~i~v~d~~~~ 219 (871)
++ +.+.++..+ -.|.+.+|+.+.+. .+.+.+|......+......... +++.+. ..+.+.|.++...
T Consensus 159 d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 159 DA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (1630)
T ss_pred CC-CCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence 77 566655433 34788888876542 23344454433333322111111 222221 1368888888542
Q ss_pred ---ceEE------EecC---cccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEee
Q 002881 220 ---SCVQ------TLEG---HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (871)
Q Consensus 220 ---~~~~------~~~~---~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 281 (871)
.+.. .+-. ..+-..++..++....+...+.-|.+++||+.|+..+..-+....+|...+..+
T Consensus 237 ~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~ 310 (1630)
T 1xi4_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE 310 (1630)
T ss_pred ccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCC
Confidence 1111 0111 122245677788777888889999999999999987765555555555544443
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.48 E-value=0.0051 Score=62.79 Aligned_cols=226 Identities=10% Similarity=0.054 Sum_probs=114.1
Q ss_pred CCCEEEEEE-cC-----CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCc---E
Q 002881 26 SEPWILASL-YS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD-----MFIRVYNYNTMD---K 91 (871)
Q Consensus 26 ~~~~la~~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~---~ 91 (871)
++..++.|+ .+ ..+.+||..+++....-..............++..++.|+.+ ..+.+||..+.+ .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 445566666 32 468999988876443221111111112223356777777754 468999988766 3
Q ss_pred EEEE--ccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCceEEEEeec-CCcceEEEEEecCCCCEEEEEEC
Q 002881 92 VKVF--EAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTFASASL 163 (871)
Q Consensus 92 ~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~ 163 (871)
...- .........+.+ ++..++.|+.+ ..+.+||+.+. .....-.. ....-.++... ++.+++.|+.
T Consensus 94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 168 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID-QWSMLGDMQTAREGAGLVVA--SGVIYCLGGY 168 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT-EEEEEEECSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC-eEEECCCCCCCcccceEEEE--CCEEEEECCC
Confidence 3321 111112222222 56666666643 36889998876 22222111 11111122222 4667777765
Q ss_pred C-----CcEEEEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEEEeCC-----CeEEEEECCCCceEEEe--cCcc
Q 002881 164 D-----RTIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQTKSCVQTL--EGHT 229 (871)
Q Consensus 164 d-----g~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~--~~~~ 229 (871)
+ ..+.+||+.+.+-... .....+ -.++.. .++. +++.|+.+ ..+.+||+.+.+-...- ....
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~-~~~~--i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVAL-LNDH--IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE-ETTE--EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEE-ECCE--EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 4 4588899876543221 111111 112222 2332 66666653 46899999876543221 1111
Q ss_pred cCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCe
Q 002881 230 HNVSAVCFHPELPIIITGSED-----GTVRIWHATTYR 262 (871)
Q Consensus 230 ~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~ 262 (871)
.....+.+ ++.+++.|+.+ ..+.+||..+.+
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11222222 55677777755 357778876654
No 317
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0018 Score=58.19 Aligned_cols=134 Identities=10% Similarity=0.038 Sum_probs=81.9
Q ss_pred hhHhHHHHHHccCHHHHhhhCCCCCcchh-HHHHHHHHhCCChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCChH
Q 002881 591 SLIEYKTLVMRGDLERANEILPSIPKEHH-NSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSES 669 (871)
Q Consensus 591 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~~~ 669 (871)
...+|..++.-|+++.|..+...+..+.. ..+....-..|..+.|..+ +-.+++++...=++....+..
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~c----------y~~~~D~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMI----------YQTQHSFDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHH----------HHHTTCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHH----------HHHhCCHHHHHHHHHHhCCHH
Confidence 34578999999999998766544433333 2222222223333333211 123333333333333344566
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHC
Q 002881 670 KWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 670 ~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
..+.+|+.|...|++..|..||--.||+ .+..++....|+..+|..++.-.|..+.|.++..+.
T Consensus 78 ~L~kla~iA~~~g~~n~af~~~l~lGdv----------------~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTREDFGSMLLNTFYNNST----------------KERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCH----------------HHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCccHHHHHHHHHHcCCH----------------HHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHHHHh
Confidence 7789999999999999999955444444 444456666666777777777777778888777666
Q ss_pred C
Q 002881 750 N 750 (871)
Q Consensus 750 ~ 750 (871)
+
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 5
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.45 E-value=0.099 Score=54.33 Aligned_cols=226 Identities=10% Similarity=0.018 Sum_probs=125.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEc---cCCCCeEEEEEcCC---CCEEEEEEC----C----Ce
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-KVKVFE---AHTDYIRCVAVHPT---LPYVLSSSD----D----ML 122 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~---~~~~~i~~i~~~~~---~~~l~~~~~----d----g~ 122 (871)
.....++|.|+|. |+++..+|.|.+++ .+++ .+..+. ........|+++|+ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578999999997 55556679999997 4454 222211 12346889999997 556665543 2 57
Q ss_pred EEEEECCCC------ce-EEEEee-cCCcceEEEEEecCCCCEEEEEEC-------------CCcEEEEECCCCC-----
Q 002881 123 IKLWDWEKG------WM-CTQIFE-GHSHYVMQVTFNPKDTNTFASASL-------------DRTIKIWNLGSPD----- 176 (871)
Q Consensus 123 i~iwd~~~~------~~-~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~~----- 176 (871)
|..|+.... .. +...+. ...+....+.|.| ++.++++.+. .|.|.-++....-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 788877643 11 111122 1122346799999 6666655332 2466666654320
Q ss_pred --CeEEE-ecCCCCeeEEEEee-cCCcCEEEEEeCC-C---eEEEEECCC----------------CceEEEecCcccCe
Q 002881 177 --PNFTL-DAHQKGVNCVDYFT-GGDKPYLITGSDD-H---TAKVWDYQT----------------KSCVQTLEGHTHNV 232 (871)
Q Consensus 177 --~~~~~-~~~~~~i~~i~~~~-~~~~~~l~~~~~d-g---~i~v~d~~~----------------~~~~~~~~~~~~~v 232 (871)
....+ .++ .....++|.| .+. |.++... + .|.+..... ..++..+.......
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~---l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGV---MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCC---EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCC---EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 01112 222 3346788888 444 3333322 1 233332110 01223331123457
Q ss_pred EEEEEc-------CCCCEEEEEECCCcEEEEeCCCC-eEE--EEE-ecCCccEEEEEEeeCCCeEEEEE
Q 002881 233 SAVCFH-------PELPIIITGSEDGTVRIWHATTY-RLE--NTL-NYGLERVWAIGYMKSSRRIVIGY 290 (871)
Q Consensus 233 ~~i~~~-------p~~~~l~~~~~dg~v~iwd~~~~-~~~--~~~-~~~~~~i~~i~~~~~~~~l~~g~ 290 (871)
..+.|. .+|.++++....+.|...++... +.. ..+ .....++..+++.|||.+.++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 788883 46666666666678888887743 322 222 22246789999999997655543
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.38 E-value=0.026 Score=57.57 Aligned_cols=223 Identities=8% Similarity=0.008 Sum_probs=114.0
Q ss_pred EEEEEEc--CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCcEEEEEccC--CC
Q 002881 29 WILASLY--SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----MFIRVYNYNTMDKVKVFEAH--TD 100 (871)
Q Consensus 29 ~la~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~--~~ 100 (871)
.++.|+. ...+.+||..+++....-.............-++..++.|+.+ ..+.+||..+.+....-... ..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4555654 3579999988876543221111111111122366677777754 67889999887654332211 11
Q ss_pred CeEEEEEcCCCCEEEEEECC------CeEEEEECCCCceEEEEeecC-CcceEEEEEecCCCCEEEEEEC---------C
Q 002881 101 YIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQIFEGH-SHYVMQVTFNPKDTNTFASASL---------D 164 (871)
Q Consensus 101 ~i~~i~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~---------d 164 (871)
....+.+ ++..++.|+.+ ..+.+||..+. .....-... ...-.++... ++.+++.|+. -
T Consensus 94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE-SWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-ceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence 1222222 56666777654 46899999876 332221111 1111122222 4566666653 3
Q ss_pred CcEEEEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEEEeCC-----CeEEEEECCCCceEEE--ecCcccCeEEE
Q 002881 165 RTIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQTKSCVQT--LEGHTHNVSAV 235 (871)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~i 235 (871)
..+.+||+.+.+-.. +.....+ -.++... ++. +++.|+.+ ..+.+||+.+.+-... +.........+
T Consensus 169 ~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~-~~~--i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 169 NSCEVYDPATETWTE-LCPMIEARKNHGLVFV-KDK--IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE-TTE--EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred ceEEEeCCCCCeEEE-CCCccchhhcceEEEE-CCE--EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 458899987764222 2111111 1122222 332 56666543 4688999887643221 11111222333
Q ss_pred EEcCCCCEEEEEECC-----CcEEEEeCCCCe
Q 002881 236 CFHPELPIIITGSED-----GTVRIWHATTYR 262 (871)
Q Consensus 236 ~~~p~~~~l~~~~~d-----g~v~iwd~~~~~ 262 (871)
.+ ++.+++.|+.+ ..+.+||..+.+
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 33 56677888754 468888887755
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.36 E-value=0.073 Score=55.37 Aligned_cols=228 Identities=9% Similarity=0.077 Sum_probs=123.5
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee-------ecCCCEEEEEEeCC---CCEEEEEeC--------
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-------VTELPVRSAKFVAR---KQWVVAGAD-------- 77 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~l~~~~~-------- 77 (871)
.....|+|.|+|++|+++...|.|++++. .+.....+. ........++|+|+ +.+|.++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 45789999999984556667899999984 343221111 12345789999996 556655532
Q ss_pred CCeEEEEECCCC--c--EEE-EEcc------CCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCc-
Q 002881 78 DMFIRVYNYNTM--D--KVK-VFEA------HTDYIRCVAVHPTLPYVLSSSD-------------DMLIKLWDWEKGW- 132 (871)
Q Consensus 78 dg~i~iw~~~~~--~--~~~-~~~~------~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~- 132 (871)
...|..|++... . ... .+.. .......++|.|+|.+.++.+. .|.|.-++.+..-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766533 1 111 1111 1112457999999954444333 2467777765420
Q ss_pred -----------eEEEEeecCCcceEEEEEecCCCCEEEEEECCC--cEEEEECCCC------------------------
Q 002881 133 -----------MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR--TIKIWNLGSP------------------------ 175 (871)
Q Consensus 133 -----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~------------------------ 175 (871)
.....-.++. ....++|+|..+ .|.++.... .=.|.-+..+
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSN-ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTT-EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEEEcCc-CccceEEECCCC-CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 1111222343 367899998434 444443321 1112111111
Q ss_pred -------CCeEEEecCCCCeeEEEEeecC-----CcCEEEEEeCCCeEEEEECCCCceEEE---ecCcccCeEEEEEcCC
Q 002881 176 -------DPNFTLDAHQKGVNCVDYFTGG-----DKPYLITGSDDHTAKVWDYQTKSCVQT---LEGHTHNVSAVCFHPE 240 (871)
Q Consensus 176 -------~~~~~~~~~~~~i~~i~~~~~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~v~~i~~~p~ 240 (871)
.+...+.. ...+..+.+.... ++.++++....+.|...++..++.... +......+..+++.|+
T Consensus 255 ~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 11222222 2345667776432 233666666778888888775543322 2222347899999999
Q ss_pred CCEEEEE
Q 002881 241 LPIIITG 247 (871)
Q Consensus 241 ~~~l~~~ 247 (871)
|.+.++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9865543
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.35 E-value=0.012 Score=59.96 Aligned_cols=224 Identities=11% Similarity=0.116 Sum_probs=112.0
Q ss_pred CCEEEEEEcC----CeEEEEeCCCCceeEEeeecCCCE-EEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEc
Q 002881 27 EPWILASLYS----GTVCIWNYQSQTMAKSFEVTELPV-RSAKFVARKQWVVAGADD-----MFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 27 ~~~la~~~~d----g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~ 96 (871)
+..++.|+.+ ..+..||..+++....-....... .+++ .-++..++.|+.+ ..+.+||..+.+....-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 3455556543 468899988876443211111111 1222 2266677777654 358899988765443322
Q ss_pred --cCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCceEEEEee-cCCcceEEEEEecCCCCEEEEEECC----
Q 002881 97 --AHTDYIRCVAVHPTLPYVLSSSDDM-----LIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLD---- 164 (871)
Q Consensus 97 --~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d---- 164 (871)
..........+ ++..++.|+.++ .+.+||+.+. .....-. .....-.+++.. ++.+++.|+.+
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN-EWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR 169 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-eEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence 11111222222 566677777553 5788998876 3322211 111111122222 45677766543
Q ss_pred ---CcEEEEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEEEeCC-----CeEEEEECCCCceEEEe--cCcccCe
Q 002881 165 ---RTIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQTKSCVQTL--EGHTHNV 232 (871)
Q Consensus 165 ---g~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~--~~~~~~v 232 (871)
..+.+||+.+.+-... .....+ -.++... ++. +++.|+.+ ..+.+||+.+.+-...- .......
T Consensus 170 ~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~-~~~--iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYI-AEMSTRRSGAGVGVL-NNL--LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp EECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE-TTE--EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred ccccEEEEEeCCCCcEEEC-CCCccccccccEEEE-CCE--EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 3588899876542221 111111 1122222 332 66666654 46889998876533221 1111111
Q ss_pred EEEEEcCCCCEEEEEECCC-----cEEEEeCCCCe
Q 002881 233 SAVCFHPELPIIITGSEDG-----TVRIWHATTYR 262 (871)
Q Consensus 233 ~~i~~~p~~~~l~~~~~dg-----~v~iwd~~~~~ 262 (871)
..+.+ ++.+++.|+.++ .+.+||..+.+
T Consensus 246 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 246 GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 22222 566777777553 47888877654
No 322
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.34 E-value=0.42 Score=55.73 Aligned_cols=444 Identities=12% Similarity=0.101 Sum_probs=230.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEee----ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE----VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 90 (871)
...|.+|.-.++|. |-.|..+| +..||-.. .+.+. .....|.++.-..+| .|.+|+.+| +..||..+.+
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~ 93 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADR 93 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCE
Confidence 45799999998885 66667777 55676322 12221 123468888877766 577777766 7889988764
Q ss_pred EEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEee----cCCcceEEEEEecCCCCEEEEEECCCc
Q 002881 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE----GHSHYVMQVTFNPKDTNTFASASLDRT 166 (871)
Q Consensus 91 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (871)
...........|.++... ++ .|.+++.+ .|..+|..++ ....... .....|.++...+ ++. +..++.+ -
T Consensus 94 f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-G 166 (758)
T 3ott_A 94 YEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSR-KLTSFDTRRNGLPNNTIYSIIRTK-DNQ-IYVGTYN-G 166 (758)
T ss_dssp ECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTC-CEEEECHHHHCCSCSCEEEEEECT-TCC-EEEEETT-E
T ss_pred EECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCC-eEEEeccCCCCcCCCeEEEEEEcC-CCC-EEEEeCC-C
Confidence 432111123357777543 44 67777776 6888998765 3332211 1134577877765 444 4456654 4
Q ss_pred EEEEECCCCCCeEEEecC------CCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 002881 167 IKIWNLGSPDPNFTLDAH------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 167 i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~ 240 (871)
+..++..+.+.. .+... ...|.++...+.+. .|.+|+. +-+..+|..+++...........|.++...++
T Consensus 167 l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~--~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~ 242 (758)
T 3ott_A 167 LCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQ--CVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGN 242 (758)
T ss_dssp EEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTT--EEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTT
T ss_pred HhhCccCCCceE-EecCCCccccccceeEEEEEECCCC--EEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCC
Confidence 777887654321 22111 12366665544443 4566664 45888998766532221112345888888888
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEEe-------cCCccEEEEEEeeCCCeEEEEEcCCeEEEecCC------------
Q 002881 241 LPIIITGSEDGTVRIWHATTYRLENTLN-------YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR------------ 301 (871)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~~~~------------ 301 (871)
|.+.+ |+. +-+.+++..+++...... .....|+++...++|. |-+|+..|........
T Consensus 243 g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~Gl~~~~~~~~~~~~~~~~~~~ 319 (758)
T 3ott_A 243 GDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYGISLSRYNSALQFIPISQITG 319 (758)
T ss_dssp CCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSSEEEECCCC-CEEEEHHHHSC
T ss_pred CCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCcccccccCCceeEEecccCCC
Confidence 76544 454 458888877665433221 1234588888776665 5567777743321111
Q ss_pred ---CcceEEE--eCCCcEEEEeecceEEEEEeecCcceeccCCCeeeeeeee-----cCccccCCceEEECCCCCEEEEE
Q 002881 302 ---EEPVASM--DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKE-----LGTCDLYPQSLKHNPNGRFVVVC 371 (871)
Q Consensus 302 ---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~g~~lav~ 371 (871)
...+.++ +.+|.+-......+ +.+.. ..+......... ..-....+.++.-..+|++-+..
T Consensus 320 ~~~~~~v~~i~~D~~g~lWiGt~~Gl--~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt 390 (758)
T 3ott_A 320 TGDGNQFYSLFRDSKGFYWFGGANGL--IRFTD-------PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT 390 (758)
T ss_dssp SCCCCBEEEEEECTTCCEEEEETTEE--EEESC-------TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE
T ss_pred CCCCceEEEEEEcCCCCEEEeeCCcc--eeecc-------cccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe
Confidence 0112222 22333322222222 11111 111000000000 00111234566677777765544
Q ss_pred cCCcEEEEEeeccccc-----------CcCceeEEEEecCCcEEEEecCCeEEEeecccc-----c-c---eeee--cCc
Q 002881 372 GDGEYIIYTALAWRNR-----------SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQ-----E-K---RSVR--PTF 429 (871)
Q Consensus 372 ~~~~~~i~~~~~~~~~-----------~~~~~~~~~~s~~~~~~~~~~~~~i~i~~~~~~-----~-~---~~~~--~~~ 429 (871)
++.+..|+....+-. ....+.++.-..+|..-+....+.|.+++.... . . .... ...
T Consensus 391 -~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 391 -DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp -TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred -CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 567777754322100 112355665556666555554556777764310 0 0 0000 011
Q ss_pred cce---eee---cCcEEE-EEeCCeEEEEeccCCcEEEEE------EcceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002881 430 SAE---RIY---GGTLLA-MCSNDFICFYDWAECRLIRRI------DVTVKNLYWADSGDLVAIASDTSFYILK 490 (871)
Q Consensus 430 s~~---~i~---~~~~La-~~~~~~v~~~d~~~~~~~~~~------~~~i~~i~~s~~~~~la~~~~~~~~~l~ 490 (871)
... .|. .|.+-+ .++.+.|..||..+++..... ...+.++....+|...+. +..+++.+.
T Consensus 470 ~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~Gl~~~~ 542 (758)
T 3ott_A 470 SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGGVMRIN 542 (758)
T ss_dssp SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTEEEEEC
T ss_pred ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCceEEEe
Confidence 111 111 244433 244457888898776544321 124677888888887754 456766653
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.02 E-value=0.024 Score=57.66 Aligned_cols=215 Identities=12% Similarity=0.110 Sum_probs=104.0
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCcEEEEE--ccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCc--
Q 002881 68 RKQWVVAGA-DD-----MFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGW-- 132 (871)
Q Consensus 68 ~~~~l~~~~-~d-----g~i~iw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-- 132 (871)
++..++.|+ .+ ..+.+||..+.+....- .........+. .++..++.|+.+ ..+.+||..+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344555665 22 36888898876543321 11111112222 245666777654 468999988763
Q ss_pred --eEEEEeecCCcceEEEEEecCCCCEEEEEECC-----CcEEEEECCCCCCeEEEecCCC-CeeEEEEeecCCcCEEEE
Q 002881 133 --MCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-----RTIKIWNLGSPDPNFTLDAHQK-GVNCVDYFTGGDKPYLIT 204 (871)
Q Consensus 133 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~~ 204 (871)
.....+.........+.. ++.+++.|+.+ ..+.+||+.+.+-...-..... .-.++.. .++. +++.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~--iyv~ 165 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGV--IYCL 165 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTE--EEEE
T ss_pred eeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCE--EEEE
Confidence 222111111111122222 46677777654 3588899876543222111111 1112222 2333 5666
Q ss_pred EeCC-----CeEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEEEEEecCCc
Q 002881 205 GSDD-----HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTYRLENTLNYGLE 272 (871)
Q Consensus 205 ~~~d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~ 272 (871)
|+.+ ..+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-..+..
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 6544 4688999887654322 1111111222222 45677777754 4689999887764333222222
Q ss_pred cEEEEEEeeCCCeEEEEEcC
Q 002881 273 RVWAIGYMKSSRRIVIGYDE 292 (871)
Q Consensus 273 ~i~~i~~~~~~~~l~~g~~d 292 (871)
+....+..-+++.++.|+.+
T Consensus 244 r~~~~~~~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 244 RCYVGATVLRGRLYAIAGYD 263 (301)
T ss_dssp CBSCEEEEETTEEEEECCBC
T ss_pred ccceeEEEECCEEEEEcCcC
Confidence 22122222355555555544
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.00 E-value=0.4 Score=49.74 Aligned_cols=226 Identities=9% Similarity=0.010 Sum_probs=120.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-------cCCCCeEEEEEcCC---CCEEEEEEC--------
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-------AHTDYIRCVAVHPT---LPYVLSSSD-------- 119 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~i~~i~~~~~---~~~l~~~~~-------- 119 (871)
.....++|.|+|+.|+++...|.|++++.. +.....+. ........|+++|+ +..|.++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356899999999845555678999999853 33211111 12345789999996 555655532
Q ss_pred CCeEEEEECCCCc----eEEEEeec------CCcceEEEEEecCCCCEEEEEEC-------------CCcEEEEECCCCC
Q 002881 120 DMLIKLWDWEKGW----MCTQIFEG------HSHYVMQVTFNPKDTNTFASASL-------------DRTIKIWNLGSPD 176 (871)
Q Consensus 120 dg~i~iwd~~~~~----~~~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~~ 176 (871)
...|..+++.... ....++.. ..+....+.|.| ++.+.++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356667665321 11112211 122346799999 6654444332 2467777765431
Q ss_pred ------------CeEEEecCCCCeeEEEEee-cCCcCEEEEEeCC--CeEEEEECCCC----------------------
Q 002881 177 ------------PNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDD--HTAKVWDYQTK---------------------- 219 (871)
Q Consensus 177 ------------~~~~~~~~~~~i~~i~~~~-~~~~~~l~~~~~d--g~i~v~d~~~~---------------------- 219 (871)
....+.........++|.| .+. |.++... +.=.|.-+..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~---l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA---LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE---EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCC---EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 1112222223457788888 443 4443322 11122111111
Q ss_pred ---------ceEEEecCcccCeEEEEEcC-------CCCEEEEEECCCcEEEEeCCCCeEEEE--E-ecCCccEEEEEEe
Q 002881 220 ---------SCVQTLEGHTHNVSAVCFHP-------ELPIIITGSEDGTVRIWHATTYRLENT--L-NYGLERVWAIGYM 280 (871)
Q Consensus 220 ---------~~~~~~~~~~~~v~~i~~~p-------~~~~l~~~~~dg~v~iwd~~~~~~~~~--~-~~~~~~i~~i~~~ 280 (871)
.++..+. +...+..+.|.+ ++.++++.-..+.|...++..++.... + .....++..+++.
T Consensus 253 ~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp CBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred cCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 0111222 223466777764 456666666677787777766543322 1 1223578899999
Q ss_pred eCCCeEEEE
Q 002881 281 KSSRRIVIG 289 (871)
Q Consensus 281 ~~~~~l~~g 289 (871)
|||.+.++.
T Consensus 332 pdG~lyv~t 340 (353)
T 2g8s_A 332 PDGYLYVLT 340 (353)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 998855543
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.91 E-value=0.07 Score=54.57 Aligned_cols=213 Identities=7% Similarity=-0.014 Sum_probs=106.5
Q ss_pred CeEEEEeCCCCceeEEeee--cCCCEEEEEEeCCCCEEEEEeC-----C------CeEEEEECCCCcEEEEEccCCCCe-
Q 002881 37 GTVCIWNYQSQTMAKSFEV--TELPVRSAKFVARKQWVVAGAD-----D------MFIRVYNYNTMDKVKVFEAHTDYI- 102 (871)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d------g~i~iw~~~~~~~~~~~~~~~~~i- 102 (871)
..+.+||..+++-.. ... ............++..++.|+. . ..+.+||..+.+.... .....+-
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCBSSCEE
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCCCcchh
Confidence 679999999887543 221 1123333344457788888873 1 1377889887654322 1111111
Q ss_pred -EEEEEcCCCCEEEEEECC--------CeEEEEECCCCceEEEE--eecCCcceEEEEEecCCCCEEEEEEC-C-----C
Q 002881 103 -RCVAVHPTLPYVLSSSDD--------MLIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASASL-D-----R 165 (871)
Q Consensus 103 -~~i~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~-d-----g 165 (871)
.+++.. ++..++.|+.+ ..+.+||..+. ..... +...... .+++.. ++.+++.|+. + .
T Consensus 91 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSF-KWGESDPLPYVVYG-HTVLSH--MDLVYVIGGKGSDRKCLN 165 (315)
T ss_dssp SCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTT-EEEECCCCSSCCBS-CEEEEE--TTEEEEECCBCTTSCBCC
T ss_pred ceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCC-cEeECCCCCCcccc-eeEEEE--CCEEEEEeCCCCCCcccc
Confidence 112222 45566666632 46899999876 22222 1111111 122222 4667777776 2 4
Q ss_pred cEEEEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEEEeCCC-----eEEEEECCCCceEEEec--CcccCeEEEE
Q 002881 166 TIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLE--GHTHNVSAVC 236 (871)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~--~~~~~v~~i~ 236 (871)
.+.+||+.+.+-.. +.....+ -.++.. .++. +++.|+.++ .+.+||+.+.+-...-. ........+.
T Consensus 166 ~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~~--iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 241 (315)
T 4asc_A 166 KMCVYDPKKFEWKE-LAPMQTARSLFGATV-HDGR--IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS 241 (315)
T ss_dssp CEEEEETTTTEEEE-CCCCSSCCBSCEEEE-ETTE--EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred eEEEEeCCCCeEEE-CCCCCCchhceEEEE-ECCE--EEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE
Confidence 68899987653211 1111111 112222 2332 666666543 58889988764332211 1111122222
Q ss_pred EcCCCCEEEEEECCC--------------cEEEEeCCCCe
Q 002881 237 FHPELPIIITGSEDG--------------TVRIWHATTYR 262 (871)
Q Consensus 237 ~~p~~~~l~~~~~dg--------------~v~iwd~~~~~ 262 (871)
+ ++.+++.|+.++ .+.+||+.+.+
T Consensus 242 ~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 242 L--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp E--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred E--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 2 456777777532 35667766554
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.86 E-value=0.049 Score=55.53 Aligned_cols=224 Identities=12% Similarity=0.083 Sum_probs=112.2
Q ss_pred CCCEEEEEEc----CCeEEEEeCCCCceeEEeeecCCCE-EEEEEeCCCCEEEEEeC----C-----CeEEEEECCCCcE
Q 002881 26 SEPWILASLY----SGTVCIWNYQSQTMAKSFEVTELPV-RSAKFVARKQWVVAGAD----D-----MFIRVYNYNTMDK 91 (871)
Q Consensus 26 ~~~~la~~~~----dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~----d-----g~i~iw~~~~~~~ 91 (871)
++..++.|+. -..+.+||..+++....-....... .+++ ..++..++.|+. + ..+.+||..+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 4566666763 2468999988876543211111111 1222 236666777665 2 3688899887654
Q ss_pred EEEE--ccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCceEEEE--eecCCcceEEEEEecCCCCEEEEEE
Q 002881 92 VKVF--EAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 92 ~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
...- ...........+ ++..++.|+.+ ..+.+||..+. ..... +......-..+.+ ++.+++.|+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG 176 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD-EWHLVAPMLTRRIGVGVAVL---NRLLYAVGG 176 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC-eEeECCCCCccccceEEEEE---CCEEEEEeC
Confidence 3321 111112222222 55666666543 46889998876 32222 1111111122222 466777776
Q ss_pred CC-----CcEEEEECCCCCCeEE--EecCCCCeeEEEEeecCCcCEEEEEeCC-----CeEEEEECCCCceEEE--ecCc
Q 002881 163 LD-----RTIKIWNLGSPDPNFT--LDAHQKGVNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQTKSCVQT--LEGH 228 (871)
Q Consensus 163 ~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~--~~~~ 228 (871)
.+ ..+.+||+.+.+-... +...... .++... ++. +++.|+.+ ..+.+||+.+.+-... +...
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~--iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVCVL-HNC--IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTE--EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEEEE-CCE--EEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 54 4588899876532111 1111111 122222 332 66666654 5689999887653322 1111
Q ss_pred ccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCe
Q 002881 229 THNVSAVCFHPELPIIITGSED-----GTVRIWHATTYR 262 (871)
Q Consensus 229 ~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~ 262 (871)
......+.+ ++.+++.|+.+ ..+.+||..+.+
T Consensus 253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 111222222 55677777754 347788877654
No 327
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.78 E-value=0.021 Score=57.82 Aligned_cols=101 Identities=10% Similarity=0.092 Sum_probs=70.4
Q ss_pred HHHHHHccCHHHHhhhCCCCCcchh---HHHHHHHHhCCChhhhhhcc-----c--Ccccc---e---eeeeccCCHHHH
Q 002881 595 YKTLVMRGDLERANEILPSIPKEHH---NSVARFLESRGMIEEAIEVA-----T--DPDYR---F---ELAIQLGRLEVA 658 (871)
Q Consensus 595 ~~~~~~~~~~~~a~~~l~~i~~~~~---~~~~~~~~~~~~~~~a~~~~-----~--~~~~~---f---~~~l~l~~~~~A 658 (871)
+...+..|.++.|...++....+.. ..++.++...+..+.|+... . +|+.. + .++...|++++|
T Consensus 41 ~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4556667888887766655433322 45566777777777766432 1 24432 1 556688888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 659 QEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 659 ~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
.+.+++..+...|..+|..++..|+++.|+++|.++.
T Consensus 121 l~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 121 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888887777888888888888888888888888764
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.74 E-value=0.064 Score=54.57 Aligned_cols=212 Identities=9% Similarity=0.031 Sum_probs=102.9
Q ss_pred CEEEEEeC--CCeEEEEECCCCcEEEEE--ccCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCceEEEEe--e
Q 002881 70 QWVVAGAD--DMFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIF--E 139 (871)
Q Consensus 70 ~~l~~~~~--dg~i~iw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~ 139 (871)
..++.|+. ...+.+||..+.+....- .........+. -++..++.|+.+ ..+.+||..++ .....- .
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCC
Confidence 34556654 357889998876644321 11111122222 255666777654 67899999876 322221 1
Q ss_pred cCCcceEEEEEecCCCCEEEEEECC------CcEEEEECCCCCCeEEEecCCC--CeeEEEEeecCCcCEEEEEeC----
Q 002881 140 GHSHYVMQVTFNPKDTNTFASASLD------RTIKIWNLGSPDPNFTLDAHQK--GVNCVDYFTGGDKPYLITGSD---- 207 (871)
Q Consensus 140 ~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~~l~~~~~---- 207 (871)
........+.+ ++.+++.|+.+ ..+.+||..+.+-... ..... .-.++.. .++. +++.|+.
T Consensus 90 ~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~-~~~~--iyv~GG~~~~~ 162 (306)
T 3ii7_A 90 TPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHGMVE-ANGL--IYVCGGSLGNN 162 (306)
T ss_dssp SCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEE-ETTE--EEEECCEESCT
T ss_pred ccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeEEEE-ECCE--EEEECCCCCCC
Confidence 11111122222 46677777765 4588999876542221 11111 1112222 2332 5555543
Q ss_pred -----CCeEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEEEEEecCCccEE
Q 002881 208 -----DHTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTYRLENTLNYGLERVW 275 (871)
Q Consensus 208 -----dg~i~v~d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~i~ 275 (871)
-..+.+||+.+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+..+..
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 34588999887643222 1111111222222 55677777643 3588999887653322111111111
Q ss_pred EEEEeeCCCeEEEEEcCC
Q 002881 276 AIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg 293 (871)
..+..-++..+++|+.++
T Consensus 241 ~~~~~~~~~i~v~GG~~~ 258 (306)
T 3ii7_A 241 VKCAAVGSIVYVLAGFQG 258 (306)
T ss_dssp CEEEEETTEEEEEECBCS
T ss_pred eeEEEECCEEEEEeCcCC
Confidence 111222556666666543
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.74 E-value=0.072 Score=54.09 Aligned_cols=212 Identities=14% Similarity=0.130 Sum_probs=100.7
Q ss_pred CEEEEEeCC----CeEEEEECCCCcEEEEE--ccCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCceEEEEe
Q 002881 70 QWVVAGADD----MFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWMCTQIF 138 (871)
Q Consensus 70 ~~l~~~~~d----g~i~iw~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~ 138 (871)
..++.|+.+ ..+..||..+.+....- ......-..+.+ ++..++.|+.+ ..+.+||..+. .....-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTT-EEEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCC-ceeeCC
Confidence 445555532 35788888876543321 111111122222 55666677654 35889998876 332221
Q ss_pred e--cCCcceEEEEEecCCCCEEEEEECCC-----cEEEEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEEEeC--
Q 002881 139 E--GHSHYVMQVTFNPKDTNTFASASLDR-----TIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSD-- 207 (871)
Q Consensus 139 ~--~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~-- 207 (871)
. ........+.+ ++.+++.|+.++ .+.+||+.+.+-... .....+ -.++.. .++. +++.|+.
T Consensus 94 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~-~~~~--iyv~GG~~~ 166 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVGV-VGGL--LYAVGGYDV 166 (302)
T ss_dssp CCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEE-ETTE--EEEECCEET
T ss_pred CCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEEE-ECCE--EEEEeCCCC
Confidence 1 11111122222 467777777653 477888876542221 111111 112222 2332 5555543
Q ss_pred -----CCeEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEEEEEecCCccEE
Q 002881 208 -----DHTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTYRLENTLNYGLERVW 275 (871)
Q Consensus 208 -----dg~i~v~d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~i~ 275 (871)
...+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-.....+..
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 244 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN 244 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc
Confidence 24588999887653322 1111111222222 56677777754 3688999887654332222211111
Q ss_pred EEEEeeCCCeEEEEEcCC
Q 002881 276 AIGYMKSSRRIVIGYDEG 293 (871)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg 293 (871)
..+...+++.+++|+.++
T Consensus 245 ~~~~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 245 AGVCAVNGLLYVVGGDDG 262 (302)
T ss_dssp CEEEEETTEEEEECCBCS
T ss_pred CeEEEECCEEEEECCcCC
Confidence 112223555555555443
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.60 E-value=0.2 Score=51.87 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=93.5
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeec----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------
Q 002881 23 LHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT----ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-------- 90 (871)
Q Consensus 23 ~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------- 90 (871)
...+|..++++- ++.||.-++..+..-+.+... -..|..+..+|+|++||..+. ..|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccc
Confidence 345666666664 678888887755555555543 236888999999999998865 478888876221
Q ss_pred ----EEEEEcc------CCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCceEEEEeec---------CCcceEEE
Q 002881 91 ----KVKVFEA------HTDYIRCVAVHPT---LPYVLSSSDDMLIKLWDWEKGWMCTQIFEG---------HSHYVMQV 148 (871)
Q Consensus 91 ----~~~~~~~------~~~~i~~i~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~ 148 (871)
..+.+.- ...+|..+.|||- +..|++-..|+.|++||+.........+.. ....|.++
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 1223321 3567999999994 568999999999999999863211112221 12457778
Q ss_pred EEecCCCCEEEEEE--CCCcEE
Q 002881 149 TFNPKDTNTFASAS--LDRTIK 168 (871)
Q Consensus 149 ~~~p~~~~~l~~~~--~dg~i~ 168 (871)
+|.+ ++-.|...+ ..|.|+
T Consensus 186 ~Fg~-~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 186 EFSK-DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EECT-TSSCEEEEECTTSCEEE
T ss_pred EEcC-CCcEEEEEecCCCCCEE
Confidence 8876 555555544 445544
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.51 E-value=0.21 Score=51.07 Aligned_cols=213 Identities=11% Similarity=0.046 Sum_probs=104.1
Q ss_pred eEEEEeCCCCceeEEeeec--CCCEEEEEEeCCCCEEEEEeC----CC-------eEEEEECCCCcEEEEE--ccCCCCe
Q 002881 38 TVCIWNYQSQTMAKSFEVT--ELPVRSAKFVARKQWVVAGAD----DM-------FIRVYNYNTMDKVKVF--EAHTDYI 102 (871)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iw~~~~~~~~~~~--~~~~~~i 102 (871)
.+..||..+++... .... ...........++..++.|+. ++ .+.+||..+.+....- .......
T Consensus 25 ~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 48999998887654 2211 122233334567788888873 12 2778888776543321 1111111
Q ss_pred EEEEEcCCCCEEEEEECC-------CeEEEEECCCCceEEEEeecC-CcceEEEEEecCCCCEEEEEEC------CCcEE
Q 002881 103 RCVAVHPTLPYVLSSSDD-------MLIKLWDWEKGWMCTQIFEGH-SHYVMQVTFNPKDTNTFASASL------DRTIK 168 (871)
Q Consensus 103 ~~i~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~------dg~i~ 168 (871)
....+ ++..++.|+.+ ..+.+||..+. .....-... ...-.+++.. ++.+++.|+. -..+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA-KWSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT-EEEEECCCSSCEESCEEEEE--TTEEEEECCEESSSCBCCCEE
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC-CEeECCCCCCcccccEEEEE--CCEEEEEcCCCCCCCccceEE
Confidence 22222 45666777653 35888998876 332221100 0001112222 5667777654 23588
Q ss_pred EEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEEEeCC-----CeEEEEECCCCceEEE--ecCcccCeEEEEEcC
Q 002881 169 IWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHP 239 (871)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~i~~~p 239 (871)
+||+.+.+-... .....+ -.++.. .++ . +++.|+.+ ..+.+||+.+.+-... +.........+. -
T Consensus 179 ~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~-~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~ 252 (318)
T 2woz_A 179 IYNPKKGDWKDL-APMKTPRSMFGVAI-HKG-K-IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--L 252 (318)
T ss_dssp EEETTTTEEEEE-CCCSSCCBSCEEEE-ETT-E-EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--E
T ss_pred EEcCCCCEEEEC-CCCCCCcccceEEE-ECC-E-EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--E
Confidence 999876542221 111111 112222 233 2 56666543 3577899887653222 111111112222 2
Q ss_pred CCCEEEEEECC--------------CcEEEEeCCCCe
Q 002881 240 ELPIIITGSED--------------GTVRIWHATTYR 262 (871)
Q Consensus 240 ~~~~l~~~~~d--------------g~v~iwd~~~~~ 262 (871)
++.+++.|+.+ ..+.+||..+.+
T Consensus 253 ~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 45667776653 246677766554
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.49 E-value=0.83 Score=45.91 Aligned_cols=210 Identities=10% Similarity=0.040 Sum_probs=118.6
Q ss_pred EcCCCCEEEEEEc--CCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCC--------------CeEEEEEC
Q 002881 23 LHPSEPWILASLY--SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--------------MFIRVYNY 86 (871)
Q Consensus 23 ~s~~~~~la~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iw~~ 86 (871)
|++++.+|..... ++.|...+.+... ...+... .+--++++|.+|+-+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 3457788877653 5667777754433 3444322 234568999999877553 46788888
Q ss_pred CCCcEEEEEccCCCCeEEEEEcCCCCEEEEEE----CCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002881 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS----DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
+.++...... .. +..|++++++|+-.. .+..|..-++... ... .+..+.. ..++|.+..+..+..
T Consensus 96 dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~-~lt~~~~----~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 96 NGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKK-KIKNHYL----FTCNTSDRYFYYNNP 164 (302)
T ss_dssp TSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCE-EEESSCC----CCSEEETTEEEEECT
T ss_pred CCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeE-EEeCCCc----eEeeEECCEEEEEeC
Confidence 7665433322 11 236788888888776 3345666666644 222 3333322 334563444444443
Q ss_pred CCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCC--CeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 002881 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD--HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (871)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~ 240 (871)
....|.+.++.++.....+. .... ..++|.+. +|+-.... ..|..-++.... ...+. ...+ ..|+|+
T Consensus 165 g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~--~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~ 233 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDT--NVYYMDVNRDNAIVHVNINNPN-PVVLT--EANI--EHYNVY 233 (302)
T ss_dssp TTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETT--EEEEEEGGGTTEEEEECSSSCC-CEECS--CSCE--EEEEEE
T ss_pred CCceEEEEECCCCCEEEEeC---CCcc-ceeeecCC--EEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCc--ceEEEC
Confidence 46788888887665443332 2222 33568777 45544433 467777776443 33333 2233 347888
Q ss_pred CCEEEEEE--CCCcEEEEeCC
Q 002881 241 LPIIITGS--EDGTVRIWHAT 259 (871)
Q Consensus 241 ~~~l~~~~--~dg~v~iwd~~ 259 (871)
+..|.-++ ..+.|..-++.
T Consensus 234 g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 234 GSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp TTEEEEEECSSSCEEEEEETT
T ss_pred CCEEEEEECCCCcEEEEEECC
Confidence 88887653 23566666655
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.40 E-value=0.22 Score=50.78 Aligned_cols=208 Identities=9% Similarity=-0.034 Sum_probs=101.5
Q ss_pred EEEEeCCCeEEEEECCCCcEEEE-EccCCCCeEEEEEcCCCCEEEEEEC----C-------CeEEEEECCCCceEEEEee
Q 002881 72 VVAGADDMFIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTLPYVLSSSD----D-------MLIKLWDWEKGWMCTQIFE 139 (871)
Q Consensus 72 l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~~~~ 139 (871)
++.|+ ..+.+||..+.+.... +..............++..++.|+. + ..+..||..++ ..... .
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~-~ 83 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGM-P 83 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT-EEEEC-C
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC-eEEEC-C
Confidence 44555 5789999988775431 1112122333344456777778873 1 12778898876 32222 1
Q ss_pred cCCcce--EEEEEecCCCCEEEEEECC--------CcEEEEECCCCCCeEEEecCCCC--eeEEEEeecCCcCEEEEEeC
Q 002881 140 GHSHYV--MQVTFNPKDTNTFASASLD--------RTIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSD 207 (871)
Q Consensus 140 ~~~~~v--~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~~~~~ 207 (871)
....+- .+++.. ++.+++.|+.+ ..+.+||..+.+-.. +.....+ -.++.. .++. +++.|+.
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~--iyv~GG~ 157 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGHTVLS-HMDL--VYVIGGK 157 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE-ETTE--EEEECCB
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccceeEEE-ECCE--EEEEeCC
Confidence 111111 122222 45677776632 458889987653211 1111111 112222 2333 5666665
Q ss_pred -C-----CeEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCeEEEEEecCCccE
Q 002881 208 -D-----HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSEDG-----TVRIWHATTYRLENTLNYGLERV 274 (871)
Q Consensus 208 -d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~i 274 (871)
+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.++ .+.+||..+.+-...-..+..+.
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 2 4689999887643221 1111111222222 566777787654 48889988765433222222222
Q ss_pred EEEEEeeCCCeEEEEEc
Q 002881 275 WAIGYMKSSRRIVIGYD 291 (871)
Q Consensus 275 ~~i~~~~~~~~l~~g~~ 291 (871)
...+..-+++.+++|+.
T Consensus 236 ~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 236 SLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ceeEEEECCEEEEECCc
Confidence 21222235555566654
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.39 E-value=1.4 Score=47.33 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=61.6
Q ss_pred CCEEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCceeEEeee--------cCCCEEEEEEeCC---CCEEEEEeC------
Q 002881 16 ERVKSVDLHPSEPWILASLYS-GTVCIWNYQSQTMAKSFEV--------TELPVRSAKFVAR---KQWVVAGAD------ 77 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~d-g~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~---~~~l~~~~~------ 77 (871)
....+|+|.|+|+++++ ... +.|++++..++........ .......++|+|+ +.+|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 45789999999985555 455 4799888655544322211 1345679999996 666665542
Q ss_pred -------CCeEEEEECCCC--c-----EEE-EEc-cCCCCeEEEEEcCCCCEEEEEE
Q 002881 78 -------DMFIRVYNYNTM--D-----KVK-VFE-AHTDYIRCVAVHPTLPYVLSSS 118 (871)
Q Consensus 78 -------dg~i~iw~~~~~--~-----~~~-~~~-~~~~~i~~i~~~~~~~~l~~~~ 118 (871)
...|.-|+.... . .+. .+. ........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666655322 1 111 122 1123478899999998666654
No 335
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.38 E-value=0.012 Score=52.55 Aligned_cols=108 Identities=14% Similarity=0.080 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCChhhhhhcccC-cccce---eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHH
Q 002881 620 NSVARFLESRGMIEEAIEVATD-PDYRF---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGC 690 (871)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~~~-~~~~f---~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~ 690 (871)
..+..++...+..++++.+..+ ++..+ ..+...|++++|.++.+.. .++..|..||..+...|+++.|+++
T Consensus 13 ~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 13 TAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp HHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence 5666777777777777655322 22222 3456789999999998753 4578999999999999999999999
Q ss_pred HHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002881 691 MKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 691 y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
|.++-..+ -+++...-. -+.++..+|++++|++.|.+
T Consensus 93 ~~~al~l~--------P~~~~~~~~-------------lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 93 YAVAFALG--------KNDYTPVFH-------------TGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHS--------SSCCHHHHH-------------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhC--------CCCcHHHHH-------------HHHHHHHcCCHHHHHHHHHH
Confidence 98863221 122222222 23456678888888877763
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.36 E-value=0.068 Score=54.46 Aligned_cols=185 Identities=10% Similarity=0.073 Sum_probs=91.4
Q ss_pred CCCEEEEEeC----CCeEEEEECCCCcEEEEEc--cCCCCeEEEEEcCCCCEEEEEEC----C-----CeEEEEECCCCc
Q 002881 68 RKQWVVAGAD----DMFIRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSD----D-----MLIKLWDWEKGW 132 (871)
Q Consensus 68 ~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~----d-----g~i~iwd~~~~~ 132 (871)
++..++.|+. -..+.+||..+.+....-. ....... ++.. ++..++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~- 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA-GCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN- 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT-
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce-EEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC-
Confidence 4556666653 2367888887765433211 1111112 2222 4556666664 2 46889998876
Q ss_pred eEEEEe--ecCCcceEEEEEecCCCCEEEEEECC-----CcEEEEECCCCCCeEE--EecCCCCeeEEEEeecCCcCEEE
Q 002881 133 MCTQIF--EGHSHYVMQVTFNPKDTNTFASASLD-----RTIKIWNLGSPDPNFT--LDAHQKGVNCVDYFTGGDKPYLI 203 (871)
Q Consensus 133 ~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~~l~ 203 (871)
.....- .........+.+ ++.+++.|+.+ ..+.+||+.+.+-... +....... ++... ++. +++
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~--iyv 173 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-NRL--LYA 173 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTE--EEE
T ss_pred eEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE-CCE--EEE
Confidence 322221 111111122222 45677776643 3578888876532211 11111111 22222 332 566
Q ss_pred EEeCC-----CeEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEE
Q 002881 204 TGSDD-----HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTYRLE 264 (871)
Q Consensus 204 ~~~~d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~~~ 264 (871)
.|+.+ ..+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 66543 4688999876643221 1111112222333 56677777754 46899998876543
No 337
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.34 E-value=0.44 Score=49.01 Aligned_cols=195 Identities=8% Similarity=0.060 Sum_probs=110.2
Q ss_pred CEEEEEEeCCCCEEEEE------------eCCCeEEEEECCC--CcEEE-EEcc-----CCCCeEEEEEcC--CCC-EEE
Q 002881 59 PVRSAKFVARKQWVVAG------------ADDMFIRVYNYNT--MDKVK-VFEA-----HTDYIRCVAVHP--TLP-YVL 115 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~------------~~dg~i~iw~~~~--~~~~~-~~~~-----~~~~i~~i~~~~--~~~-~l~ 115 (871)
..-.+...|+|..++++ ..+|.|.++|.++ ++... .+.+ .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677776444333 1689999999873 22211 1222 223567777766 343 455
Q ss_pred EEEC---CCeEEEEECCCCceE---EEEeecC-CcceEEEEEecCCCCEEEEEE-----------------CCCcEEEEE
Q 002881 116 SSSD---DMLIKLWDWEKGWMC---TQIFEGH-SHYVMQVTFNPKDTNTFASAS-----------------LDRTIKIWN 171 (871)
Q Consensus 116 ~~~~---dg~i~iwd~~~~~~~---~~~~~~~-~~~v~~~~~~p~~~~~l~~~~-----------------~dg~i~i~d 171 (871)
++.. +..|.+|+++..... ...+.+. -.....+...+ ++...++.. ..|.|..+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 5532 467778776643222 2222221 23468888888 666555543 124555555
Q ss_pred CCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC-Cce--EEEecCcccCeEEEEEcC-CCCEEEEE
Q 002881 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSC--VQTLEGHTHNVSAVCFHP-ELPIIITG 247 (871)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~i~~~p-~~~~l~~~ 247 (871)
. ++ ...+...-...+.++|+|+++. ++++-+..+.|..|++.. +.. ...+. .....-.+++.+ +|.+.+++
T Consensus 210 ~--~~-~~~~~~~l~~pNGia~spDg~~-lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 210 P--ND-VRVVAEGFDFANGINISPDGKY-VYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp T--TC-CEEEEEEESSEEEEEECTTSSE-EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred C--Ce-EEEeecCCcccCcceECCCCCE-EEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence 4 33 2333333345689999999874 444555678999999863 322 22332 235567889999 58877766
Q ss_pred ECC-CcEEEEeCC
Q 002881 248 SED-GTVRIWHAT 259 (871)
Q Consensus 248 ~~d-g~v~iwd~~ 259 (871)
..+ +.|..|+..
T Consensus 285 ~~~g~~v~~~~P~ 297 (355)
T 3sre_A 285 HPNGMRIFFYDAE 297 (355)
T ss_dssp ESCHHHHHSCCTT
T ss_pred cCCceEEEEECCC
Confidence 644 345555543
No 338
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.28 E-value=0.24 Score=51.33 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=91.6
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--------
Q 002881 65 FVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH----TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-------- 132 (871)
Q Consensus 65 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~-------- 132 (871)
...+|..++++- ++.||.-++......+.+... -+.|..+..||+|.+|+..+.. .|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccc
Confidence 345666666654 367887777755455555433 2368889999999999988664 78888887321
Q ss_pred ---eEEEEeec------CCcceEEEEEecCC--CCEEEEEECCCcEEEEECCCC--CCeEEEe---------cCCCCeeE
Q 002881 133 ---MCTQIFEG------HSHYVMQVTFNPKD--TNTFASASLDRTIKIWNLGSP--DPNFTLD---------AHQKGVNC 190 (871)
Q Consensus 133 ---~~~~~~~~------~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~i~~ 190 (871)
.....+.- ...+|..+.|+|-+ +..|++-..|+.|++||+... +|. .+. .....|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 01112221 24679999999943 458999999999999999752 222 332 11244666
Q ss_pred EEEeecCCcCEEEEEeCCCeEEEE
Q 002881 191 VDYFTGGDKPYLITGSDDHTAKVW 214 (871)
Q Consensus 191 i~~~~~~~~~~l~~~~~dg~i~v~ 214 (871)
++|.+++-.-|+++.+.+|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 677664432222223355655544
No 339
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.25 E-value=1.3 Score=45.38 Aligned_cols=229 Identities=11% Similarity=0.054 Sum_probs=122.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE--E----ccCCCCeEEEEEcCC---CCEEEEE---ECCCeE
Q 002881 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV--F----EAHTDYIRCVAVHPT---LPYVLSS---SDDMLI 123 (871)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~----~~~~~~i~~i~~~~~---~~~l~~~---~~dg~i 123 (871)
.-.....++|.|+|..+++--..|.|++++..+++.... + .........|+++|+ +..|.+. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 344678999999999766665589999998665554222 2 123456889999995 4455543 234567
Q ss_pred EEEECCCC----------ceEEEEee-cCCcceEEEEEecCCCCEEEEEEC-------------CCcEEEEECCCCC---
Q 002881 124 KLWDWEKG----------WMCTQIFE-GHSHYVMQVTFNPKDTNTFASASL-------------DRTIKIWNLGSPD--- 176 (871)
Q Consensus 124 ~iwd~~~~----------~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~~--- 176 (871)
.-|.+..+ ..+...+. ...+....+.|.| ++.+.++.+. .|.|.-.+....-
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 77766541 11111121 2233456799999 6666666432 3556555654320
Q ss_pred ----CeEEEecCCCCeeEEEEeecCCcCEEEEEe--CCCeEEEEECCCCc------------------eEEEecCcccCe
Q 002881 177 ----PNFTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTKS------------------CVQTLEGHTHNV 232 (871)
Q Consensus 177 ----~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~------------------~~~~~~~~~~~v 232 (871)
....+.........++|.|++. |.++. .++.=.+--+..+. ++..+..+....
T Consensus 189 nPf~~~~i~a~G~RNp~Gla~dp~G~---L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 189 NPFPGSPVYSYGHRNVQGLAWDDKQR---LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp CSSTTCCEEEBCCSBCCEEEECTTCC---EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCCeEEeeCCCCcceEEECCCCC---EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 0112222223346788888654 33332 22211221111111 122222122345
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCe----EEEEEecCCccEEEEEEeeCCCeEEEE
Q 002881 233 SAVCFHPELPIIITGSEDGTVRIWHATTYR----LENTLNYGLERVWAIGYMKSSRRIVIG 289 (871)
Q Consensus 233 ~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~g 289 (871)
..++|.. +..+...-..+.|....+.... ....+....+++..++..|||.+.++.
T Consensus 266 ~G~~~~~-g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 266 SGIAYAE-GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EEEEEET-TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred cceEEEc-CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 6677763 4455554455566666554432 223333344788999999998765543
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.71 Score=46.95 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=105.9
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEeeec-CCCEEEEEE--eCCCCEEEEE--eCCCeEEEEECCCCcEEEEEcc----C
Q 002881 28 PWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKF--VARKQWVVAG--ADDMFIRVYNYNTMDKVKVFEA----H 98 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~----~ 98 (871)
..+++++.||.|.-+|..+|+..-.++.. ..++....- .+.+..++.+ +.||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 36888999999999999999998888754 122222110 0112244444 5899999999988865544431 2
Q ss_pred CCCeEE---EEE-----cCCCCEEEEEECCCeEEEEECCCCceEEEEeecCC-cc------eEEEEEe---c-CCCCEEE
Q 002881 99 TDYIRC---VAV-----HPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS-HY------VMQVTFN---P-KDTNTFA 159 (871)
Q Consensus 99 ~~~i~~---i~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~------v~~~~~~---p-~~~~~l~ 159 (871)
..++.. ... ...+..+++|+.+|.+.-.|..++.. ...+.... .. ..|.... . ..+..++
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI-ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE-EEEESTTCBCC--------------------CCEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE-EEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 222321 001 01345789999999999999999944 44433221 10 1111110 0 1235677
Q ss_pred EEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeec-------------CCcCEEEEEeCCCeEEEEECCCCceEE
Q 002881 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-------------GDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (871)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-------------~~~~~l~~~~~dg~i~v~d~~~~~~~~ 223 (871)
.+..+..+.+.+ ++++ ..... --.|.+. .++ .+++++.||.|.-+|..+|..+.
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~-------~s~~~~~~~~~~~~~~~~~s~Dg-~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVT-------YSTWQQNVLDVPLALQNTFSKDG-MCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCE-------EEEEECCTTTHHHHTTCSSCSSS-CCEEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCC-eEEEe-------cccccccccccccccccccccCC-cEEEECCCCEEEEEECCCCcEEE
Confidence 777777777766 3343 21111 0111111 011 23568899999999999888876
No 341
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.19 E-value=0.022 Score=54.70 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=15.1
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMST 681 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~ 681 (871)
...+|++++|.+.+++. +....|..+|..+...
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 49 QLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 34445555555444321 2233455555555555
No 342
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.08 E-value=0.044 Score=62.93 Aligned_cols=131 Identities=20% Similarity=0.198 Sum_probs=71.3
Q ss_pred HHHHHHHHhCCChhhhhhcc-----cCcccce------eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCC
Q 002881 620 NSVARFLESRGMIEEAIEVA-----TDPDYRF------ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (871)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~-----~~~~~~f------~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~ 683 (871)
..+...+..+|..++|.... -+|+..- .++.++|++++|.+..++. +....|..||..+...|+
T Consensus 13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 13 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 45556666677777766432 2333221 4455667777777666542 345567777777777777
Q ss_pred hhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc---C-C----HHHHHHHHHHCCCchHH
Q 002881 684 LEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML---G-K----LEDCLQLLVESNRIPEA 755 (871)
Q Consensus 684 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---g-~----~~~a~~l~~~~~~~~~A 755 (871)
++.|+++|.++-. ..-++.+....++.+....|++..|..+|.+. . + +..-..+|...++|++|
T Consensus 93 ~~~A~~~~~kAl~--------l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 93 VQGALQCYTRAIQ--------INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7777777766421 22334444555666666666666655554331 1 1 22233445555555555
Q ss_pred HHH
Q 002881 756 ALM 758 (871)
Q Consensus 756 ~~l 758 (871)
.+.
T Consensus 165 ~~~ 167 (723)
T 4gyw_A 165 DER 167 (723)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.93 E-value=0.17 Score=52.84 Aligned_cols=232 Identities=8% Similarity=-0.003 Sum_probs=107.7
Q ss_pred CCCEEEEEEc-CCeEEEEeCCC--CceeEEeeec-CCCE-EEEEEeCCCCEEEEEeC-C---------CeEEEEECCCCc
Q 002881 26 SEPWILASLY-SGTVCIWNYQS--QTMAKSFEVT-ELPV-RSAKFVARKQWVVAGAD-D---------MFIRVYNYNTMD 90 (871)
Q Consensus 26 ~~~~la~~~~-dg~v~iwd~~~--~~~~~~~~~~-~~~v-~~~~~~~~~~~l~~~~~-d---------g~i~iw~~~~~~ 90 (871)
++..++.|+. ...+.+||..+ .+....-... .... .+++ .-++..++.|+. + ..+.+||..+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSA-FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEE-EETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEE-EECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 5555566654 45789999864 3332211111 1111 1222 225666777765 2 468899988765
Q ss_pred EEEEEccC-CCCeEEEEEcCCCCEEEEEECC---------------------------------------CeEEEEECCC
Q 002881 91 KVKVFEAH-TDYIRCVAVHPTLPYVLSSSDD---------------------------------------MLIKLWDWEK 130 (871)
Q Consensus 91 ~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d---------------------------------------g~i~iwd~~~ 130 (871)
....-... .......+...++..++.|+.+ ..+.+||..+
T Consensus 98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 177 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177 (357)
T ss_dssp EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTT
T ss_pred EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCC
Confidence 44322111 1111111122456677777754 5789999987
Q ss_pred CceEEEEee-cCCcce-EEEEEecCCCCEEEEEEC------CCcEEEEECCCCCCeEEE-ecC--CC-CeeEEEEeecCC
Q 002881 131 GWMCTQIFE-GHSHYV-MQVTFNPKDTNTFASASL------DRTIKIWNLGSPDPNFTL-DAH--QK-GVNCVDYFTGGD 198 (871)
Q Consensus 131 ~~~~~~~~~-~~~~~v-~~~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~-~~~--~~-~i~~i~~~~~~~ 198 (871)
. .....-. .....- .+++.. ++.+++.|+. ...+.+||+...+..... ... .. .........++.
T Consensus 178 ~-~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 178 Q-QWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp T-EEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred C-cEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 6 3222211 111111 233333 4667777653 345777877322222222 111 11 111112222333
Q ss_pred cCEEEEEeCC----------------------CeEEEEECCCCce--EEEecCcccCeEEEEEcCCCCEEEEEECCC---
Q 002881 199 KPYLITGSDD----------------------HTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDG--- 251 (871)
Q Consensus 199 ~~~l~~~~~d----------------------g~i~v~d~~~~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg--- 251 (871)
+++.|+.+ ..+.+||+.+.+- +..+......-.++ ..++.+++.|+.++
T Consensus 255 --iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 255 --LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGK 330 (357)
T ss_dssp --EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGC
T ss_pred --EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCC
Confidence 56666532 2577899876543 33332222222222 23567788888553
Q ss_pred ---cEEEEeCCCCeEEE
Q 002881 252 ---TVRIWHATTYRLEN 265 (871)
Q Consensus 252 ---~v~iwd~~~~~~~~ 265 (871)
.|.++++++++...
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 35555776665443
No 344
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.91 E-value=0.047 Score=62.69 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 651 QLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
++|++++|.+..++. +....|..||..+.+.|+++.|+++|.++
T Consensus 21 ~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555444431 22344445555555555555555555443
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.81 E-value=2 Score=43.89 Aligned_cols=229 Identities=14% Similarity=0.056 Sum_probs=123.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEE--e----eecCCCEEEEEEeCC---CCEEEEE---eCCCeEE
Q 002881 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--F----EVTELPVRSAKFVAR---KQWVVAG---ADDMFIR 82 (871)
Q Consensus 15 ~~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i~ 82 (871)
-.....|+|.|+|..+++-...|.|++++..++..... + .........++++|+ +.+|.+. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 35678999999998555543389999998665553221 1 112456889999996 4555543 2355676
Q ss_pred EEECCCC----------cEE-EEEc-cCCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCc-----
Q 002881 83 VYNYNTM----------DKV-KVFE-AHTDYIRCVAVHPTLPYVLSSSD-------------DMLIKLWDWEKGW----- 132 (871)
Q Consensus 83 iw~~~~~----------~~~-~~~~-~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~----- 132 (871)
-|.+..+ +.+ ..+. ........|.|.|+|.+.++.++ .|.|.-.+.+..-
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6766541 111 1222 11123467999999976666442 3555555554320
Q ss_pred --eEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEEEECCCC------------------CCeEEEecCCCCeeEE
Q 002881 133 --MCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSP------------------DPNFTLDAHQKGVNCV 191 (871)
Q Consensus 133 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~------------------~~~~~~~~~~~~i~~i 191 (871)
.....-.+|.. ...++|+| ++.++++=. .++.=.+.-+..+ .++..+..+......+
T Consensus 191 f~~~~i~a~G~RN-p~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 191 FPGSPVYSYGHRN-VQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp STTCCEEEBCCSB-CCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCeEEeeCCCC-cceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 01112234543 56789999 565554432 2222222222211 1222332222344556
Q ss_pred EEeecCCcCEEEEEeCCCeEEEEECCCCc----eEEEecCcccCeEEEEEcCCCCEEEEEE
Q 002881 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
.|.. +. +++.....+.|....+.... ....+.+....+..+...|+|.++++..
T Consensus 269 ~~~~-g~--~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 269 AYAE-GS--VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEET-TE--EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred EEEc-Cc--eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6652 32 45555555666666665432 2233444456788888888886555443
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.79 E-value=1.9 Score=45.42 Aligned_cols=258 Identities=10% Similarity=-0.043 Sum_probs=125.7
Q ss_pred CCCEEEEEEcC--CCCEEEEEEcCC----eEEEEeCCCCceeEEeee--------------cCCCEEEEEEeCC--CCEE
Q 002881 15 SERVKSVDLHP--SEPWILASLYSG----TVCIWNYQSQTMAKSFEV--------------TELPVRSAKFVAR--KQWV 72 (871)
Q Consensus 15 ~~~v~~i~~s~--~~~~la~~~~dg----~v~iwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l 72 (871)
...|.+|+++| .+. |.+++..| .|...+ +.+..-..+.. ....|.++++.|. ...+
T Consensus 54 ~~~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPER-MLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTC-EEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCe-EEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35699999999 444 55555455 454443 33332222211 1124778888872 4566
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEcc-------------------CCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCc
Q 002881 73 VAGADDMFIRVYNYNTMDKVKVFEA-------------------HTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGW 132 (871)
Q Consensus 73 ~~~~~dg~i~iw~~~~~~~~~~~~~-------------------~~~~i~~i~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 132 (871)
.+++..+-|...+ +.++.-..+.. ....+.+|.++|. ...|.+++.++.|...+-. +.
T Consensus 132 ~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~ 209 (394)
T 3b7f_A 132 YAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT 209 (394)
T ss_dssp EEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TS
T ss_pred EEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CC
Confidence 6666666554442 22332222211 1235788999884 3456666655555544322 21
Q ss_pred eEEEEeec----C--------CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEec-C-C---CCeeEEEEee
Q 002881 133 MCTQIFEG----H--------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-H-Q---KGVNCVDYFT 195 (871)
Q Consensus 133 ~~~~~~~~----~--------~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-~---~~i~~i~~~~ 195 (871)
........ + ...+.++.++|.+...+.+++..+ |...+- .+..-..+.. . . ..+.++...|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 22222111 0 134889999986567787777554 444432 2221111111 1 1 2345677766
Q ss_pred cCCcCEEEEEeC-----------CCeEEEEECCC-CceEEEec-Cccc-----C--eEEEEEcCCC-CEEEEEECCCcEE
Q 002881 196 GGDKPYLITGSD-----------DHTAKVWDYQT-KSCVQTLE-GHTH-----N--VSAVCFHPEL-PIIITGSEDGTVR 254 (871)
Q Consensus 196 ~~~~~~l~~~~~-----------dg~i~v~d~~~-~~~~~~~~-~~~~-----~--v~~i~~~p~~-~~l~~~~~dg~v~ 254 (871)
...+ .+.++.. ++...+|...+ ++....+. +... . ...++++|.. ..|+.++.++.|.
T Consensus 288 ~~~~-~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 288 RDPR-TVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp SCTT-CEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCC-EEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 4433 3444431 23344554443 33333221 1111 0 1357788743 4566676666665
Q ss_pred EEeCCCCeEEEEEecCCccEEEEEEe
Q 002881 255 IWHATTYRLENTLNYGLERVWAIGYM 280 (871)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~i~~i~~~ 280 (871)
.-+ ..++.-..+......+.++.|.
T Consensus 367 ~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 367 ASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEC-CCCCCceEcccCCCCeeEEEEe
Confidence 433 3344434444444556666654
No 347
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.70 E-value=0.53 Score=47.96 Aligned_cols=175 Identities=9% Similarity=0.020 Sum_probs=85.3
Q ss_pred eEEEEECCCCcEEEE-EccCCCCeEEEEEcCCCCEEEEEEC----CC-------eEEEEECCCCceEEEEeec-CCcceE
Q 002881 80 FIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTLPYVLSSSD----DM-------LIKLWDWEKGWMCTQIFEG-HSHYVM 146 (871)
Q Consensus 80 ~i~iw~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~-~~~~v~ 146 (871)
.+..||..+.+.... +..............++..++.|+. ++ .+..||..+. .....-.. ....-.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-EWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT-EEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC-cEEECCCCCcccccc
Confidence 478899888775442 1111122223334456777777773 12 2778898776 33222110 111111
Q ss_pred EEEEecCCCCEEEEEECC-------CcEEEEECCCCCCeEEEecCCCCe--eEEEEeecCCcCEEEEEeC------CCeE
Q 002881 147 QVTFNPKDTNTFASASLD-------RTIKIWNLGSPDPNFTLDAHQKGV--NCVDYFTGGDKPYLITGSD------DHTA 211 (871)
Q Consensus 147 ~~~~~p~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~~l~~~~~------dg~i 211 (871)
+++.. ++.+++.|+.+ ..+.+||+.+.+-.. +.....+. .++.. .++. +++.|+. ...+
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~~--iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVIS-HNGM--IYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEE-ETTE--EEEECCEESSSCBCCCE
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEE-ECCE--EEEEcCCCCCCCccceE
Confidence 22222 46677777754 247788887654222 11111111 12222 2333 5555553 2458
Q ss_pred EEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeE
Q 002881 212 KVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTYRL 263 (871)
Q Consensus 212 ~v~d~~~~~~~~~--~~~~~~~v~~i~~~p~~~~l~~~~~d-----g~v~iwd~~~~~~ 263 (871)
.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-
T Consensus 178 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 178 FIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 9999987653322 1111111222222 45677777643 2477888877653
No 348
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.69 E-value=2.3 Score=43.67 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCEEEEEE-------------CCCeEEEEECCCC--ceEEEEeec-----CCcceEEEEEecC-CC-CEEE
Q 002881 102 IRCVAVHPTLPYVLSSS-------------DDMLIKLWDWEKG--WMCTQIFEG-----HSHYVMQVTFNPK-DT-NTFA 159 (871)
Q Consensus 102 i~~i~~~~~~~~l~~~~-------------~dg~i~iwd~~~~--~~~~~~~~~-----~~~~v~~~~~~p~-~~-~~l~ 159 (871)
...+...|+|. +++++ .+|.|.++|.++. ....-.+.+ .......+.+.++ ++ ..|+
T Consensus 52 ~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45566677664 34443 6899999998732 111112222 2235667776552 23 2344
Q ss_pred EE-EC--CCcEEEEECCCCCCeE----EEecC-CCCeeEEEEeecCCcCEEEEEe-----------------CCCeEEEE
Q 002881 160 SA-SL--DRTIKIWNLGSPDPNF----TLDAH-QKGVNCVDYFTGGDKPYLITGS-----------------DDHTAKVW 214 (871)
Q Consensus 160 ~~-~~--dg~i~i~d~~~~~~~~----~~~~~-~~~i~~i~~~~~~~~~~l~~~~-----------------~dg~i~v~ 214 (871)
++ .. +.+|.+|++....... .+.+. -...+.+.+.++|. +.++.. ..|.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 44 33 4677887775543222 22222 24578888888876 444432 12455555
Q ss_pred ECCCCceEEEecCcccCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC-CeE--EEEEecCCccEEEEEEee-CCCeEEEE
Q 002881 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIWHATT-YRL--ENTLNYGLERVWAIGYMK-SSRRIVIG 289 (871)
Q Consensus 215 d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~-~dg~v~iwd~~~-~~~--~~~~~~~~~~i~~i~~~~-~~~~l~~g 289 (871)
|. ++. ..+...-.....++|+|+++.++++. ..+.|..|++.. ++. ...+.. .+..-.+++.+ +|+..+++
T Consensus 209 d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 209 SP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp CT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEE
T ss_pred EC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-CCCCceEEEeCCCCcEEEEe
Confidence 54 332 22222334568899999998777664 567899998753 332 223322 35567788887 47766655
Q ss_pred EcC
Q 002881 290 YDE 292 (871)
Q Consensus 290 ~~d 292 (871)
.-+
T Consensus 285 ~~~ 287 (355)
T 3sre_A 285 HPN 287 (355)
T ss_dssp ESC
T ss_pred cCC
Confidence 433
No 349
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.66 E-value=0.052 Score=61.37 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=87.4
Q ss_pred ccCHHHHhhhCCCCCc-----chhHHHHHHHHhCCChhhhhhccc-----Ccccc------eeeeeccCCHHHHHHHHHH
Q 002881 601 RGDLERANEILPSIPK-----EHHNSVARFLESRGMIEEAIEVAT-----DPDYR------FELAIQLGRLEVAQEIATE 664 (871)
Q Consensus 601 ~~~~~~a~~~l~~i~~-----~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~------f~~~l~l~~~~~A~~~~~~ 664 (871)
.+++++|...+..... .....++..+.+.|..++|+.+.. +|... ...+...|++++|.++.+.
T Consensus 285 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3555556555444322 112456677778888888875532 23221 2445678889999888875
Q ss_pred c-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCC-c----
Q 002881 665 V-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASLAKEQGK-N---- 726 (871)
Q Consensus 665 ~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~~~~~~l~~~~~~~~~-~---- 726 (871)
+ ++...|..+|..+...|+++.|.++|.++-.. ..+..+|...|+.+....+-+.+...+. .
T Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (597)
T 2xpi_A 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444 (597)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence 4 34678888999999999999999988876321 2333345556665555444443333222 1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHH
Q 002881 727 NVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 727 ~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
..-+.++...|++++|+++|.+
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 1123345556666666666554
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.66 E-value=2.1 Score=43.00 Aligned_cols=175 Identities=9% Similarity=0.108 Sum_probs=102.7
Q ss_pred EEEcCCCCEEEEEEcC--------------CeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEe----CCCeEE
Q 002881 21 VDLHPSEPWILASLYS--------------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA----DDMFIR 82 (871)
Q Consensus 21 i~~s~~~~~la~~~~d--------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~ 82 (871)
--++++|.+|+.+..+ +.|+..+++.++... +. ..+ +..|++++++|+-.. ....|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3468899998877653 357777776665333 32 122 237888999999876 344666
Q ss_pred EEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002881 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (871)
Q Consensus 83 iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (871)
..+++... ...+..+.. ..++++++.|+-.+. ...|..-++.++ ....++.+ ... ..+.| ++..|+-.
T Consensus 133 ~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~-~~~~l~~~---~~~-~~~~P-~g~~iy~t 201 (302)
T 3s25_A 133 RIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ-SEALFYDC---NCY-KPVVL-DDTNVYYM 201 (302)
T ss_dssp EEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT-EEEEEECS---CEE-EEEEE-ETTEEEEE
T ss_pred EEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC-CEEEEeCC---Ccc-ceeee-cCCEEEEE
Confidence 66766433 334433332 456778888886665 678888888876 33344332 222 23558 55566555
Q ss_pred ECC--CcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEE--eCCCeEEEEECCC
Q 002881 162 SLD--RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG--SDDHTAKVWDYQT 218 (871)
Q Consensus 162 ~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~--~~dg~i~v~d~~~ 218 (871)
..+ ..|..-++.+... ..+. ...+ ..++|.++ .|.-+ ...+.|...++..
T Consensus 202 ~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~--~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGS--LIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EGGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETT--EEEEEECSSSCEEEEEETTS
T ss_pred EcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCC--EEEEEECCCCcEEEEEECCC
Confidence 543 3576667765543 3332 2233 34777777 34443 2346777777763
No 351
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.61 E-value=0.23 Score=49.02 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 651 QLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
..|++++|.+.+++. +....|..+|..+...|+++.|+++|.++
T Consensus 55 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 55 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444444444331 23445555555555555555555555544
No 352
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.31 Score=49.59 Aligned_cols=191 Identities=8% Similarity=-0.042 Sum_probs=107.8
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEccC-CCCeEEEEEc--CCCCEEEEE--ECCCeEEEEECCCCceEEEEeec----
Q 002881 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVH--PTLPYVLSS--SDDMLIKLWDWEKGWMCTQIFEG---- 140 (871)
Q Consensus 70 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~i~~~--~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~---- 140 (871)
..+++++.||.|.-+|..+|+....++.. ..++....-. +.+..++.+ +.||.|..++..++... ..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccce
Confidence 46889999999999999999999988754 1222221100 112244444 58999999998877322 22211
Q ss_pred CCcceEEEEEec--------CCCCEEEEEECCCcEEEEECCCCCCeEEEecCCC--C-----eeEEEEe---ecCCcCEE
Q 002881 141 HSHYVMQVTFNP--------KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--G-----VNCVDYF---TGGDKPYL 202 (871)
Q Consensus 141 ~~~~v~~~~~~p--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~-----i~~i~~~---~~~~~~~l 202 (871)
...++.. .-.| ..+..+++|+.+|.+...|+.+++.+..+..... . ..|.... .+..+..+
T Consensus 90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1122221 0000 0356889999999999999999999888764321 0 1111111 00111257
Q ss_pred EEEeCCCeEEEEECCCCceEEEec-----CcccC--e-EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002881 203 ITGSDDHTAKVWDYQTKSCVQTLE-----GHTHN--V-SAVCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (871)
Q Consensus 203 ~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~--v-~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (871)
+.+..+..+.+.+ ++|+ ...+. ..... + .....+.++.+ ++++.||.|.-+|..+|+.+.
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 7777777777766 4453 22211 00000 0 00000123555 557889999999999998876
No 353
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.48 E-value=0.2 Score=46.00 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=33.3
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
...|++++|.+..++. ++...|..+|..+...|+++.|+++|.++
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3566777777666542 45677888888888888888888888765
No 354
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.45 E-value=0.032 Score=63.17 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=96.6
Q ss_pred HHHccCHHHHhhhCCCC------CcchhHHHHHHHHhCCChhhhhhccc-----Ccccc------eeeeeccCCHHHHHH
Q 002881 598 LVMRGDLERANEILPSI------PKEHHNSVARFLESRGMIEEAIEVAT-----DPDYR------FELAIQLGRLEVAQE 660 (871)
Q Consensus 598 ~~~~~~~~~a~~~l~~i------~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~------f~~~l~l~~~~~A~~ 660 (871)
....|++++|...+..+ .......++..+.+.|..++|..+.. +|... -.++...|++++|.+
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 34467777765444322 11223556666677788887776532 23221 266788999999999
Q ss_pred HHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-
Q 002881 661 IATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASLAKEQGKN- 726 (871)
Q Consensus 661 ~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~~~~~~l~~~~~~~~~~- 726 (871)
+.+++ .+...|..+|..+...|+++.|+++|.++-.. ..+..+|...|+.+.....-+.+......
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 98754 34678999999999999999999999876322 13344566677766555554444332221
Q ss_pred ----hHHHHHHHHcCCHHHHHHHHHHC
Q 002881 727 ----NVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 727 ----~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
..-+.++...|++++|+++|.++
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22334556677777777777644
No 355
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.34 E-value=0.25 Score=46.10 Aligned_cols=143 Identities=9% Similarity=-0.092 Sum_probs=80.9
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCce------eEEeee-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002881 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM------AKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (871)
Q Consensus 16 ~~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 88 (871)
..++.++|||+|.+.++ .+|.+.-.+..+... -..+-. --..-.++.|.|+|.+.++ .||.|.-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999986555 688777666544211 111110 0011478999999997777 559888776533
Q ss_pred CcE-------EEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc----e-EEEEee-cCCcceEEEEEecCCC
Q 002881 89 MDK-------VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW----M-CTQIFE-GHSHYVMQVTFNPKDT 155 (871)
Q Consensus 89 ~~~-------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~----~-~~~~~~-~~~~~v~~~~~~p~~~ 155 (871)
... ...-..-=..+..+.+.|+|.+.++. |+.+.-+...++. . ....+. ..-+.-..+.|.| ++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~-~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS-VG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT-TS
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC-CC
Confidence 111 11111112467999999999766665 7775544333220 0 011111 2333344566777 66
Q ss_pred CEEEEEECCCcE
Q 002881 156 NTFASASLDRTI 167 (871)
Q Consensus 156 ~~l~~~~~dg~i 167 (871)
.+.++. +|.+
T Consensus 194 ~l~~v~--~g~~ 203 (236)
T 1tl2_A 194 TLFGVQ--GGKF 203 (236)
T ss_dssp CEEEEE--TTEE
T ss_pred cEEEEe--CCeE
Confidence 655554 6643
No 356
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.31 E-value=0.32 Score=45.28 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCC----hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 655 LEVAQEIATEVQS----ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 655 ~~~A~~~~~~~~~----~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
+++|+++++.... ...+..+|..+...|+++.|+++|.++-
T Consensus 49 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 49 FQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444433 2357778888888888888888877653
No 357
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.26 E-value=0.19 Score=47.90 Aligned_cols=100 Identities=19% Similarity=0.131 Sum_probs=68.1
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhc---------
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSL--------- 707 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~--------- 707 (871)
+..|++++|...+++. +++..|..+|..+...|+++.|+.+|.++-.. ..+..+|...
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 4678888888877753 45779999999999999999999999987422 1233345555
Q ss_pred --CCHHHHHHHHHHHHHcC-Cch----HHHHHHHHcCCHHHHHHHHHHC
Q 002881 708 --GDAEGISKLASLAKEQG-KNN----VAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 708 --~~~~~~~~l~~~~~~~~-~~~----~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
|+.+.....-+.+.... +.. .-+.++...|++++|++.|.+.
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66655544444444333 222 2345677888999888887653
No 358
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.22 E-value=0.21 Score=52.57 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 670 KWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 670 ~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.+..+|..+...|+++.|+++|.++
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~a 210 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKA 210 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4555666666666666666666554
No 359
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.20 E-value=0.36 Score=50.22 Aligned_cols=92 Identities=2% Similarity=-0.048 Sum_probs=44.1
Q ss_pred CCCEEEEEeC-CCeEEEEECCC--CcEEE--EEc-cCCCCeEEEEEcCCCCEEEEEEC-C---------CeEEEEECCCC
Q 002881 68 RKQWVVAGAD-DMFIRVYNYNT--MDKVK--VFE-AHTDYIRCVAVHPTLPYVLSSSD-D---------MLIKLWDWEKG 131 (871)
Q Consensus 68 ~~~~l~~~~~-dg~i~iw~~~~--~~~~~--~~~-~~~~~i~~i~~~~~~~~l~~~~~-d---------g~i~iwd~~~~ 131 (871)
++..++.|+. ...+.+||..+ .+... .+. ........+.+ ++..++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5555555554 34688888764 32221 111 11111222222 4556666665 2 46899999876
Q ss_pred ceEEEEeec--CCcceEEEEEecCCCCEEEEEECC
Q 002881 132 WMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLD 164 (871)
Q Consensus 132 ~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~d 164 (871)
.....-.. ....-.++.. . ++.+++.|+.+
T Consensus 97 -~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 -SWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVN 128 (357)
T ss_dssp -EEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCC
T ss_pred -cEEECCCCCCcccccceEEE-E-CCEEEEEeCcC
Confidence 33222111 1111112222 2 57788888754
No 360
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.16 E-value=0.092 Score=46.65 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=30.2
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
+.++|++++|.+..++. +++..|..+|..+...|+++.|+.+|.++
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 34566666666665532 34667777777777777777777777664
No 361
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.05 E-value=0.22 Score=46.52 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=34.6
Q ss_pred eccCCHHHHHH---HHHHcC--ChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 650 IQLGRLEVAQE---IATEVQ--SESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 650 l~l~~~~~A~~---~~~~~~--~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
+..|++++|.+ ++.... ....|..+|..+...|+++.|+++|.++-.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 57889999999 554322 245889999999999999999999987643
No 362
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.04 E-value=0.22 Score=45.80 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=33.0
Q ss_pred eeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.+..+|++++|.+..... ..+..|..+|......++++.|.++|.++
T Consensus 48 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 99 (184)
T 3vtx_A 48 TYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRA 99 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667777777666542 44667778888888888888888877765
No 363
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.04 E-value=4.7 Score=43.36 Aligned_cols=255 Identities=11% Similarity=0.062 Sum_probs=145.1
Q ss_pred EEEEEcCCeEEEEeCCCCceeEEeeecCC-------------------------CE--EEEEEe---CCCCEEEEEeC-C
Q 002881 30 ILASLYSGTVCIWNYQSQTMAKSFEVTEL-------------------------PV--RSAKFV---ARKQWVVAGAD-D 78 (871)
Q Consensus 30 la~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------------------~v--~~~~~~---~~~~~l~~~~~-d 78 (871)
+.+|+.+|.|+|+-+.+++.++.+..... .. ..+.+. .||++|++-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 66788899999999999988887653210 01 123332 26788888875 6
Q ss_pred CeEEEEECCCCcEEEEEc-cCCCCeEEEEEc--CCCCEEEEEEC-------CCeEE---------E---EECCCCceEEE
Q 002881 79 MFIRVYNYNTMDKVKVFE-AHTDYIRCVAVH--PTLPYVLSSSD-------DMLIK---------L---WDWEKGWMCTQ 136 (871)
Q Consensus 79 g~i~iw~~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~-------dg~i~---------i---wd~~~~~~~~~ 136 (871)
..|-..+++..++-+.+. .....+..+.+- |+..|++.++. ||... + .|.++....-+
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 788899999888776665 345568888886 67778888775 33311 0 11111111111
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEECCC----------------------------------------cEEEEECCC--
Q 002881 137 IFEGHSHYVMQVTFNPKDTNTFASASLDR----------------------------------------TIKIWNLGS-- 174 (871)
Q Consensus 137 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------------------------------------~i~i~d~~~-- 174 (871)
+... +..-.+...+ ++.+.++.+.+. .+.+.|.+.
T Consensus 233 v~v~--gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 233 VIVD--GNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEES--SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEcC--CChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 1100 1111223344 445555544321 233444333
Q ss_pred --CCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCC------ce-------EEEecCcccCeEEEEEcC
Q 002881 175 --PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK------SC-------VQTLEGHTHNVSAVCFHP 239 (871)
Q Consensus 175 --~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~------~~-------~~~~~~~~~~v~~i~~~p 239 (871)
+.....+-.-......+..+|+|+. +++.|--+.++.++|+... +. ....+ ..-.....+|.+
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGky-i~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~ 387 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKY-FIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG 387 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCE-EEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCE-EEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC
Confidence 2222222222334467888898873 4445556889999998731 11 22222 233467789999
Q ss_pred CCCEEEEEECCCcEEEEeCCCC----------eEEEEEecCCccEEEEEE------eeCCCeEEEEE
Q 002881 240 ELPIIITGSEDGTVRIWHATTY----------RLENTLNYGLERVWAIGY------MKSSRRIVIGY 290 (871)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~i~~i~~------~~~~~~l~~g~ 290 (871)
+|....+..-|..|.-|++... ..+..+..|-. +-.+.. .|+|++|++..
T Consensus 388 ~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 9965666668999999998642 34555555532 222322 46777777654
No 364
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.03 E-value=0.26 Score=49.59 Aligned_cols=126 Identities=20% Similarity=0.161 Sum_probs=65.4
Q ss_pred HHHHHHhCCChhhhhhcccCcccc------eeeeeccCCHHHHHHHHHHc---CChHHHHHHH----HHHHHcCChhhHH
Q 002881 622 VARFLESRGMIEEAIEVATDPDYR------FELAIQLGRLEVAQEIATEV---QSESKWKQLG----ELAMSTGKLEMAE 688 (871)
Q Consensus 622 ~~~~~~~~~~~~~a~~~~~~~~~~------f~~~l~l~~~~~A~~~~~~~---~~~~~w~~la----~~al~~~~~~~A~ 688 (871)
.+..+...|..++|+.....|... ..+++.+|++++|.+..+.. ++......++ ..+...|+++.|.
T Consensus 107 la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 345556677777777665554321 25566778888877776543 3333333333 3333457788888
Q ss_pred HHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc-----CC---HHHHHHHHHHCCCchHH
Q 002881 689 GCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML-----GK---LEDCLQLLVESNRIPEA 755 (871)
Q Consensus 689 ~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----g~---~~~a~~l~~~~~~~~~A 755 (871)
.+|.++-+. .-.++..+..++......|++..|...+... ++ ...-..++...|++++|
T Consensus 187 ~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 187 YIFQEMADK--------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHHHHHH--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 877765321 1223333444444555555555555444331 11 12223455566666654
No 365
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.96 E-value=0.078 Score=47.10 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=52.8
Q ss_pred eeeccCCHHHHHHHHHHcCC-----hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 002881 648 LAIQLGRLEVAQEIATEVQS-----ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKE 722 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~~~-----~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~ 722 (871)
++...++++.|.+..+..-. +..|-.||..+...|+++.|+++|.++-. ..-.+++....++.+...
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--------~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--------VQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHH
Confidence 34577888999888876432 34677899999999999999999998632 223444445555555555
Q ss_pred cCCchHHHHHH
Q 002881 723 QGKNNVAFLCL 733 (871)
Q Consensus 723 ~~~~~~a~~~~ 733 (871)
.|++..|..++
T Consensus 78 ~~~~~~A~~~~ 88 (150)
T 4ga2_A 78 EENTDKAVECY 88 (150)
T ss_dssp TTCHHHHHHHH
T ss_pred cCchHHHHHHH
Confidence 55555555444
No 366
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.95 E-value=0.25 Score=44.99 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=32.0
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
...|++++|.+..+.. .....|..+|..+...++++.|+++|.++
T Consensus 53 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 53 VKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3566666666666542 34667888888888888888888887765
No 367
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.86 E-value=0.86 Score=52.19 Aligned_cols=195 Identities=10% Similarity=0.086 Sum_probs=104.1
Q ss_pred CCCCEEEEEEcC----CeEEEEeCCCCceeEEe-e-----ec-CCCEEEEEEeC-CCCEEEEEeCC------CeEEEEEC
Q 002881 25 PSEPWILASLYS----GTVCIWNYQSQTMAKSF-E-----VT-ELPVRSAKFVA-RKQWVVAGADD------MFIRVYNY 86 (871)
Q Consensus 25 ~~~~~la~~~~d----g~v~iwd~~~~~~~~~~-~-----~~-~~~v~~~~~~~-~~~~l~~~~~d------g~i~iw~~ 86 (871)
.++..++.|+.+ +.+.+||..+++....- . .. ...-.+++..+ ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 355666666643 46889998887654433 1 11 11122334444 77777787753 35888998
Q ss_pred CCCcEEEEEccCCCC-eEEEEEcCCCCEEEEEECCC--eEEEEECCCCceEEEEee-----cCCcceEEEEEecCCCCEE
Q 002881 87 NTMDKVKVFEAHTDY-IRCVAVHPTLPYVLSSSDDM--LIKLWDWEKGWMCTQIFE-----GHSHYVMQVTFNPKDTNTF 158 (871)
Q Consensus 87 ~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l 158 (871)
.+.+....-...... -.+++...++..++.|+.++ .+.+||..+. .....-. .......++.+...++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~-~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE-IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT-EEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC-ceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 876543321111111 11233323777888887654 6899999886 3333211 1111123355565236677
Q ss_pred EEEEC--C-----CcEEEEECCCCCC-----eEEEec---CCCCeeEEEEeecCCcCEEEEEeC--------CCeEEEEE
Q 002881 159 ASASL--D-----RTIKIWNLGSPDP-----NFTLDA---HQKGVNCVDYFTGGDKPYLITGSD--------DHTAKVWD 215 (871)
Q Consensus 159 ~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~i~~i~~~~~~~~~~l~~~~~--------dg~i~v~d 215 (871)
+.|+. + ..+.+||+.+.+. -..+.. ....-.++....++. +++.|+. ...+.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK--LLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE--EEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE--EEEECCccCCCCCCCCCeEEEEE
Confidence 77765 2 4588999987762 111211 111112223332233 6666664 34689999
Q ss_pred CCCCceE
Q 002881 216 YQTKSCV 222 (871)
Q Consensus 216 ~~~~~~~ 222 (871)
+.+.+-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9876543
No 368
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.72 E-value=8.2e-05 Score=76.95 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=94.3
Q ss_pred ccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------------------------------
Q 002881 651 QLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-------------------------------- 698 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-------------------------------- 698 (871)
..++++.|.++|...+.|..|.+||++.+..+.+..|+++|.|++|..
T Consensus 37 ~i~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~ 116 (624)
T 3lvg_A 37 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 116 (624)
T ss_dssp GGCCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST
T ss_pred hccccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999999999998763
Q ss_pred ----hhHHHHHhcCCH------------HHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002881 699 ----GLLLLYSSLGDA------------EGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (871)
Q Consensus 699 ----~l~~l~~~~~~~------------~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~ 762 (871)
.|.+.|...+.. ..++.+++.+..+|.+..|..+|...+++.+-.-.++.++.+..|++-||+-
T Consensus 117 ~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 117 YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp TTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred ccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222233332221 1357888899999999999999988899999899999999999999998876
Q ss_pred CC
Q 002881 763 LP 764 (871)
Q Consensus 763 ~~ 764 (871)
..
T Consensus 197 ns 198 (624)
T 3lvg_A 197 NS 198 (624)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 369
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.70 E-value=0.25 Score=48.05 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=35.7
Q ss_pred eeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
.+...|++++|.+++++. .....|..+|..+...|+++.|+++|.++-.
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345677777777776542 3466788888888888888888888887754
No 370
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.69 E-value=0.12 Score=44.14 Aligned_cols=44 Identities=9% Similarity=0.010 Sum_probs=21.2
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHH
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQ 693 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~ 693 (871)
...|++++|.+...+. .++..|..+|..+...|+++.|+++|.+
T Consensus 24 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 24 FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 3445555555544321 2244555555555555555555554444
No 371
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.68 E-value=0.21 Score=48.21 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=26.7
Q ss_pred eeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
++..+|++++|.+++++. ..+..|..+|..+...|+++.|+++|.++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344556666666555432 23455666666666666666666665554
No 372
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.66 E-value=0.54 Score=50.53 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=32.4
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
+...|++++|.++.+.. .+...|..+|..+...|+++.|+++|.++
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55677777777777643 34566777777777777777777777765
No 373
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.62 E-value=0.1 Score=53.30 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=87.5
Q ss_pred HHHHHccCHHHHhhhCCCC----Ccc--hhHHHHHHHHhCCChhhhhhcc-----cCcccc---e---eeeeccC-CHHH
Q 002881 596 KTLVMRGDLERANEILPSI----PKE--HHNSVARFLESRGMIEEAIEVA-----TDPDYR---F---ELAIQLG-RLEV 657 (871)
Q Consensus 596 ~~~~~~~~~~~a~~~l~~i----~~~--~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~---f---~~~l~l~-~~~~ 657 (871)
......++++.|...+..+ +.. .....+..+...|..++|+... .+|... + ..+..+| ++++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHH
Confidence 3445578888875544321 111 1123445555667777666432 223221 1 4456777 8888
Q ss_pred HHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 658 AQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 658 A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
|.+..+.. .....|..+|..+...|+++.|+++|.++-... .+..+|...|+.+.....-+.+....
T Consensus 110 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 110 ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88887653 235678889999999999999999888764221 23334555666555544444443332
Q ss_pred Cch-----HHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNN-----VAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~-----~a~~~~~~~g~~~~a~~l~~~ 748 (871)
... .-+.++...|++++|++.|.+
T Consensus 190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 211 223445566677776666653
No 374
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.60 E-value=0.16 Score=43.24 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=33.4
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
...|++++|.++.+.. .+...|..+|..+...++++.|+++|.++
T Consensus 12 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 61 (136)
T 2fo7_A 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61 (136)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3556777777766542 34667888888888889999998888775
No 375
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.59 E-value=0.13 Score=54.19 Aligned_cols=25 Identities=8% Similarity=-0.118 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 670 KWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 670 ~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.+..+|..+...|+++.|+++|.++
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~a 208 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAA 208 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666666666666666666554
No 376
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.58 E-value=0.25 Score=43.65 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=54.1
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
...|++++|.+..+.. .++..|..+|..+...|+++.|+++|.++-.. .-.++...-
T Consensus 32 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~---------- 93 (148)
T 2vgx_A 32 YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--------DIXEPRFPF---------- 93 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHH----------
T ss_pred HHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCchHHH----------
Confidence 4677888887777643 45778999999999999999999999885321 112222221
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
..+.++...|++++|++.|.+
T Consensus 94 ---~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 94 ---HAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCHHHHHHHHHH
Confidence 224456678888888887753
No 377
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.56 E-value=0.38 Score=48.13 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=42.4
Q ss_pred eeeeccCCHHHHHHHHHHc-------CChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 647 ELAIQLGRLEVAQEIATEV-------QSESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-------~~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
..+...|++++|++.+.+. .+......+++.++..|+.+.|.+.+.++..
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445679999999999987 6677889999999999999999999976543
No 378
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.48 E-value=0.32 Score=42.43 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=54.8
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
+..|++++|.+..+.. .++..|..+|..+...|+++.|+++|.++-... ..++....
T Consensus 29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~---------- 90 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--------INEPRFPF---------- 90 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHH----------
T ss_pred HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHH----------
Confidence 4678888888877653 467889999999999999999999998753221 12222221
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
..+.++...|++++|++.|.+
T Consensus 91 ---~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 91 ---HAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCHHHHHHHHHH
Confidence 234456678888888888753
No 379
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.43 E-value=0.25 Score=48.04 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHhCCChhhhhhcc-----cCcccc------eeeeeccCCHHHHHHHHHHcCC-------hHHHHHHHHHHHHcC
Q 002881 621 SVARFLESRGMIEEAIEVA-----TDPDYR------FELAIQLGRLEVAQEIATEVQS-------ESKWKQLGELAMSTG 682 (871)
Q Consensus 621 ~~~~~~~~~~~~~~a~~~~-----~~~~~~------f~~~l~l~~~~~A~~~~~~~~~-------~~~w~~la~~al~~~ 682 (871)
.++..+...|..++|+... .+|... ..++...|++++|.++++..-. ...|..+|..+...|
T Consensus 76 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 76 ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 3444555566666655432 122111 1445566777777776665321 345666777777777
Q ss_pred ChhhHHHHHHHc
Q 002881 683 KLEMAEGCMKQA 694 (871)
Q Consensus 683 ~~~~A~~~y~~~ 694 (871)
+++.|+++|.++
T Consensus 156 ~~~~A~~~~~~~ 167 (252)
T 2ho1_A 156 KPAQAKEYFEKS 167 (252)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777766654
No 380
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.41 E-value=0.21 Score=47.89 Aligned_cols=27 Identities=19% Similarity=0.022 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
...|..+|..+...|+++.|+++|.++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~a 68 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIA 68 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 344555666666666666666665554
No 381
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.35 E-value=0.15 Score=46.65 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=33.8
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
.+..|++++|.+.++.. .+...|..+|..+...|+++.|+++|.++-
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 71 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL 71 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777666542 457899999999999999999999998863
No 382
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.33 E-value=2.1 Score=40.00 Aligned_cols=174 Identities=9% Similarity=0.007 Sum_probs=92.3
Q ss_pred CCEEEEEECCCeEEEEECCCCc------eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCe------
Q 002881 111 LPYVLSSSDDMLIKLWDWEKGW------MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN------ 178 (871)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~------ 178 (871)
...|++...| +++.=...++. ...++=.+.=..+..++|+| ++.+.++ .+|.+.-.+..+....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 3456666666 66665554432 11222111123577999999 7776666 6787777665442221
Q ss_pred EEEe-cCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCce-------EEEecCcccCeEEEEEcCCCCEEEEEECC
Q 002881 179 FTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-------VQTLEGHTHNVSAVCFHPELPIIITGSED 250 (871)
Q Consensus 179 ~~~~-~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~i~~~p~~~~l~~~~~d 250 (871)
..+- ..-.....+.+.|++. |.++ .||.|+-++..+... ...-..--..+..+.+.|+|.+.++. |
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~---LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGY---LYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSC---EEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred cEecccccccceEEEECCCCC---EEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence 1111 0111236777877775 4444 569998887643211 11111112467999999999877666 7
Q ss_pred CcEEEEeCCCCe------EEEEEe-cCCccEEEEEEeeCCCeEEEEEcCCeEE
Q 002881 251 GTVRIWHATTYR------LENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (871)
Q Consensus 251 g~v~iwd~~~~~------~~~~~~-~~~~~i~~i~~~~~~~~l~~g~~dg~i~ 296 (871)
|.++-+...++. ....+. ..-.....+.|.+++...++. +|.+.
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 776543322111 111111 222234446677777766655 66443
No 383
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.33 E-value=0.088 Score=45.15 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=21.3
Q ss_pred ccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHH
Q 002881 651 QLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQ 693 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~ 693 (871)
..|++++|.+...+. ++...|..+|..+...|+++.|+++|.+
T Consensus 20 ~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 20 KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 445555555554421 2234455555555555555555555444
No 384
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.32 E-value=0.11 Score=56.83 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=42.0
Q ss_pred eeeeccCCH-HHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002881 647 ELAIQLGRL-EVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (871)
Q Consensus 647 ~~~l~l~~~-~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (871)
..+..+|++ ++|.+.+++. +....|..||..+...|+++.|+++|.++-..
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445678999 9999888753 44678999999999999999999999987544
No 385
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.30 E-value=0.36 Score=43.35 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=52.8
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
...|++++|.+..++. .+...|..+|..+...|+++.|+++|.++-... ..+......
T Consensus 22 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~--------- 84 (164)
T 3sz7_A 22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--------PKYSKAWSR--------- 84 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHH---------
T ss_pred HHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHH---------
Confidence 4667777777777642 457789999999999999999999888753221 222222222
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
-+.++..+|++++|++.|.+
T Consensus 85 ----lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 85 ----LGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp ----HHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHHHccCHHHHHHHHHH
Confidence 23455677888888887763
No 386
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.29 E-value=0.53 Score=47.82 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=80.7
Q ss_pred HHHHHHHhCCChhhhhhcc-----cCcccc------eeeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcC-C
Q 002881 621 SVARFLESRGMIEEAIEVA-----TDPDYR------FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTG-K 683 (871)
Q Consensus 621 ~~~~~~~~~~~~~~a~~~~-----~~~~~~------f~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~-~ 683 (871)
..+..+...|.+++|+... .+|... ......+|++++|.+++++. .++..|..+|..+...| +
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh
Confidence 3344555567777777542 233221 25567899999999988753 45779999999999999 9
Q ss_pred hhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHHHHHHHHH
Q 002881 684 LEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 684 ~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
++.|+++|.++-... .+..+|...|+.+.....-+.+...... ...+.++...|++++|+++|.+
T Consensus 107 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999875332 2333455566665544444433332211 1233445566677666666554
No 387
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.13 E-value=0.15 Score=43.14 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=54.1
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQ 723 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~ 723 (871)
++..|++++|.+.++.. ++...|..+|..+...|+++.|+.+|.++-.. .-.+.+....++
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~la------ 92 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALA------ 92 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH------
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH------
Confidence 35778888888877653 46789999999999999999999998875322 122222222222
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHH
Q 002881 724 GKNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 724 ~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
.++...|++++|++.|.+
T Consensus 93 -------~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 93 -------VSHTNEHNANAALASLRA 110 (121)
T ss_dssp -------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHcCCHHHHHHHHHH
Confidence 334466777777777654
No 388
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.13 E-value=0.35 Score=50.87 Aligned_cols=75 Identities=27% Similarity=0.334 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCChhhhhhcc-----cCcccc------eeeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCC
Q 002881 620 NSVARFLESRGMIEEAIEVA-----TDPDYR------FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (871)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~-----~~~~~~------f~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~ 683 (871)
..++..+...|..++|+... .+|+.. -.+...+|++++|.++.++. +....|..+|..+...|+
T Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 105 INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34445555556655554332 123221 14455667777777666542 234566677777777777
Q ss_pred hhhHHHHHHHc
Q 002881 684 LEMAEGCMKQA 694 (871)
Q Consensus 684 ~~~A~~~y~~~ 694 (871)
++.|+++|.++
T Consensus 185 ~~~A~~~~~~a 195 (388)
T 1w3b_A 185 IWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 389
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.12 E-value=0.14 Score=52.02 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHH
Q 002881 670 KWKQLGELAMSTGKLEMAEGCMK 692 (871)
Q Consensus 670 ~w~~la~~al~~~~~~~A~~~y~ 692 (871)
.+..+|..+...|+++.|+++|.
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~ 100 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIE 100 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 34444444444444444444443
No 390
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.12 E-value=0.28 Score=41.79 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..|+.+|..+.+.|+++.|+++|.++-
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al 40 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAV 40 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 368899999999999999999999873
No 391
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.10 E-value=0.52 Score=46.55 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHH---cCChHHHHHHHHHHHH----cCChhhHHHHHHHcC
Q 002881 652 LGRLEVAQEIATE---VQSESKWKQLGELAMS----TGKLEMAEGCMKQAM 695 (871)
Q Consensus 652 l~~~~~A~~~~~~---~~~~~~w~~la~~al~----~~~~~~A~~~y~~~~ 695 (871)
.+++++|.+..++ ..++..|..||..+.. .++++.|+++|.++-
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC 105 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence 6777777766653 3566677777777777 777777777777653
No 392
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.09 E-value=0.26 Score=50.01 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=15.6
Q ss_pred HHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcC
Q 002881 730 FLCLFMLGKLEDCLQLLVESNRIPEAALMARSYL 763 (871)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~ 763 (871)
+.++...|++++|++.|. +|+.+.+...
T Consensus 162 g~~~~~~g~~~~A~~~~~------~al~~~~~~~ 189 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQ------KEKSMYKEME 189 (307)
T ss_dssp HHHHHHTTCHHHHHHHHH------HHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHH------HHHHHHHHcC
Confidence 344556666666666654 4455554443
No 393
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.98 E-value=0.32 Score=44.37 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=41.7
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (871)
++..|++++|...+++. +++..|..+|..+...|+++.|+++|.++-..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 35788999999988753 56789999999999999999999999988644
No 394
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.94 E-value=0.22 Score=51.80 Aligned_cols=48 Identities=6% Similarity=-0.072 Sum_probs=34.2
Q ss_pred eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
..+..+|++++|.+.++.. +....|..+|..+...|+++.|+++|.++
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445677777777777642 34667888888888888888888888765
No 395
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.93 E-value=0.89 Score=44.82 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=52.1
Q ss_pred HHHHHHHHh----CCChhhhhhcc------cCcccce---eeeec----cCCHHHHHHHHHH---cCChHHHHHHHHHHH
Q 002881 620 NSVARFLES----RGMIEEAIEVA------TDPDYRF---ELAIQ----LGRLEVAQEIATE---VQSESKWKQLGELAM 679 (871)
Q Consensus 620 ~~~~~~~~~----~~~~~~a~~~~------~~~~~~f---~~~l~----l~~~~~A~~~~~~---~~~~~~w~~la~~al 679 (871)
..+...+.. .+..++|+... .++...+ .++.. .+++++|.+..++ .+++..|..||..+.
T Consensus 42 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 42 FNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 344555555 67777665432 1222222 34455 8889988887764 467788889999999
Q ss_pred H----cCChhhHHHHHHHcCC
Q 002881 680 S----TGKLEMAEGCMKQAMD 696 (871)
Q Consensus 680 ~----~~~~~~A~~~y~~~~d 696 (871)
. .++++.|+++|.++-+
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHh
Confidence 8 8999999998887643
No 396
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.92 E-value=0.39 Score=45.22 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=34.4
Q ss_pred eccCCHHHHHHHHHHcC--ChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEVQ--SESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~~--~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|++++|.+..++.- ++..|..+|..+...|+++.|+++|.++-
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777777776542 45678888888888888888888887753
No 397
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.76 E-value=0.72 Score=46.22 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=33.2
Q ss_pred eccCCHHHHHHHH-------HHcCC----hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIA-------TEVQS----ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~-------~~~~~----~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..+|++++|.+.. ....+ ...|..+|..+...|+++.|+.+|.++-
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455555555544 33333 3478899999999999999999998763
No 398
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.74 E-value=0.5 Score=49.62 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=76.6
Q ss_pred HHHHHHHHhCCChhhhhhcc-----cCcccc------eeeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCC
Q 002881 620 NSVARFLESRGMIEEAIEVA-----TDPDYR------FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (871)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~-----~~~~~~------f~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~ 683 (871)
..+...+...|..++|.... .+|... -......+++++|.+..++. ++...|..+|..+...|+
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 45566667777777766442 233322 25567889999998887642 346788999999999999
Q ss_pred hhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHHHHHHHHHC
Q 002881 684 LEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 684 ~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
++.|+++|.++-... .+..++...|+.+.....-+.+...... ..-+.++...|++++|+++|.+.
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998864221 2233444455554444333333222111 11223344455666666655543
No 399
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.74 E-value=0.14 Score=55.63 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=64.6
Q ss_pred eccCCHHHHHHHHHHc----------CC---hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHH
Q 002881 650 IQLGRLEVAQEIATEV----------QS---ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKL 716 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~----------~~---~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l 716 (871)
...|++++|..++++. ++ -.....||..+..+|+++.|+.+|.++-....-. .-...++....+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~---lG~~Hp~~a~~l 396 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL---YHHNNAQLGMAV 396 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---SCTTCHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---cCCCCHHHHHHH
Confidence 4678888888887642 22 2367889999999999999999998763321100 012234444444
Q ss_pred HHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHH-HHHHhcCCch
Q 002881 717 ASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAA-LMARSYLPSK 766 (871)
Q Consensus 717 ~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~-~la~~~~~~~ 766 (871)
.+++ .+|...|++++|+.+|. +|+ -+.+.+++++
T Consensus 397 ~nLa----------~~~~~~G~~~eA~~~~~------~Al~i~~~~lG~~H 431 (490)
T 3n71_A 397 MRAG----------LTNWHAGHIEVGHGMIC------KAYAILLVTHGPSH 431 (490)
T ss_dssp HHHH----------HHHHHTTCHHHHHHHHH------HHHHHHHHHTCTTS
T ss_pred HHHH----------HHHHHCCCHHHHHHHHH------HHHHHHHHHhCCCC
Confidence 3333 34667899999999987 556 3445677765
No 400
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.70 E-value=7.8 Score=40.51 Aligned_cols=213 Identities=6% Similarity=-0.073 Sum_probs=105.5
Q ss_pred CEEEEEEcCCeEEEEeCCC-CceeEEe--eecCCCEEEEEEeC-CCCEEEEEeCCC----eEEEEECCCCcEEEEEcc--
Q 002881 28 PWILASLYSGTVCIWNYQS-QTMAKSF--EVTELPVRSAKFVA-RKQWVVAGADDM----FIRVYNYNTMDKVKVFEA-- 97 (871)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~-- 97 (871)
..|.+|...| +.+++... +..-... ......|.++++.| +...|.+++..| .|... .+.++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence 3677888777 55555333 2222222 12345799999998 334455555544 34332 233332222211
Q ss_pred ------------CCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCceEEEEee------------------cCCcce
Q 002881 98 ------------HTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQIFE------------------GHSHYV 145 (871)
Q Consensus 98 ------------~~~~i~~i~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~~v 145 (871)
+...|.++++.|. ...|.+++..+.|...+-... ....... .....+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~-tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGA-SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTS-BCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCC-CeEECcCccCCccccccccccccCCCCCCce
Confidence 1124778999872 456777766676665543222 2222211 112357
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecC-------------CCCeeEEEEeecCCcCEEEEEeCCCeEE
Q 002881 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH-------------QKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (871)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~~~~l~~~~~dg~i~ 212 (871)
.++.++|.+.+.+.++..++.|...+ ..++.-..+... ...+.++.+.|...+ .+.++...+ |.
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~-~l~vg~~~g-l~ 256 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPD-ILYQQNHCG-IY 256 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTT-EEEEEETTE-EE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCC-EEEEEcCCe-EE
Confidence 88999885555566665555554443 223222222110 123778888875333 566666544 44
Q ss_pred EEECCCCceEEEecC--cc---cCeEEEEEcCC-CCEEEEE
Q 002881 213 VWDYQTKSCVQTLEG--HT---HNVSAVCFHPE-LPIIITG 247 (871)
Q Consensus 213 v~d~~~~~~~~~~~~--~~---~~v~~i~~~p~-~~~l~~~ 247 (871)
..+ ..++....+.. .. ..+.++.++|. ...+.++
T Consensus 257 ~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 257 RMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 443 22443333321 11 23567888763 3344444
No 401
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.59 E-value=0.25 Score=48.79 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=26.2
Q ss_pred eeeccCCHHHHHHHHHHc----CChH----HHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 648 LAIQLGRLEVAQEIATEV----QSES----KWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~----~~~~----~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.+..+|++++|.+.++.. +++. .|..+|..+...|+++.|+++|.++
T Consensus 46 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 445566666666665532 1111 2566666666666666666666554
No 402
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.53 E-value=0.27 Score=51.20 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=24.9
Q ss_pred eeeccCCHHHHHHHHHHc-----C--ChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 648 LAIQLGRLEVAQEIATEV-----Q--SESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-----~--~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.+..+|++++|.++.++. . ++..|..+|..+...|+++.|+++|.++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555432 1 3455666666666666666666666554
No 403
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.50 E-value=0.57 Score=47.01 Aligned_cols=47 Identities=17% Similarity=0.036 Sum_probs=33.7
Q ss_pred eeccCCHHHHHHHHH-------HcCC----hHHHHHHHHHHHHc-CChhhHHHHHHHcC
Q 002881 649 AIQLGRLEVAQEIAT-------EVQS----ESKWKQLGELAMST-GKLEMAEGCMKQAM 695 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~-------~~~~----~~~w~~la~~al~~-~~~~~A~~~y~~~~ 695 (871)
+..+|++++|.+..+ ...+ ...|..+|..+... |+++.|+++|.++-
T Consensus 87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 345566666655443 3333 24788999999997 99999999999874
No 404
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.41 Score=40.48 Aligned_cols=78 Identities=9% Similarity=0.007 Sum_probs=52.1
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
...|++++|.+...+. .++..|..+|..+...|+++.|+++|.++-..+ ..+......
T Consensus 15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~--------- 77 (126)
T 3upv_A 15 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIR--------- 77 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHH---------
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHH---------
Confidence 4667777777776542 456789999999999999999999888753221 122222222
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
-+.++...|++++|++.|.+
T Consensus 78 ----lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 78 ----KATAQIAVKEYASALETLDA 97 (126)
T ss_dssp ----HHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHhCHHHHHHHHHH
Confidence 23455677888888877763
No 405
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=93.34 E-value=1.1 Score=46.92 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=34.4
Q ss_pred eeccCCHHHHHHHHH-------HcCCh----HHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 649 AIQLGRLEVAQEIAT-------EVQSE----SKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~-------~~~~~----~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
+..+|++++|.+..+ ...++ ..+..+|..+...|+++.|+++|.++-
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445666666666554 33332 378889999999999999999998774
No 406
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.29 E-value=1.8 Score=43.04 Aligned_cols=222 Identities=14% Similarity=0.050 Sum_probs=113.8
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEeCCCCceeEEeeecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Q 002881 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (871)
Q Consensus 17 ~v~~i~~s~~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 96 (871)
.|..++-..... ++. . ||.|..|-......+-.-......|..++-.... .++. . ||.|..|-.+....+..-.
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 577777654332 333 4 8999999754421111111122356666654332 2333 4 8999999765422211111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002881 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (871)
Q Consensus 97 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (871)
.-...|..++.... +.+.-+ ||.|..|-.....++- ........|..++... ...++ -. ||.|..|-.....
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~--~~~~~-l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGV--YTALA-VK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECS--SEEEE-EE-TTEEEEEECCTTS
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEccc--CEEEE-EE-CCEEEEecCCCCC
Confidence 11346777776654 333334 8999999765432221 1111234577776542 33333 34 7999999875432
Q ss_pred CeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEE
Q 002881 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (871)
Q Consensus 177 ~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iw 256 (871)
...........|..++. .... .++. .+|.|+.|-......+-.-......|..++..... .++.. ||.|..|
T Consensus 171 qlg~p~~~~~~v~~i~~--G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAG--GIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEE--CSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEEE
T ss_pred CCCCceecCCCeEEEEe--cCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEEe
Confidence 22111111234555543 2221 3444 59999999765421111111123457777765544 33333 8999999
Q ss_pred eCCC
Q 002881 257 HATT 260 (871)
Q Consensus 257 d~~~ 260 (871)
-...
T Consensus 243 G~n~ 246 (282)
T 3qhy_B 243 GSSR 246 (282)
T ss_dssp STTC
T ss_pred cCCC
Confidence 6544
No 407
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.23 E-value=0.63 Score=43.95 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 651 QLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
..|++++|.+..+.. .....|..+|..+...|+++.|.++|.++
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 445555555544321 23455666666666666666666666654
No 408
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.18 E-value=0.66 Score=41.01 Aligned_cols=83 Identities=12% Similarity=-0.046 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc-----CC---H
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML-----GK---L 739 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----g~---~ 739 (871)
...|..+|..+...|+++.|+++|.++- ...-.++..+..++.+....|++..|..+|.+. ++ +
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al--------~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLC--------IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 4578999999999999999999999853 223455666777778888888888877776543 11 3
Q ss_pred HHHHHHHHHCCCchHHHHH
Q 002881 740 EDCLQLLVESNRIPEAALM 758 (871)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~l 758 (871)
-.-..+|..+|++++|+..
T Consensus 108 ~~lg~~~~~lg~~~eA~~~ 126 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKEC 126 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 3445667788888888743
No 409
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.11 E-value=1.4 Score=42.26 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=35.8
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..+|++++|.+.+++. .....|..+|..+...|+++.|+++|.++-
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4567777777766542 356789999999999999999999998763
No 410
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.04 E-value=2.6 Score=48.11 Aligned_cols=194 Identities=10% Similarity=0.069 Sum_probs=101.5
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCcEEEEE-c-------cCCCCeEEEEEcCCCCEEEEEECC------CeEEEEEC
Q 002881 67 ARKQWVVAGADD----MFIRVYNYNTMDKVKVF-E-------AHTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDW 128 (871)
Q Consensus 67 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~-~-------~~~~~i~~i~~~~~~~~l~~~~~d------g~i~iwd~ 128 (871)
.++..++.|+.+ ..+.+||..+++....- . .....-..+.+..++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 566777777753 46888998877654433 1 111122233332266677777653 35888998
Q ss_pred CCCceEEEEeecC-CcceEEEEEecCCCCEEEEEECCC--cEEEEECCCCCCeEEEe-----cCCCCeeEEEEeecCCcC
Q 002881 129 EKGWMCTQIFEGH-SHYVMQVTFNPKDTNTFASASLDR--TIKIWNLGSPDPNFTLD-----AHQKGVNCVDYFTGGDKP 200 (871)
Q Consensus 129 ~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~~ 200 (871)
.+. .....-... ...-.+++... ++.+++.|+.++ .+.+||..+.+-...-. .......++.+....+.
T Consensus 476 ~t~-~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~- 552 (695)
T 2zwa_A 476 KTR-EWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ- 552 (695)
T ss_dssp TTT-EEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE-
T ss_pred CCC-cEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE-
Confidence 876 322221111 11111222322 577888887655 68999987654221110 01111222444333222
Q ss_pred EEEEEeC--C-----CeEEEEECCCCce-----EEEecC----cccCeEEEEEcCCCCEEEEEECC--------CcEEEE
Q 002881 201 YLITGSD--D-----HTAKVWDYQTKSC-----VQTLEG----HTHNVSAVCFHPELPIIITGSED--------GTVRIW 256 (871)
Q Consensus 201 ~l~~~~~--d-----g~i~v~d~~~~~~-----~~~~~~----~~~~v~~i~~~p~~~~l~~~~~d--------g~v~iw 256 (871)
+++.|+. + +.+.+||+.+... ...+.. ..... +++...++.+++.||.+ ..+.+|
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 5666654 2 4688999987761 122211 11112 23333336677777743 458999
Q ss_pred eCCCCeEE
Q 002881 257 HATTYRLE 264 (871)
Q Consensus 257 d~~~~~~~ 264 (871)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 98877643
No 411
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.00 E-value=0.72 Score=41.27 Aligned_cols=58 Identities=21% Similarity=0.154 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHH
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCL 733 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 733 (871)
...|..+|..+...|+++.|+++|.++-.. ...+......++.+....|++..|...+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 68 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDA 68 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 347899999999999999999999986322 1233444455555555555555554443
No 412
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=92.93 E-value=0.49 Score=42.18 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=35.4
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|++++|.+..... .+...|..+|..+...|+++.|+++|.++-
T Consensus 24 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567777777766542 356788999999999999999999888754
No 413
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=92.86 E-value=0.56 Score=50.40 Aligned_cols=76 Identities=25% Similarity=0.346 Sum_probs=56.6
Q ss_pred HHHHHHHhCCChhhhhhccc-----Ccccc------eeeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCh
Q 002881 621 SVARFLESRGMIEEAIEVAT-----DPDYR------FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKL 684 (871)
Q Consensus 621 ~~~~~~~~~~~~~~a~~~~~-----~~~~~------f~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~ 684 (871)
.++..+...|..++|+.... +|... -..+..+|++++|.+.+++. +....|..+|..+...|++
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 34455566777777765432 33322 25577899999999988753 4477899999999999999
Q ss_pred hhHHHHHHHcCC
Q 002881 685 EMAEGCMKQAMD 696 (871)
Q Consensus 685 ~~A~~~y~~~~d 696 (871)
+.|+++|.++-.
T Consensus 111 ~~A~~~~~~~~~ 122 (450)
T 2y4t_A 111 DEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998854
No 414
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.85 E-value=0.84 Score=36.72 Aligned_cols=72 Identities=8% Similarity=-0.028 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHH
Q 002881 666 QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQL 745 (871)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l 745 (871)
+++..|-.+|..+...|+++.|+++|.++-... ..+..... .-+.++...|++++|++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~-------------~lg~~~~~~g~~~~A~~~ 63 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD--------PDYVGTYY-------------HLGKLYERLDRTDDAIDT 63 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHH-------------HHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHH-------------HHHHHHHHcCCHHHHHHH
Confidence 456789999999999999999999888763221 12211112 224456678888888888
Q ss_pred HHHCCCchHHHHHHHhcCC
Q 002881 746 LVESNRIPEAALMARSYLP 764 (871)
Q Consensus 746 ~~~~~~~~~A~~la~~~~~ 764 (871)
|. +|++++.....
T Consensus 64 ~~------~al~l~~~~~~ 76 (100)
T 3ma5_A 64 YA------QGIEVAREEGT 76 (100)
T ss_dssp HH------HHHHHHHHHSC
T ss_pred HH------HHHhhhhcCCc
Confidence 76 46666666554
No 415
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.83 E-value=0.95 Score=45.80 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=37.5
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
....|++++|.++++.. .+...|..+|..+...|+++.|+++|.++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 198 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66778888888887653 34678889999999999999999988875
No 416
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.76 E-value=0.79 Score=45.82 Aligned_cols=47 Identities=17% Similarity=0.040 Sum_probs=39.7
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
+..|++++|.+++++. +++..|..||..++..|+++.|+++|.++-.
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 4678888888877753 4577899999999999999999999998854
No 417
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.15 Score=49.80 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=59.5
Q ss_pred eeeccCCHHHHHHHHHHcC-----C-------hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHH
Q 002881 648 LAIQLGRLEVAQEIATEVQ-----S-------ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISK 715 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~~-----~-------~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~ 715 (871)
.+..+|++++|.+.++..- . ...|..+|..+...|+++.|+++|.++-....-..++...|+.+....
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELK 126 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHH
Confidence 3456777777777765421 1 578999999999999999999999988665443444444444433333
Q ss_pred HHHHHHHcCC-----chHHHHHHHHcCCHHHHHHHHHH
Q 002881 716 LASLAKEQGK-----NNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 716 l~~~~~~~~~-----~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
..+.+..... ....+.++...|++++|++.|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3222222111 11223344455566665555543
No 418
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=92.66 E-value=0.67 Score=42.00 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=37.3
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|++++|.+.++.. .....|..+|..+...|+++.|.++|.++-
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667788888877654 346789999999999999999999998764
No 419
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=92.66 E-value=0.99 Score=42.53 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=27.3
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHc-CChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMST-GKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~-~~~~~A~~~y~~~~ 695 (871)
...|++++|.+.++.. .....|..+|..+... |+++.|+++|.++-
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3555566665555432 2455666666666666 66666666666653
No 420
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.55 E-value=13 Score=39.75 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=61.8
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--EEcc------CCCCeEEEEEcCC---CCEEEEEEC-------
Q 002881 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK--VFEA------HTDYIRCVAVHPT---LPYVLSSSD------- 119 (871)
Q Consensus 58 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~------~~~~i~~i~~~~~---~~~l~~~~~------- 119 (871)
.....|+|.|+|+.+++-...+.|.+++..+++... .+.. .......|+|+|+ +..|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 356799999999866665444578888765554432 2221 2345779999996 556655542
Q ss_pred ------CCeEEEEECCCCc----eEEEEe---e-cCCcceEEEEEecCCCCEEEEEE
Q 002881 120 ------DMLIKLWDWEKGW----MCTQIF---E-GHSHYVMQVTFNPKDTNTFASAS 162 (871)
Q Consensus 120 ------dg~i~iwd~~~~~----~~~~~~---~-~~~~~v~~~~~~p~~~~~l~~~~ 162 (871)
...|.-++..... ....++ . ...+....+.|.| ++.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence 2356666654220 111122 1 2234578999999 666666544
No 421
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=92.50 E-value=1.5 Score=43.66 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=54.0
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
...|++++|.+.++.. ++...|..+|..+...|+++.|+++|.++-.... ++.....
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~---------- 76 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--------QSVKAHF---------- 76 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------TCHHHHH----------
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHH----------
Confidence 3667777777777642 4678899999999999999999999998765432 2222122
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
.-+.++...|++++|++.|.+
T Consensus 77 ---~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 77 ---FLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCHHHHHHHHHH
Confidence 223445567888888877763
No 422
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=92.49 E-value=0.5 Score=38.46 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=36.8
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|++++|.+..+.. .....|..+|..+...++++.|+++|.++-
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4677888887777542 456789999999999999999999888763
No 423
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.49 E-value=13 Score=39.71 Aligned_cols=231 Identities=9% Similarity=-0.024 Sum_probs=115.5
Q ss_pred CCEEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCc---eeEEee---------ecCCCEEEEEEeCC---CCEEEEE-eC-
Q 002881 16 ERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT---MAKSFE---------VTELPVRSAKFVAR---KQWVVAG-AD- 77 (871)
Q Consensus 16 ~~v~~i~~s~~~~-~la~~~~dg~v~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~l~~~-~~- 77 (871)
...+.|+|.|+|. .|+++...|.|++++..... .+..+. ........|+|+|+ ..+|.+. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3568999999996 57777789999999754321 222221 01346788999996 3344433 21
Q ss_pred -C----------CeEEEEECCC----------CcEEEEEc--cCCCCeEEEEEcCCCCEEEEEECC--------------
Q 002881 78 -D----------MFIRVYNYNT----------MDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDD-------------- 120 (871)
Q Consensus 78 -d----------g~i~iw~~~~----------~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d-------------- 120 (871)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1454566542 12222222 122346789999999766665543
Q ss_pred ---CeEEEEECCCCc-------------------eEEEEeecCCcceEEEEEecCCC----C-EEEEEECCC----cEEE
Q 002881 121 ---MLIKLWDWEKGW-------------------MCTQIFEGHSHYVMQVTFNPKDT----N-TFASASLDR----TIKI 169 (871)
Q Consensus 121 ---g~i~iwd~~~~~-------------------~~~~~~~~~~~~v~~~~~~p~~~----~-~l~~~~~dg----~i~i 169 (871)
|.|.-.|.+... .....-.+|.. ...++|+|..+ . .+..+...| .-.|
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 234434444310 00112223433 45789998432 3 344332212 1223
Q ss_pred EECCCC------CCeEEEecCC-CCeeEEEEeecC-----CcCEEEEEeCCCeEEEEECCCCc---eEEEe-c-------
Q 002881 170 WNLGSP------DPNFTLDAHQ-KGVNCVDYFTGG-----DKPYLITGSDDHTAKVWDYQTKS---CVQTL-E------- 226 (871)
Q Consensus 170 ~d~~~~------~~~~~~~~~~-~~i~~i~~~~~~-----~~~~l~~~~~dg~i~v~d~~~~~---~~~~~-~------- 226 (871)
..+..+ .++..+..+. ..+..+.+.... .+. ++++...+.|....+.... ....+ .
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS-YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTC-EEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcce-EEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 333222 2444443221 455666665332 122 4445555776666654321 11111 1
Q ss_pred -CcccCeEEEEEcCCCCEEEEEE
Q 002881 227 -GHTHNVSAVCFHPELPIIITGS 248 (871)
Q Consensus 227 -~~~~~v~~i~~~p~~~~l~~~~ 248 (871)
.....+..+...|+|.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1234688899999988776654
No 424
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.45 E-value=0.46 Score=48.93 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=29.5
Q ss_pred eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
..+..+|++++|.+.++.. ..+..|..+|..+...|+++.|.++|.++
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666666666666542 33556666666666666666666666654
No 425
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.41 E-value=0.68 Score=47.61 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=43.0
Q ss_pred eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
..+...|++++|.++.+.. .++..|..+|..+...|+++.|+++|.++-.
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567899999999999763 4577899999999999999999999998743
No 426
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.40 E-value=0.4 Score=45.24 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=40.6
Q ss_pred eeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
.+..+|++++|.+.++.. ++...|..+|..+...|+++.|+++|.++-
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346789999999888653 457799999999999999999999999874
No 427
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.28 E-value=0.71 Score=39.08 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=26.1
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
+...|++++|.++.++. .+...|..+|..+...++++.|+++|.++
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34556666666655542 23455666666666666666666655543
No 428
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.20 E-value=0.63 Score=46.68 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=31.8
Q ss_pred eccCCHHHHHHHHHHc-------CC----hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-------QS----ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-------~~----~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|++++|.+..+.. .+ ...|..+|..+...|+++.|+++|.++-
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777777766532 11 2367788888888888888888887764
No 429
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.14 E-value=0.29 Score=51.96 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=7.6
Q ss_pred HHccCHHHHhhhC
Q 002881 599 VMRGDLERANEIL 611 (871)
Q Consensus 599 ~~~~~~~~a~~~l 611 (871)
...++++.|...+
T Consensus 59 ~~~g~~~~A~~~~ 71 (411)
T 4a1s_A 59 CNAGDCRAGVAFF 71 (411)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCcHHHHHHHH
Confidence 4467777764433
No 430
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.12 E-value=0.69 Score=49.21 Aligned_cols=96 Identities=11% Similarity=-0.082 Sum_probs=64.7
Q ss_pred eccCCHHHHHHHHHHc----------CC---hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcC--CHHHHH
Q 002881 650 IQLGRLEVAQEIATEV----------QS---ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLG--DAEGIS 714 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~----------~~---~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~--~~~~~~ 714 (871)
-..|++++|..++++. ++ -.....||..+..+|+++.|+.+|.++-... -...| .++...
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~-----~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY-----SKHYPVYSLNVAS 383 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHSCSSCHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-----HHHcCCCChHHHH
Confidence 3578899999888652 22 2367889999999999999999999863221 12223 344444
Q ss_pred HHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHH-HHHHhcCCch
Q 002881 715 KLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAA-LMARSYLPSK 766 (871)
Q Consensus 715 ~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~-~la~~~~~~~ 766 (871)
.+.+++ .+|...|++++|+.+|. +|+ -+.+.++|++
T Consensus 384 ~l~nLa----------~~~~~qg~~~eA~~~~~------~Al~i~~~~lG~~H 420 (433)
T 3qww_A 384 MWLKLG----------RLYMGLENKAAGEKALK------KAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHH----------HHHHHTTCHHHHHHHHH------HHHHHHHHHTCTTC
T ss_pred HHHHHH----------HHHHhccCHHHHHHHHH------HHHHHHHHHcCCCC
Confidence 443333 34778899999999987 455 3445677755
No 431
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.09 E-value=0.76 Score=39.31 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=50.2
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
...|++++|.+..+.. .+...|..+|..+...++++.|+.+|.++-... ..+......
T Consensus 20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~--------- 82 (137)
T 3q49_B 20 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFF--------- 82 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHH---------
T ss_pred HHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------chhHHHHHH---------
Confidence 4567777777666542 346788999999999999999999887753221 122222222
Q ss_pred CchHHHHHHHHcCCHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLV 747 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~ 747 (871)
-+.++...|++++|++.|.
T Consensus 83 ----l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 83 ----LGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp ----HHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHhhHHHHHHHHH
Confidence 2344556788888887766
No 432
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.06 E-value=1 Score=39.58 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCh----HHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 655 LEVAQEIATEVQSE----SKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 655 ~~~A~~~~~~~~~~----~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
+++|+++++...++ ..+..+|..+...|+++.|+++|.++-
T Consensus 32 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 32 HEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445554444432 367778888888888888888887653
No 433
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=91.84 E-value=0.36 Score=48.95 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
..|..+|......|+++.|.++|.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45666666666666666666666554
No 434
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.77 E-value=0.54 Score=37.92 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKE 722 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~ 722 (871)
..+|++++|.+..+.. +....|..+|..+...|+++.|+++|.++- .+....++......+......
T Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al------~l~~~~~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 18 LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI------EVAREEGTQKDLSELQDAKLK 89 (100)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhhhcCCchhHHHHHHHHHHH
Confidence 4667777777777643 456789999999999999999999998753 233445665555555555444
No 435
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=91.75 E-value=1.1 Score=37.70 Aligned_cols=82 Identities=11% Similarity=-0.058 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc-----CC---H
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML-----GK---L 739 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----g~---~ 739 (871)
...|..+|..+...|+++.|+++|.++-.. ...+......++.+....|++..|...+... .+ +
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 357899999999999999999999876322 2233444555555555555555555443221 01 2
Q ss_pred HHHHHHHHHCCCchHHHH
Q 002881 740 EDCLQLLVESNRIPEAAL 757 (871)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~ 757 (871)
-....+|...+++++|+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~ 93 (126)
T 3upv_A 76 IRKATAQIAVKEYASALE 93 (126)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHH
Confidence 233345556666666653
No 436
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=91.66 E-value=0.51 Score=45.82 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=36.2
Q ss_pred eccCCHHHHHHHHHHc----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|++++|.++.+.. .++..|..+|..+...|+++.|+++|.++-
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3556666666665432 667899999999999999999999998864
No 437
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=91.66 E-value=0.12 Score=53.85 Aligned_cols=93 Identities=8% Similarity=0.085 Sum_probs=62.1
Q ss_pred HHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchH-HHHHHHHHHHhhhh-----------Ch------------hh---
Q 002881 733 LFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKV-SEIVAIWRKDLQKV-----------NP------------KA--- 785 (871)
Q Consensus 733 ~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~~~~~-~~~~~~~~~~L~~~-----------~~------------~~--- 785 (871)
++..|++++|++++++.+||.+|+.+|...+++.. +.+.+.|-..-... .. +|
T Consensus 153 aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~~~l~~WkE~ 232 (399)
T 2pm7_A 153 NLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVENLDVSQWKFI 232 (399)
T ss_dssp HHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHHBCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhcCChhhHHHH
Confidence 66799999999999999999999999999999877 55554443221110 00 00
Q ss_pred ---hhhcCCCc--cCCCCcccHHHHHHHhHHHhhccCCCCCCccc
Q 002881 786 ---AESLADPE--EYSNLFDDWQVALAVESKAAATRGVHPPAEDY 825 (871)
Q Consensus 786 ---a~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 825 (871)
.=.-++|. +++.|+...++-|+.+|..+.|.--|.-|...
T Consensus 233 La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~ 277 (399)
T 2pm7_A 233 SKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSL 277 (399)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCH
Confidence 01123466 77777778888888877776665444444443
No 438
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.51 E-value=0.89 Score=37.27 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=34.0
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
...|++++|.++.+.. .+...|..+|..+...++++.|.++|.++
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3567777777766542 35678888899888899999998887765
No 439
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.45 E-value=0.61 Score=47.29 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=40.4
Q ss_pred eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
..+..+|++++|.++.+.. ++...|..+|..+...|+++.|+++|.++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456789999999888753 45678999999999999999999999886
No 440
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.44 E-value=0.22 Score=57.15 Aligned_cols=103 Identities=13% Similarity=0.023 Sum_probs=69.6
Q ss_pred eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHH
Q 002881 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGI 713 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~~~~ 713 (871)
..++.+|++++|.+.+++. ++...|..+|..+...|+++.|+++|.++-.. ..+..+|...|+.+.
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 4466889999999888643 56789999999999999999999999987422 133345556666555
Q ss_pred HHHHHHHHHcC-CchH----HHHHHHHcCCHHHHHHHHHHCC
Q 002881 714 SKLASLAKEQG-KNNV----AFLCLFMLGKLEDCLQLLVESN 750 (871)
Q Consensus 714 ~~l~~~~~~~~-~~~~----a~~~~~~~g~~~~a~~l~~~~~ 750 (871)
...-+.+...+ .+.. -+.++...|++++|++.|.+.-
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 43333333322 2222 2345667788888888887654
No 441
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=91.33 E-value=0.12 Score=54.89 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHcCC
Q 002881 670 KWKQLGELAMSTGK 683 (871)
Q Consensus 670 ~w~~la~~al~~~~ 683 (871)
.|..+|..+...|+
T Consensus 168 ~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 168 ALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc
Confidence 45566666666666
No 442
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.31 E-value=0.84 Score=50.98 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=30.5
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
...|++++|.+.+++. ++...|..+|..+...|+++.|+++|.++
T Consensus 34 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 34 LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp HHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3556666666666542 33567777777777777777777777765
No 443
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.30 E-value=0.41 Score=49.78 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=56.5
Q ss_pred eeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHHHH
Q 002881 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGISK 715 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~~~~~~ 715 (871)
+...|++++|.+++++. ++...|..+|..+...|+++.|+++|.++-.. ..+..+|...|+.+....
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 154 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHH
Confidence 34667777777777643 45678888888888888888888888876422 122334445555544433
Q ss_pred HHHHHHHcCCch---------------HHHHHHHHcCCHHHHHHHHHHC
Q 002881 716 LASLAKEQGKNN---------------VAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 716 l~~~~~~~~~~~---------------~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
.-+.+....... ..+.++...|++++|+++|.++
T Consensus 155 ~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333332211110 1134555667777777766543
No 444
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.24 E-value=2 Score=37.19 Aligned_cols=83 Identities=13% Similarity=-0.008 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc-----CC---HH
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML-----GK---LE 740 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----g~---~~ 740 (871)
..|..+|..+...|+++.|+++|.++-. ..-.+......++.+....|++..|..++... .+ +-
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--------LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--------hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4677899999999999999999987531 22334455566666777777777766665432 11 33
Q ss_pred HHHHHHHHCCCchHHHHHH
Q 002881 741 DCLQLLVESNRIPEAALMA 759 (871)
Q Consensus 741 ~a~~l~~~~~~~~~A~~la 759 (871)
....+|...+++++|+...
T Consensus 91 ~lg~~~~~~g~~~~A~~~~ 109 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGF 109 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 4455677778887776443
No 445
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.24 E-value=0.63 Score=41.19 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=54.6
Q ss_pred ccCCHHHHHHHHHH---cCC--------------hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhc--CCHH
Q 002881 651 QLGRLEVAQEIATE---VQS--------------ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSL--GDAE 711 (871)
Q Consensus 651 ~l~~~~~A~~~~~~---~~~--------------~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~--~~~~ 711 (871)
++|++++|.+.+++ +++ ...|..+|..+...|+++.|+.||.++-.+ +-.. -+++
T Consensus 23 ~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l------~n~~~e~~pd 96 (159)
T 2hr2_A 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY------FNRRGELNQD 96 (159)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHHCCTTST
T ss_pred HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------hhccccCCCc
Confidence 56666666666653 111 128999999999999999999999886332 1110 1111
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHH
Q 002881 712 GISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMA 759 (871)
Q Consensus 712 ~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la 759 (871)
..+.+.. + +..-+.++..+|++++|++.|. +|+++.
T Consensus 97 ~~~A~~~-----~-~~~rG~aL~~lgr~eEAl~~y~------kAlel~ 132 (159)
T 2hr2_A 97 EGKLWIS-----A-VYSRALALDGLGRGAEAMPEFK------KVVEMI 132 (159)
T ss_dssp HHHHHHH-----H-HHHHHHHHHHTTCHHHHHHHHH------HHHHHH
T ss_pred hHHHHHH-----H-HHhHHHHHHHCCCHHHHHHHHH------HHHhcC
Confidence 1111100 0 1233456668889999988876 555554
No 446
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.17 E-value=0.47 Score=40.44 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHHHHHcC----C--------chH
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASLAKEQG----K--------NNV 728 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~~~~~~l~~~~~~~~----~--------~~~ 728 (871)
..|++||..+..+|+++.|+++|.++-.. ..+..+|...|+.+......+.+.... . +..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 36899999999999999999999987432 234556777898776555444443221 1 112
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 002881 729 AFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 729 a~~~~~~~g~~~~a~~l~~~ 748 (871)
-+.++...|++++|++.|.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 24456667777777777653
No 447
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.07 E-value=0.64 Score=52.00 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHH
Q 002881 653 GRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASL 719 (871)
Q Consensus 653 ~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~l~~~ 719 (871)
|++++|.+.+++. ++...|..+|..+...|+++.|+++|.++-... .+..+|...|+.+......+.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555432 456789999999999999999999999885432 334456667776665555444
Q ss_pred HHHcCCch-----HHHHHHHHcCCHHHHHHHHHH
Q 002881 720 AKEQGKNN-----VAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 720 ~~~~~~~~-----~a~~~~~~~g~~~~a~~l~~~ 748 (871)
+......+ ..+.++...|++++|++.|.+
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 116 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44433221 234456667777777777665
No 448
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=91.06 E-value=0.75 Score=50.77 Aligned_cols=125 Identities=10% Similarity=-0.002 Sum_probs=78.7
Q ss_pred HHHHhCCChhhhhhcc-----cCcccc-----eeeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHH
Q 002881 624 RFLESRGMIEEAIEVA-----TDPDYR-----FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAE 688 (871)
Q Consensus 624 ~~~~~~~~~~~a~~~~-----~~~~~~-----f~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~ 688 (871)
.+....+..++|.... .+|... -..+...|++++|.+.++.. +.+..|..+|..+...|+++.|+
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 4445566777665442 233311 15567889999999988753 45778999999999999999999
Q ss_pred HHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHHHHHHHHH
Q 002881 689 GCMKQAMDL--------SGLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 689 ~~y~~~~d~--------~~l~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
++|.++-.. ..+..+|...|+.+......+.+...... ...+.++...|++++|++.|.+
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999877422 12334555667766554444443332211 1234455666777777777654
No 449
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=90.97 E-value=0.24 Score=53.95 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=68.0
Q ss_pred HHHHHHHHhCCChhhhhhcc-----cCcccce-----eeeecc---------CCHHHHHHHHHHc-----CChHHHHHHH
Q 002881 620 NSVARFLESRGMIEEAIEVA-----TDPDYRF-----ELAIQL---------GRLEVAQEIATEV-----QSESKWKQLG 675 (871)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~-----~~~~~~f-----~~~l~l---------~~~~~A~~~~~~~-----~~~~~w~~la 675 (871)
..+...+...|.+++|.... .+|+... .++..+ |++++|.+.+++. ++...|..||
T Consensus 141 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 220 (474)
T 4abn_A 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220 (474)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34445555566666665432 2333211 344566 8999999998763 4578999999
Q ss_pred HHHHHc--------CChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHH
Q 002881 676 ELAMST--------GKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCL 733 (871)
Q Consensus 676 ~~al~~--------~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 733 (871)
..+... ++++.|+++|.++-....- ...++.....++.+....|++..|...+
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999 9999999999986543210 1134444555555555555555544443
No 450
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.94 E-value=0.8 Score=38.73 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHH
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAK 721 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~l~~~~~ 721 (871)
...|..+|..+...++++.|+++|.++-... .+..+|...|+.+......+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4578899999999999999999999874332 22234444566555444444433
No 451
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.76 E-value=0.7 Score=41.23 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..|+..|..+...|+++.|+++|.++-
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al 38 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDAL 38 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356667777777777777777776654
No 452
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=90.71 E-value=0.39 Score=52.23 Aligned_cols=48 Identities=13% Similarity=0.010 Sum_probs=39.8
Q ss_pred eeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
.+...|++++|.+.+++. +....|..+|..+...++++.|+++|.++-
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445788999998888753 447789999999999999999999998874
No 453
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=90.59 E-value=0.13 Score=54.34 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHcCC
Q 002881 670 KWKQLGELAMSTGK 683 (871)
Q Consensus 670 ~w~~la~~al~~~~ 683 (871)
.|..+|..+...|+
T Consensus 129 ~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 129 ALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC
Confidence 44455555555555
No 454
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.58 E-value=1.3 Score=37.11 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=50.0
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
...+++++|.+..+.. .+...|..+|..+...++++.|+++|.++-.. ...+.....
T Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~---------- 84 (131)
T 2vyi_A 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--------DPAYSKAYG---------- 84 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHH----------
T ss_pred HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--------CccCHHHHH----------
Confidence 3567777777766542 35678889999999999999999988875322 112222121
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
..+.++...|++++|++.|.+
T Consensus 85 ---~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 85 ---RMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCHHHHHHHHHH
Confidence 223345567777777777653
No 455
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=90.56 E-value=2 Score=40.45 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHH---cCChHHHHHHHHHHHHcC----ChhhHHHHHHHc
Q 002881 653 GRLEVAQEIATE---VQSESKWKQLGELAMSTG----KLEMAEGCMKQA 694 (871)
Q Consensus 653 ~~~~~A~~~~~~---~~~~~~w~~la~~al~~~----~~~~A~~~y~~~ 694 (871)
+++++|.+..++ ..++..+..||..+.. + +++.|.++|.++
T Consensus 32 ~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 444444444432 3445556666666655 4 666666666655
No 456
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.49 E-value=1.4 Score=35.93 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|..+|..+...|+++.|+++|.++-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 31 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAI 31 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4578899999999999999999999864
No 457
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=90.48 E-value=0.86 Score=44.62 Aligned_cols=19 Identities=5% Similarity=-0.326 Sum_probs=11.0
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 002881 730 FLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~ 748 (871)
+.++...|++++|++.|.+
T Consensus 155 a~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHH
Confidence 4455556666666666554
No 458
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=90.47 E-value=1.2 Score=43.75 Aligned_cols=100 Identities=16% Similarity=0.069 Sum_probs=63.1
Q ss_pred eccCCHHHHHHHHHHcC---------ChHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHH
Q 002881 650 IQLGRLEVAQEIATEVQ---------SESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEG 712 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~~---------~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~~~ 712 (871)
...+++++|.+.+++.- ....|..+|..+...|+++.|+++|.++-.. ..+..+|...|+.+.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 35578888888776532 2457999999999999999999999986422 123335555666655
Q ss_pred HHHHHHHHHHcCC-chH----HHHHHHHcCCHHHHHHHHHHC
Q 002881 713 ISKLASLAKEQGK-NNV----AFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 713 ~~~l~~~~~~~~~-~~~----a~~~~~~~g~~~~a~~l~~~~ 749 (871)
....-+.+..... ... -+.++...|++++|++.|.+.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5544444443222 111 234555667777776666543
No 459
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=90.40 E-value=0.54 Score=49.55 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHHHHH-------cCC----hHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------------chhHHHHHhcCC
Q 002881 655 LEVAQEIATE-------VQS----ESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------------SGLLLLYSSLGD 709 (871)
Q Consensus 655 ~~~A~~~~~~-------~~~----~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------------~~l~~l~~~~~~ 709 (871)
+++|.+.++. ... ...|..+|..+...|+++.|+++|.++-.. ..+..+|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 7777666543 222 236888999999999999999988876322 223334555666
Q ss_pred HHHHHHHHHHH----HHcCCc-------hHHHHHHHHcCCHHHHHHHHHH
Q 002881 710 AEGISKLASLA----KEQGKN-------NVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 710 ~~~~~~l~~~~----~~~~~~-------~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
.+......+.+ ...+.. ..-+.++...|++++|++.|.+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 55433332222 222211 1223445566777777766653
No 460
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.39 E-value=1.9 Score=36.74 Aligned_cols=59 Identities=17% Similarity=0.045 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002881 666 QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (871)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 732 (871)
.+...|..+|..+...|+++.|+++|.++-... ..+......++.+....|++..|...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~ 65 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALAD 65 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHH
Confidence 346789999999999999999999998863321 22333344445555555554444443
No 461
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=90.36 E-value=1.3 Score=47.22 Aligned_cols=94 Identities=12% Similarity=0.011 Sum_probs=63.3
Q ss_pred ccCCHHHHHHHHHHc----------CC---hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHh---cCCHHHHH
Q 002881 651 QLGRLEVAQEIATEV----------QS---ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSS---LGDAEGIS 714 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~----------~~---~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~---~~~~~~~~ 714 (871)
..|++++|.+++++. ++ -.....||..+..+|+++.|+.+|.++-. +|.. ...++...
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~------i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME------PYRIFFPGSHPVRGV 372 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HHHHHSCSSCHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH------hHHHHcCCCChHHHH
Confidence 667888888888643 11 24678899999999999999999887632 2221 22334333
Q ss_pred HHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHH-HHHHhcCCch
Q 002881 715 KLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAA-LMARSYLPSK 766 (871)
Q Consensus 715 ~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~-~la~~~~~~~ 766 (871)
.+.+++ .+|...|++++|+.+|. +|+ -+.++++|++
T Consensus 373 ~l~nLa----------~~~~~~g~~~eA~~~~~------~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 373 QVMKVG----------KLQLHQGMFPQAMKNLR------LAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHH----------HHHHHTTCHHHHHHHHH------HHHHHHHHHTCTTS
T ss_pred HHHHHH----------HHHHhcCCHHHHHHHHH------HHHHHHHHhcCCCC
Confidence 333333 34677899999999987 455 4555677754
No 462
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.20 E-value=1.5 Score=36.28 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=33.7
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
...|++++|.++.++. .+...|..+|..+...|+++.|+.+|.++
T Consensus 20 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3566677776666542 34678889999999999999999988775
No 463
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.14 E-value=8.2 Score=38.13 Aligned_cols=218 Identities=14% Similarity=0.043 Sum_probs=109.5
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCceEEEEe
Q 002881 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF 138 (871)
Q Consensus 59 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 138 (871)
.|..++--.. ..+.-. ||.|..|-.+....+..-......|..++..... .++. . ||.|..|-.....++-. .
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-P 97 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-C
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-C
Confidence 4666654333 222235 8999999765422211111122357777766443 3333 4 89999997654312111 1
Q ss_pred ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCeEEEecCCCCeeEEEEeecCCcCEEEEEeCCCeEEEEECCC
Q 002881 139 EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (871)
Q Consensus 139 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~~~~~dg~i~v~d~~~ 218 (871)
..-...|..++... ...+.-+ +|.|..|-....-..-........|..++. ... ..++-. +|.|+.|-...
T Consensus 98 ~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~--G~~--~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 98 AEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVY--TALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp GGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSS--EEEEEE-TTEEEEEECCT
T ss_pred cccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEc--ccC--EEEEEE-CCEEEEecCCC
Confidence 11134677777653 3444445 999999987543221111112234555543 222 233334 79999997654
Q ss_pred CceEEEecCcccCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEecCCccEEEEEEeeCCCeEEEEEcCCeEEEe
Q 002881 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (871)
Q Consensus 219 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~g~~dg~i~i~ 298 (871)
...+..-......|..++..... .++. .||.|..|-......+..-......|..++..... .++. + +|.+..|
T Consensus 169 ~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~w 242 (282)
T 3qhy_B 169 FGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAW 242 (282)
T ss_dssp TSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEE
T ss_pred CCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEe
Confidence 22111111123567777766543 3333 58999999654322111111112345666654332 2333 3 8888777
No 464
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.14 E-value=0.5 Score=38.48 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|..+|..+...++++.|+.+|.++-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 33 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAI 33 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4568889999999999999999998764
No 465
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=90.10 E-value=1.9 Score=44.55 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=64.0
Q ss_pred eeeeeccCCHHHHHHHHHHc-----C--ChHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCH
Q 002881 646 FELAIQLGRLEVAQEIATEV-----Q--SESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDA 710 (871)
Q Consensus 646 f~~~l~l~~~~~A~~~~~~~-----~--~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~ 710 (871)
.......|++++|.++.+.. . ....|..+|..+...|+++.|+++|.++-.. ..+..+|...|+.
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 33445899999999988752 2 4678999999999999999999999886422 1223344555665
Q ss_pred HHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHHHHHHHH
Q 002881 711 EGISKLASLAKEQGKN-----NVAFLCLFMLGKLEDCLQLLV 747 (871)
Q Consensus 711 ~~~~~l~~~~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~ 747 (871)
+.....-+.+...... ...+.++...|++++|++.|.
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5444443333332211 112344555666666666654
No 466
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=90.07 E-value=0.19 Score=51.21 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=29.3
Q ss_pred eeeccCCHHHHHHHHHH-------cCC----hHHHHHHHHHHHHcCC--------------------hhhHHHHHHHc
Q 002881 648 LAIQLGRLEVAQEIATE-------VQS----ESKWKQLGELAMSTGK--------------------LEMAEGCMKQA 694 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~-------~~~----~~~w~~la~~al~~~~--------------------~~~A~~~y~~~ 694 (871)
.+..+|++++|.+.+++ ... ...+..+|..+...|+ ++.|+++|.++
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34556666666665543 222 2267777777777777 77777777654
No 467
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=90.03 E-value=1.1 Score=44.07 Aligned_cols=115 Identities=13% Similarity=0.047 Sum_probs=72.8
Q ss_pred HHHccCHHHHhhhCCCCCcchhHHHHHHHHhCCChhhhhhcccCcccceeeeeccCCHHHHHHHHHHcCC-------hHH
Q 002881 598 LVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQS-------ESK 670 (871)
Q Consensus 598 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~~~~~~~-------~~~ 670 (871)
.+..|.+++|...+..+....-..+..|... -++++.++|++|....+.... ...
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a------------------~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEHLVAWMKA------------------VVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHHHHHHHHH------------------HHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCchHHHHHHH------------------HHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 3447888888888776654332222333322 134688999999998875432 237
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHH-HHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHC
Q 002881 671 WKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAE-GISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 671 w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
+-.||..+...|+++.|+++|.++..-.. ++. .... ....+.++..+|+.++|..+|.+.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~---------~P~~~~da----------~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPA---------GEACARAI----------AWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTT---------TTTTHHHH----------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCC---------CccccHHH----------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999999999998732110 000 0000 112234556788888888887754
No 468
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=89.96 E-value=1.1 Score=46.91 Aligned_cols=104 Identities=10% Similarity=0.034 Sum_probs=64.4
Q ss_pred HHHHHHhCCChhhhhhcc-----cCcccc------eeeeeccCC-HHHHHHHHHHc-----CChHHHHHHHHHHHHcCCh
Q 002881 622 VARFLESRGMIEEAIEVA-----TDPDYR------FELAIQLGR-LEVAQEIATEV-----QSESKWKQLGELAMSTGKL 684 (871)
Q Consensus 622 ~~~~~~~~~~~~~a~~~~-----~~~~~~------f~~~l~l~~-~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~ 684 (871)
....+...|+.++|+... .+|... -.....+|+ +++|++.+++. ++...|..+|......|++
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Confidence 344556677777776543 234332 144556775 88888777643 4566788888888888888
Q ss_pred hhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHH
Q 002881 685 EMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCL 733 (871)
Q Consensus 685 ~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 733 (871)
+.|+.+|.++- ...-.+...+..++.+....|++..|..++
T Consensus 183 ~eAl~~~~kal--------~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 183 SQELEFIADIL--------NQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp TTHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHH--------HhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 88888777752 223344555555666666666666655554
No 469
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=89.82 E-value=2 Score=37.64 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc-----CC---H
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML-----GK---L 739 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----g~---~ 739 (871)
...|..+|..+...|+++.|+++|.++-. ....++..+..++.+....|++..|..++... ++ +
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV--------LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 34678899999999999999999987521 22334444555666666666666655554332 11 2
Q ss_pred HHHHHHHHHCCCchHHHH
Q 002881 740 EDCLQLLVESNRIPEAAL 757 (871)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~ 757 (871)
-....+|...|++++|+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAES 110 (148)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 233445566666666653
No 470
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.79 E-value=2.5 Score=34.74 Aligned_cols=72 Identities=14% Similarity=-0.031 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHH
Q 002881 666 QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQL 745 (871)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l 745 (871)
+++..|..+|..+...|+++.|+++|.++-... ..+..... .-+.++...|++++|++.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~-------------~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWK-------------WLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH-------------HHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHH-------------HHHHHHHHcCCHHHHHHH
Confidence 457789999999999999999999988753221 12222222 223455677888888887
Q ss_pred HHHCCCchHHHHHHHhcCC
Q 002881 746 LVESNRIPEAALMARSYLP 764 (871)
Q Consensus 746 ~~~~~~~~~A~~la~~~~~ 764 (871)
|. +|+.+......
T Consensus 76 ~~------~al~~~~~~~~ 88 (115)
T 2kat_A 76 WE------SGLAAAQSRGD 88 (115)
T ss_dssp HH------HHHHHHHHHTC
T ss_pred HH------HHHHhcccccc
Confidence 65 55555555444
No 471
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=89.62 E-value=2 Score=44.83 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=34.9
Q ss_pred eeccCCHHHHHHHHH-------HcCCh----HHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 649 AIQLGRLEVAQEIAT-------EVQSE----SKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 649 ~l~l~~~~~A~~~~~-------~~~~~----~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
+..+|++++|.+..+ ...++ ..+..||..+...|+++.|+++|.++-.
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456667666666553 33332 3677899999999999999999998744
No 472
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=89.60 E-value=0.61 Score=50.93 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=66.3
Q ss_pred ccCCHHHHHHHHHHc------CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc---------chhHHHHHhcCCHHHHHH
Q 002881 651 QLGRLEVAQEIATEV------QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL---------SGLLLLYSSLGDAEGISK 715 (871)
Q Consensus 651 ~l~~~~~A~~~~~~~------~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~~~~~~~~~ 715 (871)
..++++.|+++.+++ .+...|..|-..+.+.|+++.|.+.|.++... ..++..|...|+.+...+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 556788999988765 35678999999999999999999999876532 345555666777666666
Q ss_pred HHHHHHHcCCc------hHHHHHHHHcCCHHHHHHHHHHC
Q 002881 716 LASLAKEQGKN------NVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 716 l~~~~~~~~~~------~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
+-+.....|-. +.-..++...|++++|.++|.++
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 55554444432 22233445556666666666544
No 473
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.55 E-value=0.49 Score=46.67 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
...|..+|..+...|+++.|+++|.++-.
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34688888888899999999998887643
No 474
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=89.32 E-value=1.8 Score=36.29 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=35.8
Q ss_pred eccCCHHHHHHHHHHc-----CCh---HHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 650 IQLGRLEVAQEIATEV-----QSE---SKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~---~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
+..|++++|.+..+.. +++ ..|-.+|..+...|+++.|+++|.++
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4678888888777643 233 58889999999999999999988875
No 475
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.12 E-value=2.2 Score=36.69 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=27.4
Q ss_pred eeeccCCHHHHHHHHHHc----CC----hHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 648 LAIQLGRLEVAQEIATEV----QS----ESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~----~~----~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.+...|++++|.++.+.. .. ...|..+|..+...++++.|+++|.++
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 345566666666666542 11 345666666666666666666665553
No 476
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=88.89 E-value=0.77 Score=38.20 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=46.6
Q ss_pred cCCHHHHHHHHHHc--------CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 002881 652 LGRLEVAQEIATEV--------QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQ 723 (871)
Q Consensus 652 l~~~~~A~~~~~~~--------~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~ 723 (871)
+|++++|.+..++. .....|..||..+...|+++.|+++|.++-.. ...+......
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~-------- 66 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVF-------- 66 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHH--------
Confidence 45555555555432 12457899999999999999999999875321 1222222222
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHHC
Q 002881 724 GKNNVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 724 ~~~~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
-+.++...|++++|++.|.+.
T Consensus 67 -----l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 67 -----YAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp -----HHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HHHHHHHcCCHHHHHHHHHHH
Confidence 234556778888888877643
No 477
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.84 E-value=3 Score=47.58 Aligned_cols=56 Identities=13% Similarity=-0.048 Sum_probs=45.3
Q ss_pred cCcccceeeeeccCCHHHHHHHHHHcC-------------ChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 640 TDPDYRFELAIQLGRLEVAQEIATEVQ-------------SESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 640 ~~~~~~f~~~l~l~~~~~A~~~~~~~~-------------~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
.+|...|-.++..+++++|.+.+++.- +...|..+|..++..|+++.|+++|.++-
T Consensus 392 ~~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 460 (681)
T 2pzi_A 392 TDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA 460 (681)
T ss_dssp TSTTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 344555666789999999998887542 35689999999999999999999998763
No 478
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=88.72 E-value=1.1 Score=42.15 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=51.2
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHH----------------HHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQ----------------LGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLG 708 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~----------------la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~ 708 (871)
+..|++++|.+..++. +++..|.. +|..+...|+++.|+.+|.++-.. .-.
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 86 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--------APN 86 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCC
Confidence 4678888888877653 22456777 999999999999999999875321 223
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002881 709 DAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 709 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
+.+....++ .++...|++++|++.|.+
T Consensus 87 ~~~~~~~lg-------------~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 87 NVDCLEACA-------------EMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp CHHHHHHHH-------------HHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHH-------------HHHHHcCCHHHHHHHHHH
Confidence 333333333 344556777777776653
No 479
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=88.71 E-value=1.5 Score=45.75 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002881 653 GRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (871)
Q Consensus 653 ~~~~~A~~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (871)
..++++.+.+ ..|..+|..+...++++.|+++|.++-.
T Consensus 214 ~~~~~~~~~a------~~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 214 KDVDKILLIS------EDLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp TCHHHHHHHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4555555544 3578888888888888888888887654
No 480
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.67 E-value=1.8 Score=37.35 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002881 667 SESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (871)
Q Consensus 667 ~~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (871)
....|..+|..+...++++.|+++|.++-..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 57 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL 57 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999987543
No 481
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=88.57 E-value=1.1 Score=44.70 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=32.5
Q ss_pred eccCCHHHHHHHHHHc-------CC----hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-------QS----ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-------~~----~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...+++++|.+..++. .+ ...+..+|..+...|+++.|+++|.++-
T Consensus 126 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556777777766542 11 1257888888889999999999888764
No 482
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.36 E-value=1.8 Score=33.45 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=35.7
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...+++++|.+..++. .++..|..+|..+...++++.|+++|.++-
T Consensus 20 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3566777777766542 457789999999999999999999888763
No 483
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=87.75 E-value=3.5 Score=34.26 Aligned_cols=82 Identities=18% Similarity=0.056 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc-----CC---H
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML-----GK---L 739 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----g~---~ 739 (871)
...|..+|..+...++++.|+++|.++-.. ...+......++.+....|++..|..++... .+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 457889999999999999999999876322 1223333444555555555555554443221 11 2
Q ss_pred HHHHHHHHHCCCchHHHH
Q 002881 740 EDCLQLLVESNRIPEAAL 757 (871)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~ 757 (871)
.....+|...+++++|+.
T Consensus 84 ~~~~~~~~~~~~~~~A~~ 101 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVA 101 (131)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 233345556666666653
No 484
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=87.66 E-value=2 Score=42.87 Aligned_cols=111 Identities=10% Similarity=0.067 Sum_probs=68.4
Q ss_pred eeeeccCCHHHHHHHHHHcCC-----hH-----HHH-HHHHHHHHcCChhhHHHHHHHcCC--------------cchhH
Q 002881 647 ELAIQLGRLEVAQEIATEVQS-----ES-----KWK-QLGELAMSTGKLEMAEGCMKQAMD--------------LSGLL 701 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~~~-----~~-----~w~-~la~~al~~~~~~~A~~~y~~~~d--------------~~~l~ 701 (871)
+.++..+++++|.+++++... +. .|- .+|......++++.|+++|.++-+ +..+.
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 456788999999999976321 11 243 488888889999999999998742 22344
Q ss_pred HHHHhcCCHHHHHHHHHHHH----Hc-CCc-------hHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcC
Q 002881 702 LLYSSLGDAEGISKLASLAK----EQ-GKN-------NVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYL 763 (871)
Q Consensus 702 ~l~~~~~~~~~~~~l~~~~~----~~-~~~-------~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~la~~~~ 763 (871)
.+|...|+.+.....-+.+. .. +.. .--+.++...|++++|++.+. +|+.+++...
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~------~al~~~~~~~ 230 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN------KAIEISCRIN 230 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHcC
Confidence 45666777665444333332 22 111 112344556677777777755 4566665553
No 485
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=87.57 E-value=1.6 Score=40.50 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 670 KWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 670 ~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.|..+|..+...++++.|+++|.++
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~a 64 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEA 64 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555544
No 486
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=87.44 E-value=1.2 Score=46.32 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=30.3
Q ss_pred eeeccCCHHHHHHHHHHc-------CC------hHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002881 648 LAIQLGRLEVAQEIATEV-------QS------ESKWKQLGELAMSTGKLEMAEGCMKQA 694 (871)
Q Consensus 648 ~~l~l~~~~~A~~~~~~~-------~~------~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (871)
.+...|++++|.+.+++. .. ...+..+|..+...|+++.|+++|.++
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345667777776666432 11 124556777788888888888887765
No 487
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.33 E-value=3.9 Score=33.53 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|..+|..+...++++.|+++|.++-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 36 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL 36 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578899999999999999999998763
No 488
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=87.28 E-value=2.3 Score=40.32 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc---------hhHHHHHhcCCHHHHHHHHHHHHHcCCch-----HHHH
Q 002881 666 QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS---------GLLLLYSSLGDAEGISKLASLAKEQGKNN-----VAFL 731 (871)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~---------~l~~l~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~ 731 (871)
.++..|..+|..+...|+++.|+++|.++-+.. .+..+|...|+.+......+.+....... .-+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 346788899999999999999999998764322 12334455666555444444443333211 1233
Q ss_pred HHHHcCCHHHHHHHHH
Q 002881 732 CLFMLGKLEDCLQLLV 747 (871)
Q Consensus 732 ~~~~~g~~~~a~~l~~ 747 (871)
++...|++++|++.|.
T Consensus 85 ~~~~~~~~~~A~~~~~ 100 (228)
T 4i17_A 85 AYRDMKNNQEYIATLT 100 (228)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHH
Confidence 4445555555555443
No 489
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=87.28 E-value=2.2 Score=35.66 Aligned_cols=85 Identities=9% Similarity=0.100 Sum_probs=52.1
Q ss_pred eccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002881 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (871)
Q Consensus 650 l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (871)
...|++++|.+..... .+...|..+|..+...|+++.|..+|.++-.... ....+.. .....
T Consensus 15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~---~~~~~----- 81 (131)
T 1elr_A 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-----ENREDYR---QIAKA----- 81 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HSTTCHH---HHHHH-----
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-----ccchhHH---HHHHH-----
Confidence 3566777777766542 4567889999999999999999998887532211 0011100 00111
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002881 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
....+.++...|++++|++.|.+
T Consensus 82 -~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 82 -YARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccHHHHHHHHHH
Confidence 12234456678888888887763
No 490
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=87.15 E-value=1.9 Score=36.11 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002881 670 KWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (871)
Q Consensus 670 ~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 732 (871)
.|-.+|..++..|+++.|+.+|.++-. ..-.+......++.+....|+...|..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 73 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--------KEPEREEAWRSLGLTQAENEKDGLAIIA 73 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--------HSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467899999999999999999887531 2223344444455555544444444333
No 491
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=87.08 E-value=0.66 Score=46.58 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..|..+|..+...|+++.|+++|.++-
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468899999999999999999998774
No 492
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=86.99 E-value=2.3 Score=44.38 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=55.2
Q ss_pred HHHHHHHhCCC-hhhhhhcc-----cCcccc------eeeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCC
Q 002881 621 SVARFLESRGM-IEEAIEVA-----TDPDYR------FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (871)
Q Consensus 621 ~~~~~~~~~~~-~~~a~~~~-----~~~~~~------f~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~ 683 (871)
.....+...|. +++|+... .+|+.. -.+...+|++++|.+.+++. ++...|..+|......|+
T Consensus 136 ~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 136 FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence 34445556665 66666442 233321 14455677777777777643 446677788887778888
Q ss_pred hhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 002881 684 LEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKE 722 (871)
Q Consensus 684 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~ 722 (871)
++.|+++|.++ +...-.+...+..++.+...
T Consensus 216 ~~eAl~~~~~a--------l~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 216 WDNELQYVDQL--------LKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp CTTHHHHHHHH--------HHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHH
Confidence 88888777664 22233455555555554444
No 493
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=86.95 E-value=1.6 Score=47.20 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=35.8
Q ss_pred eeeeccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
.+....+++++|.++.++. .....|..+|..+...|+++.|+++|.++-
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3445667888888887642 457789999999999999999999999874
No 494
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=86.92 E-value=3.3 Score=36.58 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
..|...|..+...|+++.|+++|.++-
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL 38 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAM 38 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468899999999999999999999874
No 495
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.88 E-value=2.7 Score=40.96 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=67.4
Q ss_pred HHccCHHHHhhhCCC----CCc-c-hhHHHHHHHHhCCChhhhhhcc-------cCcccc-------eeeeeccCCHHHH
Q 002881 599 VMRGDLERANEILPS----IPK-E-HHNSVARFLESRGMIEEAIEVA-------TDPDYR-------FELAIQLGRLEVA 658 (871)
Q Consensus 599 ~~~~~~~~a~~~l~~----i~~-~-~~~~~~~~~~~~~~~~~a~~~~-------~~~~~~-------f~~~l~l~~~~~A 658 (871)
...++++.|...+.. -|. . ....++......|..++|+... .++... -..+..+|++++|
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 93 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHH
Confidence 346666665433221 111 1 2355566677778877776542 222221 1457889999999
Q ss_pred HHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002881 659 QEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (871)
Q Consensus 659 ~~~~~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (871)
.+..+.. .....|..+|..+...|+++.|+++|.++-..
T Consensus 94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 9988753 45679999999999999999999999998755
No 496
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=86.76 E-value=0.69 Score=45.53 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=39.6
Q ss_pred eeeeccCCHHHHHHHHHHc-------------CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002881 647 ELAIQLGRLEVAQEIATEV-------------QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (871)
Q Consensus 647 ~~~l~l~~~~~A~~~~~~~-------------~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (871)
..+..+|++++|.+.+++. .....|..+|..+...|+++.|+++|.++-..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5567788888888877642 11347889999999999999999999886543
No 497
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=86.74 E-value=2.1 Score=43.88 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV 747 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~ 747 (871)
...|..+|..++..|+++.|+++|.++-... ..+...+-.+ +.++..+|++++|++.|.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l-------------g~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRR-------------GEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH-------------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHH-------------HHHHHHCCCHHHHHHHHH
Confidence 3689999999999999999999998863321 1222222222 344556777777777765
Q ss_pred H
Q 002881 748 E 748 (871)
Q Consensus 748 ~ 748 (871)
+
T Consensus 255 ~ 255 (336)
T 1p5q_A 255 K 255 (336)
T ss_dssp H
T ss_pred H
Confidence 3
No 498
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=86.70 E-value=3.7 Score=36.08 Aligned_cols=28 Identities=18% Similarity=0.073 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002881 668 ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (871)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (871)
...|..+|..+...|+++.|.++|.++-
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al 40 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAI 40 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4578999999999999999999999864
No 499
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=86.52 E-value=0.55 Score=50.74 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred CcccceeeeeccCCHHHHH-----HHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----------------
Q 002881 641 DPDYRFELAIQLGRLEVAQ-----EIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS----------------- 698 (871)
Q Consensus 641 ~~~~~f~~~l~l~~~~~A~-----~~~~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~----------------- 698 (871)
.|.......+.++++++|. .+.........|..+|..+...++++.|+.+|.++-.+.
T Consensus 236 p~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~ 315 (457)
T 1kt0_A 236 EPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315 (457)
T ss_dssp CTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred CCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Q ss_pred ------hhHHHHHhcCCHHHHHHHHHHHHHcCC-----chHHHHHHHHcCCHHHHHHHHHHC
Q 002881 699 ------GLLLLYSSLGDAEGISKLASLAKEQGK-----NNVAFLCLFMLGKLEDCLQLLVES 749 (871)
Q Consensus 699 ------~l~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~g~~~~a~~l~~~~ 749 (871)
.+..+|...|+.+......+.+..... +...+.+++.+|++++|++.|.+.
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
No 500
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=86.42 E-value=2 Score=38.19 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002881 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (871)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (871)
..|..+|..++..|+++.|+.+|.++-.. ...+.... ..-+.++..+|++++|++.|.+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~-------------~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR--------EETNEKAL-------------FRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHH-------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------CCcchHHH-------------HHHHHHHHHHhcHHHHHHHHHH
Confidence 58999999999999999999988875322 11222111 2234456678888888887764
Done!