Query 002882
Match_columns 871
No_of_seqs 186 out of 262
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 12:42:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2175 Protein predicted to b 100.0 3.9E-93 8.4E-98 788.3 30.5 442 153-611 5-457 (458)
2 PF04802 SMK-1: Component of I 100.0 4.5E-63 9.8E-68 504.5 17.6 190 167-356 3-193 (193)
3 cd00835 RanBD Ran-binding doma 98.4 1E-06 2.2E-11 84.6 9.7 97 15-111 16-121 (122)
4 PF00638 Ran_BP1: RanBP1 domai 98.1 1.4E-05 3.1E-10 76.3 9.8 98 15-112 15-121 (122)
5 cd00837 EVH1 EVH1 (Enabled, Va 97.5 0.00076 1.6E-08 63.4 10.2 94 14-109 6-102 (104)
6 smart00160 RanBD Ran-binding d 97.5 0.00053 1.2E-08 66.9 9.4 94 15-108 25-128 (130)
7 PF00568 WH1: WH1 domain; Int 97.5 0.00079 1.7E-08 63.8 9.9 94 15-110 14-110 (111)
8 PF10508 Proteasom_PSMB: Prote 96.1 0.71 1.5E-05 54.8 22.0 201 358-592 75-278 (503)
9 KOG2175 Protein predicted to b 95.3 0.11 2.3E-06 60.3 10.7 279 332-633 8-322 (458)
10 KOG2160 Armadillo/beta-catenin 95.0 2.2 4.9E-05 48.3 19.9 193 315-545 88-281 (342)
11 smart00461 WH1 WASP homology r 94.9 0.16 3.4E-06 48.1 9.1 95 12-109 8-104 (106)
12 PF01602 Adaptin_N: Adaptin N 92.9 1.6 3.5E-05 50.8 14.4 231 361-627 115-372 (526)
13 KOG0166 Karyopherin (importin) 91.8 16 0.00035 43.7 20.4 241 309-592 195-436 (514)
14 PF03224 V-ATPase_H_N: V-ATPas 91.3 12 0.00025 41.6 18.0 253 277-564 23-287 (312)
15 PF01602 Adaptin_N: Adaptin N 90.9 12 0.00025 43.8 18.4 225 310-591 116-349 (526)
16 PF10508 Proteasom_PSMB: Prote 90.8 40 0.00087 40.2 22.9 170 350-549 192-369 (503)
17 PF12460 MMS19_C: RNAPII trans 90.7 38 0.00083 39.2 23.2 242 280-556 109-404 (415)
18 cd01207 Ena-Vasp Enabled-VASP- 90.6 2.1 4.6E-05 41.2 9.7 92 16-110 8-106 (111)
19 cd00020 ARM Armadillo/beta-cat 88.8 9.7 0.00021 34.4 12.5 111 309-434 8-118 (120)
20 PTZ00429 beta-adaptin; Provisi 86.1 1.1E+02 0.0023 38.8 25.6 159 346-545 119-284 (746)
21 PF04499 SAPS: SIT4 phosphatas 85.8 87 0.0019 37.4 22.4 282 290-604 3-394 (475)
22 PF14664 RICTOR_N: Rapamycin-i 85.2 11 0.00025 43.2 13.0 145 298-467 47-200 (371)
23 PF06058 DCP1: Dcp1-like decap 83.4 5.1 0.00011 39.1 7.9 90 16-110 28-121 (122)
24 cd01205 WASP WASP-type EVH1 do 81.8 13 0.00028 35.7 9.7 92 15-108 10-102 (105)
25 PF05804 KAP: Kinesin-associat 81.4 1.6E+02 0.0034 37.1 23.6 112 355-467 285-423 (708)
26 COG5240 SEC21 Vesicle coat com 79.5 47 0.001 40.4 15.1 140 278-435 230-403 (898)
27 PF12348 CLASP_N: CLASP N term 78.7 80 0.0017 32.8 15.6 186 318-544 15-204 (228)
28 PLN03200 cellulose synthase-in 73.7 4E+02 0.0087 37.7 27.9 214 358-603 607-841 (2102)
29 KOG2734 Uncharacterized conser 73.5 2E+02 0.0044 34.2 20.4 200 350-572 166-373 (536)
30 cd00020 ARM Armadillo/beta-cat 72.7 15 0.00032 33.2 7.3 74 513-589 3-76 (120)
31 KOG2085 Serine/threonine prote 69.4 28 0.00062 40.5 9.9 232 139-397 146-422 (457)
32 PLN03200 cellulose synthase-in 68.9 5E+02 0.011 36.8 24.8 224 307-571 57-285 (2102)
33 cd01206 Homer Homer type EVH1 68.4 31 0.00068 33.3 8.4 95 15-109 9-105 (111)
34 PF08569 Mo25: Mo25-like; Int 66.2 2.4E+02 0.0053 32.2 16.6 172 350-545 66-282 (335)
35 KOG0166 Karyopherin (importin) 65.2 3.2E+02 0.0069 33.2 20.5 200 353-584 145-344 (514)
36 KOG1248 Uncharacterized conser 64.2 4.6E+02 0.01 34.7 23.7 32 518-549 828-859 (1176)
37 PF11707 Npa1: Ribosome 60S bi 62.2 2.7E+02 0.0059 31.4 16.5 153 298-466 48-214 (330)
38 PF04499 SAPS: SIT4 phosphatas 59.6 33 0.00071 40.9 8.5 275 294-572 49-409 (475)
39 PF13251 DUF4042: Domain of un 56.6 1.6E+02 0.0034 30.9 11.9 159 375-548 1-176 (182)
40 PF11841 DUF3361: Domain of un 55.5 2E+02 0.0043 29.7 12.1 103 351-460 39-153 (160)
41 KOG2073 SAP family cell cycle 50.0 6.9E+02 0.015 32.3 19.2 130 287-436 79-220 (838)
42 KOG1991 Nuclear transport rece 49.9 7.2E+02 0.016 32.5 18.5 61 369-438 471-534 (1010)
43 KOG4224 Armadillo repeat prote 49.6 4E+02 0.0086 31.3 14.3 182 354-570 202-386 (550)
44 cd00256 VATPase_H VATPase_H, r 49.3 5.2E+02 0.011 30.7 26.3 199 324-563 68-280 (429)
45 PF04826 Arm_2: Armadillo-like 48.5 4.1E+02 0.0088 29.2 17.1 70 518-591 135-204 (254)
46 KOG0168 Putative ubiquitin fus 47.9 2E+02 0.0042 36.9 12.4 247 297-570 360-653 (1051)
47 PF12922 Cnd1_N: non-SMC mitot 47.7 52 0.0011 33.5 6.7 64 426-508 100-167 (171)
48 PF12460 MMS19_C: RNAPII trans 47.0 2.8E+02 0.006 32.3 13.3 62 333-399 343-404 (415)
49 PF10257 RAI16-like: Retinoic 46.7 47 0.001 38.0 6.8 91 511-604 3-99 (353)
50 PF02985 HEAT: HEAT repeat; I 46.1 24 0.00053 25.8 3.0 30 361-390 1-30 (31)
51 PF13001 Ecm29: Proteasome sta 45.1 59 0.0013 38.9 7.6 129 296-435 300-442 (501)
52 PF05536 Neurochondrin: Neuroc 44.9 6.6E+02 0.014 30.6 18.1 205 308-549 5-216 (543)
53 KOG1062 Vesicle coat complex A 44.3 8E+02 0.017 31.5 16.7 260 294-606 249-525 (866)
54 PF12755 Vac14_Fab1_bd: Vacuol 42.6 98 0.0021 29.0 7.1 67 361-434 28-94 (97)
55 PF11894 DUF3414: Protein of u 40.6 1.2E+03 0.026 32.5 19.5 54 381-435 585-638 (1691)
56 PF12719 Cnd3: Nuclear condens 39.8 5.6E+02 0.012 28.3 14.1 103 323-439 40-146 (298)
57 cd03568 VHS_STAM VHS domain fa 39.8 2.9E+02 0.0062 27.8 10.4 107 312-435 3-109 (144)
58 PF11707 Npa1: Ribosome 60S bi 39.6 6E+02 0.013 28.7 15.8 170 350-545 47-236 (330)
59 COG5171 YRB1 Ran GTPase-activa 39.1 17 0.00036 37.7 1.6 53 15-67 95-148 (211)
60 PF00790 VHS: VHS domain; Int 38.9 3.9E+02 0.0085 26.3 11.4 109 310-435 6-117 (140)
61 KOG1293 Proteins containing ar 38.3 1.5E+02 0.0032 36.7 9.3 116 487-613 436-553 (678)
62 PF04821 TIMELESS: Timeless pr 38.1 5.8E+02 0.013 28.0 14.6 71 420-507 133-212 (266)
63 smart00638 LPD_N Lipoprotein N 36.2 2.3E+02 0.005 34.1 10.8 75 327-401 440-521 (574)
64 KOG2724 Nuclear pore complex c 35.7 52 0.0011 38.5 4.9 94 15-110 386-485 (487)
65 PF04821 TIMELESS: Timeless pr 34.7 1.9E+02 0.0041 31.8 9.0 87 504-593 96-209 (266)
66 KOG1222 Kinesin associated pro 33.6 9.7E+02 0.021 29.3 18.9 170 299-468 227-438 (791)
67 KOG1061 Vesicle coat complex A 33.1 2.3E+02 0.0049 35.7 9.9 249 362-632 123-423 (734)
68 PF14500 MMS19_N: Dos2-interac 31.2 6.7E+02 0.015 27.6 12.5 164 365-569 4-168 (262)
69 PF08926 DUF1908: Domain of un 30.5 1.2E+02 0.0026 33.7 6.4 50 170-230 192-241 (282)
70 cd03569 VHS_Hrs_Vps27p VHS dom 30.3 5.6E+02 0.012 25.5 11.1 109 310-435 5-113 (142)
71 PF08167 RIX1: rRNA processing 30.1 5.1E+02 0.011 26.3 10.6 124 363-512 28-152 (165)
72 KOG4035 Coeffector of mDia Rho 30.0 7E+02 0.015 29.3 12.4 219 227-465 125-382 (411)
73 smart00185 ARM Armadillo/beta- 29.2 87 0.0019 23.2 3.8 36 510-545 5-40 (41)
74 PF13646 HEAT_2: HEAT repeats; 28.5 2E+02 0.0044 24.8 6.6 56 361-431 32-87 (88)
75 PF11698 V-ATPase_H_C: V-ATPas 28.4 1.9E+02 0.0042 28.4 6.8 59 487-546 57-115 (119)
76 PF15005 IZUMO: Izumo sperm-eg 28.1 1.8E+02 0.0039 30.0 6.8 93 221-318 3-100 (160)
77 KOG2160 Armadillo/beta-catenin 27.7 2.4E+02 0.0053 32.4 8.4 97 286-393 146-244 (342)
78 PF08767 CRM1_C: CRM1 C termin 27.0 8.5E+02 0.018 27.5 12.7 61 322-389 132-194 (319)
79 PF04078 Rcd1: Cell differenti 26.0 3.3E+02 0.0072 30.3 8.8 79 491-570 64-149 (262)
80 PF06334 Orthopox_A47: Orthopo 25.9 46 0.001 34.6 2.2 85 144-228 68-180 (244)
81 cd03561 VHS VHS domain family; 25.7 5.3E+02 0.012 25.1 9.5 88 334-434 21-110 (133)
82 PF03224 V-ATPase_H_N: V-ATPas 25.6 4E+02 0.0086 29.6 9.7 104 487-592 70-180 (312)
83 KOG0864 Ran-binding protein RA 25.1 36 0.00079 36.3 1.4 57 15-71 62-121 (215)
84 PRK09687 putative lyase; Provi 25.0 3E+02 0.0066 30.4 8.5 77 349-435 40-119 (280)
85 KOG2956 CLIP-associating prote 24.8 5.1E+02 0.011 31.2 10.5 87 298-393 310-405 (516)
86 KOG0168 Putative ubiquitin fus 24.7 1.1E+03 0.025 30.5 13.7 74 358-435 209-283 (1051)
87 smart00288 VHS Domain present 24.2 5.2E+02 0.011 25.3 9.2 76 284-360 57-133 (133)
88 PF12333 Ipi1_N: Rix1 complex 24.0 3.4E+02 0.0074 25.5 7.5 40 362-401 13-53 (102)
89 PF12783 Sec7_N: Guanine nucle 23.8 7.2E+02 0.016 24.9 10.4 79 352-435 65-145 (168)
90 COG5111 RPC34 DNA-directed RNA 23.2 34 0.00073 37.1 0.6 52 557-614 183-250 (301)
91 PF14278 TetR_C_8: Transcripti 23.0 2E+02 0.0044 24.0 5.4 67 298-369 6-76 (77)
92 PF05505 Ebola_NP: Ebola nucle 22.7 1E+03 0.023 29.1 12.4 21 699-719 461-481 (717)
93 PF13251 DUF4042: Domain of un 22.6 5.5E+02 0.012 26.9 9.4 78 363-440 43-135 (182)
94 PF06371 Drf_GBD: Diaphanous G 22.3 2.8E+02 0.0061 27.8 7.1 77 491-590 109-185 (187)
95 PF00514 Arm: Armadillo/beta-c 22.3 1.8E+02 0.0039 22.2 4.5 36 510-545 5-40 (41)
96 KOG3671 Actin regulatory prote 22.3 73 0.0016 38.0 3.1 90 16-107 44-135 (569)
97 COG3479 Phenolic acid decarbox 22.2 46 0.001 33.3 1.3 20 79-99 66-85 (175)
98 PF00790 VHS: VHS domain; Int 21.6 6.2E+02 0.013 24.9 9.1 76 284-360 62-140 (140)
99 PF01347 Vitellogenin_N: Lipop 21.6 2E+02 0.0042 34.9 6.8 75 327-401 484-565 (618)
100 PF10363 DUF2435: Protein of u 21.2 5.1E+02 0.011 24.1 7.9 76 308-395 3-78 (92)
101 PF05804 KAP: Kinesin-associat 21.1 3.3E+02 0.0072 34.3 8.6 75 510-591 324-398 (708)
102 KOG3036 Protein involved in ce 20.3 2.4E+02 0.0052 31.4 6.3 69 500-569 104-177 (293)
103 cd03572 ENTH_epsin_related ENT 20.3 1.6E+02 0.0034 29.0 4.6 52 517-571 38-89 (122)
No 1
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-93 Score=788.30 Aligned_cols=442 Identities=44% Similarity=0.739 Sum_probs=419.8
Q ss_pred ChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCC
Q 002882 153 GIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP 232 (871)
Q Consensus 153 s~~~r~rla~~Il~~~~YI~kLl~LF~~cEdle~~~~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VvG~LEYDPe~p 232 (871)
++..|+.++.+| ++++||++|+++|+.|||++++++||++|+|+|+|+++|...|+|.|++|++||+|+|||||||++|
T Consensus 5 ~~~~r~~~~~~i-e~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~ 83 (458)
T KOG2175|consen 5 TDQRREKLVLAL-ENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP 83 (458)
T ss_pred cHHHHHHHHHHH-hcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence 345566666544 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhcc--cccchhhHHhHHHHHHHhHHHHHHHhhCCHHHH
Q 002882 233 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI 310 (871)
Q Consensus 233 ~~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLp--R~LDD~t~s~LnSlI~fNq~eIV~~Lq~d~~FL 310 (871)
++++||+||...++|||||||.||.++.|||||||+||||||||| +++||++++++||+||||+++||++||+|..|+
T Consensus 84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l 163 (458)
T KOG2175|consen 84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL 163 (458)
T ss_pred ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence 988899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002882 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (871)
Q Consensus 311 ~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~ 390 (871)
.+||+++++++++.++|++++.|+||||.++|+||++.|.+||++|++.|||+++++++.++|.++|.++|||+..++++
T Consensus 164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~ 243 (458)
T KOG2175|consen 164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM 243 (458)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCc-----chHHHHHHHHhccCChhH--HHHHHHHHHHhcCCCCCCch--hhhHHHHHHHHhhHHHHH
Q 002882 391 DPNLLRSYVVRQEGI-----PLLGLLVKGMITDFGEDM--HCQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI 461 (871)
Q Consensus 391 dP~lvR~~i~~qe~~-----~Ll~~Li~~ll~d~d~gl--k~Ql~eaLk~LLDp~~m~~~--e~d~fL~~FY~~~~~~L~ 461 (871)
+|+|+|++.+.++.. .++++++++|+++.++.+ .+|++.++++||||++|.++ ++.+|+++||++|++.+.
T Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~ 323 (458)
T KOG2175|consen 244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS 323 (458)
T ss_pred CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence 999999999987654 489999999999888755 59999999999999999885 899999999999999998
Q ss_pred HHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHH
Q 002882 462 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV 541 (871)
Q Consensus 462 ~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~ 541 (871)
+|....... .++++.+..+++++|||+.||+|+||+|++++++++||+.|+++++++|+++|+||.
T Consensus 324 ~p~~~~~~s--------------~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~ 389 (458)
T KOG2175|consen 324 APLVGNTSS--------------NQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL 389 (458)
T ss_pred Ccchhhccc--------------ccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence 888654211 146788899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHHhHhhcc
Q 002882 542 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV 611 (871)
Q Consensus 542 R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~eNik~Li~hlve~y~~~l~ 611 (871)
|.++.++|++|+||++++ |+|+++.|.+||.||||+|||+|+||||||.||+|+|++|+|++||+.+.
T Consensus 390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~ 457 (458)
T KOG2175|consen 390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA 457 (458)
T ss_pred hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence 999999999999999999 99999999999999999999999999999999999999999999998865
No 2
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=100.00 E-value=4.5e-63 Score=504.48 Aligned_cols=190 Identities=53% Similarity=0.956 Sum_probs=186.7
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCCCCCc-cchhHhhhhcC
Q 002882 167 DQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHV-QHHRNFLKEHV 245 (871)
Q Consensus 167 ~~~YI~kLl~LF~~cEdle~~~~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VvG~LEYDPe~p~~-~~HR~fL~~~a 245 (871)
+++||+||+++|++||+++++++||+||+|||+||+||+++|+|+|++|++||+|||||||||++|++ ++||+||++++
T Consensus 3 ~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~ln~~~i~e~llsde~i~~vvG~LEYDp~~~~~ka~hR~fL~~~~ 82 (193)
T PF04802_consen 3 NENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLILLNDPEIFEILLSDENIMDVVGILEYDPEFPQPKANHREFLKEKA 82 (193)
T ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCchHHHHHhchHHHHHHhhhhccCCcccccccchHHHHHhCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999976 59999999999
Q ss_pred CceeeeecCChHHHHHHHhhheeeeeeehhcccccchhhHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHH
Q 002882 246 VFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE 325 (871)
Q Consensus 246 ~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLpR~LDD~t~s~LnSlI~fNq~eIV~~Lq~d~~FL~eLF~~l~~~~~~~e 325 (871)
+|||||||+|+++++|||||||+||||||||||+|||+++++|||+|||||++||++||+|++||++||+++++++++.+
T Consensus 83 ~FkeVIpi~~~~l~~kIhqtyRlqYLkDvvL~r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~ 162 (193)
T PF04802_consen 83 KFKEVIPIPDPELLSKIHQTYRLQYLKDVVLPRFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDE 162 (193)
T ss_pred CCceeeecCCHHHHHHHHHHHhHHHHHHHHcccccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccChHhHHHHHHHH
Q 002882 326 SKKNLVHFLHEFCGLSKSLQMVQQLRLFRDL 356 (871)
Q Consensus 326 ~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~L 356 (871)
+|+++++||||||++||+||+++|.+||++|
T Consensus 163 ~r~d~v~fL~e~c~~ak~lq~~~r~~f~~~L 193 (193)
T PF04802_consen 163 RRRDGVKFLHEFCSLAKNLQPQSRSEFFKTL 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHhcC
Confidence 9999999999999999999999999999975
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=98.44 E-value=1e-06 Score=84.62 Aligned_cols=97 Identities=19% Similarity=0.396 Sum_probs=83.2
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEecCCCc-----
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDPEY----- 86 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~~~----- 86 (871)
.|.|||.+.+ .+.|.++|+|.+.+-.........|++|.+.....+|.+.|.++-.|++++ +.-++|.-.+.
T Consensus 16 ~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~~~~ 95 (122)
T cd00835 16 VRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSDDEP 95 (122)
T ss_pred EEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCCCCC
Confidence 5899999965 378999999999987665567899999999888899999999999999999 89999973221
Q ss_pred -cccccccccCccchhHHHHHHHHHh
Q 002882 87 -STELALSFQEPTGCSYIWDNICNVQ 111 (871)
Q Consensus 87 -g~DlALSFQe~~GC~~IW~~I~~VQ 111 (871)
-.-+++.|..++.|+.+++.|..+|
T Consensus 96 ~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 96 KPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 1248999999999999999998887
No 4
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=98.12 E-value=1.4e-05 Score=76.27 Aligned_cols=98 Identities=17% Similarity=0.385 Sum_probs=76.8
Q ss_pred CeeEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEec-----CCC-
Q 002882 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPE- 85 (871)
Q Consensus 15 rRVKVY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt-----e~~- 85 (871)
.|+|+|.+. ++..|.++|+|.+.+-.........|++|.+.....+|.+.|.++-.|+..+ +.-++|+ |.+
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 94 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKSLVWTAIDYADEEG 94 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTTEEEEEEEECTTSSS
T ss_pred EEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCcEEEEEeccccCCCC
Confidence 589999995 3589999999999987765557789999999988889999999999887766 4578993 221
Q ss_pred ccccccccccCccchhHHHHHHHHHhh
Q 002882 86 YSTELALSFQEPTGCSYIWDNICNVQR 112 (871)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~I~~VQ~ 112 (871)
.-.-+++.|..++=+.++...|.+.|.
T Consensus 95 ~~~~~~irf~~~e~a~~f~~~i~e~~~ 121 (122)
T PF00638_consen 95 KPETYLIRFKSAEDADEFKKKIEEAKE 121 (122)
T ss_dssp EEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhc
Confidence 124689999999999999999988875
No 5
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.50 E-value=0.00076 Score=63.38 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=80.2
Q ss_pred CCeeEEEEeCC-CCCceec--cceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccc
Q 002882 14 MQRVKVYRLND-DGKWDDQ--GTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTEL 90 (871)
Q Consensus 14 ~rRVKVY~L~~-~~~W~D~--GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~Dl 90 (871)
.-||.||.-++ .+.|.-. |+|-+...........+|.+++..++..+++..|.++-.|.+...+..+|.+.+ .=+
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~--~~~ 83 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDN--CVY 83 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCC--cEE
Confidence 35899999965 4899999 888888765444556889999999999999999999999999999999999986 458
Q ss_pred cccccCccchhHHHHHHHH
Q 002882 91 ALSFQEPTGCSYIWDNICN 109 (871)
Q Consensus 91 ALSFQe~~GC~~IW~~I~~ 109 (871)
+|+|++.+.+....+.+++
T Consensus 84 GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 84 GLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred EEeeCCHHHHHHHHHHHHh
Confidence 9999999999988777654
No 6
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=97.49 E-value=0.00053 Score=66.94 Aligned_cols=94 Identities=13% Similarity=0.285 Sum_probs=74.1
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCC-cceeEEEEecCCCcceeEeecCCCCccccccC--eEEEecCCCc----
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERS-EELCLFVIDEEDNETILLHRISPDDIYRKQED--TIISWRDPEY---- 86 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqe--TLIvWte~~~---- 86 (871)
.|.|+|.+.+ .+.|.++|+|.+.+-..... ....|++|.+.....+|.+.|.++-.|+.... .-.+|+-.+.
T Consensus 25 ~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~ 104 (130)
T smart00160 25 ARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDI 104 (130)
T ss_pred EEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCC
Confidence 5999999964 57899999999887654433 56899999998888999999999999987654 4667853221
Q ss_pred --cccccccccCccchhHHHHHHH
Q 002882 87 --STELALSFQEPTGCSYIWDNIC 108 (871)
Q Consensus 87 --g~DlALSFQe~~GC~~IW~~I~ 108 (871)
-.-+++-|-.++.+..+++.|.
T Consensus 105 ~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 105 PKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred CceEEEEEEeCCHHHHHHHHHHHH
Confidence 1348999999999998887764
No 7
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=97.46 E-value=0.00079 Score=63.84 Aligned_cols=94 Identities=16% Similarity=0.333 Sum_probs=79.6
Q ss_pred CeeEEEEeC--CCCCcee-ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccc
Q 002882 15 QRVKVYRLN--DDGKWDD-QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELA 91 (871)
Q Consensus 15 rRVKVY~L~--~~~~W~D-~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlA 91 (871)
-+|.||..+ .++.|.- .|+|-++...........|.+.+-.++..+++..|.++-.|+++..+..+|.+.+ .-++
T Consensus 14 ~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~~--~~~G 91 (111)
T PF00568_consen 14 AVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDDD--CVYG 91 (111)
T ss_dssp EEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEETT--CEEE
T ss_pred EEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeCC--eEEE
Confidence 588999993 3445999 9999998776544466788888888999999999999999999999999999986 4899
Q ss_pred ccccCccchhHHHHHHHHH
Q 002882 92 LSFQEPTGCSYIWDNICNV 110 (871)
Q Consensus 92 LSFQe~~GC~~IW~~I~~V 110 (871)
|+|++.+-+....+.|++.
T Consensus 92 LnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 92 LNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp EEESSHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHhcc
Confidence 9999999999998888764
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.06 E-value=0.71 Score=54.76 Aligned_cols=201 Identities=11% Similarity=0.144 Sum_probs=142.8
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 002882 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (871)
Q Consensus 358 ~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 437 (871)
..++.+++..+|.|+++.+|..++-.|..++.+....+.- +. +..++..++..+ .+.|.++......+|+.|...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-~~---~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-LV---DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-hc---CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCC
Confidence 4566788999999999999999998888888887664332 21 344665666554 778999999999999999754
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhh
Q 002882 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (871)
Q Consensus 438 ~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n 517 (871)
.. -++..|+.....-+..++..+ ++.+-..++|+++-...+++... .++...+
T Consensus 150 ~~--------~~~~l~~~~~~~~L~~l~~~~------------------~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sg 202 (503)
T PF10508_consen 150 PE--------GLEQLFDSNLLSKLKSLMSQS------------------SDIVRCRVYELLVEIASHSPEAA-EAVVNSG 202 (503)
T ss_pred ch--------hHHHHhCcchHHHHHHHHhcc------------------CHHHHHHHHHHHHHHHhcCHHHH-HHHHhcc
Confidence 31 233333333222222222210 12233467788888776666554 5677788
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHh--CC-CCcchHHHHHHHHHHHHh
Q 002882 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN--GN-RYNLLNSAVLELFEYIRK 592 (871)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~n--g~-R~NLLnSA~LELfe~Ir~ 592 (871)
++.+++..+...+-.+++.|+-.+..+...+.. ..||.+.++|.-+.+.+... .+ -..++=...+.||..+-.
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 999999999999999999999999998874433 79999999999999988643 23 355676777889988876
No 9
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=95.26 E-value=0.11 Score=60.32 Aligned_cols=279 Identities=15% Similarity=0.145 Sum_probs=160.2
Q ss_pred HHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHh-------cC-
Q 002882 332 HFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVR-------QE- 403 (871)
Q Consensus 332 ~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~-------qe- 403 (871)
.+.++-|.+.+..+.+.=.++|....+....+-+..+.+.-..-++....+||.++++ |+..++-.-.. +.
T Consensus 8 ~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~-d~~im~v~g~lEydp~~~~~k 86 (458)
T KOG2175|consen 8 RREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFD-DECIMDVIGCLEYDPAVPQSK 86 (458)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhc-cccccccccccccCccCCChh
Confidence 3444455555555555555566655554444444444333333344555666666666 55544422110 10
Q ss_pred -CcchH--HHHHHHHhccCChhHHHHHHHHHHHhc--CC---C--CCCch-----------hhhHHHHHHHHhh--HHHH
Q 002882 404 -GIPLL--GLLVKGMITDFGEDMHCQFLEILRSLL--DS---Y--TLSGA-----------QRDTIIEIFYEKH--LGQL 460 (871)
Q Consensus 404 -~~~Ll--~~Li~~ll~d~d~glk~Ql~eaLk~LL--Dp---~--~m~~~-----------e~d~fL~~FY~~~--~~~L 460 (871)
-...+ ....+..+...++++..++-++.|+.. |. + ....+ .+..+++++++.. +..|
T Consensus 87 ~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l~eL 166 (458)
T KOG2175|consen 87 KHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFLIEL 166 (458)
T ss_pred hhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHHHHH
Confidence 01122 224555666789999999998777643 42 1 11111 3456777777664 3444
Q ss_pred HHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhH---HHHHHH-hhhccchhhHHH
Q 002882 461 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNV---VDKVLL-LTRRREKYLVVA 536 (871)
Q Consensus 461 ~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nl---l~rVl~-Ll~~~~K~L~La 536 (871)
|+-+... . ...++-..+.|+|+..|.+.+.|.+..+..+...-+ +-.++. .++..++-++.+
T Consensus 167 f~~l~~~----~----------t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~ 232 (458)
T KOG2175|consen 167 FARLRSE----S----------TDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSA 232 (458)
T ss_pred HHHhcCC----c----------hHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHH
Confidence 4433221 0 012455678999999999999999988765332222 333332 245558888999
Q ss_pred HHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChHHHHHHHHHHhHhhcccccch
Q 002882 537 AVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYL 616 (871)
Q Consensus 537 AlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~eNik~Li~hlve~y~~~l~~i~yv 616 (871)
|.+.+.+++-.+=- ..|-.+...-+.|- .+..--|+++|+.++.||+-+.+..+.+..+.--.+.+.+....
T Consensus 233 ~~di~~~~ve~~~~-~i~~~~~~~~~~~~-----~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~-- 304 (458)
T KOG2175|consen 233 ATDILARLVEMSPS-MIRSFTLGEALDPD-----DEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLA-- 304 (458)
T ss_pred HHHHHHHHHhcCHH-HHHHHHHHhhcCch-----hhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCcc--
Confidence 99988888855322 22222222222221 23345689999999999999998888888888888888887765
Q ss_pred hhHHHHHH-HHhhhcccC
Q 002882 617 ASLHSFKV-KYEQCLESS 633 (871)
Q Consensus 617 ~tf~~L~~-ryeq~~e~~ 633 (871)
.++-++.. =|..|.+..
T Consensus 305 ~~~se~l~~~~~~c~~~~ 322 (458)
T KOG2175|consen 305 SEKSEFLNFFYKHCMHSL 322 (458)
T ss_pred chhHHHhhhhhccccccC
Confidence 33333332 344455443
No 10
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=2.2 Score=48.27 Aligned_cols=193 Identities=18% Similarity=0.120 Sum_probs=128.1
Q ss_pred HHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH
Q 002882 315 ARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL 394 (871)
Q Consensus 315 ~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~l 394 (871)
..+.++..+.++|.++..=|.++|.=-. --.+|++.|.+..+--.+.+.+..+|-.|+.+|.+++..+|-.
T Consensus 88 ~~~~~~s~~le~ke~ald~Le~lve~iD---------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~ 158 (342)
T KOG2160|consen 88 VILNSSSVDLEDKEDALDNLEELVEDID---------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS 158 (342)
T ss_pred hccCcccCCHHHHHHHHHHHHHHHHhhh---------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 3455667777888877777777665322 2346788776666555999999999999999999999999985
Q ss_pred HHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccc
Q 002882 395 LRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIA 474 (871)
Q Consensus 395 vR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~ 474 (871)
-- .+++.. .+..|+..+-.+.+.+.++++.-|+-.|+=.... ..-.||=-+....|...+-..
T Consensus 159 Qe-~v~E~~---~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~------g~~~fl~~~G~~~L~~vl~~~------- 221 (342)
T KOG2160|consen 159 QE-QVIELG---ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKP------GQDEFLKLNGYQVLRDVLQSN------- 221 (342)
T ss_pred HH-HHHHcc---cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcH------HHHHHHhcCCHHHHHHHHHcC-------
Confidence 43 344422 6677788888888899999999999999844321 112223334455555555331
Q ss_pred cccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHH-hhhccchhhHHHHHHHHHHHh
Q 002882 475 QSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL-LTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 475 ~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~-Ll~~~~K~L~LaAlRF~R~iI 545 (871)
.+...+....+.|++..++.|.+.-. +++.-...+++. +..+-+-...-+|++..=+.+
T Consensus 222 ----------~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 222 ----------NTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred ----------CcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 12334556778899999999987644 554445555543 445555566666666655544
No 11
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=94.94 E-value=0.16 Score=48.09 Aligned_cols=95 Identities=14% Similarity=0.255 Sum_probs=74.4
Q ss_pred CCCCeeEEEEeCCCCCceeccce-EEEEEEeCCCcceeEEEEecCCC-cceeEeecCCCCccccccCeEEEecCCCcccc
Q 002882 12 NPMQRVKVYRLNDDGKWDDQGTG-HVTVDSMERSEELCLFVIDEEDN-ETILLHRISPDDIYRKQEDTIISWRDPEYSTE 89 (871)
Q Consensus 12 ~~~rRVKVY~L~~~~~W~D~GTG-~~s~~~~e~~~~~~L~V~sE~d~-~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~D 89 (871)
.++--|-+|.-.. +.|.-.|+| -+............+-|.+...+ ..+++..|.++-.|.+.-.+.-+|.+.+ .=
T Consensus 8 ~~~avV~~y~~~~-~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~~vv~e~ely~~~~y~~~~~~Fh~f~~~~--~~ 84 (106)
T smart00461 8 LARAVVQLYDADT-KKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQDKVIWNQELYKNFKYNQATPTFHQWADDK--CV 84 (106)
T ss_pred EEEEEEEEEeCCC-CCeEECCCCCEEEEEEEecCCeEEEEEEEecCCCeEEEEEeccCCCEEeecCCceEEEEeCC--eE
Confidence 3445678888764 469999999 55555433344566777777666 7889999999999999999999999854 56
Q ss_pred ccccccCccchhHHHHHHHH
Q 002882 90 LALSFQEPTGCSYIWDNICN 109 (871)
Q Consensus 90 lALSFQe~~GC~~IW~~I~~ 109 (871)
..|+|++.+.+....+.+++
T Consensus 85 ~GLnF~se~EA~~F~~~v~~ 104 (106)
T smart00461 85 YGLNFASEEEAKKFRKKVLK 104 (106)
T ss_pred EEeecCCHHHHHHHHHHHHh
Confidence 99999999999988877764
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.93 E-value=1.6 Score=50.83 Aligned_cols=231 Identities=13% Similarity=0.158 Sum_probs=131.3
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh-cCCCC
Q 002882 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL-LDSYT 439 (871)
Q Consensus 361 Ll~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L-LDp~~ 439 (871)
+++.+...|.++++.||..|+--+..+...+|+.++.. ++..|.+ ++.|.++|+.....-++..+ -.+..
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--------~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--------LIPKLKQ-LLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--------HHHHHHH-HTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--------HHHHHhh-hccCCcchhHHHHHHHHHHHccCcch
Confidence 46778888999999999999999999999999987652 3444444 45899999988888888777 21111
Q ss_pred CCchhhhHHHHHHHHhh-------HHHHHHHHHhcCCCcccccccCCCCcccCCc---HHHHHH------------HHHH
Q 002882 440 LSGAQRDTIIEIFYEKH-------LGQLIDVITASCPQEGIAQSASSGGRVESTK---PEILSN------------ICEL 497 (871)
Q Consensus 440 m~~~e~d~fL~~FY~~~-------~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~---~~ll~~------------l~EL 497 (871)
. . .++..+|... .+|+...++..... .. ...... ..++.. +.|.
T Consensus 186 ~----~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~-~~--------~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 186 Y----K-SLIPKLIRILCQLLSDPDPWLQIKILRLLRR-YA--------PMEPEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp H----T-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTT-ST--------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h----h-hhHHHHHHHhhhcccccchHHHHHHHHHHHh-cc--------cCChhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 0 0 3455555442 23332222221000 00 000001 112222 2222
Q ss_pred HHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCc
Q 002882 498 LCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYN 577 (871)
Q Consensus 498 L~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~N 577 (871)
...+..-.+. .-+...++..+.+++.+++.-++..|++.+..++... . ..++.+-+..|.-..+.+.
T Consensus 252 ~~~i~~l~~~----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-----~----~~v~~~~~~~~~l~~~~d~ 318 (526)
T PF01602_consen 252 IRLIIKLSPS----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-----P----PAVFNQSLILFFLLYDDDP 318 (526)
T ss_dssp HHHHHHHSSS----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-----H----HHHGTHHHHHHHHHCSSSH
T ss_pred HHHHHHhhcc----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-----c----hhhhhhhhhhheecCCCCh
Confidence 2222211111 1144556677778888888888889999888887664 1 2222343444443345556
Q ss_pred chHHHHHHHHHHHH-hhChHHHHHHHHHHhHhh---cccccchhhHHHHHHHHh
Q 002882 578 LLNSAVLELFEYIR-KENLKSLVKYIVDSFWNQ---LVNFEYLASLHSFKVKYE 627 (871)
Q Consensus 578 LLnSA~LELfe~Ir-~eNik~Li~hlve~y~~~---l~~i~yv~tf~~L~~rye 627 (871)
-+-...|+++-.+- .+|++.++..|.+--.+. =-....+.+...+..+|.
T Consensus 319 ~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 319 SIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 67777777766664 579999998888544221 112244556666666664
No 13
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.79 E-value=16 Score=43.74 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=143.9
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChH-hHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV-QQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~-~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
-|..|...+..+.. ..-.|.+.--|..+|.-. +=+|+ .. -..+|++|...+.+.|..+...|+=.|.++
T Consensus 195 ~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk-~P~P~~~~--------v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGK-NPSPPFDV--------VAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred chHHHHHHhccccc-hHHHHHHHHHHHHHHcCC-CCCCcHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445555543332 234555555555555532 21121 11 135789999999999999998888889999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002882 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (871)
Q Consensus 388 ie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 467 (871)
.++.+..++-.+ .-. ..-.|+++|-.... +.+ .-|||++--- ..+. |..-+.--+..+-.-+.+|+..
T Consensus 265 sdg~ne~iq~vi-~~g---vv~~LV~lL~~~~~---~v~-~PaLRaiGNI--vtG~--d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 265 TDGSNEKIQMVI-DAG---VVPRLVDLLGHSSP---KVV-TPALRAIGNI--VTGS--DEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred hcCChHHHHHHH-Hcc---chHHHHHHHcCCCc---ccc-cHHHhhccce--eecc--HHHHHHHHhcChHHHHHHHhcc
Confidence 999998776433 211 22344554433221 111 3455655221 1111 1111111111111122333332
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002882 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (871)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 547 (871)
.+.+. +-.-.|=.++-.+. +.-.-...|+.-+++..++.+|...+.-++--|.--+.++..-
T Consensus 333 s~~~~-----------------ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 333 SPKES-----------------IKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred Ccchh-----------------HHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 12111 11112334444444 3333345688889999999999999988999999999999888
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002882 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (871)
Q Consensus 548 ~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~ 592 (871)
.+.--.+||++.++++|+.++|...-. =+=++||+=++.|.+
T Consensus 395 g~~~qi~yLv~~giI~plcdlL~~~D~---~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 395 GTPEQIKYLVEQGIIKPLCDLLTCPDV---KIILVALDGLENILK 436 (514)
T ss_pred CCHHHHHHHHHcCCchhhhhcccCCCh---HHHHHHHHHHHHHHH
Confidence 889999999999999999999943322 237899999999976
No 14
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.35 E-value=12 Score=41.62 Aligned_cols=253 Identities=17% Similarity=0.294 Sum_probs=124.8
Q ss_pred ccccchhhHHhHHHHHHHhHHHHHHHhhCCHH----HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHH
Q 002882 277 ARVLDEATVANLNSIIHGNNAYVVSLLKDDST----FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRL 352 (871)
Q Consensus 277 pR~LDD~t~s~LnSlI~fNq~eIV~~Lq~d~~----FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~l 352 (871)
++.+++..++.+..+=-.....=.+.+..+.. .+-.|+... +...+-.+-++.++-+++.-.. .+..+
T Consensus 23 a~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~-----~~~~~ 94 (312)
T PF03224_consen 23 AGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDP-----SRVEL 94 (312)
T ss_dssp TTSS-HHHHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-SS-----SSHHH
T ss_pred hCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCH-----HHHHH
Confidence 46677777777666544433332234444331 222344444 2344556666667777666543 45556
Q ss_pred HHHHHhcC---cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHH
Q 002882 353 FRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLE 429 (871)
Q Consensus 353 f~~Lv~~G---Ll~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~e 429 (871)
|..+.... .+..+-..+.++|..+...+.=+|..++.+.+..-.... .+.=..+++.|.. .+...+.+++.-...
T Consensus 95 ~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~-~l~~~~~~~~~~av~ 172 (312)
T PF03224_consen 95 FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSS-QLSSSDSELQYIAVQ 172 (312)
T ss_dssp HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH--TT-HHHH---HHHHH
T ss_pred HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHH-hhcCCCcchHHHHHH
Confidence 66665422 444444488889999999999999999999887544311 0000234555554 223344555555556
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccch
Q 002882 430 ILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR 508 (871)
Q Consensus 430 aLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr 508 (871)
+|..||-.+ .|=..|.+ +.+..|+.-|... .. . .+....++..++ +||+-.=+|-
T Consensus 173 ~L~~LL~~~--------~~R~~f~~~~~v~~l~~iL~~~-~~-----~------~~~~~~Ql~Y~~----ll~lWlLSF~ 228 (312)
T PF03224_consen 173 CLQNLLRSK--------EYRQVFWKSNGVSPLFDILRKQ-AT-----N------SNSSGIQLQYQA----LLCLWLLSFE 228 (312)
T ss_dssp HHHHHHTSH--------HHHHHHHTHHHHHHHHHHHH---------------------HHHHHHHH----HHHHHHHTTS
T ss_pred HHHHHhCcc--------hhHHHHHhcCcHHHHHHHHHhh-cc-----c------CCCCchhHHHHH----HHHHHHHhcC
Confidence 777776332 23334443 4455555533210 00 0 012234444332 3333333332
Q ss_pred --hhhHHhhhhHHHHHHHhhh--ccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHH
Q 002882 509 --IKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 564 (871)
Q Consensus 509 --iK~~il~~nll~rVl~Ll~--~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~P 564 (871)
+-..+..++++..++.+++ .|+|..|+ |+-.+|+|+....+.+..-|+.++++.-
T Consensus 229 ~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv-~la~l~Nl~~~~~~~~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 229 PEIAEELNKKYLIPLLADILKDSIKEKVVRV-SLAILRNLLSKAPKSNIELMVLCGLLKT 287 (312)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH--SHHHHHH-HHHHHHHTTSSSSTTHHHHHHHH-HHHH
T ss_pred HHHHHHHhccchHHHHHHHHHhcccchHHHH-HHHHHHHHHhccHHHHHHHHHHccHHHH
Confidence 3234455557777776654 68899997 4788999998887777777777766543
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.93 E-value=12 Score=43.83 Aligned_cols=225 Identities=17% Similarity=0.229 Sum_probs=111.3
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
++.+...+.+++. .-|+.++.-+..++.... .++..++++.+...|.+.|+.++..|+-.+..+ .
T Consensus 116 ~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p------------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 116 IPDVIKLLSDPSP--YVRKKAALALLKIYRKDP------------DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp HHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCH------------CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHhcCCch--HHHHHHHHHHHHHhccCH------------HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c
Confidence 4445555555543 667777777766665532 233333678899999999999999998888777 5
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhh--hHHHHHHHHh----hHHHHHH-
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQR--DTIIEIFYEK----HLGQLID- 462 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~--d~fL~~FY~~----~~~~L~~- 462 (871)
++|...-..+ ..++..|++. +...++=++..++.+|+.+.-.+ .... ..+++..... ....++.
T Consensus 181 ~~~~~~~~~~-----~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~---~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 181 CNDDSYKSLI-----PKLIRILCQL-LSDPDPWLQIKILRLLRRYAPME---PEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp CTHHHHTTHH-----HHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhH-----HHHHHHhhhc-ccccchHHHHHHHHHHHhcccCC---hhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 5554311100 1122222222 25667766666666666553221 1111 1222222211 1111111
Q ss_pred --HHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHH
Q 002882 463 --VITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRF 540 (871)
Q Consensus 463 --pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF 540 (871)
-+... .....++..++..|.-++.....-+|+..+ ..+..+.......+.-..+++
T Consensus 252 ~~~i~~l-----------------~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L-----~~L~~l~~~~~~~v~~~~~~~ 309 (526)
T PF01602_consen 252 IRLIIKL-----------------SPSPELLQKAINPLIKLLSSSDPNVRYIAL-----DSLSQLAQSNPPAVFNQSLIL 309 (526)
T ss_dssp HHHHHHH-----------------SSSHHHHHHHHHHHHHHHTSSSHHHHHHHH-----HHHHHHCCHCHHHHGTHHHHH
T ss_pred HHHHHHh-----------------hcchHHHHhhHHHHHHHhhcccchhehhHH-----HHHHHhhcccchhhhhhhhhh
Confidence 11110 012225566677777777755555666544 223334333323333222222
Q ss_pred HHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002882 541 VRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (871)
Q Consensus 541 ~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir 591 (871)
+ ++...|+.+.|... ++++..-.+..|.-. -+-||.+|++
T Consensus 310 ~--~l~~~~d~~Ir~~~--------l~lL~~l~~~~n~~~-Il~eL~~~l~ 349 (526)
T PF01602_consen 310 F--FLLYDDDPSIRKKA--------LDLLYKLANESNVKE-ILDELLKYLS 349 (526)
T ss_dssp H--HHHCSSSHHHHHHH--------HHHHHHH--HHHHHH-HHHHHHHHHH
T ss_pred h--eecCCCChhHHHHH--------HHHHhhcccccchhh-HHHHHHHHHH
Confidence 2 44445555554332 444444445555433 7778888884
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=90.81 E-value=40 Score=40.22 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhc-cCChhH-HHHH
Q 002882 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDM-HCQF 427 (871)
Q Consensus 350 ~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~gl-k~Ql 427 (871)
...+...++.|+|+.+-..|.++|.-++..+.|+|..+.. .|. ..+|+.++. ++..|++.+.. +.|+.+ ..-+
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~-g~~yL~~~g---i~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPH-GLQYLEQQG---IFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-Chh-HHHHHHhCC---HHHHHHHHHhccccCCcccchhh
Confidence 3456778889999999999999999999999999999999 444 367887753 45555555544 233301 1112
Q ss_pred HHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccc
Q 002882 428 LEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY 507 (871)
Q Consensus 428 ~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~y 507 (871)
...++.. .+|....-..++. =|...++.|+.-+-. .+.....-.+|-|.+.. ++-
T Consensus 267 ~g~~~f~---g~la~~~~~~v~~-~~p~~~~~l~~~~~s-------------------~d~~~~~~A~dtlg~ig--st~ 321 (503)
T PF10508_consen 267 PGRMKFF---GNLARVSPQEVLE-LYPAFLERLFSMLES-------------------QDPTIREVAFDTLGQIG--STV 321 (503)
T ss_pred hhHHHHH---HHHHhcChHHHHH-HHHHHHHHHHHHhCC-------------------CChhHHHHHHHHHHHHh--CCH
Confidence 2222111 0000000011221 223333444422211 12223334455555443 333
Q ss_pred hhhhHHhhh------hHHHHHHHhhhccchhhHHHHHHHHHHHhcCch
Q 002882 508 RIKCNFLLN------NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549 (871)
Q Consensus 508 riK~~il~~------nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~D 549 (871)
.-|..++.+ +++.++....++...-+++.|+..+-.++....
T Consensus 322 ~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 322 EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 445555222 245555555666666789999999999975543
No 17
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.67 E-value=38 Score=39.24 Aligned_cols=242 Identities=19% Similarity=0.263 Sum_probs=135.8
Q ss_pred cchhhHHhHHHHHHHhHHHHHHHhhCC--HHHHHHHHHHhC----------C-CCCcHHhHHHHHHHHHHHHHhhhccCh
Q 002882 280 LDEATVANLNSIIHGNNAYVVSLLKDD--STFIQELFARLR----------S-PTTLEESKKNLVHFLHEFCGLSKSLQM 346 (871)
Q Consensus 280 LDD~t~s~LnSlI~fNq~eIV~~Lq~d--~~FL~eLF~~l~----------~-~~~~~e~rrd~v~FL~E~c~lsK~LQ~ 346 (871)
.|+..+..+..++.+ ||.+|-.+ ..++.+++..|- + .......++-++.|-.-+|++-|+...
T Consensus 109 ~~~~~L~~~~~l~~~----iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~ 184 (415)
T PF12460_consen 109 LDDRVLELLSRLINL----IVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL 184 (415)
T ss_pred cchHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc
Confidence 566677777666654 56655332 457888887775 1 111224566777788888888888775
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcC--hHHHHHHH-------------------------
Q 002882 347 VQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD--PNLLRSYV------------------------- 399 (871)
Q Consensus 347 ~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~d--P~lvR~~i------------------------- 399 (871)
++-..+.+.+ ++.++...+...|..+.-++..+++-- .+.+..++
T Consensus 185 ~~~~~ll~~l--------~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 185 PDLEELLQSL--------LNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIW 256 (415)
T ss_pred cCHHHHHHHH--------HHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHH
Confidence 5333333333 455666666777777777777777762 22222221
Q ss_pred ------Hhc--CCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC-CCCCch-----hhhHHHHHHHHhhHHHHHHHHH
Q 002882 400 ------VRQ--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS-YTLSGA-----QRDTIIEIFYEKHLGQLIDVIT 465 (871)
Q Consensus 400 ------~~q--e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp-~~m~~~-----e~d~fL~~FY~~~~~~L~~pL~ 465 (871)
+|. .+..+++.|++.| . ++.+...+..++.+|+.. +.+... -|--|=+-||...++.|++..-
T Consensus 257 i~KaLv~R~~~~~~~~~~~L~~lL-~--~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 257 ITKALVMRGHPLATELLDKLLELL-S--SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHh-C--ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 111 1123344444433 1 244455677777777765 332221 2333445566667777766554
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
.... +.-.+.+--|++.+++=|.-+ .-=--..++.=+++-+...+.-++.+++..+..++
T Consensus 334 ~~~~-------------------~~k~~yL~ALs~ll~~vP~~v-l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 334 EADD-------------------EIKSNYLTALSHLLKNVPKSV-LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred hcCh-------------------hhHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3210 011122345666666555322 00111235555666677888889999999999999
Q ss_pred cCchhHHHHHH
Q 002882 546 SRHDEHLINHF 556 (871)
Q Consensus 546 ~l~Defy~ryi 556 (871)
.-+.+....|+
T Consensus 394 ~~~~~~i~~hl 404 (415)
T PF12460_consen 394 EEAPELISEHL 404 (415)
T ss_pred HcCHHHHHHHH
Confidence 88776666554
No 18
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=90.59 E-value=2.1 Score=41.25 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=66.8
Q ss_pred eeEEEEeCC-CCCceeccce-----EEEEEEeCCCcceeEEEEec-CCCcceeEeecCCCCccccccCeEEEecCCCccc
Q 002882 16 RVKVYRLND-DGKWDDQGTG-----HVTVDSMERSEELCLFVIDE-EDNETILLHRISPDDIYRKQEDTIISWRDPEYST 88 (871)
Q Consensus 16 RVKVY~L~~-~~~W~D~GTG-----~~s~~~~e~~~~~~L~V~sE-~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 88 (871)
|..|..-++ .+.|.--|.| .|++-+. .....+.+|--. .++..+++..|.++-.|.+.--+...|.+.+ +
T Consensus 8 rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~-~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~--~ 84 (111)
T cd01207 8 RASVMVYDDSNKKWVPAGGGSQGFSRVQIYHH-PRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDAR--Q 84 (111)
T ss_pred EEEeeEEcCCCCcEEcCCCCCCCcceEEEEEc-CCCCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceeeecCC--e
Confidence 556666654 5679998884 3444332 333444444332 3677899999999999999999999999986 6
Q ss_pred cccccccCccchhHHHHHHHHH
Q 002882 89 ELALSFQEPTGCSYIWDNICNV 110 (871)
Q Consensus 89 DlALSFQe~~GC~~IW~~I~~V 110 (871)
-..|+|+..+.+...-+.|.+.
T Consensus 85 v~GLnF~Se~eA~~F~~~v~~A 106 (111)
T cd01207 85 VYGLNFGSKEDATMFASAMLSA 106 (111)
T ss_pred EEeeccCCHHHHHHHHHHHHHH
Confidence 7899999999998765555443
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.82 E-value=9.7 Score=34.43 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=77.3
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002882 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (871)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ii 388 (871)
.++.|...+.+++ ..-|..++.-|..+|.-+ ......+++.|.++.+-..|.+++..++..+.-.|..+.
T Consensus 8 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~--------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSD--ENVQREAAWALSNLSAGN--------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 3455555555544 467777887777666542 223345567899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002882 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (871)
Q Consensus 389 e~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (871)
...|.. +..+.+. -++..|++.|- +.+..++.+...+|..|
T Consensus 78 ~~~~~~-~~~~~~~---g~l~~l~~~l~-~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 78 AGPEDN-KLIVLEA---GGVPKLVNLLD-SSNEDIQKNATGALSNL 118 (120)
T ss_pred cCcHHH-HHHHHHC---CChHHHHHHHh-cCCHHHHHHHHHHHHHh
Confidence 887753 3333332 26667777654 44778888888887766
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=86.06 E-value=1.1e+02 Score=38.76 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=92.3
Q ss_pred hHhHHHHHHHHHhcCc-------HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002882 346 MVQQLRLFRDLMNEGI-------FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (871)
Q Consensus 346 ~~~r~~lf~~Lv~~GL-------l~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d 418 (871)
+.-|.--.++|..-.. ...|+.+|.+.++-||.+|.=-+.-+...+|+++.. ..++..|.+ |+.|
T Consensus 119 p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~-------~~~~~~L~~-LL~D 190 (746)
T PTZ00429 119 PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ-------QDFKKDLVE-LLND 190 (746)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc-------cchHHHHHH-HhcC
Confidence 3445555555554433 344556677888888887776666677778876432 235566666 6789
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHH
Q 002882 419 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELL 498 (871)
Q Consensus 419 ~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL 498 (871)
.|+++.....-+|..+.... +.+ +... .+++.+|..-|.+ ........|+++|
T Consensus 191 ~dp~Vv~nAl~aL~eI~~~~----~~~---l~l~-~~~~~~Ll~~L~e-------------------~~EW~Qi~IL~lL 243 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVNDYG----SEK---IESS-NEWVNRLVYHLPE-------------------CNEWGQLYILELL 243 (746)
T ss_pred CCccHHHHHHHHHHHHHHhC----chh---hHHH-HHHHHHHHHHhhc-------------------CChHHHHHHHHHH
Confidence 99999877766666664221 111 1111 2222333333321 1234445788888
Q ss_pred HHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 499 CFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 499 ~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
+-......- -..+++.++...++...--++++|+|++=.+.
T Consensus 244 ~~y~P~~~~------e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 244 AAQRPSDKE------SAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HhcCCCCcH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 664432211 12467777777777777788888888766554
No 21
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=85.75 E-value=87 Score=37.44 Aligned_cols=282 Identities=17% Similarity=0.256 Sum_probs=159.8
Q ss_pred HHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 002882 290 SIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 369 (871)
Q Consensus 290 SlI~fNq~eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L 369 (871)
.++.-+..+++++|+..++|+..++.-+..+.. +-||-.+..+=+ +..+..+..-|.+.+|++-+-..|
T Consensus 3 ~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~I--------mDlLLklIs~d~---~~~~~~ilewL~~q~LI~~Li~~L 71 (475)
T PF04499_consen 3 CLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAI--------MDLLLKLISTDK---PESPTGILEWLAEQNLIPRLIDLL 71 (475)
T ss_pred hhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHH--------HHHHHHHHccCc---ccchHHHHHHHHHhCHHHHHHHHh
Confidence 345567779999999999999999999876553 556666665433 556777888888999998888888
Q ss_pred c-CCCcchhhhhhHHHHHHHhcChH-------------HHHHHHHhcCCcchHHHHHHHHhcc-CChhHHHHHHHHHHHh
Q 002882 370 Q-SQDKKLVLTGTDILILFLNQDPN-------------LLRSYVVRQEGIPLLGLLVKGMITD-FGEDMHCQFLEILRSL 434 (871)
Q Consensus 370 ~-~~d~~ir~~atDIL~~iie~dP~-------------lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~glk~Ql~eaLk~L 434 (871)
. ..+..+...|+|+|..||....+ ++|+ +. ....+..|++.|+.+ .+.++ .....++-.|
T Consensus 72 ~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~-L~---S~~~v~~Ll~~mL~~~~~s~l-vn~v~IlieL 146 (475)
T PF04499_consen 72 SPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQ-LV---SEETVEKLLDIMLNSQGGSSL-VNGVSILIEL 146 (475)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHH-Hh---ChHHHHHHHHHHhcCCCcchH-HHHHHHHHHH
Confidence 6 33455677899999888775432 2222 22 234667788888863 33332 2333344444
Q ss_pred cCCCC--------CC----c-hhhh-H----HHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHH
Q 002882 435 LDSYT--------LS----G-AQRD-T----IIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICE 496 (871)
Q Consensus 435 LDp~~--------m~----~-~e~d-~----fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~E 496 (871)
|-..+ +. . .+++ . .|..|-+ +++.+.+-|... + ....-.+.-+......... =.+|||
T Consensus 147 IRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~-~l~~f~~lL~~~-~-~~~~l~Tt~G~l~~PLG~~-RlkI~E 222 (475)
T PF04499_consen 147 IRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSP-RLPDFHKLLLNP-P-KKPPLETTFGVLIPPLGFE-RLKICE 222 (475)
T ss_pred HHhcccccchhhccccccCCCCccchhhHHHHHHHHHH-hHHHHHHHHhch-h-hccccccCCCCCCCCcchH-HHHHHH
Confidence 42111 00 0 1232 2 3333332 234455544432 1 1111011001000000001 136788
Q ss_pred HHHHHHhhccchh------hhHHhhhhHH-HHHHHhhhccchhhHHHHHHHHHHHhc-----------------------
Q 002882 497 LLCFCVLHHPYRI------KCNFLLNNVV-DKVLLLTRRREKYLVVAAVRFVRTILS----------------------- 546 (871)
Q Consensus 497 LL~Fcv~~H~yri------K~~il~~nll-~rVl~Ll~~~~K~L~LaAlRF~R~iI~----------------------- 546 (871)
|++-.......-. ...+...+.. .+... ++.+...-..
T Consensus 223 LiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (475)
T PF04499_consen 223 LIAELLHCSNMSLLNEPKGEEIVYERDGERERLLE------------QLQDALNDLEIDDEDIDDNSMDDESDSSEDSRE 290 (475)
T ss_pred HHHHHHhCCCccccCCccccchhcCcHHHHHHHHH------------HHHhhhhcccCCccccccccccccccCcccccc
Confidence 8776665443321 1112222211 11111 0111100000
Q ss_pred --------------------------------------Cch----hHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHH
Q 002882 547 --------------------------------------RHD----EHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (871)
Q Consensus 547 --------------------------------------l~D----efy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~L 584 (871)
.++ +++..-|+..++|.-++++|..- +=+|.|+..|-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfky-pwNNFLH~~V~ 369 (475)
T PF04499_consen 291 LEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKY-PWNNFLHNVVE 369 (475)
T ss_pred ccccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcC-cchhHHHHHHH
Confidence 011 56888999999999999999876 67799999999
Q ss_pred HHHHHHH-----hhChHHHHHHHHH
Q 002882 585 ELFEYIR-----KENLKSLVKYIVD 604 (871)
Q Consensus 585 ELfe~Ir-----~eNik~Li~hlve 604 (871)
+++-.|- ...-..|+.||++
T Consensus 370 diIqqiln~~~~~~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 370 DIIQQILNGPMDESYNSFLVKHLFE 394 (475)
T ss_pred HHHHHHhCCCCcccccHHHHHHHHh
Confidence 9999998 4556789999985
No 22
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=85.19 E-value=11 Score=43.24 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=96.5
Q ss_pred HHHHHhhCCHHHHHHHHHH---------hCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHH
Q 002882 298 YVVSLLKDDSTFIQELFAR---------LRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 368 (871)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~---------l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~ 368 (871)
-|+.|+-.|..++..+... +.-++....+|-++++|++.|+.+-+..+. +..|+...|-.+
T Consensus 47 RilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~----------~~~~vvralvai 116 (371)
T PF14664_consen 47 RILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE----------IPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc----------CCHHHHHHHHHH
Confidence 3556666777777766651 112333467899999999999998543321 256677777777
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHH
Q 002882 369 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTI 448 (871)
Q Consensus 369 L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~f 448 (871)
..+++...|..+.++|.-+.=.||.++-. -.| +..|++.++. ....+...++.++-.|||.... ..|
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~lv~~----~gG---~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~t-----R~y 183 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPELVAE----CGG---IRVLLRALID-GSFSISESLLDTLLYLLDSPRT-----RKY 183 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHHHHHH----cCC---HHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcch-----hhh
Confidence 77889999999999999999999998643 223 2344554444 2233777788888888886532 122
Q ss_pred HHHHHHhhHHHHHHHHHhc
Q 002882 449 IEIFYEKHLGQLIDVITAS 467 (871)
Q Consensus 449 L~~FY~~~~~~L~~pL~~~ 467 (871)
+..- .-+..|++|+.+.
T Consensus 184 l~~~--~dL~~l~apftd~ 200 (371)
T PF14664_consen 184 LRPG--FDLESLLAPFTDF 200 (371)
T ss_pred hcCC--ccHHHHHHhhhhh
Confidence 2222 2367888988763
No 23
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=83.41 E-value=5.1 Score=39.12 Aligned_cols=90 Identities=18% Similarity=0.345 Sum_probs=61.3
Q ss_pred eeEEEEeC-CCCCceeccc---eEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccc
Q 002882 16 RVKVYRLN-DDGKWDDQGT---GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELA 91 (871)
Q Consensus 16 RVKVY~L~-~~~~W~D~GT---G~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlA 91 (871)
-|=||..+ ..++|...|. -|+.. .......+++|.+-.+.+.+.+ .|.++..++-|++- |.|+... +.-++
T Consensus 28 ~v~vY~f~~~~~~W~K~~iEG~LFv~~--r~~~p~~~~~vlNR~~~~n~~~-~i~~~~~~e~~~~~-l~~r~~~-~~I~G 102 (122)
T PF06058_consen 28 HVVVYKFDHETNEWEKTDIEGTLFVYK--RSSSPRYGLIVLNRRSTENFVE-PITPDLDFELQDPY-LIYRNDN-QEIYG 102 (122)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEEE--EETTS-ECEEEEESSSS--EEE-EE-SGGGEEEETTE-EEEEETT-TEEEE
T ss_pred eEEEEeecCCCCcEeecCcEeeEEEEE--eecccceEEEEecCCCCCceee-ecCCCcEEEEeCCE-EEEEcCC-ceEEE
Confidence 47899986 4689998764 33321 1223446788887776665544 38888899966665 5556554 57899
Q ss_pred ccccCccchhHHHHHHHHH
Q 002882 92 LSFQEPTGCSYIWDNICNV 110 (871)
Q Consensus 92 LSFQe~~GC~~IW~~I~~V 110 (871)
+-|-+.+-|..|.+.+..+
T Consensus 103 iWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 103 IWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp EEESSHHHHHHHHHHHHHH
T ss_pred EEEEeHHHHHHHHHHHHhc
Confidence 9999999999998887654
No 24
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=81.76 E-value=13 Score=35.66 Aligned_cols=92 Identities=15% Similarity=0.273 Sum_probs=74.9
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccccc
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALS 93 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALS 93 (871)
.=|.||.-.. .+.|.-..+|-+............|-+.+-..+..+.+..|-.+=.|+++.....++.-.+ .-++|+
T Consensus 10 aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqElY~~f~y~~~r~fFhtFe~d~--c~~GL~ 87 (105)
T cd01205 10 AVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKANRIIWEQELYDNFEYQQPRPFFHTFEGDD--CVVGLN 87 (105)
T ss_pred EEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccCCcEEEEEEcccCcEEccCCCcEEEEeccC--cEEEEE
Confidence 3488999854 3899999999998775433456888899988888899999999999999999999998653 678999
Q ss_pred ccCccchhHHHHHHH
Q 002882 94 FQEPTGCSYIWDNIC 108 (871)
Q Consensus 94 FQe~~GC~~IW~~I~ 108 (871)
|=+..-+......+.
T Consensus 88 Fade~EA~~F~k~v~ 102 (105)
T cd01205 88 FADETEAAEFRKKVL 102 (105)
T ss_pred ECCHHHHHHHHHHHH
Confidence 998888777666553
No 25
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=81.43 E-value=1.6e+02 Score=37.12 Aligned_cols=112 Identities=15% Similarity=0.309 Sum_probs=61.6
Q ss_pred HHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh--cCh-HHHHHH-------HHhcCCcchHHHHHHHHhc-cCChhH
Q 002882 355 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN--QDP-NLLRSY-------VVRQEGIPLLGLLVKGMIT-DFGEDM 423 (871)
Q Consensus 355 ~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie--~dP-~lvR~~-------i~~qe~~~Ll~~Li~~ll~-d~d~gl 423 (871)
.+++.|+++.|-.+|.+.+..+...++-.|--+-- .+- .|...- ++..+...+...-++.|.+ .+|+++
T Consensus 285 kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 285 KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 45788999999999988887766655555432211 111 111111 1112334566666677776 678888
Q ss_pred HHHHHH-----HHHHhcCCCCCC-----------chhhhHHHHHHHHhhHHHHHHHHHhc
Q 002882 424 HCQFLE-----ILRSLLDSYTLS-----------GAQRDTIIEIFYEKHLGQLIDVITAS 467 (871)
Q Consensus 424 k~Ql~e-----aLk~LLDp~~m~-----------~~e~d~fL~~FY~~~~~~L~~pL~~~ 467 (871)
+.++.. .|-.||...+.. ..++ .--.|=|..|++.|++-|+..
T Consensus 365 R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhC
Confidence 777765 344455433210 0011 112234567888888887764
No 26
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=79.54 E-value=47 Score=40.38 Aligned_cols=140 Identities=21% Similarity=0.278 Sum_probs=75.3
Q ss_pred cccchhhHHhHHHHHHHhHHH-HHHHhhCCHHHHHHHHH----HhCCCCCcHHhHHHHHHH--HHHHHHhh-hccChHhH
Q 002882 278 RVLDEATVANLNSIIHGNNAY-VVSLLKDDSTFIQELFA----RLRSPTTLEESKKNLVHF--LHEFCGLS-KSLQMVQQ 349 (871)
Q Consensus 278 R~LDD~t~s~LnSlI~fNq~e-IV~~Lq~d~~FL~eLF~----~l~~~~~~~e~rrd~v~F--L~E~c~ls-K~LQ~~~r 349 (871)
++|-.+. ++=|++.+---+. ++..|..++.|+..+-. .+.+ |.+.|.+ -+-+|++| +|..++
T Consensus 230 ~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~-------k~emV~lE~Ar~v~~~~~~nv~~~-- 299 (898)
T COG5240 230 EHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSD-------KFEMVFLEAARAVCALSEENVGSQ-- 299 (898)
T ss_pred HHhhccc-ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcC-------cchhhhHHHHHHHHHHHHhccCHH--
Confidence 3333333 4445544444443 44567777776554433 3333 1222211 23455555 343322
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHH------HHhcC---------------C----
Q 002882 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSY------VVRQE---------------G---- 404 (871)
Q Consensus 350 ~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~------i~~qe---------------~---- 404 (871)
++.. ...+++..|..+....|.+|.-||.-+..-.|..|... ++..+ |
T Consensus 300 --~~~~-----~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~ 372 (898)
T COG5240 300 --FVDQ-----TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEET 372 (898)
T ss_pred --HHHH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhh
Confidence 2222 23567777888888888888888887777777654321 11111 1
Q ss_pred c-chHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 405 I-PLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 405 ~-~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
. .|+ -+|-.|+.|-+.|.|.-+.+|+|.|-
T Consensus 373 idrLv-~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 373 IDRLV-NLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred HHHHH-HHHHHHHHhhccCceEEeHHHHHHHH
Confidence 1 122 23444566777888888888998884
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=78.67 E-value=80 Score=32.84 Aligned_cols=186 Identities=15% Similarity=0.154 Sum_probs=100.1
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHH
Q 002882 318 RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRS 397 (871)
Q Consensus 318 ~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~ 397 (871)
+.++.+=+.|.+++.-|+.++.-. ........++..|- .++..|...+.+....+...|+..+..+..+-..-+..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 445556678899999999888755 11122233333333 67777777888888888888898888877665544443
Q ss_pred HHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH-HHHHHhcCCCcccccc
Q 002882 398 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL-IDVITASCPQEGIAQS 476 (871)
Q Consensus 398 ~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L-~~pL~~~~p~e~~~~~ 476 (871)
++ ..++..|++.+ .+...-++....++|..+...-++. ..+ +..+...+.
T Consensus 91 ~~-----~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~----------------~~~~~~~l~~~~~------- 141 (228)
T PF12348_consen 91 YA-----DILLPPLLKKL-GDSKKFIREAANNALDAIIESCSYS----------------PKILLEILSQGLK------- 141 (228)
T ss_dssp HH-----HHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H------------------HHHHHHHHHHTT-------
T ss_pred HH-----HHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcH----------------HHHHHHHHHHHHh-------
Confidence 32 12334444333 3344556666777777776543310 222 222222110
Q ss_pred cCCCCcccCCcHHHHHHHHHHHHHHHhhcc---chhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHH
Q 002882 477 ASSGGRVESTKPEILSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 544 (871)
Q Consensus 477 ~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~---yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~i 544 (871)
...+.+=...++.|..++..|+ -.+........+..-+.+++.-.+.-++-+|-++|..+
T Consensus 142 --------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 142 --------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp ---------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 1233444677889999999998 44444444466777788888888888888888887775
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=73.71 E-value=4e+02 Score=37.69 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=149.1
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 002882 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (871)
Q Consensus 358 ~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 437 (871)
..|-++.|...|.+++..++..|+.+|..+....+.... .++..+..+.+ +.. +...+..++.+..-+|-.|...
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~-avv~agaIpPL---V~L-Lss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE-SLATDEIINPC---IKL-LTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH-HHHHcCCHHHH---HHH-HhcCChHHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999999998888544 45555544333 332 3456777888888888888752
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhh
Q 002882 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (871)
Q Consensus 438 ~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n 517 (871)
+...++-.+.+ ..+++-|++.|... ...+-...++.|..++.+..- +.-+...+
T Consensus 682 --~~~~q~~~~v~---~GaV~pL~~LL~~~-------------------d~~v~e~Al~ALanLl~~~e~--~~ei~~~~ 735 (2102)
T PLN03200 682 --IKENRKVSYAA---EDAIKPLIKLAKSS-------------------SIEVAEQAVCALANLLSDPEV--AAEALAED 735 (2102)
T ss_pred --CCHHHHHHHHH---cCCHHHHHHHHhCC-------------------ChHHHHHHHHHHHHHHcCchH--HHHHHhcC
Confidence 21112221111 23556666655321 234556677888888887764 34566788
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcC--chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh---
Q 002882 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK--- 592 (871)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l--~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~--- 592 (871)
.+....++|++...-.+=.|.+-+-.+... -|+-+-.|+-..+...|+++.|... +-+|..+|-.||-+.++-+
T Consensus 736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~~~~~al~~l~~l~~~~~ 814 (2102)
T PLN03200 736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSSATSEALEALALLARTKG 814 (2102)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-CcchhhHHHHHHHHHHHHhhcc
Confidence 899999999988776676777766664433 3455678999999999999988654 5668888888998888865
Q ss_pred ----------------hChHHHHHHHH
Q 002882 593 ----------------ENLKSLVKYIV 603 (871)
Q Consensus 593 ----------------eNik~Li~hlv 603 (871)
+++.+|+.+|-
T Consensus 815 ~~~~~~~~~~~~~e~p~~l~~l~~~l~ 841 (2102)
T PLN03200 815 GANFSHPPWAVLAEVPSSLEPLVRCLA 841 (2102)
T ss_pred cCCCCCCchhhHHhccCchHHHHHHHH
Confidence 56778877773
No 29
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.54 E-value=2e+02 Score=34.23 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=117.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchh------hhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc-CChh
Q 002882 350 LRLFRDLMNEGIFDIVTDALQSQDKKLV------LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD-FGED 422 (871)
Q Consensus 350 ~~lf~~Lv~~GLl~vi~~~L~~~d~~ir------~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~g 422 (871)
..|+.+|++.+++..+---+..=|.+++ ....-++..+++.+|++.-. +++| .|+.+|...+... .-.+
T Consensus 166 evLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~-~~e~---~ll~WLL~rl~~k~~f~a 241 (536)
T KOG2734|consen 166 EVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTE-IVEQ---GLLSWLLKRLKGKAAFDA 241 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHH-HHHh---hHHHHHHHHHhcccCcch
Confidence 3689999999999888777654444432 22334556788888885443 4454 5777777654332 3345
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHH
Q 002882 423 MHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCV 502 (871)
Q Consensus 423 lk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv 502 (871)
-+.-.+|+|-+||...+-.. .+-.-| ..++.|+.-|.. ... .. + . +.-..++..++.+-||-|+
T Consensus 242 Nk~YasEiLaillq~s~e~~-~~~~~l-----~GiD~lL~~la~----yk~-~d--P-~--~~~E~EmmeNLFdcLCs~l 305 (536)
T KOG2734|consen 242 NKQYASEILAILLQNSDENR-KLLGPL-----DGIDVLLRQLAV----YKR-HD--P-A--TVDEEEMMENLFDCLCSLL 305 (536)
T ss_pred hHHHHHHHHHHHhccCchhh-hhhcCc-----ccHHHHHhhcch----hhc-cC--C-C--CcCHHHHHHHHHHHHHHHh
Confidence 56677899999997654210 000000 112333333321 111 00 0 0 1124568889999999998
Q ss_pred hhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCch-hHHHHHHHhcCChHHHHHHHHHh
Q 002882 503 LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAFVAN 572 (871)
Q Consensus 503 ~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~D-efy~ryiIk~nLf~PIl~~f~~n 572 (871)
++-.-| +.|..-+.+-...+.+ +- .|..+=+|+|++-.+..-.| .=+..-++.--=++.||-+|...
T Consensus 306 m~~~nr-~~Fl~~EGlqLm~Lml-r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~ 373 (536)
T KOG2734|consen 306 MAPANR-ERFLKGEGLQLMNLML-RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKT 373 (536)
T ss_pred cChhhh-hhhhccccHHHHHHHH-HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhC
Confidence 877655 3344444444444443 22 68888999999998875555 13444456666678888888743
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=72.70 E-value=15 Score=33.20 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=54.6
Q ss_pred HhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002882 513 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 589 (871)
Q Consensus 513 il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~ 589 (871)
+...+++..++.++...+..++..|++.+..+....+ -+..++++.+.+.++++++... ...+...|+-=|-.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 3456688889999998888999999999999765544 4666888899999999988652 334555554444333
No 31
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=69.41 E-value=28 Score=40.55 Aligned_cols=232 Identities=28% Similarity=0.385 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHh---hcChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcCC----hhhHHHHHHH---HHHHHhcCChhh
Q 002882 139 LSTLPLILKTVT---ESGIADQMRLTELILNDQDFFRKLMDLFRICEDLEN----IDGLHMIFKI---IKGIILLNSPQI 208 (871)
Q Consensus 139 l~nL~eIl~~i~---~~s~~~r~rla~~Il~~~~YI~kLl~LF~~cEdle~----~~~Lh~L~~I---vK~IilLNd~~I 208 (871)
+..|...-+.+. .+..+++.--.++| |+.++-||++||+. ||-.- ..-||++|-= -|..|...-+.|
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yi--d~~FvlkLLdLFdS-EDpRERe~LKT~LhrIygKfl~~r~firk~iNNi 222 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYI--DQKFVLKLLDLFDS-EDPREREFLKTILHRIYGKFLVHRPFIRKSINNI 222 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHh--hHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcch
Confidence 456665544432 33444544334444 67999999999964 32222 3456666551 222333333333
Q ss_pred Hhhhh-cc------hhHhHHhhhcccCCCCCCccchhHhhhhcCCceeeeecCChHHHHHHHhh--h-eeeee-eehhcc
Q 002882 209 FEKIF-GD------ELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQT--Y-RVGYL-KDVVLA 277 (871)
Q Consensus 209 iE~ll-sD------e~i~~VvG~LEYDPe~p~~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqt--Y-RLqYL-KDVVLp 277 (871)
|=.++ +- .-+++++|+..-.=++|-+..|.-||.+ =+||+.-+-=..--||- | =+||+ ||-=|+
T Consensus 223 f~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~r-----vLipLhk~k~l~~yh~QLaYcivQfveKd~kl~ 297 (457)
T KOG2085|consen 223 FLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVR-----VLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLT 297 (457)
T ss_pred hhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHH-----hhhccccCCCccccccccceeeeeeeccCcccc
Confidence 32222 22 3367889999989999988899999953 23454322111111110 0 01222 221111
Q ss_pred cccchhhHHhHHHHHHHhHHHHHHHhh--------CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHH--HHhhhccChH
Q 002882 278 RVLDEATVANLNSIIHGNNAYVVSLLK--------DDSTFIQELFARLRSPTTLEESKKNLVHFLHEF--CGLSKSLQMV 347 (871)
Q Consensus 278 R~LDD~t~s~LnSlI~fNq~eIV~~Lq--------~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~--c~lsK~LQ~~ 347 (871)
|. -|-.+|+ ..-.||.||=.++.--+.+.-.|-..=+ .+|+ |--|-+.|..
T Consensus 298 ----~~--------------VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PL-f~qia~c~sS~HFQVA 358 (457)
T KOG2085|consen 298 ----ET--------------VIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPL-FRQIARCVSSPHFQVA 358 (457)
T ss_pred ----HH--------------HHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHH-HHHHHHHcCChhHHHH
Confidence 11 0222222 1124777766666543333333333333 3332 3334566777
Q ss_pred hHHHHH------HHHHhcC---cHHHHHHHHc-----CCCcchhhhhhHHHHHHHhcChHHHHH
Q 002882 348 QQLRLF------RDLMNEG---IFDIVTDALQ-----SQDKKLVLTGTDILILFLNQDPNLLRS 397 (871)
Q Consensus 348 ~r~~lf------~~Lv~~G---Ll~vi~~~L~-----~~d~~ir~~atDIL~~iie~dP~lvR~ 397 (871)
.|..+| .+|+.+. +++++-.+|- |=+..+......++-+++|.||.+.-.
T Consensus 359 EraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee 422 (457)
T KOG2085|consen 359 ERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE 422 (457)
T ss_pred HHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 776655 3455432 5555555552 335567777888888899999876544
No 32
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=68.86 E-value=5e+02 Score=36.81 Aligned_cols=224 Identities=16% Similarity=0.153 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002882 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (871)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ 386 (871)
..+++-|...+++.+ ..-|.+++.-|..++.. . ..-..++..|-++.|-.+|++.+...|..|.-+|.+
T Consensus 57 aGaIP~LV~lL~sg~--~~vk~nAaaaL~nLS~~-----e----~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~s 125 (2102)
T PLN03200 57 SQAMPLLVSLLRSGT--LGAKVNAAAVLGVLCKE-----E----DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYA 125 (2102)
T ss_pred cCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcC-----H----HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677777776543 34556666555554422 1 222344568999999999999999999999999988
Q ss_pred HHhcCh-HHHHHHHHhcCCcchHHHHHHHHhc--cCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHH
Q 002882 387 FLNQDP-NLLRSYVVRQEGIPLLGLLVKGMIT--DFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLID 462 (871)
Q Consensus 387 iie~dP-~lvR~~i~~qe~~~Ll~~Li~~ll~--d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~ 462 (871)
+..++. ...|..++..+|. +..|++.+-. -.|..++....-+|+.|..... .+-...- ...++.|+.
T Consensus 126 LS~~~~~D~~~~~I~v~~Ga--Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e-------n~~~~IIeaGaVp~LV~ 196 (2102)
T PLN03200 126 VSSGGLSDHVGSKIFSTEGV--VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD-------GFWSATLEAGGVDILVK 196 (2102)
T ss_pred HHcCcchhhhhhhhhhhcCC--hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc-------chHHHHHHcCCHHHHHH
Confidence 887764 3345444443443 1122333221 1244566666778888764331 1222211 245677766
Q ss_pred HHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhcc-chhhHHHHHHHH
Q 002882 463 VITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFV 541 (871)
Q Consensus 463 pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~-~K~L~LaAlRF~ 541 (871)
-|.+. .+.+..+.+.+|+-...+++ ..+.-++..+.+..++.|+++. +.-++-.|+-.+
T Consensus 197 LLsS~-------------------d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 197 LLSSG-------------------NSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred HHcCC-------------------CHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 66321 12333455665554444443 2567788899999999999764 457788888888
Q ss_pred HHHhcCchhHHHHHHHhcCChHHHHHHHHH
Q 002882 542 RTILSRHDEHLINHFVKNNLLKPIVDAFVA 571 (871)
Q Consensus 542 R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ 571 (871)
+++.+ ++.-+.+.+++.|-..|+++++..
T Consensus 257 ~nLAs-~s~e~r~~Iv~aGgIp~LI~lL~s 285 (2102)
T PLN03200 257 EALSS-QSKEAKQAIADAGGIPALINATVA 285 (2102)
T ss_pred HHHhc-CCHHHHHHHHHCCCHHHHHHHHhC
Confidence 88776 455588899999999999998863
No 33
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=68.40 E-value=31 Score=33.34 Aligned_cols=95 Identities=18% Similarity=0.305 Sum_probs=69.8
Q ss_pred CeeEEEEeCCC--CCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccccc
Q 002882 15 QRVKVYRLNDD--GKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELAL 92 (871)
Q Consensus 15 rRVKVY~L~~~--~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlAL 92 (871)
-|..|+..++. ..|.--|.|-+.+.+.-+...-..-|.+-++...|+...|.++-.|-+=-.+.=.|.|+..++=+.|
T Consensus 9 arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~~~~iINc~i~~~~~y~kas~~FhQWrD~R~~tVyGL 88 (111)
T cd01206 9 TRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGGTKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGL 88 (111)
T ss_pred eeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecCcEEEEeccccCCcceeecccccccccccccceeeec
Confidence 47788888763 3899999988877654333222233333445678899999999999999999999999986688899
Q ss_pred cccCccchhHHHHHHHH
Q 002882 93 SFQEPTGCSYIWDNICN 109 (871)
Q Consensus 93 SFQe~~GC~~IW~~I~~ 109 (871)
+|..+++-+..=+.+.+
T Consensus 89 nF~Sk~ea~~F~~~f~~ 105 (111)
T cd01206 89 GFSSEQQLTKFAEKFQE 105 (111)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99998876654333333
No 34
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=66.21 E-value=2.4e+02 Score=32.22 Aligned_cols=172 Identities=16% Similarity=0.202 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH----HHHHHHhc-C-------------CcchH-HH
Q 002882 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNL----LRSYVVRQ-E-------------GIPLL-GL 410 (871)
Q Consensus 350 ~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~l----vR~~i~~q-e-------------~~~Ll-~~ 410 (871)
.+++..+.++|++..+-..|..=+-..|..++.|+..++-+.+.. ...|+.++ + +..+. +.
T Consensus 66 ~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ 145 (335)
T PF08569_consen 66 AQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGD 145 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHH
Confidence 578888888888888888888777777777777777766665322 34455543 2 11111 11
Q ss_pred ----------HHHHHhc------------cCChhHHHHHHHHHHHhcCCCCCCchhh---hHHHHHHHHhhHHHHHHHHH
Q 002882 411 ----------LVKGMIT------------DFGEDMHCQFLEILRSLLDSYTLSGAQR---DTIIEIFYEKHLGQLIDVIT 465 (871)
Q Consensus 411 ----------Li~~ll~------------d~d~glk~Ql~eaLk~LLDp~~m~~~e~---d~fL~~FY~~~~~~L~~pL~ 465 (871)
+++.++. ..+-.+.+-.+..+|.||-. ++ .+||..-|+.... .+.-|+
T Consensus 146 mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~------hk~~~a~fl~~n~d~ff~-~~~~Ll 218 (335)
T PF08569_consen 146 MLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR------HKKLVAEFLSNNYDRFFQ-KYNKLL 218 (335)
T ss_dssp HHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS------SHHHHHHHHHHTHHHHHH-HHHHHC
T ss_pred HHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHH-HHHHHc
Confidence 1111111 11222233333333333211 12 2566555555554 233333
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchh-hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHH
Q 002882 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTI 544 (871)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri-K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~i 544 (871)
.+ + + -.++.+-+-.|-||| ...|.+.+ ..||-+.+-+.-++.||+.+.|.++.-|...||-.
T Consensus 219 ~s--~--------N----YvtkrqslkLL~ell---ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 219 ES--S--------N----YVTKRQSLKLLGELL---LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp T---S--------S----HHHHHHHHHHHHHHH---HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred cC--C--------C----eEeehhhHHHHHHHH---HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 31 0 0 012334444444443 34555554 67777777889999999999999999998888754
Q ss_pred h
Q 002882 545 L 545 (871)
Q Consensus 545 I 545 (871)
|
T Consensus 282 V 282 (335)
T PF08569_consen 282 V 282 (335)
T ss_dssp H
T ss_pred H
Confidence 4
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.21 E-value=3.2e+02 Score=33.20 Aligned_cols=200 Identities=17% Similarity=0.184 Sum_probs=121.4
Q ss_pred HHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 002882 353 FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 432 (871)
Q Consensus 353 f~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk 432 (871)
.+..++.|-.+++-..|.++...++--|+=-|-.|+-+.|. .|.|++.... +.-|..++.......+.-+++=+|.
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~---l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGA---LDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcc---hHHHHHHhccccchHHHHHHHHHHH
Confidence 34557778888888888888888877666666666655555 6888877532 2233333333333455556666666
Q ss_pred HhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhH
Q 002882 433 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 512 (871)
Q Consensus 433 ~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~ 512 (871)
-|.-..+-..+ -+. -...++.|+.-|. ..+++++...|=.|+|.+-+-.-.|. .
T Consensus 221 Nlcrgk~P~P~-~~~-----v~~iLp~L~~ll~-------------------~~D~~Vl~Da~WAlsyLsdg~ne~iq-~ 274 (514)
T KOG0166|consen 221 NLCRGKNPSPP-FDV-----VAPILPALLRLLH-------------------STDEEVLTDACWALSYLTDGSNEKIQ-M 274 (514)
T ss_pred HHHcCCCCCCc-HHH-----HHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhcCChHHHH-H
Confidence 66543331111 010 0112233333222 23556777778888887766666554 4
Q ss_pred HhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHH
Q 002882 513 FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (871)
Q Consensus 513 il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~L 584 (871)
++.-.++.|+..||....--++..|||-+=+|+ ..++.-...+|..++|.-+. .+..+.+..++--.||-
T Consensus 275 vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv-tG~d~QTq~vi~~~~L~~l~-~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 275 VIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV-TGSDEQTQVVINSGALPVLS-NLLSSSPKESIKKEACW 344 (514)
T ss_pred HHHccchHHHHHHHcCCCcccccHHHhhcccee-eccHHHHHHHHhcChHHHHH-HHhccCcchhHHHHHHH
Confidence 677778899998888777777789999888844 55666777777777775444 44444455554444554
No 36
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.18 E-value=4.6e+02 Score=34.73 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=23.7
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCch
Q 002882 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 549 (871)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~D 549 (871)
++.-|-..+.++....+-+||+|+|.+|..-.
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC
Confidence 33444455778888899999999999886533
No 37
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=62.23 E-value=2.7e+02 Score=31.39 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=90.7
Q ss_pred HHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC----CC
Q 002882 298 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS----QD 373 (871)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~----~d 373 (871)
.|+..|-++. ++.++.-+.+.. .....-++..|.+++.+.. ...-.++|+.+ +. =++++...+.. ..
T Consensus 48 ~l~~~iL~~~--~k~lyr~L~~~~--~~~~~~~LrLL~~iv~f~~---g~~a~~v~~~f-d~-~~~~l~kll~~~~~~~~ 118 (330)
T PF11707_consen 48 ELIRSILQNH--LKLLYRSLSSSK--PSLTNPALRLLTAIVSFDG---GALAREVLRSF-DF-SLKSLPKLLTPRKKEKE 118 (330)
T ss_pred HHHHHHHHHH--HHHHHHHhCcCc--HHHHHHHHHHHHHHHccCC---HHHHHHHHHhc-CC-chhhHHHHhcccccccc
Confidence 4455544332 777777776554 2334467777777776321 11122344443 11 12233333321 11
Q ss_pred ---------cchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH-hcCCCCCCch
Q 002882 374 ---------KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS-LLDSYTLSGA 443 (871)
Q Consensus 374 ---------~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~-LLDp~~m~~~ 443 (871)
+.+|....+.+++++.+-+..+|..++.+.+. +..+.+.|-.| +..+-.++.+.|+. +|......-.
T Consensus 119 ~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~--~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~ 195 (330)
T PF11707_consen 119 KDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKL--MSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRS 195 (330)
T ss_pred ccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCch--HHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChh
Confidence 28999999999999998877777777776443 88888888774 56676788888873 4444454333
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHh
Q 002882 444 QRDTIIEIFYEKHLGQLIDVITA 466 (871)
Q Consensus 444 e~d~fL~~FY~~~~~~L~~pL~~ 466 (871)
.| ..+|=+.++.+|.+ |+.
T Consensus 196 ~K---~~~fn~~~L~~l~~-Ly~ 214 (330)
T PF11707_consen 196 TK---CKLFNEWTLSQLAS-LYS 214 (330)
T ss_pred hh---hhhcCHHHHHHHHH-Hhc
Confidence 33 44555667777777 555
No 38
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.64 E-value=33 Score=40.89 Aligned_cols=275 Identities=17% Similarity=0.213 Sum_probs=154.9
Q ss_pred HhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChH-----hHHHHHHHHHhcCcH-HHHHH
Q 002882 294 GNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMV-----QQLRLFRDLMNEGIF-DIVTD 367 (871)
Q Consensus 294 fNq~eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~-----~r~~lf~~Lv~~GLl-~vi~~ 367 (871)
-....|++.|.+ ..+++.|...|. |..+.+....+..||+++..++.+-+.. .-..|-+.|++.-.+ ..+..
T Consensus 49 ~~~~~ilewL~~-q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~ 126 (475)
T PF04499_consen 49 ESPTGILEWLAE-QNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDI 126 (475)
T ss_pred cchHHHHHHHHH-hCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHH
Confidence 355689999987 679999999997 7778888899999999999999865332 225688889887755 46688
Q ss_pred HHcCCCcchhhhhhHHHHHHHhcChHHHHHH----HHhcC----Cc----chHH-------HHHHHHhccC---------
Q 002882 368 ALQSQDKKLVLTGTDILILFLNQDPNLLRSY----VVRQE----GI----PLLG-------LLVKGMITDF--------- 419 (871)
Q Consensus 368 ~L~~~d~~ir~~atDIL~~iie~dP~lvR~~----i~~qe----~~----~Ll~-------~Li~~ll~d~--------- 419 (871)
+|.......-..|+.|++.+|....+-.-.. ....+ +. .++. -+.++|....
T Consensus 127 mL~~~~~s~lvn~v~IlieLIRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~ 206 (475)
T PF04499_consen 127 MLNSQGGSSLVNGVSILIELIRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTF 206 (475)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCC
Confidence 8864446777888999998886553321110 00110 11 1111 1223333220
Q ss_pred -----ChhH-HHHHHHHHHHhcCCCCCCch----------hhhHHHHHHHHhhHHHHHHHHHhcCCCcccc--c--cc--
Q 002882 420 -----GEDM-HCQFLEILRSLLDSYTLSGA----------QRDTIIEIFYEKHLGQLIDVITASCPQEGIA--Q--SA-- 477 (871)
Q Consensus 420 -----d~gl-k~Ql~eaLk~LLDp~~m~~~----------e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~--~--~~-- 477 (871)
-.|. +-.++|.+-.||...+|..- +||....---+. +..+...+... ...... . ..
T Consensus 207 G~l~~PLG~~RlkI~ELiAeLLhcsNm~LlN~~~~~~~~~~rd~~r~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 284 (475)
T PF04499_consen 207 GVLIPPLGFERLKICELIAELLHCSNMSLLNEPKGEEIVYERDGERERLLEQ-LQDALNDLEID-DEDIDDNSMDDESDS 284 (475)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhCCCccccCCccccchhcCcHHHHHHHHHH-HHhhhhcccCC-ccccccccccccccC
Confidence 1232 56789999999999998531 455444332222 23333332210 000000 0 00
Q ss_pred -CCCC--cccCCc---------------HHH-HHHHHHHHHHHHhhcc---chhhhHHhhhhHHHHHHHhhh--ccchhh
Q 002882 478 -SSGG--RVESTK---------------PEI-LSNICELLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTR--RREKYL 533 (871)
Q Consensus 478 -~~~~--~~~~~~---------------~~l-l~~l~ELL~Fcv~~H~---yriK~~il~~nll~rVl~Ll~--~~~K~L 533 (871)
.... .+.... .+. -...++.-.=-.+.-+ -.+|.-++..+++..++-|.- +-+-||
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFL 364 (475)
T PF04499_consen 285 SEDSRELEVSNDSSDSEEEDESDEDSEDEEEEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFL 364 (475)
T ss_pred ccccccccccccccccccccCCccccccccccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHH
Confidence 0000 000000 000 0001111000011111 136777888889999988853 567899
Q ss_pred HHHHHHHHHHHhcCc-----hhHHHHHH-HhcCChHHHHHHHHHh
Q 002882 534 VVAAVRFVRTILSRH-----DEHLINHF-VKNNLLKPIVDAFVAN 572 (871)
Q Consensus 534 ~LaAlRF~R~iI~l~-----Defy~ryi-Ik~nLf~PIl~~f~~n 572 (871)
....-.++..|+... ..++..++ .+.+|..=|++....+
T Consensus 365 H~~V~diIqqiln~~~~~~~n~~L~~~Lf~~~~l~~~Il~~~~~~ 409 (475)
T PF04499_consen 365 HNVVEDIIQQILNGPMDESYNSFLVKHLFEDCDLTDRILEGWKEN 409 (475)
T ss_pred HHHHHHHHHHHhCCCCcccccHHHHHHHHhhccHHHHHHHhhhhc
Confidence 999999999999332 23443333 4677777788877664
No 39
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.61 E-value=1.6e+02 Score=30.92 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=98.8
Q ss_pred chhhhhhHHHHHHHhc-ChHHHHHHHHh----c--CCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC--Cch--
Q 002882 375 KLVLTGTDILILFLNQ-DPNLLRSYVVR----Q--EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL--SGA-- 443 (871)
Q Consensus 375 ~ir~~atDIL~~iie~-dP~lvR~~i~~----q--e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m--~~~-- 443 (871)
++|..|.-.|..++.+ +|-.+-+|-.. . .+..---.|...++.|.++.++.-...+|..|||.... ..+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4788888889999998 87766666432 1 01111123444567899999999999999999986421 001
Q ss_pred ---hhhHHHHHHHH--hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccc-hhhhHHhhhh
Q 002882 444 ---QRDTIIEIFYE--KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPY-RIKCNFLLNN 517 (871)
Q Consensus 444 ---e~d~fL~~FY~--~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~y-riK~~il~~n 517 (871)
.+-.|..+.-. ..+-.|=.-|... .. ....+.++.+++..|+-.|+.=+| |++. =+-..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~-----L~---------~E~~~~~l~q~lK~la~Lv~~tPY~rL~~-~ll~~ 145 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLA-----LQ---------AEKSPPVLTQLLKCLAVLVQATPYHRLPP-GLLTE 145 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHH-----Hh---------cccccHHHHHHHHHHHHHHccCChhhcCH-hHHHH
Confidence 11234443221 1111111111110 00 112446788999999999999999 4443 22234
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002882 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (871)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~ 548 (871)
++..|..++..++.-.+++|+=+|..+++..
T Consensus 146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 146 VVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 5566667788899999999999999888764
No 40
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=55.53 E-value=2e+02 Score=29.70 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=71.3
Q ss_pred HHHHHHHhcCcH-----------HHHHHHHcCC-CcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002882 351 RLFRDLMNEGIF-----------DIVTDALQSQ-DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (871)
Q Consensus 351 ~lf~~Lv~~GLl-----------~vi~~~L~~~-d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d 418 (871)
.-|..|++||+. +++.++-+.. |..+...+..||-.++..+|.+ .+.+.+ ..-+..|+..|-.
T Consensus 39 ~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~---evt~~~Li~hLq~- 113 (160)
T PF11841_consen 39 TAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQ---EVTLESLIRHLQV- 113 (160)
T ss_pred HHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhc---cCCHHHHHHHHHc-
Confidence 357778888873 2444444444 7888899999999999988874 333333 3455677777766
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 002882 419 FGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 460 (871)
Q Consensus 419 ~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L 460 (871)
.++.++.-.+..|-+|+=-. +..+|.++.+.|..+.+...
T Consensus 114 ~~~~iq~naiaLinAL~~kA--~~~~r~~i~~~l~~k~~R~~ 153 (160)
T PF11841_consen 114 SNQEIQTNAIALINALFLKA--DDSKRKEIAETLSQKQIRQV 153 (160)
T ss_pred CCHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHH
Confidence 78888888888888887332 22367788999888876443
No 41
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.98 E-value=6.9e+02 Score=32.30 Aligned_cols=130 Identities=16% Similarity=0.255 Sum_probs=71.3
Q ss_pred hHHHHHHHhHHH-HHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHH--hh-hccChHh----HHHHHHHHHh
Q 002882 287 NLNSIIHGNNAY-VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG--LS-KSLQMVQ----QLRLFRDLMN 358 (871)
Q Consensus 287 ~LnSlI~fNq~e-IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~--ls-K~LQ~~~----r~~lf~~Lv~ 358 (871)
.+.+-|+.-.+. |...|-+|..+|..||+.+.-+.. ...-+..|+.-+.. +. |..|.-. +..++..|+.
T Consensus 79 ~i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~p---ln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~ 155 (838)
T KOG2073|consen 79 NISCEILTSDVWPISEALVEDESLLSLLYSILEHEPP---LNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLK 155 (838)
T ss_pred cHHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCc---ccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHH
Confidence 455666666664 455688899999999999976521 11112222111111 11 1112211 4445545444
Q ss_pred c-CcHHHHHHHHcCC--CcchhhhhhHHHHHHHhcCh-HHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002882 359 E-GIFDIVTDALQSQ--DKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (871)
Q Consensus 359 ~-GLl~vi~~~L~~~--d~~ir~~atDIL~~iie~dP-~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (871)
| |+..++.+.|+.- |.. ..| ..|-+++..++ ++..|++++....++++++-..+.|+.+
T Consensus 156 hi~~stlMD~Llkli~~de~--------------~~p~~~Viq~l~d~~---li~kll~ll~ps~~~~~qsna~~~L~~i 218 (838)
T KOG2073|consen 156 HIDISTLMDFLLKLISTDEP--------------ESPRTDVIQWLNDQE---LIPKLLELLNPSKDPDVQSNAGQTLCAI 218 (838)
T ss_pred HcCccHHHHHHHHhccccCC--------------CCchHHHHHHHhhHH---HHHHHHHHhCCccccchhHHHHHHHHHH
Confidence 3 5555555555421 211 112 23334444433 7788888888888899888788888777
Q ss_pred cC
Q 002882 435 LD 436 (871)
Q Consensus 435 LD 436 (871)
.-
T Consensus 219 v~ 220 (838)
T KOG2073|consen 219 VR 220 (838)
T ss_pred Hh
Confidence 63
No 42
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.90 E-value=7.2e+02 Score=32.51 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=47.3
Q ss_pred HcCCCcchhhhhhHHHHHHHh---cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 002882 369 LQSQDKKLVLTGTDILILFLN---QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 438 (871)
Q Consensus 369 L~~~d~~ir~~atDIL~~iie---~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 438 (871)
++++---+|.-||+++..+-+ .||+.+++ .+....+.|.++.+.-++.+.+-||+.++-..
T Consensus 471 f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~---------ale~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 471 FQSPYGYLRARACWVLSQFSSIDFKDPNNLSE---------ALELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred hcCchhHHHHHHHHHHHHHHhccCCChHHHHH---------HHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 355666688999999987764 45666665 45567788888999999999999999998554
No 43
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.64 E-value=4e+02 Score=31.30 Aligned_cols=182 Identities=19% Similarity=0.239 Sum_probs=112.6
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 002882 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 433 (871)
Q Consensus 354 ~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 433 (871)
+.|+..|=++++-.+++..|..++--+|--+..| -.|-- -|. ++-|.+..|+..|+++| .+.++-+|.|..-||+.
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd~~-~Rk-~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVDRR-ARK-ILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhh-hhhHH-HHH-HHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 4578899999999999999988876555443332 22221 243 34455667888888876 55778899999999998
Q ss_pred hcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhh--h
Q 002882 434 LLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIK--C 511 (871)
Q Consensus 434 LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK--~ 511 (871)
|---... .+..--...++-|++-|.+.. -+-++ + =-||+|.-+.+-- -
T Consensus 278 lasdt~Y-------q~eiv~ag~lP~lv~Llqs~~------------------~plil----a-sVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 278 LASDTEY-------QREIVEAGSLPLLVELLQSPM------------------GPLIL----A-SVACIRNISIHPLNEV 327 (550)
T ss_pred hcccchh-------hhHHHhcCCchHHHHHHhCcc------------------hhHHH----H-HHHHHhhcccccCccc
Confidence 8422211 111222234566666553311 00011 1 1378876554432 2
Q ss_pred HHhhhhHHHHHHHhhhccchh-hHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002882 512 NFLLNNVVDKVLLLTRRREKY-LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (871)
Q Consensus 512 ~il~~nll~rVl~Ll~~~~K~-L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~ 570 (871)
.|.....++-.++|+++++.- .++.|+--+|.+-+.- +.-.+-|+..+-..-...+++
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHh
Confidence 344445667788999999865 8999999999987642 334456667777666665554
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=49.27 E-value=5.2e+02 Score=30.71 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=108.8
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcH-HHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHH
Q 002882 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIF-DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVV 400 (871)
Q Consensus 324 ~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv--~~GLl-~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~ 400 (871)
.+-.+-++.++-+++.- -+.|..+|..-. +...+ +.+. .|..+|.-+...+.-||..++.+.|...-..
T Consensus 68 ~d~vqyvL~Li~dll~~-----~~~~~~~f~~~~~~~~~~~~~fl~-lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~-- 139 (429)
T cd00256 68 DDTVRYVLTLIDDMLQE-----DDTRVKLFHDDALLKKKTWEPFFN-LLNRQDQFIVHMSFSILAKLACFGLAKMEGS-- 139 (429)
T ss_pred HHHHHHHHHHHHHHHHh-----chHHHHHHHHHhhccccchHHHHH-HHcCCchhHHHHHHHHHHHHHhcCccccchh--
Confidence 34445555566666554 245555554321 12333 3344 6778888899999999999998876421110
Q ss_pred hcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHHhcCCCcccccccCC
Q 002882 401 RQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASS 479 (871)
Q Consensus 401 ~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~-~~~~L~~pL~~~~p~e~~~~~~~~ 479 (871)
....+++.|+.++-...+.+.+......|..||-.. .|=..|.+. ++..|+.-|-..
T Consensus 140 --~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~--------~~R~~f~~~~~v~~L~~~L~~~------------ 197 (429)
T cd00256 140 --DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD--------EYRFAFVLADGVPTLVKLLSNA------------ 197 (429)
T ss_pred --HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc--------hHHHHHHHccCHHHHHHHHhhc------------
Confidence 111245566766655444555545556777776332 233445543 455554433211
Q ss_pred CCcccCCcHHHHH---HHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhh--ccchhhHHHHHHHHHHHhcCc-----h
Q 002882 480 GGRVESTKPEILS---NICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTR--RREKYLVVAAVRFVRTILSRH-----D 549 (871)
Q Consensus 480 ~~~~~~~~~~ll~---~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~--~~~K~L~LaAlRF~R~iI~l~-----D 549 (871)
....+++. ..+=+|||.-. .-......+++..++.+++ .|+|..+++ +-.+|+++... -
T Consensus 198 -----~~~~Ql~Y~~ll~lWlLSF~~~-----~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~-l~~l~Nll~~~~~~~~~ 266 (429)
T cd00256 198 -----TLGFQLQYQSIFCIWLLTFNPH-----AAEVLKRLSLIQDLSDILKESTKEKVIRIV-LAIFRNLISKRVDREVK 266 (429)
T ss_pred -----cccHHHHHHHHHHHHHHhccHH-----HHHhhccccHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhhcccccchh
Confidence 01223332 23334555433 1122334567888777764 688999974 77899999864 2
Q ss_pred hHHHHHHHhcCChH
Q 002882 550 EHLINHFVKNNLLK 563 (871)
Q Consensus 550 efy~ryiIk~nLf~ 563 (871)
..+.--|+..++..
T Consensus 267 ~~~~~~mv~~~l~~ 280 (429)
T cd00256 267 KTAALQMVQCKVLK 280 (429)
T ss_pred hhHHHHHHHcChHH
Confidence 33445556555543
No 45
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=48.48 E-value=4.1e+02 Score=29.21 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=56.0
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002882 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (871)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir 591 (871)
.+...+.|+.....-.+.-|||.+=.+= .+.-..++|+..+.+..++.+|..+.++.||++ +|-||+-|.
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS--~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~--~l~~~~ni~ 204 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLS--ENPDMTRELLSAQVLSSFLSLFNSSESKENLLR--VLTFFENIN 204 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhc--cCHHHHHHHHhccchhHHHHHHccCCccHHHHH--HHHHHHHHH
Confidence 4556778888888888888888765432 445568999999999999999999999999985 678888774
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.89 E-value=2e+02 Score=36.88 Aligned_cols=247 Identities=15% Similarity=0.161 Sum_probs=134.9
Q ss_pred HHHHHHhhCCHHHHHHHHH--------Hh---CCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 002882 297 AYVVSLLKDDSTFIQELFA--------RL---RSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 365 (871)
Q Consensus 297 ~eIV~~Lq~d~~FL~eLF~--------~l---~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi 365 (871)
.-|+.-.|..+.-|.+|+. +| .++..+....--+|++|.-||.=+ .-+|++|.+.+|-.++
T Consensus 360 ~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~--------pl~~~tl~k~~I~~~L 431 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGS--------PLLFRTLLKLDIADTL 431 (1051)
T ss_pred HHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCC--------hHHHHHHHHhhHHHHH
Confidence 3466666777777777764 11 122233445556777777766532 3479999999999999
Q ss_pred HHHHcCCCcchhhhhhHH-----------HHHHHhc------------ChHHHHHHHHhc--------CC----cchHHH
Q 002882 366 TDALQSQDKKLVLTGTDI-----------LILFLNQ------------DPNLLRSYVVRQ--------EG----IPLLGL 410 (871)
Q Consensus 366 ~~~L~~~d~~ir~~atDI-----------L~~iie~------------dP~lvR~~i~~q--------e~----~~Ll~~ 410 (871)
++.|..-.+.--..-++. +..+++. |-.+++..+--+ +| ++-.++
T Consensus 432 ~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~ 511 (1051)
T KOG0168|consen 432 KRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNI 511 (1051)
T ss_pred HHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchh
Confidence 999986654322211111 1112221 111122111111 11 011122
Q ss_pred HHHHHh-ccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHH
Q 002882 411 LVKGMI-TDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPE 489 (871)
Q Consensus 411 Li~~ll-~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ 489 (871)
+.+++- ...|+|-.--.-+.++ .++..--..++-+.++-|-+..++.|+....+.. ++.|++ -
T Consensus 512 ~~ri~~q~~~~~~t~~~~~dkl~--~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA-----------~~~VR~---k 575 (1051)
T KOG0168|consen 512 DSRIIEQINEDTGTSRKQQDKLN--GSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSA-----------NPDVRY---K 575 (1051)
T ss_pred hhhhhhhhccCcccchhhhhhcC--CchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccC-----------CchhhH---H
Confidence 222211 0112222111111111 1111100012336778888888899988775531 122322 3
Q ss_pred HHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHH
Q 002882 490 ILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (871)
Q Consensus 490 ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f 569 (871)
-|.-|..|.+|-- +--|+--+-++++...++-++.+++-.+.++||...--+...==|.|-.|+++.++|.-|=.+.
T Consensus 576 cL~Ailrlvy~s~---seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~ 652 (1051)
T KOG0168|consen 576 CLSAILRLVYFSN---SELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLS 652 (1051)
T ss_pred HHHHHHHHHhhCC---HHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHh
Confidence 4567777777755 2335555566677788888899999999999998877766554555677888999888876665
Q ss_pred H
Q 002882 570 V 570 (871)
Q Consensus 570 ~ 570 (871)
.
T Consensus 653 ~ 653 (1051)
T KOG0168|consen 653 V 653 (1051)
T ss_pred c
Confidence 5
No 47
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=47.69 E-value=52 Score=33.50 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCC----CCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHH
Q 002882 426 QFLEILRSLLDSYT----LSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC 501 (871)
Q Consensus 426 Ql~eaLk~LLDp~~----m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fc 501 (871)
.++++|-.+|+.+. -..+++|+|++.|.+-|...|=.|-. .....+-..++++||.|
T Consensus 100 ~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~-------------------~K~~~ik~~if~il~~~ 160 (171)
T PF12922_consen 100 RILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEI-------------------VKNKSIKDAIFRILGTA 160 (171)
T ss_pred HHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHh-------------------hccHHHHHHHHHHHHHH
Confidence 34445555554322 12348999999888777543311110 11335668999999999
Q ss_pred Hhhccch
Q 002882 502 VLHHPYR 508 (871)
Q Consensus 502 v~~H~yr 508 (871)
|.+|.+-
T Consensus 161 vk~h~h~ 167 (171)
T PF12922_consen 161 VKKHNHA 167 (171)
T ss_pred HHHcccc
Confidence 9999874
No 48
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=46.96 E-value=2.8e+02 Score=32.27 Aligned_cols=62 Identities=19% Similarity=0.395 Sum_probs=46.7
Q ss_pred HHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHH
Q 002882 333 FLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYV 399 (871)
Q Consensus 333 FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i 399 (871)
+|.-+..+.++... .-+...+- .|++++-.+|..+|..++.++.++|..+++..|..+-.|+
T Consensus 343 yL~ALs~ll~~vP~---~vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 343 YLTALSHLLKNVPK---SVLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred HHHHHHHHHhhCCH---HHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 45556666666652 22222222 2889999999999999999999999999999999988765
No 49
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=46.71 E-value=47 Score=37.96 Aligned_cols=91 Identities=12% Similarity=0.262 Sum_probs=66.8
Q ss_pred hHHhhhhHHHHHHHhhh-ccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHH-HHHhCCC--CcchHHHHHHH
Q 002882 511 CNFLLNNVVDKVLLLTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDA-FVANGNR--YNLLNSAVLEL 586 (871)
Q Consensus 511 ~~il~~nll~rVl~Ll~-~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~-f~~ng~R--~NLLnSA~LEL 586 (871)
.|+++++++.++..+-. ....-++..++||+.++|+.-++= .+...++..||+++ +..-|.. ..-......+|
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 48899999999999944 455788999999999999986664 55677999999999 7655543 56677777777
Q ss_pred HHHHHh--hChHHHHHHHHH
Q 002882 587 FEYIRK--ENLKSLVKYIVD 604 (871)
Q Consensus 587 fe~Ir~--eNik~Li~hlve 604 (871)
+..|.. ..-..|+.+..+
T Consensus 80 L~~lc~~i~~~P~ll~~ff~ 99 (353)
T PF10257_consen 80 LNTLCSKIRKDPSLLNFFFE 99 (353)
T ss_pred HHHHHHHHHhCHHHHHHHhc
Confidence 777653 223344444444
No 50
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=46.07 E-value=24 Score=25.77 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=25.2
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002882 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (871)
Q Consensus 361 Ll~vi~~~L~~~d~~ir~~atDIL~~iie~ 390 (871)
|++.+-..+++++..+|.+|+.-|..|.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 577888899999999999999999888765
No 51
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=45.12 E-value=59 Score=38.91 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=92.2
Q ss_pred HHHHHHHhhCC-------HHHHHHHHHHhCCCCCcHHhHHHHHHHH---HHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 002882 296 NAYVVSLLKDD-------STFIQELFARLRSPTTLEESKKNLVHFL---HEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 365 (871)
Q Consensus 296 q~eIV~~Lq~d-------~~FL~eLF~~l~~~~~~~e~rrd~v~FL---~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi 365 (871)
|.-|+++|..+ +..++=+|.-+.++++...-|.-++.|+ +..+.. . .+......+..+..|+.+.+
T Consensus 300 q~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~---~-~~~~l~~l~~~i~~~g~p~~ 375 (501)
T PF13001_consen 300 QEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKH---I-SPQILKLLRPVILSQGWPLI 375 (501)
T ss_pred HHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhh---c-CHHHHHHHHHHHHhcCcccc
Confidence 56777777654 2345555555666656566677888898 544333 2 23456677788888888887
Q ss_pred HH----HHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 366 TD----ALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 366 ~~----~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
.. .-...+...|..+-+.|-.+...+|.++.+ +..++..|-+.| .+..++++..+-|||-.|+
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~------d~~li~~LF~sL-~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK------DLSLIEFLFDSL-EDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccc------cHHHHHHHHHHh-hCcchHHHHHHHHHHHHHH
Confidence 31 123456678999999999999999998754 577888888888 7778899999999998885
No 52
>PF05536 Neurochondrin: Neurochondrin
Probab=44.91 E-value=6.6e+02 Score=30.64 Aligned_cols=205 Identities=16% Similarity=0.204 Sum_probs=117.3
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCC-------Ccchhhhh
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQ-------DKKLVLTG 380 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~-------d~~ir~~a 380 (871)
.-|.+....++... ++.|.-++.++.-+|. +.......|...|.++ | ++++.-.|+.. ....+..|
T Consensus 5 ~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~-~~~~~~~~~~~v~~ai---g-~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD--DTERFAGLLLVTKLLD-ADDEDSQTRRRVFEAI---G-FKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred HHHHHHHHHhccCC--cHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhc---C-hhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 34777788887765 6889999998888776 3333333344455333 4 57777777652 23467888
Q ss_pred hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHH
Q 002882 381 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQL 460 (871)
Q Consensus 381 tDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L 460 (871)
.-||.++.. +|.+.++.-+ ..-+-.|++.+....+.++..-..+.|..+.-. -.|+ .. +.....+..|
T Consensus 78 vsvL~~f~~-~~~~a~~~~~----~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~--~a---Ll~~g~v~~L 145 (543)
T PF05536_consen 78 VSVLAAFCR-DPELASSPQM----VSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGA--KA---LLESGAVPAL 145 (543)
T ss_pred HHHHHHHcC-ChhhhcCHHH----HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhH--HH---HHhcCCHHHH
Confidence 999988776 8876543211 123345667676666656666666676666511 1121 11 2223445666
Q ss_pred HHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHH
Q 002882 461 IDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRF 540 (871)
Q Consensus 461 ~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF 540 (871)
+.-+... ...-+...+++..|+--...+... ++.-.-..++.++.......++-.+..+++|
T Consensus 146 ~ei~~~~-----------------~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~ 207 (543)
T PF05536_consen 146 CEIIPNQ-----------------SFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEF 207 (543)
T ss_pred HHHHHhC-----------------cchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 5554331 011123334444444444433322 3334444566777777777777777777777
Q ss_pred HHHHhcCch
Q 002882 541 VRTILSRHD 549 (871)
Q Consensus 541 ~R~iI~l~D 549 (871)
+-.++...+
T Consensus 208 L~~~L~~~~ 216 (543)
T PF05536_consen 208 LSAFLPRSP 216 (543)
T ss_pred HHHhcCcCC
Confidence 777776663
No 53
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.32 E-value=8e+02 Score=31.49 Aligned_cols=260 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HhHHHHHHHhh-------CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHH
Q 002882 294 GNNAYVVSLLK-------DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVT 366 (871)
Q Consensus 294 fNq~eIV~~Lq-------~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~ 366 (871)
|-|+.|+..|. +-.+.+.++.++.-.... ..|.-+-..|-||+..--.+.+.+...-. -.++|.
T Consensus 249 FLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntd--sskN~GnAILYE~V~TI~~I~~~~~Lrvl-------ainiLg 319 (866)
T KOG1062|consen 249 FLQIRILRLLRILGQNDADASDLMNDILAQVATNTD--SSKNAGNAILYECVRTIMDIRSNSGLRVL-------AINILG 319 (866)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccc--ccccchhHHHHHHHHHHHhccCCchHHHH-------HHHHHH
Q ss_pred HHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhh
Q 002882 367 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRD 446 (871)
Q Consensus 367 ~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d 446 (871)
..|.+.|..+|=.|.+.|...|.+||+.+.++-.. |=.=+.|.|..++.-.+|.+-.|++..|.
T Consensus 320 kFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~t----------IleCL~DpD~SIkrralELs~~lvn~~Nv------ 383 (866)
T KOG1062|consen 320 KFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRST----------ILECLKDPDVSIKRRALELSYALVNESNV------ 383 (866)
T ss_pred HHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHH----------HHHHhcCCcHHHHHHHHHHHHHHhccccH------
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhH---------Hhhhh
Q 002882 447 TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN---------FLLNN 517 (871)
Q Consensus 447 ~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~---------il~~n 517 (871)
...+..|+.-|-.. .++. ++++-+.||++.-=+...-..+|--+ +++.+
T Consensus 384 -------~~mv~eLl~fL~~~-d~~~--------------k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d 441 (866)
T KOG1062|consen 384 -------RVMVKELLEFLESS-DEDF--------------KADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD 441 (866)
T ss_pred -------HHHHHHHHHHHHhc-cHHH--------------HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchh
Q ss_pred HHHHHHHhhhcc-chhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhChH
Q 002882 518 VVDKVLLLTRRR-EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLK 596 (871)
Q Consensus 518 ll~rVl~Ll~~~-~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~eNik 596 (871)
++...++|+... .--=.=+.+|+.+++... |..+|=+..|+--.+|++-+-|+- |++-+|-+-+.-+-.+.+-
T Consensus 442 v~~nll~LIa~~~~e~~~y~~~rLy~a~~~~----~~~~is~e~l~qVa~W~IGEYGdl--ll~~~~~~~p~~vtesdiv 515 (866)
T KOG1062|consen 442 VVNNLLRLIANAFQELHEYAVLRLYLALSED----TLLDISQEPLLQVASWCIGEYGDL--LLDGANEEEPIKVTESDIV 515 (866)
T ss_pred hHHHHHHHHhcCCcchhhHHHHHHHHHHhhh----hhhhhhhhhHHHHHHHHhhhhhHH--hhcCccccCCCcCCHHHHH
Q ss_pred HHHHHHHHHh
Q 002882 597 SLVKYIVDSF 606 (871)
Q Consensus 597 ~Li~hlve~y 606 (871)
..+.-+.++|
T Consensus 516 d~l~~v~~~~ 525 (866)
T KOG1062|consen 516 DKLEKVLMSH 525 (866)
T ss_pred HHHHHHHHhc
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=42.57 E-value=98 Score=29.01 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=45.0
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002882 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (871)
Q Consensus 361 Ll~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (871)
|++.+=..+.++|..+|-.|++-|..+..+-...+-.+. .-+++.|++ ++.|.++.++.- ++.|-.|
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-----~~IF~~L~k-l~~D~d~~Vr~~-a~~Ld~l 94 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-----NEIFDALCK-LSADPDENVRSA-AELLDRL 94 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-HHcCCchhHHHH-HHHHHHH
Confidence 345555777899999999999999998876654433232 226667776 457888888743 3444433
No 55
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=40.59 E-value=1.2e+03 Score=32.50 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=46.4
Q ss_pred hHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 381 TDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 381 tDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
.-++..++++++. .|..+.+.....++.+|...+-+...+.||..++.+|..|+
T Consensus 585 L~Li~~V~~~s~~-ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 585 LRLISSVVRNSEQ-ARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHhcCHH-HHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3555678888865 78888888878889999999999999999999999999997
No 56
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=39.82 E-value=5.6e+02 Score=28.31 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=67.1
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH-HHhcChHHHHHHHHh
Q 002882 323 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL-FLNQDPNLLRSYVVR 401 (871)
Q Consensus 323 ~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~-iie~dP~lvR~~i~~ 401 (871)
+..-|..++.-|=-||-+.|.+-.+. +.++..++..++..++..|.-++.- ++.|.+..+......
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~a~~~-------------l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKELAKEH-------------LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHH-------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 44788999999998998887553221 1223333445677888888777764 445776665543221
Q ss_pred --c-CCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC
Q 002882 402 --Q-EGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (871)
Q Consensus 402 --q-e~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 439 (871)
. ....++.++.+.+-.+ ++.++..+.|.+-.||=...
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred CccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCC
Confidence 1 1246777877777666 88899999998887764433
No 57
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=39.80 E-value=2.9e+02 Score=27.75 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=74.1
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcC
Q 002882 312 ELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD 391 (871)
Q Consensus 312 eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~d 391 (871)
++..+..++....+.+ ..+-++|.+.++-....|.. +.+|..-|++.++.+...|..+|-+|+..-
T Consensus 3 ~~iekATse~l~~~dw----~~il~icD~I~~~~~~~k~a----------~ral~KRl~~~n~~v~l~AL~LLe~~vkNC 68 (144)
T cd03568 3 DLVEKATDEKLTSENW----GLILDVCDKVKSDENGAKDC----------LKAIMKRLNHKDPNVQLRALTLLDACAENC 68 (144)
T ss_pred HHHHHHcCccCCCcCH----HHHHHHHHHHhcCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 4455555555433332 34557777766544444543 467777788999999999999999999998
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 392 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 392 P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
...++..+.+ ..+++.|++++-...+..++.-+.+.|+.+=
T Consensus 69 G~~fh~evas---k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 69 GKRFHQEVAS---RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred CHHHHHHHhh---HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 8888776654 3477787776655577888888878777764
No 58
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=39.60 E-value=6e+02 Score=28.66 Aligned_cols=170 Identities=18% Similarity=0.233 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcCh-HHHHHHHHhcCCcchHHHHHHHHhccC---C-----
Q 002882 350 LRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDP-NLLRSYVVRQEGIPLLGLLVKGMITDF---G----- 420 (871)
Q Consensus 350 ~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP-~lvR~~i~~qe~~~Ll~~Li~~ll~d~---d----- 420 (871)
..+.+++++.- ++.|.-.|+.....+...+.-+|..|+.++. .+.|.. ++.=+.++ ..|.+++--.. .
T Consensus 47 ~~l~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v-~~~fd~~~-~~l~kll~~~~~~~~~~~~~ 123 (330)
T PF11707_consen 47 LELIRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREV-LRSFDFSL-KSLPKLLTPRKKEKEKDSES 123 (330)
T ss_pred HHHHHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHH-HHhcCCch-hhHHHHhccccccccccccc
Confidence 45778877665 8999999999988888888899999999554 656653 33211111 11222221110 0
Q ss_pred ----hhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHH
Q 002882 421 ----EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICE 496 (871)
Q Consensus 421 ----~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~E 496 (871)
+.++..+..-+-.+|...+- .-+..+|+. ..++..++... ..=.+++...+++
T Consensus 124 ~~~~~siR~~fI~F~Lsfl~~~~~--~~~~~lL~~------~~~~~~l~k~l---------------~~D~~~~v~~iL~ 180 (330)
T PF11707_consen 124 SKSKPSIRTNFIRFWLSFLSSGDP--ELKRDLLSQ------KKLMSALFKGL---------------RKDPPETVILILE 180 (330)
T ss_pred cccCcCHHHHHHHHHHHHHccCCH--HHHHHHHHc------CchHHHHHhcc---------------cCCCHHHHHHHHH
Confidence 13333333333333322110 011112211 11122222210 1113467778888
Q ss_pred HHHHHHhhcc---chhhhHHhhhhHHHHHHHhhhccch----hhHHHHHHHHHHHh
Q 002882 497 LLCFCVLHHP---YRIKCNFLLNNVVDKVLLLTRRREK----YLVVAAVRFVRTIL 545 (871)
Q Consensus 497 LL~Fcv~~H~---yriK~~il~~nll~rVl~Ll~~~~K----~L~LaAlRF~R~iI 545 (871)
.|.=.|-+.+ ...|..+++...+.+++.|....+. -++=.|-+||..+-
T Consensus 181 ~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 181 TLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred HHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHh
Confidence 8886666555 4668999999999999998877666 67777777777643
No 59
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=39.14 E-value=17 Score=37.69 Aligned_cols=53 Identities=19% Similarity=0.469 Sum_probs=37.6
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCC
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISP 67 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~ 67 (871)
-|.|+|.... -..|.+||||-|.+.....+..+.|+++-..-....-.+=|.|
T Consensus 95 ~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklcaNH~i~P 148 (211)
T COG5171 95 ARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINP 148 (211)
T ss_pred hhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhhhhccCc
Confidence 5899999964 5689999999999876666677888887665443333333433
No 60
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.89 E-value=3.9e+02 Score=26.26 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=72.7
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
+.++..+..++....+.+ - .+-++|.+.+.-....+.. ..+|..-|++.++.+...|..+|=+|+.
T Consensus 6 ~~~li~kATs~~~~~~Dw---~-~~l~icD~i~~~~~~~kea----------~~~l~krl~~~~~~vq~~aL~lld~lvk 71 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDW---S-LILEICDLINSSPDGAKEA----------ARALRKRLKHGNPNVQLLALTLLDALVK 71 (140)
T ss_dssp HHHHHHHHT-TTSSS--H---H-HHHHHHHHHHTSTTHHHHH----------HHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCH---H-HHHHHHHHHHcCCccHHHH----------HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 455666666665544422 2 2235777766554444543 4677888899999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChh---HHHHHHHHHHHhc
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED---MHCQFLEILRSLL 435 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~g---lk~Ql~eaLk~LL 435 (871)
+....++..+.++ .+++.|.+++-...... ++..+.+.|..+=
T Consensus 72 Ncg~~f~~ev~~~---~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 72 NCGPRFHREVASK---EFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HSHHHHHHHHTSH---HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhHH---HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 9877777655543 48888887776544443 7888877776663
No 61
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=38.26 E-value=1.5e+02 Score=36.73 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHH
Q 002882 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIV 566 (871)
Q Consensus 487 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl 566 (871)
+..+++-||-| |-+-+- .|.+|+.+|.+.++..++..++--++-.+++++|..+-..|+-..... -..+++-.+
T Consensus 436 ~~~~lgai~Nl----Vmefs~-~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~-~~ki~a~~i 509 (678)
T KOG1293|consen 436 MGITLGAICNL----VMEFSN-LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL-LAKIPANLI 509 (678)
T ss_pred HHHHHHHHHHH----Hhhccc-HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH-HHHhhHHHH
Confidence 33455555544 333222 377999999999999999999888889999999999877776443322 233444445
Q ss_pred HHHHHhCCCCcchHHHHHHHHHHHHh--hChHHHHHHHHHHhHhhcccc
Q 002882 567 DAFVANGNRYNLLNSAVLELFEYIRK--ENLKSLVKYIVDSFWNQLVNF 613 (871)
Q Consensus 567 ~~f~~ng~R~NLLnSA~LELfe~Ir~--eNik~Li~hlve~y~~~l~~i 613 (871)
..|..+.+- -+--.| |.-.|. -|-...+.||++.|.+.+.++
T Consensus 510 ~~l~nd~d~--~Vqeq~---fqllRNl~c~~~~svdfll~~~~~~ld~i 553 (678)
T KOG1293|consen 510 LDLINDPDW--AVQEQC---FQLLRNLTCNSRKSVDFLLEKFKDVLDKI 553 (678)
T ss_pred HHHHhCCCH--HHHHHH---HHHHHHhhcCcHHHHHHHHHhhhHHHHHH
Confidence 555444332 222233 333443 356788999999999987653
No 62
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=38.09 E-value=5.8e+02 Score=28.04 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHHHhcCC-CCCCc--------hhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHH
Q 002882 420 GEDMHCQFLEILRSLLDS-YTLSG--------AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEI 490 (871)
Q Consensus 420 d~glk~Ql~eaLk~LLDp-~~m~~--------~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~l 490 (871)
|.++-.-+.-.+|-||.- +.+.. .-++.++..|++..+..|+--+... +. +.+-
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~-~~----------------~~~f 195 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASS-PQ----------------ESDF 195 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhC-cc----------------ccch
Confidence 445555566678888853 33221 1467899999998887777666552 10 0011
Q ss_pred HHHHHHHHHHHHhhccc
Q 002882 491 LSNICELLCFCVLHHPY 507 (871)
Q Consensus 491 l~~l~ELL~Fcv~~H~y 507 (871)
..+++|++++..+.+.-
T Consensus 196 ~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 196 NLLLLEIIYLLFKGQDP 212 (266)
T ss_pred hhHHHHHHHHHHcCCCH
Confidence 13899999999988854
No 63
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.15 E-value=2.3e+02 Score=34.12 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhhccC-hHhHHHHHHHHHhcCcHHHHHHH---Hc-CCC--cchhhhhhHHHHHHHhcChHHHHHHH
Q 002882 327 KKNLVHFLHEFCGLSKSLQ-MVQQLRLFRDLMNEGIFDIVTDA---LQ-SQD--KKLVLTGTDILILFLNQDPNLLRSYV 399 (871)
Q Consensus 327 rrd~v~FL~E~c~lsK~LQ-~~~r~~lf~~Lv~~GLl~vi~~~---L~-~~d--~~ir~~atDIL~~iie~dP~lvR~~i 399 (871)
..+++.+|++.+.-++.-+ ...+..+.++|-+.|.-.++... +. ... ..+|.+|+--|--+..++|..+|..+
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 3567777777666654322 23345677889888876655433 33 222 35889999888888999999999876
Q ss_pred Hh
Q 002882 400 VR 401 (871)
Q Consensus 400 ~~ 401 (871)
+.
T Consensus 520 ~~ 521 (574)
T smart00638 520 LP 521 (574)
T ss_pred HH
Confidence 64
No 64
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.74 E-value=52 Score=38.48 Aligned_cols=94 Identities=19% Similarity=0.333 Sum_probs=71.4
Q ss_pred CeeEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcce-eEeecCCCCcccccc--CeEEEecCCCcc---c
Q 002882 15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETI-LLHRISPDDIYRKQE--DTIISWRDPEYS---T 88 (871)
Q Consensus 15 rRVKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~L-L~s~I~~~d~YqkQq--eTLIvWte~~~g---~ 88 (871)
+|+||+-..+ .+..|+|+|-.....+.+ +...|+||..-+-..| |..=+.++-.-+||. .-+||-.-+... .
T Consensus 386 KkckvfykKd-KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcvp~~e~t~p~ 463 (487)
T KOG2724|consen 386 KKCKVFYKKD-KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCVPPSESTEPA 463 (487)
T ss_pred cccceEEEec-ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEeCCcccccce
Confidence 7889988875 689999999888776666 6788999988765444 445566777777777 458887765423 4
Q ss_pred cccccccCccchhHHHHHHHHH
Q 002882 89 ELALSFQEPTGCSYIWDNICNV 110 (871)
Q Consensus 89 DlALSFQe~~GC~~IW~~I~~V 110 (871)
-|-|.|-..+|.+++-+.|.++
T Consensus 464 TmLIRvktad~aD~L~~kI~E~ 485 (487)
T KOG2724|consen 464 TMLIRVKTADGADKLTDKILEV 485 (487)
T ss_pred eEEEEecccchHHHHHHHHHhh
Confidence 5778899999999999998876
No 65
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.71 E-value=1.9e+02 Score=31.78 Aligned_cols=87 Identities=17% Similarity=0.262 Sum_probs=50.6
Q ss_pred hccchhhhHHhhhhHHHHHHHhhhc-----------cchhhHHHHHHHHHHHhcCch-----------hHHHHH----HH
Q 002882 504 HHPYRIKCNFLLNNVVDKVLLLTRR-----------REKYLVVAAVRFVRTILSRHD-----------EHLINH----FV 557 (871)
Q Consensus 504 ~H~yriK~~il~~nll~rVl~Ll~~-----------~~K~L~LaAlRF~R~iI~l~D-----------efy~ry----iI 557 (871)
+|-+..|.-|+..+++.-|+.++.. .+.-+.=-.|-|+|+++...| ...+.- +-
T Consensus 96 ~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~ 175 (266)
T PF04821_consen 96 KYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALF 175 (266)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHH
Confidence 4445568889888888777765421 123333356889999988833 222222 23
Q ss_pred hcCChHHHHHHHHHh-CCCCcchHHHHHHHHHHHHhh
Q 002882 558 KNNLLKPIVDAFVAN-GNRYNLLNSAVLELFEYIRKE 593 (871)
Q Consensus 558 k~nLf~PIl~~f~~n-g~R~NLLnSA~LELfe~Ir~e 593 (871)
+.++++-++.+.-.- +.. .+..+||+|.+|-++
T Consensus 176 ~~~v~~lLL~l~s~~~~~~---f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 176 ESGVLDLLLTLASSPQESD---FNLLLLEIIYLLFKG 209 (266)
T ss_pred HcCHHHHHHHHHhCccccc---hhhHHHHHHHHHHcC
Confidence 566666666544332 222 333777777777553
No 66
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.55 E-value=9.7e+02 Score=29.27 Aligned_cols=170 Identities=17% Similarity=0.229 Sum_probs=88.8
Q ss_pred HHHH-hhCCHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHHHHHhhhccChHhHHHHHH------------HHHhcCcH
Q 002882 299 VVSL-LKDDSTFIQELFARLRSPTT---LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFR------------DLMNEGIF 362 (871)
Q Consensus 299 IV~~-Lq~d~~FL~eLF~~l~~~~~---~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~------------~Lv~~GLl 362 (871)
++.| |+.-+.+..||-..-++... ....|.+.-+..+++-.+++--..--|..+|- .+.++.|.
T Consensus 227 ~idhElkRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV 306 (791)
T KOG1222|consen 227 AIDHELKRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIV 306 (791)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHH
Confidence 4444 44444445555544333221 12345566666666655544333333444332 23455677
Q ss_pred HHHHHHHcCCCcchhhhhhHHH--HHHHhcCh-HHHHHHHHhc-------CCcchHHHHHHHHhc-cCChhHHHHHHH--
Q 002882 363 DIVTDALQSQDKKLVLTGTDIL--ILFLNQDP-NLLRSYVVRQ-------EGIPLLGLLVKGMIT-DFGEDMHCQFLE-- 429 (871)
Q Consensus 363 ~vi~~~L~~~d~~ir~~atDIL--~~iie~dP-~lvR~~i~~q-------e~~~Ll~~Li~~ll~-d~d~glk~Ql~e-- 429 (871)
.++-.+|..++..+-.+.+-.| .+|.+-+- .|...-++.. ...-|....+.++.+ .+|.|++--+..
T Consensus 307 ~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~G 386 (791)
T KOG1222|consen 307 AMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGG 386 (791)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhcc
Confidence 7777777766654433333222 12222221 2222222221 233466676777776 788888655544
Q ss_pred ---HHHHhcCCCCCCc-h--------hhhHHHH-HHHHhhHHHHHHHHHhcC
Q 002882 430 ---ILRSLLDSYTLSG-A--------QRDTIIE-IFYEKHLGQLIDVITASC 468 (871)
Q Consensus 430 ---aLk~LLDp~~m~~-~--------e~d~fL~-~FY~~~~~~L~~pL~~~~ 468 (871)
-|-.|||.++--+ + -.|.|=. |=|..|++.|.+-++..+
T Consensus 387 llP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~ 438 (791)
T KOG1222|consen 387 LLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGT 438 (791)
T ss_pred chHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788999887422 1 1233433 448899999999998753
No 67
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.10 E-value=2.3e+02 Score=35.73 Aligned_cols=249 Identities=19% Similarity=0.219 Sum_probs=139.8
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC-C
Q 002882 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-L 440 (871)
Q Consensus 362 l~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~-m 440 (871)
+.-|..++++.++-+|.+++.....+-..+|.+++ +..|+..|-+++ .|.++++-+-...+|..+.+..+ +
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~-------~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE-------DSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc-------ccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCC
Confidence 44455666788888888888888888877877664 355777765544 58899987777778887776553 2
Q ss_pred Cch-hhhHHHHHHHH---hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchh-----hh
Q 002882 441 SGA-QRDTIIEIFYE---KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-----KC 511 (871)
Q Consensus 441 ~~~-e~d~fL~~FY~---~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri-----K~ 511 (871)
... .--.+++.+-. .|-.|---++++... ... +. +..=...||+.++=..+|-.-+. |-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~-----~y~-p~------d~~ea~~i~~r~~p~Lqh~n~avvlsavKv 262 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLA-----EYV-PK------DSREAEDICERLTPRLQHANSAVVLSAVKV 262 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHH-----hcC-CC------CchhHHHHHHHhhhhhccCCcceEeehHHH
Confidence 111 11112222221 233333223322100 000 00 00001234554443333322211 11
Q ss_pred HH--------hhhhHHHHHHH-h--hhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCCh---HHH------HHHHHH
Q 002882 512 NF--------LLNNVVDKVLL-L--TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLL---KPI------VDAFVA 571 (871)
Q Consensus 512 ~i--------l~~nll~rVl~-L--l~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf---~PI------l~~f~~ 571 (871)
+. ..+.+..|+.- | +-+...-+...|||=++-++...++ +.++=++.=.+ +|| ++++.+
T Consensus 263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPiYvK~eKleil~~ 341 (734)
T KOG1061|consen 263 ILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPIYVKLEKLEILIE 341 (734)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCchhhHHHHHHHHHH
Confidence 11 22334455532 2 4567777788999999999999999 77877777544 465 466666
Q ss_pred hCCCCcchHHHHHHHHHHHHhh-------ChHHHH---------HHHHHHhHhhcc-cccch-----hhHHHHHHHHhhh
Q 002882 572 NGNRYNLLNSAVLELFEYIRKE-------NLKSLV---------KYIVDSFWNQLV-NFEYL-----ASLHSFKVKYEQC 629 (871)
Q Consensus 572 ng~R~NLLnSA~LELfe~Ir~e-------Nik~Li---------~hlve~y~~~l~-~i~yv-----~tf~~L~~ryeq~ 629 (871)
-.+..|+-. ..-||-+|---- -|+.+= +.+|..+=+.++ +++|| .+|+.+-.+|.|.
T Consensus 342 la~~~nl~q-vl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 342 LANDANLAQ-VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HhhHhHHHH-HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 666667766 666777765321 121110 335555555555 56676 3788888899887
Q ss_pred ccc
Q 002882 630 LES 632 (871)
Q Consensus 630 ~e~ 632 (871)
.+.
T Consensus 421 ~~~ 423 (734)
T KOG1061|consen 421 YES 423 (734)
T ss_pred hhh
Confidence 543
No 68
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=31.16 E-value=6.7e+02 Score=27.60 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchh
Q 002882 365 VTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 444 (871)
Q Consensus 365 i~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e 444 (871)
+...|.++|..+|..|+..|..+++.=|.-. +-+++-..|++..++.| +...++..- ..+|..|+.-.......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl--~D~~~~~~~-l~gl~~L~~~~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRL--DDHACVQPA-LKGLLALVKMKNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHh--ccHhhHHHH-HHHHHHHHhCcCCChhh
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHH
Q 002882 445 RDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLL 524 (871)
Q Consensus 445 ~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~ 524 (871)
-..+++.+++++ .++......=..+.+||-+.+.+|.--+ .=+..+.+..+++
T Consensus 78 ~~~i~~~l~~~~-------------------------~~q~~~q~~R~~~~~ll~~l~~~~~~~l--~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 78 AVKILRSLFQNV-------------------------DVQSLPQSTRYAVYQLLDSLLENHREAL--QSMGDDFVYGFIQ 130 (262)
T ss_pred HHHHHHHHHHhC-------------------------ChhhhhHHHHHHHHHHHHHHHHHhHHHH--HhchhHHHHHHHH
Q ss_pred hhh-ccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHH
Q 002882 525 LTR-RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (871)
Q Consensus 525 Ll~-~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f 569 (871)
++. -|+.=--+.+.+.++.++..=| + .+..+-+++++
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~-------~-~~~~e~lFd~~ 168 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFD-------I-SEFAEDLFDVF 168 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcc-------c-chhHHHHHHHh
No 69
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=30.46 E-value=1.2e+02 Score=33.74 Aligned_cols=50 Identities=12% Similarity=0.442 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHhhhhcchhHhHHhhhcccCCC
Q 002882 170 FFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPD 230 (871)
Q Consensus 170 YI~kLl~LF~~cEdle~~~~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VvG~LEYDPe 230 (871)
...+|-.|.+.|.+-..-+....+-.+||.++.. ++-. -.++.|||+||+
T Consensus 192 lsEnLekLl~ea~erS~~~~~~~~~~lvrklL~I---------isRP--ARLLEcLEFdPe 241 (282)
T PF08926_consen 192 LSENLEKLLQEAHERSESEEVAFVTQLVRKLLII---------ISRP--ARLLECLEFDPE 241 (282)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH---------HSS---------------
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH---------hcch--hhhhhhhccChH
Confidence 3456777888888877788899999999988732 1111 156779999998
No 70
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=30.30 E-value=5.6e+02 Score=25.55 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=71.0
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
+.++..+..++....+. ...+-|+|.+..+-+...|.+ +.+|+.-|++.++.+...|..+|-+|+.
T Consensus 5 ~~~~I~kATs~~l~~~d----w~~ileicD~In~~~~~~k~a----------~ral~krl~~~n~~vql~AL~LLe~~vk 70 (142)
T cd03569 5 FDELIEKATSELLGEPD----LASILEICDMIRSKDVQPKYA----------MRALKKRLLSKNPNVQLYALLLLESCVK 70 (142)
T ss_pred HHHHHHHHcCcccCccC----HHHHHHHHHHHhCCCCCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 45566666665432221 334456777665433334433 4677777889999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
+--..++..+.. ..|++.|++++-...++.++..+.+.+..+=
T Consensus 71 NCG~~fh~evas---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 71 NCGTHFHDEVAS---REFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HCCHHHHHHHhh---HHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 865555554443 4578888876655667777777777776664
No 71
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=30.09 E-value=5.1e+02 Score=26.29 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=79.9
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 002882 363 DIVTDALQSQDKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 441 (871)
Q Consensus 363 ~vi~~~L~~~d~~ir~~atDIL~~iie~d-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 441 (871)
.-|...|++.+..-|-.|+-++..+++++ +..+.++ +..++..|+..+-....+.++.-...+|..|++--.
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-----~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~-- 100 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-----GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR-- 100 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 34667788999999999999999999997 6655222 345677777766665556666666666666664211
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhH
Q 002882 442 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN 512 (871)
Q Consensus 442 ~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~ 512 (871)
.+.++-.-+--..++.++.+++..... .......++.|.-|+.+|+--+|.|
T Consensus 101 --~~p~l~Rei~tp~l~~~i~~ll~l~~~-----------------~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 101 --GKPTLTREIATPNLPKFIQSLLQLLQD-----------------SSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred --CCCchHHHHhhccHHHHHHHHHHHHhc-----------------cccHHHHHHHHHHHHHHCCccccch
Confidence 111122222233467777777663210 2334577899999999999877764
No 72
>KOG4035 consensus Coeffector of mDia Rho GTPase, regulates actin polymerization and cell adhesion turnover [Signal transduction mechanisms; Cytoskeleton]
Probab=29.99 E-value=7e+02 Score=29.33 Aligned_cols=219 Identities=21% Similarity=0.243 Sum_probs=107.2
Q ss_pred cCCCCCC---ccchhHhhhhcCCceeeeecCChHHHHHHHhhheeee-e----e----ehhccc-ccchhhHHhHHHHHH
Q 002882 227 YDPDVPH---VQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGY-L----K----DVVLAR-VLDEATVANLNSIIH 293 (871)
Q Consensus 227 YDPe~p~---~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqY-L----K----DVVLpR-~LDD~t~s~LnSlI~ 293 (871)
-|+..|- .++.-+||.+.+.|.++= ....++..|-.|+|... | + ++|||- ...|----..|--++
T Consensus 125 ad~~i~~~~~s~~qfe~ls~lv~~~q~e--~r~sl~~~ilst~~al~~lD~~iid~ll~svL~~k~v~~~~td~~~~~~~ 202 (411)
T KOG4035|consen 125 ADGFIPLYVISANQFEWLSQLVAYYQME--QRDSLRELILSTFRALCSLDEPIIDILLDSVLPIKLVEDMQTDKSNGQQI 202 (411)
T ss_pred cCCcchhHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhcccchHHHHHHHhhccchhhhHHHhhhhccHHHH
Confidence 5666563 467778888888777763 24678888889998321 1 2 222220 001110000111111
Q ss_pred HhHHHHHHHhhCC-------------HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHh----HHHHHHHH
Q 002882 294 GNNAYVVSLLKDD-------------STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQ----QLRLFRDL 356 (871)
Q Consensus 294 fNq~eIV~~Lq~d-------------~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~----r~~lf~~L 356 (871)
.--..++-+++.+ ..|.+.||.+..+.. ....+-.|.++++.+..+. ...+++-+
T Consensus 203 ~~~~~~l~~l~s~~e~~p~~~md~lgs~~~~~l~~i~e~~~--------~~~L~el~~~f~~~~n~q~~~a~~nvi~~~l 274 (411)
T KOG4035|consen 203 KYLKILLLMLFSDDEAFPLEHMDSLGSEFARFLFNIAEDFH--------KEDLLELCTNFSLATNQQQGSAPLNVIQKIL 274 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcCCHHHHHHHHHcCccc--------HHHHHHHHHHHHHHHhhhcccccHHHHHHHh
Confidence 1111222233322 246667777665532 2334556666766542221 22344444
Q ss_pred HhcCcHHHHHH----HHc-CCCcchhhhhhHHHHHHHh--cChHHHHHHHHhcCCcchHHHHHHHHhc-cCChhHHHHHH
Q 002882 357 MNEGIFDIVTD----ALQ-SQDKKLVLTGTDILILFLN--QDPNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFL 428 (871)
Q Consensus 357 v~~GLl~vi~~----~L~-~~d~~ir~~atDIL~~iie--~dP~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~glk~Ql~ 428 (871)
.+.---++... -|+ .+|+ +|..-..||-.+++ -+|... ...+...=..|++++|+.+.. +.+.-+..-..
T Consensus 275 ~n~~~~kiFtE~Lll~LNR~~DP-lril~hkvl~lild~fg~pat~-~mFYtNDlkVLIDIliRel~ni~~gd~lr~~~l 352 (411)
T KOG4035|consen 275 ENPYSCKIFTEKLLLKLNREDDP-LRILKHKVLYLILDPFGEPATA-KMFYTNDLKVLIDILIRELINIDEGDKLRAIYL 352 (411)
T ss_pred cCCchHHHHHHHHHHHHccCCCh-HHHHHHHHHHHHHhhcCCcchH-hHhhhccHHHHHHHHHHHHhcCCcchhhHHHHH
Confidence 44322222221 223 3455 88888887766663 334422 223333334677888888766 33444555566
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHH
Q 002882 429 EILRSLLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVIT 465 (871)
Q Consensus 429 eaLk~LLDp~~m~~~e~d~fL~~FY~~~-~~~L~~pL~ 465 (871)
..++.|+-... ..+.+|.++ +.+++..+.
T Consensus 353 ~ll~~llknt~--------~~k~~hrk~dl~kil~~i~ 382 (411)
T KOG4035|consen 353 FLLKFLLKNTL--------YKKHRHRKHDLNKILNRIS 382 (411)
T ss_pred HHHHHHHhccc--------hhhhcCCchhHHHHHHHHh
Confidence 67777763322 344555443 555555554
No 73
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=29.23 E-value=87 Score=23.15 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=30.3
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
+..+...+.+..++.|+++.+.-++-.|+..+|++.
T Consensus 5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 456777788999999999888899999999998864
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.54 E-value=2e+02 Score=24.77 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=34.7
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 002882 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEIL 431 (871)
Q Consensus 361 Ll~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaL 431 (871)
.++.+..+++++++.+|..++.-|..+ .+...+..|++.+-.+.+..++....++|
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i---------------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRI---------------GDPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---------------HHHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh---------------CCHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 356666777888888887776665443 01224456666666667777776666554
No 75
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=28.38 E-value=1.9e+02 Score=28.39 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002882 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (871)
Q Consensus 487 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 546 (871)
++..+.-.|-=|..+|++|+. .|..+-.-+.=.+|+.||...+.=++=-||.++-.++.
T Consensus 57 d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455677788888999999976 57777666677899999999999999999999888764
No 76
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=28.11 E-value=1.8e+02 Score=30.04 Aligned_cols=93 Identities=17% Similarity=0.281 Sum_probs=52.8
Q ss_pred HhhhcccCCCCCCc-cchh-HhhhhcCCceeeee-cC--ChHHHHHHHhhheeeeeeehhcccccchhhHHhHHHHHHHh
Q 002882 221 IIGSLEYDPDVPHV-QHHR-NFLKEHVVFKEAIP-IR--DPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGN 295 (871)
Q Consensus 221 VvG~LEYDPe~p~~-~~HR-~fL~~~a~FKEVVP-I~--d~~i~~KIHqtYRLqYLKDVVLpR~LDD~t~s~LnSlI~fN 295 (871)
.-|||+.||.|-.. ..-| .++ ..+|+ +| ++ =..+..-+...+-+.|..|. .++.+|++++.-+.+.+...
T Consensus 3 a~GCL~CDp~v~eal~~L~~~~l--P~~~~--~~~~~~~~~rl~~~m~~~~~~~~~~~a-~~g~vd~~~L~~va~~~~~~ 77 (160)
T PF15005_consen 3 ARGCLQCDPSVVEALKSLRHDYL--PSHLH--VEGLQARAQRLLLEMEDFFFLPYAEDA-FMGVVDEDTLDKVAWSFKNQ 77 (160)
T ss_pred CCeeeeCCHHHHHHHHHHHHHhC--ccccC--cchHHHHHHHHHHHhhCccccccchhh-hhhhccHHHHHHHHHHHHHH
Confidence 45999999987753 1111 122 12222 11 11 02334445556667787775 67889999998888765544
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhC
Q 002882 296 NAYVVSLLKDDSTFIQELFARLR 318 (871)
Q Consensus 296 q~eIV~~Lq~d~~FL~eLF~~l~ 318 (871)
--.|-+.=-.+.-||+|||..+.
T Consensus 78 lkrl~~s~~kg~~ll~EL~~~r~ 100 (160)
T PF15005_consen 78 LKRLTDSDLKGEPLLKELVWMRQ 100 (160)
T ss_pred HHHHhcCCcccchHHHHHHHHHH
Confidence 44444432234567778877654
No 77
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.74 E-value=2.4e+02 Score=32.44 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=63.2
Q ss_pred HhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHH
Q 002882 286 ANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIV 365 (871)
Q Consensus 286 s~LnSlI~fNq~eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi 365 (871)
.+|.+ +.-||..+...+-+. .||+.|+.++.... +...|..+ |.-+|++-+|-++-.. .|+ .-.| +.++
T Consensus 146 ~Vigt-~~qNNP~~Qe~v~E~-~~L~~Ll~~ls~~~-~~~~r~ka---L~AissLIRn~~~g~~-~fl---~~~G-~~~L 214 (342)
T KOG2160|consen 146 RVIGT-AVQNNPKSQEQVIEL-GALSKLLKILSSDD-PNTVRTKA---LFAISSLIRNNKPGQD-EFL---KLNG-YQVL 214 (342)
T ss_pred HHHHH-HHhcCHHHHHHHHHc-ccHHHHHHHHccCC-CchHHHHH---HHHHHHHHhcCcHHHH-HHH---hcCC-HHHH
Confidence 34444 455666666666554 39999999998433 33444333 3567777777765433 232 3356 8999
Q ss_pred HHHHcC--CCcchhhhhhHHHHHHHhcChH
Q 002882 366 TDALQS--QDKKLVLTGTDILILFLNQDPN 393 (871)
Q Consensus 366 ~~~L~~--~d~~ir~~atDIL~~iie~dP~ 393 (871)
..+|++ .+...+..++-.+..++.-+++
T Consensus 215 ~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 215 RDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 999998 4556667778887777776665
No 78
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=27.03 E-value=8.5e+02 Score=27.46 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=41.5
Q ss_pred CcHHhHHHHHHHHHHHHHhh-h-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 322 TLEESKKNLVHFLHEFCGLS-K-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 322 ~~~e~rrd~v~FL~E~c~ls-K-~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
.-++-|.....||+.++..+ . -++.+ ...|+ -+++.|.|+++|++..|...|.++|..+++
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 34678888888888887654 1 11111 11222 246788999999999999999888876654
No 79
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=26.04 E-value=3.3e+02 Score=30.31 Aligned_cols=79 Identities=16% Similarity=0.393 Sum_probs=57.0
Q ss_pred HHHHHHHHHH--HHhhccchhhhHHhhhhHHHHHHHhhh-----ccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChH
Q 002882 491 LSNICELLCF--CVLHHPYRIKCNFLLNNVVDKVLLLTR-----RREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLK 563 (871)
Q Consensus 491 l~~l~ELL~F--cv~~H~yriK~~il~~nll~rVl~Ll~-----~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~ 563 (871)
-..+|-.|+- ||-.|+- .|..|++-+++-..--.++ ...-+|+|++|-.+.+++..+|.-...|+....++.
T Consensus 64 snRVcnaLaLlQ~vAshpe-tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiip 142 (262)
T PF04078_consen 64 SNRVCNALALLQCVASHPE-TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHHHH-TT-THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHHHHcChH-HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHH
Confidence 3455555543 6777876 4668888888755544332 224699999999999999999999999999999998
Q ss_pred HHHHHHH
Q 002882 564 PIVDAFV 570 (871)
Q Consensus 564 PIl~~f~ 570 (871)
.-+..+.
T Consensus 143 lcLr~me 149 (262)
T PF04078_consen 143 LCLRIME 149 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887763
No 80
>PF06334 Orthopox_A47: Orthopoxvirus A47 protein; InterPro: IPR009402 This family consists of several Orthopoxvirus A47 proteins. The function of this family is unknown.
Probab=25.94 E-value=46 Score=34.62 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=55.9
Q ss_pred HHHHHHhhcChh---hHHHH---HHHHhcchHHHHHHHHHHHHHHh--------------------cCChhhHHHHHHHH
Q 002882 144 LILKTVTESGIA---DQMRL---TELILNDQDFFRKLMDLFRICED--------------------LENIDGLHMIFKII 197 (871)
Q Consensus 144 eIl~~i~~~s~~---~r~rl---a~~Il~~~~YI~kLl~LF~~cEd--------------------le~~~~Lh~L~~Iv 197 (871)
+|.+++..++.. .|-++ .+-++.++=.++.|+.-.+..|- -.+.....-+-...
T Consensus 68 ~I~E~I~Ks~~~DiDKR~KL~~NIKs~~~NPF~i~GL~~SLE~~~~~~~~~YSSVMILGef~iin~~~~~a~FeFi~~LL 147 (244)
T PF06334_consen 68 EIFEIIQKSNSMDIDKRIKLMHNIKSMMINPFMIKGLMESLENFDPDNKMSYSSVMILGEFNIINISDNEATFEFINSLL 147 (244)
T ss_pred HHHHHHHhccccCHHHHHHHHHhhHHHhcCHHHHHHHHHHHhccCCCCCcceeeeEEeeccceEeccCchhHHHHHHHHH
Confidence 455666444322 34443 22344456566666655444322 22344556678889
Q ss_pred HHHHhcCCh--hhHhhhhcchhHhHHhhhcccC
Q 002882 198 KGIILLNSP--QIFEKIFGDELMMDIIGSLEYD 228 (871)
Q Consensus 198 K~IilLNd~--~IiE~llsDe~i~~VvG~LEYD 228 (871)
|++++||.. .|+|+..+.+....-+.||||=
T Consensus 148 KSL~lLNtrQ~KllEy~I~NDlLY~~I~~lEYI 180 (244)
T PF06334_consen 148 KSLLLLNTRQLKLLEYAINNDLLYEHINALEYI 180 (244)
T ss_pred HHHHhhcchhhhHHHHhhhhhHHHHHHHHHHHH
Confidence 999999975 6899999999999999999994
No 81
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=25.67 E-value=5.3e+02 Score=25.13 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHH
Q 002882 334 LHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVK 413 (871)
Q Consensus 334 L~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~ 413 (871)
+-++|.+..+-....|... .+|+.-|++.++.+...|..+|=+|+.+-...++..+...+ +++.|++
T Consensus 21 il~icd~I~~~~~~~k~a~----------raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~---fl~~l~~ 87 (133)
T cd03561 21 NLELCDLINLKPNGPKEAA----------RAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKE---FLLELVK 87 (133)
T ss_pred HHHHHHHHhCCCCCHHHHH----------HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHH---HHHHHHH
Q ss_pred HHhc--cCChhHHHHHHHHHHHh
Q 002882 414 GMIT--DFGEDMHCQFLEILRSL 434 (871)
Q Consensus 414 ~ll~--d~d~glk~Ql~eaLk~L 434 (871)
.+-. ..++-++..+.+.+..+
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHH
No 82
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.56 E-value=4e+02 Score=29.61 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHHHHhhccchhhhHHhhhh-----HHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCC
Q 002882 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNN-----VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNL 561 (871)
Q Consensus 487 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n-----ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nL 561 (871)
..++..+++=++.=++..++.|.+.|.-... ...-.++++...+.+.++.|.+++-.++.-.+..-.... ...
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~~~ 147 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV--KEA 147 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH--HHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH--HHH
Confidence 3456666677777778889988876655322 445666788899999999999999999988776544432 455
Q ss_pred hHHHHHHHHHhC--CCCcchHHHHHHHHHHHHh
Q 002882 562 LKPIVDAFVANG--NRYNLLNSAVLELFEYIRK 592 (871)
Q Consensus 562 f~PIl~~f~~ng--~R~NLLnSA~LELfe~Ir~ 592 (871)
+.++++.+.... +..|+...|+.-|-+..+.
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 677777775422 2233444444444444443
No 83
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.08 E-value=36 Score=36.34 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=36.6
Q ss_pred Cee-EEEEe-CCCCCceeccceEEEEEEeCCCcceeEEEEecCCC-cceeEeecCCCCcc
Q 002882 15 QRV-KVYRL-NDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDN-ETILLHRISPDDIY 71 (871)
Q Consensus 15 rRV-KVY~L-~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~-~~LL~s~I~~~d~Y 71 (871)
.|+ |+|.. ++..+|..+|||.|-...-.......++++.-.-+ ..+..+.|.+.--+
T Consensus 62 ~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~sn~~~~~~~~~ 121 (215)
T KOG0864|consen 62 QRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVCSNHFIGPSFKL 121 (215)
T ss_pred hhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhcccccccCcccc
Confidence 566 88888 44779999999999887655555556666655543 22333445554333
No 84
>PRK09687 putative lyase; Provisional
Probab=25.02 E-value=3e+02 Score=30.42 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcC---cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHH
Q 002882 349 QLRLFRDLMNEG---IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHC 425 (871)
Q Consensus 349 r~~lf~~Lv~~G---Ll~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~ 425 (871)
|...-..|...| .++.+...+.++|+.+|..|+.+|..+-+.+.. ...-+..|...++.|.++.++.
T Consensus 40 R~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----------~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 40 RISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----------QDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----------hHHHHHHHHHHHhcCCCHHHHH
Confidence 444444444444 667777778899999999999888876443211 0123345566667888888888
Q ss_pred HHHHHHHHhc
Q 002882 426 QFLEILRSLL 435 (871)
Q Consensus 426 Ql~eaLk~LL 435 (871)
+...+|--+-
T Consensus 110 ~A~~aLG~~~ 119 (280)
T PRK09687 110 SAINATGHRC 119 (280)
T ss_pred HHHHHHhccc
Confidence 8888776653
No 85
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=24.85 E-value=5.1e+02 Score=31.23 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHhhCC-----H----HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHH
Q 002882 298 YVVSLLKDD-----S----TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDA 368 (871)
Q Consensus 298 eIV~~Lq~d-----~----~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~ 368 (871)
+|..+++++ . +.|-.+|..+.+.. +.-.|+.+++.|+++|.- | .+-+.+=.+.-+-++|+-+
T Consensus 310 el~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~----Q----~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 310 ELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSE-DEIIKKLALRVLREMLTN----Q----PARLFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHh----c----hHhhhchHHHHHHHHHHHH
Confidence 577888876 2 23455667776533 446788899999999973 1 1222333455567777777
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChH
Q 002882 369 LQSQDKKLVLTGTDILILFLNQDPN 393 (871)
Q Consensus 369 L~~~d~~ir~~atDIL~~iie~dP~ 393 (871)
-...+..++.++-|-+..+-.|+|.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCch
Confidence 7788888999999999999999996
No 86
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.66 E-value=1.1e+03 Score=30.54 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=50.8
Q ss_pred hcCcHHHHHHHHcCCC-cchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 358 NEGIFDIVTDALQSQD-KKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 358 ~~GLl~vi~~~L~~~d-~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
-.-+.++|--.|+|+. ..|-..||=-|.+++|--|..+- +++... -+-+|+.-|++=.-..|..|..+||+.|=
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a-~vV~~~---aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA-IVVDEH---AIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh-eeeccc---chHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3446788888888764 56777888888899998887532 333321 23345555555556778999999999884
No 87
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=24.21 E-value=5.2e+02 Score=25.29 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhcc-ChHhHHHHHHHHHhcC
Q 002882 284 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL-QMVQQLRLFRDLMNEG 360 (871)
Q Consensus 284 t~s~LnSlI~fNq~eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~L-Q~~~r~~lf~~Lv~~G 360 (871)
++.+|.+++-.--..+-..+.+ ..|+.+|...+.++...+.-|..++.++++--.--++- +.+.-...|..|...|
T Consensus 57 AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~L~~~g 133 (133)
T smart00288 57 ALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVYDLLKKKG 133 (133)
T ss_pred HHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCc
No 88
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=24.02 E-value=3.4e+02 Score=25.52 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHH-HHHHHHh
Q 002882 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNL-LRSYVVR 401 (871)
Q Consensus 362 l~vi~~~L~~~d~~ir~~atDIL~~iie~dP~l-vR~~i~~ 401 (871)
+--|.-||.|=.+.||..++.+|-.++++.|.. ++++-.+
T Consensus 13 ~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~k 53 (102)
T PF12333_consen 13 MLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVK 53 (102)
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHH
Confidence 445778889999999999999999999999998 6665443
No 89
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.85 E-value=7.2e+02 Score=24.86 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=38.0
Q ss_pred HHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCCh--hHHHHHHH
Q 002882 352 LFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE--DMHCQFLE 429 (871)
Q Consensus 352 lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~--glk~Ql~e 429 (871)
.|..+++..+.+.+-..+.+++..+-..+.-|+..++.+ .|.++..| =..++..++..++..... --|.-++|
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~----~~~~Lk~e-le~~l~~i~~~il~~~~~~~~~k~~~Le 139 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR----FRSHLKLE-LEVFLSHIILRILESDNSSLWQKELALE 139 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 444555555555555555455555555566666665532 34433222 233455555544443221 23344455
Q ss_pred HHHHhc
Q 002882 430 ILRSLL 435 (871)
Q Consensus 430 aLk~LL 435 (871)
+++.+.
T Consensus 140 ~l~~l~ 145 (168)
T PF12783_consen 140 ILRELC 145 (168)
T ss_pred HHHHHH
Confidence 555554
No 90
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=23.17 E-value=34 Score=37.06 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=30.4
Q ss_pred HhcCChHHHHHHHHHhCC------CCcchHHHHHHHHHHHHhhCh----------HHHHHHHHHHhHhhccccc
Q 002882 557 VKNNLLKPIVDAFVANGN------RYNLLNSAVLELFEYIRKENL----------KSLVKYIVDSFWNQLVNFE 614 (871)
Q Consensus 557 Ik~nLf~PIl~~f~~ng~------R~NLLnSA~LELfe~Ir~eNi----------k~Li~hlve~y~~~l~~i~ 614 (871)
+..|+|.| +-| ++|+ .||= +++.+++.+|||.-|| .+|+.-|| |-.+++++.
T Consensus 183 ~~~n~fp~--kn~-~~gpnv~~~P~y~~-ypT~~~I~n~vr~~ni~~v~L~l~n~~sL~dvLv--yDgKvEK~~ 250 (301)
T COG5111 183 LEKNLFPR--KNF-EEGPNVFYAPKYED-YPTLEDIMNYVRNVNILSVPLRLDNLESLADVLV--YDGKVEKLH 250 (301)
T ss_pred HHhccCCc--cch-hcCCccccCCccCC-CccHHHHHHHHHhceeeeccccHHHHHHHhHhee--ecCeeeeec
Confidence 46667766 222 2333 3332 5789999999998654 44444443 555555543
No 91
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=22.97 E-value=2e+02 Score=24.04 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=33.8
Q ss_pred HHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHH----HhhhccChHhHHHHHHHHHhcCcHHHHHHHH
Q 002882 298 YVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFC----GLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL 369 (871)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c----~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L 369 (871)
++.++++++.+|++-||+.=.++. =+..+..++++.. .....-... +...+.+++-.|++.+|..=|
T Consensus 6 ~i~~~i~~n~~~~~~ll~~~~~~~----f~~~l~~~~~~~~~~~~~~~~~~~~~-~~~y~~~f~~sg~igvi~~Wl 76 (77)
T PF14278_consen 6 EIFEYIYENRDFYKILLSPNGDPN----FQERLKELIKEWITEYINENSPDNDD-PEEYLISFIVSGIIGVIQWWL 76 (77)
T ss_pred HHHHHHHHhHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHHHh
Confidence 466677777666666665322222 2222333333332 111111111 122778889999998887543
No 92
>PF05505 Ebola_NP: Ebola nucleoprotein; InterPro: IPR008609 This family consists of Ebola virus sp., Lake Victoria marburgvirus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus [].; GO: 0019074 viral RNA genome packaging, 0019013 viral nucleocapsid
Probab=22.74 E-value=1e+03 Score=29.08 Aligned_cols=21 Identities=43% Similarity=0.764 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 002882 699 RSGGLVDYDDDEDDEDYRPPP 719 (871)
Q Consensus 699 ~~~~LVdY~ddddd~~~~~~~ 719 (871)
.+++||=++-||||||.+|.|
T Consensus 461 ~~ddl~Lfdlddd~dd~~~~p 481 (717)
T PF05505_consen 461 APDDLVLFDLDDDDDDNKPVP 481 (717)
T ss_pred CCCCeeeeccccCCcccccCc
Confidence 457799888888888888888
No 93
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=22.62 E-value=5.5e+02 Score=26.91 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=55.4
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhc-CCc--------------chHHHHHHHHhccCChhHHHHH
Q 002882 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-EGI--------------PLLGLLVKGMITDFGEDMHCQF 427 (871)
Q Consensus 363 ~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~q-e~~--------------~Ll~~Li~~ll~d~d~glk~Ql 427 (871)
..+.-++.|++.++|.+|...+..+++..-.-+...--.+ ... .+-..|+..|..|.+..+..|+
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4566778899999999999999999998633333221111 111 1223466667788999999999
Q ss_pred HHHHHHhcCCCCC
Q 002882 428 LEILRSLLDSYTL 440 (871)
Q Consensus 428 ~eaLk~LLDp~~m 440 (871)
..+|..|+.....
T Consensus 123 lK~la~Lv~~tPY 135 (182)
T PF13251_consen 123 LKCLAVLVQATPY 135 (182)
T ss_pred HHHHHHHHccCCh
Confidence 9999999986654
No 94
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.35 E-value=2.8e+02 Score=27.79 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002882 491 LSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (871)
Q Consensus 491 l~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~ 570 (871)
+..|+++|..+....... ..+..+...++||||+++..... ....+-..+.+..|...+
T Consensus 109 ~~~L~~~L~~~~~~~~~~-------------------~~~~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v~~i~~~L- 167 (187)
T PF06371_consen 109 LEALLNVLSKLNKKKEKS-------------------EEDIDIEHECLRCLKALMNTKYG-LEAVLSHPDSVNLIALSL- 167 (187)
T ss_dssp HHHHHHHHHHHHTHHCTC-------------------TTCHHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHHHHHHHT--
T ss_pred HHHHHHHHHHhhhhhhhc-------------------chhHHHHHHHHHHHHHHHccHHH-HHHHHcCcHHHHHHHHHH-
Q ss_pred HhCCCCcchHHHHHHHHHHH
Q 002882 571 ANGNRYNLLNSAVLELFEYI 590 (871)
Q Consensus 571 ~ng~R~NLLnSA~LELfe~I 590 (871)
.+.+--+--.++|++-+|
T Consensus 168 --~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 168 --DSPNIKTRKLALEILAAL 185 (187)
T ss_dssp ---TTSHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHH
No 95
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=22.31 E-value=1.8e+02 Score=22.22 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=31.3
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
+..++..+.+...+.||++.+.-++-.|+..++++-
T Consensus 5 ~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 556788899999999999999999999999888763
No 96
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=22.26 E-value=73 Score=38.05 Aligned_cols=90 Identities=16% Similarity=0.266 Sum_probs=65.0
Q ss_pred eeEEEEeCC-CCCceeccc-eEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccccc
Q 002882 16 RVKVYRLND-DGKWDDQGT-GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALS 93 (871)
Q Consensus 16 RVKVY~L~~-~~~W~D~GT-G~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALS 93 (871)
=|++|.-.. -+.|.-.|+ |-+..++.--.....|-..+-.++..|-+..+-.+=.|++-+ |..-=-|.+. +-.+|+
T Consensus 44 VVqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~~rliWdqELY~nf~y~q~r-~ffhtFegdd-c~aGLn 121 (569)
T KOG3671|consen 44 VVQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVNNRLIWDQELYQNFEYRQPR-TFFHTFEGDD-CQAGLN 121 (569)
T ss_pred HHHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecCceeeehHHhhhhceeccCc-cceeeecccc-ceeeec
Confidence 377888743 359999999 998877644345566777777777877788888888887755 5444445553 478999
Q ss_pred ccCccchhHHHHHH
Q 002882 94 FQEPTGCSYIWDNI 107 (871)
Q Consensus 94 FQe~~GC~~IW~~I 107 (871)
|=+-+-|+...+.+
T Consensus 122 F~~E~EA~~F~k~V 135 (569)
T KOG3671|consen 122 FASEEEAQKFRKKV 135 (569)
T ss_pred ccCHHHHHHHHHHH
Confidence 99999888765544
No 97
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.22 E-value=46 Score=33.30 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=17.6
Q ss_pred EEecCCCccccccccccCccc
Q 002882 79 ISWRDPEYSTELALSFQEPTG 99 (871)
Q Consensus 79 IvWte~~~g~DlALSFQe~~G 99 (871)
++|+||. |+|.||.|.-.++
T Consensus 66 vsWtEPT-GTdVaL~f~pne~ 85 (175)
T COG3479 66 VSWTEPT-GTDVALTFNPNEY 85 (175)
T ss_pred EEeeCCC-CceEEEEeccccc
Confidence 6899997 9999999987665
No 98
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=21.61 E-value=6.2e+02 Score=24.87 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=48.1
Q ss_pred hHHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHH--hHHHHHHHHHHHHHhhhccChHh-HHHHHHHHHhcC
Q 002882 284 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEE--SKKNLVHFLHEFCGLSKSLQMVQ-QLRLFRDLMNEG 360 (871)
Q Consensus 284 t~s~LnSlI~fNq~eIV~~Lq~d~~FL~eLF~~l~~~~~~~e--~rrd~v~FL~E~c~lsK~LQ~~~-r~~lf~~Lv~~G 360 (871)
++.+|.+++-.-...+-..+. +..|+.+|...+.++..... -|..++.+|++.-.-.++..... =..+|+.|-+.|
T Consensus 62 aL~lld~lvkNcg~~f~~ev~-~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 62 ALTLLDALVKNCGPRFHREVA-SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHHHSHHHHHHHHT-SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHh-HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHCc
Confidence 345566555543444444444 46799999998887776654 67788888887655444433222 246788887776
No 99
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=21.56 E-value=2e+02 Score=34.88 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhhcc-ChHhHHHHHHHHHhcCcHHHHHHH---HcCC---CcchhhhhhHHHHHHHhcChHHHHHHH
Q 002882 327 KKNLVHFLHEFCGLSKSL-QMVQQLRLFRDLMNEGIFDIVTDA---LQSQ---DKKLVLTGTDILILFLNQDPNLLRSYV 399 (871)
Q Consensus 327 rrd~v~FL~E~c~lsK~L-Q~~~r~~lf~~Lv~~GLl~vi~~~---L~~~---d~~ir~~atDIL~~iie~dP~lvR~~i 399 (871)
..+++.+|.+.|.-+..- ....+..+.++|-+.|+-.++... +... ...+|.+|..-|-.+..+.|..+|..+
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l 563 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL 563 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 445677777777755443 235667788999999954444444 4444 345788888888888999999999876
Q ss_pred Hh
Q 002882 400 VR 401 (871)
Q Consensus 400 ~~ 401 (871)
+.
T Consensus 564 ~~ 565 (618)
T PF01347_consen 564 LP 565 (618)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 100
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=21.21 E-value=5.1e+02 Score=24.08 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
.-+++.+..+.||.. .-|-.++..|++++.--. +...--.+++.++...|+++|.-|-..|+-.|..+
T Consensus 3 ~~~~~al~~L~dp~~--PvRa~gL~~L~~Li~~~~----------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~L 70 (92)
T PF10363_consen 3 ETLQEALSDLNDPLP--PVRAHGLVLLRKLIESKS----------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAAL 70 (92)
T ss_pred HHHHHHHHHccCCCc--chHHHHHHHHHHHHHcCC----------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 346677777887774 467788888888765322 11122346778888889999999999999999999
Q ss_pred HhcChHHH
Q 002882 388 LNQDPNLL 395 (871)
Q Consensus 388 ie~dP~lv 395 (871)
.+.+|.-+
T Consensus 71 a~~~p~~v 78 (92)
T PF10363_consen 71 ADRHPDEV 78 (92)
T ss_pred HHHChHHH
Confidence 99999843
No 101
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=21.14 E-value=3.3e+02 Score=34.35 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=58.5
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002882 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 589 (871)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~ 589 (871)
|.-+...+++.++++|+.+++.-++-.|+|.+-++= -|.-....|++.|++.+++.++... |.- ..|+-++..
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS--fd~~~R~~mV~~GlIPkLv~LL~d~----~~~-~val~iLy~ 396 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS--FDPELRSQMVSLGLIPKLVELLKDP----NFR-EVALKILYN 396 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC--cCHHHHHHHHHCCCcHHHHHHhCCC----chH-HHHHHHHHH
Confidence 667788899999999999999999999999998853 3444588999999999999888532 222 346777766
Q ss_pred HH
Q 002882 590 IR 591 (871)
Q Consensus 590 Ir 591 (871)
|.
T Consensus 397 LS 398 (708)
T PF05804_consen 397 LS 398 (708)
T ss_pred hc
Confidence 64
No 102
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=20.34 E-value=2.4e+02 Score=31.41 Aligned_cols=69 Identities=16% Similarity=0.342 Sum_probs=55.1
Q ss_pred HHHhhccchhhhHHhhhhHHHHHHHhh-----hccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHH
Q 002882 500 FCVLHHPYRIKCNFLLNNVVDKVLLLT-----RRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (871)
Q Consensus 500 Fcv~~H~yriK~~il~~nll~rVl~Ll-----~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f 569 (871)
=||-.|+- .|.-|++-++...+-..| .+++-+|+|+||-.+-+++.-.|...++|+..-.+..--+...
T Consensus 104 QcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 104 QCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 47888886 566788888877766554 3567799999999999999999999999999998876555443
No 103
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=20.29 E-value=1.6e+02 Score=29.04 Aligned_cols=52 Identities=6% Similarity=0.238 Sum_probs=41.6
Q ss_pred hHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHH
Q 002882 517 NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA 571 (871)
Q Consensus 517 nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ 571 (871)
.++..+.+=|+.+..|+++-|||+++.|+....+-|.+.+.+|- +++..+..
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~---~~Ik~~~~ 89 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS---AQIRECAN 89 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH---HHHHHHHH
Confidence 45566666667788999999999999999999999999998883 56665543
Done!