Query 002882
Match_columns 871
No_of_seqs 186 out of 262
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:16:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rrp_B Nuclear pore complex pr 98.8 1.8E-08 6E-13 97.1 9.5 98 15-112 27-133 (134)
2 1xke_A RAN-binding protein 2; 97.9 4.4E-05 1.5E-09 73.1 9.9 100 15-114 13-121 (130)
3 3n7c_A ABR034WP; nuclear pore 97.9 4.7E-05 1.6E-09 73.0 9.5 100 15-114 16-122 (130)
4 2ec1_A Nucleoporin 50 kDa; ran 97.8 9.1E-05 3.1E-09 70.5 10.6 96 15-112 18-124 (125)
5 4hxt_A De novo protein OR329; 97.8 0.0021 7.1E-08 64.0 20.9 218 310-570 4-222 (252)
6 1k5d_B RAN-specific GTPase-act 97.8 9.1E-05 3.1E-09 75.9 10.9 100 15-114 51-162 (201)
7 4hat_B RAN-specific GTPase-act 97.7 0.00014 4.6E-09 70.7 9.7 99 15-113 28-136 (140)
8 3m1i_B RAN-specific GTPase-act 97.7 0.00016 5.6E-09 73.4 10.2 99 15-113 79-187 (191)
9 2crf_A RAN binding protein 3; 97.6 0.00017 5.7E-09 70.8 8.6 92 15-107 32-132 (150)
10 2y8g_A Ranbp3-B, RAN-binding p 97.5 0.00023 7.9E-09 68.9 8.8 91 15-106 20-119 (138)
11 1xqr_A HSPBP1 protein; armadil 97.5 0.015 5.3E-07 62.3 23.7 203 306-547 26-239 (296)
12 3tpo_A Importin subunit alpha- 97.4 0.067 2.3E-06 60.9 29.2 241 309-591 205-448 (529)
13 4db8_A Armadillo-repeat protei 97.3 0.03 1E-06 56.2 21.7 221 308-571 12-233 (252)
14 2jdq_A Importin alpha-1 subuni 97.3 0.038 1.3E-06 60.0 23.8 224 308-571 64-287 (450)
15 3ul1_B Importin subunit alpha- 97.3 0.059 2E-06 61.2 26.1 241 309-591 186-429 (510)
16 4hxt_A De novo protein OR329; 97.2 0.063 2.2E-06 53.2 22.1 202 308-551 44-246 (252)
17 4b8j_A Importin subunit alpha- 97.2 0.086 2.9E-06 59.3 25.8 234 309-584 118-351 (528)
18 4b8j_A Importin subunit alpha- 97.1 0.25 8.7E-06 55.4 29.1 237 308-590 160-399 (528)
19 1wa5_B Importin alpha subunit; 97.1 0.076 2.6E-06 59.9 24.7 237 308-590 215-455 (530)
20 1wa5_B Importin alpha subunit; 96.9 0.086 2.9E-06 59.5 22.9 222 309-571 131-352 (530)
21 1qc6_A EVH1 domain from ENA/VA 96.8 0.0042 1.4E-07 59.3 9.6 98 15-114 9-112 (130)
22 4db6_A Armadillo repeat protei 96.6 0.3 1E-05 47.5 21.0 193 311-545 15-208 (210)
23 3tpo_A Importin subunit alpha- 96.5 0.078 2.7E-06 60.3 19.1 186 354-570 156-345 (529)
24 2jdq_A Importin alpha-1 subuni 96.5 0.41 1.4E-05 51.7 23.9 202 308-550 192-394 (450)
25 4db8_A Armadillo-repeat protei 96.5 0.35 1.2E-05 48.3 21.7 196 308-545 54-250 (252)
26 4db6_A Armadillo repeat protei 96.4 0.32 1.1E-05 47.3 20.1 183 355-570 7-190 (210)
27 1evh_A WH1 domain, protein (ME 96.3 0.017 5.9E-07 53.8 9.5 95 14-110 8-107 (112)
28 1ddw_A GLGF-domain protein hom 96.3 0.015 5E-07 55.0 9.0 99 14-114 8-110 (120)
29 1egx_A VAsp, vasodilator-stimu 96.2 0.02 6.9E-07 53.7 9.4 96 14-111 8-110 (115)
30 1jdh_A Beta-catenin; beta-cate 96.0 1.8 6.2E-05 47.8 25.9 235 308-587 101-335 (529)
31 3ul1_B Importin subunit alpha- 95.8 0.24 8.1E-06 56.2 17.8 185 354-569 137-325 (510)
32 1i2h_A PSD-ZIP45(homer-1C/VESL 95.7 0.052 1.8E-06 54.1 10.5 104 8-113 7-114 (168)
33 2z6h_A Catenin beta-1, beta-ca 95.7 0.91 3.1E-05 52.7 22.7 237 309-589 225-484 (644)
34 2z6h_A Catenin beta-1, beta-ca 95.4 2.7 9.1E-05 48.8 25.4 236 308-588 98-333 (644)
35 4fdd_A Transportin-1; heat rep 95.2 3.3 0.00011 49.5 25.8 210 301-547 38-286 (852)
36 4fdd_A Transportin-1; heat rep 95.0 4 0.00014 48.8 25.9 218 306-552 126-394 (852)
37 2z6g_A B-catenin; FULL-length, 94.6 7.7 0.00026 46.5 26.9 257 305-584 189-465 (780)
38 2jp2_A Spred-2, sprouty-relate 94.4 0.21 7E-06 47.6 10.0 95 14-110 17-120 (126)
39 1jdh_A Beta-catenin; beta-cate 94.0 1.7 5.8E-05 48.0 18.3 184 356-572 13-197 (529)
40 1xod_A Spred1; sprouty, EVH1, 93.7 0.24 8.2E-06 46.6 8.9 97 13-111 7-112 (118)
41 2z6g_A B-catenin; FULL-length, 93.7 4.8 0.00016 48.3 22.5 212 310-571 117-329 (780)
42 3b2a_A TON_1937, putative unch 93.6 1.2 4.1E-05 46.9 14.8 151 358-548 31-181 (265)
43 4gmo_A Putative uncharacterize 93.4 1.3 4.5E-05 52.4 16.8 191 354-560 29-227 (684)
44 1ibr_B P95, importin beta-1 su 92.9 8.8 0.0003 41.2 21.2 210 307-547 34-289 (462)
45 2ifs_A N-WAsp, wiskott-aldrich 92.7 0.52 1.8E-05 47.0 10.0 95 17-113 65-159 (169)
46 3now_A UNC-45 protein, SD10334 92.6 8.4 0.00029 46.9 22.4 235 305-571 418-676 (810)
47 1mke_A WIP - N-WAsp, fusion pr 92.6 0.53 1.8E-05 46.2 9.8 95 17-113 48-142 (152)
48 1ibr_B P95, importin beta-1 su 92.6 3.8 0.00013 44.1 17.7 210 308-547 172-396 (462)
49 1xqr_A HSPBP1 protein; armadil 92.3 6.7 0.00023 41.8 18.9 183 376-592 56-238 (296)
50 2qk2_A LP04448P; mini spindles 92.3 6 0.0002 39.7 17.7 193 313-556 20-216 (242)
51 2bpt_A Importin beta-1 subunit 91.7 12 0.00041 43.9 21.9 242 307-590 38-293 (861)
52 1w63_A Adapter-related protein 91.4 23 0.0008 41.0 23.7 211 360-594 142-398 (618)
53 1qgr_A Protein (importin beta 91.3 27 0.00093 40.9 24.9 230 308-569 172-417 (876)
54 3now_A UNC-45 protein, SD10334 91.3 6.7 0.00023 47.8 19.5 200 309-591 581-781 (810)
55 3nmw_A APC variant protein; AR 91.0 9.2 0.00032 41.7 18.7 212 323-570 97-315 (354)
56 1w63_A Adapter-related protein 90.6 18 0.00063 41.9 21.8 69 362-440 315-383 (618)
57 2bpt_A Importin beta-1 subunit 90.3 33 0.0011 40.2 24.4 206 361-590 455-666 (861)
58 1qgr_A Protein (importin beta 90.0 22 0.00075 41.7 22.1 240 307-590 34-286 (876)
59 3opb_A SWI5-dependent HO expre 89.2 13 0.00044 45.1 19.3 263 301-590 369-727 (778)
60 3nmz_A APC variant protein; pr 88.6 18 0.00062 41.0 19.1 211 324-570 214-431 (458)
61 3grl_A General vesicular trans 88.3 14 0.00047 44.0 18.2 106 489-595 137-244 (651)
62 2vgl_A Adaptor protein complex 86.9 4.9 0.00017 47.1 13.5 68 360-435 146-215 (621)
63 1xm9_A Plakophilin 1; armadill 85.8 29 0.001 38.5 18.6 208 310-545 4-219 (457)
64 3nmw_A APC variant protein; AR 84.6 16 0.00054 39.8 15.4 227 324-590 46-291 (354)
65 3nmz_A APC variant protein; pr 83.7 24 0.00083 39.9 16.9 205 355-590 184-407 (458)
66 2qk2_A LP04448P; mini spindles 83.0 38 0.0013 33.7 16.4 162 367-569 22-185 (242)
67 3grl_A General vesicular trans 81.3 61 0.0021 38.6 19.3 232 285-550 143-398 (651)
68 1xm9_A Plakophilin 1; armadill 76.2 54 0.0018 36.4 16.3 176 362-571 4-196 (457)
69 1u6g_C TIP120 protein, CAND1; 76.2 91 0.0031 38.8 20.0 218 308-572 6-225 (1230)
70 3ltm_A Alpha-REP4; protein eng 75.9 51 0.0018 31.6 14.3 78 305-384 16-105 (211)
71 3l6x_A Catenin delta-1; cateni 75.6 51 0.0018 38.6 16.5 159 408-592 310-477 (584)
72 2vgl_B AP-2 complex subunit be 74.7 1.2E+02 0.0043 34.6 20.9 84 346-437 100-190 (591)
73 2npp_B PP2A, B subunit, serine 74.6 9.7 0.00033 43.3 9.7 125 298-438 270-401 (449)
74 3syx_A Sprouty-related, EVH1 d 72.7 10 0.00035 36.3 7.8 95 15-111 16-119 (130)
75 3fga_B Serine/threonine-protei 71.3 1.1E+02 0.0039 34.2 17.1 248 137-439 96-369 (403)
76 2qk1_A Protein STU2; STU2P, XM 71.0 59 0.002 33.3 14.0 184 323-545 29-219 (249)
77 2lyd_A Decapping protein 1; DC 69.9 17 0.00057 34.8 8.7 93 16-112 37-132 (134)
78 2vgl_A Adaptor protein complex 69.3 71 0.0024 37.2 15.8 67 364-439 333-401 (621)
79 3tt9_A Plakophilin-2; cell adh 57.0 91 0.0031 32.0 12.2 114 310-435 10-123 (233)
80 1u6g_C TIP120 protein, CAND1; 56.2 3.7E+02 0.013 33.3 22.3 271 308-603 475-780 (1230)
81 1wa5_C Importin alpha RE-expor 51.7 3.9E+02 0.013 32.3 22.0 90 299-397 26-127 (960)
82 2qkl_A DCP1 protein, SPBC3B9.2 51.6 53 0.0018 31.1 8.5 89 16-110 32-124 (127)
83 3ltj_A Alpharep-4; protein eng 49.8 1.7E+02 0.0059 27.6 14.9 24 361-384 77-100 (201)
84 2qk1_A Protein STU2; STU2P, XM 49.6 46 0.0016 34.1 8.5 76 307-389 145-220 (249)
85 1b3u_A Protein (protein phosph 46.9 3.2E+02 0.011 29.9 21.0 105 309-435 165-270 (588)
86 2vgl_B AP-2 complex subunit be 46.1 3.8E+02 0.013 30.5 18.5 69 310-394 15-83 (591)
87 2of3_A ZYG-9; multifunctional 45.6 2.5E+02 0.0085 29.5 13.5 147 369-545 55-235 (266)
88 3a6p_A Exportin-5; exportin-5, 45.5 2.9E+02 0.01 34.8 16.4 178 305-504 131-332 (1204)
89 2x19_B Importin-13; nuclear tr 44.2 4.8E+02 0.016 31.1 21.4 324 257-610 81-454 (963)
90 2jak_A Serine/threonine-protei 43.9 2.2E+02 0.0076 31.7 13.3 84 298-391 282-374 (392)
91 3m1i_C Exportin-1; heat repeat 40.3 1.2E+02 0.004 37.3 11.5 65 318-390 812-879 (1049)
92 3tt9_A Plakophilin-2; cell adh 37.7 2.9E+02 0.0099 28.2 12.3 89 507-597 42-130 (233)
93 3vld_A DNA mismatch repair pro 33.6 6.1E+02 0.021 29.2 17.9 120 363-520 119-245 (500)
94 1oyz_A Hypothetical protein YI 33.4 3.7E+02 0.013 26.7 12.9 20 361-380 129-148 (280)
95 1upk_A MO25 protein; transfera 32.1 5.4E+02 0.018 28.2 17.9 236 297-572 13-266 (341)
96 1b3u_A Protein (protein phosph 29.3 5.9E+02 0.02 27.7 20.5 189 324-569 101-290 (588)
97 3gs3_A Symplekin, LD45768P; he 28.4 3.8E+02 0.013 27.9 11.4 72 308-397 53-124 (257)
98 3ltm_A Alpha-REP4; protein eng 27.6 3.9E+02 0.013 25.2 17.3 41 345-385 32-75 (211)
99 2jby_A M11L protein; apoptosis 27.5 91 0.0031 29.6 5.7 85 327-418 36-128 (145)
100 2fv2_A RCD1 required for cell 27.2 77 0.0026 33.7 5.8 77 492-569 71-154 (268)
101 3m1i_C Exportin-1; heat repeat 27.1 9.3E+02 0.032 29.3 23.8 223 305-546 135-373 (1049)
102 1x5b_A Signal transducing adap 26.6 3.2E+02 0.011 26.5 9.8 110 310-436 16-125 (163)
103 1juq_A ADP-ribosylation factor 25.2 4.6E+02 0.016 25.5 10.8 110 310-436 14-128 (171)
104 3dad_A FH1/FH2 domain-containi 25.1 5.7E+02 0.02 27.9 12.4 153 301-466 144-315 (339)
105 1dvp_A HRS, hepatocyte growth 25.0 3.2E+02 0.011 27.4 9.9 110 310-436 6-115 (220)
106 3zyq_A Hepatocyte growth facto 24.0 3E+02 0.01 27.9 9.5 111 309-436 8-118 (226)
107 1w9c_A CRM1 protein, exportin 23.2 3.8E+02 0.013 29.0 10.5 63 319-390 131-197 (321)
108 3l6x_A Catenin delta-1; cateni 23.0 2.2E+02 0.0074 33.3 9.1 96 507-603 80-184 (584)
109 3o2t_A Symplekin; heat repeat, 21.8 5.7E+02 0.02 28.3 11.8 71 308-396 63-133 (386)
110 2of3_A ZYG-9; multifunctional 21.5 4.1E+02 0.014 27.9 10.1 32 307-340 131-162 (266)
111 3eg5_B Protein diaphanous homo 21.0 6.2E+02 0.021 27.7 12.0 131 325-464 135-273 (383)
112 3ldz_A STAM-1, signal transduc 20.6 4.4E+02 0.015 24.7 9.3 106 311-434 7-112 (140)
No 1
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=98.77 E-value=1.8e-08 Score=97.11 Aligned_cols=98 Identities=22% Similarity=0.401 Sum_probs=84.3
Q ss_pred CeeEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccc--cCeEEEecCC-----C-
Q 002882 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQ--EDTIISWRDP-----E- 85 (871)
Q Consensus 15 rRVKVY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQ--qeTLIvWte~-----~- 85 (871)
.|+|||.++ ++++|.++|+|.+.+-.........|++|.+.....+|.+.|.++-.|+.+ .+..++|+-. +
T Consensus 27 ~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~ 106 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELP 106 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBCSTTCTTEEEEEEEECTTSSC
T ss_pred EEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEeecCCCCeEEEEEcccccCCCC
Confidence 699999996 467999999999998766666789999999999999999999999999986 4689999732 1
Q ss_pred ccccccccccCccchhHHHHHHHHHhh
Q 002882 86 YSTELALSFQEPTGCSYIWDNICNVQR 112 (871)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~I~~VQ~ 112 (871)
....+||.|..++.|+++|+.|.+.|.
T Consensus 107 k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 107 KPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 125799999999999999999999874
No 2
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=97.89 E-value=4.4e-05 Score=73.10 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=83.2
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEec-----CCCc
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR-----DPEY 86 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt-----e~~~ 86 (871)
.|+|||.+.+ ++.|.++|+|-+.+-.........|++|.+.....+|.+.|.++-.|+... +.-++|+ |.+.
T Consensus 13 ~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~~~~~~d~~d~~~ 92 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDA 92 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEECSSSCS
T ss_pred EEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEEEEEecccCCCCC
Confidence 5899999953 578999999999987655567799999999988899999999999998764 6678898 3221
Q ss_pred -cccccccccCccchhHHHHHHHHHhhcc
Q 002882 87 -STELALSFQEPTGCSYIWDNICNVQRNL 114 (871)
Q Consensus 87 -g~DlALSFQe~~GC~~IW~~I~~VQ~~~ 114 (871)
-.-+||.|-.++-++++.+.|.+.|...
T Consensus 93 ~~~~~~irfks~e~a~~f~~~~ee~k~~~ 121 (130)
T 1xke_A 93 KLEQLAAKFKTPELAEEFKQKFEECQRLL 121 (130)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 1358999999999999999999999754
No 3
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=97.85 E-value=4.7e-05 Score=72.99 Aligned_cols=100 Identities=9% Similarity=0.225 Sum_probs=80.1
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeC-CCcceeEEEEecCCCcceeEeecCCCCcccccc---CeEEEecCCCc--c
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSME-RSEELCLFVIDEEDNETILLHRISPDDIYRKQE---DTIISWRDPEY--S 87 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e-~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq---eTLIvWte~~~--g 87 (871)
.|+|||.+.. ++.|.++|+|-+.+-... ......|++|.+.....+|.+.|.++-.|++.. .+.+.|..++. -
T Consensus 16 ~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~v~~~~~~dgk~ 95 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDADNENLIKWPIITDGKL 95 (130)
T ss_dssp EEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTTCTTEEEEEEEETTEE
T ss_pred EEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCCCccEEEEEecCCCce
Confidence 5899999964 468999999999985433 245689999999888899999999999998875 68888873321 2
Q ss_pred ccccccccCccchhHHHHHHHHHhhcc
Q 002882 88 TELALSFQEPTGCSYIWDNICNVQRNL 114 (871)
Q Consensus 88 ~DlALSFQe~~GC~~IW~~I~~VQ~~~ 114 (871)
.-+||.|-.++-++++-+.|.+.|...
T Consensus 96 ~~~~lrfks~e~A~~f~~~iee~~~~~ 122 (130)
T 3n7c_A 96 ETFIIKVKQKADGRRLVGAVADAQQAM 122 (130)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHhhh
Confidence 468999999999999999999998765
No 4
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=9.1e-05 Score=70.53 Aligned_cols=96 Identities=10% Similarity=0.266 Sum_probs=79.4
Q ss_pred CeeEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCC-CcceeEeecCCCCccccc-cCeEEEecCCC---cc--
Q 002882 15 QRVKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEED-NETILLHRISPDDIYRKQ-EDTIISWRDPE---YS-- 87 (871)
Q Consensus 15 rRVKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d-~~~LL~s~I~~~d~YqkQ-qeTLIvWte~~---~g-- 87 (871)
.|.|+|...+ ++|.+||+|-+.+--.+ .....|++|.+.. +..+|.+.|.++-.|+.. .+++.+|.=+. .+
T Consensus 18 ~raKLf~~~~-~~WkERGvG~lki~~~k-~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~~~~~~~~~~d~~~ 95 (125)
T 2ec1_A 18 KKCKLFYKKD-NEFKEKGIGTLHLKPTA-NQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKN 95 (125)
T ss_dssp EEEEEEEECS-SSEEEEEEEEEEEEECS-SSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEEEEECCSSCSCSSS
T ss_pred EeeEEEEecC-CCcccccEEEEEeeecC-CCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEEEEEccCCcccCCC
Confidence 6999999975 79999999999986433 4679999999986 788999999999999987 47888886321 12
Q ss_pred ----ccccccccCccchhHHHHHHHHHhh
Q 002882 88 ----TELALSFQEPTGCSYIWDNICNVQR 112 (871)
Q Consensus 88 ----~DlALSFQe~~GC~~IW~~I~~VQ~ 112 (871)
.-+||-|-.++-++++.+.|.+.|.
T Consensus 96 ~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 96 ATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp SSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 2499999999999999999988774
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.80 E-value=0.0021 Score=64.03 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=157.5
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
++.|...+.+++ .+.|..++..|..++.-.. ..-..+++.|.++.+-..|++++..++..++..|..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPA--------SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCc--------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 566777777655 5677888877777654321 233567788999999999999999999999999999999
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 468 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~ 468 (871)
.++.. |..+.+.. .+..|++.| .+.++.++.....+|..|.... +.....+.+ ..++.|++-|.+
T Consensus 74 ~~~~~-~~~~~~~~---~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~L~~~l~~-- 139 (252)
T 4hxt_A 74 GPDEA-IKAIVDAG---GVEVLVKLL-TSTDSEVQKEAARALANIASGP-------DEAIKAIVDAGGVEVLVKLLTS-- 139 (252)
T ss_dssp SCHHH-HHHHHHTT---HHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChHH-HHHHHHCC---CHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHcC--
Confidence 88774 55555433 344555544 5678999999999999997421 112223333 345666544321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002882 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (871)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~ 548 (871)
..+.+....+..|+.+...++.+ +..+...+++..++.++.+.+.-++..|++++..+.. .
T Consensus 140 -----------------~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~ 200 (252)
T 4hxt_A 140 -----------------TDSEVQKEAARALANIASGPDEA-IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-G 200 (252)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-S
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-C
Confidence 12345667788888877765544 4467778899999999999999999999999999876 4
Q ss_pred hhHHHHHHHhcCChHHHHHHHH
Q 002882 549 DEHLINHFVKNNLLKPIVDAFV 570 (871)
Q Consensus 549 Defy~ryiIk~nLf~PIl~~f~ 570 (871)
+.-..+.+++.+++.+++.++.
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGG
T ss_pred CHHHHHHHHHCCCHHHHHHHHC
Confidence 5557788899999999888774
No 6
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=97.79 E-value=9.1e-05 Score=75.91 Aligned_cols=100 Identities=19% Similarity=0.339 Sum_probs=82.5
Q ss_pred CeeEEEEe--C-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEec---CCCc
Q 002882 15 QRVKVYRL--N-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR---DPEY 86 (871)
Q Consensus 15 rRVKVY~L--~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt---e~~~ 86 (871)
.|.|||++ . +++.|.+||+|-+.+-........+|++|.+.....+|.+.|.++-.|+++. +.-++|+ +...
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad 130 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFAD 130 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTT
T ss_pred EeeeEEEecccccCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCC
Confidence 69999999 3 3578999999999987655556799999999999999999999999999874 5689994 2211
Q ss_pred c----ccccccccCccchhHHHHHHHHHhhcc
Q 002882 87 S----TELALSFQEPTGCSYIWDNICNVQRNL 114 (871)
Q Consensus 87 g----~DlALSFQe~~GC~~IW~~I~~VQ~~~ 114 (871)
+ .-+||.|-.++-+..+...|...|..+
T Consensus 131 ~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~ 162 (201)
T 1k5d_B 131 ECPKPELLAIRFLNAENAQKFKTKFEECRKEI 162 (201)
T ss_dssp SSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 1 348999999999999999999998754
No 7
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=97.68 E-value=0.00014 Score=70.68 Aligned_cols=99 Identities=16% Similarity=0.313 Sum_probs=81.1
Q ss_pred CeeEEEEeC-CCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEec---CCCcc-
Q 002882 15 QRVKVYRLN-DDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWR---DPEYS- 87 (871)
Q Consensus 15 rRVKVY~L~-~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWt---e~~~g- 87 (871)
.|+|+|.+. +++.|.++|+|-+.+-.........|++|.+.....+|.+.|.++-.|+... +.-++|. |-..|
T Consensus 28 ~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~s~k~~v~~~~~D~sdg~ 107 (140)
T 4hat_B 28 VRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGE 107 (140)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSS
T ss_pred EeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCeEEeEcCCCCceEEEEccccCCCCC
Confidence 589999995 3578999999999986555556799999999988999999999999999875 4577895 21112
Q ss_pred ---ccccccccCccchhHHHHHHHHHhhc
Q 002882 88 ---TELALSFQEPTGCSYIWDNICNVQRN 113 (871)
Q Consensus 88 ---~DlALSFQe~~GC~~IW~~I~~VQ~~ 113 (871)
.-+|+-|-.++-++++.+.|...|..
T Consensus 108 ~~~~~~~iRfk~~e~A~~f~~~~ee~~~~ 136 (140)
T 4hat_B 108 AEAFTFAIRFGSKENADKFKEEFEKAQEI 136 (140)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999888864
No 8
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00016 Score=73.38 Aligned_cols=99 Identities=14% Similarity=0.278 Sum_probs=81.5
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCcccccc--CeEEEecCC---Ccc-
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQE--DTIISWRDP---EYS- 87 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQq--eTLIvWte~---~~g- 87 (871)
.|+|||++.. ++.|.+||+|.+.+-........+|++|.+.....+|.+.|.++-.|++.. +.-+||.=+ ..|
T Consensus 79 ~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge 158 (191)
T 3m1i_B 79 VRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGE 158 (191)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSS
T ss_pred EeeEEEEEecCCCCccceeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCCCcEEeECCCCCceEEEEecCcCCCCC
Confidence 6999999953 578999999999986554456799999999988999999999999999984 457888721 112
Q ss_pred ---ccccccccCccchhHHHHHHHHHhhc
Q 002882 88 ---TELALSFQEPTGCSYIWDNICNVQRN 113 (871)
Q Consensus 88 ---~DlALSFQe~~GC~~IW~~I~~VQ~~ 113 (871)
.-+||.|-.++-+..+...|...|..
T Consensus 159 ~k~e~~aIRFk~~E~A~eF~~~~eeaq~~ 187 (191)
T 3m1i_B 159 AEAFTFAIRFGSKENADKFKEEFEKAQEI 187 (191)
T ss_dssp CEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999888864
No 9
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=97.57 E-value=0.00017 Score=70.76 Aligned_cols=92 Identities=14% Similarity=0.242 Sum_probs=73.3
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeC----CCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEec--CCCc-
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSME----RSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWR--DPEY- 86 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e----~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWt--e~~~- 86 (871)
.|+|||.+.. ++.|.++|+|.+.+-... ......|++|.+.....+|.+.|.++-.|++..++-++|+ |++.
T Consensus 32 ~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~ 111 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQ 111 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSSEEEEEEEBSSSC
T ss_pred EEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCceeecCCCCEEEEEeecCCCC
Confidence 5899999953 578999999999876532 2345899999998888999999999999999999999999 4321
Q ss_pred -cccccccccCccchhHHHHHH
Q 002882 87 -STELALSFQEPTGCSYIWDNI 107 (871)
Q Consensus 87 -g~DlALSFQe~~GC~~IW~~I 107 (871)
-.-++|.|..++-+. .+..|
T Consensus 112 ~~~~~lirfk~~e~a~-lf~~~ 132 (150)
T 2crf_A 112 GVKVFLISASSKDTGQ-LYAAL 132 (150)
T ss_dssp CEEEEEEECCHHHHHH-HHHHH
T ss_pred ceEEEEEEECCHHHHH-HHHHH
Confidence 246899999888874 44433
No 10
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=97.52 E-value=0.00023 Score=68.85 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=71.8
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEeCC----CcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCC----
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSMER----SEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPE---- 85 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~e~----~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~---- 85 (871)
.|.|+|.+.. ++.|.++|+|.+.+-.... .....|++|.+.....+|.+.|.++-.|+++.+.-++|+-.+
T Consensus 20 ~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k~~~~~~~d~~d~ 99 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQ 99 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCEEEEETTEEEEECCC--CC
T ss_pred EEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCceeecCCCCEEEEEEecCCCC
Confidence 5899999964 5789999999998765431 245899999998888899999999999999889999998321
Q ss_pred ccccccccccCccchhHHHHH
Q 002882 86 YSTELALSFQEPTGCSYIWDN 106 (871)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~ 106 (871)
.-.-++|.|-.++-+ ..+..
T Consensus 100 ~~~~~lirfk~~e~a-~lf~~ 119 (138)
T 2y8g_A 100 GVKVFLISASSKDTG-QLYAA 119 (138)
T ss_dssp CCCEEEEECCHHHHH-HHHHH
T ss_pred ceEEEEEEECCHHHH-HHHHH
Confidence 124689999888766 34433
No 11
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.51 E-value=0.015 Score=62.33 Aligned_cols=203 Identities=11% Similarity=0.163 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHhCCC----------CCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHH-HHcCCCc
Q 002882 306 DSTFIQELFARLRSP----------TTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTD-ALQSQDK 374 (871)
Q Consensus 306 d~~FL~eLF~~l~~~----------~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~-~L~~~d~ 374 (871)
+.+-|+++...+.++ +.+.+.|..+..-|.++|. ++. . -..+++.|.++.+-. .|.++++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~---~~d--n----a~~~~~~G~l~~Lv~~lL~s~~~ 96 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE---NMD--N----AADFCQLSGMHLLVGRYLEAGAA 96 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT---SHH--H----HHHHHHTTHHHHHHHTTTTCSSH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh---Chh--h----HHHHHHcCCHHHHHHHHHcCCCH
Confidence 346678888888887 3344566666655555443 332 1 224678898888877 8999999
Q ss_pred chhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH
Q 002882 375 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE 454 (871)
Q Consensus 375 ~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~ 454 (871)
.+|..|+-+|..+...+|. .|..+++.. -+..|+.+|-.+.+..++...+-||-.|.-... +....|++ .
T Consensus 97 ~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g---~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~---~~~~~~~~---~ 166 (296)
T 1xqr_A 97 GLRWRAAQLIGTCSQNVAA-IQEQVLGLG---ALRKLLRLLDRDACDTVRVKALFAISCLVREQE---AGLLQFLR---L 166 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHTT---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHhCCHH-HHHHHHHCC---CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc---HHHHHHHH---C
Confidence 9999999999999999998 577777654 334455555556678888888888888863221 12223333 2
Q ss_pred hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhH
Q 002882 455 KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLV 534 (871)
Q Consensus 455 ~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~ 534 (871)
..++.|+.-|... ...+....|-.|+.++..++ ..+.++...+++..++.||.+++.-++
T Consensus 167 ggi~~L~~lL~~~-------------------d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i~~Lv~LL~~~d~~v~ 226 (296)
T 1xqr_A 167 DGFSVLMRAMQQQ-------------------VQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTEHSPFH 226 (296)
T ss_dssp THHHHHHHHHHSS-------------------CHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHHHHHHHHHTSCCSTHH
T ss_pred CCHHHHHHHHcCC-------------------CHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCHHHHHHHHcCCChhHH
Confidence 4566666655321 23345566777777776644 346678889999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 002882 535 VAAVRFVRTILSR 547 (871)
Q Consensus 535 LaAlRF~R~iI~l 547 (871)
-.|++.+.+|+..
T Consensus 227 ~~al~aL~~l~~~ 239 (296)
T 1xqr_A 227 EHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.44 E-value=0.067 Score=60.89 Aligned_cols=241 Identities=14% Similarity=0.137 Sum_probs=154.0
Q ss_pred HHHHHHHHhCCCCCc---HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHH
Q 002882 309 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 385 (871)
Q Consensus 309 FL~eLF~~l~~~~~~---~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~ 385 (871)
.+.-|...+..+..+ ..-.+.++..|..+|.-....... ..-.|+++++-..|.+++..++..++-.|.
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH--------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH--------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 356666666655432 233455555555555432222211 112467888989999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 002882 386 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 465 (871)
Q Consensus 386 ~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~ 465 (871)
++.++++.... .+.... .+..|++.| ...+..++.....+|..|.-... ..+..+++ ...++.|+.-|
T Consensus 277 ~l~~~~~~~~~-~v~~~g---~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~---~~~~~i~~---~g~l~~L~~LL- 344 (529)
T 3tpo_A 277 YLTDGPNERIE-MVVKKG---VVPQLVKLL-GATELPIVTPALRAIGNIVTGTD---EQTQKVID---AGALAVFPSLL- 344 (529)
T ss_dssp HHHSSCHHHHH-HHHTTT---CHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHH---TTGGGGHHHHT-
T ss_pred HhhhhhhhhHH-HHHhcc---chHHHHHHh-cCCChhHHHHHHHHHHHHHccch---HHHHHHhh---cccHHHHHHHH-
Confidence 99998887543 333322 444555544 56788888888888887753211 11111111 12233333322
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
.. .+..+-...|-.|+-+..+... .+..++..+++..++.++.+.+.-++-.|+..+.++.
T Consensus 345 ~~------------------~~~~i~~~a~~aL~nl~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 345 TN------------------PKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp TC------------------SSHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred cC------------------CCHHHHHHHHHHHHHHhcccHH-HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11 1223444555666665554443 3556778889999999999999899999999999988
Q ss_pred cCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002882 546 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (871)
Q Consensus 546 ~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir 591 (871)
.-.+.-..+||++.+.+.|+++++.. .|.=+-..+|+-++.|.
T Consensus 406 ~~~~~~~~~~l~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 406 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCcCHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 77777788999999999999998843 33444456677766664
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.30 E-value=0.03 Score=56.18 Aligned_cols=221 Identities=11% Similarity=0.095 Sum_probs=153.0
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
..++.++..+.+++. +.+..++..|..+..- . ...-+.+++.|.++.+-..|++++..++..++.+|..+
T Consensus 12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~----~----~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSD----G----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (252)
T ss_dssp CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH----H----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcC----C----CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 346777777776554 5667777766554332 1 12234578899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHh
Q 002882 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITA 466 (871)
Q Consensus 388 ie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~ 466 (871)
...++.. +..+.+.. .+..|++.| .+.++.++.+...+|..|..... .+ ...+.+ ..++.|++-|.+
T Consensus 82 ~~~~~~~-~~~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~----~~---~~~~~~~~~i~~L~~lL~~ 149 (252)
T 4db8_A 82 ASGGNEQ-IQAVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGGN----EQ---IQAVIDAGALPALVQLLSS 149 (252)
T ss_dssp TTSCHHH-HHHHHHTT---HHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH----HH---HHHHHHTTHHHHHHHGGGC
T ss_pred hcCCHHH-HHHHHHcC---CHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCc----hH---HHHHHHCCCHHHHHHHHhC
Confidence 9988874 44455432 345555544 55789999999999999964321 11 122333 355666554421
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002882 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (871)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 546 (871)
....+....+..|+.+....+.. +..+...+++..++.++...+..++..|++.+.++..
T Consensus 150 -------------------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 150 -------------------PNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 12344456667777666554433 4456778899999999999999999999999999885
Q ss_pred CchhHHHHHHHhcCChHHHHHHHHH
Q 002882 547 RHDEHLINHFVKNNLLKPIVDAFVA 571 (871)
Q Consensus 547 l~Defy~ryiIk~nLf~PIl~~f~~ 571 (871)
. ++-....+++.+.+.+++.++..
T Consensus 210 ~-~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 210 G-GNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp S-CHHHHHHHHHTTHHHHHHTTTTC
T ss_pred C-CHHHHHHHHHCCcHHHHHHHhCC
Confidence 4 44466678899999998877743
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.28 E-value=0.038 Score=59.95 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=159.1
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
.+++.|...++++. +..-|..++..|..++.... . .-+.+++.|+++.+-..|++++..+|..|+..|..+
T Consensus 64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~----~----~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNS----L----QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134 (450)
T ss_dssp THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCH----H----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCH----H----HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56777777777652 45677888888887765321 1 123567899999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002882 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (871)
Q Consensus 388 ie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 467 (871)
...+|. .|..+++.. .+..|++.|-.+.+..++.+...+|..|.....-.. .. . +....++.|++-+.+
T Consensus 135 ~~~~~~-~~~~~~~~~---~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~-~----~~~~~l~~L~~~l~~- 203 (450)
T 2jdq_A 135 AGDSTM-CRDYVLDCN---ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EF-A----KVSPCLNVLSWLLFV- 203 (450)
T ss_dssp HTTCHH-HHHHHHHTT---CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CG-G----GTGGGHHHHHHHTTC-
T ss_pred ccCCHH-HHHHHHHCC---CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CH-H----HHHHHHHHHHHHHcc-
Confidence 998877 466666533 455666666556789999999999999985321100 01 1 124455655554321
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002882 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (871)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 547 (871)
....+....+..|+.+..+.+-. +..+....++..++.++...+.-++..|++.+..+..-
T Consensus 204 ------------------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 204 ------------------SDTDVLADACWALSYLSDGPNDK-IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTSSSHHH-HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred ------------------CCHHHHHHHHHHHHHHHCCCcHH-HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 12356667788888887755433 34566778899999999988888999999999998765
Q ss_pred chhHHHHHHHhcCChHHHHHHHHH
Q 002882 548 HDEHLINHFVKNNLLKPIVDAFVA 571 (871)
Q Consensus 548 ~Defy~ryiIk~nLf~PIl~~f~~ 571 (871)
.++ ..+.++..+++.+++.++..
T Consensus 265 ~~~-~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 265 DDI-QTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp CHH-HHHHHHTTTHHHHHHHHTTC
T ss_pred ChH-HHHHHHHCccHHHHHHHHcC
Confidence 554 56678888999888887753
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.27 E-value=0.059 Score=61.23 Aligned_cols=241 Identities=14% Similarity=0.129 Sum_probs=153.1
Q ss_pred HHHHHHHHhCCCCCc---HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHH
Q 002882 309 FIQELFARLRSPTTL---EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILI 385 (871)
Q Consensus 309 FL~eLF~~l~~~~~~---~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~ 385 (871)
.+.-|...+.+++.+ ..-.+.+...|..+|.-....... ..-.|+++++...|.+++..++..++-.|.
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL--------DAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH--------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH--------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 355666667665433 233455555555554422222211 112467888889999999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHH
Q 002882 386 LFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVIT 465 (871)
Q Consensus 386 ~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~ 465 (871)
.+.++.+..... +... -.+..|++.| ...+..++.....+|..|.-.. ...+..++ +.. .+.+|.
T Consensus 258 ~L~~~~~~~~~~-i~~~---g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~---~~~~~~i~----~~g---~l~~L~ 322 (510)
T 3ul1_B 258 YLTDGPNERIEM-VVKK---GVVPQLVKLL-GATELPIVTPALRAIGNIVTGT---DEQTQKVI----DAG---ALAVFP 322 (510)
T ss_dssp HHTSSCHHHHHH-HHTT---TCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSC---HHHHHHHH----HTT---GGGGCC
T ss_pred HHhhchhhhHHH-HHhc---ccchhhhhhh-cCCChhhhhHHHHHHHHhhcCC---HHHHHHHh----hcc---chHHHH
Confidence 999988775433 3332 2444555544 5567788877777777764221 11111111 111 111111
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
.. ....+..+....|-.|+-+...... .+..+...+++..++.++++.+.-++-.|...+.++.
T Consensus 323 ~L---------------L~~~~~~v~~~A~~aL~nl~a~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 323 SL---------------LTNPKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp -C---------------TTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HH---------------hcCCCHHHHHHHHHHHHHHHcCcHH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11 0112344555666677766654443 4556778899999999999999999999999999998
Q ss_pred cCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002882 546 SRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (871)
Q Consensus 546 ~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir 591 (871)
.-.+.-..+||++.+.+.|+++++.. .|.=+-..+|+.++.|-
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~---~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSA---KDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 87777788999999999999998743 33445556777766664
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.16 E-value=0.063 Score=53.16 Aligned_cols=202 Identities=14% Similarity=0.100 Sum_probs=140.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
..++.|...+.+++ .+-|..++..|..++.-. + ..-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 44 g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 44 GGVEVLVKLLTSTD--SEVQKEAARALANIASGP----D----EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSC----H----HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCC----h----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46888888888754 566777777766654321 1 2234567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002882 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (871)
Q Consensus 388 ie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~ 466 (871)
..++|.. +..+.+. -.+..|++. +.+.++.++.....+|..|.... + .....+. ...++.|+.-|..
T Consensus 114 ~~~~~~~-~~~~~~~---~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 114 ASGPDEA-IKAIVDA---GGVEVLVKL-LTSTDSEVQKEAARALANIASGP----D---EAIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp TTSCHHH-HHHHHHT---THHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTHHHHHHHHTTC
T ss_pred HcCCHHH-HHHHHHC---CCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCC----H---HHHHHHHHCcCHHHHHHHHCC
Confidence 9888875 4444442 245566654 45678899999999999886431 1 1112223 3345555554421
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002882 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (871)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 546 (871)
..+.+....+..|+-+...+ ...+..+...+++..++.+++..+.-++-.|++.++++..
T Consensus 182 -------------------~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 182 -------------------TDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 12345556677777766643 3445677888899999999999999999999999999887
Q ss_pred CchhH
Q 002882 547 RHDEH 551 (871)
Q Consensus 547 l~Def 551 (871)
.....
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 65543
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.16 E-value=0.086 Score=59.26 Aligned_cols=234 Identities=14% Similarity=0.123 Sum_probs=161.1
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002882 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (871)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ii 388 (871)
.++.|...+.+++ +..-|..++..|..++.-. ...-..+++.|.++.+-..|.+++..+|..|+-.|..|.
T Consensus 118 ~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~--------~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 118 VVPRFVQFLTRED-FPQLQFEAAWALTNIASGT--------SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp CHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC--------HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3555555555432 2456667776666665421 123345678899999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002882 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (871)
Q Consensus 389 e~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~ 468 (871)
..+|. .|..+.... .+..|+..|-.+.+..++...+.+|..|....... +. .....+++.|+.-|..
T Consensus 189 ~~~~~-~~~~i~~~g---~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~---~~----~~~~~~l~~L~~lL~~-- 255 (528)
T 4b8j_A 189 GDSPK-CRDLVLANG---ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP---SF----EQTRPALPALARLIHS-- 255 (528)
T ss_dssp HTCHH-HHHHHHHTT---CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC---CH----HHHTTHHHHHHHHTTC--
T ss_pred CCChh-hHHHHHHCC---cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC---cH----HHHHHHHHHHHHHHCC--
Confidence 87776 466666543 45556666656778999999999999998754211 11 1124455555554321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002882 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (871)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~ 548 (871)
....+....|..|+.++.....++. .++...++..++.++...+.-++..|++.+..+..-.
T Consensus 256 -----------------~~~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 256 -----------------NDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTSSCHHHHH-HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC
Confidence 1345667788888888876655443 4566789999999999988899999999999988755
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHH
Q 002882 549 DEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (871)
Q Consensus 549 Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~L 584 (871)
+ .....+++.+++.+++.++... ....+...||.
T Consensus 318 ~-~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~A~~ 351 (528)
T 4b8j_A 318 D-AQTQCIIDHQALPCLLSLLTQN-LKKSIKKEACW 351 (528)
T ss_dssp H-HHHHHHHTTTHHHHHHHHHHSC-CCHHHHHHHHH
T ss_pred H-HHHHHHHHhhhHHHHHHHHcCC-CcHHHHHHHHH
Confidence 4 4666788999999999888532 13334444443
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.11 E-value=0.25 Score=55.41 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=160.3
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHH-cCCCcchhhhhhHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILIL 386 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L-~~~d~~ir~~atDIL~~ 386 (871)
..++-|...+.++ +.+-|..++..|..+|.-. +. .-..++..|.++.+-..| .+.+..++..++..|..
T Consensus 160 g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~----~~----~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 160 GAVPIFVKLLGSS--SDDVREQAVWALGNVAGDS----PK----CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp THHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTC----HH----HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCC----hh----hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4577788888774 4567788888888776422 22 223456789999888888 67788899999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 002882 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 465 (871)
Q Consensus 387 iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~ 465 (871)
+....|......+ ...+..|++.| .+.++.++.....+|..|.+... .....+.+ ..++.|+.-|.
T Consensus 230 L~~~~~~~~~~~~-----~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 230 FCRGKPQPSFEQT-----RPALPALARLI-HSNDEEVLTDACWALSYLSDGTN-------DKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHCSSSCCCHHHH-----TTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCH-------HHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCCCCcHHHH-----HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCH-------HHHHHHHHcCHHHHHHHHHc
Confidence 9988654322211 23566666654 56788999999999998875421 12233333 45666665442
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhcc-chhhHHHHHHHHHHH
Q 002882 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR-EKYLVVAAVRFVRTI 544 (871)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~-~K~L~LaAlRF~R~i 544 (871)
. ..+.+....+..|+-++.... .....++..+++..++.++... +.-++..|++.+.++
T Consensus 297 ~-------------------~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 297 H-------------------PSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred C-------------------CChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 2 123445566777777776443 3445577788999999999988 889999999999998
Q ss_pred hcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002882 545 LSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (871)
Q Consensus 545 I~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~I 590 (871)
..- +.-...+++..+++.+++.++... ...+...|+.-|-.+.
T Consensus 357 ~~~-~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 357 TAG-NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNAT 399 (528)
T ss_dssp HTS-CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHH
T ss_pred HCC-CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 864 455677889999999999988653 2234444444333333
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.11 E-value=0.076 Score=59.94 Aligned_cols=237 Identities=12% Similarity=0.126 Sum_probs=158.4
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~ls-K~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ 386 (871)
..++.|...+.+ .+.+-++.++..|..+|.-. ...+ ..+..|+++.+-..|.+.+..++..++..|..
T Consensus 215 ~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~---------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 215 NAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD---------WSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp TCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC---------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCc---------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457777787776 34567788888888877543 1211 23457899999999999999999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHH
Q 002882 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVIT 465 (871)
Q Consensus 387 iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~ 465 (871)
+....+..+.. ++.. .++..|+..| .+.+..++.....+|..|..... .....+.+ ..++.|+.-|.
T Consensus 284 L~~~~~~~~~~-~~~~---~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 284 LSDGPQEAIQA-VIDV---RIPKRLVELL-SHESTLVQTPALRAVGNIVTGND-------LQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HHSSCHHHHHH-HHHT---TCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH-------HHHHHHHHTTHHHHHHHHTT
T ss_pred HhCCCHHHHHH-HHhc---CcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCH-------HHHHHHHHcchHHHHHHHHc
Confidence 99998876554 3332 2455666654 56788888888888888764221 12222332 34454444332
Q ss_pred hcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 466 ASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 466 ~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
. ....+-...|-.|+.+....+..++ .++..+++..++.++...+.-++-.|+..+..+.
T Consensus 352 ~-------------------~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 352 S-------------------PKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411 (530)
T ss_dssp C-------------------SCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred C-------------------CCHHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 0223444556666666654444444 4557789999999999888889999999999987
Q ss_pred cCchh--HHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002882 546 SRHDE--HLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (871)
Q Consensus 546 ~l~De--fy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~I 590 (871)
...+. -+.+++++.+++.+++.++... +.-+-.+++..+..|
T Consensus 412 ~~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIA---DNRIIEVTLDALENI 455 (530)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 65443 5778999999999999988542 223344445544443
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.92 E-value=0.086 Score=59.50 Aligned_cols=222 Identities=12% Similarity=0.093 Sum_probs=153.6
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002882 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (871)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ii 388 (871)
.++.|...+.++. +..-|..++..|..++... +. .-..++..|+++.+-..|.+++..+|..|+..|..+.
T Consensus 131 ~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~----~~----~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 131 VVPRLVEFMRENQ-PEMLQLEAAWALTNIASGT----SA----QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 201 (530)
T ss_dssp CHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCC----HH----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4555666665542 3456777777666655421 11 2245678999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002882 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (871)
Q Consensus 389 e~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~ 468 (871)
..+|. .|..+.... .+..|++.| .+.+..++...+.+|..|.....-. .. + ......++.|+.-|..
T Consensus 202 ~~~~~-~~~~~~~~~---~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~---~~-~--~~~~~~l~~L~~lL~~-- 268 (530)
T 1wa5_B 202 GDSTD-YRDYVLQCN---AMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQ---PD-W--SVVSQALPTLAKLIYS-- 268 (530)
T ss_dssp TTCHH-HHHHHHHTT---CHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSC---CC-H--HHHGGGHHHHHHHTTC--
T ss_pred CCCcc-chHHHHHcC---cHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCC---Cc-H--HHHHhHHHHHHHHHcC--
Confidence 88776 455555542 455555544 4578899999999999998643111 11 1 1224555665553311
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002882 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (871)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~ 548 (871)
....+....|..|+.++...+..+ ..++...++..++.++...+.-++..|++.+..+..-.
T Consensus 269 -----------------~d~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 269 -----------------MDTETLVDACWAISYLSDGPQEAI-QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHSSCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred -----------------CCHHHHHHHHHHHHHHhCCCHHHH-HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 124566778888888887655443 34566789999999999888899999999999987655
Q ss_pred hhHHHHHHHhcCChHHHHHHHHH
Q 002882 549 DEHLINHFVKNNLLKPIVDAFVA 571 (871)
Q Consensus 549 Defy~ryiIk~nLf~PIl~~f~~ 571 (871)
++ ..+.++..+++.+++.++..
T Consensus 331 ~~-~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 331 DL-QTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HH-HHHHHHHTTHHHHHHHHTTC
T ss_pred HH-HHHHHHHcchHHHHHHHHcC
Confidence 54 55667888999998887753
No 21
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=96.84 E-value=0.0042 Score=59.33 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=72.4
Q ss_pred CeeEEEEeC-CCCCceeccceE-----EEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccc
Q 002882 15 QRVKVYRLN-DDGKWDDQGTGH-----VTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYST 88 (871)
Q Consensus 15 rRVKVY~L~-~~~~W~D~GTG~-----~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 88 (871)
-|++||... +.+.|...|+|- |++-......-..|+-+...+...+++..|.++-.|.+--.+..+|.+.+ .
T Consensus 9 ~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~w~~~~--~ 86 (130)
T 1qc6_A 9 ARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQWRDAR--Q 86 (130)
T ss_dssp EEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEEEECSS--C
T ss_pred EEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEEEEcCC--E
Confidence 589999995 356899999982 33222222223444445547888999999999999999999999999885 7
Q ss_pred cccccccCccchhHHHHHHHHHhhcc
Q 002882 89 ELALSFQEPTGCSYIWDNICNVQRNL 114 (871)
Q Consensus 89 DlALSFQe~~GC~~IW~~I~~VQ~~~ 114 (871)
=++|+|++.+-+...-+.+.+.....
T Consensus 87 ~~GL~F~se~eA~~F~~~~~~al~~~ 112 (130)
T 1qc6_A 87 VYGLNFASKEEATTFSNAMLFALNIM 112 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 88999999999888877777665543
No 22
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.57 E-value=0.3 Score=47.49 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=133.0
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002882 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (871)
Q Consensus 311 ~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~ 390 (871)
+-|...+.++ +.+-|..++..|..++.-. . ..-..+++.|.++.+-..|.+++..++..|+-.|..+..+
T Consensus 15 ~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~----~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 15 PQMVQQLNSP--DQQELQSALRKLSQIASGG----N----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (210)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHTSC----H----HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHcCC----H----HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 3344445543 4577788888887766322 1 2234577889999999999999999999999999999988
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcCC
Q 002882 391 DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASCP 469 (871)
Q Consensus 391 dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~~~p 469 (871)
++.. +..+++.. .+..|++.| .+.++.++.....+|..|.... + .....+. ...++.|++-|..
T Consensus 85 ~~~~-~~~i~~~g---~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~--- 149 (210)
T 4db6_A 85 GNEQ-IQAVIDAG---ALPALVQLL-SSPNEQILQEALWALSNIASGG----N---EQIQAVIDAGALPALVQLLSS--- 149 (210)
T ss_dssp CHHH-HHHHHHTT---CHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTHHHHHHHHTTC---
T ss_pred CcHH-HHHHHHCC---CHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCC----H---HHHHHHHHcCcHHHHHHHHcC---
Confidence 8874 44455443 344555544 5668999999999999986421 1 1122222 3345555554421
Q ss_pred CcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 470 QEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 470 ~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
....+....+..|+-++..++ ..+..+...+.+..+..++...+.-++-.|+.+++.+-
T Consensus 150 ----------------~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 150 ----------------PNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred ----------------CCHHHHHHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 123455667777777776433 34667888889999999999988899999999998764
No 23
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.54 E-value=0.078 Score=60.34 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=128.1
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc----CChhHHHHHHH
Q 002882 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLE 429 (871)
Q Consensus 354 ~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d----~d~glk~Ql~e 429 (871)
+.+++.|.++.+-..|.+++..++..|+-.|..|..++|. .|..+.+.... ..|+..|-.. ...++...++-
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i---~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAI---DPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCH---HHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCc---HHHHHHHhccchhHhHHHHHHHHHH
Confidence 3578899999999999999999999999999999988887 57777765443 2333333322 22345555666
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchh
Q 002882 430 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI 509 (871)
Q Consensus 430 aLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri 509 (871)
+|..|.-....... +. .-...++.|++-|. ...+++....|-.|+++..++..+.
T Consensus 232 ~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL~-------------------~~~~~v~~~a~~aL~~l~~~~~~~~ 286 (529)
T 3tpo_A 232 TLSNLCRNKNPAPP----LD--AVEQILPTLVRLLH-------------------HNDPEVLADSCWAISYLTDGPNERI 286 (529)
T ss_dssp HHHHHHCCCTTCCC----HH--HHHHHHHHHHHHTT-------------------SSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhcccchhh----HH--HHhhHHHHHHHHhc-------------------CCcHHHHHHHHHHHHHhhhhhhhhH
Confidence 66666532211110 00 11233444444221 1234567778888999887766554
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002882 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (871)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~ 570 (871)
..+....++.+++.|+.+.+..++..|+|.+.+++...| .....++..+.+.+++.++.
T Consensus 287 -~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL~ 345 (529)
T 3tpo_A 287 -EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLT 345 (529)
T ss_dssp -HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGHHHHTT
T ss_pred -HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch-HHHHHHhhcccHHHHHHHHc
Confidence 456778899999999999999999999999999886555 46788899999999887764
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.52 E-value=0.41 Score=51.75 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=135.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
..++-|...+.++ +.+-+..++..|..+|... + .....++..|+++.+-..|.+++..++..++..|..+
T Consensus 192 ~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~----~----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 192 PCLNVLSWLLFVS--DTDVLADACWALSYLSDGP----N----DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp GGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSS----H----HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCC----c----HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 4677777777654 3466777777777665421 1 1234567789999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002882 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (871)
Q Consensus 388 ie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~ 466 (871)
..+++...+ .+... -.+..|++.| .+.++.++.....+|..|.... ......+. ...++.|+.-|.+
T Consensus 262 ~~~~~~~~~-~~~~~---~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 262 VTGDDIQTQ-VILNC---SALQSLLHLL-SSPKESIKKEACWTISNITAGN-------RAQIQTVIDANIFPALISILQT 329 (450)
T ss_dssp TTSCHHHHH-HHHTT---THHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhCChHHHH-HHHHC---ccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHhc
Confidence 999887544 33332 3566666654 4568888888888888775311 11222233 2456666665543
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002882 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (871)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 546 (871)
. .+.+-...|-.|+-++.........+++..+++..++.++...+.-++..|+..+.+++.
T Consensus 330 ~-------------------~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 330 A-------------------EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp S-------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 123344556666666665433333445677899999999999888999999999999887
Q ss_pred Cchh
Q 002882 547 RHDE 550 (871)
Q Consensus 547 l~De 550 (871)
..+.
T Consensus 391 ~~~~ 394 (450)
T 2jdq_A 391 LGEQ 394 (450)
T ss_dssp HHHH
T ss_pred hchh
Confidence 5443
No 25
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.51 E-value=0.35 Score=48.28 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=136.5
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
..++.|...+.+++ .+-|..++..|..++.-. +. .-..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 54 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~----~~----~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 54 GALPALVQLLSSPN--EQILQEALWALSNIASGG----NE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp THHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSC----HH----HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCC----HH----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 56888888888765 567778887777665321 12 224567889999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHh
Q 002882 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITA 466 (871)
Q Consensus 388 ie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~ 466 (871)
...++.... .+... -.+..|++.| .+.+..++.....+|..|.... + .....+. ...++.|+.-|..
T Consensus 124 ~~~~~~~~~-~~~~~---~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~----~---~~~~~~~~~~~i~~L~~ll~~ 191 (252)
T 4db8_A 124 ASGGNEQIQ-AVIDA---GALPALVQLL-SSPNEQILQEALWALSNIASGG----N---EQIQAVIDAGALPALVQLLSS 191 (252)
T ss_dssp TTSCHHHHH-HHHHT---THHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC----H---HHHHHHHHTTCHHHHHHGGGC
T ss_pred hcCCchHHH-HHHHC---CCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC----h---HHHHHHHHCCCHHHHHHHHCC
Confidence 988876433 33332 2455666655 5678899999999999987432 1 1222222 3445555554321
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
..+.+....+..|+-++..++. .+..+...+++..++.+++..+.-++-.|++.+.++.
T Consensus 192 -------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 192 -------------------PNEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp -------------------SSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred -------------------CCHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 1234556677777777654443 4556778889999999999988889999988887653
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.40 E-value=0.32 Score=47.25 Aligned_cols=183 Identities=13% Similarity=0.088 Sum_probs=126.6
Q ss_pred HHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002882 355 DLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (871)
Q Consensus 355 ~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (871)
.....|.++.+...|.++|..++..|+-.|..+..+++...+ .+.+. -.+..|++.| .+.++.++.+...+|..|
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~---g~i~~L~~lL-~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQ-AVIDA---GALPALVQLL-SSPNEQILQEALWALSNI 81 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH-HHHHT---THHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHH-HHHHc---CCHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 344567889999999999999999999999999988887543 44443 2455566554 556889999988998888
Q ss_pred cCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHH
Q 002882 435 LDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF 513 (871)
Q Consensus 435 LDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~i 513 (871)
.... +.....+.+ ..++.|+.-|.+ ..+.+....+-.|+.+..+.+. .+..+
T Consensus 82 ~~~~-------~~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~~ 134 (210)
T 4db6_A 82 ASGG-------NEQIQAVIDAGALPALVQLLSS-------------------PNEQILQEALWALSNIASGGNE-QIQAV 134 (210)
T ss_dssp TTSC-------HHHHHHHHHTTCHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred hcCC-------cHHHHHHHHCCCHHHHHHHHcC-------------------CcHHHHHHHHHHHHHHHcCCHH-HHHHH
Confidence 5211 112233333 345666554422 1234445566666666664443 34456
Q ss_pred hhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHH
Q 002882 514 LLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFV 570 (871)
Q Consensus 514 l~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~ 570 (871)
+..+++..++.+++..+.-++..|+..+.++..-.++ ....+++.+.+.+++.++.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHGGG
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHh
Confidence 7888999999999998999999999999999875444 5678889999999998775
No 27
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=96.27 E-value=0.017 Score=53.83 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=73.7
Q ss_pred CCeeEEEEeCC-CCCceecc--ceE--EEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccc
Q 002882 14 MQRVKVYRLND-DGKWDDQG--TGH--VTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYST 88 (871)
Q Consensus 14 ~rRVKVY~L~~-~~~W~D~G--TG~--~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~ 88 (871)
.-|+.||..++ .+.|.-.| .|. |+..+........++.++-.+...+++..|.++-.|.+--.+...|.+.+ .
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~~~--~ 85 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRDAR--Q 85 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEEECSS--C
T ss_pred EEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeEecCC--E
Confidence 35889999954 45899999 677 43333222334555556667889999999999999999999999999986 6
Q ss_pred cccccccCccchhHHHHHHHHH
Q 002882 89 ELALSFQEPTGCSYIWDNICNV 110 (871)
Q Consensus 89 DlALSFQe~~GC~~IW~~I~~V 110 (871)
=++|.||..+-+....+.+.+.
T Consensus 86 ~~GLnF~se~eA~~F~~~v~~a 107 (112)
T 1evh_A 86 VYGLNFGSKEDANVFASAMMHA 107 (112)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHH
Confidence 7899999999988877666554
No 28
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=96.26 E-value=0.015 Score=55.05 Aligned_cols=99 Identities=15% Similarity=0.281 Sum_probs=74.8
Q ss_pred CCeeEEEEeCCC--CCcee--ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccc
Q 002882 14 MQRVKVYRLNDD--GKWDD--QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTE 89 (871)
Q Consensus 14 ~rRVKVY~L~~~--~~W~D--~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~D 89 (871)
.-|++||.-++. +.|.. .|.|-|+..+. ..... +-|.+-.+...+++..|.++-.|.+.-.+.-.|.+...+.=
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d-~~~~~-yRIv~~~~~~vv~n~~i~~~l~y~~a~p~FhqW~d~~~~~~ 85 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYD-STRNV-YRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTV 85 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCSSCEEEEEEEE-TTTTE-EEEEEEETTEEEEEEECCTTCCCEECSSSEEEEEETTTTEE
T ss_pred EEEEEEEEEcCCCCCceEeCCCCceEEEEEEc-CCCCE-EEEEEccCCEEEEeCEecCCcEEeeCCccccEEEcCCCcEE
Confidence 358999999763 48999 55555544432 22333 33334557889999999999999999999999999986788
Q ss_pred ccccccCccchhHHHHHHHHHhhcc
Q 002882 90 LALSFQEPTGCSYIWDNICNVQRNL 114 (871)
Q Consensus 90 lALSFQe~~GC~~IW~~I~~VQ~~~ 114 (871)
++|.||.++-+...-+.|..++..+
T Consensus 86 ~GLnF~s~~eA~~F~~~~~~~~~~l 110 (120)
T 1ddw_A 86 YGLGFSSEHHLSKFAEKFQEFKEAA 110 (120)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777776665443
No 29
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=96.17 E-value=0.02 Score=53.67 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=75.2
Q ss_pred CCeeEEEEeCC-CCCceeccc---eE--EEEEEeCCCcceeEEEEecC-CCcceeEeecCCCCccccccCeEEEecCCCc
Q 002882 14 MQRVKVYRLND-DGKWDDQGT---GH--VTVDSMERSEELCLFVIDEE-DNETILLHRISPDDIYRKQEDTIISWRDPEY 86 (871)
Q Consensus 14 ~rRVKVY~L~~-~~~W~D~GT---G~--~s~~~~e~~~~~~L~V~sE~-d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~ 86 (871)
.-||.||.-++ .+.|.-.|+ |. |...+........++.++-. +...+++..|.++-.|.+.-.+.-.|.+.+
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~w~~~~- 86 (115)
T 1egx_A 8 SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDAR- 86 (115)
T ss_dssp EEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEEEESSS-
T ss_pred EEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceEEecCC-
Confidence 45889999854 456999998 55 44444333344566667766 888999999999999999999999999986
Q ss_pred cccccccccCccchhHHHHHHHHHh
Q 002882 87 STELALSFQEPTGCSYIWDNICNVQ 111 (871)
Q Consensus 87 g~DlALSFQe~~GC~~IW~~I~~VQ 111 (871)
.=++|.||..+-+....+.+.+.-
T Consensus 87 -~~~GLnF~se~eA~~F~~~v~~al 110 (115)
T 1egx_A 87 -QVWGLNFGSKEDAAQFAAGMASAL 110 (115)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -EEEEEecCCHHHHHHHHHHHHHHH
Confidence 678999999999988777766543
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.98 E-value=1.8 Score=47.82 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=154.6
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
..++.|...+++++ ..-+..++..|..+|.-..+. | ..+++.|.++.+-..|.+++..++..++..|..+
T Consensus 101 g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~----~----~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 101 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGA----K----MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp THHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTH----H----HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcch----H----HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46777888787654 567888888888887653221 2 2456789999999999999999999999999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002882 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (871)
Q Consensus 388 ie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 467 (871)
...++.. +..+.... -+..|++.|-......++.....+|+.|-.... .+..++ +. ..+.+|...
T Consensus 171 a~~~~~~-~~~i~~~~---~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~----~~---g~~~~L~~l 235 (529)
T 1jdh_A 171 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIV----EA---GGMQALGLH 235 (529)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHH----HT---THHHHHHTT
T ss_pred HhCCHHH-HHHHHHCC---CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHH----HC---CCHHHHHHH
Confidence 7777663 44444432 255666666555566666677778887764221 222222 22 133444432
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002882 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (871)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 547 (871)
.. .....+..+.+..|+.+.+..+.. .....++..++.++++.+.-++..|++.+..+..-
T Consensus 236 l~---------------~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 236 LT---------------DPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TT---------------SSCHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred Hh---------------CCChHHHHHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 11 012344555666666666554322 22357888899999999999999999999998553
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHH
Q 002882 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELF 587 (871)
Q Consensus 548 ~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELf 587 (871)
+.-....+++.+.+.+++.++....+...+...|+.-|-
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 444667788999999999999876655555555554443
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.75 E-value=0.24 Score=56.24 Aligned_cols=185 Identities=16% Similarity=0.202 Sum_probs=125.4
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc----CChhHHHHHHH
Q 002882 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD----FGEDMHCQFLE 429 (871)
Q Consensus 354 ~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d----~d~glk~Ql~e 429 (871)
+.+++.|.++.+-..|++++..++..|+-.|..|..++|. .|..+.+..... .|+..|-.. ...++...+.-
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v~~~G~i~---~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAID---PLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHH---HHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCChH---HHHHHHHhccchhhhHHHHHHHHH
Confidence 3568899999999999999999999999999999988887 577776654332 333333321 22345555666
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchh
Q 002882 430 ILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI 509 (871)
Q Consensus 430 aLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri 509 (871)
+|..+.-....... +. .-...++.|++-|. ....++....|-.|+++..+...++
T Consensus 213 ~L~nl~~~~~~~~~----~~--~~~~~lp~L~~LL~-------------------~~~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 213 TLSNLCRNKNPAPP----LD--AVEQILPTLVRLLH-------------------HNDPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp HHHHHHCCCSSCCC----HH--HHHHHHHHHHHHTT-------------------CSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHhhcccchhH----HH--HHHhHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHhhchhhhH
Confidence 66666532221110 10 11233344443221 1234566778888888887766654
Q ss_pred hhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHH
Q 002882 510 KCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAF 569 (871)
Q Consensus 510 K~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f 569 (871)
+ .+....++.+++.|+.+.+.-++..|+|.+.++....|+ ....++..+.+.+++.++
T Consensus 268 ~-~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~-~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 268 E-MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp H-HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGCC-CT
T ss_pred H-HHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH-HHHHHhhccchHHHHHHh
Confidence 3 466778999999999999999999999999998866554 678889999998877655
No 32
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=95.69 E-value=0.052 Score=54.12 Aligned_cols=104 Identities=14% Similarity=0.268 Sum_probs=77.8
Q ss_pred CCCCCCCCeeEEEEeCCC--CCcee--ccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecC
Q 002882 8 QANANPMQRVKVYRLNDD--GKWDD--QGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRD 83 (871)
Q Consensus 8 ~~~~~~~rRVKVY~L~~~--~~W~D--~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte 83 (871)
-..+--.-||.||..++. ..|.- .|.|.|++.+ +..... +-|.+-.+...+++..|.++-.|.+.-.+.-.|.+
T Consensus 7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~-d~~rns-yRIvg~~d~kvvinc~I~~~l~Y~kasp~FHqW~d 84 (168)
T 1i2h_A 7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFY-DSTRNV-YRIISLDGSKAIINSTITPNMTFTKTSQKFGQWAD 84 (168)
T ss_dssp SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEE-ETTTTE-EEEEEEETTEEEEEEECCTTCCEEEEETTEEEEEE
T ss_pred cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEE-cCCCCE-EEEEEccCCEEEEecEecCCcEEeeCCcccceeec
Confidence 334455679999999763 37999 5666554443 323333 33334557889999999999999999999999999
Q ss_pred CCccccccccccCccchhHHHHHHHHHhhc
Q 002882 84 PEYSTELALSFQEPTGCSYIWDNICNVQRN 113 (871)
Q Consensus 84 ~~~g~DlALSFQe~~GC~~IW~~I~~VQ~~ 113 (871)
...+.=++|.||.++-+...-+.|..++..
T Consensus 85 ~~~~~v~GLnF~Se~eA~~F~~~~~~ale~ 114 (168)
T 1i2h_A 85 SRANTVYGLGFSSEHHLSKFAEKFQEFKEA 114 (168)
T ss_dssp TTTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 876788999999999998877777666543
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.67 E-value=0.91 Score=52.74 Aligned_cols=237 Identities=15% Similarity=0.126 Sum_probs=146.0
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002882 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (871)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ii 388 (871)
.++.|...+.++ +..-++.++..|..+|.-..... ...|+++.+-..|.+.+..++..++-+|..+.
T Consensus 225 ~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~-----------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 225 GMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE-----------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp HHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCC-----------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhh-----------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 566666666654 45667778888887765432211 11267888888899999999999999999999
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCC-hhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002882 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFG-EDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (871)
Q Consensus 389 e~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d-~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 467 (871)
.+++.. |..+.+.. .+..|++.|....+ ..++.....+|..|.....-....+..++ -...++.|++-|...
T Consensus 292 ~~~~~~-~~~v~~~g---~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~---~~~~l~~L~~lL~~~ 364 (644)
T 2z6h_A 292 CNNYKN-KMMVCQVG---GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR---LHYGLPVVVKLLHPP 364 (644)
T ss_dssp TTCHHH-HHHHHHTT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH---HTTHHHHHHHTTSTT
T ss_pred cCCHHH-HHHHHHcC---CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HccChHHHHHHhCcc
Confidence 888763 55555432 55667777765443 78888888899888532111000011111 122344443322110
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhcc------------------
Q 002882 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRR------------------ 529 (871)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~------------------ 529 (871)
....+....|..|+-+...-..+ ..++..+++..++.++...
T Consensus 365 ------------------~~~~v~~~a~~~L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~ 424 (644)
T 2z6h_A 365 ------------------SHWPLIKATVGLIRNLALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424 (644)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHHHHHHHTTC----------C
T ss_pred ------------------CchHHHHHHHHHHHHHccCHHHH--HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhc
Confidence 01233344555555555543333 5677888888888887653
Q ss_pred ----chhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 002882 530 ----EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEY 589 (871)
Q Consensus 530 ----~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~ 589 (871)
...++.+|++.++++.. +.-....+.+.+.+.|+++++.. ...|+...|+--|-..
T Consensus 425 ~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 425 EGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCEL 484 (644)
T ss_dssp CSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 23466788999988764 33445567799999999998853 3345666666544443
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.42 E-value=2.7 Score=48.81 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=157.0
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
..++.|...+.+++ ..-+..++.-|..+|.-.. . ....+++.|.++.+-..|++.+..++..+++.|..+
T Consensus 98 g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~----~----~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 98 GGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQE----G----AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp THHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHST----T----HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcc----h----hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 56788888887653 5678888888888776431 1 223466889999999999999888888899999888
Q ss_pred HhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhc
Q 002882 388 LNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITAS 467 (871)
Q Consensus 388 ie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~ 467 (871)
...++.. |..+.... .+..|++.|-......++.....+|+.|-... ..+..++ +.. .+.+|...
T Consensus 168 a~~~~~~-~~~i~~~g---~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~----~~~~~l~----~~g---~l~~L~~l 232 (644)
T 2z6h_A 168 AYGNQES-KLIILASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS----SNKPAIV----EAG---GMQALGLH 232 (644)
T ss_dssp HTTCHHH-HHHHHHTT---HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT----THHHHHH----HTT---HHHHHHTT
T ss_pred HhcCcHH-HHHHHHcC---ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc----ccHHHHH----HCC---CHHHHHHH
Confidence 8666653 44454433 35566766655555666777788888886422 1233332 221 23344332
Q ss_pred CCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002882 468 CPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (871)
Q Consensus 468 ~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 547 (871)
.. .....+....+..|.-+.++.+. ......++..++.++++.+.-++..|...+..+..-
T Consensus 233 l~---------------~~~~~~~~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 233 LT---------------DPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TT---------------CSCHHHHHHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred Hh---------------cCCHHHHHHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11 01234555666677666655432 123347888899999999988999999999988653
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHH
Q 002882 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFE 588 (871)
Q Consensus 548 ~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe 588 (871)
+.-....+++.+.+.+++.++...+++..+...|+.-|-.
T Consensus 294 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 294 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 4446778889999999999998776655666655554443
No 35
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.18 E-value=3.3 Score=49.48 Aligned_cols=210 Identities=15% Similarity=0.182 Sum_probs=111.0
Q ss_pred HHhhCCHHHHHHHHHHhCC-CCCcHHhHHHHHHHHHHHHHh-hhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhh
Q 002882 301 SLLKDDSTFIQELFARLRS-PTTLEESKKNLVHFLHEFCGL-SKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVL 378 (871)
Q Consensus 301 ~~Lq~d~~FL~eLF~~l~~-~~~~~e~rrd~v~FL~E~c~l-sK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~ 378 (871)
+.++.++.|..-|...+.. .+.+..-|.-+...|+..+.- -..+.+..|..+-..|++ +|.++++.+|.
T Consensus 38 ~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~---------~l~~~~~~vr~ 108 (852)
T 4fdd_A 38 EQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN---------NIGDSSPLIRA 108 (852)
T ss_dssp HHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHT---------TTTCSSHHHHH
T ss_pred HHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH---------HHcCCCHHHHH
Confidence 3455667776666666654 344556666666677765531 123444444433222222 13455555666
Q ss_pred hhhHHHHHHHhcC-----hHHHHHHHH--hcCC---------------------------cchHHHHHHHHh---ccCCh
Q 002882 379 TGTDILILFLNQD-----PNLLRSYVV--RQEG---------------------------IPLLGLLVKGMI---TDFGE 421 (871)
Q Consensus 379 ~atDIL~~iie~d-----P~lvR~~i~--~qe~---------------------------~~Ll~~Li~~ll---~d~d~ 421 (871)
.+++++..|+.++ |.++-..+- ..++ ...+..++..|+ .+.++
T Consensus 109 ~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 188 (852)
T 4fdd_A 109 TVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188 (852)
T ss_dssp HHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH
Confidence 6655555555443 222211100 0000 011223333332 46677
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHH
Q 002882 422 DMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFC 501 (871)
Q Consensus 422 glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fc 501 (871)
.++...+.+|..++.... . . +...++.++..|..... ...+.+-...|+.|.-.
T Consensus 189 ~vR~~A~~aL~~~~~~~~--~----~-----~~~~~~~~l~~l~~~~~---------------d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 189 KIRSHAVACVNQFIISRT--Q----A-----LMLHIDSFIENLFALAG---------------DEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHHHHHHHHTTTTTTC--H----H-----HHTSHHHHHHHHHHHHT---------------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--H----H-----HHHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHH
Confidence 777777777766654311 0 0 11223334444443210 01234455677778877
Q ss_pred HhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002882 502 VLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (871)
Q Consensus 502 v~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 547 (871)
+..++..++.|+ +.++.-++.++...+.-++..|+.|+.++...
T Consensus 243 ~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 243 LEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 877776666653 35777788888888889999999999987654
No 36
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.01 E-value=4 Score=48.75 Aligned_cols=218 Identities=11% Similarity=0.132 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhc---------------------c---ChHhHHHHHHHHHh---
Q 002882 306 DSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKS---------------------L---QMVQQLRLFRDLMN--- 358 (871)
Q Consensus 306 d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~---------------------L---Q~~~r~~lf~~Lv~--- 358 (871)
-+++++.|+..+.+++ ...|.-++..|..+|.-... + .+.-|..-.+.|..
T Consensus 126 wp~ll~~L~~~l~~~~--~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSED--YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp CTTHHHHHHHHHSCSS--HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3568888888887654 34566666666666643211 0 11223333333321
Q ss_pred ----------cCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHH
Q 002882 359 ----------EGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFL 428 (871)
Q Consensus 359 ----------~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~ 428 (871)
.++++.+-..+.+++..+|..++..|..+++..|..++.|+- .++..+++. +.+.++.++.+.+
T Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-----~l~~~l~~~-~~~~~~~vr~~a~ 277 (852)
T 4fdd_A 204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-----NIVEYMLQR-TQDQDENVALEAC 277 (852)
T ss_dssp TTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-----HHHHHHHHH-HTCSSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-----HHHHHHHHH-ccCCcHHHHHHHH
Confidence 134555556677888889999999999999988887776542 266666654 4567899999999
Q ss_pred HHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC-------------CCcccccccC-CCCcccCCcHHHHHHH
Q 002882 429 EILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC-------------PQEGIAQSAS-SGGRVESTKPEILSNI 494 (871)
Q Consensus 429 eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~-------------p~e~~~~~~~-~~~~~~~~~~~ll~~l 494 (871)
+.+..+.+...+ + .+ ...++..|+..++... +.+....+.. ....++......+..+
T Consensus 278 e~l~~l~~~~~~----~-~~----~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 278 EFWLTLAEQPIC----K-DV----LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp HHHHHHTTSTTH----H-HH----HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcchhH----H-HH----HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence 999998765421 1 12 2334444444443321 0010000000 1111221122223333
Q ss_pred HHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHH
Q 002882 495 CELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHL 552 (871)
Q Consensus 495 ~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy 552 (871)
.+ .... .+ ...++..+..++...+-..+-+|++.+.++..--.+.+
T Consensus 349 a~----~~~~-------~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 349 AN----VYRD-------EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp HH----HHGG-------GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HH----hccH-------HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 32 2221 12 23466777777888888889999999999886655443
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.59 E-value=7.7 Score=46.51 Aligned_cols=257 Identities=12% Similarity=0.112 Sum_probs=145.8
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHH
Q 002882 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDIL 384 (871)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL 384 (871)
+.+..+..|...+++.. +.+-|+.++..|..++. . ...+ ..+++.|.++.+-..|++.+..++..|+..|
T Consensus 189 ~~~~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~---~--~~~~----~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL 258 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSH---H--REGL----LAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258 (780)
T ss_dssp TCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHT---S--HHHH----HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hccChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC---C--chhH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44567888888886442 56778888888887443 2 1222 3456779999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 002882 385 ILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 464 (871)
Q Consensus 385 ~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL 464 (871)
..|...++.. |..+.+.. .+..|++.| .+.+..++....++|+.|.-.. ...+..+.. ...++.|++-|
T Consensus 259 ~nLa~~~~~~-~~~v~~~g---~v~~Lv~lL-~~~~~~v~~~a~~aL~~La~~~---~e~~~~i~~---~~~i~~Lv~lL 327 (780)
T 2z6g_A 259 HNLLLHQEGA-KMAVRLAG---GLQKMVALL-NKTNVKFLAITTDCLQILAYGN---QESKLIILA---SGGPQALVNIM 327 (780)
T ss_dssp HHHHHHSTTH-HHHHHHTT---HHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTC---HHHHHHHHT---TTHHHHHHHHH
T ss_pred HHHhCCChhh-HHHHHHcC---CHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCC---hHHHHHHHH---cCCHHHHHHHH
Confidence 9998887663 44443322 455566655 3466777777778888775211 011222221 13455555544
Q ss_pred HhcCCCcccccccC----CCCcccCCcHHHH-HHHHHHHHHHHhhccchhhh---------------HHhhhhHHHHHHH
Q 002882 465 TASCPQEGIAQSAS----SGGRVESTKPEIL-SNICELLCFCVLHHPYRIKC---------------NFLLNNVVDKVLL 524 (871)
Q Consensus 465 ~~~~p~e~~~~~~~----~~~~~~~~~~~ll-~~l~ELL~Fcv~~H~yriK~---------------~il~~nll~rVl~ 524 (871)
....+ +....... .-.........+. ..++..|.-++.......+. ......++..++.
T Consensus 328 ~~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 328 RTYTY-EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 406 (780)
T ss_dssp TTCCC-HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH
T ss_pred hcCCH-HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Confidence 22110 00000000 0000000001110 11122222222222211110 1112346677778
Q ss_pred hhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHH
Q 002882 525 LTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVL 584 (871)
Q Consensus 525 Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~L 584 (871)
++++.+.-++..|++.+..+..-.+ -..+.+++.+.+.+++.++...++...+...|+.
T Consensus 407 lL~~~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 407 LLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 8888888888999999998865444 4567788899999999999876554444444443
No 38
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=94.38 E-value=0.21 Score=47.62 Aligned_cols=95 Identities=19% Similarity=0.313 Sum_probs=73.1
Q ss_pred CCeeEEEEeCC-CCCceeccceEE---EEEEe----CCC-cceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCC
Q 002882 14 MQRVKVYRLND-DGKWDDQGTGHV---TVDSM----ERS-EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDP 84 (871)
Q Consensus 14 ~rRVKVY~L~~-~~~W~D~GTG~~---s~~~~----e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~ 84 (871)
.-||-||.-++ .+.|.-.|.|-+ ++-++ +.. ....|+.+.-.+...+++..|.++-.|.+---+.-.|.+.
T Consensus 17 ~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~FH~w~~~ 96 (126)
T 2jp2_A 17 RVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVD 96 (126)
T ss_dssp EEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETTEEEEECS
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCcceEEEcC
Confidence 45888888854 567999998863 33333 222 3345555665688899999999999999999999999998
Q ss_pred CccccccccccCccchhHHHHHHHHH
Q 002882 85 EYSTELALSFQEPTGCSYIWDNICNV 110 (871)
Q Consensus 85 ~~g~DlALSFQe~~GC~~IW~~I~~V 110 (871)
+ .=++|.|+..+-+....+.+.+.
T Consensus 97 ~--~~~GLnF~se~eA~~F~~~v~~a 120 (126)
T 2jp2_A 97 N--RKFGLTFQSPADARAFDRGVRKA 120 (126)
T ss_dssp S--SEEEEEESSHHHHHHHHHHHHHH
T ss_pred C--EEEEEecCCHHHHHHHHHHHHHH
Confidence 6 44999999999998877766554
No 39
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.04 E-value=1.7 Score=48.05 Aligned_cols=184 Identities=11% Similarity=0.119 Sum_probs=125.8
Q ss_pred HHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 356 LMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 356 Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
.+..|.++.+-..|++++..+|..|+..|..+..+++. |..++.. .-.+..|++.|-...++.++.....+|+.|-
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~--~~~~~~~--~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--RHAIMRS--PQMVSAIVRTMQNTNDVETARCTAGTLHNLS 88 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH--HHHHHTC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc--HHHHHhC--cchHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999887764 3334332 1245667777766668888888888998874
Q ss_pred CCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHh
Q 002882 436 DSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL 514 (871)
Q Consensus 436 Dp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il 514 (871)
... +....+.+ ..++.|++-|.+ ..+.+....+..|..+...+.. .+..+.
T Consensus 89 ~~~--------~~~~~i~~~g~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~-~~~~i~ 140 (529)
T 1jdh_A 89 HHR--------EGLLAIFKSGGIPALVKMLGS-------------------PVDSVLFYAITTLHNLLLHQEG-AKMAVR 140 (529)
T ss_dssp TSH--------HHHHHHHHTTHHHHHHHHTTC-------------------SCHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred cCc--------hhHHHHHHcCCHHHHHHHHcC-------------------CCHHHHHHHHHHHHHHhcCCcc-hHHHHH
Confidence 321 12222333 345655554321 1234556667777777666543 356677
Q ss_pred hhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHh
Q 002882 515 LNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVAN 572 (871)
Q Consensus 515 ~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~n 572 (871)
..+.+..++.+++..+.-++-.|.+.++.+.. .++-....+++.+.+.+++.++...
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~-~~~~~~~~i~~~~~i~~L~~ll~~~ 197 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 197 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHHhC
Confidence 78899999999998877777788888886654 4455677888889999999987654
No 40
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=93.69 E-value=0.24 Score=46.56 Aligned_cols=97 Identities=23% Similarity=0.348 Sum_probs=73.2
Q ss_pred CCCeeEEEEeCC-CCCceeccceEEE---EEEe----CCC-cceeEEEEecCCCcceeEeecCCCCccccccCeEEEecC
Q 002882 13 PMQRVKVYRLND-DGKWDDQGTGHVT---VDSM----ERS-EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRD 83 (871)
Q Consensus 13 ~~rRVKVY~L~~-~~~W~D~GTG~~s---~~~~----e~~-~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte 83 (871)
..-|+.||.-++ ...|.-.|.|-++ +-+. +.. ....|+.+.-.+...+++..|.++-.|.+.-.+.-.|.+
T Consensus 7 ~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w~~ 86 (118)
T 1xod_A 7 ARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTFHHWRI 86 (118)
T ss_dssp EEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEE
T ss_pred EEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcceEEEe
Confidence 345888888854 6789999988643 2232 122 234455555568889999999999999999999999999
Q ss_pred CCccccccccccCccchhHHHHHHHHHh
Q 002882 84 PEYSTELALSFQEPTGCSYIWDNICNVQ 111 (871)
Q Consensus 84 ~~~g~DlALSFQe~~GC~~IW~~I~~VQ 111 (871)
.+ .=++|.|+..+-+....+.+.+.-
T Consensus 87 ~~--~~~GL~F~se~eA~~F~~~v~~al 112 (118)
T 1xod_A 87 GD--KKFGLTFQSPADARAFDRGIRRAI 112 (118)
T ss_dssp TT--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--EEEEEecCCHHHHHHHHHHHHHHH
Confidence 85 559999999999998877776654
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.69 E-value=4.8 Score=48.29 Aligned_cols=212 Identities=12% Similarity=0.152 Sum_probs=132.3
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
+..+...+.+++ .+.|+.++.+|+- ..+ ..+..|.++.+-..|.+++..+|..|+..|..+..
T Consensus 117 i~~lv~~L~~~~--~~~r~~a~~~l~~----------~~~-----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 117 HPTNVQRLAEPS--QMLKHAVVNLINY----------QDD-----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp ---------CCS--CHHHHHHHHHHHH----------HHH-----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcc--HHHHHHHHHHHHh----------hhH-----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC
Confidence 555666666654 3556666655541 122 23457889999899999999999999999999888
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHH-hhHHHHHHHHHhcC
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYE-KHLGQLIDVITASC 468 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~-~~~~~L~~pL~~~~ 468 (871)
+++. +..+.. ..-.+..|++.|-.+.++.++...+.+|+.|--.. .....+.+ ..++.|+.-|.+
T Consensus 180 ~~~~--~~~i~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~--------~~~~~i~~~g~I~~Lv~lL~~-- 245 (780)
T 2z6g_A 180 KEAS--RHAIMR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR--------EGLLAIFKSGGIPALVNMLGS-- 245 (780)
T ss_dssp SHHH--HHHHTT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--------HHHHHHHHTTHHHHHHHHTTC--
T ss_pred CChh--HHHHHh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--------hhHHHHHHcCCHHHHHHHHcC--
Confidence 7654 222322 22367778888877778889888888888864221 11222222 345555544321
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002882 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (871)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~ 548 (871)
..+.+....+..|..+...+. ..+..+...+++..++.+++..+.-++-.|+.+++.+. ..
T Consensus 246 -----------------~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La-~~ 306 (780)
T 2z6g_A 246 -----------------PVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA-YG 306 (780)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH-TT
T ss_pred -----------------CCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-cC
Confidence 123444566666666666543 34566777889999999998877666667777887544 44
Q ss_pred hhHHHHHHHhcCChHHHHHHHHH
Q 002882 549 DEHLINHFVKNNLLKPIVDAFVA 571 (871)
Q Consensus 549 Defy~ryiIk~nLf~PIl~~f~~ 571 (871)
++-....++..+.+.+++.++..
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCHHHHHHHHhc
Confidence 44456677888889999987753
No 42
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.63 E-value=1.2 Score=46.94 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=103.6
Q ss_pred hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCC
Q 002882 358 NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDS 437 (871)
Q Consensus 358 ~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp 437 (871)
..+.+.++...|.+.|..++..+.=+|=-++..=|..+|.-+++. +|.-+|+.+ .+.|..+..-.+.+|++||..
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~----~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER----HLDVFINAL-SQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH----HHHHHHHTC-CSTTHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH----HHHHHHHHH-hccchhHHHHHHHHHHHHHcC
Confidence 445677788888888888888777777667766555555544432 667777655 788999999999999999998
Q ss_pred CCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhh
Q 002882 438 YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN 517 (871)
Q Consensus 438 ~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n 517 (871)
.+++. ++..++.+.|.+... ....-+..++.|.|.=. |---....
T Consensus 106 vpL~~------------~~y~Kl~~aL~dlik---------------~~~~il~~eaae~Lgkl--------kv~~~~~~ 150 (265)
T 3b2a_A 106 VPMGS------------KTFLKAAKTLVSLLE---------------SPDDMMRIETIDVLSKL--------QPLEDSKL 150 (265)
T ss_dssp CCBCH------------HHHHHHHHHHHHHTT---------------SCCHHHHHHHHHHHHHC--------CBSCCCHH
T ss_pred CCCCH------------HHHHHHHHHHHHHhc---------------CCCchHHHHHHHHhCcC--------CcccchHH
Confidence 88753 223344444544211 01223445666766654 11112344
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCc
Q 002882 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRH 548 (871)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~ 548 (871)
+...+..|+.+++..++.+|+|++..+-+.-
T Consensus 151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 7778889999999999999999999998754
No 43
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.38 E-value=1.3 Score=52.37 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=119.3
Q ss_pred HHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 002882 354 RDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRS 433 (871)
Q Consensus 354 ~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~ 433 (871)
.++.+..++++|+. |++++...|..|+-.|..+++ ||++.+- +.++ -.+..++..+++|.+..++.+...+||.
T Consensus 29 ~~~~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~-~~~~~~l-~~~~---~~v~~ll~~lL~D~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 29 AKLREDKILPVLKD-LKSPDAKSRTTAAGAIANIVQ-DAKCRKL-LLRE---QVVHIVLTETLTDNNIDSRAAGWEILKV 102 (684)
T ss_dssp HHHHHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTT-SHHHHHH-HHHT---THHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHc-CcHHHHH-HHHc---CCHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35667789999987 899999999999999999995 8986544 4442 2555667778899999999999999999
Q ss_pred hcCCCCCCchhhhHHHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCcccCCc----HHHHHHHHHHHHHHHhhccch
Q 002882 434 LLDSYTLSGAQRDTIIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTK----PEILSNICELLCFCVLHHPYR 508 (871)
Q Consensus 434 LLDp~~m~~~e~d~fL~~FY~~~-~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~----~~ll~~l~ELL~Fcv~~H~yr 508 (871)
|---+ ..+++.+.|.+. +.-|..-|-... +................ ..+..+++-+|.... +++-.
T Consensus 103 L~~~~------g~d~~~~l~~~~il~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~-e~s~~ 173 (684)
T 4gmo_A 103 LAQEE------EADFCVHLYRLDVLTAIEHAAKAVL--ETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLA-LARDE 173 (684)
T ss_dssp HHHHS------CHHHHHHHHHTTHHHHHHHHHHHHH--HHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHH-HHCHH
T ss_pred HHhhc------CchHHHHHHHcChHHHHHHHHHhhH--HHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHH-hCCHH
Confidence 85222 224556666553 333333222100 00000000000000000 112345555554433 45555
Q ss_pred hhhHHhhhhHHHHHHHhhhccch---hhHHHHHHHHHHHhcCchhHHHHHHHhcC
Q 002882 509 IKCNFLLNNVVDKVLLLTRRREK---YLVVAAVRFVRTILSRHDEHLINHFVKNN 560 (871)
Q Consensus 509 iK~~il~~nll~rVl~Ll~~~~K---~L~LaAlRF~R~iI~l~Defy~ryiIk~n 560 (871)
+...|...+.+..++.++...++ -++.+|+.|+.++..-+++|. +.+..+.
T Consensus 174 ~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~-~~i~~~~ 227 (684)
T 4gmo_A 174 IHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVG-QAITDDQ 227 (684)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHH-HHHHTCC
T ss_pred HHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHH-HHHHhcc
Confidence 55667778888888877654443 488999999999988888764 4555544
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.94 E-value=8.8 Score=41.19 Aligned_cols=210 Identities=8% Similarity=0.072 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh------------hhccChHhHHHHHHHHHh----------------
Q 002882 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKSLQMVQQLRLFRDLMN---------------- 358 (871)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~l------------sK~LQ~~~r~~lf~~Lv~---------------- 358 (871)
+.|+..|+.++.+.+.+..-|.-+...|+.+..- -..+....|..+-..|+.
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i 113 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHH
Confidence 5677777777776555566676666677776521 122444444333222211
Q ss_pred -------------cCcHHHHHHHHcCC--CcchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccC-Ch
Q 002882 359 -------------EGIFDIVTDALQSQ--DKKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDF-GE 421 (871)
Q Consensus 359 -------------~GLl~vi~~~L~~~--d~~ir~~atDIL~~iie~d-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~-d~ 421 (871)
.++++.+-..+.++ +..+|..|..+|..+.+.- |..+..+ -..++..+...|-.+. ++
T Consensus 114 ~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-----~~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 114 AGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-----SNEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-----HHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-----HHHHHHHHHHHhCCCCCCH
Confidence 12445454555555 5556666666665555432 3221111 1134555555443332 67
Q ss_pred hHHHHHHHHHHHhcCCCCCCch-hhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHH
Q 002882 422 DMHCQFLEILRSLLDSYTLSGA-QRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF 500 (871)
Q Consensus 422 glk~Ql~eaLk~LLDp~~m~~~-e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~F 500 (871)
.++.....++..++.- +... ....+. +.++..|..... .....+-..+|+.|.-
T Consensus 189 ~vr~~a~~~l~~~~~~--~~~~~~~~~~~--------~~l~~~l~~~~~---------------~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 189 NVKLAATNALLNSLEF--TKANFDKESER--------HFIMQVVCEATQ---------------CPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHHHHTTT--THHHHTSHHHH--------HHHHHHHHHHTT---------------CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhhHHH--------HHHHHHHHHhcC---------------CCCHHHHHHHHHHHHH
Confidence 7887777777776632 1000 000111 112222222100 0123455677888888
Q ss_pred HHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002882 501 CVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (871)
Q Consensus 501 cv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 547 (871)
++..++..++.|+-. .++.-++..++..+.-++..|+.|+.++...
T Consensus 244 l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 888887766665432 6777777777878888999999999888654
No 45
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=92.68 E-value=0.52 Score=47.05 Aligned_cols=95 Identities=12% Similarity=0.263 Sum_probs=77.6
Q ss_pred eEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccccccccC
Q 002882 17 VKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQE 96 (871)
Q Consensus 17 VKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe 96 (871)
|.||.-..++.|.-.++|-+.....-......|-+.+-.++..+.+..|-.+=.|++......+|... +.=++|+|.+
T Consensus 65 aqLy~a~~~~~W~~~~~Gal~~vkD~~~rsyf~RlvDl~~~~vvweqELY~~f~Y~~~r~~FHtFe~d--~c~~GLnFad 142 (169)
T 2ifs_A 65 VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD--TCQVALNFAN 142 (169)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEEETTTCCCCEEEECCSSCCCBCCCSSEEEEECS--SSEEEEECSC
T ss_pred EEEEEECCCCeeEecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEeecC--CcEEEEeeCC
Confidence 78999965679999999987665432234566778888888899999999999999999999999764 4679999999
Q ss_pred ccchhHHHHHHHHHhhc
Q 002882 97 PTGCSYIWDNICNVQRN 113 (871)
Q Consensus 97 ~~GC~~IW~~I~~VQ~~ 113 (871)
.+-+......|.+-..+
T Consensus 143 e~EA~~F~~~V~~~l~~ 159 (169)
T 2ifs_A 143 EEEAKKFRKAVTDLLGR 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888776543
No 46
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=92.61 E-value=8.4 Score=46.94 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-------------hcc-------ChHhHHHHH----HHHHhcC
Q 002882 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-------------KSL-------QMVQQLRLF----RDLMNEG 360 (871)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~ls-------------K~L-------Q~~~r~~lf----~~Lv~~G 360 (871)
.+..+++.|+..+++++. .-.+.+..-|..++.-. +.. .+-....+- +.+++.|
T Consensus 418 ~d~g~Ip~LV~LL~s~d~--~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 418 EDKASIHALMDLARGGNQ--SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HCHHHHHHHHHHHHTTCG--GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HccchHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 356799999999886543 34556665555555411 000 111222233 5788999
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC
Q 002882 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 440 (871)
Q Consensus 361 Ll~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 440 (871)
.++.+-..|.++++.++..|+-+|..|.. |+. .|..++++...+ .|+.+| .+.+...+.+...||-.|.-..+
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~-~r~~Vv~~Gaip---~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~- 568 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCG-LKE-LRGKVVQEGGVK---ALLRMA-LEGTEKGKRHATQALARIGITIN- 568 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHH-HHHHHHHTTHHH---HHHHHH-HSSCHHHHHHHHHHHHHHHHHSC-
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHH-HHHHHHHCCCHH---HHHHHH-ccCCHHHHHHHHHHHHHHhcCCC-
Confidence 99999999999999999999999999984 555 688888875433 334444 34456667778888877652111
Q ss_pred CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHH
Q 002882 441 SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVD 520 (871)
Q Consensus 441 ~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~ 520 (871)
++ ..|+...+...+.||........ ........+--|+.+.... -..+..++....+.
T Consensus 569 --p~-----~~~~~~~~~~aIppLv~LL~~~~--------------~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~ 626 (810)
T 3now_A 569 --PE-----VSFSGQRSLDVIRPLLNLLQQDC--------------TALENFESLMALTNLASMN-ESVRQRIIKEQGVS 626 (810)
T ss_dssp --HH-----HHTTTHHHHHTHHHHHHTTSTTS--------------CHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHH
T ss_pred --hh-----hhhcchhhhcHHHHHHHHhCCCC--------------cHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Confidence 11 11221111224566655421100 0001112344555555443 23455688888999
Q ss_pred HHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHH
Q 002882 521 KVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVA 571 (871)
Q Consensus 521 rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ 571 (871)
++..|+.+.+..++-.|++++.+++.- ++...+++...+.+.+++.++..
T Consensus 627 ~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 627 KIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcC
Confidence 999999999999999999999999864 44444444236888888876643
No 47
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=92.60 E-value=0.53 Score=46.22 Aligned_cols=95 Identities=12% Similarity=0.263 Sum_probs=77.5
Q ss_pred eEEEEeCCCCCceeccceEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccccccccC
Q 002882 17 VKVYRLNDDGKWDDQGTGHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELALSFQE 96 (871)
Q Consensus 17 VKVY~L~~~~~W~D~GTG~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlALSFQe 96 (871)
|.||.-..++.|.-.++|-+.....-......|-+.+-.++..+.+..|-.+=.|++......+|... +.-++|+|.+
T Consensus 48 aqLy~a~~~~~W~~~~~Gal~~VkD~~~rsyf~RlvDl~~~~viweqELY~~f~Y~~~r~~FHtFe~d--~c~~GLnFad 125 (152)
T 1mke_A 48 VQLYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD--TCQVALNFAN 125 (152)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCSSSSEEEEECS--SSEEEEEESS
T ss_pred EEEEEECCCCceEecCceEEEEEEECCCCeEEEEEEEccCCeEEEEeecccceeeccCCCeEEEEecC--CcEEEEeeCC
Confidence 78999865679999999987665433234566778888888889999999999999999999999764 4669999999
Q ss_pred ccchhHHHHHHHHHhhc
Q 002882 97 PTGCSYIWDNICNVQRN 113 (871)
Q Consensus 97 ~~GC~~IW~~I~~VQ~~ 113 (871)
.+-+......|.+-..+
T Consensus 126 e~EA~~F~~~V~~~l~~ 142 (152)
T 1mke_A 126 EEEAKKFRKAVTDLLGR 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888776543
No 48
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.58 E-value=3.8 Score=44.08 Aligned_cols=210 Identities=13% Similarity=0.112 Sum_probs=118.9
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK-~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ 386 (871)
.+++-+...+.+++.+..-|..++.-|..++.+.+ +.... .+..+ +++++...+.+++..+|..++.+|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~~~----l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SERHF----IMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH----HHHHH----HHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 35556666677665456777878877766554332 11111 12222 46666667788899999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC-------------CCc-hhhhHHHHHH
Q 002882 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT-------------LSG-AQRDTIIEIF 452 (871)
Q Consensus 387 iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~-------------m~~-~e~d~fL~~F 452 (871)
+++..|..++.|+.+ .++..++..+ .+.+..++.+.++.+..+.+... ... ...-.++.-+
T Consensus 244 l~~~~~~~~~~~~~~----~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 244 IMSLYYQYMETYMGP----ALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHCGGGCTTTTTT----THHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 999988766654421 4666555544 67888999898888877764320 000 0011233333
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchh
Q 002882 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (871)
Q Consensus 453 Y~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 532 (871)
....++.|++-+... .+. .. .....++ ...++.|..++..-+ + . +...++..+..+++..+-.
T Consensus 319 ~~~l~p~l~~~l~~~--d~d--~~-~~~~~~r-------~~a~~~L~~l~~~~~---~-~-~~~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQ--DEN--DD-DDDWNPC-------KAAGVCLMLLATCCE---D-D-IVPHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp HHHHHHHHHHHTTCC--CSS--CC-TTCCSHH-------HHHHHHHHHHHHHTT---T-T-HHHHHHHHHHHHTTCSSHH
T ss_pred hhhccHHHHHHHHhc--ccc--cc-cccchHH-------HHHHHHHHHHHHhcc---H-H-HHHHHHHHHHHHhcCCChH
Confidence 344444444433221 000 00 0111121 122333333333322 1 1 1235667777788888888
Q ss_pred hHHHHHHHHHHHhcC
Q 002882 533 LVVAAVRFVRTILSR 547 (871)
Q Consensus 533 L~LaAlRF~R~iI~l 547 (871)
.+-+|+.++..+..-
T Consensus 382 ~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 382 YRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 49
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.33 E-value=6.7 Score=41.80 Aligned_cols=183 Identities=10% Similarity=0.123 Sum_probs=120.5
Q ss_pred hhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHh
Q 002882 376 LVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK 455 (871)
Q Consensus 376 ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~ 455 (871)
-|..|.++|..+++...+ -+. +.+..+ +..|+..++...++.++.+.+.+|..+..... ..++.+++. .
T Consensus 56 ~k~~Al~~L~~lv~~~dn-a~~-~~~~G~---l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~---~~~~~vv~~---g 124 (296)
T 1xqr_A 56 EREGALELLADLCENMDN-AAD-FCQLSG---MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA---AIQEQVLGL---G 124 (296)
T ss_dssp HHHHHHHHHHHHHTSHHH-HHH-HHHTTH---HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHhChhh-HHH-HHHcCC---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHC---C
Confidence 467788999999885443 333 233322 23456645677899999999999998864321 123333321 4
Q ss_pred hHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHH
Q 002882 456 HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVV 535 (871)
Q Consensus 456 ~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~L 535 (871)
.++.|+.-|... + +..+....+--|+-++++++..... |...+.+.-++.++++.+.-++.
T Consensus 125 ~l~~Ll~LL~~~-~-----------------~~~v~~~A~~ALsnl~~~~~~~~~~-~~~~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 125 ALRKLLRLLDRD-A-----------------CDTVRVKALFAISCLVREQEAGLLQ-FLRLDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHHHHHHHHHHC-S-----------------CHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHccC-C-----------------CHHHHHHHHHHHHHHHcCCcHHHHH-HHHCCCHHHHHHHHcCCCHHHHH
Confidence 567777655431 0 2234456677778788877765554 44567888888999999999999
Q ss_pred HHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002882 536 AAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (871)
Q Consensus 536 aAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~ 592 (871)
.|+..+..+..-. .-..+++++.+.+.|++.++... +.=+--.++..+..|-+
T Consensus 186 ~A~~aLs~L~~~~-~~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 186 KSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-hHHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHh
Confidence 9999999987654 44788999999999999987533 33334444444444443
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.30 E-value=6 Score=39.69 Aligned_cols=193 Identities=9% Similarity=0.146 Sum_probs=122.0
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHc-CCCcchhhhhhHHHHHHHhcC
Q 002882 313 LFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQ-SQDKKLVLTGTDILILFLNQD 391 (871)
Q Consensus 313 LF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~-~~d~~ir~~atDIL~~iie~d 391 (871)
++..+.+ .+-..|+.++.-|..++.-...+.... |. .+++++...|. +.+..+|..|+..+..+...=
T Consensus 20 l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~----~~-----~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 20 FYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGE----YG-----ALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp HHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCC----CH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCC----HH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 5555554 345788899988888877532221111 11 34566777884 999999999999998887422
Q ss_pred hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCc
Q 002882 392 PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE 471 (871)
Q Consensus 392 P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e 471 (871)
...+..|+ ..++..|++. +.|....++....++|..++...+ ++..++.|+.-|..
T Consensus 89 ~~~~~~~~-----~~ilp~ll~~-l~d~~~~vr~~a~~aL~~~~~~~~-------------~~~ll~~l~~~l~~----- 144 (242)
T 2qk2_A 89 AKRFSNYA-----SACVPSLLEK-FKEKKPNVVTALREAIDAIYASTS-------------LEAQQESIVESLSN----- 144 (242)
T ss_dssp GGGGHHHH-----HHHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTSC-------------HHHHHHHHHHHTTC-----
T ss_pred hhhHHHHH-----HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHcC-----
Confidence 11122222 2255555554 357888999999999999976422 23334444332211
Q ss_pred ccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccch--hhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc-Cc
Q 002882 472 GIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYR--IKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS-RH 548 (871)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yr--iK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~-l~ 548 (871)
..+.+-..++.+|.-|+..|.-. ...++ ..++..+..++.-.+.-++-+|..++-.+.. ..
T Consensus 145 --------------~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 145 --------------KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp --------------SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred --------------CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 13345567788888888887422 23333 4688888889988888899999998888642 34
Q ss_pred hhHHHHHH
Q 002882 549 DEHLINHF 556 (871)
Q Consensus 549 Defy~ryi 556 (871)
.+.+..|+
T Consensus 209 ~~~~~~~l 216 (242)
T 2qk2_A 209 DKAVTPLL 216 (242)
T ss_dssp HHHHGGGG
T ss_pred HHHHHHHH
Confidence 44454444
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.71 E-value=12 Score=43.89 Aligned_cols=242 Identities=12% Similarity=0.055 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh------------hhc-cChHhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 002882 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL------------SKS-LQMVQQLRLFRDLMNEGIFDIVTDALQSQD 373 (871)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~l------------sK~-LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d 373 (871)
+.|+.-|..++.+.+.+..-|.-+...|+.++.. -.. +....|..+-..| -.+|.+++
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~l---------l~~l~~~~ 108 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNA---------LTALVSIE 108 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHH---------HHHHTCSS
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHH---------HHHHCCCc
Confidence 7888888888887666666677777777765421 011 3333443333222 22467788
Q ss_pred cchhhhhhHHHHHHHhcC-hHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 002882 374 KKLVLTGTDILILFLNQD-PNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIF 452 (871)
Q Consensus 374 ~~ir~~atDIL~~iie~d-P~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~F 452 (871)
..+|..++.+|..|..++ |. ..-..++..|++.+-.+.++.++...+.+|..+++.-. ...+ .
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~--------~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~--~~~~------~ 172 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPH--------GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD--PQSQ------A 172 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG--------TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS--TTSS------T
T ss_pred hHHHHHHHHHHHHHHHhhCcc--------cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC--hhhh------H
Confidence 889999999998887765 31 11124666666665443377777777778877775321 0011 0
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchh
Q 002882 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (871)
Q Consensus 453 Y~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 532 (871)
...+++.++..+....... . ....+-...++.|+-|+..=...+......+.++.-+..++...+.-
T Consensus 173 ~~~~~~~ll~~l~~~l~~~----~---------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 173 LVSSSNNILIAIVQGAQST----E---------TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp TGGGHHHHHHHHHHHHSTT----C---------CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHHhhcCC----C---------CCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH
Confidence 1223344444443321000 0 01223334445555443210000000001122444455566777778
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002882 533 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (871)
Q Consensus 533 L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~I 590 (871)
++.+|++++..++....+++..|+.+ .++..++..+ .+.+.-+-.++++++..+
T Consensus 240 ~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~~~~---~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATM---KSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHT---TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---cCCcHHHHHHHHHHHHHH
Confidence 88899999999887766655555543 4444444333 234445556666666544
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.36 E-value=23 Score=41.04 Aligned_cols=211 Identities=12% Similarity=0.131 Sum_probs=117.6
Q ss_pred CcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC
Q 002882 360 GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (871)
Q Consensus 360 GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 439 (871)
.+++.|...|.+.++.+|..|+--+..+...+|.+++.+ +.. +..++.|.|++++.....+|..+....
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~---------~~~-l~~lL~D~d~~V~~~Al~~L~~i~~~~- 210 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMF---------LPA-TKNLLNEKNHGVLHTSVVLLTEMCERS- 210 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGG---------GGG-TTTSTTCCCHHHHHHHHHHHHHHCCSH-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHH---------HHH-HHHHhCCCCHhHHHHHHHHHHHHHHhC-
Confidence 457888889999999999999999999999999877542 222 233568899999988888888875321
Q ss_pred CCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCccc-CCcHHHHHHHHHHHHHHHhhccchhhh---H---
Q 002882 440 LSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHPYRIKC---N--- 512 (871)
Q Consensus 440 m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~-~~~~~ll~~l~ELL~Fcv~~H~yriK~---~--- 512 (871)
+ +. .-.|.++++.|++-|...+.... .+...+. ...+.+...++++|....+..+.-.+. +
T Consensus 211 ---~---~~-~~~~~~~v~~l~~~L~~~~~~~~-----~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~ 278 (618)
T 1w63_A 211 ---P---DM-LAHFRKLVPQLVRILKNLIMSGY-----SPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQ 278 (618)
T ss_dssp ---H---HH-HHHHHTTHHHHHHHHHHHHHSCC-----CTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHH
T ss_pred ---h---HH-HHHHHHHHHHHHHHHHHHHcCCC-----CccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1 12 23456777877776654210000 0000011 124555666777777666543221000 0
Q ss_pred Hh------------------------------hhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHH-----
Q 002882 513 FL------------------------------LNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFV----- 557 (871)
Q Consensus 513 il------------------------------~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiI----- 557 (871)
++ ....+..+..++.+++.-++.+||+-+..++..+-+.+.+|..
T Consensus 279 l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~ 358 (618)
T 1w63_A 279 VATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDC 358 (618)
T ss_dssp HHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHG
T ss_pred HHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 00 0012233445566667777777777777776553332222211
Q ss_pred -hc-C--ChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhC
Q 002882 558 -KN-N--LLKPIVDAFVANGNRYNLLNSAVLELFEYIRKEN 594 (871)
Q Consensus 558 -k~-n--Lf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~eN 594 (871)
.. + +=.--++++..-.+..|+ ..-+-||.+|+...+
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~nv-~~iv~eL~~~l~~~d 398 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNNI-RGMMKELLYFLDSCE 398 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSST-HHHHHHHHHHHHHCC
T ss_pred ccCCChhHHHHHHHHHHHHcccccH-HHHHHHHHHHHHhCC
Confidence 00 0 000113444455555663 455667777766533
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.31 E-value=27 Score=40.95 Aligned_cols=230 Identities=12% Similarity=0.119 Sum_probs=127.2
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~ls-K~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ 386 (871)
.+++-+...+.+++.+.+-|..++.-|..++... .++... .++ ..+++++...+.+++..+|..+++.|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~----~~il~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE----SER----HFIMQVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSH----HHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhH----HHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4555566666766545667777777777665432 122111 111 1256677777788889999999999999
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC------------ch--hhhHHHHHH
Q 002882 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS------------GA--QRDTIIEIF 452 (871)
Q Consensus 387 iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~------------~~--e~d~fL~~F 452 (871)
++...|..+..++. ..++..++..+ .+.++.++.+..+.+..+.+..... .+ ....++.-.
T Consensus 244 l~~~~~~~~~~~~~----~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 244 IMSLYYQYMETYMG----PALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHSGGGCHHHHT----TTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHhHHHHHHHHH----HHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 99999988777663 24666666654 5677888888888888776432000 00 001223222
Q ss_pred HHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchh
Q 002882 453 YEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKY 532 (871)
Q Consensus 453 Y~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~ 532 (871)
+ ..++.+++....... .........++......+..+++ +... .+ ...++..+...+...+-.
T Consensus 319 ~----~~ll~~ll~~l~~~~-~d~~~~~~~~r~~a~~~l~~l~~----~~~~-------~~-~~~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 319 L----QYLVPILTQTLTKQD-ENDDDDDWNPCKAAGVCLMLLAT----CCED-------DI-VPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp H----HHHHHHHHHHTTCCC-SSCCTTCCCHHHHHHHHHHHHHH----HHGG-------GG-HHHHHHHHHHHTTCSSHH
T ss_pred H----HHHhHHHHHHhhccc-ccccccccHHHHHHHHHHHHHHH----HCcH-------hh-HHHHHHHHHHHccCCChH
Confidence 3 334444433211110 00000111222111122222222 2221 11 234666666777778888
Q ss_pred hHHHHHHHHHHHhcCch-hHHHHHHHhcCChHHHHHHH
Q 002882 533 LVVAAVRFVRTILSRHD-EHLINHFVKNNLLKPIVDAF 569 (871)
Q Consensus 533 L~LaAlRF~R~iI~l~D-efy~ryiIk~nLf~PIl~~f 569 (871)
.+-+|++.+..+..--. +.+..|+ ..++..++..+
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l 417 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHh
Confidence 89999999998775433 4444554 23566666665
No 54
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=91.30 E-value=6.7 Score=47.78 Aligned_cols=200 Identities=8% Similarity=0.066 Sum_probs=121.3
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002882 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (871)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ii 388 (871)
.++-|...+.+ +.+...+.+++.=|..++..+ . ..=..+++.|.++.|...|.+.+..++..|++.|..++
T Consensus 581 aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~----d----~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 581 VIRPLLNLLQQ-DCTALENFESLMALTNLASMN----E----SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp THHHHHHTTST-TSCHHHHHHHHHHHHHHTTSC----H----HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCC----H----HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45556665542 223334445554444333321 1 12223677898999999999999999999999999888
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcC
Q 002882 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASC 468 (871)
Q Consensus 389 e~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~ 468 (871)
.++. ....++ ++.--+..|+..+ ...+.+++....-+|..|
T Consensus 652 ~~~~-~~~~~v---~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanL---------------------------------- 692 (810)
T 3now_A 652 MSED-VIKMFE---GNNDRVKFLALLC-EDEDEETATACAGALAII---------------------------------- 692 (810)
T ss_dssp TSHH-HHHHHH---SSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHH----------------------------------
T ss_pred CChH-HHHHHH---hccCcHHHHHHHh-cCCCHHHHHHHHHHHHHH----------------------------------
Confidence 7544 333332 1222333333322 233444444333333222
Q ss_pred CCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhh-hhHHHHHHHhhhccchhhHHHHHHHHHHHhcC
Q 002882 469 PQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL-NNVVDKVLLLTRRREKYLVVAAVRFVRTILSR 547 (871)
Q Consensus 469 p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~-~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l 547 (871)
...++--++ .++. .+.+..+..|+.+.+--++-.|+..+.+++.-
T Consensus 693 ---------------------------------t~~s~~~~~-~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 693 ---------------------------------TSVSVKCCE-KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp ---------------------------------HHHCHHHHH-HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------hCCCHHHHH-HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 111111122 3444 67778888888888888899999999999875
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 002882 548 HDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIR 591 (871)
Q Consensus 548 ~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir 591 (871)
.++ +.++|++.+.+.|+.+++.....+++=+--.+++-++-|-
T Consensus 739 s~e-~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 739 GEE-IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp CHH-HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 554 6899999999999998886654466655555555555443
No 55
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.02 E-value=9.2 Score=41.71 Aligned_cols=212 Identities=12% Similarity=0.057 Sum_probs=135.5
Q ss_pred cHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc-ChHHHHHHH
Q 002882 323 LEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYV 399 (871)
Q Consensus 323 ~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv--~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~-dP~lvR~~i 399 (871)
+.+-++.+..-|..+|.-. .. .+..+ ..|.++.+-..|.+++..++..|+-.|..+... ++. .|..+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~----~~-----~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i 166 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGD----VA-----NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTL 166 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSC----HH-----HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC----HH-----HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHH
Confidence 3456777777777665321 11 23333 468899999999999999999999999888875 444 46666
Q ss_pred HhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCC
Q 002882 400 VRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASS 479 (871)
Q Consensus 400 ~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~ 479 (871)
.+.. -+..|++.|....+.+++.....+|..|--- ....|..+.. -...++.|++-|....+.
T Consensus 167 ~~~G---~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~---~~~nk~~i~~--~~Gai~~Lv~lL~~~~~~--------- 229 (354)
T 3nmw_A 167 REVG---SVKALMECALEVKKESTLKSVLSALWNLSAH---CTENKADICA--VDGALAFLVGTLTYRSQT--------- 229 (354)
T ss_dssp HHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT---CHHHHHHHHH--STTHHHHHHHHTTCCCSS---------
T ss_pred HHCC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---ChhhhHHHHH--hcCcHHHHHHHhccCCCc---------
Confidence 5433 3456677777767888888888888877320 1111222211 235667777766432110
Q ss_pred CCcccCCcHHHHHHHHHHHHHHH----hhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHH
Q 002882 480 GGRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINH 555 (871)
Q Consensus 480 ~~~~~~~~~~ll~~l~ELL~Fcv----~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ry 555 (871)
. ..++....+=.|..+. .... .+..+...+.+..++.||++...-++-.|++.++++... +.-....
T Consensus 230 -~-----~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~ 300 (354)
T 3nmw_A 230 -N-----TLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEA 300 (354)
T ss_dssp -S-----CCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHH
T ss_pred -c-----cHHHHHHHHHHHHHHHhhccCCHH--HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 0 0012222222222222 1222 345678888999999999988888999999999998754 4456788
Q ss_pred HHhcCChHHHHHHHH
Q 002882 556 FVKNNLLKPIVDAFV 570 (871)
Q Consensus 556 iIk~nLf~PIl~~f~ 570 (871)
|++.+.+.|+++++.
T Consensus 301 i~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIH 315 (354)
T ss_dssp HHHTTHHHHHHTTTT
T ss_pred HHHCCCHHHHHHHHh
Confidence 999999999998764
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.57 E-value=18 Score=41.94 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC
Q 002882 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 440 (871)
Q Consensus 362 l~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 440 (871)
.+.+...|.+.+..+|-.|.+.|..++.++|..+..+. .. +-..+.+.|..++....++|..|.+..|.
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~---------~~-i~~~l~d~d~~Ir~~alelL~~l~~~~nv 383 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR---------ST-IVDCLKDLDVSIKRRAMELSFALVNGNNI 383 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH---------HH-HHHGGGSSCHHHHHHHHHHHHHHCCSSST
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH---------HH-HHHHccCCChhHHHHHHHHHHHHcccccH
Confidence 34444457778888888888888888888887665432 12 22345788999999999999999888774
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=90.31 E-value=33 Score=40.17 Aligned_cols=206 Identities=11% Similarity=0.112 Sum_probs=114.4
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHHHHHHhcC----hHHHHHHHHhcCCcchHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Q 002882 361 IFDIVTDALQSQDKKLVLTGTDILILFLNQD----PNLLRSYVVRQEGIPLLGLLVKGMIT-DFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 361 Ll~vi~~~L~~~d~~ir~~atDIL~~iie~d----P~lvR~~i~~qe~~~Ll~~Li~~ll~-d~d~glk~Ql~eaLk~LL 435 (871)
+++.+-.+|+++ +.+|..++..|..+++.- +..+..|+ ..++..|++.+-. +.+..++..+.++|..|.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-----~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-----PALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-----HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 345555556665 778888888887776542 22222222 1345566665543 444788888999999887
Q ss_pred CCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhh
Q 002882 436 DSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLL 515 (871)
Q Consensus 436 Dp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~ 515 (871)
..... + ..-++...++.+++-|....+.+...... ..+.....+...+++.|..+++.-.-.+..| .
T Consensus 529 ~~~~~---~----~~~~~~~l~~~l~~~l~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~ 595 (861)
T 2bpt_A 529 EYATD---T----VAETSASISTFVMDKLGQTMSVDENQLTL----EDAQSLQELQSNILTVLAAVIRKSPSSVEPV--A 595 (861)
T ss_dssp HHCCG---G----GHHHHHHHHHHHHHHHHHHTTSCGGGCCH----HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG--H
T ss_pred HHcch---h----hHHHHHHHHHHHHHHHHHHHhhhcccCCh----hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--H
Confidence 54321 1 12234445555555554321110000000 0001123455678888888887766544443 3
Q ss_pred hhHHHHHHHhhhccch-hhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002882 516 NNVVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (871)
Q Consensus 516 ~nll~rVl~Ll~~~~K-~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~I 590 (871)
..++..++.+++..+. .++-.|+.++.+++..-.+-+..|+-+ ++.+++..+ +.+.++ +-.++++++..|
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l--~~~~~~-vr~~a~~~l~~l 666 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKAL--NQVDSP-VSITAVGFIADI 666 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHH--HCTTSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHh--ccccHH-HHHHHHHHHHHH
Confidence 4688888888887766 788888988888765433334455543 555666666 223333 444455555444
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.03 E-value=22 Score=41.75 Aligned_cols=240 Identities=12% Similarity=0.077 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh------------hccChHhHHHHHHHHHhcCcHHHHHHHHcCCCc
Q 002882 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS------------KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDK 374 (871)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~ls------------K~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~ 374 (871)
+.|+.-|+..+.+.+.+...|.-+...|+.++... ..+.+..|..+- ..+-.+|.+++.
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik---------~~ll~~l~~~~~ 104 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVK---------NYVLHTLGTETY 104 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHH---------HHHHHHTTTCCS
T ss_pred hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHH---------HHHHHHhCCCcH
Confidence 67888888888776666677777777888765210 123333333222 122234577788
Q ss_pred chhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccC-ChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH
Q 002882 375 KLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDF-GEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY 453 (871)
Q Consensus 375 ~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~-d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY 453 (871)
.+ ..++.++..+..++- ....-..++..|+..+-.+. ++.++...+.+|..++..-. ++ . +
T Consensus 105 ~~-~~~~~~l~~i~~~~~-------~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~---~----~ 166 (876)
T 1qgr_A 105 RP-SSASQCVAGIACAEI-------PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID---PE---Q----L 166 (876)
T ss_dssp SS-CHHHHHHHHHHHHHG-------GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC---HH---H----H
T ss_pred HH-HHHHHHHHHHHHhhC-------cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---Hh---h----H
Confidence 88 888899888876541 11122346677776654332 77787777788877764211 11 1 3
Q ss_pred HhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhh
Q 002882 454 EKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYL 533 (871)
Q Consensus 454 ~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L 533 (871)
..+++.++..+....... . . ...+-...++.|+-++..-.-.+......+.++.-+..++...+.-+
T Consensus 167 ~~~~~~ll~~l~~~l~~~----~--~-------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~v 233 (876)
T 1qgr_A 167 QDKSNEILTAIIQGMRKE----E--P-------SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (876)
T ss_dssp GGGHHHHHHHHHHHHSTT----C--S-------CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HhHHHHHHHHHHHhhcCC----C--C-------CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHH
Confidence 455566666555421100 0 0 11222234444444433211111111112234555556666667778
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002882 534 VVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (871)
Q Consensus 534 ~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~I 590 (871)
+.+|++++-.++...-.++..|+. ..++..++..+ .+.+--+-.++++++..+
T Consensus 234 r~~a~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~---~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 234 RVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAM---KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHH---TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHh---cCCchHHHHHHHHHHHHH
Confidence 889999999999876666666653 46676666544 233334444555555444
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=89.23 E-value=13 Score=45.07 Aligned_cols=263 Identities=10% Similarity=0.139 Sum_probs=148.7
Q ss_pred HHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccCh----------------H---------h---HHHH
Q 002882 301 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQM----------------V---------Q---QLRL 352 (871)
Q Consensus 301 ~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~----------------~---------~---r~~l 352 (871)
..|.+|..||..|+..++++.. ..--..++..|..|+....+++. + . ...-
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHH
Confidence 3466678899999999985221 12234444444444432222111 0 0 1112
Q ss_pred --HHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChh--HHHHHH
Q 002882 353 --FRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGED--MHCQFL 428 (871)
Q Consensus 353 --f~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~g--lk~Ql~ 428 (871)
-+.+++.|..+.+-..+++.++.+|..++-+|..+... +. .|..+++|.+ +..|+..+....+.+ .+....
T Consensus 448 ~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~-~R~~lvqqGa---l~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN-FIPQLAQQGA---VKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG-GHHHHHHTTH---HHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCC---HHHHHHHHhcCCCcchHHHHHHH
Confidence 24567999999999999999999999999999988744 55 4777887643 223333333332221 344444
Q ss_pred HHHHHhc-------------------------CC--CCCC--------ch--hh------------------hHHHHHHH
Q 002882 429 EILRSLL-------------------------DS--YTLS--------GA--QR------------------DTIIEIFY 453 (871)
Q Consensus 429 eaLk~LL-------------------------Dp--~~m~--------~~--e~------------------d~fL~~FY 453 (871)
.||-.|+ .+ ..-. .+ ++ ++.-...-
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 4444433 21 1000 00 00 00000001
Q ss_pred H--hhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchh-hhHHhhh-hH----HHHHHHh
Q 002882 454 E--KHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRI-KCNFLLN-NV----VDKVLLL 525 (871)
Q Consensus 454 ~--~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yri-K~~il~~-nl----l~rVl~L 525 (871)
. .+++.|...|.+ ....+....||++|-.+. ++--+ +.|+-.. .- +.-++.|
T Consensus 603 ~~~ga~~~L~~LL~s-------------------~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~L 662 (778)
T 3opb_A 603 STKVYWSTIENLMLD-------------------ENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKL 662 (778)
T ss_dssp HSHHHHHHHHHGGGC-------------------SSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHG
T ss_pred HhcCHHHHHHHHHhC-------------------CCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHH
Confidence 0 112222222111 122345567888888886 55543 3444322 22 4446678
Q ss_pred hhccchhhHHHHHHHHHHHhcCchhHHHHHHHhc-CChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002882 526 TRRREKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (871)
Q Consensus 526 l~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~-nLf~PIl~~f~~ng~R~NLLnSA~LELfe~I 590 (871)
+.+.+.-.+-+|.-.+-.+- ..++...+-|++. +.+++++.+|.+.-+..++...++.=|....
T Consensus 663 l~s~D~~~r~AAagALAnLt-s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 663 LQLSDVESQRAVAAIFANIA-TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp GGCSCHHHHHHHHHHHHHHH-HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhc-CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 88888889999988887763 3466677888876 7999999999886567778777766555554
No 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=88.56 E-value=18 Score=40.96 Aligned_cols=211 Identities=12% Similarity=0.064 Sum_probs=135.1
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHH--hcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc-ChHHHHHHHH
Q 002882 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLM--NEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ-DPNLLRSYVV 400 (871)
Q Consensus 324 ~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv--~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~-dP~lvR~~i~ 400 (871)
..-++++..-|..+|.-. ... +..+ ..|.++.+-..|.+++..++..|+-.|..+... ++. .|..+.
T Consensus 214 ~~l~~~Aa~aL~nLa~~~----~~~-----k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~I~ 283 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGD----VAN-----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLR 283 (458)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHH-----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC----ccc-----HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH-HHHHHH
Confidence 445777887777766421 112 2333 468899999999999999999999999888775 454 466665
Q ss_pred hcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCC
Q 002882 401 RQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSG 480 (871)
Q Consensus 401 ~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~ 480 (871)
+.. -+..|++.|....+.+++.....+|..|-- .....+..+.. -...++.|++-|....+.
T Consensus 284 ~~G---aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~---~~~~nk~~I~~--~~Gal~~Lv~LL~~~~~~---------- 345 (458)
T 3nmz_A 284 EVG---SVKALMECALEVKKESTLKSVLSALWNLSA---HCTENKADICA--VDGALAFLVGTLTYRSQT---------- 345 (458)
T ss_dssp HTT---HHHHHHHHHTTCCSHHHHHHHHHHHHHHHH---HCHHHHHHHHH--STTHHHHHHHHTTCCCSS----------
T ss_pred HcC---CHHHHHHHHhcCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHH--hcCcHHHHHHHhcCCCCc----------
Confidence 433 345667777776788888877777777631 00011222221 134566666665431100
Q ss_pred CcccCCcHHHHHHHHHHHHHHH----hhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHH
Q 002882 481 GRVESTKPEILSNICELLCFCV----LHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHF 556 (871)
Q Consensus 481 ~~~~~~~~~ll~~l~ELL~Fcv----~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryi 556 (871)
...++....+=.|.-+. .... .+..+...+.+..++.||++...-++-.|++.++++... +.-...+|
T Consensus 346 -----~~~~v~~~A~~aL~nLs~~~a~~~~--~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i 417 (458)
T 3nmz_A 346 -----NTLAIIESGGGILRNVSSLIATNED--HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEAL 417 (458)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHhcccCCHH--HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 00012222222222222 2222 245677888999999999988888999999999998754 44467899
Q ss_pred HhcCChHHHHHHHH
Q 002882 557 VKNNLLKPIVDAFV 570 (871)
Q Consensus 557 Ik~nLf~PIl~~f~ 570 (871)
++.+.+.|+++++.
T Consensus 418 ~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 418 WDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHTHHHHHHTTTT
T ss_pred HHCCCHHHHHHHHh
Confidence 99999999998764
No 61
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=88.30 E-value=14 Score=43.96 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhhccchhhhHHhhh-hHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHH
Q 002882 489 EILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVD 567 (871)
Q Consensus 489 ~ll~~l~ELL~Fcv~~H~yriK~~il~~-nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~ 567 (871)
..-.+.+.+|+..+.+.+-+....|+.. .-+.+++.+|......++=.|+-++-.+.. .+.-..+-+.-.|.|+++++
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~-~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR-SNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHhccHHHHHH
Confidence 3446788999999999999999999977 478999999998889999999999988764 55667777888899999999
Q ss_pred HHHHhCC-CCcchHHHHHHHHHHHHhhCh
Q 002882 568 AFVANGN-RYNLLNSAVLELFEYIRKENL 595 (871)
Q Consensus 568 ~f~~ng~-R~NLLnSA~LELfe~Ir~eNi 595 (871)
++...|. +..++-+=||.++.-+-+.|.
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 9987664 677899999999999998884
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=86.88 E-value=4.9 Score=47.08 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=52.4
Q ss_pred CcHHHHHHHH--cCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 360 GIFDIVTDAL--QSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 360 GLl~vi~~~L--~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
.+.+.|..+| .+.++.||..|+--+..+...+|.+++ ...+++.|.+ ++.|.|+|++....-+|..+.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-------~~~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-------MGDWTSRVVH-LLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-------CCSCHHHHHH-HTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-------chhHHHHHHH-HhCCCCccHHHHHHHHHHHHH
Confidence 4567788888 889999999999999999999998764 1346666665 458999999877766666553
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=85.78 E-value=29 Score=38.50 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=130.4
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
++.|...+++++ .+.+..++..|+.+|. . .+..| ..+++.|.++.+-..|++++..++..|+-.|..+.-
T Consensus 4 l~~lv~~L~s~~--~~~q~~A~~~L~~l~~---~-~~~~~----~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQD--EKYQAIGAYYIQHTCF---Q-DESAK----QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSC--THHHHHHHHHHHHHTS---S-CSSHH----HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHHHc---C-ChHHH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 445555565543 3667888888888663 1 12223 256688999999999999999999999999999988
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCC
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP 469 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p 469 (871)
++|. .|..+++..+. ..|++.|-...++.++.+.+.+|..|--.+ ..|..++ +..++.|++-|.....
T Consensus 74 ~~~~-~k~~i~~~G~i---~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~----~~~~~i~----~g~i~~Lv~ll~~~~s 141 (457)
T 1xm9_A 74 RSTT-NKLETRRQNGI---REAVSLLRRTGNAEIQKQLTGLLWNLSSTD----ELKEELI----ADALPVLADRVIIPFS 141 (457)
T ss_dssp SCHH-HHHHHHHTTCH---HHHHHHHTTCCCHHHHHHHHHHHHHHHTSS----STHHHHH----HHHHHHHHHHTTHHHH
T ss_pred CCHH-HHHHHHHcCCH---HHHHHHHhhCCCHHHHHHHHHHHHHHhcCH----HhHHHHH----hccHHHHHHHHhcccc
Confidence 7666 46667665543 344555543668899999999998886331 1344343 2667777776632000
Q ss_pred CcccccccCCCCccc-CCcHHHHHHHHHHHHHHHhhccchhhhHHhhh-hHHHHHHHhhhc------cchhhHHHHHHHH
Q 002882 470 QEGIAQSASSGGRVE-STKPEILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRR------REKYLVVAAVRFV 541 (871)
Q Consensus 470 ~e~~~~~~~~~~~~~-~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~-nll~rVl~Ll~~------~~K~L~LaAlRF~ 541 (871)
. ..... ....+ .....++.+.+-.|..+... + ..+..+... .++..++.+++. .+.-.+-.|+..+
T Consensus 142 ~--~~~~~--~~~~~e~~~~~v~~~a~~aL~nLs~~-~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L 215 (457)
T 1xm9_A 142 G--WCDGN--SNMSREVVDPEVFFNATGCLRNLSSA-D-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215 (457)
T ss_dssp T--CC-----------CCCHHHHHHHHHHHHHHTTS-H-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHH
T ss_pred c--cccCc--cchhcccccHHHHHHHHHHHHHHccC-H-HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHH
Confidence 0 00000 00000 13456777777777777765 2 345667765 889999988874 2223455666667
Q ss_pred HHHh
Q 002882 542 RTIL 545 (871)
Q Consensus 542 R~iI 545 (871)
|++.
T Consensus 216 ~nLs 219 (457)
T 1xm9_A 216 HNLS 219 (457)
T ss_dssp HHHT
T ss_pred Hhcc
Confidence 7753
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=84.62 E-value=16 Score=39.83 Aligned_cols=227 Identities=14% Similarity=0.124 Sum_probs=133.6
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcC-----------CCcchhhhhhHHHHHHHhcCh
Q 002882 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDP 392 (871)
Q Consensus 324 ~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~-----------~d~~ir~~atDIL~~iie~dP 392 (871)
...+-.++.+|..++ .. +..|. .+++.|.++.|-..|.. .+..++..|+-+|..+...++
T Consensus 46 ~~~~~~A~~aL~nls---~d--~e~R~----~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~ 116 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS---FD--EEHRH----AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV 116 (354)
T ss_dssp GGTHHHHHHHHHHHH---TS--HHHHH----HHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred hHHHHHHHHHHHHHc---CC--HHHHH----HHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH
Confidence 344556666665543 22 33333 45788999888877742 124577888888888887765
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcc
Q 002882 393 NLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG 472 (871)
Q Consensus 393 ~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~ 472 (871)
. .|..+....+ .+..|+++| ...++.++.+...+|+.|-...+ ...|..+. -...++.|++-|....
T Consensus 117 ~-~k~~i~~~~G--aIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~--~~~k~~i~---~~G~Ip~Lv~lL~~~~---- 183 (354)
T 3nmw_A 117 A-NKATLCSMKG--CMRALVAQL-KSESEDLQQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK---- 183 (354)
T ss_dssp H-HHHHHHHCHH--HHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCC--HHHHHHHH---HTTHHHHHHHHHHHCC----
T ss_pred H-HHHHHHHcCC--cHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCC--HHHHHHHH---HCCCHHHHHHHHhcCC----
Confidence 4 2443433222 345566644 46788999999999999954211 11233332 2346788888765421
Q ss_pred cccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHh-hhhHHHHHHHhhhccch----hhHHHHHHHHHHHhc-
Q 002882 473 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS- 546 (871)
Q Consensus 473 ~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il-~~nll~rVl~Ll~~~~K----~L~LaAlRF~R~iI~- 546 (871)
...+....+-.|.-+.. |.-..|.-|. ....+.-++.|++.... -++-.|...+|++-.
T Consensus 184 --------------~~~~~~~A~~aL~nLs~-~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 184 --------------KESTLKSVLSALWNLSA-HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp --------------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHHHc-cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 11223333344443333 2222344555 67788888888876543 255566677776543
Q ss_pred --CchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 002882 547 --RHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 590 (871)
Q Consensus 547 --l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~I 590 (871)
..++ +...+++.+.+.|++.++.. + ...+...|+--|...-
T Consensus 249 ~a~~~~-~~~~i~~~g~i~~Lv~lL~~-~-~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 249 IATNED-HRQILRENNCLQTLLQHLKS-H-SLTIVSNACGTLWNLS 291 (354)
T ss_dssp HTTCHH-HHHHHHTTTHHHHHHHHTTC-S-CHHHHHHHHHHHHHHT
T ss_pred ccCCHH-HHHHHHHcCCHHHHHHHHcC-C-ChHHHHHHHHHHHHHh
Confidence 4554 67788899999999988853 2 2335555555555443
No 65
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=83.67 E-value=24 Score=39.90 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=121.9
Q ss_pred HHHhcCcHHHHHHHHcC-----------CCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhH
Q 002882 355 DLMNEGIFDIVTDALQS-----------QDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDM 423 (871)
Q Consensus 355 ~Lv~~GLl~vi~~~L~~-----------~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~gl 423 (871)
.+++.|.++.|-..|.. .+..++..|+-+|..+.-.++. .+..+....+ .+..|+++| ...++.+
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-~k~~i~~~~G--aIp~LV~LL-~s~~~~v 259 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-NKATLCSMKG--CMRALVAQL-KSESEDL 259 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHCHH--HHHHHHHGG-GCSCHHH
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-cHHHHHHcCC--cHHHHHHHH-hCCCHHH
Confidence 45688999888888742 2345677888888888877764 2433333222 355666655 4678899
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHh
Q 002882 424 HCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVL 503 (871)
Q Consensus 424 k~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~ 503 (871)
+.+.+.+|+.|-...+ ...|..+. -...++.|++-|.... ...+....+-.|.-+..
T Consensus 260 ~~~A~~aL~nLs~~~~--~~~k~~I~---~~GaI~~LV~lLl~s~------------------~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 260 QQVIASVLRNLSWRAD--VNSKKTLR---EVGSVKALMECALEVK------------------KESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHHHHHTSSCC--HHHHHHHH---HTTHHHHHHHHHTTCC------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--HHHHHHHH---HcCCHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHcc
Confidence 9999999999954211 11223222 2346778877665320 11222233333333333
Q ss_pred hccchhhhHHh-hhhHHHHHHHhhhccch----hhHHHHHHHHHHHhc---CchhHHHHHHHhcCChHHHHHHHHHhCCC
Q 002882 504 HHPYRIKCNFL-LNNVVDKVLLLTRRREK----YLVVAAVRFVRTILS---RHDEHLINHFVKNNLLKPIVDAFVANGNR 575 (871)
Q Consensus 504 ~H~yriK~~il-~~nll~rVl~Ll~~~~K----~L~LaAlRF~R~iI~---l~Defy~ryiIk~nLf~PIl~~f~~ng~R 575 (871)
|.-..|.-|. ....+.-++.|+..... -++-.|...+|++-. ..++ +...|++.+.+.|++.++.. + .
T Consensus 317 -~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~G~i~~Lv~LL~~-~-~ 392 (458)
T 3nmz_A 317 -HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKS-H-S 392 (458)
T ss_dssp -HCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHSSC-S-C
T ss_pred -CCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHcccHHHHHHHHcC-C-C
Confidence 2222344455 66788888888876543 256667777777654 4444 67788899999999988753 2 2
Q ss_pred CcchHHHHHHHHHHH
Q 002882 576 YNLLNSAVLELFEYI 590 (871)
Q Consensus 576 ~NLLnSA~LELfe~I 590 (871)
......||-=|...-
T Consensus 393 ~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 393 LTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 235555555555443
No 66
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=82.97 E-value=38 Score=33.67 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=102.9
Q ss_pred HHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhh
Q 002882 367 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRD 446 (871)
Q Consensus 367 ~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d 446 (871)
..+.+.+-..|..|.+-|..+++..|... ...-..++..|.+.|-.|.+..++...+.+|..|... + +.
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-----~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~--l----~~ 90 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLE-----NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG--L----AK 90 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBC-----CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--H----GG
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCC-----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--H----hh
Confidence 34578888999999999988888655421 1111245666666654588988887788887777521 1 11
Q ss_pred HHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhh
Q 002882 447 TIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLT 526 (871)
Q Consensus 447 ~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll 526 (871)
.| ..++..++.+|+.... ..+..+-...++.|.-|+...++ ..++..++..+
T Consensus 91 ----~~-~~~~~~ilp~ll~~l~---------------d~~~~vr~~a~~aL~~~~~~~~~--------~~ll~~l~~~l 142 (242)
T 2qk2_A 91 ----RF-SNYASACVPSLLEKFK---------------EKKPNVVTALREAIDAIYASTSL--------EAQQESIVESL 142 (242)
T ss_dssp ----GG-HHHHHHHHHHHHHGGG---------------CCCHHHHHHHHHHHHHHHTTSCH--------HHHHHHHHHHT
T ss_pred ----hH-HHHHHHHHHHHHHHHc---------------CCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHH
Confidence 12 3456667777766311 01223344556666666654431 45788888888
Q ss_pred hccchhhHHHHHHHHHHHhcCc--hhHHHHHHHhcCChHHHHHHH
Q 002882 527 RRREKYLVVAAVRFVRTILSRH--DEHLINHFVKNNLLKPIVDAF 569 (871)
Q Consensus 527 ~~~~K~L~LaAlRF~R~iI~l~--Defy~ryiIk~nLf~PIl~~f 569 (871)
..++..++..++.++..++... +.++..|+ ..++..++..+
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l 185 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTL 185 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHh
Confidence 8888899999999999988773 33445555 23444455554
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=81.26 E-value=61 Score=38.56 Aligned_cols=232 Identities=15% Similarity=0.175 Sum_probs=124.8
Q ss_pred HHhHHHHHHHhHHHHHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHH
Q 002882 285 VANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDI 364 (871)
Q Consensus 285 ~s~LnSlI~fNq~eIV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~v 364 (871)
...|..+.-.+....=+.+.+.+.=+..|.+.+.++. ..-|.+++.+|.+++.-..++|. . +.-.|.|+.
T Consensus 143 lqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL~~Lt~~n~~iQk---l-----VAFEnaFe~ 212 (651)
T 3grl_A 143 VKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLLQALTRSNGAIQK---I-----VAFENAFER 212 (651)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHHHHHHTTCHHHHH---H-----HHHTTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHHHHHhcCCHHHHH---H-----HHHhccHHH
Confidence 3344444444444444455555666788888888653 57799999999998876666652 2 234577777
Q ss_pred HHHHHcCCCc----chhhhhhHHHHHHHhcChHHHHHHHHhcCC-cchHHHHHHHHhccCCh------hHHH--HHHHHH
Q 002882 365 VTDALQSQDK----KLVLTGTDILILFLNQDPNLLRSYVVRQEG-IPLLGLLVKGMITDFGE------DMHC--QFLEIL 431 (871)
Q Consensus 365 i~~~L~~~d~----~ir~~atDIL~~iie~dP~lvR~~i~~qe~-~~Ll~~Li~~ll~d~d~------glk~--Ql~eaL 431 (871)
+-.++..+.. -+..-+.-+|..++.++|+- +..+++.+ .+-| +.+|-.+.+. -+.. -+.+++
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN--Q~~FrEt~~i~~L---~~LL~~~~~~~~W~~Qk~~N~~~~L~iI 287 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN--QNFFKEGSYIQRM---KPWFEVGDENSGWSAQKVTNLHLMLQLV 287 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTCGGGG---GGGGCCCSCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH--HHHHHHcCCHHHH---HHHhCCCccccccHHHHHHHHHHHHHHH
Confidence 7666665443 23344556788899999873 33344322 2111 1111111111 1122 267899
Q ss_pred HHhcCCCCCCchhhhHHHHHHHHh-hHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhh
Q 002882 432 RSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIK 510 (871)
Q Consensus 432 k~LLDp~~m~~~e~d~fL~~FY~~-~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK 510 (871)
++|+.|.+.....+ ..=..|++. .+..|+.-++... ....+....+-.++=.++.|+. ..
T Consensus 288 rlLv~~~~~~~~t~-~nQ~~~~~~g~l~~Ll~ll~~~~-----------------~p~~i~~~Al~tla~~irgN~~-~Q 348 (651)
T 3grl_A 288 RVLVSPNNPPGATS-SCQKAMFQCGLLQQLCTILMATG-----------------VPADILTETINTVSEVIRGCQV-NQ 348 (651)
T ss_dssp HHHTCTTSCHHHHH-HHHHHHHHTTHHHHHHHHHTCSS-----------------CCHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHhCCCCCCCCCH-HHHHHHHHCCCHHHHHHHHccCC-----------------CCHHHHHHHHHHHHHHHhCCHH-HH
Confidence 99999876421111 112345554 3556666554321 1122323333333334555543 22
Q ss_pred hHHhhh--------h-HHHHHHHhhhccch-hhHHHHHHHHHHHhcCchh
Q 002882 511 CNFLLN--------N-VVDKVLLLTRRREK-YLVVAAVRFVRTILSRHDE 550 (871)
Q Consensus 511 ~~il~~--------n-ll~rVl~Ll~~~~K-~L~LaAlRF~R~iI~l~De 550 (871)
.+|-.. . ++.-.+.++++++. -++++|.-||++.+.-|++
T Consensus 349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 333222 2 22222334566664 5689999999999877764
No 68
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=76.20 E-value=54 Score=36.37 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=114.3
Q ss_pred HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCC
Q 002882 362 FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLS 441 (871)
Q Consensus 362 l~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~ 441 (871)
++.+-..|++++..++..|+..|..+..+++. .|..+.+..+ +..|++.| ...++.++.+...+|+.|.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~---i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~--- 75 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGG---ICKLVDLL-RSPNQNVQQAAAGALRNLVFRS--- 75 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTH---HHHHHHHT-TSSCHHHHHHHHHHHHHHHSSC---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCC---HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCC---
Confidence 34555677888999999999999988877766 4544554332 44555544 4678889988999999886421
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHH
Q 002882 442 GAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDK 521 (871)
Q Consensus 442 ~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~r 521 (871)
...|..+.+ ...++.|++-|... ...++....+-.|.-+..+.. .|..|+. ..+..
T Consensus 76 ~~~k~~i~~---~G~i~~Lv~lL~~~------------------~~~~~~~~a~~aL~nLa~~~~--~~~~i~~-g~i~~ 131 (457)
T 1xm9_A 76 TTNKLETRR---QNGIREAVSLLRRT------------------GNAEIQKQLTGLLWNLSSTDE--LKEELIA-DALPV 131 (457)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHTTC------------------CCHHHHHHHHHHHHHHHTSSS--THHHHHH-HHHHH
T ss_pred HHHHHHHHH---cCCHHHHHHHHhhC------------------CCHHHHHHHHHHHHHHhcCHH--hHHHHHh-ccHHH
Confidence 112322222 24577777766311 022344455666666666533 5667888 99999
Q ss_pred HHHhhhc--------c--------chhhHHHHHHHHHHHhcCchhHHHHHHHhc-CChHHHHHHHHH
Q 002882 522 VLLLTRR--------R--------EKYLVVAAVRFVRTILSRHDEHLINHFVKN-NLLKPIVDAFVA 571 (871)
Q Consensus 522 Vl~Ll~~--------~--------~K~L~LaAlRF~R~iI~l~Defy~ryiIk~-nLf~PIl~~f~~ 571 (871)
++.++.. . +.-+.-.|++.++++-+- ++ ....|++. +.+.|++.++..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~-~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DA-GRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HH-HHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HH-HHHHHHHcCCCHHHHHHHHHh
Confidence 9998832 1 123344788888887754 43 56667776 999999998874
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=76.16 E-value=91 Score=38.75 Aligned_cols=218 Identities=8% Similarity=0.061 Sum_probs=123.2
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh-ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK-SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK-~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ 386 (871)
.-|..|+..+.+++ .+-|+.+...|.+...-.. .+.+... ..+++.+-..|.+++..+|.+|...|..
T Consensus 6 ~~l~~lL~~l~s~d--~~~R~~A~~~L~~~l~~~~~~~~~~~~---------~~il~~Ll~~L~d~~~~vR~~A~~~L~~ 74 (1230)
T 1u6g_C 6 YHISNLLEKMTSSD--KDFRFMATNDLMTELQKDSIKLDDDSE---------RKVVKMILKLLEDKNGEVQNLAVKCLGP 74 (1230)
T ss_dssp HHHHHHHHHTTCSS--HHHHHHHHHHHHHHTSSSCCSCCTTHH---------HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCC--HhHHHHHHHHHHHHHcccccCCChhHH---------HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44778888887654 5677777777766442210 1111111 1234445556778899999999999988
Q ss_pred HHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHh
Q 002882 387 FLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITA 466 (871)
Q Consensus 387 iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~ 466 (871)
++..-+.-.+. .++..|++.+ .+.+..++.....+|..+..--.-.. ....+...+++..++.|+.-+.+
T Consensus 75 l~~~~~~~~~~--------~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~-~~~~~~~~~~~~llp~L~~~l~~ 144 (1230)
T 1u6g_C 75 LVSKVKEYQVE--------TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPAS-SGSALAANVCKKITGRLTSAIAK 144 (1230)
T ss_dssp HHTTSCHHHHH--------HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCHHHHH--------HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcc-cccchHHHHHHHHHHHHHHHHcC
Confidence 88766552221 2455666654 45566677666677776653111000 01123444556666666664421
Q ss_pred cCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhc
Q 002882 467 SCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS 546 (871)
Q Consensus 467 ~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~ 546 (871)
. .....-...++.|+-++...+..+..|+ ..++..++.++...+..++-.|++.+..++.
T Consensus 145 ~------------------~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 145 Q------------------EDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp C------------------SCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred C------------------CchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 0 0112223344555554543333333332 6688888888888888999999999999876
Q ss_pred Cc-hhHHHHHHHhcCChHHHHHHHHHh
Q 002882 547 RH-DEHLINHFVKNNLLKPIVDAFVAN 572 (871)
Q Consensus 547 l~-Defy~ryiIk~nLf~PIl~~f~~n 572 (871)
.- +++ -..++.+++..+...
T Consensus 205 ~~~~~~------~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 205 SCGNIV------FVDLIEHLLSELSKN 225 (1230)
T ss_dssp TC----------CTTHHHHHHHHHHHT
T ss_pred hcCHHH------HHHHHHHHHHHhccC
Confidence 53 333 234556666666543
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.92 E-value=51 Score=31.63 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHH---------hhhccChHhHHHHHHHHHhc---CcHHHHHHHHcCC
Q 002882 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCG---------LSKSLQMVQQLRLFRDLMNE---GIFDIVTDALQSQ 372 (871)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~---------lsK~LQ~~~r~~lf~~Lv~~---GLl~vi~~~L~~~ 372 (871)
.++..+..|...+.+++ ...|..++.-|.++.. +.++-.+.-|......|... +.++.+...|.++
T Consensus 16 ~~~~~~~~L~~~L~~~~--~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~ 93 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDE 93 (211)
T ss_dssp CCGGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS
T ss_pred cCHhHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC
Confidence 34555666666666432 3445555544443321 11111222333333333332 2555666666666
Q ss_pred CcchhhhhhHHH
Q 002882 373 DKKLVLTGTDIL 384 (871)
Q Consensus 373 d~~ir~~atDIL 384 (871)
+..+|..++..|
T Consensus 94 ~~~vr~~a~~aL 105 (211)
T 3ltm_A 94 DGWVRQSAAVAL 105 (211)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666665554443
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=75.65 E-value=51 Score=38.57 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=106.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHH-HhhHHHHHHHHHhcCCCcccccccCCCCcccCC
Q 002882 408 LGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFY-EKHLGQLIDVITASCPQEGIAQSASSGGRVEST 486 (871)
Q Consensus 408 l~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY-~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~ 486 (871)
+..|+.+|-...++.++.+...||.-|...... ....+-..+- ...++.|++-|.. .
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~---~~~~~~~~v~~~~glp~Lv~LL~s-------------------~ 367 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWT---YGRYIRSALRQEKALSAIADLLTN-------------------E 367 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH---HHHHHHHHHTSHHHHHHHHHGGGC-------------------S
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHcCcHHHHHHHHcC-------------------C
Confidence 456677776667889999999999998643211 1111111222 2345555553321 1
Q ss_pred cHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccc--------hhhHHHHHHHHHHHhcCchhHHHHHHHh
Q 002882 487 KPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRRE--------KYLVVAAVRFVRTILSRHDEHLINHFVK 558 (871)
Q Consensus 487 ~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~--------K~L~LaAlRF~R~iI~l~Defy~ryiIk 558 (871)
...+....|-.|..+..++. .+..| ....+.++++||...+ .-.+..|++.+.+++..+++ ..+.|+.
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~--~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~ 443 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR--NKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRE 443 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS--CHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChh--HHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 33566778888888888664 45544 7788999999987653 23467899999999866554 6889999
Q ss_pred cCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 002882 559 NNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 592 (871)
Q Consensus 559 ~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~ 592 (871)
.+.+.+++.++.......+..-.|+.=|......
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9999999998864334556777777777666443
No 72
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=74.70 E-value=1.2e+02 Score=34.57 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=59.5
Q ss_pred hHhHHHHHHHHHhc-------CcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhcc
Q 002882 346 MVQQLRLFRDLMNE-------GIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITD 418 (871)
Q Consensus 346 ~~~r~~lf~~Lv~~-------GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d 418 (871)
+.-|..-.++|.+- .+++.+..+|.++++.+|..|+--+..+...+|..+.. ..++..|.+ ++.|
T Consensus 100 ~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-------~~~~~~l~~-lL~d 171 (591)
T 2vgl_B 100 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-------QGFLDSLRD-LIAD 171 (591)
T ss_dssp HHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-------HHHHHHHHH-TTSC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-------ccHHHHHHH-HhCC
Confidence 33444445555443 24455777888999999999999999999999987753 124444444 5578
Q ss_pred CChhHHHHHHHHHHHhcCC
Q 002882 419 FGEDMHCQFLEILRSLLDS 437 (871)
Q Consensus 419 ~d~glk~Ql~eaLk~LLDp 437 (871)
.+++++...+.+|..+...
T Consensus 172 ~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 172 SNPMVVANAVAALSEISES 190 (591)
T ss_dssp SCHHHHHHHHHHHHHHTTS
T ss_pred CChhHHHHHHHHHHHHHhh
Confidence 9999998888888887643
No 73
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=74.56 E-value=9.7 Score=43.34 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=70.4
Q ss_pred HHHHHhhCCHHHHHHHHHHh-C-CCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcc
Q 002882 298 YVVSLLKDDSTFIQELFARL-R-SPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKK 375 (871)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~l-~-~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ 375 (871)
+|++++..|+..-..++.-+ + =|-++ ..+ -|.||.|+-.+...+++.+ |..+ -.-||..|..++.++..+
T Consensus 270 cv~qf~eKDp~L~~~vi~~LLk~WP~tn--s~K-evlFL~eleeile~~~~~e----f~~i-~~~lF~~la~ci~S~hfq 341 (449)
T 2npp_B 270 CVVQFLEKDSTLTEPVVMALLKYWPKTH--SPK-EVMFLNELEEILDVIEPSE----FVKI-MEPLFRQLAKCVSSPHFQ 341 (449)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHTCCSSC--HHH-HHHHHHHHHHHHTTCCHHH----HHHH-HHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCC--chH-HHHHHHHHHHHHHhCCHHH----HHHH-HHHHHHHHHHHHcCCCHH
Confidence 68888988876444444322 1 12222 122 2679999988887776543 2222 223788888999988877
Q ss_pred hhhhhh-----HHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCC
Q 002882 376 LVLTGT-----DILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSY 438 (871)
Q Consensus 376 ir~~at-----DIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~ 438 (871)
|--.|. +-++.++..+...+--.++. .|.+..-.-=+..++.-...+|++|+|-+
T Consensus 342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p--------~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 342 VAERALYYWNNEYIMSLISDNAAKILPIMFP--------SLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHH--------HHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCHHHHHHHHhchhhhHHhhHH--------HHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 644433 44455555554433222211 11111111235677777888899887654
No 74
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=72.68 E-value=10 Score=36.28 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=67.4
Q ss_pred CeeEEEEeCC-CCCceeccceEEEEEEe-C--CC---cceeEEEEec--CCCcceeEeecCCCCccccccCeEEEecCCC
Q 002882 15 QRVKVYRLND-DGKWDDQGTGHVTVDSM-E--RS---EELCLFVIDE--EDNETILLHRISPDDIYRKQEDTIISWRDPE 85 (871)
Q Consensus 15 rRVKVY~L~~-~~~W~D~GTG~~s~~~~-e--~~---~~~~L~V~sE--~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~ 85 (871)
-|+-|..-++ .+.|.--|-|=++..++ . +. ..-...|.++ .|...+|+..|.++-.|.|=-.|.=.|.++.
T Consensus 16 ~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqWrd~~ 95 (130)
T 3syx_A 16 VRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDD 95 (130)
T ss_dssp EEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEEEETT
T ss_pred EEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEecccccccccccC
Confidence 4677777765 67899987654443332 1 11 1123444444 6777899999999999999999999999987
Q ss_pred ccccccccccCccchhHHHHHHHHHh
Q 002882 86 YSTELALSFQEPTGCSYIWDNICNVQ 111 (871)
Q Consensus 86 ~g~DlALSFQe~~GC~~IW~~I~~VQ 111 (871)
.=+.|.||.++.....=+.+.++-
T Consensus 96 --~~yGL~F~S~~dA~~F~~~~~~Al 119 (130)
T 3syx_A 96 --KKFGLTFQSPADARAFDRGIRRAI 119 (130)
T ss_dssp --EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --eEeecccCCHHHHHHHHHHHHHHH
Confidence 448999999998877655555443
No 75
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=71.35 E-value=1.1e+02 Score=34.22 Aligned_cols=248 Identities=19% Similarity=0.288 Sum_probs=126.6
Q ss_pred CCCCCHHHHHHHHhh---cChhhHHHHHHHHhcchHHHHHHHHHHHHHHhcC---ChhhHHHHHHHHH---HHHh--cCC
Q 002882 137 IELSTLPLILKTVTE---SGIADQMRLTELILNDQDFFRKLMDLFRICEDLE---NIDGLHMIFKIIK---GIIL--LNS 205 (871)
Q Consensus 137 ~el~nL~eIl~~i~~---~s~~~r~rla~~Il~~~~YI~kLl~LF~~cEdle---~~~~Lh~L~~IvK---~Iil--LNd 205 (871)
|.+.+|.-+.+++.. ++.+ .-++++-.+ |..++.+|+++|+...-.| -..-||+||.=+- ..|. +|
T Consensus 96 ~sWpHLqlVYe~llrfi~s~~f-~~~~~k~~i-d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~in- 172 (403)
T 3fga_B 96 AAWPHLQLVYEFFLRFLESPDF-QPNIAKKYI-DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQIN- 172 (403)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTC-CHHHHTTTS-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-
T ss_pred cCcHHHHHHHHHHHHHHhcccc-ChhhHHhhc-CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-
Confidence 445577766665533 2222 223443333 5789999999997542211 1334555432211 1111 11
Q ss_pred hhhHhhhhcchhHhHHhhhcc------cCCCCCCccchhHhhhhcCCceeeeecCChHHHHHHHhhheeeeeeehhcccc
Q 002882 206 PQIFEKIFGDELMMDIIGSLE------YDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARV 279 (871)
Q Consensus 206 ~~IiE~llsDe~i~~VvG~LE------YDPe~p~~~~HR~fL~~~a~FKEVVPI~d~~i~~KIHqtYRLqYLKDVVLpR~ 279 (871)
.-++..+...+..-||--.|| -.=..|-+..|+.||.+ =.+|+-- +-.
T Consensus 173 nif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~-----vLlPLHk---------~~~------------ 226 (403)
T 3fga_B 173 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLK-----VLLPLHK---------VKS------------ 226 (403)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHH-----TTTGGGG---------STT------------
T ss_pred HHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHH-----HHHHHHc---------CCc------------
Confidence 122333445554555444444 12223444578888752 2233321 111
Q ss_pred cchhhHHhHHHHHHHhH--HHHHHHhhCCHHHHHHHHHHh-C-CCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHH
Q 002882 280 LDEATVANLNSIIHGNN--AYVVSLLKDDSTFIQELFARL-R-SPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRD 355 (871)
Q Consensus 280 LDD~t~s~LnSlI~fNq--~eIV~~Lq~d~~FL~eLF~~l-~-~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~ 355 (871)
+ + .|..| .+|++++..|+..-..++.-+ + =|.++. . .-|.||.|+-.+...+++.. |..
T Consensus 227 ~-----~-----~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns--~-KevlFL~Ele~iLe~~~~~~----f~~ 289 (403)
T 3fga_B 227 L-----S-----VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHS--P-KEVMFLNELEEILDVIEPSE----FVK 289 (403)
T ss_dssp G-----G-----GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCH--H-HHHHHHHHHHHHHTTCCHHH----HHH
T ss_pred c-----h-----hhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCc--H-HHHHHHHHHHHHHHhCCHHH----HHH
Confidence 1 0 12222 268899998886544444322 1 122221 1 23679999988887776542 222
Q ss_pred HHhcCcHHHHHHHHcCCCcchhhhhh-----HHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHH
Q 002882 356 LMNEGIFDIVTDALQSQDKKLVLTGT-----DILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEI 430 (871)
Q Consensus 356 Lv~~GLl~vi~~~L~~~d~~ir~~at-----DIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~ea 430 (871)
. ..-||..|..++.++..+|--.|. +-++.++..++..+--.+ +..|.+..-.-=+..++.....+
T Consensus 290 i-~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii--------~p~L~~~~~~HWn~~v~~l~~~v 360 (403)
T 3fga_B 290 I-MEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIM--------FPSLYRNSKTHWNKTIHGLIYNA 360 (403)
T ss_dssp H-HHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHH--------HHHHHHTTSCCSCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHccCHHHHHHHHHH
Confidence 1 122677888888888776543332 555566665555443322 12222222223367788888899
Q ss_pred HHHhcCCCC
Q 002882 431 LRSLLDSYT 439 (871)
Q Consensus 431 Lk~LLDp~~ 439 (871)
||+|+|-+.
T Consensus 361 lk~l~e~d~ 369 (403)
T 3fga_B 361 LKLFMEMNQ 369 (403)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHhCH
Confidence 999986443
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=70.99 E-value=59 Score=33.27 Aligned_cols=184 Identities=10% Similarity=0.124 Sum_probs=107.5
Q ss_pred cHHhHHHHHHHHHH-HHHhhhccCh-HhHHHHHHHHHhcCcHHHHHHHH-cCCCcchhhhhhHHHHHHHhcCh-HHHH-H
Q 002882 323 LEESKKNLVHFLHE-FCGLSKSLQM-VQQLRLFRDLMNEGIFDIVTDAL-QSQDKKLVLTGTDILILFLNQDP-NLLR-S 397 (871)
Q Consensus 323 ~~e~rrd~v~FL~E-~c~lsK~LQ~-~~r~~lf~~Lv~~GLl~vi~~~L-~~~d~~ir~~atDIL~~iie~dP-~lvR-~ 397 (871)
.-..|++++.=|.. ++.=+..+.. ... | ..++..+..+| ++.+..+|..|+..|..+.+.=. .-+. .
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~---~-----~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQN---Y-----SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCC---C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCccc---H-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 44677777765555 5431222321 000 1 13466777788 78899999999999988774221 1122 3
Q ss_pred HHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCccccccc
Q 002882 398 YVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSA 477 (871)
Q Consensus 398 ~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~ 477 (871)
|.. .++..|++.+ .|...-++..+..+|..++..-+..... .+++.++..|+....
T Consensus 101 y~~-----~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~----------~~l~~ll~~l~~~l~-------- 156 (249)
T 2qk1_A 101 YVS-----LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASS----------GRNEDMLKDILEHMK-------- 156 (249)
T ss_dssp HHH-----HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTT----------CTTHHHHHHHHHHTT--------
T ss_pred HHH-----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccC----------CcHHHHHHHHHHHHc--------
Confidence 321 2555556554 6777888888888877776532111000 002233333333210
Q ss_pred CCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhH--HhhhhHHHHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 478 SSGGRVESTKPEILSNICELLCFCVLHHPYRIKCN--FLLNNVVDKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 478 ~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~--il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
..++++-.-.+..|+.|+.+.+-..+.| .+...++..+..+|.-.++-++-+|..++-++.
T Consensus 157 -------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 157 -------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp -------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1133445567888888888876421222 123678888999999888999999999988854
No 77
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=69.87 E-value=17 Score=34.81 Aligned_cols=93 Identities=14% Similarity=0.265 Sum_probs=65.0
Q ss_pred eeEEEEeCC-CCCceeccceEEEEEEeCCC--cceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCccccccc
Q 002882 16 RVKVYRLND-DGKWDDQGTGHVTVDSMERS--EELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELAL 92 (871)
Q Consensus 16 RVKVY~L~~-~~~W~D~GTG~~s~~~~e~~--~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlAL 92 (871)
-|-||..++ .++|.-.|..=.-..| ++. .-.+++|.+-.+.+.+ ...|.++..++-|++-|| |.... +.-+.|
T Consensus 37 ~v~vY~f~~~~~~W~K~~iEG~LFv~-~R~~~P~~~~ivLNR~~~~n~-~~~l~~~~~~e~~~~~li-~r~~~-~~I~Gi 112 (134)
T 2lyd_A 37 HVAFYTFNSSQNEWEKTDVEGAFFIY-HRNAEPFHSIFINNRLNTTSF-VEPITGSLELQSQPPFLL-YRNER-SRIRGF 112 (134)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEE-ECSSSSSEEEEEEETTTTEEE-EEECCSSCEEEEETTEEE-EEEGG-GEEEEE
T ss_pred eEEEEEecCCcCceeEcCCcceEEEE-EccCCCceEEEEEcCCCCcce-eEEcCCCcEEEeeCCEEE-EECCC-CcEEEE
Confidence 588999965 4689887643211112 232 2356778777665544 346888999999888665 55443 456899
Q ss_pred cccCccchhHHHHHHHHHhh
Q 002882 93 SFQEPTGCSYIWDNICNVQR 112 (871)
Q Consensus 93 SFQe~~GC~~IW~~I~~VQ~ 112 (871)
-|-+.+-|..|.+.+..+++
T Consensus 113 Wf~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 113 WFYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp EESSHHHHHHHHHHHHHHHH
T ss_pred EecChHHHHHHHHHHHHHHh
Confidence 99999999999999988865
No 78
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=69.31 E-value=71 Score=37.21 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHcCCCcchhhhhhHHHHHHHhcChH--HHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC
Q 002882 364 IVTDALQSQDKKLVLTGTDILILFLNQDPN--LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYT 439 (871)
Q Consensus 364 vi~~~L~~~d~~ir~~atDIL~~iie~dP~--lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~ 439 (871)
.+...|.+.++.+|-.|.+.|..++...|. .+.. ....++..|-.+.|..++....++|-.|.++.|
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~---------~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N 401 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT---------HIETVINALKTERDVSVRQRAVDLLYAMCDRSN 401 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT---------THHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH---------HHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh
Confidence 333444566667777777777777666652 2211 223334444338888899888888888876543
No 79
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=56.99 E-value=91 Score=32.02 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=80.0
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
++.|...+.+++...+.+..+...|+-+|.- .++.|. .+++.|.++.+-..|++++..++..|+-.|..+.-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~----~~~~r~----~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQ----KSEARK----RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH----CHHHHH----HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcC----CcHHHH----HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 5666677776665446677777777765531 122232 35688999999999999999999999999988887
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
.++. -|..|.+..+ +..|+++|-...+..++.+...+|..|=
T Consensus 82 ~~~~-nk~~I~~~Ga---I~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 82 EDND-NKLEVAELNG---VPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp TCHH-HHHHHHHTTH---HHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHcCC---HHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 6665 3556665443 3344555544568899999999988883
No 80
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=56.17 E-value=3.7e+02 Score=33.29 Aligned_cols=271 Identities=11% Similarity=0.139 Sum_probs=129.7
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
.+++.++..+.++.....-|.+++.++..++. .+.+.. |...+ ..+++.+-..+.+.+..++..+...+..+
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~---~~~~~~----~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l 546 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILC---NHSPQV----FHPHV-QALVPPVVACVGDPFYKITSEALLVTQQL 546 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH---SSCGGG----GHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH---hCCHHH----HHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 46666677777765544556677766666553 232211 11111 35677777788888777887777777766
Q ss_pred Hhc-Ch------HHHHHHHHhcCCcchHHHHHHHHh-ccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHH
Q 002882 388 LNQ-DP------NLLRSYVVRQEGIPLLGLLVKGMI-TDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQ 459 (871)
Q Consensus 388 ie~-dP------~lvR~~i~~qe~~~Ll~~Li~~ll-~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~ 459 (871)
+.. .+ ..+..|+ ..++..|+..+- .+.+..++.....+|..|...-+-. + .-+|..+++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~-----~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~------~-~~~~~~~l~~ 614 (1230)
T 1u6g_C 547 VKVIRPLDQPSSFDATPYI-----KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN------L-GSDLPNTLQI 614 (1230)
T ss_dssp HHHHCCSSSCCCCCCHHHH-----HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG------C-CTHHHHHHHH
T ss_pred HHHhcCcccccccchHHHH-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch------h-hhhHHHHHHH
Confidence 643 11 0111111 124455555543 4667788888888888886432110 0 1134444444
Q ss_pred HHHHHHhcCCC-------cccccccCC-CCc-------------ccCCcHHHHHHHHHHHHHHHhhccchhh-hHHhhhh
Q 002882 460 LIDVITASCPQ-------EGIAQSASS-GGR-------------VESTKPEILSNICELLCFCVLHHPYRIK-CNFLLNN 517 (871)
Q Consensus 460 L~~pL~~~~p~-------e~~~~~~~~-~~~-------------~~~~~~~ll~~l~ELL~Fcv~~H~yriK-~~il~~n 517 (871)
|...+.....- ......... ... .+.....+-...++.|+-++..++-.+- ..+ ..
T Consensus 615 L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v--~~ 692 (1230)
T 1u6g_C 615 FLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI--DA 692 (1230)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHH--HH
T ss_pred HHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHH--HH
Confidence 44333210000 000000000 000 0001223334555666666655543320 000 01
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHHHHHHHhh----
Q 002882 518 VVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKE---- 593 (871)
Q Consensus 518 ll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LELfe~Ir~e---- 593 (871)
++..++.++...+....-.++.++..++......+.. +-..++..++.++....-+..-+ .+.+.+|..+-..
T Consensus 693 ~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~-~~l~~~~~~l~~~~~~~ 769 (1230)
T 1u6g_C 693 VLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK--ISGSILNELIGLVRSPLLQGGAL-SAMLDFFQALVVTGTNN 769 (1230)
T ss_dssp HHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG--TTTTTHHHHHHHHTCTTCCHHHH-HHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHH--hHHhHHHHHHHHHcCcccchHHH-HHHHHHHHHHHhcCCCC
Confidence 1112222334455667778899999988665432211 24556666666654332122222 3455666666543
Q ss_pred -ChHHHHHHHH
Q 002882 594 -NLKSLVKYIV 603 (871)
Q Consensus 594 -Nik~Li~hlv 603 (871)
.+..++.-++
T Consensus 770 ~~~~~ll~~l~ 780 (1230)
T 1u6g_C 770 LGYMDLLRMLT 780 (1230)
T ss_dssp CSHHHHHHHHS
T ss_pred CCHHHHHHHHh
Confidence 3455555554
No 81
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=51.70 E-value=3.9e+02 Score=32.26 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=58.9
Q ss_pred HHHHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhh-h------ccChHhHHHHHHHHHhcCcHHHHHHHHcC
Q 002882 299 VVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS-K------SLQMVQQLRLFRDLMNEGIFDIVTDALQS 371 (871)
Q Consensus 299 IV~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~ls-K------~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~ 371 (871)
-++.++..+.|+.-|..++.+.+.+.+-|.-+...||.++.-. + .+.+..|..+ +..|+..+. +
T Consensus 26 ~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~i-----k~~ll~~l~----~ 96 (960)
T 1wa5_C 26 NLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELI-----KKEIVPLMI----S 96 (960)
T ss_dssp HHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHH-----HHHHHHHHH----H
T ss_pred HHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH-----HHHHHHHHH----h
Confidence 3345677889999999998777777777888888888887542 1 3455554432 222333322 2
Q ss_pred CCcchhhhhhHHHHHHHhcC-----hHHHHH
Q 002882 372 QDKKLVLTGTDILILFLNQD-----PNLLRS 397 (871)
Q Consensus 372 ~d~~ir~~atDIL~~iie~d-----P~lvR~ 397 (871)
....+|...++++..|+.+| |.++-.
T Consensus 97 ~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~ 127 (960)
T 1wa5_C 97 LPNNLQVQIGEAISSIADSDFPDRWPTLLSD 127 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCccchhHHHHH
Confidence 34778888888888877764 666554
No 82
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=51.62 E-value=53 Score=31.08 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=59.2
Q ss_pred eeEEEEeCC-CCCceeccc---eEEEEEEeCCCcceeEEEEecCCCcceeEeecCCCCccccccCeEEEecCCCcccccc
Q 002882 16 RVKVYRLND-DGKWDDQGT---GHVTVDSMERSEELCLFVIDEEDNETILLHRISPDDIYRKQEDTIISWRDPEYSTELA 91 (871)
Q Consensus 16 RVKVY~L~~-~~~W~D~GT---G~~s~~~~e~~~~~~L~V~sE~d~~~LL~s~I~~~d~YqkQqeTLIvWte~~~g~DlA 91 (871)
-|=||..+. .++|...|. =|+.. -+....+++|.+-.+++.+ ...|.++..++-|++-|| |+... +.=++
T Consensus 32 ~v~vY~f~~~~~~W~K~~iEGtLFv~~---R~~P~~~~iVlNR~~~~n~-~~~i~~~~~~e~~~~~l~-~r~~~-~~i~G 105 (127)
T 2qkl_A 32 HVAVYQFDVGSQKWLKTSIEGTFFLVK---DQRARVGYVILNRNSPENL-YLFINHPSNVHLVDRYLI-HRTEN-QHVVG 105 (127)
T ss_dssp EEEEECC------CCEEEEEEEEEEEE---ETTCCEEEEEEESSSSCCE-EEEECSGGGEEEETTEEE-EEETT-TEEEE
T ss_pred eEEEEEecCCCCceEEcCcEEEEEEEE---ccCCceEEEEEcCCCCcCe-eEecCCCceEEEeCCEEE-EEcCC-CcEEE
Confidence 588999975 579988763 33322 1222356777777666543 446888899998887555 66654 67788
Q ss_pred ccccCccchhHHHHHHHHH
Q 002882 92 LSFQEPTGCSYIWDNICNV 110 (871)
Q Consensus 92 LSFQe~~GC~~IW~~I~~V 110 (871)
|=|-+.+-|..|.+.+..+
T Consensus 106 iWf~~~~d~~~i~~~l~~l 124 (127)
T 2qkl_A 106 LWMFDPNDMSRIFNIVKES 124 (127)
T ss_dssp EEESSTHHHHHHHHHHHHH
T ss_pred EEEEchHHHHHHHHHHHHH
Confidence 9999999999998887654
No 83
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.79 E-value=1.7e+02 Score=27.57 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=14.3
Q ss_pred cHHHHHHHHcCCCcchhhhhhHHH
Q 002882 361 IFDIVTDALQSQDKKLVLTGTDIL 384 (871)
Q Consensus 361 Ll~vi~~~L~~~d~~ir~~atDIL 384 (871)
.++.+..+|.++++.+|..++..|
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVAL 100 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 556666666666666665555444
No 84
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=49.60 E-value=46 Score=34.10 Aligned_cols=76 Identities=7% Similarity=0.232 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHH
Q 002882 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILIL 386 (871)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ 386 (871)
+..|..|+..+++++ ..-|..++.||-.++.-++.. +. -|...+...|++++..+|.+.++.+|..|++.+..
T Consensus 145 ~~ll~~l~~~l~~k~--~~vk~~al~~l~~~~~~~~~~--~~---~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 145 EDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDG--YS---TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHCCSC--SH---HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHcCCc--ch---hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 368889999998763 477889999999998876642 11 12222335688999999999999999999999987
Q ss_pred HHh
Q 002882 387 FLN 389 (871)
Q Consensus 387 iie 389 (871)
+..
T Consensus 218 i~~ 220 (249)
T 2qk1_A 218 LIK 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 85
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=46.92 E-value=3.2e+02 Score=29.89 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002882 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (871)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ii 388 (871)
+++-+...+.++ +..-|+.++..|-+++.. +... .....+++.+...+++++..+|..|...|..+.
T Consensus 165 l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~---~~~~--------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 165 LRQYFRNLCSDD--TPMVRRAAASKLGEFAKV---LELD--------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHTCS--CHHHHHHHHHHHHHHHHT---SCHH--------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH---hcHH--------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 334444444543 446677777777666543 3221 123567888888899999999999999998888
Q ss_pred hcChH-HHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 002882 389 NQDPN-LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLL 435 (871)
Q Consensus 389 e~dP~-lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LL 435 (871)
+.-+. .... .++..+ ..++.+.+..++....++|-.+.
T Consensus 232 ~~~~~~~~~~--------~~~~~l-~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 232 QLLPQEDLEA--------LVMPTL-RQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HHSCHHHHHH--------HTHHHH-HHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HhCCHHHHHH--------HHHHHH-HHHccCCCHHHHHHHHHHHHHHH
Confidence 76543 2211 133333 33457788888888888877765
No 86
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=46.06 E-value=3.8e+02 Score=30.48 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
+.++-..|++++ .++|++++.=|--+..++... ..+++.+++ .+++++..+|.+|-=-+..+.+
T Consensus 15 ~~~i~~~L~~~~--~~~k~~~~~kli~~~~~G~d~-------------~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~ 78 (591)
T 2vgl_B 15 IFELKAELNNEK--KEKRKEAVKKVIAAMTVGKDV-------------SSLFPDVVN-CMQTDNLELKKLVYLYLMNYAK 78 (591)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHHHHTTCCC-------------GGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHHCCCCh-------------HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcc
Confidence 455666666543 456666654333333333221 234555555 5677777777666555555555
Q ss_pred cChHH
Q 002882 390 QDPNL 394 (871)
Q Consensus 390 ~dP~l 394 (871)
.+|.+
T Consensus 79 ~~~e~ 83 (591)
T 2vgl_B 79 SQPDM 83 (591)
T ss_dssp HSHHH
T ss_pred cCchH
Confidence 55554
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=45.63 E-value=2.5e+02 Score=29.55 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=82.5
Q ss_pred HcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHH---HHhccCChhHHHHHHHHHHHhcCC-----CCC
Q 002882 369 LQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVK---GMITDFGEDMHCQFLEILRSLLDS-----YTL 440 (871)
Q Consensus 369 L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~---~ll~d~d~glk~Ql~eaLk~LLDp-----~~m 440 (871)
|-+.|.+-+..|.|.|...++.+|..+-. .++++++ .-+.|.+.-+....+++|..|++- ..|
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~---------~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLS---------NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHH---------THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHH---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34567777888899988888877743311 1222222 122466766666666666666531 112
Q ss_pred CchhhhH----------------------HHHHHHHhh-HHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHH
Q 002882 441 SGAQRDT----------------------IIEIFYEKH-LGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICEL 497 (871)
Q Consensus 441 ~~~e~d~----------------------fL~~FY~~~-~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~EL 497 (871)
...|-.. .+..++.-+ ..+++..+.... ....+-.-.-.|+.
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~---------------ksKN~R~R~e~l~~ 190 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL---------------KSKNARQRSECLLV 190 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG---------------GCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---------------ccCCHHHHHHHHHH
Confidence 2111112 222222211 233344333311 11112223456788
Q ss_pred HHHHHhhccchhhhHHhhhhHH---HHHHHhhhccchhhHHHHHHHHHHHh
Q 002882 498 LCFCVLHHPYRIKCNFLLNNVV---DKVLLLTRRREKYLVVAAVRFVRTIL 545 (871)
Q Consensus 498 L~Fcv~~H~yriK~~il~~nll---~rVl~Ll~~~~K~L~LaAlRF~R~iI 545 (871)
+..++..|..-. ...+ .-|+.++..++.-++=+|+.++-.|.
T Consensus 191 l~~li~~~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 191 IEYYITNAGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHHCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888888887651 2345 77889999999999999999988754
No 88
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=45.47 E-value=2.9e+02 Score=34.76 Aligned_cols=178 Identities=13% Similarity=0.170 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhh---ccChHhHHHHHHHHHhc--CcHHHHHHHHcCC-------
Q 002882 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSK---SLQMVQQLRLFRDLMNE--GIFDIVTDALQSQ------- 372 (871)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK---~LQ~~~r~~lf~~Lv~~--GLl~vi~~~L~~~------- 372 (871)
+=++|+.+|+..+.+ +...+.-++.+|..+|.-.. .+....+..+...|... .||..+..+|...
T Consensus 131 ~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~ 207 (1204)
T 3a6p_A 131 HWPDMLIELDTLSKQ---GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQV 207 (1204)
T ss_dssp TCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346788888877654 23345556667777764321 12222222233333322 2334444444321
Q ss_pred ------------CcchhhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCC
Q 002882 373 ------------DKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTL 440 (871)
Q Consensus 373 ------------d~~ir~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m 440 (871)
+..++..+.+.+..++.--|. +++.. ....++.+++.. +. ++.++...+++|..++.- .+
T Consensus 208 ~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~---~~i~~-~~~~ll~~l~~~-l~--~~~lr~~A~ecL~~i~s~-~~ 279 (1204)
T 3a6p_A 208 KTDTSQESKAQANCRVGVAALNTLAGYIDWVSM---SHITA-ENCKLLEILCLL-LN--EQELQLGAAECLLIAVSR-KG 279 (1204)
T ss_dssp TTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH---HHHHT-TTSHHHHHHHHG-GG--CTTTHHHHHHHHHHHHTC-CS
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHhccCH---HHHHh-ccchHHHHHHHH-cC--CHHHHHHHHHHHHHHHhC-CC
Confidence 112333344444433332221 11221 123467777643 33 567888889999999863 33
Q ss_pred CchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhh
Q 002882 441 SGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLH 504 (871)
Q Consensus 441 ~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~ 504 (871)
...++..++.+|+...+..++.-+....+.. +.....+....+|++++-+..+
T Consensus 280 ~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~-----------~~e~d~e~~k~l~~ll~~lg~~ 332 (1204)
T 3a6p_A 280 KLEDRKPLMVLFGDVAMHYILSAAQTADGGG-----------LVEKHYVFLKRLCQVLCALGNQ 332 (1204)
T ss_dssp CHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS-----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC-----------CccHHHHHHHHHHHHHHHHHHH
Confidence 3335556666666655656655433211100 0111234556777777766654
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=44.16 E-value=4.8e+02 Score=31.12 Aligned_cols=324 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHhhhee------eeeeehhcccccchh-hHHhHHHHHHHhHHHHHHH--hhCCHHHHHHHHHHhCC---CCCcH
Q 002882 257 LVLSKIHQTYRV------GYLKDVVLARVLDEA-TVANLNSIIHGNNAYVVSL--LKDDSTFIQELFARLRS---PTTLE 324 (871)
Q Consensus 257 ~i~~KIHqtYRL------qYLKDVVLpR~LDD~-t~s~LnSlI~fNq~eIV~~--Lq~d~~FL~eLF~~l~~---~~~~~ 324 (871)
.++.+|+..|.- .+||+-+|.-+...+ .-..+-.-+..-=+.|+.+ ..+=++|+.+|+..+.+ ...+.
T Consensus 81 ~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~ 160 (963)
T 2x19_B 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQ 160 (963)
T ss_dssp HHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CH
T ss_pred HHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcH
Q ss_pred HhHHHHHHHHHHHH--HhhhccChHhHHHHHHHHHhcC--cHHHHHHHHcCCCcc--hhhhhhHHHHHHHhcChHHHHHH
Q 002882 325 ESKKNLVHFLHEFC--GLSKSLQMVQQLRLFRDLMNEG--IFDIVTDALQSQDKK--LVLTGTDILILFLNQDPNLLRSY 398 (871)
Q Consensus 325 e~rrd~v~FL~E~c--~lsK~LQ~~~r~~lf~~Lv~~G--Ll~vi~~~L~~~d~~--ir~~atDIL~~iie~dP~lvR~~ 398 (871)
..+.-++.+|+.+| .....+....|..+...|...- +++++..+|...... ++..+...+...+.......
T Consensus 161 ~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~--- 237 (963)
T 2x19_B 161 GRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ--- 237 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG---
T ss_pred HHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc---
Q ss_pred HHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccC
Q 002882 399 VVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSAS 478 (871)
Q Consensus 399 i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~ 478 (871)
....++..+++.+ .++.+....+++|..++. ....+.....+..++...+.. ...+...
T Consensus 238 ----~~~~ll~~l~~~l---~~~~~~~~a~~~l~~i~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~----------- 296 (963)
T 2x19_B 238 ----DCEALIQAAFAAL---QDSELFDSSVEAIVNAIS--QPDAQRYVNTLLKLIPLVLGL-QEQLRQA----------- 296 (963)
T ss_dssp ----GTHHHHHHHHHHT---TSTTTHHHHHHHHHHHHT--CTTGGGCHHHHHHHHHHHHTT-HHHHHHH-----------
T ss_pred ----cchHHHHHHHHHh---CCchHHHHHHHHHHHHHc--ccccccCHHHHHHHHHHHHhh-HHHHHHH-----------
Q ss_pred CCCcccCCcHHHHHHHHHHHHHHHhhccchhh----hHHhhhhHHHHHHHhhhc-----cchhhHHHHHHHHHHHhc-Cc
Q 002882 479 SGGRVESTKPEILSNICELLCFCVLHHPYRIK----CNFLLNNVVDKVLLLTRR-----REKYLVVAAVRFVRTILS-RH 548 (871)
Q Consensus 479 ~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK----~~il~~nll~rVl~Ll~~-----~~K~L~LaAlRF~R~iI~-l~ 548 (871)
+...+.+.+..+|++++-+...|.-.+. .--.-..++.-++..+.. .+--+...|+-|.-+++. ..
T Consensus 297 ----~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~ 372 (963)
T 2x19_B 297 ----VQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL 372 (963)
T ss_dssp ----HHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHT
T ss_pred ----HHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHH
Q ss_pred h------hHHHHHHHhcCChHHHHHHHHHhCCCCcchH----------------HHHHHHHHHHHhhChHHHHHHHHHHh
Q 002882 549 D------EHLINHFVKNNLLKPIVDAFVANGNRYNLLN----------------SAVLELFEYIRKENLKSLVKYIVDSF 606 (871)
Q Consensus 549 D------efy~ryiIk~nLf~PIl~~f~~ng~R~NLLn----------------SA~LELfe~Ir~eNik~Li~hlve~y 606 (871)
+ .-....+. ..+..++.+++.+..+..--. .++.+++..+..-.-+.++.++++..
T Consensus 373 ~~~~~~~~~~~~~~~--~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l 450 (963)
T 2x19_B 373 SFEAEKQAVYQQVYR--PVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKL 450 (963)
T ss_dssp TSCHHHHHHHHHHHH--HHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHH--HHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Q ss_pred Hhhc
Q 002882 607 WNQL 610 (871)
Q Consensus 607 ~~~l 610 (871)
...+
T Consensus 451 ~~~l 454 (963)
T 2x19_B 451 GRLL 454 (963)
T ss_dssp HHHH
T ss_pred HHHH
No 90
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=43.95 E-value=2.2e+02 Score=31.72 Aligned_cols=84 Identities=17% Similarity=0.319 Sum_probs=48.5
Q ss_pred HHHHHhhCCHHHHHHHHHHh---CC-CCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCC
Q 002882 298 YVVSLLKDDSTFIQELFARL---RS-PTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQD 373 (871)
Q Consensus 298 eIV~~Lq~d~~FL~eLF~~l---~~-~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d 373 (871)
+|++++..|+..-..++.-+ =. .+... -|.||.|+-.+...+++.+=...- .-||..|..++.++.
T Consensus 282 cv~qf~eKDp~L~~~vi~~LLk~WP~tns~K-----evlFL~eleeiLe~~~~~~f~~i~-----~~lF~~la~ci~S~h 351 (392)
T 2jak_A 282 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPK-----EVMFLNELEEILDVIEPSEFVKIM-----EPLFRQLAKCVSSPH 351 (392)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHSSCSSCCTT-----HHHHHHHHHHHHHTCCHHHHHHHH-----HHHHHHHHHHHTCSS
T ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCchH-----HHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHHHHHcCCc
Confidence 68888888876444444322 11 12222 288999998888877765322221 235677788888877
Q ss_pred cchhhhhh-----HHHHHHHhcC
Q 002882 374 KKLVLTGT-----DILILFLNQD 391 (871)
Q Consensus 374 ~~ir~~at-----DIL~~iie~d 391 (871)
.+|--.|. |-++.++..+
T Consensus 352 fqVAErAL~~wnNe~i~~li~~n 374 (392)
T 2jak_A 352 FQVAERALYYWNNEYIMSLISDN 374 (392)
T ss_dssp HHHHHHHHGGGGCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcHHHHHHHHhh
Confidence 66543332 4444555444
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=40.27 E-value=1.2e+02 Score=37.33 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=44.9
Q ss_pred CCCCCcHHhHHHHHHHHHHHHHhhhc-cC--hHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002882 318 RSPTTLEESKKNLVHFLHEFCGLSKS-LQ--MVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (871)
Q Consensus 318 ~~~~~~~e~rrd~v~FL~E~c~lsK~-LQ--~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~ 390 (871)
.+....++-|.+...||+.++...-. +- ++ ..| ..+++.+-+++++++..+..+|+.++..++..
T Consensus 812 ~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~---~~~-----~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 812 KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPP---AAF-----KLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCH---HHH-----HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred cchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCH---HHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 34555778999999999998764321 11 11 112 24556667899999999999999998877763
No 92
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=37.69 E-value=2.9e+02 Score=28.24 Aligned_cols=89 Identities=10% Similarity=0.067 Sum_probs=66.2
Q ss_pred chhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHH
Q 002882 507 YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 586 (871)
Q Consensus 507 yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LEL 586 (871)
...|..|.....+..++.||++.+.-++-.|+.-+|++-..+++ .-..|++.+-+.|++.++...++ ..+...|+-=|
T Consensus 42 ~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~-nk~~I~~~GaI~~Lv~lL~~~~~-~~~~e~a~~aL 119 (233)
T 3tt9_A 42 SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND-NKLEVAELNGVPRLLQVLKQTRD-LETKKQITGLL 119 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCHHHHHHHHccCCC-HHHHHHHHHHH
Confidence 44577788889999999999999999999999999998765444 66788899999999999976443 34555555445
Q ss_pred HHHHHhhChHH
Q 002882 587 FEYIRKENLKS 597 (871)
Q Consensus 587 fe~Ir~eNik~ 597 (871)
+..-..+..|.
T Consensus 120 ~nLS~~~~~k~ 130 (233)
T 3tt9_A 120 WNLSSNDKLKN 130 (233)
T ss_dssp HHHHTSGGGHH
T ss_pred HHHHcChhhHH
Confidence 54443344443
No 93
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=33.59 E-value=6.1e+02 Score=29.21 Aligned_cols=120 Identities=13% Similarity=0.225 Sum_probs=74.9
Q ss_pred HHHHHHHcCCCcchhhhhhHHHHHHHhcChH-HHHHHHHhcCCcchHHHHHHHHhcc-CChh-HHHHHHHHHHHhcCCCC
Q 002882 363 DIVTDALQSQDKKLVLTGTDILILFLNQDPN-LLRSYVVRQEGIPLLGLLVKGMITD-FGED-MHCQFLEILRSLLDSYT 439 (871)
Q Consensus 363 ~vi~~~L~~~d~~ir~~atDIL~~iie~dP~-lvR~~i~~qe~~~Ll~~Li~~ll~d-~d~g-lk~Ql~eaLk~LLDp~~ 439 (871)
+.|..+|.+.+..+..++|.|+. .-.|. ++ .+..++..|.+.+.++ +..| +-+++=.+++.|-.
T Consensus 119 e~i~~aL~S~~~~l~~~~ckVI~---~s~pk~lf-------a~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss--- 185 (500)
T 3vld_A 119 EDLVKALRSEIDPLKVAACRVIE---NSQPKGLF-------ATSNIIDILLDILFDEKVENDKLITAIEKALERLST--- 185 (500)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHH---TCSSGGGG-------TTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhcCChHHHHHHHHHhc---ccCchhHh-------ccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc---
Confidence 45666777777888888888866 22232 11 2467888888888774 5667 88888788887721
Q ss_pred CCchhhhHHHH-HHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhh---ccchhhhHHhh
Q 002882 440 LSGAQRDTIIE-IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLH---HPYRIKCNFLL 515 (871)
Q Consensus 440 m~~~e~d~fL~-~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~---H~yriK~~il~ 515 (871)
+++++ -..+.++ |++... . +...+-+++.++|++.-+.++ +.++-+.|++.
T Consensus 186 ------deLirrril~nnl-----~lL~~v-----K---------~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~ 240 (500)
T 3vld_A 186 ------DELIRRRLFDNNL-----PYLVSV-----K---------GRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFT 240 (500)
T ss_dssp ------SHHHHHHHHTTTH-----HHHHHH-----H---------HHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCC
T ss_pred ------hHHHHHHHHHHhH-----HHHHHH-----h---------cCCCceeHHHHHHHHHHHhcccCcccCCcceeecc
Confidence 11211 1223343 333310 0 012455788899999888555 78888889988
Q ss_pred hhHHH
Q 002882 516 NNVVD 520 (871)
Q Consensus 516 ~nll~ 520 (871)
++-+.
T Consensus 241 ~~Ei~ 245 (500)
T 3vld_A 241 KEEIL 245 (500)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87443
No 94
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.35 E-value=3.7e+02 Score=26.67 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=10.1
Q ss_pred cHHHHHHHHcCCCcchhhhh
Q 002882 361 IFDIVTDALQSQDKKLVLTG 380 (871)
Q Consensus 361 Ll~vi~~~L~~~d~~ir~~a 380 (871)
+++.+...|.+++..+|..+
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a 148 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRAT 148 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHH
Confidence 34444455555555555433
No 95
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=32.12 E-value=5.4e+02 Score=28.18 Aligned_cols=236 Identities=16% Similarity=0.145 Sum_probs=139.7
Q ss_pred HHHHHHhhCCHHHHHHHHHHhCCCCC--cHHhH--HHHHHHHHHHHHhhh-----ccChHhHHHHHHHHHhcCcHHHHHH
Q 002882 297 AYVVSLLKDDSTFIQELFARLRSPTT--LEESK--KNLVHFLHEFCGLSK-----SLQMVQQLRLFRDLMNEGIFDIVTD 367 (871)
Q Consensus 297 ~eIV~~Lq~d~~FL~eLF~~l~~~~~--~~e~r--rd~v~FL~E~c~lsK-----~LQ~~~r~~lf~~Lv~~GLl~vi~~ 367 (871)
.|+|..+. +++..+.+++. ...+| .++-+-|.++=.+-- .-++.+-.+|...+.+.+++..+-.
T Consensus 13 ~elVr~l~-------d~l~~l~~~~~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~ 85 (341)
T 1upk_A 13 ADIVKNLK-------ESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVA 85 (341)
T ss_dssp HHHHHHHH-------HHHHHHHC---CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 57776665 34555554321 11112 244455555433321 1234455678889999999999999
Q ss_pred HHcCCCcchhhhhhHHHHHHHhcChH---HHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchh
Q 002882 368 ALQSQDKKLVLTGTDILILFLNQDPN---LLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQ 444 (871)
Q Consensus 368 ~L~~~d~~ir~~atDIL~~iie~dP~---lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e 444 (871)
.|..=+-..|-.++.|+..++-+.+. ..-.|+.++ .-++..|+.+-= ..+.++ -.-.+||..+--+.
T Consensus 86 ~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gYe-~~diAl--~~G~mLRecir~e~----- 155 (341)
T 1upk_A 86 DLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYE-SPEIAL--NCGIMLRECIRHEP----- 155 (341)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGG-STTTHH--HHHHHHHHHHTSHH-----
T ss_pred hcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC--HHHHHHHHHhhc-cchhHh--HHHHHHHHHHHhHH-----
Confidence 99988888899999999988887753 233466552 335555555442 223222 23344444331111
Q ss_pred hhHHHH-HHHHhhHHHHHHHHHhcCCCcccccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhh---HHH
Q 002882 445 RDTIIE-IFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNN---VVD 520 (871)
Q Consensus 445 ~d~fL~-~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~n---ll~ 520 (871)
+.. .+|..++-.+|+-+-. | .+ . ..+..+.-+=|||+ .|.--.-.| +.+| +..
T Consensus 156 ---la~~iL~~~~f~~fF~yv~~--~----------~F--d-iasDAf~TfkelLt----~Hk~lvaef-L~~nyd~Ff~ 212 (341)
T 1upk_A 156 ---LAKIILWSEQFYDFFRYVEM--S----------TF--D-IASDAFATFKDLLT----RHKLLSAEF-LEQHYDRFFS 212 (341)
T ss_dssp ---HHHHHHHSGGGGHHHHHTTC--S----------SH--H-HHHHHHHHHHHHHH----SSHHHHHHH-HHHTHHHHHH
T ss_pred ---HHHHHhccHHHHHHHHHhcC--C----------Cc--h-HHHHHHHHHHHHHh----ccHHHHHHH-HHHhHHHHHH
Confidence 111 2344444444443211 0 01 1 23445667777776 344333333 3334 456
Q ss_pred HHHHhhhccchhhHHHHHHHHHHHhcC--chhHHHHHHHhcCChHHHHHHHHHh
Q 002882 521 KVLLLTRRREKYLVVAAVRFVRTILSR--HDEHLINHFVKNNLLKPIVDAFVAN 572 (871)
Q Consensus 521 rVl~Ll~~~~K~L~LaAlRF~R~iI~l--~Defy~ryiIk~nLf~PIl~~f~~n 572 (871)
+.-+|+.+.+=.-+--+||++..++.- +=.+..|||-..+-++-+|.+|.+.
T Consensus 213 ~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~ 266 (341)
T 1upk_A 213 EYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK 266 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc
Confidence 666789988888899999999998866 6788999999999999998877554
No 96
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=29.31 E-value=5.9e+02 Score=27.74 Aligned_cols=189 Identities=10% Similarity=0.039 Sum_probs=105.5
Q ss_pred HHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHHHHhcC
Q 002882 324 EESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQE 403 (871)
Q Consensus 324 ~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~qe 403 (871)
..-|..++.-|.+++ ..+.+. -+..-+++++.....+++..+|..++.++..+..+-+...+..
T Consensus 101 ~~vR~~a~~~L~~l~---~~~~~~--------~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~----- 164 (588)
T 1b3u_A 101 TVVRDKAVESLRAIS---HEHSPS--------DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE----- 164 (588)
T ss_dssp HHHHHHHHHHHHHHH---TTSCHH--------HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHH---HHCCHH--------HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH-----
Confidence 455666665555544 444321 1223467788777788888999999999999888876544433
Q ss_pred CcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHHHhcCCCcccccccCCCCcc
Q 002882 404 GIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRV 483 (871)
Q Consensus 404 ~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL~~~~p~e~~~~~~~~~~~~ 483 (871)
++..|. .++.|.++.++.+..++|-.+...-. . + .+....++.|..-+.+ ....+
T Consensus 165 ---l~~~l~-~l~~d~~~~VR~~a~~~l~~l~~~~~---~--~----~~~~~l~~~l~~~~~d------------~~~~v 219 (588)
T 1b3u_A 165 ---LRQYFR-NLCSDDTPMVRRAAASKLGEFAKVLE---L--D----NVKSEIIPMFSNLASD------------EQDSV 219 (588)
T ss_dssp ---HHHHHH-HHHTCSCHHHHHHHHHHHHHHHHTSC---H--H----HHHHTHHHHHHHHHTC------------SCHHH
T ss_pred ---HHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhc---H--H----hHHHHHHHHHHHHhcC------------CcHHH
Confidence 333443 34578899999999998887764321 1 1 1223333433332211 00112
Q ss_pred cCCcHHHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcC-chhHHHHHHHhcCCh
Q 002882 484 ESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSR-HDEHLINHFVKNNLL 562 (871)
Q Consensus 484 ~~~~~~ll~~l~ELL~Fcv~~H~yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l-~Defy~ryiIk~nLf 562 (871)
+......+..+++.+ +- ......++..+..++...+..++-+|++.+-.+... ..+. +...++
T Consensus 220 r~~a~~~l~~l~~~~-------~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~l~ 283 (588)
T 1b3u_A 220 RLLAVEACVNIAQLL-------PQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-----TKTDLV 283 (588)
T ss_dssp HTTHHHHHHHHHHHS-------CH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-----HHHTHH
T ss_pred HHHHHHHHHHHHHhC-------CH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-----chhHHH
Confidence 222223333333321 10 112344566666777777777888999888887643 2332 234455
Q ss_pred HHHHHHH
Q 002882 563 KPIVDAF 569 (871)
Q Consensus 563 ~PIl~~f 569 (871)
..++.++
T Consensus 284 ~~l~~~l 290 (588)
T 1b3u_A 284 PAFQNLM 290 (588)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555555
No 97
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=28.41 E-value=3.8e+02 Score=27.94 Aligned_cols=72 Identities=14% Similarity=0.279 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
.||++++....+ .+.+-||-++.||.|.|. +..+.. --.++.+...|.++|+.+.-.++....++
T Consensus 53 ~~l~~il~~~~~--~~~~vrk~~~~Fi~e~~~--~k~~l~-----------~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 53 EFLESVLSLAHD--SNMEVRKQVVAFVEQVCK--VKVELL-----------PHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHGGGGC--SCHHHHHHHHHHHHHHHH--HCGGGH-----------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC--ChHHHHHHHHHHHHHHHH--HHHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455555554333 457889999999999992 111111 11345666667766665544333333332
Q ss_pred HhcChHHHHH
Q 002882 388 LNQDPNLLRS 397 (871)
Q Consensus 388 ie~dP~lvR~ 397 (871)
.|..+|.
T Consensus 118 ---Y~~~l~~ 124 (257)
T 3gs3_A 118 ---YKNGLQY 124 (257)
T ss_dssp ---HHHHHHH
T ss_pred ---HHHHHHH
Confidence 2554543
No 98
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.63 E-value=3.9e+02 Score=25.18 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=26.9
Q ss_pred ChHhHHHHHHHHHhc---CcHHHHHHHHcCCCcchhhhhhHHHH
Q 002882 345 QMVQQLRLFRDLMNE---GIFDIVTDALQSQDKKLVLTGTDILI 385 (871)
Q Consensus 345 Q~~~r~~lf~~Lv~~---GLl~vi~~~L~~~d~~ir~~atDIL~ 385 (871)
.+..|......|... +.++.+...|.+++..+|..++..|.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 75 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALG 75 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445565555566544 46788888888888888766655443
No 99
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=27.52 E-value=91 Score=29.60 Aligned_cols=85 Identities=15% Similarity=0.307 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCc--------HHHHHHHHcCCCcchhhhhhHHHHHHHhcChHHHHHH
Q 002882 327 KKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGI--------FDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSY 398 (871)
Q Consensus 327 rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GL--------l~vi~~~L~~~d~~ir~~atDIL~~iie~dP~lvR~~ 398 (871)
-+++.-.|++||.+-|.--...=..++ +++.+.+ -+.+.++|++..++++.++.-+|..+|.-=- .
T Consensus 36 E~~il~~i~ncCe~Ik~~Y~~~fn~l~-d~m~~di~~YnI~nvkn~l~~~l~D~rPSVkLAtisLLSiIIkKl~----k- 109 (145)
T 2jby_A 36 EMDLLCQLSNCCDFINETYAKNYDTLY-DIMERDILSYNIVNIKNTLTFALRDASPSVKLATLTLLASVIKKLN----K- 109 (145)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH----T-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhhhhhhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----H-
Confidence 356788899999987655443333444 3333333 3577899999999999988888877764211 1
Q ss_pred HHhcCCcchHHHHHHHHhcc
Q 002882 399 VVRQEGIPLLGLLVKGMITD 418 (871)
Q Consensus 399 i~~qe~~~Ll~~Li~~ll~d 418 (871)
++..+...++-+|+.+..+
T Consensus 110 -I~h~d~~~~~evIn~isa~ 128 (145)
T 2jby_A 110 -IQHTDAAMFSEVIDGIVAE 128 (145)
T ss_dssp -TSCCCGGGGHHHHHHHSSS
T ss_pred -hhccHHHHHHHHHHHHhhh
Confidence 1234566777777777543
No 100
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=27.16 E-value=77 Score=33.69 Aligned_cols=77 Identities=16% Similarity=0.429 Sum_probs=57.1
Q ss_pred HHHHHHHHH--HHhhccchhhhHHhhhhHHHHHHHhhh--cc---chhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHH
Q 002882 492 SNICELLCF--CVLHHPYRIKCNFLLNNVVDKVLLLTR--RR---EKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKP 564 (871)
Q Consensus 492 ~~l~ELL~F--cv~~H~yriK~~il~~nll~rVl~Ll~--~~---~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~P 564 (871)
..+|-.|+- ||-.|+- .|..|++-+++..+--.++ ++ .-+|+|++|-.+-+++...|.-...|+....++..
T Consensus 71 nRVcnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 445554443 7777876 5678888888766554443 23 35999999999999999999999999999997665
Q ss_pred HHHHH
Q 002882 565 IVDAF 569 (871)
Q Consensus 565 Il~~f 569 (871)
.+..+
T Consensus 150 CLrim 154 (268)
T 2fv2_A 150 CLRIM 154 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 101
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=27.07 E-value=9.3e+02 Score=29.33 Aligned_cols=223 Identities=16% Similarity=0.245 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhcc-----ChHhHHHHHHHHHh--cCcHHHHHHHHcCC-Ccch
Q 002882 305 DDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSL-----QMVQQLRLFRDLMN--EGIFDIVTDALQSQ-DKKL 376 (871)
Q Consensus 305 ~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~L-----Q~~~r~~lf~~Lv~--~GLl~vi~~~L~~~-d~~i 376 (871)
.-++|+++|+..+. .+...+.-++.+|+-+|.-...+ ....+..+-..|.. ..+|.++..+|... +..+
T Consensus 135 ~Wp~ll~~L~~~~~---~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~ 211 (1049)
T 3m1i_C 135 NWPEFIPELIGSSS---SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSL 211 (1049)
T ss_dssp TCTTHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHHHHHHHHHc---cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999886 23344555677777777443322 22222222222322 23566666666543 4557
Q ss_pred hhhhhHHHHHHHhcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCch---hhhHHHHHHH
Q 002882 377 VLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGA---QRDTIIEIFY 453 (871)
Q Consensus 377 r~~atDIL~~iie~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~---e~d~fL~~FY 453 (871)
+..+...+..++..-|. ++++. ..++..+++.++. ++.++...+++|..++.-. |... ....|+.+|
T Consensus 212 ~~~aL~~l~~~l~wi~~---~~~~~---~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~-~~~~~~~~~~~~~~l~- 281 (1049)
T 3m1i_C 212 IVATLESLLRYLHWIPY---RYIYE---TNILELLSTKFMT--SPDTRAITLKCLTEVSNLK-IPQDNDLIKRQTVLFF- 281 (1049)
T ss_dssp HHHHHHHHHHHTTTSCT---HHHHS---SSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC-CCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhCCH---HHHhh---hhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHH-
Confidence 77777777776664442 11222 4477887766664 6788888888888887542 2211 012344433
Q ss_pred HhhHHHHHHHHHhcCCCcc-cccccCCCCcccCCcHHHHHHHHHHHHHHHhhccchhhhHH-hh---hhHHHHHHHhhhc
Q 002882 454 EKHLGQLIDVITASCPQEG-IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNF-LL---NNVVDKVLLLTRR 528 (871)
Q Consensus 454 ~~~~~~L~~pL~~~~p~e~-~~~~~~~~~~~~~~~~~ll~~l~ELL~Fcv~~H~yriK~~i-l~---~nll~rVl~Ll~~ 528 (871)
...+..|-.- ..|... ....-.. ....+.+....+|++++-+...|.-.+...- .. ..++.-++..+..
T Consensus 282 ~~~l~~l~~s---i~p~~~~l~~~~~~---~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~ 355 (1049)
T 3m1i_C 282 QNTLQQIATS---VMPVTADLKATYAN---ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI 355 (1049)
T ss_dssp HHHHHHHHHH---TCCTTSCHHHHHHH---TCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHh---hCCCcccHHHHhcc---CCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcC
Confidence 4444433220 111100 0000000 0011334556788888777766643321100 01 2233444444445
Q ss_pred cchhhHHHHHHHHHHHhc
Q 002882 529 REKYLVVAAVRFVRTILS 546 (871)
Q Consensus 529 ~~K~L~LaAlRF~R~iI~ 546 (871)
.+.-+...|+-|.-++..
T Consensus 356 ~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 356 EERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 566677788888887765
No 102
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=26.56 E-value=3.2e+02 Score=26.47 Aligned_cols=110 Identities=6% Similarity=0.033 Sum_probs=70.8
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
+.++..+..++....+. ...+-++|.+.++-....|.+. .+|..-|++.++.+...|..+|=+|+.
T Consensus 16 ~~~~IekATs~~~~~~D----w~~~leicD~I~~~~~~~keA~----------ral~krl~~~n~~vql~AL~LLd~~vk 81 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTED----WSLIMDICDKVGSTPNGAKDCL----------KAIMKRVNHKVPHVALQALTLLGACVA 81 (163)
T ss_dssp THHHHHHHTCTTCSSCC----HHHHHHHHHHHHHSSSHHHHHH----------HHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHHH----------HHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566666665432222 2334578888776554555542 456667788899888889999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 436 (871)
+--..++.-+.+ ..+++.|++++-...++-++..+.+.|..+=+
T Consensus 82 NcG~~Fh~evas---~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 82 NCGKIFHLEVCS---RDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HTCHHHHHHHTS---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhh---HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 865555544433 34777777766444677787777777666643
No 103
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.21 E-value=4.6e+02 Score=25.54 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=73.5
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
+.++..+..++....+. ...+-++|.+.++-....|.. ..+|..-|++.++.+...|..+|=+|+.
T Consensus 14 ~~~~IekATs~~l~~~D----w~~ileicD~I~~~~~~~k~A----------~ral~krl~~~n~~vql~AL~LLd~~vk 79 (171)
T 1juq_A 14 LESWLNKATNPSNRQED----WEYIIGFCDQINKELEGPQIA----------VRLLAHKIQSPQEWEALQALTVLEACMK 79 (171)
T ss_dssp HHHHHHHHTCTTCSSCC----HHHHHHHHHHHHHSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHHHHcCCccHHHH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 55666666665543322 234458888876655455554 3567777889999999999999999998
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhc-----cCChhHHHHHHHHHHHhcC
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMIT-----DFGEDMHCQFLEILRSLLD 436 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~-----d~d~glk~Ql~eaLk~LLD 436 (871)
+--..++.-+.+ ..+++.|++++-. ..+..++..+.+.|..+=+
T Consensus 80 NCG~~Fh~evas---~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 80 NCGRRFHNEVGK---FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HSHHHHHHHHTS---HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHhh---HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 876666654433 4588888886632 2456777777777776643
No 104
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=25.11 E-value=5.7e+02 Score=27.92 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHhhCCHHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhc-----CcH------HHHHHHH
Q 002882 301 SLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNE-----GIF------DIVTDAL 369 (871)
Q Consensus 301 ~~Lq~d~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~-----GLl------~vi~~~L 369 (871)
+++|+|.+|..|... ++++.-|=.++.-+..=-..-=+.-|..|+.+ |++ .-|...+
T Consensus 144 ~~~q~D~~Fa~EFI~------------~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 144 QIFQEDKDLVPEFVH------------SEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHTCTTHHHHHHH------------TTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGG
T ss_pred HHhhcchHHHHHHHH------------hccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHH
Q ss_pred cCCCcchhhhhhHHHHHHHhcChHHHHHHHHh------cCCcchHHHHHHHHh--ccCChhHHHHHHHHHHHhcCCCCCC
Q 002882 370 QSQDKKLVLTGTDILILFLNQDPNLLRSYVVR------QEGIPLLGLLVKGMI--TDFGEDMHCQFLEILRSLLDSYTLS 441 (871)
Q Consensus 370 ~~~d~~ir~~atDIL~~iie~dP~lvR~~i~~------qe~~~Ll~~Li~~ll--~d~d~glk~Ql~eaLk~LLDp~~m~ 441 (871)
.+.+..|...|..||..+++++++.---..-. ..+.+++..|+++|- ...|..++.-.+-.|..+|..-. +
T Consensus 212 ~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap-d 290 (339)
T 3dad_A 212 ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP-D 290 (339)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS-S
T ss_pred cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC-C
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHh
Q 002882 442 GAQRDTIIEIFYEKHLGQLIDVITA 466 (871)
Q Consensus 442 ~~e~d~fL~~FY~~~~~~L~~pL~~ 466 (871)
...+..+.+.+=...+...+...+.
T Consensus 291 ~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 291 QDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHh
No 105
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.02 E-value=3.2e+02 Score=27.40 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=72.3
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHh
Q 002882 310 IQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLN 389 (871)
Q Consensus 310 L~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie 389 (871)
+.++..+..++....+. ...+-|+|.+.+.-+...|.+ ..+|..-|++.++.+...|..+|-+++.
T Consensus 6 ~~~~ie~AT~~~~~~~d----w~~~leicd~i~~~~~~~k~a----------~r~l~krl~~~n~~~~l~aL~Lle~~vk 71 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPD----WPSILLICDEINQKDVTPKNA----------FAAIKKKMNSPNPHSSCYSLLVLESIVK 71 (220)
T ss_dssp HHHHHHHHHCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcC----HHHHHHHHHhhcCCCcCHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 44555555555433222 224566777776544444443 3456666788899988889999999988
Q ss_pred cChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 002882 390 QDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (871)
Q Consensus 390 ~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 436 (871)
.--..++..|.+ ..+++.|++++-...+..++..+.+.+..+-+
T Consensus 72 NcG~~f~~eva~---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 72 NCGAPVHEEVFT---KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HSHHHHHHHHSS---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 876656654443 34888888766556778888888888777754
No 106
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.01 E-value=3e+02 Score=27.92 Aligned_cols=111 Identities=9% Similarity=0.155 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHH
Q 002882 309 FIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFL 388 (871)
Q Consensus 309 FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~ii 388 (871)
-+.++..+..++....+. ...+-|+|.+.+.=....|.+ ..+|+.-|++.++.+...|..+|-+++
T Consensus 8 ~~~~~i~kAT~~~~~~~d----w~~ileicD~I~~~~~~~k~a----------~ral~krl~~~n~~v~l~aL~LLe~~v 73 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETD----WESILQICDLIRQGDTQAKYA----------VNSIKKKVNDKNPHVALYALEVMESVV 73 (226)
T ss_dssp HHHHHHHHHTCTTCSSCC----HHHHHHHHHHHHTTSSCHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcC----HHHHHHHHHHHhCCCccHHHH----------HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 366677777776643332 234456777765433334544 356777788999998888989998888
Q ss_pred hcChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcC
Q 002882 389 NQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLD 436 (871)
Q Consensus 389 e~dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLD 436 (871)
..--..++.-|.+ ..+++.|++++=...+..++..+.+.|..+=+
T Consensus 74 kNcG~~f~~eias---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 74 KNCGQTVHDEVAN---KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHCHHHHHHHSS---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHhhcc---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 7766655554443 34677777766445677888888888877743
No 107
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=23.17 E-value=3.8e+02 Score=29.02 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=45.4
Q ss_pred CCCCcHHhHHHHHHHHHHHHHhhh----ccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002882 319 SPTTLEESKKNLVHFLHEFCGLSK----SLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (871)
Q Consensus 319 ~~~~~~e~rrd~v~FL~E~c~lsK----~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~ 390 (871)
|-+.-++-|..--.||+.++..+= ++.+ ++ |+ .+++.|-||++|++..|-..|.+|+..+++.
T Consensus 131 df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~-~~---fk-----lvidsiiWa~kH~~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 131 DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP-TQ---FK-----LVLDSIIWAFKHTMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCH-HH---HH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHHHhHHHHHcCCH-HH---HH-----HHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 445567899999999999886541 1222 22 22 2456788999999999999999998776653
No 108
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=23.02 E-value=2.2e+02 Score=33.34 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=70.9
Q ss_pred chhhhHHhhhhHHHHHHHhhhccchhhHHHHHHHHHHHhcCchhHHHHHHHhcCChHHHHHHHHHhCCCCcchHHHHHHH
Q 002882 507 YRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLEL 586 (871)
Q Consensus 507 yriK~~il~~nll~rVl~Ll~~~~K~L~LaAlRF~R~iI~l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NLLnSA~LEL 586 (871)
...|..|.....+...+.||++.+.-++-.|+..++++...+++-.-..|++.+.+.|++.++....+. .+...|+-=|
T Consensus 80 ~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-~~~e~aa~aL 158 (584)
T 3l6x_A 80 DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-DLTEVITGTL 158 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-HHHHHHHHHH
T ss_pred hHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-HHHHHHHHHH
Confidence 345778888899999999999999999999999999998764455788899999999999998764332 2333333222
Q ss_pred H---------HHHHhhChHHHHHHHH
Q 002882 587 F---------EYIRKENLKSLVKYIV 603 (871)
Q Consensus 587 f---------e~Ir~eNik~Li~hlv 603 (871)
+ .-|.++.+..|+..|.
T Consensus 159 ~nLS~~~~~k~~I~~~alp~Lv~LL~ 184 (584)
T 3l6x_A 159 WNLSSHDSIKMEIVDHALHALTDEVI 184 (584)
T ss_dssp HHHTTSGGGHHHHHHHTHHHHHHHTH
T ss_pred HHHhCCchhhHHHHhccHHHHHHHHh
Confidence 2 2233566778887764
No 109
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.81 E-value=5.7e+02 Score=28.29 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHH
Q 002882 308 TFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILF 387 (871)
Q Consensus 308 ~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~i 387 (871)
.||+++++...++ +.+-|+-++.||.|-|.- ..+.. --++++|...|.++|+.+.-.++....++
T Consensus 63 ~fl~~il~f~~d~--~~~vRk~~a~FieEa~~~--~~el~-----------~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADK--SIEVRKFVIGFIEEACKR--DIELL-----------LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCS--CHHHHHHHHHHHHHHHHH--CGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC--cHHHHHHHHHHHHHHHHH--HHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5777777655554 468899999999999952 11111 11345666667777766554444444333
Q ss_pred HhcChHHHH
Q 002882 388 LNQDPNLLR 396 (871)
Q Consensus 388 ie~dP~lvR 396 (871)
.|..+|
T Consensus 128 ---Ypl~f~ 133 (386)
T 3o2t_A 128 ---YKVALQ 133 (386)
T ss_dssp ---HHHHHH
T ss_pred ---HHHHHH
Confidence 255555
No 110
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=21.51 E-value=4.1e+02 Score=27.91 Aligned_cols=32 Identities=9% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHHHHHh
Q 002882 307 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGL 340 (871)
Q Consensus 307 ~~FL~eLF~~l~~~~~~~e~rrd~v~FL~E~c~l 340 (871)
..||+-|..++.++.. .-|..+...|+.+|.+
T Consensus 131 ~~~lP~LveKlGd~k~--~vR~~~r~il~~l~~v 162 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKD--NMRTSVRDIVNVLSDV 162 (266)
T ss_dssp HHHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChH--HHHHHHHHHHHHHHHH
Confidence 3688888888877652 3344444555666554
No 111
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=21.03 E-value=6.2e+02 Score=27.66 Aligned_cols=131 Identities=11% Similarity=0.175 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhcC-hHH----HHHHH
Q 002882 325 ESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQD-PNL----LRSYV 399 (871)
Q Consensus 325 e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~d-P~l----vR~~i 399 (871)
....++++-|+.+++. +..+-.-+-....+..|..+|......+|..+++||..+.... |.- |-+.+
T Consensus 135 ~~q~~~l~CLkalmN~--------~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al 206 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNN--------KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAM 206 (383)
T ss_dssp HHHHHHHHHHHHHTSS--------HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--------hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHH
Confidence 4455666666665543 2333333445567889999999999999999999998877665 332 22222
Q ss_pred Hh---cCCcchHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHhhHHHHHHHH
Q 002882 400 VR---QEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVI 464 (871)
Q Consensus 400 ~~---qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~LLDp~~m~~~e~d~fL~~FY~~~~~~L~~pL 464 (871)
-. ..+..-+..+++.|-...+..++...+-.+..|+.... +...|-..-.-|..-.+...+..|
T Consensus 207 ~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~-dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 207 TERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE-ELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp HHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCChHHHHHHH
Confidence 11 12334456677777655677888888888888887542 112343344445555666665554
No 112
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.61 E-value=4.4e+02 Score=24.71 Aligned_cols=106 Identities=6% Similarity=0.050 Sum_probs=67.3
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCCcchhhhhhHHHHHHHhc
Q 002882 311 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ 390 (871)
Q Consensus 311 ~eLF~~l~~~~~~~e~rrd~v~FL~E~c~lsK~LQ~~~r~~lf~~Lv~~GLl~vi~~~L~~~d~~ir~~atDIL~~iie~ 390 (871)
.++..+..++....+. ...+-++|.+.++-+...|.+ ..+|+.-|++.++.+...|..+|-+|+.+
T Consensus 7 d~~iekAT~~~l~~~d----w~~ileicD~I~~~~~~~k~a----------~rai~Krl~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 7 DQDVEKATSEMNTAED----WGLILDICDKVGQSRTGPKDC----------LRSIMRRVNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HHHHHHHTCTTSSSCC----HHHHHHHHHHHTTSTTHHHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcC----HHHHHHHHHHHHCCCcCHHHH----------HHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3455556555432222 445677888877655445544 35666677888888888888888888877
Q ss_pred ChHHHHHHHHhcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002882 391 DPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSL 434 (871)
Q Consensus 391 dP~lvR~~i~~qe~~~Ll~~Li~~ll~d~d~glk~Ql~eaLk~L 434 (871)
--..++.-+.+ ..+++.|++++ ...++.++..+.+.|..+
T Consensus 73 cG~~f~~evas---~~Fl~el~~l~-~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 73 CGKIFHLEVCS---RDFASEVSNVL-NKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp SCHHHHHHHSS---HHHHHHHHHHH-HHSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhh---HHHHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 65555543432 33677776644 556777777777766655
Done!